Query 006897
Match_columns 627
No_of_seqs 518 out of 3653
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 16:03:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 1.2E-92 2.7E-97 798.3 58.6 552 54-627 23-613 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 5.6E-92 1.2E-96 800.5 58.2 535 82-626 36-617 (617)
3 PLN03211 ABC transporter G-25; 100.0 6.5E-91 1.4E-95 792.0 63.6 550 54-623 37-659 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 6.7E-88 1.5E-92 820.5 58.5 542 81-622 71-694 (1394)
5 TIGR00956 3a01205 Pleiotropic 100.0 7.4E-87 1.6E-91 811.4 58.6 558 54-626 757-1394(1394)
6 PLN03140 ABC transporter G fam 100.0 8.4E-86 1.8E-90 799.3 59.2 556 55-626 866-1470(1470)
7 PLN03140 ABC transporter G fam 100.0 7.7E-86 1.7E-90 799.7 58.1 530 82-622 176-789 (1470)
8 KOG0065 Pleiotropic drug resis 100.0 1.9E-79 4.1E-84 701.3 41.3 495 56-564 787-1325(1391)
9 KOG0065 Pleiotropic drug resis 100.0 1.3E-78 2.8E-83 694.5 45.5 537 83-622 127-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 4.7E-45 1E-49 347.2 19.7 198 56-274 2-224 (240)
11 COG1125 OpuBA ABC-type proline 100.0 8.4E-43 1.8E-47 338.1 18.5 199 56-275 1-225 (309)
12 COG1135 AbcC ABC-type metal io 100.0 4.2E-42 9.1E-47 342.9 20.4 203 56-274 1-230 (339)
13 COG1120 FepC ABC-type cobalami 100.0 1.4E-41 3.1E-46 339.1 17.4 200 56-274 2-227 (258)
14 COG3638 ABC-type phosphate/pho 100.0 5.2E-41 1.1E-45 323.5 19.6 207 55-279 2-241 (258)
15 COG1127 Ttg2A ABC-type transpo 100.0 6.1E-41 1.3E-45 323.9 19.4 202 54-275 6-235 (263)
16 COG3842 PotA ABC-type spermidi 100.0 5.5E-41 1.2E-45 349.0 19.8 201 55-275 4-226 (352)
17 COG3839 MalK ABC-type sugar tr 100.0 1.4E-40 3.1E-45 344.1 19.5 200 56-276 3-224 (338)
18 COG1131 CcmA ABC-type multidru 100.0 2.1E-39 4.5E-44 336.2 22.0 204 56-279 4-230 (293)
19 COG1136 SalX ABC-type antimicr 100.0 4.9E-39 1.1E-43 315.0 20.1 192 56-265 1-221 (226)
20 COG1116 TauB ABC-type nitrate/ 100.0 2.9E-39 6.2E-44 316.7 18.4 185 56-264 3-211 (248)
21 COG1118 CysA ABC-type sulfate/ 100.0 1.7E-39 3.6E-44 323.4 15.7 201 56-275 2-227 (345)
22 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.2E-38 4.9E-43 314.6 19.5 198 55-275 3-227 (254)
23 COG2884 FtsE Predicted ATPase 100.0 8E-39 1.7E-43 298.1 15.0 193 56-269 1-220 (223)
24 COG4555 NatA ABC-type Na+ tran 100.0 1.2E-38 2.6E-43 299.2 14.8 201 56-277 1-224 (245)
25 TIGR02314 ABC_MetN D-methionin 100.0 1.2E-37 2.5E-42 329.0 22.5 202 56-274 1-229 (343)
26 PRK11432 fbpC ferric transport 100.0 1.3E-37 2.9E-42 330.0 22.9 199 55-274 5-225 (351)
27 TIGR03265 PhnT2 putative 2-ami 100.0 1.3E-37 2.8E-42 330.6 22.8 199 56-275 4-224 (353)
28 PRK13537 nodulation ABC transp 100.0 2.2E-37 4.8E-42 323.7 22.6 200 55-276 6-228 (306)
29 PRK11650 ugpC glycerol-3-phosp 100.0 1.8E-37 3.9E-42 329.9 22.1 199 56-274 3-223 (356)
30 COG1124 DppF ABC-type dipeptid 100.0 1.3E-37 2.9E-42 302.2 19.2 201 56-275 3-231 (252)
31 COG1122 CbiO ABC-type cobalt t 100.0 2.9E-37 6.3E-42 307.9 22.0 201 56-276 3-229 (235)
32 COG1117 PstB ABC-type phosphat 100.0 1.3E-37 2.8E-42 295.1 17.4 199 55-274 6-236 (253)
33 PRK09452 potA putrescine/sperm 100.0 6.1E-37 1.3E-41 327.2 22.8 199 55-274 13-233 (375)
34 PRK10851 sulfate/thiosulfate t 100.0 6.2E-37 1.3E-41 325.5 22.5 200 56-274 2-225 (353)
35 COG4152 ABC-type uncharacteriz 100.0 3.3E-37 7.2E-42 297.3 17.4 202 56-281 2-225 (300)
36 COG3840 ThiQ ABC-type thiamine 100.0 1.8E-37 3.9E-42 286.7 14.8 196 56-274 1-218 (231)
37 TIGR03258 PhnT 2-aminoethylpho 100.0 9.4E-37 2E-41 324.6 22.3 201 56-275 5-228 (362)
38 PRK13536 nodulation factor exp 100.0 1.5E-36 3.3E-41 320.9 23.1 201 54-276 39-262 (340)
39 PRK11607 potG putrescine trans 100.0 2.3E-36 5.1E-41 323.3 24.2 201 54-275 17-239 (377)
40 cd03261 ABC_Org_Solvent_Resist 100.0 1.7E-36 3.8E-41 305.8 21.2 198 57-274 1-225 (235)
41 COG0411 LivG ABC-type branched 100.0 3.7E-37 8E-42 299.4 15.5 202 55-275 3-239 (250)
42 COG1137 YhbG ABC-type (unclass 100.0 1.2E-37 2.5E-42 292.3 10.3 201 55-275 3-228 (243)
43 PRK11000 maltose/maltodextrin 100.0 3.6E-36 7.8E-41 321.9 22.3 198 56-274 3-222 (369)
44 COG4604 CeuD ABC-type enteroch 100.0 3.2E-37 6.9E-42 288.5 11.1 200 56-274 1-224 (252)
45 cd03265 ABC_DrrA DrrA is the A 100.0 7.1E-36 1.5E-40 298.3 21.0 196 57-273 1-219 (220)
46 PRK11153 metN DL-methionine tr 100.0 8.2E-36 1.8E-40 316.5 22.2 202 56-274 1-229 (343)
47 TIGR01288 nodI ATP-binding ABC 100.0 1.2E-35 2.5E-40 310.7 22.6 200 55-276 3-225 (303)
48 cd03296 ABC_CysA_sulfate_impor 100.0 1.1E-35 2.3E-40 300.8 21.6 200 56-274 2-225 (239)
49 COG0444 DppD ABC-type dipeptid 100.0 1E-35 2.2E-40 301.3 20.7 206 57-274 2-242 (316)
50 cd03259 ABC_Carb_Solutes_like 100.0 7.1E-36 1.5E-40 296.8 19.3 191 57-268 1-213 (213)
51 TIGR03522 GldA_ABC_ATP gliding 100.0 1.7E-35 3.7E-40 309.1 22.4 198 56-276 2-222 (301)
52 PRK15079 oligopeptide ABC tran 100.0 2E-35 4.4E-40 311.4 22.5 214 55-274 7-250 (331)
53 PRK09536 btuD corrinoid ABC tr 100.0 1.3E-35 2.9E-40 318.7 20.9 198 56-273 3-226 (402)
54 cd03258 ABC_MetN_methionine_tr 100.0 1.9E-35 4.2E-40 297.8 20.5 202 56-274 1-229 (233)
55 COG4559 ABC-type hemin transpo 100.0 7.9E-36 1.7E-40 282.4 16.5 199 56-274 1-229 (259)
56 cd03301 ABC_MalK_N The N-termi 100.0 1.9E-35 4.2E-40 293.6 19.8 191 57-268 1-213 (213)
57 PRK13637 cbiO cobalt transport 100.0 5.4E-35 1.2E-39 303.3 23.3 204 56-275 2-234 (287)
58 PRK13643 cbiO cobalt transport 100.0 4E-35 8.7E-40 304.4 22.3 216 56-289 1-250 (288)
59 PRK09473 oppD oligopeptide tra 100.0 5.9E-35 1.3E-39 308.0 23.7 208 54-274 10-250 (330)
60 PRK11831 putative ABC transpor 100.0 5.2E-35 1.1E-39 300.9 22.2 200 55-274 6-232 (269)
61 TIGR01186 proV glycine betaine 100.0 2.8E-35 6E-40 312.6 20.6 186 83-274 5-218 (363)
62 cd03256 ABC_PhnC_transporter A 100.0 4E-35 8.8E-40 296.8 20.4 201 57-275 1-234 (241)
63 PRK13650 cbiO cobalt transport 100.0 7.6E-35 1.6E-39 301.1 21.9 200 56-274 4-228 (279)
64 cd03219 ABC_Mj1267_LivG_branch 100.0 6.1E-35 1.3E-39 294.6 20.6 198 57-274 1-231 (236)
65 PRK13631 cbiO cobalt transport 100.0 1.2E-34 2.7E-39 304.3 23.6 215 54-286 19-279 (320)
66 TIGR00960 3a0501s02 Type II (G 100.0 4E-35 8.6E-40 292.0 18.9 189 56-264 1-216 (216)
67 TIGR01188 drrA daunorubicin re 100.0 4.7E-35 1E-39 306.1 20.0 187 84-277 6-215 (302)
68 cd03295 ABC_OpuCA_Osmoprotecti 100.0 8.7E-35 1.9E-39 294.7 21.0 198 57-274 1-224 (242)
69 PRK13634 cbiO cobalt transport 100.0 1.2E-34 2.5E-39 301.3 22.4 202 56-274 2-234 (290)
70 cd03293 ABC_NrtD_SsuB_transpor 100.0 6.8E-35 1.5E-39 291.2 19.8 194 57-270 1-218 (220)
71 PRK13647 cbiO cobalt transport 100.0 1.3E-34 2.8E-39 298.6 22.4 197 56-273 4-225 (274)
72 cd03218 ABC_YhbG The ABC trans 100.0 8.6E-35 1.9E-39 292.8 20.5 196 57-274 1-221 (232)
73 cd03266 ABC_NatA_sodium_export 100.0 7.2E-35 1.6E-39 290.6 19.8 195 56-268 1-218 (218)
74 PRK13651 cobalt transporter AT 100.0 1.2E-34 2.7E-39 302.5 22.2 201 56-274 2-253 (305)
75 TIGR02315 ABC_phnC phosphonate 100.0 4.6E-35 1E-39 296.8 18.3 200 56-273 1-233 (243)
76 PRK09493 glnQ glutamine ABC tr 100.0 1.1E-34 2.4E-39 293.5 21.0 198 56-274 1-224 (240)
77 PRK11022 dppD dipeptide transp 100.0 1.5E-34 3.2E-39 304.6 22.7 206 56-274 3-242 (326)
78 COG0410 LivF ABC-type branched 100.0 6.5E-35 1.4E-39 281.6 18.1 199 55-275 2-226 (237)
79 cd03260 ABC_PstB_phosphate_tra 100.0 5E-35 1.1E-39 293.6 17.9 193 57-272 1-226 (227)
80 cd03263 ABC_subfamily_A The AB 100.0 9.5E-35 2.1E-39 290.1 19.8 196 57-273 1-219 (220)
81 PRK10070 glycine betaine trans 100.0 1.3E-34 2.8E-39 311.0 22.0 212 56-274 4-253 (400)
82 COG4175 ProV ABC-type proline/ 100.0 1.9E-35 4.2E-40 294.6 14.1 213 56-274 4-253 (386)
83 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2E-34 4.4E-39 290.9 21.9 198 56-275 1-221 (236)
84 PRK11308 dppF dipeptide transp 100.0 2.1E-34 4.6E-39 303.4 22.8 211 55-275 4-244 (327)
85 PRK13646 cbiO cobalt transport 100.0 1.4E-34 3.1E-39 300.1 21.0 202 56-274 2-234 (286)
86 PRK11264 putative amino-acid A 100.0 2.1E-34 4.5E-39 293.4 21.6 198 56-274 3-232 (250)
87 cd03269 ABC_putative_ATPase Th 100.0 1.4E-34 3E-39 286.9 19.7 188 57-268 1-210 (210)
88 PRK13636 cbiO cobalt transport 100.0 2.2E-34 4.7E-39 298.3 20.9 199 56-274 5-230 (283)
89 cd03268 ABC_BcrA_bacitracin_re 100.0 1.3E-34 2.9E-39 286.6 18.3 186 57-268 1-208 (208)
90 PRK14267 phosphate ABC transpo 100.0 3.7E-34 8.1E-39 292.0 22.0 201 56-274 4-236 (253)
91 cd03224 ABC_TM1139_LivF_branch 100.0 1.9E-34 4.1E-39 288.3 19.3 194 57-274 1-220 (222)
92 TIGR00972 3a0107s01c2 phosphat 100.0 3.2E-34 7E-39 291.4 21.3 199 56-274 1-231 (247)
93 TIGR03415 ABC_choXWV_ATP choli 100.0 1.9E-34 4.1E-39 307.6 20.5 212 57-274 1-253 (382)
94 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.5E-34 3.2E-39 288.3 18.3 190 57-264 1-218 (218)
95 TIGR03005 ectoine_ehuA ectoine 100.0 3E-34 6.6E-39 292.5 20.8 198 57-274 1-235 (252)
96 PRK11629 lolD lipoprotein tran 100.0 4.6E-34 1E-38 287.7 21.4 197 56-270 5-229 (233)
97 PRK10619 histidine/lysine/argi 100.0 5.4E-34 1.2E-38 291.5 21.9 198 56-274 5-240 (257)
98 TIGR01257 rim_protein retinal- 100.0 4.4E-32 9.5E-37 332.5 42.5 202 55-277 927-1151(2272)
99 PRK10895 lipopolysaccharide AB 100.0 3.5E-34 7.6E-39 290.1 20.2 198 56-274 3-225 (241)
100 PRK13652 cbiO cobalt transport 100.0 4.9E-34 1.1E-38 294.8 21.6 199 56-274 3-226 (277)
101 COG4181 Predicted ABC-type tra 100.0 1.4E-34 3E-39 265.0 15.1 193 56-266 6-226 (228)
102 PRK09984 phosphonate/organopho 100.0 4.3E-34 9.3E-39 293.1 20.6 202 56-273 4-240 (262)
103 PRK13635 cbiO cobalt transport 100.0 3.9E-34 8.5E-39 295.7 20.5 199 56-274 5-228 (279)
104 PRK11300 livG leucine/isoleuci 100.0 5.9E-34 1.3E-38 290.8 21.4 200 56-274 5-242 (255)
105 PRK14247 phosphate ABC transpo 100.0 6.9E-34 1.5E-38 289.5 21.8 201 56-274 3-233 (250)
106 PRK13640 cbiO cobalt transport 100.0 4.5E-34 9.8E-39 295.8 20.7 203 55-274 4-231 (282)
107 PRK11247 ssuB aliphatic sulfon 100.0 4E-34 8.6E-39 291.8 20.0 187 55-271 11-219 (257)
108 PRK15093 antimicrobial peptide 100.0 7E-34 1.5E-38 300.4 22.4 207 56-274 3-247 (330)
109 PRK11248 tauB taurine transpor 100.0 5.6E-34 1.2E-38 290.8 20.8 192 56-271 1-216 (255)
110 PRK10575 iron-hydroxamate tran 100.0 4.9E-34 1.1E-38 293.0 20.3 200 56-274 11-236 (265)
111 cd03257 ABC_NikE_OppD_transpor 100.0 5.2E-34 1.1E-38 286.2 19.9 197 56-268 1-228 (228)
112 PRK11614 livF leucine/isoleuci 100.0 5E-34 1.1E-38 288.2 19.7 195 56-274 5-225 (237)
113 PRK11124 artP arginine transpo 100.0 7.9E-34 1.7E-38 287.7 21.0 197 56-273 2-228 (242)
114 PRK14268 phosphate ABC transpo 100.0 1.3E-33 2.8E-38 288.9 22.4 199 55-274 11-241 (258)
115 PRK13641 cbiO cobalt transport 100.0 8.7E-34 1.9E-38 294.4 21.4 201 56-274 2-233 (287)
116 TIGR03411 urea_trans_UrtD urea 100.0 1E-33 2.2E-38 286.9 21.3 198 56-274 2-230 (242)
117 TIGR02673 FtsE cell division A 100.0 6.4E-34 1.4E-38 282.9 19.2 187 56-263 1-214 (214)
118 PRK13548 hmuV hemin importer A 100.0 1.1E-33 2.3E-38 289.4 21.3 198 56-274 2-229 (258)
119 PRK11231 fecE iron-dicitrate t 100.0 8.7E-34 1.9E-38 289.6 20.5 199 56-274 2-226 (255)
120 PRK14273 phosphate ABC transpo 100.0 1.4E-33 3E-38 288.0 21.9 200 55-274 6-237 (254)
121 PRK14242 phosphate transporter 100.0 1.5E-33 3.2E-38 287.6 22.0 199 55-273 5-235 (253)
122 PRK13639 cbiO cobalt transport 100.0 1.7E-33 3.7E-38 290.5 22.7 197 56-274 1-225 (275)
123 PRK10253 iron-enterobactin tra 100.0 7.9E-34 1.7E-38 291.5 20.1 200 56-274 7-232 (265)
124 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.7E-34 1E-38 293.8 18.4 196 58-274 26-249 (269)
125 TIGR02769 nickel_nikE nickel i 100.0 1.3E-33 2.9E-38 289.9 21.6 208 56-274 2-239 (265)
126 PRK13633 cobalt transporter AT 100.0 1.4E-33 3E-38 292.0 21.8 204 55-275 3-233 (280)
127 cd03264 ABC_drug_resistance_li 100.0 7.7E-34 1.7E-38 281.7 19.1 188 57-268 1-211 (211)
128 PRK13644 cbiO cobalt transport 100.0 9.5E-34 2.1E-38 292.1 20.3 197 56-274 1-223 (274)
129 PRK13632 cbiO cobalt transport 100.0 1E-33 2.2E-38 291.6 20.5 200 55-274 6-230 (271)
130 PRK10771 thiQ thiamine transpo 100.0 1E-33 2.3E-38 285.0 19.8 196 56-274 1-218 (232)
131 cd03298 ABC_ThiQ_thiamine_tran 100.0 7E-34 1.5E-38 282.0 18.2 189 57-268 1-211 (211)
132 PRK10744 pstB phosphate transp 100.0 2.1E-33 4.6E-38 287.6 22.3 200 55-274 12-243 (260)
133 PRK11144 modC molybdate transp 100.0 9.5E-34 2.1E-38 301.7 20.4 190 56-275 1-218 (352)
134 PRK13638 cbiO cobalt transport 100.0 1.2E-33 2.7E-38 291.1 20.6 197 56-274 1-224 (271)
135 cd03300 ABC_PotA_N PotA is an 100.0 1.6E-33 3.6E-38 283.6 21.0 197 57-274 1-219 (232)
136 COG1123 ATPase components of v 100.0 1.2E-33 2.6E-38 305.8 21.3 208 56-276 5-245 (539)
137 COG4525 TauB ABC-type taurine 100.0 1.2E-33 2.5E-38 264.1 18.2 200 55-276 2-225 (259)
138 PRK10908 cell division protein 100.0 1.2E-33 2.6E-38 282.6 19.8 190 56-266 1-217 (222)
139 PRK14269 phosphate ABC transpo 100.0 1.8E-33 3.9E-38 285.8 21.3 200 56-274 2-229 (246)
140 PRK13648 cbiO cobalt transport 100.0 2.2E-33 4.8E-38 288.9 22.2 200 55-274 6-230 (269)
141 cd03292 ABC_FtsE_transporter F 100.0 9.4E-34 2E-38 281.7 18.8 187 57-264 1-214 (214)
142 TIGR03410 urea_trans_UrtE urea 100.0 8.5E-34 1.8E-38 285.2 18.4 193 57-273 1-219 (230)
143 TIGR00968 3a0106s01 sulfate AB 100.0 1.7E-33 3.7E-38 284.3 20.5 197 57-274 1-219 (237)
144 PRK14235 phosphate transporter 100.0 2.4E-33 5.2E-38 288.2 21.9 201 55-274 18-250 (267)
145 cd03262 ABC_HisP_GlnQ_permease 100.0 1.1E-33 2.4E-38 281.0 18.3 187 57-264 1-213 (213)
146 PRK14250 phosphate ABC transpo 100.0 1.4E-33 3.1E-38 285.7 19.2 193 56-274 3-220 (241)
147 TIGR01277 thiQ thiamine ABC tr 100.0 1.8E-33 3.8E-38 279.6 19.5 190 57-269 1-212 (213)
148 TIGR02211 LolD_lipo_ex lipopro 100.0 1.7E-33 3.7E-38 281.2 19.5 191 57-265 2-220 (221)
149 PRK14274 phosphate ABC transpo 100.0 3.5E-33 7.6E-38 285.8 22.0 200 55-274 11-242 (259)
150 TIGR03873 F420-0_ABC_ATP propo 100.0 2.3E-33 4.9E-38 286.7 20.4 198 57-274 2-225 (256)
151 cd03226 ABC_cobalt_CbiO_domain 100.0 7.4E-34 1.6E-38 280.6 16.1 182 58-265 1-205 (205)
152 cd03299 ABC_ModC_like Archeal 100.0 3.5E-33 7.6E-38 281.7 21.1 196 57-274 1-218 (235)
153 PRK14256 phosphate ABC transpo 100.0 4.7E-33 1E-37 283.7 22.1 200 56-274 4-235 (252)
154 COG1123 ATPase components of v 100.0 2.8E-33 6.1E-38 302.9 21.6 214 53-275 277-519 (539)
155 PRK15112 antimicrobial peptide 100.0 3.2E-33 6.9E-38 287.3 21.0 208 56-274 4-238 (267)
156 TIGR02142 modC_ABC molybdenum 100.0 2.3E-33 5.1E-38 299.1 20.6 190 61-275 4-221 (354)
157 PRK13649 cbiO cobalt transport 100.0 5.3E-33 1.2E-37 287.7 22.6 201 56-274 2-233 (280)
158 PRK14241 phosphate transporter 100.0 5.1E-33 1.1E-37 284.5 22.2 200 56-274 4-241 (258)
159 PRK10584 putative ABC transpor 100.0 3.8E-33 8.1E-38 280.1 20.7 195 55-267 5-227 (228)
160 PRK14239 phosphate transporter 100.0 6.6E-33 1.4E-37 282.6 22.7 198 56-274 5-235 (252)
161 PRK13645 cbiO cobalt transport 100.0 3.9E-33 8.5E-38 289.9 21.2 202 56-274 6-239 (289)
162 COG2274 SunT ABC-type bacterio 100.0 8E-34 1.7E-38 322.3 17.3 193 55-276 470-697 (709)
163 PRK14245 phosphate ABC transpo 100.0 5.8E-33 1.3E-37 282.7 21.5 199 55-274 2-233 (250)
164 COG4987 CydC ABC-type transpor 100.0 3.3E-34 7.2E-39 304.1 12.6 191 56-275 336-561 (573)
165 PRK13642 cbiO cobalt transport 100.0 4.6E-33 1E-37 287.6 20.7 200 56-274 4-228 (277)
166 cd03225 ABC_cobalt_CbiO_domain 100.0 2.3E-33 4.9E-38 278.4 17.7 186 58-263 1-211 (211)
167 COG4988 CydD ABC-type transpor 100.0 1.4E-33 2.9E-38 304.1 17.3 191 55-275 319-543 (559)
168 PRK14270 phosphate ABC transpo 100.0 8.5E-33 1.8E-37 281.7 21.8 199 55-274 3-234 (251)
169 TIGR01978 sufC FeS assembly AT 100.0 5.7E-33 1.2E-37 281.5 20.3 198 57-274 1-233 (243)
170 PRK14259 phosphate ABC transpo 100.0 6.7E-33 1.4E-37 285.2 20.9 200 54-275 11-253 (269)
171 cd03267 ABC_NatA_like Similar 100.0 3.6E-33 7.8E-38 281.8 18.5 205 58-268 2-236 (236)
172 PRK13547 hmuV hemin importer A 100.0 4.5E-33 9.7E-38 286.4 19.4 202 56-273 1-242 (272)
173 PRK14258 phosphate ABC transpo 100.0 1.4E-32 2.9E-37 281.8 22.3 201 56-275 7-245 (261)
174 PRK14240 phosphate transporter 100.0 1.3E-32 2.9E-37 280.0 22.1 199 56-274 3-233 (250)
175 PRK14237 phosphate transporter 100.0 1.4E-32 3E-37 282.6 22.2 200 55-274 19-250 (267)
176 cd03234 ABCG_White The White s 100.0 8.7E-33 1.9E-37 277.2 19.9 197 56-268 3-226 (226)
177 cd03235 ABC_Metallic_Cations A 100.0 3E-33 6.4E-38 278.0 16.2 187 58-268 1-213 (213)
178 PRK14248 phosphate ABC transpo 100.0 1.9E-32 4.1E-37 281.8 22.4 200 55-274 20-251 (268)
179 PRK14262 phosphate ABC transpo 100.0 1.5E-32 3.2E-37 279.7 21.4 200 56-275 3-234 (250)
180 PRK14254 phosphate ABC transpo 100.0 2.6E-32 5.6E-37 282.9 23.5 201 52-274 35-268 (285)
181 TIGR03740 galliderm_ABC gallid 100.0 7E-33 1.5E-37 277.3 18.6 188 57-272 1-210 (223)
182 PRK14272 phosphate ABC transpo 100.0 1.8E-32 3.8E-37 279.5 21.8 200 56-274 4-235 (252)
183 PRK14275 phosphate ABC transpo 100.0 2.6E-32 5.6E-37 283.1 23.2 200 54-274 37-269 (286)
184 PRK14244 phosphate ABC transpo 100.0 1.3E-32 2.9E-37 280.2 20.6 199 57-274 6-236 (251)
185 PRK13549 xylose transporter AT 100.0 6.4E-33 1.4E-37 310.1 19.5 200 56-273 5-230 (506)
186 PRK10762 D-ribose transporter 100.0 6.7E-33 1.4E-37 309.6 19.4 198 56-273 4-228 (501)
187 PRK14261 phosphate ABC transpo 100.0 2.5E-32 5.5E-37 278.5 21.8 199 56-274 6-236 (253)
188 PRK11701 phnK phosphonate C-P 100.0 2.5E-32 5.4E-37 279.3 21.8 199 56-274 6-240 (258)
189 PRK14251 phosphate ABC transpo 100.0 2.5E-32 5.4E-37 278.2 21.6 198 56-274 4-234 (251)
190 PRK14253 phosphate ABC transpo 100.0 2.3E-32 5E-37 278.1 20.8 197 56-273 3-231 (249)
191 PRK10261 glutathione transport 100.0 1.7E-32 3.7E-37 313.1 22.2 204 55-274 11-257 (623)
192 cd03297 ABC_ModC_molybdenum_tr 100.0 1.5E-32 3.2E-37 273.2 18.9 185 57-268 2-214 (214)
193 PRK14249 phosphate ABC transpo 100.0 3.3E-32 7.1E-37 277.4 21.8 199 56-274 4-234 (251)
194 PRK14255 phosphate ABC transpo 100.0 4.4E-32 9.5E-37 276.6 22.6 200 55-274 4-235 (252)
195 COG4598 HisP ABC-type histidin 100.0 1.4E-33 2.9E-38 260.2 10.1 198 56-274 6-240 (256)
196 PRK14271 phosphate ABC transpo 100.0 5.7E-32 1.2E-36 279.1 23.2 200 55-274 20-250 (276)
197 PRK10261 glutathione transport 100.0 2.5E-32 5.5E-37 311.7 22.5 212 54-274 311-552 (623)
198 PRK10418 nikD nickel transport 100.0 3.1E-32 6.8E-37 278.0 20.7 198 56-274 4-229 (254)
199 PRK09700 D-allose transporter 100.0 1.3E-32 2.7E-37 308.2 19.4 198 56-273 5-232 (510)
200 TIGR01257 rim_protein retinal- 100.0 1.9E-32 4E-37 335.8 22.5 204 55-278 1936-2162(2272)
201 PRK14238 phosphate transporter 100.0 4.4E-32 9.6E-37 279.4 21.7 199 55-273 23-253 (271)
202 KOG0055 Multidrug/pheromone ex 100.0 5.3E-31 1.1E-35 304.0 32.9 194 54-275 348-576 (1228)
203 PRK14260 phosphate ABC transpo 100.0 5E-32 1.1E-36 277.2 21.9 199 56-274 7-242 (259)
204 PRK15439 autoinducer 2 ABC tra 100.0 2.3E-32 4.9E-37 305.7 20.9 193 55-273 10-227 (510)
205 TIGR02982 heterocyst_DevA ABC 100.0 2.3E-32 5E-37 273.0 18.6 191 57-264 2-219 (220)
206 PRK14236 phosphate transporter 100.0 6.5E-32 1.4E-36 278.4 22.4 199 55-274 24-255 (272)
207 COG4172 ABC-type uncharacteriz 100.0 6.5E-32 1.4E-36 276.5 21.9 214 53-275 273-516 (534)
208 PRK10419 nikE nickel transport 100.0 5.1E-32 1.1E-36 278.4 21.1 208 56-274 3-240 (268)
209 cd03233 ABC_PDR_domain1 The pl 100.0 3.9E-32 8.5E-37 267.7 18.9 180 56-268 3-202 (202)
210 KOG0057 Mitochondrial Fe/S clu 100.0 1.4E-32 3E-37 292.0 16.1 189 56-275 351-574 (591)
211 PRK10247 putative ABC transpor 100.0 2.8E-32 6E-37 273.3 17.6 191 55-270 6-222 (225)
212 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.9E-32 4.2E-37 317.1 18.9 188 56-275 451-673 (686)
213 PRK11174 cysteine/glutathione 100.0 1.1E-32 2.3E-37 314.1 16.5 189 56-275 349-572 (588)
214 PRK11176 lipid transporter ATP 100.0 1.5E-32 3.2E-37 312.7 16.8 192 56-275 341-567 (582)
215 PRK14246 phosphate ABC transpo 100.0 9.9E-32 2.1E-36 274.6 21.1 201 55-274 9-240 (257)
216 TIGR02323 CP_lyasePhnK phospho 100.0 1.1E-31 2.4E-36 273.8 21.3 199 56-274 3-237 (253)
217 PRK15134 microcin C ABC transp 100.0 8.5E-32 1.8E-36 302.6 22.3 206 56-274 5-245 (529)
218 PRK11160 cysteine/glutathione 100.0 3.4E-32 7.4E-37 308.5 19.1 191 56-275 338-562 (574)
219 PRK14257 phosphate ABC transpo 100.0 1.4E-31 3E-36 282.1 22.3 202 54-274 78-312 (329)
220 PRK15134 microcin C ABC transp 100.0 4.4E-32 9.6E-37 304.9 19.8 212 54-274 273-514 (529)
221 TIGR01184 ntrCD nitrate transp 100.0 4E-32 8.7E-37 273.1 17.2 178 87-271 1-200 (230)
222 PRK14265 phosphate ABC transpo 100.0 1.8E-31 3.9E-36 275.2 22.4 199 54-274 18-257 (274)
223 PRK10790 putative multidrug tr 100.0 4E-32 8.6E-37 309.6 19.3 188 56-274 340-562 (592)
224 PRK14252 phosphate ABC transpo 100.0 2.1E-31 4.6E-36 273.6 22.4 199 55-274 15-248 (265)
225 PRK14266 phosphate ABC transpo 100.0 1.9E-31 4E-36 271.6 21.6 199 56-274 3-233 (250)
226 PRK11288 araG L-arabinose tran 100.0 7.9E-32 1.7E-36 301.0 20.5 194 56-269 4-223 (501)
227 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-31 2.7E-36 300.9 21.8 205 54-275 277-517 (520)
228 KOG0058 Peptide exporter, ABC 100.0 2.7E-32 5.8E-37 299.3 15.8 193 55-275 464-691 (716)
229 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.2E-32 4.7E-37 317.9 16.0 189 56-275 477-700 (710)
230 TIGR03375 type_I_sec_LssB type 100.0 4.5E-32 9.8E-37 314.4 18.6 193 56-277 463-690 (694)
231 PRK14243 phosphate transporter 100.0 1.6E-31 3.5E-36 274.2 20.3 197 56-274 10-247 (264)
232 TIGR00958 3a01208 Conjugate Tr 100.0 3.8E-32 8.3E-37 315.0 17.6 190 56-275 478-702 (711)
233 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-31 3.3E-36 300.1 21.7 200 57-277 1-260 (520)
234 TIGR02633 xylG D-xylose ABC tr 100.0 8.8E-32 1.9E-36 300.7 19.7 200 56-273 1-228 (500)
235 TIGR02770 nickel_nikD nickel i 100.0 1.1E-31 2.3E-36 270.0 18.4 186 86-274 1-214 (230)
236 PRK14263 phosphate ABC transpo 100.0 3.2E-31 6.9E-36 271.5 21.7 197 56-274 8-244 (261)
237 COG1129 MglA ABC-type sugar tr 100.0 9.5E-32 2.1E-36 289.3 18.1 195 55-269 7-228 (500)
238 cd03289 ABCC_CFTR2 The CFTR su 100.0 7.2E-32 1.6E-36 277.3 16.2 189 56-275 2-225 (275)
239 cd03213 ABCG_EPDR ABCG transpo 100.0 2E-31 4.4E-36 260.9 18.5 172 56-268 3-194 (194)
240 cd03252 ABCC_Hemolysin The ABC 100.0 8.2E-32 1.8E-36 272.0 16.3 194 57-275 1-225 (237)
241 PRK14264 phosphate ABC transpo 100.0 7.6E-31 1.6E-35 274.5 23.6 202 54-274 43-288 (305)
242 CHL00131 ycf16 sulfate ABC tra 100.0 5.7E-31 1.2E-35 268.4 22.0 198 56-273 7-239 (252)
243 TIGR03608 L_ocin_972_ABC putat 100.0 1.7E-31 3.8E-36 263.8 17.7 178 59-259 1-206 (206)
244 cd03232 ABC_PDR_domain2 The pl 100.0 2.5E-31 5.3E-36 260.0 18.5 169 56-268 3-192 (192)
245 COG4161 ArtP ABC-type arginine 100.0 1.2E-31 2.6E-36 243.2 14.6 196 56-272 2-227 (242)
246 cd03254 ABCC_Glucan_exporter_l 100.0 9.5E-32 2.1E-36 270.1 15.6 190 56-275 2-226 (229)
247 PRK10982 galactose/methyl gala 100.0 1.7E-31 3.6E-36 297.8 18.7 194 59-273 1-221 (491)
248 cd03251 ABCC_MsbA MsbA is an e 100.0 1.8E-31 4E-36 268.9 17.1 194 57-275 1-225 (234)
249 PRK15056 manganese/iron transp 100.0 3.3E-31 7.1E-36 273.1 18.9 197 56-273 6-228 (272)
250 TIGR01193 bacteriocin_ABC ABC- 100.0 6.5E-32 1.4E-36 313.8 15.2 190 56-275 473-697 (708)
251 cd03245 ABCC_bacteriocin_expor 100.0 1.1E-31 2.4E-36 268.0 14.6 183 57-268 3-220 (220)
252 COG3845 ABC-type uncharacteriz 100.0 2.7E-31 5.8E-36 280.2 18.0 194 56-269 4-223 (501)
253 COG1132 MdlB ABC-type multidru 100.0 8.1E-32 1.8E-36 305.5 15.1 194 56-275 328-552 (567)
254 PRK13657 cyclic beta-1,2-gluca 100.0 2.1E-31 4.6E-36 303.3 18.3 189 56-274 334-557 (588)
255 PRK13543 cytochrome c biogenes 100.0 5.9E-31 1.3E-35 261.7 18.8 181 55-261 10-212 (214)
256 PRK13549 xylose transporter AT 100.0 3.1E-31 6.8E-36 296.5 18.2 202 55-273 258-492 (506)
257 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.4E-31 7.3E-36 267.7 16.6 196 57-276 1-227 (238)
258 cd03230 ABC_DR_subfamily_A Thi 100.0 4.3E-31 9.4E-36 253.9 16.1 172 57-264 1-173 (173)
259 cd03229 ABC_Class3 This class 100.0 3E-31 6.5E-36 256.2 15.0 156 57-263 1-178 (178)
260 PRK13538 cytochrome c biogenes 100.0 7.5E-31 1.6E-35 259.0 17.9 179 56-259 1-202 (204)
261 PRK03695 vitamin B12-transport 100.0 5.8E-31 1.3E-35 267.6 17.3 179 86-273 11-220 (248)
262 PRK09544 znuC high-affinity zi 100.0 1E-30 2.2E-35 266.0 18.7 181 56-274 4-208 (251)
263 TIGR02203 MsbA_lipidA lipid A 100.0 3.5E-31 7.7E-36 300.7 16.9 191 56-274 330-555 (571)
264 COG4619 ABC-type uncharacteriz 100.0 3.6E-32 7.9E-37 248.3 6.6 174 82-264 14-212 (223)
265 TIGR01846 type_I_sec_HlyB type 100.0 5.2E-31 1.1E-35 305.5 17.7 191 56-275 455-680 (694)
266 PRK09580 sufC cysteine desulfu 100.0 2.7E-30 5.8E-35 262.8 20.6 199 56-274 1-234 (248)
267 PRK09700 D-allose transporter 100.0 6.8E-31 1.5E-35 294.1 17.6 194 55-270 264-493 (510)
268 cd03215 ABC_Carb_Monos_II This 100.0 1.1E-30 2.4E-35 253.2 16.8 155 56-264 4-182 (182)
269 COG0396 sufC Cysteine desulfur 100.0 3.8E-30 8.2E-35 247.5 20.0 211 55-284 2-242 (251)
270 TIGR02204 MsbA_rel ABC transpo 100.0 4.5E-31 9.7E-36 300.2 16.1 192 56-275 337-563 (576)
271 cd03244 ABCC_MRP_domain2 Domai 100.0 6E-31 1.3E-35 262.9 14.9 184 56-269 2-220 (221)
272 cd03253 ABCC_ATM1_transporter 100.0 9.5E-31 2.1E-35 264.1 16.4 193 57-275 1-224 (236)
273 cd03231 ABC_CcmA_heme_exporter 100.0 1.3E-30 2.9E-35 256.7 17.0 175 57-259 1-198 (201)
274 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.1E-30 2.3E-35 258.5 16.2 182 56-270 6-207 (207)
275 PRK10938 putative molybdenum t 100.0 9.3E-31 2E-35 291.8 17.5 189 56-274 3-223 (490)
276 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.6E-30 3.5E-35 255.9 16.9 171 57-277 1-195 (200)
277 TIGR01842 type_I_sec_PrtD type 100.0 1.3E-30 2.8E-35 294.1 18.2 196 56-275 316-542 (544)
278 PRK13546 teichoic acids export 100.0 9.8E-30 2.1E-34 260.4 22.4 203 55-275 3-232 (264)
279 TIGR02633 xylG D-xylose ABC tr 100.0 1.5E-30 3.3E-35 290.7 17.0 201 55-272 256-489 (500)
280 PRK13539 cytochrome c biogenes 100.0 3.7E-30 8E-35 254.6 17.5 177 56-261 2-200 (207)
281 PRK10535 macrolide transporter 100.0 2.4E-29 5.2E-34 288.3 26.7 199 56-273 4-230 (648)
282 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.1E-30 4.5E-35 259.6 15.7 180 57-268 23-224 (224)
283 PRK10789 putative multidrug tr 100.0 2.2E-30 4.8E-35 293.5 17.9 191 56-275 313-538 (569)
284 TIGR02324 CP_lyasePhnL phospho 100.0 5.5E-30 1.2E-34 256.5 18.6 190 56-260 1-223 (224)
285 COG4148 ModC ABC-type molybdat 100.0 5.9E-31 1.3E-35 258.4 10.6 176 88-275 15-218 (352)
286 COG4172 ABC-type uncharacteriz 100.0 1E-29 2.3E-34 260.4 20.0 207 55-274 5-246 (534)
287 COG4586 ABC-type uncharacteriz 100.0 1.7E-30 3.7E-35 254.7 13.4 217 56-278 3-249 (325)
288 cd03246 ABCC_Protease_Secretio 100.0 2.8E-30 6.1E-35 248.3 14.7 171 57-264 1-173 (173)
289 TIGR01192 chvA glucan exporter 100.0 4.1E-30 8.9E-35 292.0 18.5 194 56-275 334-558 (585)
290 PRK10762 D-ribose transporter 100.0 4.7E-30 1E-34 286.7 18.5 194 55-273 256-482 (501)
291 PLN03232 ABC transporter C fam 100.0 1.1E-30 2.4E-35 322.4 14.6 190 56-275 1234-1458(1495)
292 cd03288 ABCC_SUR2 The SUR doma 100.0 2.7E-30 5.7E-35 264.2 15.0 195 55-275 18-243 (257)
293 PRK13540 cytochrome c biogenes 100.0 8.6E-30 1.9E-34 250.7 17.5 174 56-257 1-197 (200)
294 COG4618 ArpD ABC-type protease 100.0 4.3E-30 9.3E-35 270.5 16.1 197 55-279 333-564 (580)
295 cd03248 ABCC_TAP TAP, the Tran 100.0 2.6E-30 5.7E-35 259.2 13.7 186 55-264 10-226 (226)
296 PRK13545 tagH teichoic acids e 100.0 2E-29 4.3E-34 274.1 21.5 192 56-277 21-234 (549)
297 PTZ00265 multidrug resistance 100.0 1.9E-30 4.1E-35 317.8 15.2 197 56-275 1165-1452(1466)
298 TIGR01189 ccmA heme ABC export 100.0 9.8E-30 2.1E-34 249.8 16.5 174 57-258 1-197 (198)
299 COG4674 Uncharacterized ABC-ty 100.0 1.1E-29 2.3E-34 237.7 15.1 200 55-275 4-235 (249)
300 PLN03130 ABC transporter C fam 100.0 6.7E-30 1.4E-34 315.7 18.1 190 56-275 1237-1461(1622)
301 PRK11288 araG L-arabinose tran 100.0 6E-30 1.3E-34 285.9 15.9 195 55-273 256-483 (501)
302 cd03247 ABCC_cytochrome_bd The 100.0 9.2E-30 2E-34 245.8 14.6 159 57-268 1-178 (178)
303 KOG0056 Heavy metal exporter H 100.0 2.2E-30 4.8E-35 269.6 9.8 191 55-275 536-761 (790)
304 TIGR00957 MRP_assoc_pro multi 100.0 6.9E-30 1.5E-34 315.7 15.2 190 56-275 1284-1508(1522)
305 TIGR01187 potA spermidine/putr 100.0 2.2E-29 4.8E-34 265.6 16.6 167 102-274 1-189 (325)
306 PRK10522 multidrug transporter 100.0 3.1E-29 6.7E-34 283.0 18.5 180 56-267 322-530 (547)
307 KOG0055 Multidrug/pheromone ex 100.0 1.3E-29 2.8E-34 292.6 15.1 192 56-275 987-1213(1228)
308 PRK15439 autoinducer 2 ABC tra 100.0 3.1E-29 6.7E-34 280.5 17.6 195 54-273 266-490 (510)
309 COG4608 AppF ABC-type oligopep 100.0 5.7E-29 1.2E-33 247.3 17.3 174 55-275 3-199 (268)
310 PRK15064 ABC transporter ATP-b 100.0 6.6E-29 1.4E-33 279.3 19.8 187 56-274 1-241 (530)
311 TIGR02857 CydD thiol reductant 100.0 2.8E-29 6E-34 282.6 16.3 175 56-259 320-529 (529)
312 cd03214 ABC_Iron-Siderophores_ 100.0 2.1E-29 4.5E-34 243.8 13.1 156 58-268 1-180 (180)
313 PRK11819 putative ABC transpor 100.0 7.9E-29 1.7E-33 279.9 19.2 188 55-273 5-248 (556)
314 cd03228 ABCC_MRP_Like The MRP 100.0 3.7E-29 8.1E-34 240.0 14.0 169 57-263 1-171 (171)
315 PTZ00243 ABC transporter; Prov 100.0 3.1E-29 6.6E-34 309.4 16.8 190 56-275 1308-1533(1560)
316 COG1134 TagH ABC-type polysacc 100.0 1.9E-28 4.2E-33 238.9 18.9 206 56-279 3-240 (249)
317 TIGR03771 anch_rpt_ABC anchore 100.0 5.9E-29 1.3E-33 248.9 15.6 174 92-274 1-200 (223)
318 PRK10938 putative molybdenum t 100.0 6.6E-29 1.4E-33 276.9 17.7 197 54-268 258-485 (490)
319 TIGR01166 cbiO cobalt transpor 100.0 9.3E-29 2E-33 241.3 16.4 156 84-246 5-188 (190)
320 TIGR02868 CydC thiol reductant 100.0 4.5E-29 9.8E-34 280.9 15.5 162 56-245 334-529 (529)
321 cd03216 ABC_Carb_Monos_I This 100.0 1.2E-28 2.5E-33 234.7 15.4 159 57-266 1-162 (163)
322 cd03250 ABCC_MRP_domain1 Domai 100.0 7E-29 1.5E-33 244.9 14.2 170 57-263 1-204 (204)
323 PTZ00265 multidrug resistance 100.0 9.5E-29 2.1E-33 302.9 18.4 189 56-262 382-655 (1466)
324 TIGR01194 cyc_pep_trnsptr cycl 100.0 8.7E-29 1.9E-33 279.6 16.7 184 56-267 337-551 (555)
325 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.3E-28 5E-33 276.0 19.1 189 55-274 3-247 (552)
326 COG1101 PhnK ABC-type uncharac 100.0 7.8E-29 1.7E-33 235.5 12.6 197 56-267 1-230 (263)
327 PRK10982 galactose/methyl gala 100.0 1.6E-28 3.6E-33 273.7 17.2 195 55-271 249-476 (491)
328 PRK15064 ABC transporter ATP-b 100.0 2.8E-28 6.1E-33 274.2 18.7 182 55-275 318-525 (530)
329 cd03290 ABCC_SUR1_N The SUR do 100.0 3.1E-28 6.8E-33 242.8 16.3 176 58-263 2-218 (218)
330 cd03291 ABCC_CFTR1 The CFTR su 100.0 6E-28 1.3E-32 249.1 18.9 177 54-275 37-247 (282)
331 TIGR01271 CFTR_protein cystic 100.0 2.7E-28 5.8E-33 300.8 18.5 190 55-275 1216-1440(1490)
332 COG4167 SapF ABC-type antimicr 100.0 4.3E-28 9.3E-33 224.4 14.5 208 56-274 4-238 (267)
333 PRK13541 cytochrome c biogenes 100.0 6.3E-28 1.4E-32 236.5 16.7 170 56-256 1-192 (195)
334 cd03223 ABCD_peroxisomal_ALDP 100.0 7.1E-28 1.5E-32 229.9 15.2 146 57-263 1-164 (166)
335 KOG0059 Lipid exporter ABCA1 a 100.0 8.9E-28 1.9E-32 282.8 18.8 204 55-279 563-791 (885)
336 PRK11819 putative ABC transpor 100.0 2.9E-27 6.2E-32 267.2 20.2 186 54-275 322-533 (556)
337 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.5E-27 5.4E-32 240.3 16.9 169 86-274 9-206 (246)
338 COG1119 ModF ABC-type molybden 99.9 1.3E-27 2.8E-32 232.8 13.4 197 54-269 29-256 (257)
339 PRK13409 putative ATPase RIL; 99.9 3.5E-27 7.7E-32 266.3 17.6 177 54-269 338-536 (590)
340 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 5.6E-27 1.2E-31 264.8 19.0 185 54-274 320-530 (552)
341 PRK15177 Vi polysaccharide exp 99.9 4.2E-27 9.1E-32 233.8 15.7 171 86-278 2-195 (213)
342 PRK10636 putative ABC transpor 99.9 1.3E-26 2.8E-31 265.0 19.5 182 54-275 310-517 (638)
343 cd03236 ABC_RNaseL_inhibitor_d 99.9 5.4E-27 1.2E-31 238.9 13.4 180 60-268 4-220 (255)
344 COG4136 ABC-type uncharacteriz 99.9 3.5E-27 7.7E-32 211.8 10.3 173 56-246 2-196 (213)
345 PRK11147 ABC transporter ATPas 99.9 3E-26 6.6E-31 262.5 18.0 184 54-273 317-526 (635)
346 PLN03232 ABC transporter C fam 99.9 2.4E-26 5.2E-31 284.0 16.3 181 56-275 614-828 (1495)
347 COG5265 ATM1 ABC-type transpor 99.9 9.4E-27 2E-31 240.4 10.1 191 56-276 262-487 (497)
348 PLN03073 ABC transporter F fam 99.9 1.5E-25 3.2E-30 257.6 21.1 185 55-276 507-715 (718)
349 COG4107 PhnK ABC-type phosphon 99.9 2.9E-26 6.4E-31 210.6 11.7 196 55-274 5-240 (258)
350 TIGR00954 3a01203 Peroxysomal 99.9 3.9E-26 8.4E-31 262.1 15.0 173 55-261 450-653 (659)
351 PLN03130 ABC transporter C fam 99.9 5.3E-26 1.1E-30 281.3 16.6 180 56-274 614-827 (1622)
352 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1E-25 2.3E-30 209.8 13.5 144 57-263 1-144 (144)
353 PRK10636 putative ABC transpor 99.9 2.5E-25 5.4E-30 254.6 18.9 185 56-273 1-234 (638)
354 cd03222 ABC_RNaseL_inhibitor T 99.9 1.3E-25 2.8E-30 215.7 12.9 154 60-271 4-159 (177)
355 PRK11147 ABC transporter ATPas 99.9 4.4E-25 9.5E-30 252.9 19.4 186 56-273 3-241 (635)
356 KOG0054 Multidrug resistance-a 99.9 1.8E-25 3.9E-30 264.1 16.5 193 54-276 1136-1363(1381)
357 TIGR00957 MRP_assoc_pro multi 99.9 3.4E-25 7.4E-30 274.2 17.3 184 56-275 636-850 (1522)
358 cd00267 ABC_ATPase ABC (ATP-bi 99.9 7.5E-25 1.6E-29 207.1 14.1 154 59-263 2-157 (157)
359 COG4138 BtuD ABC-type cobalami 99.9 1.4E-24 3.1E-29 199.8 11.9 187 56-274 3-220 (248)
360 TIGR01271 CFTR_protein cystic 99.9 2.1E-24 4.7E-29 266.4 15.8 167 84-274 439-635 (1490)
361 COG4133 CcmA ABC-type transpor 99.9 2E-24 4.2E-29 202.0 11.5 168 56-247 2-192 (209)
362 PRK13409 putative ATPase RIL; 99.9 1.2E-24 2.6E-29 245.8 11.7 161 84-262 87-287 (590)
363 KOG0054 Multidrug resistance-a 99.9 5.5E-24 1.2E-28 251.6 16.9 181 55-274 517-730 (1381)
364 cd03238 ABC_UvrA The excision 99.9 1.6E-23 3.4E-28 201.1 13.3 135 83-264 7-166 (176)
365 COG4778 PhnL ABC-type phosphon 99.9 3.8E-23 8.3E-28 189.6 13.3 191 56-261 4-227 (235)
366 PLN03073 ABC transporter F fam 99.9 1.3E-23 2.8E-28 241.7 12.1 198 54-273 175-429 (718)
367 PTZ00243 ABC transporter; Prov 99.9 2.7E-23 5.9E-28 256.9 15.0 169 83-274 672-869 (1560)
368 COG0488 Uup ATPase components 99.9 8.1E-23 1.7E-27 225.7 16.9 186 55-272 2-237 (530)
369 COG0488 Uup ATPase components 99.9 9.3E-22 2E-26 217.3 17.7 185 52-276 317-526 (530)
370 PF01061 ABC2_membrane: ABC-2 99.9 1.4E-23 2.9E-28 206.3 1.4 208 344-554 1-210 (210)
371 COG4615 PvdE ABC-type sideroph 99.9 4E-22 8.6E-27 204.2 10.6 180 56-268 322-530 (546)
372 cd03270 ABC_UvrA_I The excisio 99.9 2.8E-21 6E-26 193.7 13.6 170 83-268 7-226 (226)
373 COG3845 ABC-type uncharacteriz 99.9 1.9E-20 4E-25 198.4 19.9 203 52-273 253-490 (501)
374 COG1129 MglA ABC-type sugar tr 99.8 1.1E-20 2.4E-25 203.9 16.0 194 53-270 260-485 (500)
375 cd03271 ABC_UvrA_II The excisi 99.8 3.1E-20 6.7E-25 188.8 13.4 176 84-270 8-261 (261)
376 COG4170 SapD ABC-type antimicr 99.8 1.1E-19 2.4E-24 172.0 12.5 208 56-275 3-248 (330)
377 cd03278 ABC_SMC_barmotin Barmo 99.8 3.6E-20 7.8E-25 181.7 7.0 149 87-261 12-190 (197)
378 PF00005 ABC_tran: ABC transpo 99.8 1.5E-19 3.2E-24 166.5 6.6 98 87-202 1-100 (137)
379 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1.7E-18 3.8E-23 175.4 8.7 168 84-260 15-234 (243)
380 COG4178 ABC-type uncharacteriz 99.7 7E-18 1.5E-22 185.8 13.2 170 55-261 391-588 (604)
381 cd03273 ABC_SMC2_euk Eukaryoti 99.7 5.1E-19 1.1E-23 180.3 3.7 158 97-260 25-242 (251)
382 cd03240 ABC_Rad50 The catalyti 99.7 2.6E-18 5.6E-23 169.5 8.3 149 89-261 15-197 (204)
383 KOG0927 Predicted transporter 99.7 1.1E-17 2.3E-22 178.3 11.7 187 53-277 386-598 (614)
384 KOG2355 Predicted ABC-type tra 99.7 8.4E-17 1.8E-21 152.3 15.5 194 54-275 11-237 (291)
385 PRK00635 excinuclease ABC subu 99.7 4.6E-17 1E-21 198.1 17.6 115 157-275 759-906 (1809)
386 cd03274 ABC_SMC4_euk Eukaryoti 99.7 1.4E-19 3.1E-24 179.4 -4.0 165 56-261 5-204 (212)
387 PRK00349 uvrA excinuclease ABC 99.7 9.1E-17 2E-21 188.1 16.3 104 161-275 792-927 (943)
388 cd03279 ABC_sbcCD SbcCD and ot 99.7 4.8E-17 1E-21 161.7 9.9 167 56-264 5-211 (213)
389 TIGR00630 uvra excinuclease AB 99.7 1.1E-15 2.5E-20 178.7 16.5 103 160-273 789-923 (924)
390 KOG0060 Long-chain acyl-CoA tr 99.7 8E-16 1.7E-20 165.3 13.4 178 54-261 431-641 (659)
391 KOG0066 eIF2-interacting prote 99.6 3.1E-15 6.7E-20 155.1 10.9 180 54-273 584-789 (807)
392 cd03283 ABC_MutS-like MutS-lik 99.6 2.2E-15 4.8E-20 147.9 7.9 135 85-247 15-150 (199)
393 COG1245 Predicted ATPase, RNas 99.6 1.1E-14 2.3E-19 152.6 12.9 168 55-260 341-530 (591)
394 KOG0927 Predicted transporter 99.6 9.7E-15 2.1E-19 155.9 11.3 197 55-273 74-307 (614)
395 TIGR01247 drrB daunorubicin re 99.5 1.9E-12 4.2E-17 130.6 24.8 226 352-616 1-234 (236)
396 cd03276 ABC_SMC6_euk Eukaryoti 99.5 2.8E-14 6.1E-19 140.1 10.0 153 87-263 12-192 (198)
397 cd03275 ABC_SMC1_euk Eukaryoti 99.5 6.6E-15 1.4E-19 149.7 4.3 155 95-261 21-233 (247)
398 COG2401 ABC-type ATPase fused 99.5 9.8E-14 2.1E-18 143.7 10.8 189 57-265 358-588 (593)
399 KOG0062 ATPase component of AB 99.5 2.1E-13 4.7E-18 145.0 12.7 186 52-273 358-567 (582)
400 cd00820 PEPCK_HprK Phosphoenol 99.5 4.6E-14 1E-18 123.1 6.4 75 84-170 2-78 (107)
401 KOG0064 Peroxisomal long-chain 99.5 1.4E-13 3E-18 146.3 10.5 167 56-259 481-681 (728)
402 cd03280 ABC_MutS2 MutS2 homolo 99.5 7.5E-13 1.6E-17 130.3 13.7 145 87-268 17-172 (200)
403 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 3.4E-12 7.4E-17 126.2 17.4 151 434-623 58-208 (208)
404 TIGR01291 nodJ ABC-2 type tran 99.4 6.5E-11 1.4E-15 120.8 26.8 236 346-621 7-250 (253)
405 COG0178 UvrA Excinuclease ATPa 99.4 8.2E-13 1.8E-17 147.1 13.0 105 160-275 783-919 (935)
406 TIGR00025 Mtu_efflux ABC trans 99.4 6.9E-11 1.5E-15 119.0 25.1 222 358-619 2-229 (232)
407 PRK07721 fliI flagellum-specif 99.4 1.9E-12 4E-17 140.7 13.2 169 84-271 146-339 (438)
408 TIGR03861 phenyl_ABC_PedC alco 99.4 2.1E-10 4.5E-15 117.1 27.5 235 343-620 1-250 (253)
409 PRK00635 excinuclease ABC subu 99.4 1.5E-12 3.2E-17 159.3 13.5 105 160-275 1660-1796(1809)
410 cd03277 ABC_SMC5_euk Eukaryoti 99.4 8E-13 1.7E-17 131.2 7.3 153 87-263 14-211 (213)
411 COG1245 Predicted ATPase, RNas 99.3 1E-12 2.2E-17 137.9 5.7 150 94-260 97-287 (591)
412 cd03243 ABC_MutS_homologs The 99.3 1.9E-12 4.2E-17 127.5 7.0 155 89-272 21-176 (202)
413 KOG0062 ATPase component of AB 99.3 3.8E-12 8.2E-17 135.6 9.4 180 55-274 79-284 (582)
414 cd03284 ABC_MutS1 MutS1 homolo 99.3 2.7E-12 5.8E-17 127.7 7.4 161 85-273 19-179 (216)
415 cd03285 ABC_MSH2_euk MutS2 hom 99.3 1.4E-12 3E-17 130.3 5.0 151 84-269 17-175 (222)
416 TIGR02858 spore_III_AA stage I 99.2 6.3E-12 1.4E-16 128.6 6.1 141 98-273 112-267 (270)
417 PRK15066 inner membrane transp 99.2 1.5E-08 3.3E-13 103.6 29.0 242 342-623 6-254 (257)
418 cd03239 ABC_SMC_head The struc 99.2 6.3E-11 1.4E-15 114.3 7.4 49 210-261 124-172 (178)
419 cd03282 ABC_MSH4_euk MutS4 hom 99.1 1.2E-10 2.7E-15 114.7 8.3 131 84-246 16-152 (204)
420 cd03227 ABC_Class2 ABC-type Cl 99.1 2E-10 4.4E-15 109.1 8.5 48 211-261 108-155 (162)
421 cd03241 ABC_RecN RecN ATPase i 99.1 2.4E-10 5.1E-15 118.2 8.0 49 211-263 201-249 (276)
422 KOG0066 eIF2-interacting prote 99.0 3.3E-10 7.1E-15 118.2 4.4 191 55-271 263-495 (807)
423 KOG0063 RNAse L inhibitor, ABC 99.0 3.4E-09 7.3E-14 110.9 10.7 156 84-260 349-531 (592)
424 COG0842 ABC-type multidrug tra 98.9 1.1E-07 2.5E-12 97.2 21.7 167 422-624 118-285 (286)
425 TIGR03238 dnd_assoc_3 dnd syst 98.9 4.7E-10 1E-14 120.9 3.6 64 84-155 19-87 (504)
426 PRK00349 uvrA excinuclease ABC 98.8 6.8E-09 1.5E-13 122.5 9.1 113 158-274 434-584 (943)
427 TIGR00630 uvra excinuclease AB 98.8 9.2E-09 2E-13 121.2 9.9 112 159-274 433-582 (924)
428 cd03287 ABC_MSH3_euk MutS3 hom 98.8 4E-08 8.6E-13 98.0 11.8 143 84-254 18-161 (222)
429 cd03242 ABC_RecF RecF is a rec 98.8 3.8E-08 8.2E-13 101.5 11.6 48 211-264 219-269 (270)
430 cd03281 ABC_MSH5_euk MutS5 hom 98.7 6.9E-08 1.5E-12 96.0 11.7 132 86-246 18-155 (213)
431 TIGR01026 fliI_yscN ATPase Fli 98.7 4.2E-08 9.1E-13 107.0 10.0 168 83-272 150-345 (440)
432 PRK07196 fliI flagellum-specif 98.7 1.4E-08 3E-13 109.9 6.0 176 83-267 142-333 (434)
433 TIGR02788 VirB11 P-type DNA tr 98.7 8.6E-08 1.9E-12 100.7 11.3 144 90-275 137-281 (308)
434 TIGR01248 drrC daunorubicin re 98.7 6.6E-07 1.4E-11 84.1 15.6 129 419-550 16-146 (152)
435 cd01130 VirB11-like_ATPase Typ 98.6 1.2E-07 2.7E-12 92.1 8.0 82 86-171 14-97 (186)
436 cd03286 ABC_MSH6_euk MutS6 hom 98.6 9E-08 1.9E-12 95.2 6.7 137 84-247 17-155 (218)
437 PRK06002 fliI flagellum-specif 98.6 1.8E-07 3.8E-12 101.5 9.4 183 54-267 137-343 (450)
438 TIGR01069 mutS2 MutS2 family p 98.6 1.4E-07 3E-12 110.0 9.3 128 90-246 314-446 (771)
439 smart00534 MUTSac ATPase domai 98.5 1.3E-07 2.8E-12 91.9 6.2 53 211-265 87-140 (185)
440 PF02463 SMC_N: RecF/RecN/SMC 98.5 9.9E-09 2.1E-13 102.4 -1.8 70 184-259 120-211 (220)
441 cd01128 rho_factor Transcripti 98.5 1.1E-07 2.3E-12 96.5 4.6 165 92-265 11-212 (249)
442 PRK09825 idnK D-gluconate kina 98.5 1.2E-07 2.7E-12 91.3 3.9 68 96-170 2-70 (176)
443 TIGR03881 KaiC_arch_4 KaiC dom 98.4 9.8E-08 2.1E-12 95.8 3.1 163 86-260 8-188 (229)
444 PRK00064 recF recombination pr 98.4 3.1E-06 6.7E-11 90.9 12.4 49 211-264 309-359 (361)
445 TIGR03518 ABC_perm_GldF glidin 98.3 0.00014 3.1E-09 73.6 23.5 219 347-621 2-240 (240)
446 COG0178 UvrA Excinuclease ATPa 98.3 1.4E-06 3E-11 98.3 9.5 114 159-275 427-577 (935)
447 PRK06315 type III secretion sy 98.3 5.9E-06 1.3E-10 89.9 12.8 173 83-270 151-345 (442)
448 PRK08533 flagellar accessory p 98.3 3E-07 6.5E-12 92.5 2.4 151 93-260 20-184 (230)
449 PF12679 ABC2_membrane_2: ABC- 98.3 0.00026 5.6E-09 72.7 24.3 164 423-621 89-275 (277)
450 KOG0063 RNAse L inhibitor, ABC 98.3 1.2E-06 2.6E-11 92.1 6.4 150 95-260 98-287 (592)
451 COG1682 TagG ABC-type polysacc 98.2 0.00092 2E-08 68.4 26.1 240 341-624 15-258 (263)
452 PRK06995 flhF flagellar biosyn 98.2 1E-06 2.2E-11 96.8 4.5 92 85-199 244-335 (484)
453 PRK01889 GTPase RsgA; Reviewed 98.2 2.9E-06 6.2E-11 90.9 7.4 136 87-231 185-323 (356)
454 PRK08149 ATP synthase SpaL; Va 98.2 2.1E-06 4.6E-11 93.0 6.3 73 83-156 138-216 (428)
455 COG3910 Predicted ATPase [Gene 98.2 1.1E-05 2.4E-10 76.6 9.7 50 211-263 155-205 (233)
456 PF13555 AAA_29: P-loop contai 98.2 2.5E-06 5.4E-11 66.9 4.5 37 87-123 12-49 (62)
457 PF06422 PDR_CDR: CDR ABC tran 98.1 4E-06 8.7E-11 73.2 5.9 49 576-624 27-76 (103)
458 TIGR00235 udk uridine kinase. 98.1 1.3E-06 2.9E-11 86.3 2.2 29 95-123 4-32 (207)
459 TIGR00767 rho transcription te 98.1 5.7E-06 1.2E-10 88.3 6.2 54 56-123 130-194 (415)
460 PRK09270 nucleoside triphospha 98.0 6.8E-06 1.5E-10 82.6 6.3 75 94-174 30-108 (229)
461 PRK10078 ribose 1,5-bisphospho 98.0 4.8E-06 1E-10 80.9 4.9 52 97-154 2-55 (186)
462 PRK10416 signal recognition pa 98.0 4.4E-06 9.6E-11 87.9 4.7 74 95-171 112-193 (318)
463 TIGR00554 panK_bact pantothena 98.0 5.5E-06 1.2E-10 85.8 5.1 77 96-174 61-138 (290)
464 PRK13830 conjugal transfer pro 98.0 0.00013 2.9E-09 86.4 16.7 58 211-270 661-728 (818)
465 PF12698 ABC2_membrane_3: ABC- 98.0 1.6E-06 3.5E-11 90.8 0.0 129 417-551 182-315 (344)
466 TIGR02546 III_secr_ATP type II 98.0 1.4E-05 3E-10 87.2 7.2 77 83-163 132-216 (422)
467 cd01131 PilT Pilus retraction 97.9 6.1E-05 1.3E-09 74.0 10.8 120 99-260 3-122 (198)
468 TIGR00416 sms DNA repair prote 97.9 1.3E-05 2.9E-10 88.3 6.9 151 86-263 82-247 (454)
469 cd01136 ATPase_flagellum-secre 97.9 1.3E-05 2.8E-10 84.2 6.2 49 84-136 57-105 (326)
470 TIGR02322 phosphon_PhnN phosph 97.9 2.7E-05 5.8E-10 75.0 7.9 27 97-123 1-27 (179)
471 PRK07594 type III secretion sy 97.9 9.9E-06 2.1E-10 88.0 5.3 64 56-137 129-192 (433)
472 PRK00409 recombination and DNA 97.9 5.4E-05 1.2E-09 88.9 11.8 54 211-267 416-470 (782)
473 PRK07960 fliI flagellum-specif 97.9 7.8E-06 1.7E-10 88.8 4.3 72 84-156 163-239 (455)
474 PRK15176 Vi polysaccharide exp 97.9 0.0077 1.7E-07 61.9 26.1 106 480-624 154-262 (264)
475 PLN02796 D-glycerate 3-kinase 97.9 4.2E-06 9E-11 87.9 1.4 54 85-138 80-141 (347)
476 TIGR02655 circ_KaiC circadian 97.8 2.4E-06 5.1E-11 95.4 -1.3 155 85-260 8-190 (484)
477 PTZ00132 GTP-binding nuclear p 97.8 4.8E-06 1E-10 82.7 0.7 25 99-123 11-36 (215)
478 PRK09099 type III secretion sy 97.8 2.4E-05 5.2E-10 85.3 6.0 51 83-137 150-200 (441)
479 PRK09862 putative ATP-dependen 97.8 2E-05 4.2E-10 87.5 5.3 53 83-138 196-248 (506)
480 TIGR02524 dot_icm_DotB Dot/Icm 97.8 0.0001 2.3E-09 78.8 10.5 127 95-259 132-259 (358)
481 PTZ00035 Rad51 protein; Provis 97.8 4.3E-05 9.3E-10 81.2 7.3 149 86-245 106-268 (337)
482 PRK11545 gntK gluconate kinase 97.8 7.8E-06 1.7E-10 77.7 1.3 61 103-170 1-62 (163)
483 PRK00300 gmk guanylate kinase; 97.8 1.9E-05 4.2E-10 77.7 4.0 28 95-122 3-30 (205)
484 PRK03846 adenylylsulfate kinas 97.8 1.6E-05 3.4E-10 78.1 3.2 56 95-154 22-77 (198)
485 PRK13695 putative NTPase; Prov 97.8 3E-05 6.5E-10 74.4 5.1 51 211-268 107-157 (174)
486 PRK05688 fliI flagellum-specif 97.8 2.5E-05 5.5E-10 85.1 4.9 54 83-137 155-208 (451)
487 PLN02318 phosphoribulokinase/u 97.7 2.4E-05 5.2E-10 87.0 4.6 63 98-169 66-128 (656)
488 cd01120 RecA-like_NTPases RecA 97.7 0.00011 2.4E-09 68.6 8.3 34 99-135 1-34 (165)
489 TIGR03497 FliI_clade2 flagella 97.7 5E-05 1.1E-09 82.5 6.2 51 83-137 124-174 (413)
490 TIGR03498 FliI_clade3 flagella 97.7 4.2E-05 9E-10 83.1 5.3 51 83-137 127-177 (418)
491 PRK06793 fliI flagellum-specif 97.7 8.1E-05 1.8E-09 80.9 7.3 50 84-137 144-193 (432)
492 cd01854 YjeQ_engC YjeQ/EngC. 97.7 6.5E-05 1.4E-09 78.2 6.3 79 88-170 153-240 (287)
493 PRK00098 GTPase RsgA; Reviewed 97.6 0.00011 2.3E-09 77.0 7.5 69 96-167 163-240 (298)
494 TIGR03496 FliI_clade1 flagella 97.6 8.5E-05 1.8E-09 80.7 6.8 167 84-267 125-316 (411)
495 TIGR01420 pilT_fam pilus retra 97.6 0.0003 6.5E-09 75.1 10.8 125 94-260 119-243 (343)
496 PRK08972 fliI flagellum-specif 97.6 5.4E-05 1.2E-09 82.1 4.9 41 83-124 149-189 (444)
497 cd02025 PanK Pantothenate kina 97.6 5.6E-05 1.2E-09 75.5 4.7 25 99-123 1-25 (220)
498 PRK05922 type III secretion sy 97.6 9.5E-05 2.1E-09 80.4 6.4 51 83-137 144-194 (434)
499 cd01124 KaiC KaiC is a circadi 97.6 0.00023 5.1E-09 68.6 8.1 49 211-260 104-163 (187)
500 cd01125 repA Hexameric Replica 97.6 0.00074 1.6E-08 68.3 12.1 35 212-246 126-160 (239)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-92 Score=798.30 Aligned_cols=552 Identities=38% Similarity=0.630 Sum_probs=485.1
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...++++|+++...++. ...+++|+|||++++|||++||+|||||||||||++|+|+........|+|.+
T Consensus 23 ~~~~~~~~~~~~~~~~~----------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilv 92 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKS----------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILL 92 (613)
T ss_pred cceeEEEEEEEEecCCC----------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEE
Confidence 34689999999875331 13578999999999999999999999999999999999998864334599999
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccCCcC--------
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAGSFV-------- 204 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~~-------- 204 (627)
||++ .+.+.+++.+|||.|||.++|.+||+|++.|.+.+|++. .++++++++|+++++++||.+++|+++
T Consensus 93 NG~~-~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgi 171 (613)
T KOG0061|consen 93 NGRP-RDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGL 171 (613)
T ss_pred CCcc-CchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcc
Confidence 9977 456788999999999999999999999999999999876 378899999999999999999998877
Q ss_pred -CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 205 -GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 205 -gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
|||||| ||||||+.++.++++.|+++|++ |+|||++.|||+.++++++|++++|.+|+++
T Consensus 172 SGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~v 250 (613)
T KOG0061|consen 172 SGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVV 250 (613)
T ss_pred ccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE
Confidence 589999 99999999999999999999987 9999999999999999999999999999999
Q ss_pred eeCCHHHHHHHHHhcCCCCCCCCChHHHHHHhcCCC--cccccCCCCCCcchhhhccCCccccc-----ccCC---Cccc
Q 006897 266 HYGSLELLEETINNLGYQIPTQLNAIEFAMEIMHPL--EDSYSNNNNFLPSVEDAEQFPDLRCE-----KVGG---VEHQ 335 (627)
Q Consensus 266 ~~G~~~~~~~~~~~~g~~~p~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~ 335 (627)
++|+++++.++|.+.|++||.+.||+||++++++.. .+......+........+. .+...+ .... ....
T Consensus 251 y~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 329 (613)
T KOG0061|consen 251 YSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQ-TDNLKKTLEALEKSLSTSKKVE 329 (613)
T ss_pred EecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccc-cchhhhhHHHHhhhcccccccc
Confidence 999999999999999999999999999999998743 1110000000000000000 000000 0000 0011
Q ss_pred ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHH-HHH
Q 006897 336 QHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTV-EAL 414 (627)
Q Consensus 336 ~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~~-~~i 414 (627)
....++||.|+.+|++|.+++.+|||.+...|+++.+++|+++|++||+++++..++++|.|++||.+.++.+.+. .++
T Consensus 330 ~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i 409 (613)
T KOG0061|consen 330 IGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAV 409 (613)
T ss_pred cccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1126899999999999999999999999999999999999999999999999999999999999999998866554 579
Q ss_pred hhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006897 415 PIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLF 494 (627)
Q Consensus 415 ~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~ 494 (627)
+.|++||++|.||+.+|+|+.++||+|++++++|+.++.+++|.+|+|||+|++++..+|++|++++++..++++++|++
T Consensus 410 ~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~ 489 (613)
T KOG0061|consen 410 PVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLF 489 (613)
T ss_pred HHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCC
Q 006897 495 LSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDH 574 (627)
Q Consensus 495 i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~ 574 (627)
++++.||...|+++.++++++|++|+||+++.++||.||+|++|+|+++|++|++++|||.+....|.....
T Consensus 490 i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~-------- 561 (613)
T KOG0061|consen 490 ISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN-------- 561 (613)
T ss_pred HHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC--------
Confidence 999999999999999999999999999999999999999999999999999999999999985556764321
Q ss_pred CcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 006897 575 FSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASKTTT 627 (627)
Q Consensus 575 ~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~~ 627 (627)
..|..+|.++++.++++..+.|.|+.++++++++|++++|++|+++.+++++
T Consensus 562 -~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~~ 613 (613)
T KOG0061|consen 562 -LCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKRR 613 (613)
T ss_pred -CcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 4688999999999999999999999999999999999999999999988763
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=5.6e-92 Score=800.49 Aligned_cols=535 Identities=27% Similarity=0.469 Sum_probs=464.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCC
Q 006897 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 82 ~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
+++.+|+|+|+++++||++||+|||||||||||++|+|+.++.....|+|.+||+++ +...+++.+|||+|++.+++.+
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~-~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI-DAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC-CHHHHhhhceeeccccccCccC
Confidence 457799999999999999999999999999999999999877532359999999985 3456788999999999999999
Q ss_pred CHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccCC----------cCCccccC------------------CC
Q 006897 162 TVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAGS----------FVGDEENR------------------GI 212 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~----------~~gGe~qr------------------Pt 212 (627)
||+|||.|++.++.+. .++++.+++++++++.+||.+++|+ ++|||||| ||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999999998776543 3566778889999999999876554 55899998 99
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHHHhcCCCCCCCCChHH
Q 006897 213 SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIE 292 (627)
Q Consensus 213 sgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~~~~g~~~p~~~~~~d 292 (627)
+|||+.++.++++.|+++++ .|+|||+++||++.++.++||++++|++|++++.|+++++.++|.+.|++||.+.||+|
T Consensus 195 sgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad 273 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPAD 273 (617)
T ss_pred cchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHH
Confidence 99999999999999999986 49999999999986789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcccccCCCCCCcch-hhh---ccCCc----ccc-c-------ccCCCcccccccccHHHHHHHHHHHHHHH
Q 006897 293 FAMEIMHPLEDSYSNNNNFLPSV-EDA---EQFPD----LRC-E-------KVGGVEHQQHAFFLILYEIMVLCSRFWKI 356 (627)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~----~~~-~-------~~~~~~~~~~~~~~~~~q~~~l~~R~~~~ 356 (627)
++++++................. +.. +...+ ... + ..........+..+++.|+.+|++|+++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~ 353 (617)
T TIGR00955 274 FYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLS 353 (617)
T ss_pred HHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHH
Confidence 99999764332111100000000 000 00000 000 0 00000112345688999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHH-HHHHhhHHHhhHHHHHHhcCCCCCh
Q 006897 357 IYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSST-VEALPIYLQERRVLMKEASREAYRI 435 (627)
Q Consensus 357 ~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~-~~~i~~~~~er~v~~rE~~~~~Y~~ 435 (627)
.+|||.++..|+++.+++|+++|++||+++.++.++++|.|++|+++.++.+.+ ...++.|++||++|+||+.+|+|++
T Consensus 354 ~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~ 433 (617)
T TIGR00955 354 VLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV 433 (617)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCH
Confidence 999999999999999999999999999999999999999999999988777764 5778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006897 436 SSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVLGA 515 (627)
Q Consensus 436 ~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~ 515 (627)
++|++|++++++|+.++.+++|++|+|||+|+++++.+|+.|+++++++.++++++|+++++++||..+|+.++++++++
T Consensus 434 ~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~ 513 (617)
T TIGR00955 434 SAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIP 513 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCc-cccccccCCCCCCCCCcccccchHHHHhhcCCCCC
Q 006897 516 FFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARG-ECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKD 594 (627)
Q Consensus 516 ~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~-~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~~~~ 594 (627)
+++|+||+++.++||+||+|++|+||++|++++++.|||.+..+ +|.+.+. ...|+.+|+++|+.+|++.+
T Consensus 514 ~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~--------~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 514 FLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANT--------TGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCc--------CCCCCcChHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999998765 6854211 14588899999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 006897 595 TRWVNVGVMLAFFLFYRVLCWIILSRRASKTT 626 (627)
Q Consensus 595 ~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 626 (627)
+.|.|++++++++++|++++|++|+++.+++|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999988765
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=6.5e-91 Score=792.02 Aligned_cols=550 Identities=27% Similarity=0.429 Sum_probs=449.4
Q ss_pred cceEEEEeEEEEEccCccc-----cccc---c------cCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 54 TCKVTVRNLSYAIQPNTSI-----LSHL---L------HEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~-----~~~~---~------~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
+..+++.|++|+....+.. ...+ . .+.-+++++|+|+|+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 4578899999887533200 0000 0 001124679999999999999999999999999999999999
Q ss_pred CCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCcc
Q 006897 120 RVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK-GMSHKEKEDRVESLMDELGLTH 198 (627)
Q Consensus 120 l~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~ 198 (627)
+.+|+. .+|+|.+||+++. ...++++|||+|++.+++.+||+||+.+++.++.+ ..++++.+++++++++.+||++
T Consensus 117 ~~~~~~-~sG~I~inG~~~~--~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 117 RIQGNN-FTGTILANNRKPT--KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred CCCCCc-eeEEEEECCEECc--hhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 998753 2499999998853 23456799999999999999999999998766543 2345566788999999999987
Q ss_pred ccCC---------cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHH
Q 006897 199 VAGS---------FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ 251 (627)
Q Consensus 199 ~~~~---------~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~ 251 (627)
++++ ++|||||| ||+|||+.++.++++.|+++++ +|+|||+++||++.++.+
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~ 272 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQ 272 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHH
Confidence 6643 56999999 9999999999999999999986 589999999999855889
Q ss_pred HhhhheeecCCeEEeeCCHHHHHHHHHhcCCCCCCCCChHHHHHHhcCCCcccc--cC-CCCCC-cch-hhhc-------
Q 006897 252 YISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSY--SN-NNNFL-PSV-EDAE------- 319 (627)
Q Consensus 252 ~~D~i~vL~~G~iv~~G~~~~~~~~~~~~g~~~p~~~~~~d~~~~~~~~~~~~~--~~-~~~~~-~~~-~~~~------- 319 (627)
+||++++|++|++++.|+++++.++|.+.|++||.+.||+||++++++...+.. .. ..... ... ..++
T Consensus 273 ~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (659)
T PLN03211 273 MFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKV 352 (659)
T ss_pred hhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHH
Confidence 999999999999999999999999999999999999999999999987532110 00 00000 000 0000
Q ss_pred --c--CCcc-c-ccc------cCCCc-ccccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCC
Q 006897 320 --Q--FPDL-R-CEK------VGGVE-HQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVR 386 (627)
Q Consensus 320 --~--~~~~-~-~~~------~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~ 386 (627)
. .... . .+. ..... ....+.++|++|+.+|++|++++ +||+.+.+.|+++++++|+++|++||+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~ 431 (659)
T PLN03211 353 KAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD 431 (659)
T ss_pred HHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 0000 0 000 00000 11123468999999999999998 89999999999999999999999999985
Q ss_pred CChhhHHHHHHHHHHHHHHHH-HHHHHHHhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 006897 387 KDEAGVAERLGLFAFSLSFLL-SSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIV 465 (627)
Q Consensus 387 ~~~~~~~~~~g~~ff~~~~~~-~~~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~ 465 (627)
+.++++|.|++||+++++. +.++..++.|++||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+
T Consensus 432 --~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~ 509 (659)
T PLN03211 432 --FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMA 509 (659)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcC
Confidence 6789999999999988755 4567899999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHH
Q 006897 466 GLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYP 545 (627)
Q Consensus 466 gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~ 545 (627)
||++++.+|+.|+++++++.++++++|+++++++||..+|+.+++++++++++|+||+++ +||+||+|++|+||++|+
T Consensus 510 Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~ 587 (659)
T PLN03211 510 GLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYS 587 (659)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 799999999999999999
Q ss_pred HHHHHHHHhCCCC-----ccccccccCCCCCCCCCcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 006897 546 LDSLLTNEYWSAR-----GECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSR 620 (627)
Q Consensus 546 ~~~l~~nef~~~~-----~~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 620 (627)
+|+++.|||.+.+ .+|..+.. .....|...++.++. ..+.|.|+++|++++++|++++|++|++
T Consensus 588 ~eal~~nef~~~~~~~~~~~C~~~~~------~~~~~c~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~l~~~~L~~ 656 (659)
T PLN03211 588 YRLLINVQYGEGKRISSLLGCSLPHG------SDRASCKFVEEDVAG-----QISPATSVSVLIFMFVGYRLLAYLALRR 656 (659)
T ss_pred HHHHHHHhcCCccccccccCCCCccc------CCCCCCccchhhhhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999997643 25743211 111347655554443 4568999999999999999999999987
Q ss_pred hcc
Q 006897 621 RAS 623 (627)
Q Consensus 621 ~~~ 623 (627)
+++
T Consensus 657 ~~~ 659 (659)
T PLN03211 657 IKH 659 (659)
T ss_pred ccC
Confidence 653
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.7e-88 Score=820.48 Aligned_cols=542 Identities=22% Similarity=0.359 Sum_probs=459.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccceEEECCccCCC-hhhhcccEEEEccCCCCC
Q 006897 81 KVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ-DFDPRSITVNCHQIKK-PAQLRKICGFVAQEDNLL 158 (627)
Q Consensus 81 ~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~-~~~~G~i~i~g~~~~~-~~~~r~~ig~v~Q~~~l~ 158 (627)
..++++|+|+|+++++||+++|+||||||||||||+|+|+.++. ...+|+|.+||+++.+ ....|+.++||+|++.++
T Consensus 71 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 71 TKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred CCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccC
Confidence 34567999999999999999999999999999999999997421 1134999999988532 234567799999999999
Q ss_pred CCCCHHHHHHHHHHhcCC-----CCCHHHHHHH-HHHHHHHcCCccccCC---------cCCccccC-------------
Q 006897 159 PLLTVKETLMFSANFRLK-----GMSHKEKEDR-VESLMDELGLTHVAGS---------FVGDEENR------------- 210 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~-v~~~l~~lgL~~~~~~---------~~gGe~qr------------- 210 (627)
+.+||+|||.|+++++.+ +.++++..++ ++++++.+||++++++ ++||||||
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 999999999998876542 1234444444 5678999999987765 45999999
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHHHhcCCCCC
Q 006897 211 -----GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIP 285 (627)
Q Consensus 211 -----PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~~~~g~~~p 285 (627)
||+|||+.++.++++.|++++++.|+|||+++||++.++.++||++++|++|+++++|+++++.++|++.|+.||
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p 310 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCC
Confidence 999999999999999999998766899999999986679999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhcCCCcccccCC-----CCCCcchhh-hccCC-------cc----------------c---c-cccCCC
Q 006897 286 TQLNAIEFAMEIMHPLEDSYSNN-----NNFLPSVED-AEQFP-------DL----------------R---C-EKVGGV 332 (627)
Q Consensus 286 ~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~-------~~----------------~---~-~~~~~~ 332 (627)
++.|++||++++.+...+..... .....+..+ +...+ +. . . ++....
T Consensus 311 ~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1394)
T TIGR00956 311 DRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRT 390 (1394)
T ss_pred CCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccc
Confidence 99999999999976543221110 000000000 00000 00 0 0 000001
Q ss_pred cccccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 006897 333 EHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVE 412 (627)
Q Consensus 333 ~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~~~ 412 (627)
.....+..++++|+++|++|++++++|||.+++.|+++++++|+++|++||+++++++++++|.|++||++.+.+++++.
T Consensus 391 ~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~ 470 (1394)
T TIGR00956 391 RPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLL 470 (1394)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 11234667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 006897 413 ALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLV 492 (627)
Q Consensus 413 ~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~ 492 (627)
.++.++.||++|+||+.+++|++++|++|++++++|+.++.+++|++|+|||+||++++.+||.|+++++++.+++++++
T Consensus 471 ~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~ 550 (1394)
T TIGR00956 471 EIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLF 550 (1394)
T ss_pred HHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCcccccc-ccCCCCC
Q 006897 493 LFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSW-QKYNNVD 571 (627)
Q Consensus 493 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~-~~~~~~~ 571 (627)
+++++++||..+|+.+++++++++++|+||+++.++||+||+|++|+||++|++||++.|||++..++|... +.+++.+
T Consensus 551 ~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~ 630 (1394)
T TIGR00956 551 RSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYD 630 (1394)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999530 1111111
Q ss_pred ------------CCCCcccccchHHHHh-hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006897 572 ------------GDHFSKCLLTGNDVLK-SRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRA 622 (627)
Q Consensus 572 ------------~~~~~~c~~~G~~~L~-~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 622 (627)
|...+.|.++|+++|+ .+|++.++.|+|++|+++|+++|+++++++|.+.+
T Consensus 631 ~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 631 NLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred CCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111234679999998 58999999999999999999999999999999876
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.4e-87 Score=811.37 Aligned_cols=558 Identities=22% Similarity=0.369 Sum_probs=467.6
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+++++||+++|+.+ ++++.+|+|||+++++||++||+||||||||||||+|+|+.++...++|+|.+
T Consensus 757 ~~~l~~~nl~~~~~~~-----------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i 825 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIK-----------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLV 825 (1394)
T ss_pred CceEEEEeeEEEecCC-----------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEE
Confidence 3468999999999422 13467999999999999999999999999999999999998743234599999
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccCC--------cC
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAGS--------FV 204 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~--------~~ 204 (627)
||+++. ..+|+.+|||+|++.+++.+||+|||.|++.++.+. .++++.+++++++++.+||++++|+ ++
T Consensus 826 ~G~~~~--~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LS 903 (1394)
T TIGR00956 826 NGRPLD--SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLN 903 (1394)
T ss_pred CCEECC--hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCC
Confidence 999853 357888999999998899999999999988776432 3556677889999999999887764 55
Q ss_pred CccccC-------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC-eE
Q 006897 205 GDEENR-------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG-SV 264 (627)
Q Consensus 205 gGe~qr-------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G-~i 264 (627)
|||||| ||+|||+.++..+++.|+++++ .|+|||+++||++.++.+.||++++|++| ++
T Consensus 904 gGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i 982 (1394)
T TIGR00956 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQT 982 (1394)
T ss_pred HHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE
Confidence 899998 9999999999999999999986 58999999999996567889999999997 99
Q ss_pred EeeCCH----HHHHHHHHhcCC-CCCCCCChHHHHHHhcCCCcccccCCC-----CCCcchhhh----ccCCcc-c-ccc
Q 006897 265 VHYGSL----ELLEETINNLGY-QIPTQLNAIEFAMEIMHPLEDSYSNNN-----NFLPSVEDA----EQFPDL-R-CEK 328 (627)
Q Consensus 265 v~~G~~----~~~~~~~~~~g~-~~p~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~-~-~~~ 328 (627)
++.|++ +++.++|.+.|+ +||.+.|||||++|++........... ....+..+. +..... . .+.
T Consensus 983 v~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 1062 (1394)
T TIGR00956 983 VYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAED 1062 (1394)
T ss_pred EEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCcc
Confidence 999987 568899999996 999999999999999764322110000 000000000 000000 0 000
Q ss_pred cCCCcccccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHH
Q 006897 329 VGGVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLS 408 (627)
Q Consensus 329 ~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~ 408 (627)
........++++++++|+++|++|+++++||||.++++|+++++++|+++|++||++++++.++++|+|++|+.+.+..+
T Consensus 1063 ~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~ 1142 (1394)
T TIGR00956 1063 DNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNP 1142 (1394)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00001123567899999999999999999999999999999999999999999999999999999999999988887766
Q ss_pred HHHHHHhhHHHhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHH-------HHHHHHH
Q 006897 409 STVEALPIYLQERRVL-MKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEA-------FVFFIFV 480 (627)
Q Consensus 409 ~~~~~i~~~~~er~v~-~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~-------f~~f~~~ 480 (627)
...+.+|.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.. |++|+++
T Consensus 1143 ~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~ 1222 (1394)
T TIGR00956 1143 LIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLL 1222 (1394)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHH
Confidence 6778889999999886 9999999999999999999999999999999999999999999988766 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCcc
Q 006897 481 VWLIVLMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGE 560 (627)
Q Consensus 481 ~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~ 560 (627)
++++.++++++|+++++++||..+|+.+++++++++++|+||++++++||.||+|++|+||++|++++++.|||.+...+
T Consensus 1223 ~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~ 1302 (1394)
T TIGR00956 1223 STMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVT 1302 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cccccc----C-CCC------------------C-CC--CCcccc-cchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHH
Q 006897 561 CFSWQK----Y-NNV------------------D-GD--HFSKCL-LTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVL 613 (627)
Q Consensus 561 C~~~~~----~-~~~------------------~-~~--~~~~c~-~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l 613 (627)
|.+.+. + ++. + .+ ....|+ .+|+++|+.+|++.+++|+|++|+++|++++ ++
T Consensus 1303 C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~ 1381 (1394)
T TIGR00956 1303 CKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-II 1381 (1394)
T ss_pred cCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HH
Confidence 865210 0 000 0 11 123355 6999999999999999999999999999998 88
Q ss_pred HHHHHhhhccccC
Q 006897 614 CWIILSRRASKTT 626 (627)
Q Consensus 614 ~~~~L~~~~~~~~ 626 (627)
+++.|+++.|.+|
T Consensus 1382 ~~~~l~~~~r~~k 1394 (1394)
T TIGR00956 1382 ATVFFYWLARVPK 1394 (1394)
T ss_pred HHHhhheEEEcCC
Confidence 8899998876654
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=8.4e-86 Score=799.30 Aligned_cols=556 Identities=21% Similarity=0.354 Sum_probs=461.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++||+|.++.+.... . .....+.+++|+|||+++++||++||+||||||||||||+|+|+.++.. .+|+|.+|
T Consensus 866 ~~~~~~~v~y~v~~~~~~~-~-~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~-~~G~I~in 942 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMK-E-QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIRIS 942 (1470)
T ss_pred ceEEEEEEEEEEccCcccc-c-cccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCc-ccceEEEC
Confidence 4699999999985321100 0 0001134579999999999999999999999999999999999976432 34999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccCC---------cC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAGS---------FV 204 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~---------~~ 204 (627)
|++. +...+++.+|||+|++.+++.+||+|||.|++.++.+. .++++..++++++++.+||++++++ ++
T Consensus 943 G~~~-~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 943 GFPK-KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred CccC-ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 9874 33456778999999999999999999999988766432 3455667789999999999877655 45
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC-CeEE
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR-GSVV 265 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~-G~iv 265 (627)
|||||| ||+|||+.++..+++.|++++++ |+|||+++||++.++.+.||++++|++ |+++
T Consensus 1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140 1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100 (1470)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE
Confidence 899998 99999999999999999999864 899999999998667899999999996 8999
Q ss_pred eeCCH----HHHHHHHHhc-CC-CCCCCCChHHHHHHhcCCCcccccCCCCCCcch------hhhcc-CCcccccc--cC
Q 006897 266 HYGSL----ELLEETINNL-GY-QIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSV------EDAEQ-FPDLRCEK--VG 330 (627)
Q Consensus 266 ~~G~~----~~~~~~~~~~-g~-~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~--~~ 330 (627)
+.|++ +++.+||++. |+ .||...|||||+++++.......... ...... .+... ...+.... ..
T Consensus 1101 ~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~-d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 1179 (1470)
T PLN03140 1101 YSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGI-DFAEHYKSSSLYQRNKALVKELSTPPPGAS 1179 (1470)
T ss_pred EECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccc-hHHHHHhccHHHHHHHHHHHHhccCCCCcc
Confidence 99996 5789999997 66 49999999999999875422111000 000000 00000 00000000 00
Q ss_pred CCcccccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCCh---hhHHHHHHHHHHHHHHHH
Q 006897 331 GVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDE---AGVAERLGLFAFSLSFLL 407 (627)
Q Consensus 331 ~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~---~~~~~~~g~~ff~~~~~~ 407 (627)
......++.+++++|+.+|++|+++.+||||.++++|+++.+++|+++|++||++++++ .+++++.|++|+++.++.
T Consensus 1180 ~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 1259 (1470)
T PLN03140 1180 DLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVG 1259 (1470)
T ss_pred ccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 01112456789999999999999999999999999999999999999999999999865 567889999999888876
Q ss_pred HHH-HHHHhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHH
Q 006897 408 SST-VEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVL 486 (627)
Q Consensus 408 ~~~-~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~ 486 (627)
+.. .+.+|.|..||.+|+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+||++++..||+|+++++++.+
T Consensus 1260 ~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~ 1339 (1470)
T PLN03140 1260 INNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFL 1339 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Confidence 644 4667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCcccccccc
Q 006897 487 MASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQK 566 (627)
Q Consensus 487 ~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~ 566 (627)
+++++|+++++++||..+|+.+++++++++++|+||++|+++||+||+|++|+||++|++++++.|||.+.+.+|..+..
T Consensus 1340 ~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~ 1419 (1470)
T PLN03140 1340 YFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGG 1419 (1470)
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998766632210
Q ss_pred CCCCCCCCCcccccchHHH-HhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 006897 567 YNNVDGDHFSKCLLTGNDV-LKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASKTT 626 (627)
Q Consensus 567 ~~~~~~~~~~~c~~~G~~~-L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 626 (627)
....+|+++ ++++|+++++.|+|++|+++|+++|++++++++++.++++|
T Consensus 1420 ----------~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1420 ----------APDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred ----------CCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 011356777 57899999999999999999999999999999999988775
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=7.7e-86 Score=799.65 Aligned_cols=530 Identities=22% Similarity=0.364 Sum_probs=447.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCC
Q 006897 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 82 ~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
.++.+|+|+|+.+++||+++|+||||||||||||+|+|+++|+...+|+|.+||+++.+ ...++.++||+|++.+++.+
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~-~~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNE-FVPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechh-hcccceeEEecccccCCCcC
Confidence 45779999999999999999999999999999999999998752235999999988532 22367899999999999999
Q ss_pred CHHHHHHHHHHhcCCC--------CCHHHH------------------------HHHHHHHHHHcCCccccCC-------
Q 006897 162 TVKETLMFSANFRLKG--------MSHKEK------------------------EDRVESLMDELGLTHVAGS------- 202 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~--------~~~~~~------------------------~~~v~~~l~~lgL~~~~~~------- 202 (627)
||+|||.|+++++..+ .+++++ +..++++++.+||++++++
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999988764211 111111 1235789999999987653
Q ss_pred --cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 203 --FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 203 --~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
++|||||| ||+|||+.++.++++.|++++++.|+|+|+++||+..++.++||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 45999999 9999999999999999999987678999999999876799999999999999
Q ss_pred eEEeeCCHHHHHHHHHhcCCCCCCCCChHHHHHHhcCCCccccc----CCC---CCCcchhh-hccCC---cc-------
Q 006897 263 SVVHYGSLELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYS----NNN---NFLPSVED-AEQFP---DL------- 324 (627)
Q Consensus 263 ~iv~~G~~~~~~~~~~~~g~~~p~~~~~~d~~~~~~~~~~~~~~----~~~---~~~~~~~~-~~~~~---~~------- 324 (627)
+++++|+++++.++|++.|+.||++.|++||++++.+..++... ..+ ....+..+ +.... .+
T Consensus 415 ~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 494 (1470)
T PLN03140 415 QIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVP 494 (1470)
T ss_pred eEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999876443211 000 00001110 00000 00
Q ss_pred -cccc-cCCCcccccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCCh---hhHHHHHHHH
Q 006897 325 -RCEK-VGGVEHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDE---AGVAERLGLF 399 (627)
Q Consensus 325 -~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~---~~~~~~~g~~ 399 (627)
..+. .........+..+++.|+..+++|+++.++||+..++.|+++.+++|+++|++||+++.++ .+.+.+.|++
T Consensus 495 ~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~l 574 (1470)
T PLN03140 495 FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGAL 574 (1470)
T ss_pred hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHH
Confidence 0000 0001122346788999999999999999999999999999999999999999999997543 3466788999
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHH
Q 006897 400 AFSLSFLLSSTVEALPIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIF 479 (627)
Q Consensus 400 ff~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~ 479 (627)
||++++.++.++.+++.++.||++|+||+..++|++++|++|++++++|+.++.+++|++|+|||+||++++.+||.|++
T Consensus 575 ff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l 654 (1470)
T PLN03140 575 LFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLL 654 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHH
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCc
Q 006897 480 VVWLIVLMASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARG 559 (627)
Q Consensus 480 ~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~ 559 (627)
+++++.++++++++++++++|+..+|+++++++++++++|+||+++.++||+||+|++|+||++||++|++.|||.+..+
T Consensus 655 ~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~ 734 (1470)
T PLN03140 655 LVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRW 734 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred cccccccCCCCCCCCCcccccchHHHHhhcCCCCCC--chHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006897 560 ECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDT--RWVNVGVMLAFFLFYRVLCWIILSRRA 622 (627)
Q Consensus 560 ~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~~~~~--~w~~~~il~~~~~~~~~l~~~~L~~~~ 622 (627)
.|..+. ..+...|+++|+.+|+..++ .|+|+++|++|+++|+++++++|++.+
T Consensus 735 ~~~~~~----------~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 735 MNKMAS----------DNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred cCcccC----------CCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 321100 12457899999999998665 588899999999999999999999876
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-79 Score=701.33 Aligned_cols=495 Identities=25% Similarity=0.435 Sum_probs=425.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
...++|+.+..+. +++.+++|+|||.-++||.++||||+|||||||||++|+|+..... .+|+|.++|
T Consensus 787 V~~w~dl~~~~~~-----------qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~-I~Gdi~i~G 854 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPI-----------QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGY-IEGDILISG 854 (1391)
T ss_pred eEEEEeCCccccc-----------cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccce-EEeEEEECC
Confidence 4566666665532 2366789999999999999999999999999999999999976543 459999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccCCcCC--------c
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAGSFVG--------D 206 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~~g--------G 206 (627)
.+ .+.+.++|.+|||.|+|.+.+.+||+|.|.|+|.+|++. .+.+++.+.|+++++.++|+++++.++| +
T Consensus 855 ~p-~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~e 933 (1391)
T KOG0065|consen 855 FP-KDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTE 933 (1391)
T ss_pred ee-CchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHH
Confidence 98 444789999999999999999999999999999999865 4777788999999999999999998884 3
Q ss_pred cccC-------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC-CeEEe
Q 006897 207 EENR-------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR-GSVVH 266 (627)
Q Consensus 207 e~qr-------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~-G~iv~ 266 (627)
||+| ||||||+.++..+++.+|++++ .|+||+|++|||+.++++.+|++++|++ |+.+|
T Consensus 934 QRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY 1012 (1391)
T KOG0065|consen 934 QRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVY 1012 (1391)
T ss_pred HhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEE
Confidence 6666 9999999999999999999997 6999999999999999999999999986 79999
Q ss_pred eCCHH----HHHHHHHhcC-CCCCCCCChHHHHHHhcCCCcccccCCC-----CCCcchhhhcc-CCcccc---cccCCC
Q 006897 267 YGSLE----LLEETINNLG-YQIPTQLNAIEFAMEIMHPLEDSYSNNN-----NFLPSVEDAEQ-FPDLRC---EKVGGV 332 (627)
Q Consensus 267 ~G~~~----~~~~~~~~~g-~~~p~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~---~~~~~~ 332 (627)
.|+.. .+.+||++.+ .+||...|||||++|++........+.. ....+..+.++ .+++.. ......
T Consensus 1013 ~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~ 1092 (1391)
T KOG0065|consen 1013 FGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDL 1092 (1391)
T ss_pred ecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCccc
Confidence 99874 4678999875 8999999999999999865433211100 00000000000 000000 011112
Q ss_pred cccccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 006897 333 EHQQHAFFLILYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTVE 412 (627)
Q Consensus 333 ~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~~~ 412 (627)
....++++++|.|++.+++|++..+||+|.++++|++..++.||++|+.||+++.+..+++|.+|++|.++++......+
T Consensus 1093 ~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~ 1172 (1391)
T KOG0065|consen 1093 EFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQ 1172 (1391)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 24556889999999999999999999999999999999999999999999999999999999999999998877666555
Q ss_pred HH-hhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHH
Q 006897 413 AL-PIYLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSL 491 (627)
Q Consensus 413 ~i-~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~ 491 (627)
.. +.+..||.+++||+++|+|++.+|++|++++|+|+.++++++|.+|+|+++|+..++.+|++|++.++++.++..++
T Consensus 1173 ~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~ 1252 (1391)
T KOG0065|consen 1173 LQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTL 1252 (1391)
T ss_pred hhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44 45557889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCcccccc
Q 006897 492 VLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSW 564 (627)
Q Consensus 492 ~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~ 564 (627)
|+++.+++||..+|+.+.+.++.++.+|+||++|++.||.||+|+||+||+.|-.++|+..++++.+..|...
T Consensus 1253 Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~ 1325 (1391)
T KOG0065|consen 1253 GMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDS 1325 (1391)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888654
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-78 Score=694.45 Aligned_cols=537 Identities=26% Similarity=0.422 Sum_probs=462.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
...+|+|+|+-++|||++.++||.||||||||++|+|-+.......|+|.+||++..+... ++.++|++|+|.++|.||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~-~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP-KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc-CceEEeccccccccceeE
Confidence 3579999999999999999999999999999999999887544345899999998543222 778999999999999999
Q ss_pred HHHHHHHHHHhcCCC-----CCHHHHHH-HHHHHHHHcCCccccCCcC---------CccccC-----------------
Q 006897 163 VKETLMFSANFRLKG-----MSHKEKED-RVESLMDELGLTHVAGSFV---------GDEENR----------------- 210 (627)
Q Consensus 163 V~e~l~~~~~~~~~~-----~~~~~~~~-~v~~~l~~lgL~~~~~~~~---------gGe~qr----------------- 210 (627)
|+|.|.|+++++.++ ..+.+..+ ..+.+++.+||++++|+++ ||||+|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 999999999987763 22333222 5788999999999999886 899999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHHHhcCCCCCCCCC
Q 006897 211 -GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLN 289 (627)
Q Consensus 211 -PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~~~~g~~~p~~~~ 289 (627)
+|.|||+.++.++++.|+++++..+.|.+++.||++.++.+++|+|++|.+|+++++|+.+++.++|++.|+.||++.+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCcccccCCCC------CC-cchhh----hccCCc----ccc-----cccCCCcccccccccHHHHHHHH
Q 006897 290 AIEFAMEIMHPLEDSYSNNNN------FL-PSVED----AEQFPD----LRC-----EKVGGVEHQQHAFFLILYEIMVL 349 (627)
Q Consensus 290 ~~d~~~~~~~~~~~~~~~~~~------~~-~~~~~----~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~q~~~l 349 (627)
++||+.++.+..++......+ .. .+..+ .+.... +.. .+.......+.+..+.|.|++.+
T Consensus 366 ~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c 445 (1391)
T KOG0065|consen 366 TADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKAC 445 (1391)
T ss_pred HHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHH
Confidence 999999998843332211111 00 01110 000000 000 01111123456778999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHh
Q 006897 350 CSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVR-KDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEA 428 (627)
Q Consensus 350 ~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~-~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~~~~er~v~~rE~ 428 (627)
++|.|..+.||..++..++++.+++|+++|++|++++ .+..+.+.|.|++||++++.++.++++++..++.|+||+|||
T Consensus 446 ~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr 525 (1391)
T KOG0065|consen 446 TIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHR 525 (1391)
T ss_pred HHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhh
Confidence 9999999999999999999999999999999999999 778889999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 006897 429 SREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSL 508 (627)
Q Consensus 429 ~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~ 508 (627)
...+|++++|.++.++.++|+.++.+++|.+|+||++||.+++.+||.|++++++...|+.++++++++++++...|+++
T Consensus 526 ~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~ 605 (1391)
T KOG0065|consen 526 DLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLI 605 (1391)
T ss_pred cccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCC--CCCccc--------
Q 006897 509 ICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDG--DHFSKC-------- 578 (627)
Q Consensus 509 ~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~--~~~~~c-------- 578 (627)
+++.++.+.+++||+||.++||+||+|++|+||+.|++|+++.|||++++..|.+. +|+.++ ..+..|
T Consensus 606 g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~--gp~y~n~~~~~~~c~~~~~~~G 683 (1391)
T KOG0065|consen 606 GGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPS--GPAYDNISIENKVCAATGATLG 683 (1391)
T ss_pred hHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCC--CCcccccccccccchhhccccC
Confidence 99999999999999999999999999999999999999999999999999999732 222221 111233
Q ss_pred --ccchHHHHh-hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006897 579 --LLTGNDVLK-SRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRA 622 (627)
Q Consensus 579 --~~~G~~~L~-~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 622 (627)
.+.|.++++ .|++++.+.|+|++|++||.++|.++..+++.+.+
T Consensus 684 ~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 684 NDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred ceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 245566663 47777899999999999999999999999998875
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-45 Score=347.24 Aligned_cols=198 Identities=27% Similarity=0.488 Sum_probs=180.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+|+| +..++|+|||++|++||+++|+||||||||||||||.|+.+|++ |+|.++|
T Consensus 2 mi~i~~l~K~f---------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g 63 (240)
T COG1126 2 MIEIKNLSKSF---------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDG 63 (240)
T ss_pred eEEEEeeeEEe---------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECC
Confidence 69999999999 45679999999999999999999999999999999999999875 9999999
Q ss_pred ccCC---ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccc
Q 006897 136 HQIK---KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEE 208 (627)
Q Consensus 136 ~~~~---~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~ 208 (627)
+++. +...+|+++|+|||+.+|||.+||.||+.++.. +..+.++++.++++.++|+++||.+.++. ++||||
T Consensus 64 ~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~-~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQq 142 (240)
T COG1126 64 EDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV-KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQ 142 (240)
T ss_pred EeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH-HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHH
Confidence 7753 245689999999999999999999999999753 44567899999999999999999887764 559999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| |||+|||....++++.+++++++ |.|+|++||++.. +.+.+|||++|++|++++.|++
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p 220 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPP 220 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCH
Confidence 99 99999999999999999999975 9999999999996 8899999999999999999999
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 221 ~~~f 224 (240)
T COG1126 221 EEFF 224 (240)
T ss_pred HHHh
Confidence 8763
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-43 Score=338.05 Aligned_cols=199 Identities=24% Similarity=0.451 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
||+++||||.|. ++.+++|+||+|++||+++++|||||||||+||+|.+++.|++ |+|.+||
T Consensus 1 MI~~~nvsk~y~---------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~---G~I~i~g 62 (309)
T COG1125 1 MIEFENVSKRYG---------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDG 62 (309)
T ss_pred CceeeeeehhcC---------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCC---ceEEECC
Confidence 589999999993 4579999999999999999999999999999999999999975 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--ccC----CcCCcc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--VAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~----~~~gGe 207 (627)
+++.+ ..++|++||||-|...|||++||.||+.+...+ .++++++.+++++++|+.+||+. .++ .++|||
T Consensus 63 ~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L--~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQ 140 (309)
T COG1125 63 EDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL--LGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQ 140 (309)
T ss_pred eecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh--cCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcch
Confidence 99854 568999999999999999999999999997654 46788999999999999999974 444 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| |+++|||.++.++-+.++++.++.|+|||++|||++ |+.+++|||.+|++|+++..++
T Consensus 141 QQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 141 QQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred hhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCC
Confidence 999 999999999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHH
Q 006897 270 LELLEE 275 (627)
Q Consensus 270 ~~~~~~ 275 (627)
|+++..
T Consensus 220 P~~il~ 225 (309)
T COG1125 220 PDEILA 225 (309)
T ss_pred HHHHHh
Confidence 998754
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-42 Score=342.86 Aligned_cols=203 Identities=28% Similarity=0.431 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+|.|..+ .++...+|+||||+|++||++||||.||||||||+|++.++.+|++ |+|.++|
T Consensus 1 mI~l~~vsK~~~~~----------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pts---G~v~v~G 67 (339)
T COG1135 1 MIELENVSKTFGQT----------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS---GSVFVDG 67 (339)
T ss_pred CeEEEeeeeeeccC----------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---ceEEEcC
Confidence 58999999999532 1234579999999999999999999999999999999999999975 9999999
Q ss_pred ccCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCc
Q 006897 136 HQIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGD 206 (627)
Q Consensus 136 ~~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gG 206 (627)
+++.. ...+|++||++||+..|+...||.||++|++.+. +.++++.++|+.++|+.+||++.++++ +||
T Consensus 68 ~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia--g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGG 145 (339)
T COG1135 68 QDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA--GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGG 145 (339)
T ss_pred EecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc--CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcc
Confidence 88742 2567899999999999999999999999997654 578999999999999999999887765 499
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|||| +||+|||.+.+.|+++|+++.++.|.||+++||+++. +.++|||+.+|++|++++.|
T Consensus 146 QKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~G~lvE~G 224 (339)
T COG1135 146 QKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQGRLVEEG 224 (339)
T ss_pred hhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeCCEEEEec
Confidence 9999 8999999999999999999999999999999999995 89999999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+..++.
T Consensus 225 ~v~~vF 230 (339)
T COG1135 225 TVSEVF 230 (339)
T ss_pred cHHHhh
Confidence 987763
No 13
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.4e-41 Score=339.14 Aligned_cols=200 Identities=31% Similarity=0.479 Sum_probs=177.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|.+ |+|.++|
T Consensus 2 ~L~~~~ls~~y~---------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~---G~V~l~g 63 (258)
T COG1120 2 MLEVENLSFGYG---------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDG 63 (258)
T ss_pred eeEEEEEEEEEC---------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECC
Confidence 689999999993 4579999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHcCCccccCC----cCCcc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM--SHKEKEDRVESLMDELGLTHVAGS----FVGDE 207 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe 207 (627)
+++.+ .+++.+.+|||||.+...+.+||+|.+.++..-+.... ..+++++.++++|+.+|+.+.+++ ++|||
T Consensus 64 ~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGe 143 (258)
T COG1120 64 KDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGE 143 (258)
T ss_pred CchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhH
Confidence 99743 57788999999999887778999999999854322222 245566789999999999987765 45999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
||| ||+.||...+.+++++++++++++|+|||+++||++. +.++||++++|++|++++.|+
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecC
Confidence 999 9999999999999999999998889999999999996 899999999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
|+++.
T Consensus 223 p~evl 227 (258)
T COG1120 223 PEEVL 227 (258)
T ss_pred cchhc
Confidence 88763
No 14
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-41 Score=323.50 Aligned_cols=207 Identities=29% Similarity=0.448 Sum_probs=181.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.|+ +++++|+||||+|++||++||+||||||||||||+|+|+..|+. |+|.++
T Consensus 2 ~~i~~~nl~k~yp--------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~---G~i~~~ 64 (258)
T COG3638 2 MMIEVKNLSKTYP--------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS---GEILFN 64 (258)
T ss_pred ceEEEeeeeeecC--------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc---ceEEec
Confidence 3799999999995 34579999999999999999999999999999999999998864 999999
Q ss_pred CccCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHcCCccc----
Q 006897 135 CHQIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL------KGMSHKEKEDRVESLMDELGLTHV---- 199 (627)
Q Consensus 135 g~~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~---- 199 (627)
|.++.. .+++|+++||+||++.|.+.+||.+|+..+..-+. -+...++.+.++.++|+++|+.+.
T Consensus 65 g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr 144 (258)
T COG3638 65 GVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR 144 (258)
T ss_pred ccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH
Confidence 988642 24678899999999999999999999998742221 123345667889999999999764
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
+++++|||+|| |++.|||.+++++|+.|++++++.|.|+|++.|+++. +.++|||++-|++
T Consensus 145 a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~ 223 (258)
T COG3638 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKA 223 (258)
T ss_pred hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecC
Confidence 57888999999 9999999999999999999999999999999999996 8999999999999
Q ss_pred CeEEeeCCHHHHHHHHHh
Q 006897 262 GSVVHYGSLELLEETINN 279 (627)
Q Consensus 262 G~iv~~G~~~~~~~~~~~ 279 (627)
|+++++|+++++.+....
T Consensus 224 G~ivfDg~~~el~~~~~~ 241 (258)
T COG3638 224 GRIVFDGPASELTDEALD 241 (258)
T ss_pred CcEEEeCChhhhhHHHHH
Confidence 999999999987665443
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.1e-41 Score=323.88 Aligned_cols=202 Identities=29% Similarity=0.390 Sum_probs=182.4
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...|++++|+++| +++.|++||||+|++||+++|+||||||||||||+|.|+++|++ |+|.+
T Consensus 6 ~~~I~vr~v~~~f---------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~---GeI~i 67 (263)
T COG1127 6 EPLIEVRGVTKSF---------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK---GEILI 67 (263)
T ss_pred cceEEEeeeeeec---------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCC---CeEEE
Confidence 3479999999999 45679999999999999999999999999999999999999975 99999
Q ss_pred CCccCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-cC----Cc
Q 006897 134 NCHQIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-AG----SF 203 (627)
Q Consensus 134 ~g~~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~----~~ 203 (627)
+|+++.. ..++|+++|++||+..||..+||+||+.|..+-+ .+.+++..++.+..-|+.+||... ++ .+
T Consensus 68 ~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~-~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsEL 146 (263)
T COG1127 68 DGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH-TKLPESLIRELVLMKLELVGLRGAAADLYPSEL 146 (263)
T ss_pred cCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh-ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhh
Confidence 9999743 2357899999999999999999999999987543 346888899999999999999866 43 45
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+||+++| ||+||||.++..+.++++++.++.|.|+++||||++ ++..+|||+++|.+|+|+
T Consensus 147 SGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVI 225 (263)
T ss_pred cchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEE
Confidence 6999998 999999999999999999999999999999999999 599999999999999999
Q ss_pred eeCCHHHHHH
Q 006897 266 HYGSLELLEE 275 (627)
Q Consensus 266 ~~G~~~~~~~ 275 (627)
+.|+++++.+
T Consensus 226 ~~Gt~~el~~ 235 (263)
T COG1127 226 AEGTPEELLA 235 (263)
T ss_pred EeCCHHHHHh
Confidence 9999998854
No 16
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-41 Score=348.99 Aligned_cols=201 Identities=25% Similarity=0.416 Sum_probs=182.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++||+++|+ +..+|+|+|++|++||+++|+||||||||||||+|+|+..|++ |+|.++
T Consensus 4 ~~l~i~~v~k~yg---------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~---G~I~l~ 65 (352)
T COG3842 4 PALEIRNVSKSFG---------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEILLD 65 (352)
T ss_pred ceEEEEeeeeecC---------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEC
Confidence 3699999999993 4579999999999999999999999999999999999999975 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr 210 (627)
|+++.+..-.+|.||+|||+..|||+|||+||++|+++.+ ...++++.+++++++|+.++|++.++++ +|||+||
T Consensus 66 G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~-~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQR 144 (352)
T COG3842 66 GEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR-KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQR 144 (352)
T ss_pred CEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc-CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHH
Confidence 9998665556889999999999999999999999998633 2235567889999999999999877654 5999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
|+|+||..-+.++...|+++.++.|.|.|++|||.+ |+..++|||++|++|+|...|+|++
T Consensus 145 VALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~e 223 (352)
T COG3842 145 VALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEE 223 (352)
T ss_pred HHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHH
Confidence 999999999999999999999999999999999998 6899999999999999999999998
Q ss_pred HHH
Q 006897 273 LEE 275 (627)
Q Consensus 273 ~~~ 275 (627)
+..
T Consensus 224 iY~ 226 (352)
T COG3842 224 IYE 226 (352)
T ss_pred Hhh
Confidence 843
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-40 Score=344.14 Aligned_cols=200 Identities=23% Similarity=0.419 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+ +..+|+|+|++|++||+++|+||||||||||||+|+|+.+|++ |+|.++|
T Consensus 3 ~i~l~~v~K~yg---------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~---G~I~i~g 64 (338)
T COG3839 3 ELELKNVRKSFG---------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GEILIDG 64 (338)
T ss_pred EEEEeeeEEEcC---------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 699999999994 2228999999999999999999999999999999999999975 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr- 210 (627)
+++.+..-.+|.||+|||+..|||.|||+||+.|+++. .+.++++.+++++++.+.++|++..+++ +||||||
T Consensus 65 ~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~--~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRV 142 (338)
T COG3839 65 RDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL--RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRV 142 (338)
T ss_pred EECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh--CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHH
Confidence 99865444568899999999999999999999999755 4567899999999999999999888765 4999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
|+|+||+..+..+...|+++.++.|.|+|.+|||.. |+..++|||++|++|++...|+|.++
T Consensus 143 AlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 143 ALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred HHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHH
Confidence 999999999999999999999999999999999987 69999999999999999999999988
Q ss_pred HHH
Q 006897 274 EET 276 (627)
Q Consensus 274 ~~~ 276 (627)
.+.
T Consensus 222 y~~ 224 (338)
T COG3839 222 YER 224 (338)
T ss_pred hhC
Confidence 643
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.1e-39 Score=336.15 Aligned_cols=204 Identities=35% Similarity=0.530 Sum_probs=180.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++||+++|+. .+.+|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 4 ~i~~~~l~k~~~~--------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~---G~i~i~G 66 (293)
T COG1131 4 VIEVRNLTKKYGG--------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS---GEILVLG 66 (293)
T ss_pred eeeecceEEEeCC--------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEEcC
Confidence 5889999999931 3579999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
.+... ..+.++++||+||++.+++.+||+|||.|.+.++.. +....+++++++++.+||.+..+ .+++|+|||
T Consensus 67 ~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqr 144 (293)
T COG1131 67 YDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL--SKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQR 144 (293)
T ss_pred EeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHH
Confidence 88643 467889999999999999999999999999877643 33556789999999999987443 456999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+||||.++.++++.|++++++.|+||+++||+++ ++.++||||++|++|++++.|++++
T Consensus 145 l~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~ 223 (293)
T COG1131 145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEE 223 (293)
T ss_pred HHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 999999999999999999999875589999999999 6999999999999999999999998
Q ss_pred HHHHHHh
Q 006897 273 LEETINN 279 (627)
Q Consensus 273 ~~~~~~~ 279 (627)
+...+..
T Consensus 224 l~~~~~~ 230 (293)
T COG1131 224 LKEKFGG 230 (293)
T ss_pred HHHhhcc
Confidence 7766543
No 19
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.9e-39 Score=314.96 Aligned_cols=192 Identities=32% Similarity=0.508 Sum_probs=165.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++++||++.|..+. ...++|+++||+|++||++||+|||||||||||++|.|+.+|++ |.+.++|
T Consensus 1 ~i~~~~v~k~y~~~~-----------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~---G~v~i~g 66 (226)
T COG1136 1 MIELKNVSKIYGLGG-----------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLING 66 (226)
T ss_pred CcEEeeeEEEeccCC-----------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECC
Confidence 367999999995432 23579999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC-----hhhhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC-----CcC
Q 006897 136 HQIKK-----PAQLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG-----SFV 204 (627)
Q Consensus 136 ~~~~~-----~~~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----~~~ 204 (627)
+++.. ...+| ++||||||+..|.|.+||.||+.+++.+. +.+..+.+++++++++.+||.+..+ +++
T Consensus 67 ~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~--~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLS 144 (226)
T COG1136 67 KDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA--GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELS 144 (226)
T ss_pred EEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc--CCChhHHHHHHHHHHHhcCChhhhccCCchhcC
Confidence 88742 12344 57999999999999999999999987543 3333367788999999999985443 566
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
|||||| ||.+||+.+.+++++++++++++.|+|||++|||+. +..+|||++.|++|++.
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCeee
Confidence 999999 999999999999999999999888999999999986 78999999999999943
No 20
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-39 Score=316.70 Aligned_cols=185 Identities=25% Similarity=0.469 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++++++.|. ...+|+||||+|++||+++|+||||||||||||+|+|+.+|++ |+|.++|
T Consensus 3 ~l~i~~v~~~f~---------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~---G~V~~~g 64 (248)
T COG1116 3 LLEIEGVSKSFG---------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDG 64 (248)
T ss_pred eEEEEeeEEEeC---------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 689999999994 3579999999999999999999999999999999999999974 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++. .-...+|||||++.++|.+||+||+.++.... +.++++.+++++++|+.+||.+..++ ++||+|||
T Consensus 65 ~~v~---~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~--~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRV 139 (248)
T COG1116 65 RPVT---GPGPDIGYVFQEDALLPWLTVLDNVALGLELR--GKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRV 139 (248)
T ss_pred cccC---CCCCCEEEEeccCcccchhhHHhhheehhhcc--ccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHH
Confidence 8852 33567999999999999999999999997654 34677788899999999999877665 45999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC--CeE
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR--GSV 264 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~--G~i 264 (627)
|+++||+.++.++.+.|.++.++.++||++||||.+ |+..++|||++|.+ |+|
T Consensus 140 aiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 140 AIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCCCcce
Confidence 999999999999999999999999999999999999 68899999999998 444
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=323.42 Aligned_cols=201 Identities=25% Similarity=0.427 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|+++.++ ...+++|||++|+.||++|++||||||||||||+|+|+..|+. |.|.+||
T Consensus 2 ~i~i~~~~~~~~---------------~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~---G~I~~~~ 63 (345)
T COG1118 2 SIRINNVKKRFG---------------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLNG 63 (345)
T ss_pred ceeehhhhhhcc---------------cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC---ceEEECC
Confidence 588999999883 4568999999999999999999999999999999999999975 9999999
Q ss_pred c---cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC----Cccc
Q 006897 136 H---QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV----GDEE 208 (627)
Q Consensus 136 ~---~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~----gGe~ 208 (627)
+ |..+...-.++||||||+..+|+.|||.|||+|+++.+....++.+++.++.++|+.+.|++.+++++ |||+
T Consensus 64 ~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQr 143 (345)
T COG1118 64 RVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQR 143 (345)
T ss_pred EeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHH
Confidence 9 42222333478999999999999999999999998766333467788999999999999998887654 9999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| |+++||...+.++.+-|+++.++.|.|++++|||++ |+.++||||++|++|+|...|++
T Consensus 144 QRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p 222 (345)
T COG1118 144 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPP 222 (345)
T ss_pred HHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCH
Confidence 99 999999999999999999999888999999999998 69999999999999999999999
Q ss_pred HHHHH
Q 006897 271 ELLEE 275 (627)
Q Consensus 271 ~~~~~ 275 (627)
+++.+
T Consensus 223 ~ev~~ 227 (345)
T COG1118 223 DEVYD 227 (345)
T ss_pred HHHhc
Confidence 98854
No 22
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-38 Score=314.57 Aligned_cols=198 Identities=22% Similarity=0.444 Sum_probs=166.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|+++.|.. . ++|+||||++++||+++|+||||||||||+|+|+|+++|.. |+|.++
T Consensus 3 ~~i~v~nl~v~y~~--------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~---G~i~~~ 64 (254)
T COG1121 3 PMIEVENLTVSYGN--------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---GEIKIF 64 (254)
T ss_pred cEEEEeeeEEEECC--------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---ceEEEc
Confidence 37999999999941 2 59999999999999999999999999999999999999974 999999
Q ss_pred CccCCChhhhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCccccCCc----CC
Q 006897 135 CHQIKKPAQLRKICGFVAQED---NLLPLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDELGLTHVAGSF----VG 205 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~----~g 205 (627)
|++... ..-+.+||||||.. .-|| +||+|.+..+...+.. +...++.+++++++|+.+|+.+.+++. +|
T Consensus 65 g~~~~~-~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSG 142 (254)
T COG1121 65 GKPVRK-RRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSG 142 (254)
T ss_pred cccccc-cccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCc
Confidence 987432 22246899999964 3466 6999999987432221 122344578999999999999887754 59
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| |++|+|+.++.++.++|++++++ |+||+++|||++. +.++||+|+.|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~-v~~~~D~vi~Ln-~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGL-VMAYFDRVICLN-RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHH-hHhhCCEEEEEc-CeeEec
Confidence 99999 99999999999999999999887 9999999999995 999999999996 578899
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+++++.+
T Consensus 220 G~~~~~~~ 227 (254)
T COG1121 220 GPPEEVLT 227 (254)
T ss_pred cChhhccC
Confidence 99988743
No 23
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=8e-39 Score=298.08 Aligned_cols=193 Identities=30% Similarity=0.446 Sum_probs=172.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
||+++||++.|.. .+.+|+||||+|++||++-|+||||||||||||+|.+..+|+. |+|.++|
T Consensus 1 mI~f~~V~k~Y~~--------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~ 63 (223)
T COG2884 1 MIRFENVSKAYPG--------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNG 63 (223)
T ss_pred CeeehhhhhhcCC--------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECC
Confidence 5899999999952 2569999999999999999999999999999999999999975 9999999
Q ss_pred ccCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. ..-+|++||+||||..|.+.+||+||++|+.+. .+.++++.++++.++|+.+||.+.++ +++||
T Consensus 64 ~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v--~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGG 141 (223)
T COG2884 64 HDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV--IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGG 141 (223)
T ss_pred eecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc--cCCCHHHHHHHHHHHHHHhccchhhhcCccccCch
Confidence 99843 245799999999999999999999999998754 45678899999999999999987665 55699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|||| ||.+|||..+.+|++++.++.+ .|+||+|.|||.+. +.++-.|++.|++|+++.+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~l-v~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLEL-VNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHH-HHhccCcEEEEeCCEEEecc
Confidence 9999 9999999999999999999976 69999999999984 77777899999999998764
Q ss_pred C
Q 006897 269 S 269 (627)
Q Consensus 269 ~ 269 (627)
.
T Consensus 220 ~ 220 (223)
T COG2884 220 S 220 (223)
T ss_pred c
Confidence 3
No 24
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=299.24 Aligned_cols=201 Identities=26% Similarity=0.433 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
||++.+++++|++ ..++++||||++++||++||+|||||||||+||+|++++.|++ |.|+++|
T Consensus 1 Ml~v~~l~K~y~~--------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~---G~v~idg 63 (245)
T COG4555 1 MLEVTDLTKSYGS--------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS---GKVTIDG 63 (245)
T ss_pred CeeeeehhhhccC--------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC---ceEEEee
Confidence 5899999999942 2358999999999999999999999999999999999999975 9999999
Q ss_pred ccCC-ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC----CccccC
Q 006897 136 HQIK-KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV----GDEENR 210 (627)
Q Consensus 136 ~~~~-~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~----gGe~qr 210 (627)
.+.. ++...|++||.++.+..++..||++|||.|.+++. ++..++.+++++++.+.++|.++.|+.+ -|+|||
T Consensus 64 ~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~--~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqk 141 (245)
T COG4555 64 VDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN--GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQK 141 (245)
T ss_pred cccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHH
Confidence 8864 46778999999998889999999999999988654 5677888999999999999999988766 588887
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||||||..+...+.+.++++.+ .|++||++||.++ |+..+|||+++|++|++++.|+.++
T Consensus 142 V~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 142 VAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred HHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHH
Confidence 9999999999999999999975 5999999999998 6999999999999999999999988
Q ss_pred HHHHH
Q 006897 273 LEETI 277 (627)
Q Consensus 273 ~~~~~ 277 (627)
+.+.-
T Consensus 220 l~~r~ 224 (245)
T COG4555 220 LDART 224 (245)
T ss_pred HHHHH
Confidence 76543
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.2e-37 Score=328.99 Aligned_cols=202 Identities=22% Similarity=0.373 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+ ++.+++|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 mI~~~~lsk~y~~~-----------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~---G~I~i~G 66 (343)
T TIGR02314 1 MIKLSNITKVFHQG-----------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS---GSVIVDG 66 (343)
T ss_pred CEEEEEEEEEECCC-----------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECC
Confidence 48999999999421 123469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gG 206 (627)
+++.. . ...|++|||+||+..+++.+||+||+.++... .+.++++.++++.++++.+||.+..++ ++||
T Consensus 67 ~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~--~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgG 144 (343)
T TIGR02314 67 QDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL--DNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGG 144 (343)
T ss_pred EECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHH
Confidence 98743 2 23577899999999999999999999997643 234566778889999999999876664 5599
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||++||+.++..++++|++++++.|.|||++||+++ .+.++||++++|++|++++.|
T Consensus 145 qkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g 223 (343)
T TIGR02314 145 QKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQG 223 (343)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 9999 999999999999999999998767999999999998 488999999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 224 ~~~~v~ 229 (343)
T TIGR02314 224 TVSEIF 229 (343)
T ss_pred CHHHHH
Confidence 998763
No 26
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=330.04 Aligned_cols=199 Identities=18% Similarity=0.371 Sum_probs=177.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|. ++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++ |+|.++
T Consensus 5 ~~l~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~~~ 66 (351)
T PRK11432 5 NFVVLKNITKRFG---------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE---GQIFID 66 (351)
T ss_pred cEEEEEeEEEEEC---------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEEC
Confidence 3799999999993 3458999999999999999999999999999999999999864 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr 210 (627)
|+++......++.+|||||+..+||.+||+||+.|+.+.+ +.++++.+++++++++.+||.+..++ ++|||+||
T Consensus 67 g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~--~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QR 144 (351)
T PRK11432 67 GEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML--GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQR 144 (351)
T ss_pred CEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 9987543334678999999999999999999999987543 34566778899999999999876654 45999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
|+++||+..+.++.+.|+++.++.|+|+|++|||++ ++.++|||+++|++|+++..|++++
T Consensus 145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999998777999999999998 5899999999999999999999988
Q ss_pred HH
Q 006897 273 LE 274 (627)
Q Consensus 273 ~~ 274 (627)
+.
T Consensus 224 ~~ 225 (351)
T PRK11432 224 LY 225 (351)
T ss_pred HH
Confidence 74
No 27
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.3e-37 Score=330.64 Aligned_cols=199 Identities=24% Similarity=0.434 Sum_probs=177.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~---G~I~i~g 65 (353)
T TIGR03265 4 YLSIDNIRKRFG---------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGG 65 (353)
T ss_pred EEEEEEEEEEeC---------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCc---eEEEECC
Confidence 699999999993 3458999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++.+....++.+|||||+..+||.+||+||+.|+...+ +.++++.+++++++++.+||++..++ ++|||+||
T Consensus 66 ~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~--~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRv 143 (353)
T TIGR03265 66 RDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR--GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRV 143 (353)
T ss_pred EECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHH
Confidence 987543334678999999999999999999999986532 34566778899999999999877665 45999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
|+++||+..+.++.+.|+++.++.|.|+|++|||++ ++.++|||+++|++|+++..|+++++
T Consensus 144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 144 ALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999998877999999999998 68999999999999999999999887
Q ss_pred HH
Q 006897 274 EE 275 (627)
Q Consensus 274 ~~ 275 (627)
.+
T Consensus 223 ~~ 224 (353)
T TIGR03265 223 YR 224 (353)
T ss_pred Hh
Confidence 53
No 28
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.2e-37 Score=323.68 Aligned_cols=200 Identities=24% Similarity=0.385 Sum_probs=175.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 6 ~~i~i~~l~k~~~---------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~---G~v~i~ 67 (306)
T PRK13537 6 APIDFRNVEKRYG---------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA---GSISLC 67 (306)
T ss_pred ceEEEEeEEEEEC---------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEEC
Confidence 3799999999993 3469999999999999999999999999999999999999864 999999
Q ss_pred CccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcccc
Q 006897 135 CHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEEN 209 (627)
Q Consensus 135 g~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~q 209 (627)
|+++.. ....++++||+||++.+++.+||+||+.+.+..+ +.+.++..++++++++.++|.+..++ ++|||+|
T Consensus 68 G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 145 (306)
T PRK13537 68 GEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF--GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKR 145 (306)
T ss_pred CEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHH
Confidence 998643 3456788999999999999999999999866443 33455666788999999999876554 5599999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+.++|+++++ .|+|||++||+++ ++.++|||+++|++|++++.|+++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~ 223 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPH 223 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 8 9999999999999999999975 5899999999998 689999999999999999999998
Q ss_pred HHHHH
Q 006897 272 LLEET 276 (627)
Q Consensus 272 ~~~~~ 276 (627)
++.+.
T Consensus 224 ~l~~~ 228 (306)
T PRK13537 224 ALIES 228 (306)
T ss_pred HHHhc
Confidence 88654
No 29
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=329.89 Aligned_cols=199 Identities=21% Similarity=0.368 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++ |+|.++|
T Consensus 3 ~l~i~~l~~~~~--------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~---G~I~~~g 65 (356)
T PRK11650 3 GLKLQAVRKSYD--------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS---GEIWIGG 65 (356)
T ss_pred EEEEEeEEEEeC--------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECC
Confidence 689999999993 12459999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++.+....++.+|||||++.+||.+||+||+.|+.+.+ +.++++.+++++++++.+||++..++ ++|||+||
T Consensus 66 ~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRv 143 (356)
T PRK11650 66 RVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR--GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRV 143 (356)
T ss_pred EECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc--CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH
Confidence 987443334578999999999999999999999986432 34566677889999999999876654 56999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||++||+.++.++.+.|+++.++.|+|+|++|||++ ++.++||++++|++|+++..|+++++
T Consensus 144 alARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 144 AMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 999999999999999999998777999999999998 58999999999999999999999887
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 223 ~ 223 (356)
T PRK11650 223 Y 223 (356)
T ss_pred H
Confidence 4
No 30
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=302.16 Aligned_cols=201 Identities=27% Similarity=0.415 Sum_probs=173.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+.+. ...++|+||||+|++||++||+|+||||||||.++|+|+.+|+. |+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~-----------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~---G~I~~~G 68 (252)
T COG1124 3 LLSVRNLSIVYGGGK-----------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---GSILLDG 68 (252)
T ss_pred eEEEeceEEEecCCc-----------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---ceEEECC
Confidence 799999999996432 12369999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC---hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCC
Q 006897 136 HQIKK---PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVG 205 (627)
Q Consensus 136 ~~~~~---~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~g 205 (627)
++... .+.+++.|.+||||+ .+.|..||++.|.-+... .+.++ .++++.++|+.+||.+ ..++++|
T Consensus 69 ~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~--~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSG 144 (252)
T COG1124 69 KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP--HGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSG 144 (252)
T ss_pred cccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc--CCccH--HHHHHHHHHHHcCCCHHHHhcCchhcCh
Confidence 87532 135678899999996 588999999999987643 23333 3445999999999964 4466779
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| |||+||+..+.+|+++|.+++++.|.|.|++|||++. +..+|||+++|++|++++.
T Consensus 145 GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 145 GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeCCeEEEe
Confidence 99999 9999999999999999999999999999999999995 8999999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
++.+++..
T Consensus 224 ~~~~~l~~ 231 (252)
T COG1124 224 GPTEELLS 231 (252)
T ss_pred echhhhhc
Confidence 99988754
No 31
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-37 Score=307.86 Aligned_cols=201 Identities=25% Similarity=0.453 Sum_probs=176.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++++|++|+|+++ ..+|+|+|+++++||.++|+||||||||||+++|+|+++|.. |.|.++|
T Consensus 3 ~i~~~~l~~~y~~~--------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~---G~v~~~g 65 (235)
T COG1122 3 MIEAENLSFRYPGR--------------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS---GEVLVDG 65 (235)
T ss_pred eEEEEEEEEEcCCC--------------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC---CEEEECC
Confidence 68999999999421 469999999999999999999999999999999999999974 9999999
Q ss_pred ccCCC---hhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKK---PAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~---~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
.++.. ..++|+++|||+|++ ..+..-||.|.++|+.. ..+.++++.+++++++++.+|+.+.++ +++|||
T Consensus 66 ~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~--n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGq 143 (235)
T COG1122 66 LDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE--NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQ 143 (235)
T ss_pred eeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh--hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcc
Confidence 88542 467899999999996 23334599999999874 335677789999999999999987665 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++.++++.++++.++.|+|+|++|||++ .+..+|||+++|++|+++.+|+
T Consensus 144 kqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 144 KQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred eeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCC
Confidence 999 999999999999999999998877899999999999 5899999999999999999999
Q ss_pred HHHHHHH
Q 006897 270 LELLEET 276 (627)
Q Consensus 270 ~~~~~~~ 276 (627)
++++.+.
T Consensus 223 p~~i~~~ 229 (235)
T COG1122 223 PAEIFND 229 (235)
T ss_pred HHHHhhh
Confidence 8877543
No 32
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=295.09 Aligned_cols=199 Identities=25% Similarity=0.386 Sum_probs=172.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
..++++||++.| +++++|+|||++|++++++|+|||||||||||||++..+..... ...|+|.
T Consensus 6 ~~~~~~~l~~yY---------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~ 70 (253)
T COG1117 6 PAIEVRDLNLYY---------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVL 70 (253)
T ss_pred ceeEecceeEEE---------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEE
Confidence 368999999999 35679999999999999999999999999999999988765332 2359999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
++|+++.+ ..++|++||+|||.+..|| +|++||+.|+.+++ +..+++.++.|++.|+...|-+ -+
T Consensus 71 ~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~--g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa 147 (253)
T COG1117 71 LDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH--GIKDKELDEIVESSLKKAALWDEVKDRLHKSA 147 (253)
T ss_pred ECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhh--ccchHHHHHHHHHHHHHhHhHHHhHHHhhCCc
Confidence 99999843 4579999999999999999 79999999998664 4434788899999999988742 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| |||+|||.+..+|-+++.+|++ .-|||+|||++.. +.+..|+..++..|
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQ-AaRvSD~taFf~~G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQ-AARVSDYTAFFYLG 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHH-HHHHhHhhhhhccc
Confidence 3456999999 9999999999999999999974 5799999999995 89999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 225 ~LvE~g~T~~iF 236 (253)
T COG1117 225 ELVEFGPTDKIF 236 (253)
T ss_pred EEEEEcCHHhhh
Confidence 999999998763
No 33
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.1e-37 Score=327.22 Aligned_cols=199 Identities=22% Similarity=0.341 Sum_probs=176.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++
T Consensus 13 ~~L~l~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~---G~I~~~ 74 (375)
T PRK09452 13 PLVELRGISKSFD---------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS---GRIMLD 74 (375)
T ss_pred ceEEEEEEEEEEC---------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEEC
Confidence 4799999999993 3458999999999999999999999999999999999999864 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr 210 (627)
|+++......++.+|||||++.+||.+||+||+.|+.+.+ +.++.+.+++++++++.+||++..++ ++|||+||
T Consensus 75 g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QR 152 (375)
T PRK09452 75 GQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ--KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQR 152 (375)
T ss_pred CEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH
Confidence 9986443334578999999999999999999999986432 34556667889999999999876665 45999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
|+++||+..+..+.+.|+++.++.|+|+|++|||++ ++..+|||+++|++|+++..|++++
T Consensus 153 VaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999998877999999999998 5899999999999999999999988
Q ss_pred HH
Q 006897 273 LE 274 (627)
Q Consensus 273 ~~ 274 (627)
+.
T Consensus 232 i~ 233 (375)
T PRK09452 232 IY 233 (375)
T ss_pred HH
Confidence 74
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.2e-37 Score=325.47 Aligned_cols=200 Identities=21% Similarity=0.385 Sum_probs=174.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|. ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 2 ~L~i~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g 63 (353)
T PRK10851 2 SIEIANIKKSFG---------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHG 63 (353)
T ss_pred EEEEEEEEEEeC---------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 589999999993 2469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHcCCccccCC----cCCcccc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL--KGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEEN 209 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~q 209 (627)
+++......++.+|||||++.++|.+||+||+.|+..... .+.++++.+++++++++.+||++..++ ++|||+|
T Consensus 64 ~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~Q 143 (353)
T PRK10851 64 TDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQ 143 (353)
T ss_pred EECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence 9864433345789999999999999999999999864321 123456677899999999999876654 5599999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++.++.+.|+++.++.|+|+|++|||++ ++.++|||+++|++|++++.|+++
T Consensus 144 RvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~ 222 (353)
T PRK10851 144 RVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPD 222 (353)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9 999999999999999999998777899999999998 589999999999999999999998
Q ss_pred HHH
Q 006897 272 LLE 274 (627)
Q Consensus 272 ~~~ 274 (627)
++.
T Consensus 223 ~i~ 225 (353)
T PRK10851 223 QVW 225 (353)
T ss_pred HHH
Confidence 874
No 35
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=297.27 Aligned_cols=202 Identities=21% Similarity=0.444 Sum_probs=180.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|++++|+++| +++++++|+||++++|++++++|||||||||.+|+|.|++.|+. |+|.++|
T Consensus 2 ~L~ie~vtK~F---------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~---G~I~~~g 63 (300)
T COG4152 2 ALEIEGVTKSF---------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GEITWNG 63 (300)
T ss_pred ceEEecchhcc---------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccC---ceEEEcC
Confidence 58999999999 45679999999999999999999999999999999999999974 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr- 210 (627)
.++. ...+.+|||+|.+..|+|.+||.|.|.|.+.+ +++++++.++++..+|+++++....... +-|.+|+
T Consensus 64 ~~~~--~~~~~rIGyLPEERGLy~k~tv~dql~yla~L--kGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKI 139 (300)
T COG4152 64 GPLS--QEIKNRIGYLPEERGLYPKMTVEDQLKYLAEL--KGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKI 139 (300)
T ss_pred cchh--hhhhhhcccChhhhccCccCcHHHHHHHHHHh--cCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHH
Confidence 9853 45677899999999999999999999998865 5788999999999999999997665544 4555554
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
|+|||||.+.+.+-+.+.++++ .|.|||++||.++ .+.++||++++|++|+.|.+|+.+++
T Consensus 140 QfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~i 217 (300)
T COG4152 140 QFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDI 217 (300)
T ss_pred HHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHH
Confidence 9999999999999999999976 5999999999999 49999999999999999999999999
Q ss_pred HHHHHhcC
Q 006897 274 EETINNLG 281 (627)
Q Consensus 274 ~~~~~~~g 281 (627)
++.+....
T Consensus 218 r~~~Gkk~ 225 (300)
T COG4152 218 RRSFGKKR 225 (300)
T ss_pred HHhcCCce
Confidence 88765543
No 36
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-37 Score=286.74 Aligned_cols=196 Identities=22% Similarity=0.397 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|.+++|.++|.. .==..+++|+.||++||+||||||||||||+|+|...|.+ |+|++||
T Consensus 1 ~l~L~~V~~~y~~-----------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~---G~i~i~g 60 (231)
T COG3840 1 MLALDDVRFSYGH-----------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS---GEILING 60 (231)
T ss_pred CccccceEEeeCc-----------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCC---ceEEEcC
Confidence 3678899999942 2356889999999999999999999999999999999974 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr- 210 (627)
++.....-..|-++++||+.++|..+||.+|+.++..-.++ -.++.+++++.++.++||..+.+++ +||||||
T Consensus 61 ~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~Lk--L~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRv 138 (231)
T COG3840 61 VDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLK--LNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV 138 (231)
T ss_pred eecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccc--cCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHH
Confidence 99644444667899999999999999999999998532211 2356788999999999998776655 5999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
|+|.|||.-+.++..++.+++++.+.|++|+||+++ ++.+++||++++++|+|.++|+.+++
T Consensus 139 ALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 139 ALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred HHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHH
Confidence 999999999999999999999999999999999999 69999999999999999999998776
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 218 ~ 218 (231)
T COG3840 218 L 218 (231)
T ss_pred h
Confidence 4
No 37
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=9.4e-37 Score=324.60 Aligned_cols=201 Identities=23% Similarity=0.378 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+ ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++. .|+|.++|
T Consensus 5 ~l~~~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~-~G~i~~~g 68 (362)
T TIGR03258 5 GIRIDHLRVAYG---------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL-TGRIAIAD 68 (362)
T ss_pred EEEEEEEEEEEC---------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-CEEEEECC
Confidence 589999999993 24599999999999999999999999999999999999988532 29999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++.+....++.+|||+|+..+||.+||+||+.|+...+ +.++++.+++++++++.+||++..++ ++|||+||
T Consensus 69 ~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~--~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRv 146 (362)
T TIGR03258 69 RDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ--KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRI 146 (362)
T ss_pred EECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHH
Confidence 986433334678999999999999999999999986532 34566777889999999999877665 45999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAK-QRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~-g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
|++|||+..+.++.+.|+++.++. |+|+|++|||++ ++.++||||++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999998765 799999999998 5899999999999999999999988
Q ss_pred HHH
Q 006897 273 LEE 275 (627)
Q Consensus 273 ~~~ 275 (627)
+.+
T Consensus 226 ~~~ 228 (362)
T TIGR03258 226 LYD 228 (362)
T ss_pred HHh
Confidence 753
No 38
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.5e-36 Score=320.89 Aligned_cols=201 Identities=26% Similarity=0.365 Sum_probs=175.1
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++|+ ++.+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 39 ~~~i~i~nl~k~y~---------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~---G~i~i 100 (340)
T PRK13536 39 TVAIDLAGVSKSYG---------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITV 100 (340)
T ss_pred ceeEEEEEEEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCc---eEEEE
Confidence 34799999999993 3469999999999999999999999999999999999999864 99999
Q ss_pred CCccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccc
Q 006897 134 NCHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEE 208 (627)
Q Consensus 134 ~g~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~ 208 (627)
+|+++.. ....++.+||+||++.+++.+||.||+.+....+ +.+..+..++++++++.+||.+..++ ++|||+
T Consensus 101 ~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~k 178 (340)
T PRK13536 101 LGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF--GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMK 178 (340)
T ss_pred CCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHH
Confidence 9998643 3456788999999999999999999999765433 23445566778899999999876654 569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++.+++++|+++++ .|+|||++||+++ ++.++||||++|++|++++.|++
T Consensus 179 qrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~ 256 (340)
T PRK13536 179 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRP 256 (340)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 98 9999999999999999999976 5899999999998 68999999999999999999999
Q ss_pred HHHHHH
Q 006897 271 ELLEET 276 (627)
Q Consensus 271 ~~~~~~ 276 (627)
+++.+.
T Consensus 257 ~~l~~~ 262 (340)
T PRK13536 257 HALIDE 262 (340)
T ss_pred HHHHhh
Confidence 988654
No 39
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=323.26 Aligned_cols=201 Identities=22% Similarity=0.359 Sum_probs=177.2
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++|++++|. ++.+|+|+||++++||+++|+||||||||||||+|+|+.+|+. |+|.+
T Consensus 17 ~~~l~l~~v~~~~~---------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i 78 (377)
T PRK11607 17 TPLLEIRNLTKSFD---------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIML 78 (377)
T ss_pred CceEEEEeEEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEE
Confidence 34799999999993 2458999999999999999999999999999999999999864 99999
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcccc
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEEN 209 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~q 209 (627)
+|+++.+....++.+|||||++.+||.+||.||+.|+.+.+ +.++++.++++.++++.+||.+..++ ++|||+|
T Consensus 79 ~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~--~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~Q 156 (377)
T PRK11607 79 DGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD--KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQ 156 (377)
T ss_pred CCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 99986443345678999999999999999999999986432 33566777889999999999876654 5599999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| |+++||+..+..+.+.|+++.++.|.|+|++|||++ ++..+|||+++|++|+++..|+++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~ 235 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPE 235 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHH
Confidence 9 999999999999999999998777999999999998 689999999999999999999998
Q ss_pred HHHH
Q 006897 272 LLEE 275 (627)
Q Consensus 272 ~~~~ 275 (627)
++.+
T Consensus 236 ~~~~ 239 (377)
T PRK11607 236 EIYE 239 (377)
T ss_pred HHHh
Confidence 8753
No 40
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-36 Score=305.78 Aligned_cols=198 Identities=28% Similarity=0.443 Sum_probs=169.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~ 62 (235)
T cd03261 1 IELRGLTKSFG---------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS---GEVLIDGE 62 (235)
T ss_pred CeEEEEEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 47899999993 2459999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 137 QIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 137 ~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
++.. . ..+++.++||+|++.+++.+||+||+.++.... ...++++..+++.++++.+||.+..+ .++|||
T Consensus 63 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 141 (235)
T cd03261 63 DISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREH-TRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGM 141 (235)
T ss_pred EccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence 8632 1 345778999999999999999999999875322 12344556678899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+++.|++++++.|+|||++|||++ ++.++||++++|++|++++.|+
T Consensus 142 ~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~ 220 (235)
T cd03261 142 KKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGT 220 (235)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecC
Confidence 999 999999999999999999997655899999999998 5888999999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 221 ~~~~~ 225 (235)
T cd03261 221 PEELR 225 (235)
T ss_pred HHHHc
Confidence 87653
No 41
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-37 Score=299.38 Aligned_cols=202 Identities=25% Similarity=0.383 Sum_probs=177.2
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++||+++| +..++++||||++++||+++||||||||||||+|+|+|.++|++ |+|.++
T Consensus 3 ~lL~v~~l~k~F---------------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~---G~v~~~ 64 (250)
T COG0411 3 PLLEVRGLSKRF---------------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFR 64 (250)
T ss_pred ceeeeccceeec---------------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC---ceEEEC
Confidence 368999999999 45679999999999999999999999999999999999999975 999999
Q ss_pred CccCCC--h-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC--------CC--CCHHHHHHHHHHHHHHcCCccccC
Q 006897 135 CHQIKK--P-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL--------KG--MSHKEKEDRVESLMDELGLTHVAG 201 (627)
Q Consensus 135 g~~~~~--~-~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--------~~--~~~~~~~~~v~~~l~~lgL~~~~~ 201 (627)
|+++.. + +..|..++--||...+|++|||.||+..+...+. +. ...++..+++.++|+.+||.+.++
T Consensus 65 G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~ 144 (250)
T COG0411 65 GRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELAD 144 (250)
T ss_pred CcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhc
Confidence 999843 2 3456779999999999999999999999864321 11 134667889999999999998877
Q ss_pred Cc----CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 202 SF----VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 202 ~~----~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
+. ++|+++| |.+||.+....++.+.|+++.++.|.||++|.||++. +..+||||+||
T Consensus 145 ~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl 223 (250)
T COG0411 145 RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVL 223 (250)
T ss_pred chhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEec
Confidence 65 4677776 9999999999999999999998778999999999995 99999999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
+.|+++++|+|+++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999998864
No 42
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=292.28 Aligned_cols=201 Identities=25% Similarity=0.463 Sum_probs=178.5
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|.++||.|+|. ++++++||||++++||+++++|||||||||.+.++.|+.+|++ |.|.++
T Consensus 3 ~~L~a~~l~K~y~---------------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~---G~i~ld 64 (243)
T COG1137 3 STLVAENLAKSYK---------------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLD 64 (243)
T ss_pred cEEEehhhhHhhC---------------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCC---ceEEEC
Confidence 3689999999993 4679999999999999999999999999999999999999975 999999
Q ss_pred CccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcc
Q 006897 135 CHQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDE 207 (627)
Q Consensus 135 g~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe 207 (627)
|.++.. ..+.|..|||+||++..|..+||+|||......+.....+.+.+++++++|++++|.+++++ ++|||
T Consensus 65 ~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGE 144 (243)
T COG1137 65 DEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGE 144 (243)
T ss_pred CcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccch
Confidence 999854 24566789999999999999999999998877654333345667779999999999988764 56999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
|+| |++|.||.+..+|-++++.|++ .|..|+++-|+.. |...+|||.+++++|++.++|+
T Consensus 145 RRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~ 222 (243)
T COG1137 145 RRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGS 222 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccHH-HHHhhhheEEEEecCeEEecCC
Confidence 998 9999999999999999999976 5999999999999 6899999999999999999999
Q ss_pred HHHHHH
Q 006897 270 LELLEE 275 (627)
Q Consensus 270 ~~~~~~ 275 (627)
++++.+
T Consensus 223 p~ei~~ 228 (243)
T COG1137 223 PEEIVN 228 (243)
T ss_pred HHHHhc
Confidence 998753
No 43
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-36 Score=321.89 Aligned_cols=198 Identities=27% Similarity=0.423 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~i~~l~~~~~---------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~---G~I~~~g 64 (369)
T PRK11000 3 SVTLRNVTKAYG---------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGE 64 (369)
T ss_pred EEEEEEEEEEeC---------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECC
Confidence 589999999993 2459999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++......++.+|||+|+..+++.+||+||+.|+...+ +.++++.+++++++++.+||++..++ ++|||+||
T Consensus 65 ~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRv 142 (369)
T PRK11000 65 KRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA--GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 142 (369)
T ss_pred EECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc--CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence 986432334567999999999999999999999986432 23455667889999999999876554 56999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++..+.+.|+++.++.|+|+|++|||++ ++.++||++++|++|+++..|+++++
T Consensus 143 aLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999998766899999999998 58899999999999999999999887
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 222 ~ 222 (369)
T PRK11000 222 Y 222 (369)
T ss_pred H
Confidence 4
No 44
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-37 Score=288.48 Aligned_cols=200 Identities=24% Similarity=0.411 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
|++++||+|+| +++.+|+|+|++|++|.+++|+|||||||||||.+++.+++.++ |+|+++|
T Consensus 1 MI~i~nv~K~y---------------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~---G~i~i~g 62 (252)
T COG4604 1 MITIENVSKSY---------------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDG 62 (252)
T ss_pred CeeehhhhHhh---------------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccC---ceEEEee
Confidence 57899999999 45679999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----CCcCCcccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----GSFVGDEEN 209 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~q 209 (627)
.++.+ .+++.++++.+-|+.++-..+||+|-+.|+......+...++.+..++++++.++|+++. ++++|||||
T Consensus 63 ~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQ 142 (252)
T COG4604 63 LELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQ 142 (252)
T ss_pred eecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhh
Confidence 99843 467888999999999988899999999998543334555678889999999999998765 456799999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| |+++||.+...++|+.|++++++.|+||+++.||.+. +..++|+|+-|++|+++..|+++
T Consensus 143 RAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~ 221 (252)
T COG4604 143 RAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPD 221 (252)
T ss_pred hhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHH
Confidence 9 9999999999999999999999999999999999996 78899999999999999999999
Q ss_pred HHH
Q 006897 272 LLE 274 (627)
Q Consensus 272 ~~~ 274 (627)
++.
T Consensus 222 eii 224 (252)
T COG4604 222 EII 224 (252)
T ss_pred Hhc
Confidence 874
No 45
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-36 Score=298.31 Aligned_cols=196 Identities=26% Similarity=0.448 Sum_probs=168.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|.
T Consensus 1 i~~~~~~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~ 62 (220)
T cd03265 1 IEVENLVKKYG---------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGH 62 (220)
T ss_pred CEEEEEEEEEC---------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 47899999993 2469999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
++.. ....++.++|++|++.+++.+||+||+.+....+ +...++.+++++++++.+||++..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~ 140 (220)
T cd03265 63 DVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY--GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRL 140 (220)
T ss_pred ecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHH
Confidence 7532 2345678999999999999999999999875432 2334456678999999999976554 456999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++++
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999998755899999999998 58889999999999999999887653
No 46
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-36 Score=316.53 Aligned_cols=202 Identities=25% Similarity=0.414 Sum_probs=173.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+ +..+++|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 mi~i~~l~~~y~~~-----------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~---G~I~~~g 66 (343)
T PRK11153 1 MIELKNISKVFPQG-----------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS---GRVLVDG 66 (343)
T ss_pred CEEEEeEEEEeCCC-----------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECC
Confidence 48999999999421 113569999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. . ...++.+|||||++.+++.+||+||+.++.... +.++++.+++++++++.+||++..+ +++||
T Consensus 67 ~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgG 144 (343)
T PRK11153 67 QDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA--GTPKAEIKARVTELLELVGLSDKADRYPAQLSGG 144 (343)
T ss_pred EECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHH
Confidence 88642 1 234678999999999999999999999876432 3345566778999999999987654 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 145 q~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g 223 (343)
T PRK11153 145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQG 223 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 9999 999999999999999999998766899999999998 588999999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 224 ~~~~~~ 229 (343)
T PRK11153 224 TVSEVF 229 (343)
T ss_pred CHHHHH
Confidence 988764
No 47
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.2e-35 Score=310.74 Aligned_cols=200 Identities=26% Similarity=0.376 Sum_probs=172.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 3 ~~i~~~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~ 64 (303)
T TIGR01288 3 VAIDLVGVSKSYG---------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVL 64 (303)
T ss_pred cEEEEEeEEEEeC---------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEC
Confidence 3799999999993 3459999999999999999999999999999999999998864 999999
Q ss_pred CccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 135 CHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 135 g~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
|+++.. ....++.+||++|++.+++.+||+||+.+..... +.+.++.+++++++++.++|.+..+ .++|||+|
T Consensus 65 g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~q 142 (303)
T TIGR01288 65 GEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF--GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKR 142 (303)
T ss_pred CEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHH
Confidence 988532 2345778999999999999999999998754332 2344555667889999999976554 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 143 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 143 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9 9999999999999999999976 5899999999998 588999999999999999999998
Q ss_pred HHHHH
Q 006897 272 LLEET 276 (627)
Q Consensus 272 ~~~~~ 276 (627)
++.+.
T Consensus 221 ~~~~~ 225 (303)
T TIGR01288 221 ALIDE 225 (303)
T ss_pred HHHhh
Confidence 87543
No 48
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=300.76 Aligned_cols=200 Identities=23% Similarity=0.389 Sum_probs=168.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 63 (239)
T cd03296 2 SIEVRNVSKRFG---------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS---GTILFGG 63 (239)
T ss_pred EEEEEeEEEEEC---------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 589999999993 2469999999999999999999999999999999999998864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
+++......++.++|++|++.+++.+||+||+.++...+.. ....++..++++++++.+||++..+ .++|||+|
T Consensus 64 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 143 (239)
T cd03296 64 EDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQ 143 (239)
T ss_pred EECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHH
Confidence 88533222356799999999999889999999987533211 0123344567889999999976544 46699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 144 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 222 (239)
T cd03296 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPD 222 (239)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHH
Confidence 8 999999999999999999998755899999999998 488999999999999999999987
Q ss_pred HHH
Q 006897 272 LLE 274 (627)
Q Consensus 272 ~~~ 274 (627)
++.
T Consensus 223 ~~~ 225 (239)
T cd03296 223 EVY 225 (239)
T ss_pred HHh
Confidence 663
No 49
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-35 Score=301.31 Aligned_cols=206 Identities=25% Similarity=0.416 Sum_probs=176.9
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-C-CCCccceEEEC
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR-D-QDFDPRSITVN 134 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~-~-~~~~~G~i~i~ 134 (627)
|+++||+..|.... +..++++||||++++||++||+|+|||||||+.+.|+|+++ + ....+|+|.++
T Consensus 2 L~v~nL~v~f~~~~-----------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~ 70 (316)
T COG0444 2 LEVKNLSVSFPTDA-----------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFD 70 (316)
T ss_pred ceEeeeEEEEecCC-----------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEEC
Confidence 78999999995431 34679999999999999999999999999999999999997 4 33456999999
Q ss_pred CccCCC--hh---hhc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------c
Q 006897 135 CHQIKK--PA---QLR-KICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-------V 199 (627)
Q Consensus 135 g~~~~~--~~---~~r-~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~ 199 (627)
|+++.+ .+ ++| +.|+||||++ .|.|.+||.+.+.-....+.....+++..+++.++|+.+||.+ .
T Consensus 71 g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y 150 (316)
T COG0444 71 GKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSY 150 (316)
T ss_pred CcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhC
Confidence 998743 22 333 5799999995 6889999999999887654321146678899999999999975 3
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++++||++|| ||++||...+.+|+++|++++++.|+|+|+||||+.. +.++||||+||..
T Consensus 151 PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMYa 229 (316)
T COG0444 151 PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYA 229 (316)
T ss_pred CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEEC
Confidence 45677999999 9999999999999999999999899999999999995 8999999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|+||+.|+.+++.
T Consensus 230 G~iVE~g~~~~i~ 242 (316)
T COG0444 230 GRIVEEGPVEEIF 242 (316)
T ss_pred cEEEEeCCHHHHh
Confidence 9999999998774
No 50
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-36 Score=296.76 Aligned_cols=191 Identities=27% Similarity=0.478 Sum_probs=163.2
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~ 62 (213)
T cd03259 1 LELKGLSKTYG---------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGR 62 (213)
T ss_pred CeeeeeEEEeC---------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCE
Confidence 47899999993 2459999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+|++||+.++.... +...++.+++++++++.+||++..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~ 140 (213)
T cd03259 63 DVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR--GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVA 140 (213)
T ss_pred EcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH
Confidence 86432334568999999998998899999999865322 2234455677899999999976554 466999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 141 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999997656899999999998 488999999999999998765
No 51
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.7e-35 Score=309.11 Aligned_cols=198 Identities=24% Similarity=0.447 Sum_probs=172.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|++++|+ ++.+|+|+||++++||++||+||||||||||+|+|+|+++|+. |+|.++|
T Consensus 2 ~l~~~~l~~~~~---------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~---G~i~i~g 63 (301)
T TIGR03522 2 SIRVSSLTKLYG---------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS---GSVQVCG 63 (301)
T ss_pred EEEEEEEEEEEC---------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 489999999993 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr 210 (627)
+++.. ....++.+||+||++.+++.+||.||+.+.+.++ +.+.++..++++++++.+||++..++ ++|||+||
T Consensus 64 ~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 141 (301)
T TIGR03522 64 EDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY--GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQR 141 (301)
T ss_pred EEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHH
Confidence 88643 3456788999999999999999999999876543 33445566789999999999876654 45999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+|||+.+++.+++.|++++ + ++|||++||+++ ++.++|||+++|++|++++.|+.++
T Consensus 142 v~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 142 VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999985 3 699999999998 5899999999999999999999998
Q ss_pred HHHH
Q 006897 273 LEET 276 (627)
Q Consensus 273 ~~~~ 276 (627)
+...
T Consensus 219 ~~~~ 222 (301)
T TIGR03522 219 LSAA 222 (301)
T ss_pred HHHh
Confidence 7653
No 52
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2e-35 Score=311.41 Aligned_cols=214 Identities=23% Similarity=0.348 Sum_probs=175.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
++|+++||+++|..+.... .+ ...++...+|+||||+|++||++||+|+||||||||+++|+|+++|++ |+|.++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~-~~-~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~---G~I~~~ 81 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQ-WF-WQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD---GEVAWL 81 (331)
T ss_pred ceEEEeCeEEEECCCCccc-cc-cccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---cEEEEC
Confidence 4799999999995321000 00 001123569999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--h---hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CC
Q 006897 135 CHQIKK--P---AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GS 202 (627)
Q Consensus 135 g~~~~~--~---~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~ 202 (627)
|+++.+ . ..+++.++||+|++ .++|.+||.||+.+.......+.++++.++++.++++.+||. +.. +.
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~ 161 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE 161 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence 998643 1 23567899999997 588899999999987543322245667778899999999994 333 45
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++.+++++|+++.++.|.|+|++|||++ .+.++|||+++|++|++
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHA 240 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 66999999 999999999999999999998767899999999998 48889999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 241 ve~g~~~~i~ 250 (331)
T PRK15079 241 VELGTYDEVY 250 (331)
T ss_pred EEEcCHHHHH
Confidence 9999988764
No 53
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=318.75 Aligned_cols=198 Identities=22% Similarity=0.377 Sum_probs=171.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|.+ |+|.++|
T Consensus 3 ~L~~~nls~~y~---------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~s---G~I~l~G 64 (402)
T PRK09536 3 MIDVSDLSVEFG---------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAG 64 (402)
T ss_pred eEEEeeEEEEEC---------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECC
Confidence 699999999993 3569999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHcCCccccCC----cCCcc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM--SHKEKEDRVESLMDELGLTHVAGS----FVGDE 207 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe 207 (627)
+++.+ ..++++++|||+|++.+++.+||+||+.++...+.... ..++.+++++++++.+|+.+..++ ++|||
T Consensus 65 ~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGe 144 (402)
T PRK09536 65 DDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGE 144 (402)
T ss_pred EEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence 88643 35677889999999999888999999998642211111 134456789999999999876654 56999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
||| ||+|||+.++.+++++|+++++ .|+|||++|||++ ++.++|||+++|++|++++.|+
T Consensus 145 rQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 999 9999999999999999999986 5899999999999 5889999999999999999999
Q ss_pred HHHH
Q 006897 270 LELL 273 (627)
Q Consensus 270 ~~~~ 273 (627)
++++
T Consensus 223 ~~ev 226 (402)
T PRK09536 223 PADV 226 (402)
T ss_pred HHHH
Confidence 9875
No 54
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-35 Score=297.76 Aligned_cols=202 Identities=27% Similarity=0.423 Sum_probs=170.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+++. +.+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~i~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 66 (233)
T cd03258 1 MIELKNVSKVFGDTG-----------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS---GSVLVDG 66 (233)
T ss_pred CeEEecceEEccCCC-----------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 478999999994210 11269999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. . ...++.++|++|++.+++.+|++||+.+....+ +...++..+++.++++.+||++..+ .++||
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 144 (233)
T cd03258 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA--GVPKAEIEERVLELLELVGLEDKADAYPAQLSGG 144 (233)
T ss_pred EEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHH
Confidence 88632 1 134678999999999999899999999875432 2334455677899999999976554 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 223 (233)
T cd03258 145 QKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEG 223 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEec
Confidence 9998 999999999999999999997756899999999998 588899999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 224 ~~~~~~ 229 (233)
T cd03258 224 TVEEVF 229 (233)
T ss_pred CHHHHh
Confidence 887653
No 55
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-36 Score=282.36 Aligned_cols=199 Identities=27% Similarity=0.441 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+.+|||++. ..+++|++||+++++||++||+||||||||||||.|+|.+.|++ |++.+||
T Consensus 1 mi~a~nls~~~---------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~---G~v~~~g 62 (259)
T COG4559 1 MIRAENLSYSL---------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GEVTLNG 62 (259)
T ss_pred CeeeeeeEEEe---------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC---CeEeeCC
Confidence 58999999998 34679999999999999999999999999999999999999864 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
.++. .+.++.++-+.+||+..+-...||.|-+.++..-...+....+..+.++++|...++.+++. +++|||+|
T Consensus 63 ~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQ 142 (259)
T COG4559 63 VPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQ 142 (259)
T ss_pred cChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHH
Confidence 9874 35677788899999987644469999999986432222223355667899999999987765 45699999
Q ss_pred C------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 210 R------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 210 r------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
| |||.||...+..++++.++++++ |..|++|.||++. ...+||||++|++||++
T Consensus 143 RVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNL-AA~YaDrivll~~Grv~ 220 (259)
T COG4559 143 RVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNL-AAQYADRIVLLHQGRVI 220 (259)
T ss_pred HHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchH-HHHhhheeeeeeCCeEe
Confidence 8 99999999999999999999986 7899999999996 78999999999999999
Q ss_pred eeCCHHHHH
Q 006897 266 HYGSLELLE 274 (627)
Q Consensus 266 ~~G~~~~~~ 274 (627)
..|+++++.
T Consensus 221 a~g~p~~vl 229 (259)
T COG4559 221 ASGSPQDVL 229 (259)
T ss_pred ecCCHHHhc
Confidence 999998874
No 56
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.9e-35 Score=293.59 Aligned_cols=191 Identities=21% Similarity=0.397 Sum_probs=163.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 i~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~v~~~g~ 62 (213)
T cd03301 1 VELENVTKRFG---------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS---GRIYIGGR 62 (213)
T ss_pred CEEEeeEEEEC---------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 47899999993 2459999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+|++||+.++...+ +...++.+++++++++.+|+++..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~ 140 (213)
T cd03301 63 DVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR--KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVA 140 (213)
T ss_pred ECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHH
Confidence 86432223467999999998988899999999875432 2344556678899999999976554 456999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|++++.|
T Consensus 141 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 141 LGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999998756899999999998 588899999999999999875
No 57
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-35 Score=303.32 Aligned_cols=204 Identities=22% Similarity=0.387 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||++.|+.+. ...+.+|+||||+|++||++||+||||||||||+++|+|+++|+. |+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~----------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~---G~i~~~g 68 (287)
T PRK13637 2 SIKIENLTHIYMEGT----------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS---GKIIIDG 68 (287)
T ss_pred EEEEEEEEEECCCCC----------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEECC
Confidence 489999999994211 012469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC----hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--cccC----CcC
Q 006897 136 HQIKK----PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--HVAG----SFV 204 (627)
Q Consensus 136 ~~~~~----~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~----~~~ 204 (627)
+++.. ....++.+|||||++. .+...||+||+.++.... +.++++..++++++++.+||. +..+ .++
T Consensus 69 ~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LS 146 (287)
T PRK13637 69 VDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL--GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELS 146 (287)
T ss_pred EECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC--CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCC
Confidence 88643 1356788999999863 233469999999875422 345666778899999999996 4444 456
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|||+|| ||+|||+.++.++.++|++++++.|+|||++|||++ ++.++|||+++|++|++++
T Consensus 147 gGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~ 225 (287)
T PRK13637 147 GGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCEL 225 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999 999999999999999999998766899999999998 4788999999999999999
Q ss_pred eCCHHHHHH
Q 006897 267 YGSLELLEE 275 (627)
Q Consensus 267 ~G~~~~~~~ 275 (627)
.|+++++.+
T Consensus 226 ~g~~~~~~~ 234 (287)
T PRK13637 226 QGTPREVFK 234 (287)
T ss_pred ECCHHHHHh
Confidence 999988743
No 58
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-35 Score=304.42 Aligned_cols=216 Identities=22% Similarity=0.389 Sum_probs=176.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+. ...+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 mi~~~~v~~~y~~~~----------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 67 (288)
T PRK13643 1 MIKFEKVNYTYQPNS----------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE---GKVTVGD 67 (288)
T ss_pred CEEEEEEEEEeCCCC----------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECC
Confidence 489999999995221 012359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cccC----C
Q 006897 136 HQIKK------PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVAG----S 202 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~----~ 202 (627)
.++.. ...+++.+|||+|++ .+++ .||.||+.|+.... +.++++.++++.++++.+||. +..+ .
T Consensus 68 ~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 144 (288)
T PRK13643 68 IVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF--GIPKEKAEKIAAEKLEMVGLADEFWEKSPFE 144 (288)
T ss_pred EECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCChhhccCCccc
Confidence 88631 234678899999986 5665 59999999876432 345566778899999999995 3443 4
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||||++|++|++
T Consensus 145 LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~-~~~~~~dri~~l~~G~i 222 (288)
T PRK13643 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMD-DVADYADYVYLLEKGHI 222 (288)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 56999998 9999999999999999999976 4899999999998 47889999999999999
Q ss_pred EeeCCHHHHH---HHHHhcCCCCCCCCC
Q 006897 265 VHYGSLELLE---ETINNLGYQIPTQLN 289 (627)
Q Consensus 265 v~~G~~~~~~---~~~~~~g~~~p~~~~ 289 (627)
++.|+++++. +.+...++.+|....
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 250 (288)
T PRK13643 223 ISCGTPSDVFQEVDFLKAHELGVPKATH 250 (288)
T ss_pred EEECCHHHHHcCHHHHHHcCCCCChHHH
Confidence 9999998874 234456666665433
No 59
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.9e-35 Score=308.01 Aligned_cols=208 Identities=23% Similarity=0.345 Sum_probs=174.2
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||++.|..+ ++...+|+||||+|++||++||+|+||||||||+++|+|+++|....+|+|.+
T Consensus 10 ~~~L~i~~l~~~~~~~-----------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~ 78 (330)
T PRK09473 10 DALLDVKDLRVTFSTP-----------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATF 78 (330)
T ss_pred CceEEEeCeEEEEecC-----------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEE
Confidence 4479999999999532 12356999999999999999999999999999999999999885223599999
Q ss_pred CCccCCC--hhh---hc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------
Q 006897 134 NCHQIKK--PAQ---LR-KICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------- 198 (627)
Q Consensus 134 ~g~~~~~--~~~---~r-~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------- 198 (627)
+|+++.. ..+ +| +.|+||||++ .++|.+|+.+++......+ .+.++++..+++.++|+.+||.+
T Consensus 79 ~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~-~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~ 157 (330)
T PRK09473 79 NGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH-KGMSKAEAFEESVRMLDAVKMPEARKRMKM 157 (330)
T ss_pred CCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCChHHHhcC
Confidence 9998743 222 33 4799999997 6889999999998765432 12355666788999999999964
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..+.++|||+|| ||+|||+.++.+++++|++++++.|.|+|++|||++ .+.++|||+++|+
T Consensus 158 ~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~ 236 (330)
T PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY 236 (330)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 234567999999 999999999999999999998777999999999998 4788999999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 237 ~G~ive~g~~~~i~ 250 (330)
T PRK09473 237 AGRTMEYGNARDVF 250 (330)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999998874
No 60
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.2e-35 Score=300.87 Aligned_cols=200 Identities=22% Similarity=0.339 Sum_probs=169.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++
T Consensus 6 ~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~ 67 (269)
T PRK11831 6 NLVDMRGVSFTRG---------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFD 67 (269)
T ss_pred ceEEEeCeEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEC
Confidence 4799999999993 2459999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 135 CHQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 135 g~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
|+++.. . ...++.++|++|++.+++.+||.||+.++.... ...+.++.++++.++++.+||.+..+ .++|
T Consensus 68 g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 146 (269)
T PRK11831 68 GENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREH-TQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSG 146 (269)
T ss_pred CEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCH
Confidence 987632 1 124677999999999999899999999864321 11234445667889999999976544 4669
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|++++.
T Consensus 147 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 147 GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEe
Confidence 99998 999999999999999999997656899999999998 58899999999999999999
Q ss_pred CCHHHHH
Q 006897 268 GSLELLE 274 (627)
Q Consensus 268 G~~~~~~ 274 (627)
|+++++.
T Consensus 226 g~~~~~~ 232 (269)
T PRK11831 226 GSAQALQ 232 (269)
T ss_pred CCHHHHh
Confidence 9987663
No 61
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.8e-35 Score=312.60 Aligned_cols=186 Identities=22% Similarity=0.386 Sum_probs=165.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhh----cccEEEEccCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQL----RKICGFVAQEDN 156 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~----r~~ig~v~Q~~~ 156 (627)
.+.+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.. ..++ ++.+|||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~---G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA---GQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 4569999999999999999999999999999999999999964 999999998743 3334 678999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC------------------CCCC
Q 006897 157 LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR------------------GISG 214 (627)
Q Consensus 157 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr------------------Ptsg 214 (627)
++|.+||+||+.++.... +.++++..+++.++++.+||++..++ ++|||+|| |+++
T Consensus 82 l~~~~TV~eNi~~~~~~~--~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL--GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999999999986542 34566778899999999999876655 45999999 9999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 215 LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 215 LD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
||+.++..+.+.|++++++.|+|||++|||++ ++.++||||++|++|+++..|+++++.
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999998767899999999998 588999999999999999999998874
No 62
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-35 Score=296.82 Aligned_cols=201 Identities=32% Similarity=0.469 Sum_probs=167.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|++ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 63 (241)
T cd03256 1 IEVENLSKTYPN--------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---GSVLIDGT 63 (241)
T ss_pred CEEeeEEEecCC--------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCE
Confidence 478999999931 1469999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHcCCccccC----
Q 006897 137 QIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR------LKGMSHKEKEDRVESLMDELGLTHVAG---- 201 (627)
Q Consensus 137 ~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~------~~~~~~~~~~~~v~~~l~~lgL~~~~~---- 201 (627)
++.. ....++.++|++|++.+++.+||+||+.++.... ..+...++..+++.++++.+||.+..+
T Consensus 64 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (241)
T cd03256 64 DINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD 143 (241)
T ss_pred eccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc
Confidence 8632 2345678999999999999899999998753210 001112344567889999999976544
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|+
T Consensus 144 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~ 222 (241)
T cd03256 144 QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGR 222 (241)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 466999998 999999999999999999998666899999999998 4888999999999999
Q ss_pred EEeeCCHHHHHH
Q 006897 264 VVHYGSLELLEE 275 (627)
Q Consensus 264 iv~~G~~~~~~~ 275 (627)
+++.|+++++.+
T Consensus 223 i~~~~~~~~~~~ 234 (241)
T cd03256 223 IVFDGPPAELTD 234 (241)
T ss_pred EEeecCHHHhhH
Confidence 999999887643
No 63
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-35 Score=301.10 Aligned_cols=200 Identities=24% Similarity=0.414 Sum_probs=170.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.. +.+.+|+|+||+|++||++||+||||||||||+++|+|+++|+. |+|.++|
T Consensus 4 ~l~~~~l~~~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 68 (279)
T PRK13650 4 IIEVKNLTFKYKED------------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES---GQIIIDG 68 (279)
T ss_pred eEEEEeEEEEcCCC------------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 68999999999421 12359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 136 HQIKK--PAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
+++.. ...+++.+|||+|++ .+++.+||+||+.++... .+.++++..++++++++.+||++..+ .++|||+
T Consensus 69 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~ 146 (279)
T PRK13650 69 DLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN--KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQK 146 (279)
T ss_pred EECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHh--CCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHH
Confidence 98632 345677899999997 366678999999987532 23455666788999999999987654 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+++.|++++++.|+|||++||+++ ++ ..|||+++|++|+++..|++
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~ 224 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTP 224 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCH
Confidence 98 999999999999999999998766899999999998 46 58999999999999999999
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 225 ~~~~ 228 (279)
T PRK13650 225 RELF 228 (279)
T ss_pred HHHH
Confidence 8764
No 64
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.1e-35 Score=294.63 Aligned_cols=198 Identities=28% Similarity=0.459 Sum_probs=166.7
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 62 (236)
T cd03219 1 LEVRGLTKRFG---------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGE 62 (236)
T ss_pred CeeeeeEEEEC---------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCE
Confidence 46899999993 2359999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC--------CCHHHHHHHHHHHHHHcCCccccC----
Q 006897 137 QIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG--------MSHKEKEDRVESLMDELGLTHVAG---- 201 (627)
Q Consensus 137 ~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~--------~~~~~~~~~v~~~l~~lgL~~~~~---- 201 (627)
++.. ... .++.++|++|++.+++.+||+||+.+........ ...++..++++++++.+||++..+
T Consensus 63 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (236)
T cd03219 63 DITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG 142 (236)
T ss_pred ECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh
Confidence 8632 122 3467999999999999999999999875432110 013445667899999999976554
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|+
T Consensus 143 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 143 ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVLDQGR 220 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEeCCE
Confidence 456999998 9999999999999999999976 5899999999998 5889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 221 i~~~~~~~~~~ 231 (236)
T cd03219 221 VIAEGTPDEVR 231 (236)
T ss_pred EEeecCHHHhc
Confidence 99999987663
No 65
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=304.30 Aligned_cols=215 Identities=21% Similarity=0.378 Sum_probs=175.0
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||++.|+... ...+.+|+||||+|++||++||+||||||||||+++|+|+++|++ |+|.+
T Consensus 19 ~~~l~~~nl~~~y~~~~----------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~---G~I~i 85 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQ----------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY---GTIQV 85 (320)
T ss_pred CceEEEEeEEEEeCCCC----------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEE
Confidence 45799999999995321 012459999999999999999999999999999999999999864 99999
Q ss_pred CCccCCC------------------hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 006897 134 NCHQIKK------------------PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDE 193 (627)
Q Consensus 134 ~g~~~~~------------------~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~ 193 (627)
+|.++.+ ...+++.+|||+|++ .+++ .||+||+.++.... +.+.++..+++.++++.
T Consensus 86 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~ 162 (320)
T PRK13631 86 GDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL--GVKKSEAKKLAKFYLNK 162 (320)
T ss_pred CCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc--CCCHHHHHHHHHHHHHH
Confidence 9977522 235678899999986 5666 49999999875321 23455666789999999
Q ss_pred cCCc-cccC----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHH
Q 006897 194 LGLT-HVAG----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRIL 250 (627)
Q Consensus 194 lgL~-~~~~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~ 250 (627)
+||+ +..+ .++|||+|| ||+|||+.++..+++.|+++++ +|+|||++|||++ ++.
T Consensus 163 ~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 163 MGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTME-HVL 240 (320)
T ss_pred cCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHH
Confidence 9996 4443 466999999 9999999999999999999975 4899999999998 478
Q ss_pred HHhhhheeecCCeEEeeCCHHHHH---HHHHhcCCCCCC
Q 006897 251 QYISKFLILSRGSVVHYGSLELLE---ETINNLGYQIPT 286 (627)
Q Consensus 251 ~~~D~i~vL~~G~iv~~G~~~~~~---~~~~~~g~~~p~ 286 (627)
++|||+++|++|++++.|+++++. +.+...+...|.
T Consensus 241 ~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 241 EVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 899999999999999999998764 233445555443
No 66
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4e-35 Score=292.05 Aligned_cols=189 Identities=25% Similarity=0.425 Sum_probs=160.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+. +.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 64 (216)
T TIGR00960 1 MIRFEQVSKAYPG-------------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTR---GKIRFNG 64 (216)
T ss_pred CeEEEEEEEEecC-------------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 4789999999942 12359999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. . ..+++.++|++|++.+++.+||.||+.++...+ +...++.++++.++++.+||++..+ .++||
T Consensus 65 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 142 (216)
T TIGR00960 65 QDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII--GVPPRDANERVSAALEKVGLEGKAHALPMQLSGG 142 (216)
T ss_pred EehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHH
Confidence 87632 1 235678999999999999899999999875432 2234455678999999999976554 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
|+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|++
T Consensus 143 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 143 EQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999 9999999999999999999975 4899999999998 47889999999999975
No 67
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.7e-35 Score=306.06 Aligned_cols=187 Identities=22% Similarity=0.443 Sum_probs=163.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC-hhhhcccEEEEccCCCCCCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK-PAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~-~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++ |+|.++|+++.. ....++.+||+||++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 469999999999999999999999999999999999999864 999999988633 3456778999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC------------------CCCCCCHHHH
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR------------------GISGLDSTSA 220 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr------------------PtsgLD~~~~ 220 (627)
|+||+.+.+..+ +.+.++.+++++++++.+||.+..++ ++|||+|| ||+|||+.++
T Consensus 83 v~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 83 GRENLEMMGRLY--GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 999999876443 33445566789999999999766554 56999999 9999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHH
Q 006897 221 LQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETI 277 (627)
Q Consensus 221 ~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~ 277 (627)
..+++.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+++++.+..
T Consensus 161 ~~l~~~l~~~~~-~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 215 (302)
T TIGR01188 161 RAIWDYIRALKE-EGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRRL 215 (302)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHhc
Confidence 999999999976 4899999999998 588999999999999999999998876543
No 68
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-35 Score=294.68 Aligned_cols=198 Identities=21% Similarity=0.430 Sum_probs=168.8
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
++++||+++|++ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~~--------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 63 (242)
T cd03295 1 IEFENVTKRYGG--------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS---GEIFIDGE 63 (242)
T ss_pred CEEEEEEEEeCC--------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCe
Confidence 468999999941 1459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--ccC----CcCCccc
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--VAG----SFVGDEE 208 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~----~~~gGe~ 208 (627)
++.. ....++.++|++|++.+++.+||+||+.+....+ +...++..+++.++++.+||.+ ..+ .++|||+
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~ 141 (242)
T cd03295 64 DIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQ 141 (242)
T ss_pred EcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHH
Confidence 8632 3355678999999999999899999999875432 2334555678899999999974 444 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|++
T Consensus 142 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 220 (242)
T cd03295 142 QRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTP 220 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCH
Confidence 98 999999999999999999997655899999999998 58899999999999999999988
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 221 ~~~~ 224 (242)
T cd03295 221 DEIL 224 (242)
T ss_pred HHHH
Confidence 7663
No 69
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=301.27 Aligned_cols=202 Identities=23% Similarity=0.379 Sum_probs=169.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+... ...+++|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~----------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 68 (290)
T PRK13634 2 DITFQKVEHRYQYKT----------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS---GTVTIGE 68 (290)
T ss_pred EEEEEEEEEEECCCC----------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECC
Confidence 389999999995221 012469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cccC----C
Q 006897 136 HQIKK------PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVAG----S 202 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~----~ 202 (627)
+++.. ....++.+|||||++ .+++ .||.||+.|+.... +.+.++.+++++++++.+||. +..+ .
T Consensus 69 ~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 145 (290)
T PRK13634 69 RVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF--GVSEEDAKQKAREMIELVGLPEELLARSPFE 145 (290)
T ss_pred EECccccccchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCChhhhhCCccc
Confidence 98631 234667899999986 4554 69999999875322 334556667899999999996 4444 4
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.++|++++++.|.|||++|||++ ++.++|||+++|++|++
T Consensus 146 LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i 224 (290)
T PRK13634 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTV 224 (290)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 56999998 999999999999999999998766899999999998 58899999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 225 ~~~g~~~~~~ 234 (290)
T PRK13634 225 FLQGTPREIF 234 (290)
T ss_pred EEECCHHHHh
Confidence 9999988764
No 70
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-35 Score=291.23 Aligned_cols=194 Identities=29% Similarity=0.453 Sum_probs=164.2
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+.. ...+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~~~-----------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 66 (220)
T cd03293 1 LEVRNVSKTYGGG-----------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGE 66 (220)
T ss_pred CeEEEEEEEcCCC-----------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 4789999999421 011469999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----CCcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----GSFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~qr-- 210 (627)
++. ..++.++|++|++.+++.+|++||+.++...+ +.+.++..++++++++.+||++.. ..++|||+||
T Consensus 67 ~~~---~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~ 141 (220)
T cd03293 67 PVT---GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ--GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVA 141 (220)
T ss_pred ECc---cccCcEEEEecccccccCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH
Confidence 853 24678999999999998899999999875432 233445567889999999997654 4566999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec--CCeEEeeCCH
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS--RGSVVHYGSL 270 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~ 270 (627)
||+|||+.++..+.+.|+++.++.|+|||++||+++ ++.++||++++|+ +|++++.++.
T Consensus 142 la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 142 LARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999997656899999999998 4889999999999 7999988765
No 71
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=298.56 Aligned_cols=197 Identities=22% Similarity=0.356 Sum_probs=167.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+. .+.+|+|+||++++||++||+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~~~--------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 66 (274)
T PRK13647 4 IIEVEDLHFRYKD--------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR---GRVKVMG 66 (274)
T ss_pred eEEEEEEEEEeCC--------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECC
Confidence 6999999999941 2359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
+++.. ....++.+||++|++. .++..||.||+.++... .+.++++.++++.++++.+||.+..+ .++|||+
T Consensus 67 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~ 144 (274)
T PRK13647 67 REVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVN--MGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQK 144 (274)
T ss_pred EECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHH--cCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHH
Confidence 88632 2455678999999963 34457999999987532 23344556678999999999976554 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++.++.++|++++++ |+|||++||+++ ++.++|||+++|++|++++.|++
T Consensus 145 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 222 (274)
T PRK13647 145 KRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDK 222 (274)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 98 99999999999999999999764 899999999998 47889999999999999999998
Q ss_pred HHH
Q 006897 271 ELL 273 (627)
Q Consensus 271 ~~~ 273 (627)
+++
T Consensus 223 ~~~ 225 (274)
T PRK13647 223 SLL 225 (274)
T ss_pred HHh
Confidence 765
No 72
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=8.6e-35 Score=292.79 Aligned_cols=196 Identities=26% Similarity=0.475 Sum_probs=166.8
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~ 62 (232)
T cd03218 1 LRAENLSKRYG---------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS---GKILLDGQ 62 (232)
T ss_pred CeEEEEEEEeC---------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCE
Confidence 47899999993 2459999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 137 QIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 137 ~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
++.. ... .++.++|++|++.+++.+||+||+.+....+ +...++..++++++++.+|+++..+ .++|||+|
T Consensus 63 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 140 (232)
T cd03218 63 DITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR--GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERR 140 (232)
T ss_pred ecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 7532 122 3467999999999999999999999865332 2234455667899999999976554 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+.+
T Consensus 141 rl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 218 (232)
T cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPE 218 (232)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHH
Confidence 8 9999999999999999999976 4899999999998 589999999999999999999887
Q ss_pred HHH
Q 006897 272 LLE 274 (627)
Q Consensus 272 ~~~ 274 (627)
++.
T Consensus 219 ~~~ 221 (232)
T cd03218 219 EIA 221 (232)
T ss_pred Hhh
Confidence 653
No 73
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=7.2e-35 Score=290.58 Aligned_cols=195 Identities=26% Similarity=0.455 Sum_probs=165.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+.+. ...++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~v~~~~~~~~-----------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 66 (218)
T cd03266 1 MITADALTKRFRDVK-----------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDG 66 (218)
T ss_pred CeEEEEEEEecCCCC-----------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECC
Confidence 478999999994210 11269999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
+++.. ...+++.++|++|++.+++.+||+||+.+....+ +.+.++..++++++++.+||++..+ .++|||+||
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 144 (218)
T cd03266 67 FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY--GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQK 144 (218)
T ss_pred EEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHH
Confidence 88632 3456778999999999999899999998865432 2344556778999999999976554 466999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 145 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999975 4899999999998 588999999999999998754
No 74
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=302.47 Aligned_cols=201 Identities=21% Similarity=0.411 Sum_probs=168.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+.+. .....+|+|+||+|++||++||+||||||||||+++|+|+++|+. |+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~----------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g 68 (305)
T PRK13651 2 QIKVKNIVKIFNKKL----------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT---GTIEWIF 68 (305)
T ss_pred EEEEEEEEEEECCCC----------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEEec
Confidence 489999999995321 012359999999999999999999999999999999999999864 9999998
Q ss_pred ccCC--------------------------ChhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006897 136 HQIK--------------------------KPAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRV 187 (627)
Q Consensus 136 ~~~~--------------------------~~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v 187 (627)
++.. .....++.+|||||++ .++ ..||+||+.|+... .+.++++.++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~--~~~~~~~~~~~~ 145 (305)
T PRK13651 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVS--MGVSKEEAKKRA 145 (305)
T ss_pred eecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHH--cCCCHHHHHHHH
Confidence 6531 1234577899999985 445 46999999987543 234566777889
Q ss_pred HHHHHHcCCc-cccC----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccC
Q 006897 188 ESLMDELGLT-HVAG----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQ 244 (627)
Q Consensus 188 ~~~l~~lgL~-~~~~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~ 244 (627)
.++++.+||+ +..+ .++|||+|| ||+|||+.++..+++.|+++++ .|+|||++|||
T Consensus 146 ~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd 224 (305)
T PRK13651 146 AKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHD 224 (305)
T ss_pred HHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeC
Confidence 9999999996 4444 456999999 9999999999999999999975 59999999999
Q ss_pred ccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 245 PSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 245 ~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
++ ++.++|||+++|++|++++.|+++++.
T Consensus 225 ~~-~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 98 488999999999999999999998874
No 75
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.6e-35 Score=296.82 Aligned_cols=200 Identities=31% Similarity=0.437 Sum_probs=166.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~~--------------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 63 (243)
T TIGR02315 1 MLEVENLSKVYPN--------------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSS---GSILLEG 63 (243)
T ss_pred CeEEEeeeeecCC--------------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---cEEEECC
Confidence 4789999999931 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHcCCccccC---
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFR------LKGMSHKEKEDRVESLMDELGLTHVAG--- 201 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~------~~~~~~~~~~~~v~~~l~~lgL~~~~~--- 201 (627)
+++.. . ..+++.+||++|++.+++.+||+||+.++.... ..+...++.++++.++++.+||.+..+
T Consensus 64 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (243)
T TIGR02315 64 TDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA 143 (243)
T ss_pred EEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc
Confidence 87532 1 235678999999999999899999998753110 001112344577899999999976544
Q ss_pred -CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 202 -SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 202 -~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
.++|||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G 222 (243)
T TIGR02315 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAG 222 (243)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECC
Confidence 466999998 999999999999999999997656899999999998 478899999999999
Q ss_pred eEEeeCCHHHH
Q 006897 263 SVVHYGSLELL 273 (627)
Q Consensus 263 ~iv~~G~~~~~ 273 (627)
++++.|+++++
T Consensus 223 ~i~~~~~~~~~ 233 (243)
T TIGR02315 223 EIVFDGAPSEL 233 (243)
T ss_pred EEEecCCHHHh
Confidence 99999998765
No 76
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-34 Score=293.50 Aligned_cols=198 Identities=25% Similarity=0.451 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~---------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 62 (240)
T PRK09493 1 MIEFKNVSKHFG---------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS---GDLIVDG 62 (240)
T ss_pred CEEEEeEEEEEC---------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 478999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++.. ....++.++|++|++.+++.+||+||+.++... ..+...++.++++.++++.+||++..+ .++|||
T Consensus 63 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 141 (240)
T PRK09493 63 LKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR-VRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQ 141 (240)
T ss_pred EECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHH-hcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHH
Confidence 88642 134567899999999999889999999886421 112334556677899999999976544 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.++||++++|++|++++.|+
T Consensus 142 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 219 (240)
T PRK09493 142 QQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGD 219 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCC
Confidence 998 9999999999999999999975 4899999999998 5788999999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 220 ~~~~~ 224 (240)
T PRK09493 220 PQVLI 224 (240)
T ss_pred HHHHh
Confidence 87653
No 77
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=304.61 Aligned_cols=206 Identities=22% Similarity=0.365 Sum_probs=171.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CccceEEEC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD-FDPRSITVN 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~-~~~G~i~i~ 134 (627)
+|+++||++.|..+ .+..++|+||||+|++||++||+||||||||||+++|+|++++.. .+.|+|.++
T Consensus 3 ~L~v~~l~~~~~~~-----------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~ 71 (326)
T PRK11022 3 LLNVDKLSVHFGDE-----------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFN 71 (326)
T ss_pred eEEEeCeEEEECCC-----------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEEC
Confidence 68999999999532 122469999999999999999999999999999999999997521 245999999
Q ss_pred CccCCC--hhh---h-cccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------c
Q 006897 135 CHQIKK--PAQ---L-RKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-------V 199 (627)
Q Consensus 135 g~~~~~--~~~---~-r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~ 199 (627)
|+++.. .++ + ++.++||||++ .+.|.+|+.+++....... .+..+++.++++.++|+.+||.+ .
T Consensus 72 G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~-~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~ 150 (326)
T PRK11022 72 GQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH-QGGNKKTRRQRAIDLLNQVGIPDPASRLDVY 150 (326)
T ss_pred CEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 998643 222 2 24799999997 5788999999988765432 12345667788999999999964 2
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++++|||+|| ||+|||+.++.+++++|++++++.|.|+|++|||++ .+.++||||++|++
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~ 229 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA 229 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 35677999999 999999999999999999998777999999999998 47889999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 230 G~ive~g~~~~~~ 242 (326)
T PRK11022 230 GQVVETGKAHDIF 242 (326)
T ss_pred CEEEEECCHHHHh
Confidence 9999999998775
No 78
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-35 Score=281.61 Aligned_cols=199 Identities=26% Similarity=0.400 Sum_probs=169.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+..| +..++|++|||++++||+++|+||||||||||||+|+|+.++.+ |+|.++
T Consensus 2 ~mL~v~~l~~~Y---------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~---G~I~~~ 63 (237)
T COG0410 2 PMLEVENLSAGY---------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFD 63 (237)
T ss_pred CceeEEeEeecc---------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEEC
Confidence 379999999999 34679999999999999999999999999999999999999864 999999
Q ss_pred CccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-Cc----cccCCcCCc
Q 006897 135 CHQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG-LT----HVAGSFVGD 206 (627)
Q Consensus 135 g~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~----~~~~~~~gG 206 (627)
|+++.. .+..|+.++||||...+||.|||+|||..++..+.. ++..+..++++.+.+- |. ..+.+++||
T Consensus 64 G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~---~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGG 140 (237)
T COG0410 64 GEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD---KEAQERDLEEVYELFPRLKERRNQRAGTLSGG 140 (237)
T ss_pred CeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc---cccccccHHHHHHHChhHHHHhcCcccCCChH
Confidence 999853 345678899999999999999999999998643311 1122222666666652 33 455677899
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|||- |+.||-|.-.++|.+.+++++++.|.||+++.++... +.+++||.++|.+|+++++|
T Consensus 141 EQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~Griv~~G 219 (237)
T COG0410 141 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLENGRIVLSG 219 (237)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeCCEEEEec
Confidence 9986 9999999999999999999998778999999999985 88999999999999999999
Q ss_pred CHHHHHH
Q 006897 269 SLELLEE 275 (627)
Q Consensus 269 ~~~~~~~ 275 (627)
+.+++..
T Consensus 220 ~~~eL~~ 226 (237)
T COG0410 220 TAAELLA 226 (237)
T ss_pred CHHHHhc
Confidence 9998864
No 79
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5e-35 Score=293.59 Aligned_cols=193 Identities=25% Similarity=0.393 Sum_probs=162.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCccceE
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV-----RDQDFDPRSI 131 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~-----~~~~~~~G~i 131 (627)
|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|++ +|.+ |+|
T Consensus 1 i~~~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~---G~i 62 (227)
T cd03260 1 IELRDLNVYYG---------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE---GEV 62 (227)
T ss_pred CEEEEEEEEcC---------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCC---eEE
Confidence 47899999993 235999999999999999999999999999999999999 7653 999
Q ss_pred EECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc------C
Q 006897 132 TVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------G 201 (627)
Q Consensus 132 ~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------~ 201 (627)
.++|+++.. ....++.+||++|++.++ .+||+||+.++...+. .....+.++++.++++.+||.+.. .
T Consensus 63 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 140 (227)
T cd03260 63 LLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG-IKLKEELDERVEEALRKAALWDEVKDRLHAL 140 (227)
T ss_pred EECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC-CCcHHHHHHHHHHHHHHcCCChHHhccCCcc
Confidence 999988632 234567899999998888 7899999998754321 112233567789999999997542 5
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|++++++ +|||++|||++ ++.++||++++|++|+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~-~~~~~~d~i~~l~~G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQ-QAARVADRTAFLLNGR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHH-HHHHhCCEEEEEeCCE
Confidence 567999998 99999999999999999999753 89999999998 5888999999999999
Q ss_pred EEeeCCHHH
Q 006897 264 VVHYGSLEL 272 (627)
Q Consensus 264 iv~~G~~~~ 272 (627)
+++.|++++
T Consensus 218 i~~~g~~~~ 226 (227)
T cd03260 218 LVEFGPTEQ 226 (227)
T ss_pred EEEecCccc
Confidence 999998764
No 80
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=9.5e-35 Score=290.08 Aligned_cols=196 Identities=28% Similarity=0.457 Sum_probs=166.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+. +.+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~~-------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 64 (220)
T cd03263 1 LQIRNLTKTYKK-------------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGY 64 (220)
T ss_pred CEEEeeEEEeCC-------------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCE
Confidence 478999999942 11469999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
++.. ...+++.++|++|++.+++.+|++||+.+....+ +.+.++.+++++++++.+||.+..+ .++|||+||
T Consensus 65 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 142 (220)
T cd03263 65 SIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK--GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKL 142 (220)
T ss_pred ecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHH
Confidence 8632 2456678999999999998899999999865432 2234455677899999999976544 466999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|++++.|+++++
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999864 589999999998 47889999999999999999988754
No 81
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=311.01 Aligned_cols=212 Identities=23% Similarity=0.370 Sum_probs=174.8
Q ss_pred eEEEEeEEEEEccCccccc----------ccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 006897 56 KVTVRNLSYAIQPNTSILS----------HLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD 125 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~----------~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~ 125 (627)
+|+++||++.|+.+..... ... +..+...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQIL-EKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHH-hhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 6999999999975431000 000 11123458999999999999999999999999999999999999864
Q ss_pred CccceEEECCccCCC--hhh----hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc
Q 006897 126 FDPRSITVNCHQIKK--PAQ----LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199 (627)
Q Consensus 126 ~~~G~i~i~g~~~~~--~~~----~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 199 (627)
|+|.++|+++.. ... .++.+|||+|++.+++.+||+||+.++...+ +.+.++.++++.++++.+||++.
T Consensus 83 ---G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~--~~~~~~~~~~~~e~L~~~gL~~~ 157 (400)
T PRK10070 83 ---GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA--GINAEERREKALDALRQVGLENY 157 (400)
T ss_pred ---CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChh
Confidence 999999998642 222 2357999999999999999999999976432 33455666789999999999876
Q ss_pred cC----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 200 AG----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 200 ~~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
.+ .++|||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||+++
T Consensus 158 ~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~ 236 (400)
T PRK10070 158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIA 236 (400)
T ss_pred hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEE
Confidence 55 456999999 999999999999999999997666899999999998 5889999999
Q ss_pred eecCCeEEeeCCHHHHH
Q 006897 258 ILSRGSVVHYGSLELLE 274 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~ 274 (627)
+|++|+++..|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999988764
No 82
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-35 Score=294.58 Aligned_cols=213 Identities=25% Similarity=0.382 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEccCccccccc---------ccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 006897 56 KVTVRNLSYAIQPNTSILSHL---------LHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF 126 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~---------~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~ 126 (627)
.|+++||++-|..+....-.. ...+.+...-++|+||++++|||+.|+|-||||||||+|+|.++++|+.
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~- 82 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR- 82 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC-
Confidence 589999999996543211000 0011233456899999999999999999999999999999999999975
Q ss_pred ccceEEECCccCCC--h---hhhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc
Q 006897 127 DPRSITVNCHQIKK--P---AQLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA 200 (627)
Q Consensus 127 ~~G~i~i~g~~~~~--~---~~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 200 (627)
|+|.++|+++.. . .++| +++++|||+..|+|+.||.||..|+..+ .+.+++++++++.++|+.+||+...
T Consensus 83 --G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev--~Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 83 --GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEV--QGVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred --ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceee--cCCCHHHHHHHHHHHHHHcCchhhh
Confidence 999999999843 2 3344 5799999999999999999999999754 5788999999999999999998766
Q ss_pred C----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 201 G----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 201 ~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
+ +++||+||| |+|+|||--+.++-+.|.++.++.++||+++|||++ |+.++.|||.+
T Consensus 159 ~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIai 237 (386)
T COG4175 159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAI 237 (386)
T ss_pred hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEE
Confidence 5 556999999 899999999999999999999999999999999999 69999999999
Q ss_pred ecCCeEEeeCCHHHHH
Q 006897 259 LSRGSVVHYGSLELLE 274 (627)
Q Consensus 259 L~~G~iv~~G~~~~~~ 274 (627)
|++|+|+..|+|+|+.
T Consensus 238 mkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 238 MKDGEIVQVGTPEEIL 253 (386)
T ss_pred ecCCeEEEeCCHHHHH
Confidence 9999999999999885
No 83
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2e-34 Score=290.91 Aligned_cols=198 Identities=28% Similarity=0.456 Sum_probs=167.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g 62 (236)
T TIGR03864 1 ALEVAGLSFAYG---------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE---GQISVAG 62 (236)
T ss_pred CEEEEeeEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECC
Confidence 478999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
.++.. ....++.++|++|++.+++.+|++||+.+....+ +...++..+++.++++.+||++..+ .++|||+||
T Consensus 63 ~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 140 (236)
T TIGR03864 63 HDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH--GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRR 140 (236)
T ss_pred EEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHH
Confidence 87632 2233457999999998888899999998865432 2334455677899999999976554 456999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+|||+.++..+.+.|++++++.|+|||++||+++. +. .||++++|++|++++.|++++
T Consensus 141 l~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 141 VEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999976568999999999984 65 599999999999999999877
Q ss_pred HHH
Q 006897 273 LEE 275 (627)
Q Consensus 273 ~~~ 275 (627)
+.+
T Consensus 219 ~~~ 221 (236)
T TIGR03864 219 LRG 221 (236)
T ss_pred HHH
Confidence 654
No 84
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-34 Score=303.42 Aligned_cols=211 Identities=23% Similarity=0.314 Sum_probs=174.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.|..+... ....+...+|+||||+|++||++||+|+||||||||+++|+|+++|.+ |+|.++
T Consensus 4 ~~l~v~nl~~~~~~~~~~-----~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~---G~i~~~ 75 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGL-----FKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG---GELYYQ 75 (327)
T ss_pred ceEEEeeeEEEEcCCCCc-----cccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---cEEEEC
Confidence 379999999999532100 000123569999999999999999999999999999999999998853 999999
Q ss_pred CccCCC--h---hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc----CC
Q 006897 135 CHQIKK--P---AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA----GS 202 (627)
Q Consensus 135 g~~~~~--~---~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~----~~ 202 (627)
|+++.. . ..+|+.++||||++ .+.|.+||.+++....... .+..+++.++++.++++.+||.+ .. ..
T Consensus 76 g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~ 154 (327)
T PRK11308 76 GQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN-TSLSAAERREKALAMMAKVGLRPEHYDRYPHM 154 (327)
T ss_pred CEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHCCCChHHhcCCCcc
Confidence 998643 1 24577899999997 5889999999998765432 12345667788999999999963 33 35
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||++||+.++.+++++|++++++.|.|||+||||++ .+.++||++++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 66999999 999999999999999999998777999999999998 47789999999999999
Q ss_pred EeeCCHHHHHH
Q 006897 265 VHYGSLELLEE 275 (627)
Q Consensus 265 v~~G~~~~~~~ 275 (627)
++.|+++++.+
T Consensus 234 ve~g~~~~~~~ 244 (327)
T PRK11308 234 VEKGTKEQIFN 244 (327)
T ss_pred EEECCHHHHhc
Confidence 99999987743
No 85
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-34 Score=300.15 Aligned_cols=202 Identities=26% Similarity=0.399 Sum_probs=169.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||++.|+.+. ...+.+|+||||+|++||++||+||||||||||+|+|+|+++|+. |+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g 68 (286)
T PRK13646 2 TIRFDNVSYTYQKGT----------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT---GTVTVDD 68 (286)
T ss_pred EEEEEEEEEEECCCC----------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 489999999994211 012469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CC
Q 006897 136 HQIKK------PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GS 202 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~ 202 (627)
+++.. ...+++.+|||||++ .+++ .||.||+.++... .+.++++..+++.++++.+||+ +.. ..
T Consensus 69 ~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 145 (286)
T PRK13646 69 ITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKN--FKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQ 145 (286)
T ss_pred EECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHH--cCCCHHHHHHHHHHHHHHcCCChhhhhCCccc
Confidence 88632 135678899999986 4665 4999999987532 2335566677899999999996 444 45
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.++|++++++.|+|||++||+++ ++.++|||+++|++|++
T Consensus 146 LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i 224 (286)
T PRK13646 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSI 224 (286)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 66999998 999999999999999999997666899999999998 48889999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 225 ~~~g~~~~~~ 234 (286)
T PRK13646 225 VSQTSPKELF 234 (286)
T ss_pred EEECCHHHHH
Confidence 9999998764
No 86
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.1e-34 Score=293.35 Aligned_cols=198 Identities=28% Similarity=0.437 Sum_probs=168.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 64 (250)
T PRK11264 3 AIEVKNLVKKFH---------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA---GTIRVGD 64 (250)
T ss_pred cEEEeceEEEEC---------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECC
Confidence 689999999993 2359999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC----------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----
Q 006897 136 HQIKK----------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG---- 201 (627)
Q Consensus 136 ~~~~~----------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~---- 201 (627)
+++.. ....++.++|++|++.+++.+|+.||+.++.... .+...++..+++.++++.+||++..+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 143 (250)
T PRK11264 65 ITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV-KGEPKEEATARARELLAKVGLAGKETSYPR 143 (250)
T ss_pred EEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCcchhhCChh
Confidence 87532 1245678999999999998899999998854211 12234455677899999999976544
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+
T Consensus 144 ~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 144 RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMS-FARDVADRAIFMDQGR 221 (250)
T ss_pred hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEECCE
Confidence 466999998 9999999999999999999975 4899999999998 5888999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 222 i~~~~~~~~~~ 232 (250)
T PRK11264 222 IVEQGPAKALF 232 (250)
T ss_pred EEEeCCHHHHh
Confidence 99999987763
No 87
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-34 Score=286.90 Aligned_cols=188 Identities=24% Similarity=0.511 Sum_probs=161.6
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|+++.|. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (210)
T cd03269 1 LEVENVTKRFG---------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS---GEVLFDGK 62 (210)
T ss_pred CEEEEEEEEEC---------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCC
Confidence 47899999993 2459999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++. ...++.++|++|++.+++.+|++||+.+....+ +.+..+.+++++++++.+|+++..+ .++|||+||
T Consensus 63 ~~~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 138 (210)
T cd03269 63 PLD--IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLK--GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQ 138 (210)
T ss_pred chh--HHHHccEEEeccCCcCCcCCcHHHHHHHHHHHc--CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHH
Confidence 753 245678999999999999899999999865432 2334555678899999999976544 466999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 139 la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999976 4899999999998 478899999999999998754
No 88
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-34 Score=298.28 Aligned_cols=199 Identities=23% Similarity=0.395 Sum_probs=168.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 5 ~l~~~~l~~~~~~--------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~---G~i~i~g 67 (283)
T PRK13636 5 ILKVEELNYNYSD--------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDG 67 (283)
T ss_pred eEEEEeEEEEeCC--------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECC
Confidence 7999999999941 2459999999999999999999999999999999999999864 9999999
Q ss_pred ccCC-C---hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIK-K---PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~-~---~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++. . ...+++.+||+||++. .+...||+||+.++.... +.+.++..++++++++.+||.+..+ .++||
T Consensus 68 ~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G 145 (283)
T PRK13636 68 KPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL--KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFG 145 (283)
T ss_pred EECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHH
Confidence 8862 1 2356788999999963 233479999999865321 3345566678999999999986554 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++|||+++|++|++++.|
T Consensus 146 ~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9998 999999999999999999998766899999999998 478899999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 225 ~~~~~~ 230 (283)
T PRK13636 225 NPKEVF 230 (283)
T ss_pred CHHHHh
Confidence 998764
No 89
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.3e-34 Score=286.60 Aligned_cols=186 Identities=25% Similarity=0.447 Sum_probs=159.6
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 62 (208)
T cd03268 1 LKTNDLTKTYG---------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---GEITFDGK 62 (208)
T ss_pred CEEEEEEEEEC---------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCC
Confidence 47899999993 2469999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+||+||+.+....+ +. .+++++++++.+||++..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 136 (208)
T cd03268 63 SYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL--GI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLG 136 (208)
T ss_pred cccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc--CC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHH
Confidence 75432345678999999999998999999999875322 11 2456888999999976554 466999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|+++++ .|+|+|++|||++ ++.++||++++|++|++++.|
T Consensus 137 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999976 5899999999998 478899999999999998765
No 90
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-34 Score=291.99 Aligned_cols=201 Identities=24% Similarity=0.359 Sum_probs=167.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. .+.|+|.+
T Consensus 4 ~l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~ 68 (253)
T PRK14267 4 AIETVNLRVYYG---------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL 68 (253)
T ss_pred eEEEEeEEEEeC---------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 689999999993 2359999999999999999999999999999999999998741 12499999
Q ss_pred CCccCC----ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIK----KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~----~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++. ....+++.++|++|++.+++.+||.||+.++...+....+.++..++++++++.+|+.+ ...
T Consensus 69 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 148 (253)
T PRK14267 69 FGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS 148 (253)
T ss_pred CCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChh
Confidence 998863 12346678999999999999999999999875432111133455667889999998742 234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~~G~ 225 (253)
T PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPA-QAARVSDYVAFLYLGK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHH-HHHhhCCEEEEEECCE
Confidence 567999998 9999999999999999999964 589999999998 4888999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 226 i~~~~~~~~~~ 236 (253)
T PRK14267 226 LIEVGPTRKVF 236 (253)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
No 91
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.9e-34 Score=288.30 Aligned_cols=194 Identities=26% Similarity=0.408 Sum_probs=162.6
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+ ++++|+|+||++++||++||+||||||||||+++|+|+++|+. |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 62 (222)
T cd03224 1 LEVENLNAGYG---------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS---GSIRFDGR 62 (222)
T ss_pred CEEeeEEeecC---------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCE
Confidence 47899999993 2359999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc-CCccccC----CcCCccc
Q 006897 137 QIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDEL-GLTHVAG----SFVGDEE 208 (627)
Q Consensus 137 ~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~----~~~gGe~ 208 (627)
++.. ..+ .++.++|++|++.+++.+|++||+.+..... . ..+..+++.++++.+ ++++..+ .++|||+
T Consensus 63 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~ 138 (222)
T cd03224 63 DITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYAR--R--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQ 138 (222)
T ss_pred EcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhc--C--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHH
Confidence 7632 222 3567999999999999999999999875332 1 223445677788887 4655443 4679999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+++.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|++
T Consensus 139 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 216 (222)
T cd03224 139 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTA 216 (222)
T ss_pred HHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCH
Confidence 98 9999999999999999999976 5899999999998 58899999999999999999988
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 217 ~~~~ 220 (222)
T cd03224 217 AELL 220 (222)
T ss_pred HHHh
Confidence 7653
No 92
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.2e-34 Score=291.44 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+. ...|+|.+
T Consensus 1 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~ 65 (247)
T TIGR00972 1 AIEIENLNLFYG---------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF 65 (247)
T ss_pred CEEEEEEEEEEC---------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE
Confidence 478999999993 2358999999999999999999999999999999999998750 01399999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----ccc----C
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----HVA----G 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~----~ 201 (627)
+|+++.. ....++.++|+||++.+++ +|+.||+.+....+. ..+.++..+++.++++.+||. +.. .
T Consensus 66 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 143 (247)
T TIGR00972 66 DGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG-IKDKKELDEIVEESLKKAALWDEVKDRLHDSAL 143 (247)
T ss_pred CCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC-CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc
Confidence 9988632 2345678999999998888 899999998754321 123455567889999999997 433 3
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.++|+++++ ++|||++||+++ ++.++||++++|++|+
T Consensus 144 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~~l~~G~ 220 (247)
T TIGR00972 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ-QAARISDRTAFFYDGE 220 (247)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 456999998 9999999999999999999975 489999999998 5889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 221 i~~~~~~~~~~ 231 (247)
T TIGR00972 221 LVEYGPTEQIF 231 (247)
T ss_pred EEEeCCHHHHH
Confidence 99999987763
No 93
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.9e-34 Score=307.58 Aligned_cols=212 Identities=25% Similarity=0.381 Sum_probs=174.9
Q ss_pred EEEEeEEEEEccCccccccc---------ccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc
Q 006897 57 VTVRNLSYAIQPNTSILSHL---------LHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFD 127 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~---------~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~ 127 (627)
|+++||.+-|+.+......+ ..+..+...+|+|+||+|++||+++|+||||||||||+|+|+|+++|+.
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~-- 78 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSR-- 78 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC--
Confidence 57899999996543321110 0122245679999999999999999999999999999999999999864
Q ss_pred cceEEECCc----cCCC--hh---hhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc
Q 006897 128 PRSITVNCH----QIKK--PA---QLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197 (627)
Q Consensus 128 ~G~i~i~g~----~~~~--~~---~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 197 (627)
|+|.++|+ ++.. .. ++| +.++||||++.+++.+||+||+.++.... +.++++.++++.++++.+||+
T Consensus 79 -G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~--g~~~~~~~~~a~e~le~vgL~ 155 (382)
T TIGR03415 79 -GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ--GMPEAERRKRVDEQLELVGLA 155 (382)
T ss_pred -cEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCc
Confidence 99999996 3321 12 233 57999999999999999999999986432 345566778899999999998
Q ss_pred cccCC----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhh
Q 006897 198 HVAGS----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISK 255 (627)
Q Consensus 198 ~~~~~----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~ 255 (627)
+..++ ++|||+|| ||+|||+.++.++.+.|++++++.|+|||++|||++ ++.++|||
T Consensus 156 ~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~Dr 234 (382)
T TIGR03415 156 QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNR 234 (382)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 76554 56999998 999999999999999999998766899999999998 58899999
Q ss_pred heeecCCeEEeeCCHHHHH
Q 006897 256 FLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 256 i~vL~~G~iv~~G~~~~~~ 274 (627)
+++|++|+++..|+++++.
T Consensus 235 I~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 235 IAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCEEEEecCHHHHh
Confidence 9999999999999998774
No 94
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.5e-34 Score=288.32 Aligned_cols=190 Identities=33% Similarity=0.517 Sum_probs=158.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+... +.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~ 66 (218)
T cd03255 1 IELKNLSKTYGGGG-----------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGT 66 (218)
T ss_pred CeEeeeEEEecCCC-----------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCc---eeEEECCE
Confidence 47899999994210 11469999999999999999999999999999999999998864 99999998
Q ss_pred cCCCh--h---h-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 137 QIKKP--A---Q-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 137 ~~~~~--~---~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
++... . . .++.++|++|++.+++.+||+||+.++...+ +....+.+++++++++.+||++..+ +++||
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 144 (218)
T cd03255 67 DISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA--GVPKKERRERAEELLERVGLGDRLNHYPSELSGG 144 (218)
T ss_pred ehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHH
Confidence 86321 1 1 3467999999999999999999999875432 2233445678899999999976544 46699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
|+|| ||+|||+.++..+.+.|++++++.|+|||++||+++. +. +||++++|++|++
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 145 QQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 9998 9999999999999999999976458999999999984 65 9999999999974
No 95
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3e-34 Score=292.49 Aligned_cols=198 Identities=26% Similarity=0.410 Sum_probs=167.7
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 i~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (252)
T TIGR03005 1 VRFSDVTKRFG---------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGE 62 (252)
T ss_pred CEEEEEEEEeC---------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 47899999993 2459999999999999999999999999999999999998864 99999998
Q ss_pred cCCCh---------------hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC
Q 006897 137 QIKKP---------------AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG 201 (627)
Q Consensus 137 ~~~~~---------------~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 201 (627)
++... ..+++.++|++|++.+++.+|+.||+.++... ..+...++.++++.++++.+|+++..+
T Consensus 63 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~ 141 (252)
T TIGR03005 63 QLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVL-VLGMARAEAEKRAMELLDMVGLADKAD 141 (252)
T ss_pred EccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCChhHhh
Confidence 75311 24567899999999999989999999886321 112334555677899999999976544
Q ss_pred ----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 202 ----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 202 ----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
.++|||+|| ||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.++|||+++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l 220 (252)
T TIGR03005 142 HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFF 220 (252)
T ss_pred cChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 456999998 999999999999999999998756899999999998 578899999999
Q ss_pred cCCeEEeeCCHHHHH
Q 006897 260 SRGSVVHYGSLELLE 274 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~ 274 (627)
++|++++.|+++++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 221 DKGRIVEQGKPDEIF 235 (252)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999987663
No 96
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-34 Score=287.75 Aligned_cols=197 Identities=27% Similarity=0.410 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+. ..+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 70 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-----------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS---GDVIFNG 70 (233)
T ss_pred eEEEEeEEEEcCCCC-----------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECC
Confidence 699999999994210 12469999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hh---hhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 136 HQIKK--PA---QLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 136 ~~~~~--~~---~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
+++.. .. ..+ +.++|++|++.+++.+|++||+.+..... +..+++.++++.++++.+||++..+ .++|
T Consensus 71 ~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 148 (233)
T PRK11629 71 QPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG--KKKPAEINSRALEMLAAVGLEHRANHRPSELSG 148 (233)
T ss_pred EEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCH
Confidence 88632 11 123 67999999999999999999999865432 2234455678999999999976554 4569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++. +.. +|++++|++|++++.
T Consensus 149 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~-~~~~~~l~~G~i~~~ 226 (233)
T PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR-MSRQLEMRDGRLTAE 226 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh-hCEEEEEECCEEEEE
Confidence 99998 9999999999999999999976568999999999983 554 689999999999987
Q ss_pred CCH
Q 006897 268 GSL 270 (627)
Q Consensus 268 G~~ 270 (627)
++.
T Consensus 227 ~~~ 229 (233)
T PRK11629 227 LSL 229 (233)
T ss_pred ecc
Confidence 763
No 97
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.4e-34 Score=291.50 Aligned_cols=198 Identities=27% Similarity=0.377 Sum_probs=168.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|
T Consensus 5 ~l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g 66 (257)
T PRK10619 5 KLNVIDLHKRYG---------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GSIVVNG 66 (257)
T ss_pred cEEEeeeEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECC
Confidence 689999999993 2469999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC---------------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc
Q 006897 136 HQIKK---------------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA 200 (627)
Q Consensus 136 ~~~~~---------------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 200 (627)
+++.. ...+++.++|++|++.+++.+||+||+.++... .....+++.++++.++++.+|+.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~ 145 (257)
T PRK10619 67 QTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ-VLGLSKQEARERAVKYLAKVGIDERA 145 (257)
T ss_pred EEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCChhh
Confidence 87531 124567899999999999989999999875421 11224455677889999999997642
Q ss_pred -----CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 201 -----GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 201 -----~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
..++|||+|| ||+|||+.++..+.++|+++++ .|+|||++|||++ ++.++|||++
T Consensus 146 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~-~~~~~~d~i~ 223 (257)
T PRK10619 146 QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMG-FARHVSSHVI 223 (257)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEE
Confidence 3466999998 9999999999999999999975 4899999999998 5788999999
Q ss_pred eecCCeEEeeCCHHHHH
Q 006897 258 ILSRGSVVHYGSLELLE 274 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~ 274 (627)
+|++|++++.|+++++.
T Consensus 224 ~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 224 FLHQGKIEEEGAPEQLF 240 (257)
T ss_pred EEECCEEEEeCCHHHhh
Confidence 99999999999987763
No 98
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.4e-32 Score=332.52 Aligned_cols=202 Identities=24% Similarity=0.395 Sum_probs=176.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||++.|+. +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 927 ~~L~I~nLsK~y~~-------------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pts---G~I~i~ 990 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-------------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTS---GTVLVG 990 (2272)
T ss_pred ceEEEEeEEEEecC-------------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCc---eEEEEC
Confidence 47999999999941 23569999999999999999999999999999999999999864 999999
Q ss_pred CccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 135 CHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 135 g~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
|+++.. ..+.|+.+||+||++.+++.+||+||+.+.++++ +.+.++.+++++++++.+||++..+ +++|||||
T Consensus 991 G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk--g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQ 1068 (2272)
T TIGR01257 991 GKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK--GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQR 1068 (2272)
T ss_pred CEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 998643 3456788999999999999999999999987543 3345566778999999999987655 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.+++.++++|++++ .|+|||++||+++ ++..+|||+++|++|+++..|+++
T Consensus 1069 RLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~ 1145 (2272)
T TIGR01257 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPL 1145 (2272)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 9 999999999999999999994 3899999999998 588899999999999999999999
Q ss_pred HHHHHH
Q 006897 272 LLEETI 277 (627)
Q Consensus 272 ~~~~~~ 277 (627)
++.+.+
T Consensus 1146 ~Lk~~~ 1151 (2272)
T TIGR01257 1146 FLKNCF 1151 (2272)
T ss_pred HHHHhc
Confidence 887655
No 99
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=290.09 Aligned_cols=198 Identities=25% Similarity=0.453 Sum_probs=168.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 64 (241)
T PRK10895 3 TLTAKNLAKAYK---------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA---GNIIIDD 64 (241)
T ss_pred eEEEeCcEEEeC---------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 689999999993 2469999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--h-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 136 HQIKK--P-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~-~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
.++.. . ...++.++|++|++.+++.+||.||+.+..... .....++.+++++++++.+|+++..+ .++|||+
T Consensus 65 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 143 (241)
T PRK10895 65 EDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR-DDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGER 143 (241)
T ss_pred EECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc-cccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHH
Confidence 88632 1 224678999999999998899999998864322 11234455678899999999976544 4679999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|++
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~ 221 (241)
T PRK10895 144 RRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTP 221 (241)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCH
Confidence 98 9999999999999999999875 5899999999997 58899999999999999999998
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 222 ~~~~ 225 (241)
T PRK10895 222 TEIL 225 (241)
T ss_pred HHHh
Confidence 7763
No 100
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-34 Score=294.81 Aligned_cols=199 Identities=27% Similarity=0.465 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++++||+++|+. .+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~~~~--------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g 65 (277)
T PRK13652 3 LIETRDLCYSYSG--------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---GSVLIRG 65 (277)
T ss_pred eEEEEEEEEEeCC--------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECC
Confidence 6899999999941 2358999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
+++.. ...+++.+||++|++. .+...||.||+.+..... +.+.++.+++++++++.+||.+..+ .++|||+
T Consensus 66 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~ 143 (277)
T PRK13652 66 EPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL--GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEK 143 (277)
T ss_pred EECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHH
Confidence 88632 2456778999999963 233579999998865321 3345556678899999999976544 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++|||+++|++|++++.|++
T Consensus 144 qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~ 222 (277)
T PRK13652 144 KRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTV 222 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCH
Confidence 98 999999999999999999998756899999999998 58899999999999999999999
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 223 ~~~~ 226 (277)
T PRK13652 223 EEIF 226 (277)
T ss_pred HHHh
Confidence 8874
No 101
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-34 Score=264.98 Aligned_cols=193 Identities=28% Similarity=0.455 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++++++..... .+..+||++|++.|++||.+||+|||||||||||-+++|+..|++ |+|.+.|
T Consensus 6 ii~~~~l~ktvg~~-----------~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ss---GeV~l~G 71 (228)
T COG4181 6 IIEVHHLSKTVGQG-----------EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS---GEVRLLG 71 (228)
T ss_pred eeehhhhhhhhcCC-----------CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCC---ceEEEcC
Confidence 68999999988543 255689999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC-----hhhhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 136 HQIKK-----PAQLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 136 ~~~~~-----~~~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
+++.+ ...+| +++|+|||...+.|+||..||+..++.++. ....+..+.+.+.|+.+||.+..+ +++|
T Consensus 72 ~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g--e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSG 149 (228)
T COG4181 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG--ESSADSRAGAKALLEAVGLGKRLTHYPAQLSG 149 (228)
T ss_pred cchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC--CccccHHHHHHHHHHHhCcccccccCccccCc
Confidence 98743 12344 689999999999999999999999987653 234556677899999999976554 5569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
||+|| ||.+||..+..+|.++|-.+.++.|+|.|++|||+. +...|||++-|.+|+++.
T Consensus 150 GEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 150 GEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred hHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 99999 999999999999999999999999999999999997 578899999999999975
No 102
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.3e-34 Score=293.07 Aligned_cols=202 Identities=27% Similarity=0.417 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+..++|+|.++|
T Consensus 4 ~l~~~nl~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g 68 (262)
T PRK09984 4 IIRVEKLAKTFN---------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLG 68 (262)
T ss_pred EEEEeeEEEEeC---------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECC
Confidence 799999999993 34699999999999999999999999999999999999988643459999999
Q ss_pred ccCCC-------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHcCCccccC-
Q 006897 136 HQIKK-------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL------KGMSHKEKEDRVESLMDELGLTHVAG- 201 (627)
Q Consensus 136 ~~~~~-------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~- 201 (627)
+++.. ....++.++|+||++.+++.+||.||+.+...... .....++.+++++++++.+||.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 148 (262)
T PRK09984 69 RTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ 148 (262)
T ss_pred EecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC
Confidence 87532 12446789999999999998999999987642100 01112344567899999999976544
Q ss_pred ---CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 202 ---SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 202 ---~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.++|||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|+
T Consensus 149 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~ 227 (262)
T PRK09984 149 RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALR 227 (262)
T ss_pred CccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 456999998 999999999999999999998656899999999998 4889999999999
Q ss_pred CCeEEeeCCHHHH
Q 006897 261 RGSVVHYGSLELL 273 (627)
Q Consensus 261 ~G~iv~~G~~~~~ 273 (627)
+|++++.|+++++
T Consensus 228 ~g~i~~~g~~~~~ 240 (262)
T PRK09984 228 QGHVFYDGSSQQF 240 (262)
T ss_pred CCEEEEeCCHHHh
Confidence 9999999998764
No 103
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-34 Score=295.68 Aligned_cols=199 Identities=24% Similarity=0.385 Sum_probs=169.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+. |+|.++|
T Consensus 5 ~l~~~~l~~~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~---G~i~~~g 68 (279)
T PRK13635 5 IIRVEHISFRYPD-------------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA---GTITVGG 68 (279)
T ss_pred eEEEEEEEEEeCC-------------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECC
Confidence 6999999999942 12459999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 136 HQIKK--PAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
+++.. ....++.+||++|++ .+++..||.||+.++.... +.+.++.+++++++++.+||++..+ .++|||+
T Consensus 69 ~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~ 146 (279)
T PRK13635 69 MVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI--GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQK 146 (279)
T ss_pred EECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC--CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHH
Confidence 98643 234567899999997 3666789999999875332 2345566778999999999987554 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..++++|++++++.|+|||++||+++. +. .|||+++|++|++++.|++
T Consensus 147 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~ 224 (279)
T PRK13635 147 QRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTP 224 (279)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCH
Confidence 98 9999999999999999999987668999999999984 65 5999999999999999998
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 225 ~~~~ 228 (279)
T PRK13635 225 EEIF 228 (279)
T ss_pred HHHh
Confidence 8764
No 104
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-34 Score=290.83 Aligned_cols=200 Identities=22% Similarity=0.360 Sum_probs=166.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 5 ~l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 66 (255)
T PRK11300 5 LLSVSGLMMRFG---------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRG 66 (255)
T ss_pred eEEEeeEEEEEC---------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---ceEEECC
Confidence 799999999993 2469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcC--------CC---C--CHHHHHHHHHHHHHHcCCccc
Q 006897 136 HQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRL--------KG---M--SHKEKEDRVESLMDELGLTHV 199 (627)
Q Consensus 136 ~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--------~~---~--~~~~~~~~v~~~l~~lgL~~~ 199 (627)
+++.. ... .+..++|++|++.+++.+||+||+.++..... .. . ...+..+++.++++.+||.+.
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 146 (255)
T PRK11300 67 QHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH 146 (255)
T ss_pred EECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh
Confidence 88632 122 34569999999999999999999998642110 00 0 112334578889999999765
Q ss_pred cC----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 200 AG----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 200 ~~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
.+ .++|||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||+++
T Consensus 147 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~ 225 (255)
T PRK11300 147 ANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIY 225 (255)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 54 456999998 999999999999999999997655899999999998 5889999999
Q ss_pred eecCCeEEeeCCHHHHH
Q 006897 258 ILSRGSVVHYGSLELLE 274 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~ 274 (627)
+|++|++++.|+++++.
T Consensus 226 ~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 226 VVNQGTPLANGTPEEIR 242 (255)
T ss_pred EEECCeEEecCCHHHHh
Confidence 99999999999987763
No 105
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-34 Score=289.50 Aligned_cols=201 Identities=25% Similarity=0.390 Sum_probs=167.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i~i 133 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|. ..+.|+|.+
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 67 (250)
T PRK14247 3 KIEIRDLKVSFG---------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL 67 (250)
T ss_pred eEEEEeeEEEEC---------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE
Confidence 589999999993 245999999999999999999999999999999999998752 113499999
Q ss_pred CCccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccCCc
Q 006897 134 NCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAGSF 203 (627)
Q Consensus 134 ~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~~~ 203 (627)
+|+++.. ...+++.+||++|++.+++.+||.||+.++..........++..+++.++++.+||.+ ....+
T Consensus 68 ~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 147 (250)
T PRK14247 68 DGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKL 147 (250)
T ss_pred CCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccC
Confidence 9988632 3456778999999998888899999999875332111133455677899999999853 22456
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++ + |+|+|++||+++ ++.++||++++|++|+++
T Consensus 148 SgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIV 224 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEE
Confidence 7999998 999999999999999999985 3 789999999998 478899999999999999
Q ss_pred eeCCHHHHH
Q 006897 266 HYGSLELLE 274 (627)
Q Consensus 266 ~~G~~~~~~ 274 (627)
+.|+++++.
T Consensus 225 ~~g~~~~~~ 233 (250)
T PRK14247 225 EWGPTREVF 233 (250)
T ss_pred EECCHHHHH
Confidence 999988764
No 106
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-34 Score=295.76 Aligned_cols=203 Identities=21% Similarity=0.321 Sum_probs=170.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|+++.|+. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+....|+|.++
T Consensus 4 ~~l~i~~l~~~~~~-------------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~ 70 (282)
T PRK13640 4 NIVEFKHVSFTYPD-------------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVD 70 (282)
T ss_pred ceEEEEEEEEEcCC-------------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEEC
Confidence 37999999999942 12358999999999999999999999999999999999998864223899999
Q ss_pred CccCCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
|+++.. ....++++||++|++. +++..||.||+.+.... .+.+.++.+++++++++.+||++..+ .++|||
T Consensus 71 g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~ 148 (282)
T PRK13640 71 GITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN--RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQ 148 (282)
T ss_pred CEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHh--CCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHH
Confidence 998642 2346678999999974 56678999999986432 23355666778999999999987655 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|++++++.|+|||++||+++. + ..||++++|++|++++.|+
T Consensus 149 ~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~ 226 (282)
T PRK13640 149 KQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGS 226 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCC
Confidence 998 9999999999999999999987668999999999984 5 5799999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 227 ~~~~~ 231 (282)
T PRK13640 227 PVEIF 231 (282)
T ss_pred HHHHh
Confidence 98764
No 107
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-34 Score=291.84 Aligned_cols=187 Identities=21% Similarity=0.344 Sum_probs=161.8
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 11 ~~l~i~~l~~~~~---------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~ 72 (257)
T PRK11247 11 TPLLLNAVSKRYG---------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA---GELLAG 72 (257)
T ss_pred CcEEEEEEEEEEC---------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEEC
Confidence 3699999999993 2459999999999999999999999999999999999998864 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
|.++ ..+++.++|++|++.+++.+||+||+.++.. ...++++.++++.+||.+..+ .++|||+||
T Consensus 73 g~~~---~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqr 141 (257)
T PRK11247 73 TAPL---AEAREDTRLMFQDARLLPWKKVIDNVGLGLK--------GQWRDAALQALAAVGLADRANEWPAALSGGQKQR 141 (257)
T ss_pred CEEH---HHhhCceEEEecCccCCCCCcHHHHHHhccc--------chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 8763 3456789999999999988999999987521 112457889999999976544 456999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|++++.|+.+
T Consensus 142 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 142 VALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999997666899999999998 478899999999999999988654
No 108
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-34 Score=300.35 Aligned_cols=207 Identities=22% Similarity=0.313 Sum_probs=168.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccceEEEC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ-DFDPRSITVN 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~-~~~~G~i~i~ 134 (627)
+|+++||+++|..+ ++...+|+||||+|++||++||+|+||||||||+++|+|++++. ..+.|+|.++
T Consensus 3 ~L~v~~l~~~y~~~-----------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~ 71 (330)
T PRK15093 3 LLDIRNLTIEFKTS-----------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFD 71 (330)
T ss_pred eEEEeeeEEEEeCC-----------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEEC
Confidence 68999999999532 12356999999999999999999999999999999999998742 1245999999
Q ss_pred CccCCC--hhh---h-cccEEEEccCCC--CCCCCCHHHHHHHHHHhc-CCC---CCHHHHHHHHHHHHHHcCCccc---
Q 006897 135 CHQIKK--PAQ---L-RKICGFVAQEDN--LLPLLTVKETLMFSANFR-LKG---MSHKEKEDRVESLMDELGLTHV--- 199 (627)
Q Consensus 135 g~~~~~--~~~---~-r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~--- 199 (627)
|+++.. ..+ + ++.++||||++. +.|.+||.+++....... ..+ ....+.++++.++|+.+||.+.
T Consensus 72 g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~ 151 (330)
T PRK15093 72 DIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA 151 (330)
T ss_pred CEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH
Confidence 998642 222 2 357999999975 678899999998643211 111 1123456789999999999642
Q ss_pred ----cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 200 ----AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 200 ----~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
...++|||+|| ||+|||+.++.+++++|+++.++.|.|||+||||++ .+.++|||++
T Consensus 152 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~ 230 (330)
T PRK15093 152 MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKIN 230 (330)
T ss_pred HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 24567999999 999999999999999999998766999999999998 4889999999
Q ss_pred eecCCeEEeeCCHHHHH
Q 006897 258 ILSRGSVVHYGSLELLE 274 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~ 274 (627)
+|++|++++.|+++++.
T Consensus 231 vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 231 VLYCGQTVETAPSKELV 247 (330)
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999988764
No 109
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-34 Score=290.80 Aligned_cols=192 Identities=24% Similarity=0.398 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ml~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 62 (255)
T PRK11248 1 MLQISHLYADYG---------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDG 62 (255)
T ss_pred CEEEEEEEEEeC---------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 478999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
+++.. .++.+||++|++.+++.+||.||+.+....+ +...++..+++.++++.+||.+..+ .++|||+||
T Consensus 63 ~~~~~---~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl 137 (255)
T PRK11248 63 KPVEG---PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA--GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRV 137 (255)
T ss_pred EECCC---CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH
Confidence 88532 2346899999999998899999998865322 2344555678999999999976544 456999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec--CCeEEeeCCHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS--RGSVVHYGSLE 271 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 271 (627)
||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|+ +|++++.++.+
T Consensus 138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999986556899999999998 5889999999998 59999887653
No 110
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-34 Score=293.05 Aligned_cols=200 Identities=20% Similarity=0.352 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 11 ~l~i~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 72 (265)
T PRK10575 11 TFALRNVSFRVP---------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE---GEILLDA 72 (265)
T ss_pred eEEEeeEEEEEC---------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECC
Confidence 799999999993 2469999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++.. ...+++.++|++|++.+++.+|+.||+.++...... +..+.+.+++++++++.+||++..+ .++|||
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 152 (265)
T PRK10575 73 QPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGE 152 (265)
T ss_pred EehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHH
Confidence 87532 345667899999998888889999999875311100 1112334567899999999976544 466999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~ 231 (265)
T PRK10575 153 RQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGT 231 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecC
Confidence 998 999999999999999999997655899999999998 5889999999999999999998
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 232 ~~~~~ 236 (265)
T PRK10575 232 PAELM 236 (265)
T ss_pred HHHhc
Confidence 87653
No 111
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=5.2e-34 Score=286.18 Aligned_cols=197 Identities=27% Similarity=0.375 Sum_probs=158.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|..+. ....+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|
T Consensus 1 ~l~~~~v~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 66 (228)
T cd03257 1 LLEVKNLSVSFPTGG-----------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS---GSIIFDG 66 (228)
T ss_pred CeEEEeeeEeccCCC-----------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 478999999994210 11259999999999999999999999999999999999998864 9999999
Q ss_pred ccCCCh-----hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHHHcCCc-ccc----CC
Q 006897 136 HQIKKP-----AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDR-VESLMDELGLT-HVA----GS 202 (627)
Q Consensus 136 ~~~~~~-----~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~----~~ 202 (627)
+++... ...++.++|++|++ .+++.+||+||+.+........ ..++..++ ++++++.+++. +.. ..
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 145 (228)
T cd03257 67 KDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRYPHE 145 (228)
T ss_pred EEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCCchh
Confidence 886431 34567899999998 4667899999998865432111 12222223 36889999984 343 44
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++
T Consensus 146 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i 224 (228)
T cd03257 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKI 224 (228)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEE
Confidence 66999998 999999999999999999998655899999999998 47789999999999999
Q ss_pred EeeC
Q 006897 265 VHYG 268 (627)
Q Consensus 265 v~~G 268 (627)
+..|
T Consensus 225 ~~~g 228 (228)
T cd03257 225 VEEG 228 (228)
T ss_pred EecC
Confidence 8764
No 112
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-34 Score=288.25 Aligned_cols=195 Identities=21% Similarity=0.356 Sum_probs=164.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 5 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g 66 (237)
T PRK11614 5 MLSFDKVSAHYG---------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS---GRIVFDG 66 (237)
T ss_pred EEEEEeEEEeeC---------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECC
Confidence 799999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc-CCccc----cCCcCCcc
Q 006897 136 HQIKK--PA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDEL-GLTHV----AGSFVGDE 207 (627)
Q Consensus 136 ~~~~~--~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~----~~~~~gGe 207 (627)
+++.. .. ..++.++|++|++.+++.+||.||+.++.... ..++.+++++++++.+ ++.+. .+.++|||
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~ 142 (237)
T PRK11614 67 KDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA----ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGE 142 (237)
T ss_pred EecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc----ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHH
Confidence 88633 12 25678999999999999899999998864211 1233345667777777 46543 34567999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++|||+++|++|++++.|+
T Consensus 143 ~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 220 (237)
T PRK11614 143 QQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDT 220 (237)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCC
Confidence 998 9999999999999999999976 4899999999998 5899999999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 221 ~~~~~ 225 (237)
T PRK11614 221 GDALL 225 (237)
T ss_pred HHHHh
Confidence 98774
No 113
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-34 Score=287.67 Aligned_cols=197 Identities=24% Similarity=0.413 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 63 (242)
T PRK11124 2 SIQLNGINCFYG---------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAG 63 (242)
T ss_pred EEEEEeeEEEEC---------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 589999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCC-----C---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----Cc
Q 006897 136 HQIK-----K---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SF 203 (627)
Q Consensus 136 ~~~~-----~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~ 203 (627)
+++. . ....++.++|++|++.+++.+||.||+.+... ...+...++..+++.++++.+|+++..+ .+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 142 (242)
T PRK11124 64 NHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC-RVLGLSKDQALARAEKLLERLRLKPYADRFPLHL 142 (242)
T ss_pred EecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 8752 1 12456789999999999999999999975321 1112234455677899999999976554 45
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|+++++ .|+|+|++||+++ ++.++||++++|++|+++
T Consensus 143 S~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASRVVYMENGHIV 220 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEEEEEECCEEE
Confidence 6999998 9999999999999999999975 5899999999998 478899999999999999
Q ss_pred eeCCHHHH
Q 006897 266 HYGSLELL 273 (627)
Q Consensus 266 ~~G~~~~~ 273 (627)
+.|+++++
T Consensus 221 ~~~~~~~~ 228 (242)
T PRK11124 221 EQGDASCF 228 (242)
T ss_pred EeCCHHHh
Confidence 99988754
No 114
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=288.88 Aligned_cols=199 Identities=22% Similarity=0.348 Sum_probs=165.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
++|+++|+++.|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|.. .+.|+|.
T Consensus 11 ~~l~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~ 75 (258)
T PRK14268 11 PQIKVENLNLWYG---------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS 75 (258)
T ss_pred eeEEEeeeEEEeC---------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEE
Confidence 4799999999993 2459999999999999999999999999999999999987520 1249999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----cc----c
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----HV----A 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~----~ 200 (627)
++|+++.. ...+++.+||++|++.+++ +|++||+.+....+ +.+.++.+++++++++.+|+. +. .
T Consensus 76 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 152 (258)
T PRK14268 76 IEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH--GANKKDLDGVVENALRSAALWDETSDRLKSPA 152 (258)
T ss_pred ECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh
Confidence 99988532 1245678999999998888 89999999875432 234445566789999999883 22 3
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|++++ + |+|||++|||++ ++.++||++++|++|
T Consensus 153 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~-~~~~~~d~i~~l~~G 229 (258)
T PRK14268 153 LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQ-QAARISDYTGFFLMG 229 (258)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 4567999998 999999999999999999985 3 789999999998 478899999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 230 ~i~~~~~~~~~~ 241 (258)
T PRK14268 230 ELIEFGQTRQIF 241 (258)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
No 115
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-34 Score=294.39 Aligned_cols=201 Identities=24% Similarity=0.414 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+... ...+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g 68 (287)
T PRK13641 2 SIKFENVDYIYSPGT----------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS---GTITIAG 68 (287)
T ss_pred EEEEEEEEEEcCCCC----------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 589999999994210 012469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cccC----C
Q 006897 136 HQIKK------PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVAG----S 202 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~----~ 202 (627)
+++.. ....++.+||++|++ .++ .+||.||+.++.... +..+++..++++++++.+||+ +..+ .
T Consensus 69 ~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 145 (287)
T PRK13641 69 YHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF--GFSEDEAKEKALKWLKKVGLSEDLISKSPFE 145 (287)
T ss_pred EECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCChhHhhCCccc
Confidence 88632 234567899999996 355 479999999865332 234556677899999999996 4444 4
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++
T Consensus 146 LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i 223 (287)
T PRK13641 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMD-DVAEYADDVLVLEHGKL 223 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 66999999 9999999999999999999975 5899999999998 58899999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 224 ~~~g~~~~~~ 233 (287)
T PRK13641 224 IKHASPKEIF 233 (287)
T ss_pred EEeCCHHHHh
Confidence 9999988764
No 116
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1e-33 Score=286.89 Aligned_cols=198 Identities=23% Similarity=0.360 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 2 ~i~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g 63 (242)
T TIGR03411 2 ILYLEGLSVSFD---------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE---GSVLFGG 63 (242)
T ss_pred eEEEEeeEEEcC---------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECC
Confidence 689999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHcCCccccCC----
Q 006897 136 HQIKK--PA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRL------KGMSHKEKEDRVESLMDELGLTHVAGS---- 202 (627)
Q Consensus 136 ~~~~~--~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~---- 202 (627)
+++.. .. ..++.++|++|++.+++.+||+||+.++..... .+..+++.+++++++++.+|+++..++
T Consensus 64 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (242)
T TIGR03411 64 TDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGL 143 (242)
T ss_pred eecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 87532 12 234579999999999999999999998643210 001223456678999999999865544
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|++
T Consensus 144 LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDME-FVRSIADKVTVLHQGSV 220 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHH-HHHHhCCEEEEEECCeE
Confidence 56999998 9999999999999999999964 689999999998 58889999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 221 ~~~~~~~~~~ 230 (242)
T TIGR03411 221 LAEGSLDQVQ 230 (242)
T ss_pred EeeCCHHHHh
Confidence 9999987763
No 117
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=6.4e-34 Score=282.88 Aligned_cols=187 Identities=28% Similarity=0.470 Sum_probs=159.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~~--------------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g 63 (214)
T TIGR02673 1 MIEFHNVSKAYPG--------------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAG 63 (214)
T ss_pred CEEEEeeeEEeCC--------------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 4789999999931 2359999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----CCcCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----GSFVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gG 206 (627)
+++.. . ..+++.++|++|++.+++.+|+.||+.+....+ +...++.+++++++++.+||.+.. ..++||
T Consensus 64 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 141 (214)
T TIGR02673 64 EDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR--GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGG 141 (214)
T ss_pred EEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHH
Confidence 88632 1 235678999999999998899999999875432 223445567889999999997654 356699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
|+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+
T Consensus 142 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 142 EQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 9998 9999999999999999999875 4899999999998 5888999999999985
No 118
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-33 Score=289.36 Aligned_cols=198 Identities=27% Similarity=0.464 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~---------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~---G~i~~~g 63 (258)
T PRK13548 2 MLEARNLSVRLG---------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---GEVRLNG 63 (258)
T ss_pred eEEEEeEEEEeC---------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECC
Confidence 689999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
+++.. ....++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||++..+ .++|||+|
T Consensus 64 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~q 141 (258)
T PRK13548 64 RPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH--GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQ 141 (258)
T ss_pred EEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc--CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 87532 2345678999999988878889999998864221 1122344567899999999976544 45688886
Q ss_pred C------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 210 R------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 210 r------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|+++
T Consensus 142 rv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 220 (258)
T PRK13548 142 RVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLV 220 (258)
T ss_pred HHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEE
Confidence 5 899999999999999999997446899999999998 488899999999999999
Q ss_pred eeCCHHHHH
Q 006897 266 HYGSLELLE 274 (627)
Q Consensus 266 ~~G~~~~~~ 274 (627)
+.|+++++.
T Consensus 221 ~~~~~~~~~ 229 (258)
T PRK13548 221 ADGTPAEVL 229 (258)
T ss_pred eeCCHHHHh
Confidence 999987664
No 119
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-34 Score=289.63 Aligned_cols=199 Identities=23% Similarity=0.382 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~---------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 63 (255)
T PRK11231 2 TLRTENLTVGYG---------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS---GTVFLGD 63 (255)
T ss_pred EEEEEeEEEEEC---------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---cEEEECC
Confidence 689999999993 2469999999999999999999999999999999999998864 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF--RLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++. +...+++.++|++|+..+++.+|+.||+.++... ...+..+++..++++++++.+||++..+ .++|||
T Consensus 64 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 143 (255)
T PRK11231 64 KPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQ 143 (255)
T ss_pred EEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHH
Confidence 8753 2334567899999999888889999999885211 0011112344567899999999976544 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+++..|+
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 144 RQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcC
Confidence 998 9999999999999999999876 4899999999998 5889999999999999999998
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 222 ~~~~~ 226 (255)
T PRK11231 222 PEEVM 226 (255)
T ss_pred HHHhc
Confidence 87663
No 120
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=288.02 Aligned_cols=200 Identities=20% Similarity=0.276 Sum_probs=165.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
.+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|.. .+.|+|.
T Consensus 6 ~~l~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 70 (254)
T PRK14273 6 AIIETENLNLFYT---------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI 70 (254)
T ss_pred ceEEEeeeEEEeC---------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE
Confidence 3799999999993 2359999999999999999999999999999999999998741 1249999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----c----cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----H----VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~----~~ 200 (627)
++|+++.. ....++.++|++|++.+++ +||+||+.++..... ....++.++++.++++.+++. + ..
T Consensus 71 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~ 148 (254)
T PRK14273 71 YEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG-TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA 148 (254)
T ss_pred ECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc
Confidence 99987531 2346778999999988885 899999998753321 113344567788999998872 2 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..++++|++++ + ++|||++||+++ ++.++|||+++|++|
T Consensus 149 ~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~-~~~~~~d~i~~l~~G 225 (254)
T PRK14273 149 LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQ-QAGRISDRTAFFLNG 225 (254)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 4567999998 999999999999999999995 3 689999999998 488999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
+++..|+++++.
T Consensus 226 ~i~~~g~~~~~~ 237 (254)
T PRK14273 226 CIEEESSTDELF 237 (254)
T ss_pred EEEEeCCHHHHH
Confidence 999999988764
No 121
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=287.62 Aligned_cols=199 Identities=23% Similarity=0.332 Sum_probs=164.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~ 132 (627)
++|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+ |...+.|+|.
T Consensus 5 ~~l~~~~l~~~~~---------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 69 (253)
T PRK14242 5 PKMEARGLSFFYG---------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69 (253)
T ss_pred cEEEEeeeEEEEC---------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEE
Confidence 3799999999993 2359999999999999999999999999999999999864 2111349999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
++|+++.. ...+++.++|++|++.+++ .||+||+.++...+. ....++.+++++++++.+|+.+ ..
T Consensus 70 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (253)
T PRK14242 70 LDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG-VKDKAYLAERVERSLRHAALWDEVKDRLHESA 147 (253)
T ss_pred ECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc
Confidence 99988632 2345678999999998888 499999998754321 1123445677889999999843 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|++++ + ++|||++|||++ ++.++||++++|++|
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~-~~~~~~d~v~~l~~G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQ-QAARVSDVTAFFYMG 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHH-HHHHhCCEEEEEECC
Confidence 4567999998 999999999999999999994 3 689999999998 488999999999999
Q ss_pred eEEeeCCHHHH
Q 006897 263 SVVHYGSLELL 273 (627)
Q Consensus 263 ~iv~~G~~~~~ 273 (627)
++++.|+++++
T Consensus 225 ~i~~~g~~~~~ 235 (253)
T PRK14242 225 KLIEVGPTEQI 235 (253)
T ss_pred EEEEeCCHHHH
Confidence 99999998765
No 122
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-33 Score=290.53 Aligned_cols=197 Identities=28% Similarity=0.477 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|.. .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|.. |+|.++|
T Consensus 1 ~l~~~~l~~~~~~--------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g 63 (275)
T PRK13639 1 ILETRDLKYSYPD--------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS---GEVLIKG 63 (275)
T ss_pred CEEEEEEEEEeCC--------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECC
Confidence 4789999999941 2358999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC----hhhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCC
Q 006897 136 HQIKK----PAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVG 205 (627)
Q Consensus 136 ~~~~~----~~~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~g 205 (627)
+++.. ....++.++|++|++. ++ ..||.||+.++.... +..+++..+++.++++.+||++..++ ++|
T Consensus 64 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~ 140 (275)
T PRK13639 64 EPIKYDKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNL--GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSG 140 (275)
T ss_pred EECccccchHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCH
Confidence 88631 1245778999999963 44 469999998864321 23445566788999999999776554 559
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|++++.
T Consensus 141 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~ 218 (275)
T PRK13639 141 GQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVD-LVPVYADKVYVMSDGKIIKE 218 (275)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99998 99999999999999999999764 899999999998 47889999999999999999
Q ss_pred CCHHHHH
Q 006897 268 GSLELLE 274 (627)
Q Consensus 268 G~~~~~~ 274 (627)
|+++++.
T Consensus 219 g~~~~~~ 225 (275)
T PRK13639 219 GTPKEVF 225 (275)
T ss_pred CCHHHHh
Confidence 9998874
No 123
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-34 Score=291.52 Aligned_cols=200 Identities=23% Similarity=0.378 Sum_probs=167.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|
T Consensus 7 ~l~i~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g 68 (265)
T PRK10253 7 RLRGEQLTLGYG---------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH---GHVWLDG 68 (265)
T ss_pred EEEEEEEEEEEC---------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECC
Confidence 799999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++.. ....++.++|++|++.+++.+|++||+.++...... ....+..+++++++++.+||++..+ .++|||
T Consensus 69 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq 148 (265)
T PRK10253 69 EHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQ 148 (265)
T ss_pred EEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHH
Confidence 87532 344567899999999988889999999875211100 0112334567899999999976544 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+
T Consensus 149 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~ 227 (265)
T PRK10253 149 RQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGA 227 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 998 999999999999999999997655899999999998 5899999999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 228 ~~~~~ 232 (265)
T PRK10253 228 PKEIV 232 (265)
T ss_pred HHHHh
Confidence 87764
No 124
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-34 Score=293.75 Aligned_cols=196 Identities=26% Similarity=0.382 Sum_probs=165.3
Q ss_pred EEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.++|+++.| +.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++
T Consensus 26 ~~~~~~~~~---------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~---G~i~i~g~~ 87 (269)
T cd03294 26 SKEEILKKT---------------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQD 87 (269)
T ss_pred hhhhhhhhc---------------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEE
Confidence 466777777 24569999999999999999999999999999999999999864 999999988
Q ss_pred CCC--hhh---h-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 138 IKK--PAQ---L-RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 138 ~~~--~~~---~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+.. ... . ++.++|++|++.+++.+||+||+.+..... +....+..++++++++.+||.+..+ .++|||
T Consensus 88 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq 165 (269)
T cd03294 88 IAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ--GVPRAEREERAAEALELVGLEGWEHKYPDELSGGM 165 (269)
T ss_pred ccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHH
Confidence 632 111 2 357999999999998899999999875432 2234455677899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+
T Consensus 166 ~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~ 244 (269)
T cd03294 166 QQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGT 244 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCC
Confidence 998 999999999999999999997656899999999998 5889999999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 245 ~~~~~ 249 (269)
T cd03294 245 PEEIL 249 (269)
T ss_pred HHHHH
Confidence 87764
No 125
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.3e-33 Score=289.86 Aligned_cols=208 Identities=20% Similarity=0.349 Sum_probs=168.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.... ....+++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~------~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 72 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGL------FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ---GTVSFRG 72 (265)
T ss_pred eEEEEeEEEEeccCcc------ccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 6899999999942100 000013569999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hh---hhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCc
Q 006897 136 HQIKK--PA---QLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSF 203 (627)
Q Consensus 136 ~~~~~--~~---~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~ 203 (627)
+++.. .. .+++.++|++|++ .+++.+||+||+.+..... .....++.++++.++++.+||+ +.. ..+
T Consensus 73 ~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 151 (265)
T TIGR02769 73 QDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL-TSLDESEQKARIAELLDMVGLRSEDADKLPRQL 151 (265)
T ss_pred EEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhC
Confidence 88632 11 2467899999996 4667889999998764321 1223345567789999999995 444 346
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ .+.++||++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEE
Confidence 6999998 999999999999999999998756899999999998 478899999999999999
Q ss_pred eeCCHHHHH
Q 006897 266 HYGSLELLE 274 (627)
Q Consensus 266 ~~G~~~~~~ 274 (627)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (265)
T TIGR02769 231 EECDVAQLL 239 (265)
T ss_pred EECCHHHHc
Confidence 999988764
No 126
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=291.96 Aligned_cols=204 Identities=20% Similarity=0.354 Sum_probs=169.5
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+... +...+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+. |+|.++
T Consensus 3 ~~l~~~~l~~~~~~~~---------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~ 70 (280)
T PRK13633 3 EMIKCKNVSYKYESNE---------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE---GKVYVD 70 (280)
T ss_pred ceEEEeeeEEEcCCCC---------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEC
Confidence 3799999999995321 0113469999999999999999999999999999999999999864 999999
Q ss_pred CccCCC---hhhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 135 CHQIKK---PAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 135 g~~~~~---~~~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
|+++.. ....++.+||+||++. ++ ..||.||+.|+.... +.++++.+++++++++.+||++..+ +++|
T Consensus 71 g~~i~~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~ 147 (280)
T PRK13633 71 GLDTSDEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL--GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSG 147 (280)
T ss_pred CEeccccccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc--CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCH
Confidence 988643 2346788999999974 44 469999999875322 3345566778999999999976554 4569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++. +.. ||++++|++|++++.
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVME 225 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEEe
Confidence 99998 9999999999999999999976568999999999984 654 999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+++++..
T Consensus 226 g~~~~~~~ 233 (280)
T PRK13633 226 GTPKEIFK 233 (280)
T ss_pred cCHHHHhc
Confidence 99988753
No 127
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-34 Score=281.74 Aligned_cols=188 Identities=27% Similarity=0.483 Sum_probs=160.3
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++| +++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 i~~~~~~~~~~---------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 61 (211)
T cd03264 1 LQLENLTKRYG---------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS---GTIRIDGQ 61 (211)
T ss_pred CEEEEEEEEEC---------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCC
Confidence 47899999993 235999999999999 999999999999999999999999864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
++.. ....++.++|++|++.+++.+||.||+.+....+ +.++++.+++++++++.+||++..+ .++|||+||
T Consensus 62 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 139 (211)
T cd03264 62 DVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK--GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV 139 (211)
T ss_pred ccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHH
Confidence 7632 2345778999999999999899999999865432 2233445677899999999976544 466999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|+++++ ++|||++|||++ ++.++|||+++|++|++++.|
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999974 489999999998 478899999999999998765
No 128
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-34 Score=292.15 Aligned_cols=197 Identities=24% Similarity=0.376 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+. .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+. |+|.++|
T Consensus 1 ml~~~~l~~~~~~--------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 63 (274)
T PRK13644 1 MIRLENVSYSYPD--------------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQK---GKVLVSG 63 (274)
T ss_pred CEEEEEEEEEcCC--------------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECC
Confidence 4789999999931 2359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC---hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKK---PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~---~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
.++.. ...+++.+||++|++. .+...|+.||+.+..... +.+.++..++++++++.+||++..+ .++|||
T Consensus 64 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 141 (274)
T PRK13644 64 IDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL--CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQ 141 (274)
T ss_pred EECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc--CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHH
Confidence 88632 2356778999999975 355679999999865322 2345566678999999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++ +.||++++|++|++++.|+
T Consensus 142 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~ 218 (274)
T PRK13644 142 GQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGE 218 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECC
Confidence 998 9999999999999999999975 5899999999998 46 5699999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 219 ~~~~~ 223 (274)
T PRK13644 219 PENVL 223 (274)
T ss_pred HHHHh
Confidence 88764
No 129
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-33 Score=291.64 Aligned_cols=200 Identities=23% Similarity=0.412 Sum_probs=168.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|++++|+. +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++
T Consensus 6 ~~l~~~nl~~~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~ 69 (271)
T PRK13632 6 VMIKVENVSFSYPN-------------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS---GEIKID 69 (271)
T ss_pred eEEEEEeEEEEcCC-------------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEEC
Confidence 47999999999942 12469999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
|+++.. ...+++.+||++|++. .++.+||+||+.++.... +...++.+++++++++.+||++..+ .++|||
T Consensus 70 g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 147 (271)
T PRK13632 70 GITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK--KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQ 147 (271)
T ss_pred CEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHH
Confidence 988632 2456788999999974 566789999999865322 2344555677899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..++++|++++++.++|||++||+++. + ..||++++|++|+++..|+
T Consensus 148 ~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~ 225 (271)
T PRK13632 148 KQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGK 225 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecC
Confidence 998 9999999999999999999976545899999999984 5 4799999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 226 ~~~~~ 230 (271)
T PRK13632 226 PKEIL 230 (271)
T ss_pred HHHHh
Confidence 87764
No 130
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-33 Score=284.98 Aligned_cols=196 Identities=21% Similarity=0.388 Sum_probs=164.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|.. + ..|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~~---------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 60 (232)
T PRK10771 1 MLKLTDITWLYHH---------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS---GSLTLNG 60 (232)
T ss_pred CeEEEEEEEEECC---------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 4789999999941 1 238999999999999999999999999999999998864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
+++......++.++|++|++.+++.+|+.||+.++..... . ..+..++++.++++.+||++..+ .++|||+||
T Consensus 61 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 138 (232)
T PRK10771 61 QDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL-K-LNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRV 138 (232)
T ss_pred eecCcCChhhccEEEEecccccccCCcHHHHHhccccccc-C-CCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHH
Confidence 8864322235679999999999998999999987532111 1 12344667999999999976555 456999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++++
T Consensus 139 ~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999997656899999999998 58889999999999999999998776
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 218 ~ 218 (232)
T PRK10771 218 L 218 (232)
T ss_pred H
Confidence 4
No 131
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-34 Score=282.04 Aligned_cols=189 Identities=23% Similarity=0.401 Sum_probs=157.9
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++. .|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 i~~~~l~~~~~---------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~ 60 (211)
T cd03298 1 VRLDKIRFSYG---------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS---GRVLINGV 60 (211)
T ss_pred CEEEeEEEEeC---------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCE
Confidence 47899999993 122 39999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+|++||+.++..... . ..++.++++.++++.+||++..+ .++|||+||
T Consensus 61 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 138 (211)
T cd03298 61 DVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL-K-LTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVA 138 (211)
T ss_pred EcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc-C-ccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHH
Confidence 864322345789999999999999999999987642111 1 12344567899999999976554 456999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999997666899999999998 488899999999999998754
No 132
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=287.58 Aligned_cols=200 Identities=25% Similarity=0.406 Sum_probs=166.2
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~ 132 (627)
.+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |...+.|+|.
T Consensus 12 ~~l~~~~l~~~~~---------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 12 SKIQVRNLNFYYG---------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred ceEEEEEEEEEeC---------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 4799999999993 2359999999999999999999999999999999999986 2212349999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--------ccc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--------HVA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------~~~ 200 (627)
++|+++.. ...+++.++|++|++.+++ .|++||+.+..... .+.+.++.+++++++++.+++. ...
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 154 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLF-EKLSRAEMDERVEWALTKAALWNEVKDKLHQSG 154 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhc-CCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC
Confidence 99988632 2346778999999998887 79999999875322 1234455567889999999973 223
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
.+++|||+|| ||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++||++++|++|
T Consensus 155 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~~G 231 (260)
T PRK10744 155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQ-QAARCSDYTAFMYLG 231 (260)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 4577999998 999999999999999999995 3 689999999998 478899999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 232 ~i~~~g~~~~~~ 243 (260)
T PRK10744 232 ELIEFGNTDTIF 243 (260)
T ss_pred EEEEeCCHHHHH
Confidence 999999988764
No 133
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-34 Score=301.75 Aligned_cols=190 Identities=24% Similarity=0.410 Sum_probs=163.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
||++ ||+++|+ ++ .+ |+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 1 ~l~~-~l~k~~~---------------~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g 59 (352)
T PRK11144 1 MLEL-NFKQQLG---------------DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK---GRIVLNG 59 (352)
T ss_pred CeEE-EEEEEeC---------------CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 4778 9999993 22 23 8999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCC
Q 006897 136 HQIKK------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVG 205 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~g 205 (627)
+++.+ ....++.+||++|+..+++.+||+||+.++.. ...+++++++++.+||++..++ ++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--------~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 131 (352)
T PRK11144 60 RVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA--------KSMVAQFDKIVALLGIEPLLDRYPGSLSG 131 (352)
T ss_pred EEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh--------hhhHHHHHHHHHHcCCchhhhCCcccCCH
Confidence 88632 12346789999999999999999999998642 1234678999999999876554 569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++.|+|+|++|||++ ++.++||++++|++|+++..
T Consensus 132 Gq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEe
Confidence 99999 999999999999999999998766899999999998 58899999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+++++..
T Consensus 211 g~~~~i~~ 218 (352)
T PRK11144 211 GPLEEVWA 218 (352)
T ss_pred cCHHHHHh
Confidence 99988753
No 134
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=291.06 Aligned_cols=197 Identities=20% Similarity=0.311 Sum_probs=165.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
||+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 ml~~~~l~~~~~---------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 62 (271)
T PRK13638 1 MLATSDLWFRYQ---------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK---GAVLWQG 62 (271)
T ss_pred CeEEEEEEEEcC---------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---cEEEECC
Confidence 488999999993 2459999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC----hhhhcccEEEEccCCCC-CCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK----PAQLRKICGFVAQEDNL-LPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~----~~~~r~~ig~v~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. ....++.+||++|++.+ +...|+.||+.+..... +...++..++++++++.+||.+..+ .++||
T Consensus 63 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 140 (271)
T PRK13638 63 KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL--GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHG 140 (271)
T ss_pred EEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHH
Confidence 88631 13456789999999752 33458999998864322 2344455677889999999976554 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|
T Consensus 141 ~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 141 QKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDID-LIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9998 9999999999999999999975 4899999999998 488899999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 219 ~~~~~~ 224 (271)
T PRK13638 219 APGEVF 224 (271)
T ss_pred CHHHHh
Confidence 988764
No 135
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-33 Score=283.56 Aligned_cols=197 Identities=24% Similarity=0.379 Sum_probs=168.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ .+.+++|+||++++||+++|+||||||||||+++|+|+++|.. |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~---G~i~~~g~ 62 (232)
T cd03300 1 IELENVSKFYG---------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS---GEILLDGK 62 (232)
T ss_pred CEEEeEEEEeC---------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCE
Confidence 46899999993 2469999999999999999999999999999999999999864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+|++||+.+....+ +......+++++++++.+||++..++ ++|||+||
T Consensus 63 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~ 140 (232)
T cd03300 63 DITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK--KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVA 140 (232)
T ss_pred EcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 86432234678999999999998899999998865432 22344556778999999999865554 55999988
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+.+++.
T Consensus 141 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 141 IARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999997655899999999998 488999999999999999999877653
No 136
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=305.78 Aligned_cols=208 Identities=23% Similarity=0.390 Sum_probs=180.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccceEEEC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ-DFDPRSITVN 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~-~~~~G~i~i~ 134 (627)
.|+++||++.|... ++...+++||||++++||++||+|+|||||||+.++|.|++++. ...+|+|.++
T Consensus 5 lL~V~nL~v~~~~~-----------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~ 73 (539)
T COG1123 5 LLEVENLTVEFATD-----------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILD 73 (539)
T ss_pred eEEEeceEEEEecC-----------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEEC
Confidence 79999999999533 23357999999999999999999999999999999999999876 3346999999
Q ss_pred CccCCC--h---hhhc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc------cc
Q 006897 135 CHQIKK--P---AQLR-KICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------VA 200 (627)
Q Consensus 135 g~~~~~--~---~~~r-~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~ 200 (627)
|+++.. . ..+| +.|+||||++ .+.|-+||.+.+.-....+.. .++++.++++.++|+.+||.+ ..
T Consensus 74 g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~-~~~~ea~~~a~elL~~Vgl~~~~~~~~yP 152 (539)
T COG1123 74 GRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK-GSRAEARKRAVELLEQVGLPDPERRDRYP 152 (539)
T ss_pred CcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHcCCCChhhhccCC
Confidence 997632 1 2233 6799999995 577889999999987766542 347889999999999999964 34
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
++++|||||| ||++||+..+.+|+++|+++.++.|+++|+||||+.. +.++||||+||++|
T Consensus 153 heLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~Vm~~G 231 (539)
T COG1123 153 HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231 (539)
T ss_pred cccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEEEECC
Confidence 5677999999 9999999999999999999999999999999999995 89999999999999
Q ss_pred eEEeeCCHHHHHHH
Q 006897 263 SVVHYGSLELLEET 276 (627)
Q Consensus 263 ~iv~~G~~~~~~~~ 276 (627)
++++.|+++++.+.
T Consensus 232 ~iVE~G~~~~i~~~ 245 (539)
T COG1123 232 EIVETGPTEEILSN 245 (539)
T ss_pred EEEEecCHHHHHhc
Confidence 99999999998654
No 137
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-33 Score=264.10 Aligned_cols=200 Identities=28% Similarity=0.480 Sum_probs=175.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
+++.+++++.+|+.+ ...+|+|+|++|.+||.++++||||||||||||+++|+.+|.. |+|.+|
T Consensus 2 ~~l~~~~~sl~y~g~-------------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~---G~i~l~ 65 (259)
T COG4525 2 CMLNVSHLSLSYEGK-------------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLN 65 (259)
T ss_pred ceeehhheEEecCCc-------------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCccc---ceEEEC
Confidence 367899999999532 2569999999999999999999999999999999999999975 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr 210 (627)
|+++..+. ..-|.|||++.++|.+|+.||++|+.++ .++++.++.+++.+.+..+||++..+++ +||+|||
T Consensus 66 ~r~i~gPg---aergvVFQ~~~LlPWl~~~dNvafgL~l--~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQR 140 (259)
T COG4525 66 GRRIEGPG---AERGVVFQNEALLPWLNVIDNVAFGLQL--RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR 140 (259)
T ss_pred CEeccCCC---ccceeEeccCccchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHH
Confidence 99875432 2249999999999999999999999765 4778899999999999999998877655 4999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC--CeEEeeCCH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR--GSVVHYGSL 270 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~ 270 (627)
|+++||.-+++.+-++|.++.++.|+.+++|||+.+ |..-+++|+++|+. |+|++.-++
T Consensus 141 vGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999999999999 57889999999985 799987776
Q ss_pred HHHHHH
Q 006897 271 ELLEET 276 (627)
Q Consensus 271 ~~~~~~ 276 (627)
+--.++
T Consensus 220 df~rR~ 225 (259)
T COG4525 220 DFARRY 225 (259)
T ss_pred CHHHHh
Confidence 633333
No 138
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.2e-33 Score=282.59 Aligned_cols=190 Identities=27% Similarity=0.382 Sum_probs=160.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~~--------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 63 (222)
T PRK10908 1 MIRFEHVSKAYLG--------------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSG 63 (222)
T ss_pred CEEEEeeEEEecC--------------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 4789999999931 2359999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. . ..+++.++|++|++.+++.+|++||+.+....+ +.+.++..++++++++.+|+.+..+ .++||
T Consensus 64 ~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 141 (222)
T PRK10908 64 HDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA--GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGG 141 (222)
T ss_pred EEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHH
Confidence 87632 1 125678999999998888899999999875432 2344455667889999999976544 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|+|| ||+|||+.++..+.+.|+++++ .|.|+|++||+++ ++.++||++++|++|+++.
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 142 EQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIG-LISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEcc
Confidence 9998 9999999999999999999976 4899999999998 4888999999999999864
No 139
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=285.77 Aligned_cols=200 Identities=20% Similarity=0.277 Sum_probs=164.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|...+.|+|.++|
T Consensus 2 ~~~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g 66 (246)
T PRK14269 2 IAKTTNLNLFYG---------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEG 66 (246)
T ss_pred ceeeeeeEEEEC---------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECC
Confidence 588999999993 24599999999999999999999999999999999999853112349999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc----c----cCCcCC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH----V----AGSFVG 205 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~----~~~~~g 205 (627)
+++.. ....++.++|+||++.+++ .|++||+.++...+......++.++++.++++.+||.+ . ...++|
T Consensus 67 ~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 145 (246)
T PRK14269 67 KDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG 145 (246)
T ss_pred EecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCH
Confidence 98643 2356778999999998887 59999999865332110122345567889999999942 2 234679
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|+++. + |+|+|++||+++ ++.++||++++|++|++++.
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEE
Confidence 99998 999999999999999999985 3 789999999998 48889999999999999999
Q ss_pred CCHHHHH
Q 006897 268 GSLELLE 274 (627)
Q Consensus 268 G~~~~~~ 274 (627)
|+++++.
T Consensus 223 g~~~~~~ 229 (246)
T PRK14269 223 GESKEFF 229 (246)
T ss_pred CCHHHHH
Confidence 9987764
No 140
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-33 Score=288.86 Aligned_cols=200 Identities=22% Similarity=0.333 Sum_probs=168.2
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|++++|++ ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++
T Consensus 6 ~~l~i~~l~~~~~~-------------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~ 69 (269)
T PRK13648 6 SIIVFKNVSFQYQS-------------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS---GEIFYN 69 (269)
T ss_pred ceEEEEEEEEEcCC-------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEEC
Confidence 37999999999942 12358999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
|+++.. ...+++.++|++|++. +++..|+.+|+.+..... +...++..++++++++.+|+.+..+ .++|||
T Consensus 70 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 147 (269)
T PRK13648 70 NQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH--AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQ 147 (269)
T ss_pred CEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc--CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHH
Confidence 988632 2456778999999974 677789999998875322 2344555677899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++. .|||+++|++|++++.|+
T Consensus 148 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~G~i~~~g~ 225 (269)
T PRK13648 148 KQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNKGTVYKEGT 225 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEECCEEEEecC
Confidence 998 999999999999999999997655899999999998 465 499999999999999999
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
++++.
T Consensus 226 ~~~~~ 230 (269)
T PRK13648 226 PTEIF 230 (269)
T ss_pred HHHHh
Confidence 88764
No 141
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=9.4e-34 Score=281.66 Aligned_cols=187 Identities=27% Similarity=0.425 Sum_probs=158.7
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~~--------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 63 (214)
T cd03292 1 IEFINVTKTYPN--------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS---GTIRVNGQ 63 (214)
T ss_pred CEEEEEEEEeCC--------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCE
Confidence 468999999931 1459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 137 QIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 137 ~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
++.. . ...++.++|++|++.+++.+|++||+.+....+ +...++.+++++++++.+||++..+ .++|||
T Consensus 64 ~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 141 (214)
T cd03292 64 DVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT--GVPPREIRKRVPAALELVGLSHKHRALPAELSGGE 141 (214)
T ss_pred EcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHH
Confidence 7632 1 235678999999999999899999999875432 2234555678899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++
T Consensus 142 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 142 QQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 998 9999999999999999999975 4899999999998 47889999999999974
No 142
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.5e-34 Score=285.20 Aligned_cols=193 Identities=22% Similarity=0.370 Sum_probs=160.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|.+ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (230)
T TIGR03410 1 LEVSNLNVYYG---------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGE 62 (230)
T ss_pred CEEEeEEEEeC---------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCE
Confidence 47899999993 2469999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--hh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-Cccc----cCCcCCccc
Q 006897 137 QIKK--PA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG-LTHV----AGSFVGDEE 208 (627)
Q Consensus 137 ~~~~--~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~----~~~~~gGe~ 208 (627)
++.. .. ..++.++|++|++.+++.+|+.||+.++...+ +.. ..+.++++++.++ +.+. ...++|||+
T Consensus 63 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~ 137 (230)
T TIGR03410 63 DITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL--PRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQ 137 (230)
T ss_pred ECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc--Ccc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHH
Confidence 8632 12 23567999999999999999999999875432 111 1234566677665 4443 345679999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+.
T Consensus 138 qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~ 216 (230)
T TIGR03410 138 QQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAG 216 (230)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 98 999999999999999999997655899999999998 58889999999999999999998
Q ss_pred HHH
Q 006897 271 ELL 273 (627)
Q Consensus 271 ~~~ 273 (627)
+++
T Consensus 217 ~~~ 219 (230)
T TIGR03410 217 DEL 219 (230)
T ss_pred HHc
Confidence 876
No 143
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.7e-33 Score=284.31 Aligned_cols=197 Identities=24% Similarity=0.424 Sum_probs=167.7
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. |+|.++|.
T Consensus 1 i~i~~l~~~~~---------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~i~g~ 62 (237)
T TIGR00968 1 IEIANISKRFG---------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS---GRIRLNGQ 62 (237)
T ss_pred CEEEEEEEEEC---------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCE
Confidence 47899999993 2359999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+|+.||+.+....+ +.......++++++++.+++.+..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~ 140 (237)
T TIGR00968 63 DATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR--KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVA 140 (237)
T ss_pred EcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH
Confidence 86432334678999999999999899999999865432 2233445577899999999976554 456999988
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
|++|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+.+++.
T Consensus 141 laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 141 LARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999987655899999999998 588999999999999999999988764
No 144
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=288.22 Aligned_cols=201 Identities=24% Similarity=0.342 Sum_probs=165.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
..|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|.. .+.|+|.
T Consensus 18 ~~l~~~nl~~~~~---------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~ 82 (267)
T PRK14235 18 IKMRARDVSVFYG---------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKIT 82 (267)
T ss_pred ceEEEEeEEEEEC---------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE
Confidence 4799999999993 2459999999999999999999999999999999999987510 1249999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
++|+++.. ...+++.++|++|++.+++. ||.||+.++...+....++.+..+++.++++.+||.+ ..
T Consensus 83 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 161 (267)
T PRK14235 83 LDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPG 161 (267)
T ss_pred ECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCc
Confidence 99988632 23457789999999988875 9999999875432111123445677899999999953 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|
T Consensus 162 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~-~~~~~~d~v~~l~~G 238 (267)
T PRK14235 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQ-QAARVSQRTAFFHLG 238 (267)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHH-HHHhhCCEEEEEECC
Confidence 4567999998 9999999999999999999963 689999999998 488999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 239 ~i~~~g~~~~~~ 250 (267)
T PRK14235 239 NLVEVGDTEKMF 250 (267)
T ss_pred EEEEeCCHHHHH
Confidence 999999987663
No 145
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.1e-33 Score=280.99 Aligned_cols=187 Identities=28% Similarity=0.492 Sum_probs=158.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (213)
T cd03262 1 IEIKNLHKSFG---------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTIIIDGL 62 (213)
T ss_pred CEEEEEEEEEC---------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCE
Confidence 47899999993 2459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 137 QIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 137 ~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
++.. ....++.++|++|++.+++.+|+.||+.++.... .+...++.+++++++++.+|+++..+ .++|||+
T Consensus 63 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 141 (213)
T cd03262 63 KLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV-KGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQ 141 (213)
T ss_pred ECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh-cCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHH
Confidence 8631 2345778999999999998899999998864211 12234455677899999999976544 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++
T Consensus 142 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 142 QRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 98 9999999999999999999976 5899999999998 58889999999999974
No 146
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=285.66 Aligned_cols=193 Identities=28% Similarity=0.416 Sum_probs=164.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 64 (241)
T PRK14250 3 EIEFKEVSYSSF---------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE---GSILIDG 64 (241)
T ss_pred eEEEEeEEEEeC---------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 589999999993 2359999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCcCCccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~~gGe~ 208 (627)
+++.. ....++.++|++|++.+++ .|++||+.+....+ + ...+++.++++.+||+ +.. ..++|||+
T Consensus 65 ~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 137 (241)
T PRK14250 65 VDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK--G----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEA 137 (241)
T ss_pred EEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc--C----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 88632 3456778999999998887 59999998754221 1 1235688899999996 343 35679999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|++++.|++
T Consensus 138 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 216 (241)
T PRK14250 138 QRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKT 216 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCH
Confidence 98 999999999999999999997656899999999998 48889999999999999999998
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 217 ~~~~ 220 (241)
T PRK14250 217 YDFF 220 (241)
T ss_pred HHHh
Confidence 7763
No 147
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.8e-33 Score=279.64 Aligned_cols=190 Identities=25% Similarity=0.427 Sum_probs=160.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
++++||++.|+ .+++|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 ~~~~~l~~~~~-----------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 60 (213)
T TIGR01277 1 LALDKVRYEYE-----------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPAS---GSIKVNDQ 60 (213)
T ss_pred CeEEeeeEEeC-----------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCE
Confidence 47899999993 14689999999999999999999999999999999999864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++.+....++.++|++|++.+++.+|+.||+.+...... . .+.+.+++++++++.+||++..+ .++|||+||
T Consensus 61 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 138 (213)
T TIGR01277 61 SHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL-K-LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVA 138 (213)
T ss_pred EcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC-C-ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHH
Confidence 864333456789999999999998999999987642211 1 12234567889999999976554 456999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
||+|||+.++..+.+.|+++.++.|.|||++||+++ ++.++||++++|++|++++.|+
T Consensus 139 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 139 LARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999997656899999999998 4788999999999999998875
No 148
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.7e-33 Score=281.21 Aligned_cols=191 Identities=27% Similarity=0.436 Sum_probs=158.2
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+++ .+.+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 2 l~~~~v~~~~~~~-----------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~ 67 (221)
T TIGR02211 2 LKCENLGKRYQEG-----------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS---GEVLFNGQ 67 (221)
T ss_pred EEEEeeeEEccCC-----------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCE
Confidence 7899999999421 112469999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hh---hhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 137 QIKK--PA---QLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 137 ~~~~--~~---~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
++.. .. .++ +.++|++|++.+++.+|++||+.+....+ .....+..+++.++++.+||++..+ .++||
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 145 (221)
T TIGR02211 68 SLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG--KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGG 145 (221)
T ss_pred EhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHH
Confidence 8632 11 123 67999999999998899999999865332 2233445667889999999976544 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
|+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++ +.+|++++|++|+++
T Consensus 146 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9998 999999999999999999997656899999999998 35 458999999999975
No 149
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-33 Score=285.84 Aligned_cols=200 Identities=21% Similarity=0.316 Sum_probs=165.2
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~ 132 (627)
.+|+++|+++.|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++ |...+.|+|.
T Consensus 11 ~~l~i~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~ 75 (259)
T PRK14274 11 EVYQINGMNLWYG---------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN 75 (259)
T ss_pred ceEEEeeEEEEEC---------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEE
Confidence 4799999999993 2459999999999999999999999999999999999987 3211249999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
++|+++.. ....++.+||++|++.+++. ||+||+.+...... ...+++..++++++++.+|+.+ ..
T Consensus 76 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~ 153 (259)
T PRK14274 76 YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG-TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA 153 (259)
T ss_pred ECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc
Confidence 99988631 23456789999999988885 99999988653321 1123455667888999998842 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|++++ + ++|+|++||+++ ++.++|||+++|++|
T Consensus 154 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~i~~l~~G 230 (259)
T PRK14274 154 LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQ-QAARVSDQTAFFYMG 230 (259)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHH-HHHHhCCEEEEEECC
Confidence 4567999998 999999999999999999985 3 689999999998 588999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
+++..|+++++.
T Consensus 231 ~i~~~g~~~~~~ 242 (259)
T PRK14274 231 ELVECNDTNKMF 242 (259)
T ss_pred EEEEECCHHHHh
Confidence 999999998764
No 150
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.3e-33 Score=286.74 Aligned_cols=198 Identities=22% Similarity=0.354 Sum_probs=165.1
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|+
T Consensus 2 l~~~~l~~~~~---------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~ 63 (256)
T TIGR03873 2 LRLSRVSWSAG---------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGV 63 (256)
T ss_pred ceEEeEEEEEC---------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCE
Confidence 68999999993 2469999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR--LKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~--~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
++.. ....++.++|++|++.+++.+||.||+.++.... ......++..+++.++++.+|+.+..+ .++|||+
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 143 (256)
T TIGR03873 64 DLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGER 143 (256)
T ss_pred EcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 8632 2345667999999987777889999998853110 001112334567899999999976554 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+.
T Consensus 144 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 144 QRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPP 221 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCH
Confidence 98 9999999999999999999975 4899999999998 48899999999999999999998
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 222 ~~~~ 225 (256)
T TIGR03873 222 REVL 225 (256)
T ss_pred HHhh
Confidence 7753
No 151
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7.4e-34 Score=280.63 Aligned_cols=182 Identities=26% Similarity=0.460 Sum_probs=152.2
Q ss_pred EEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+++||+++|+. .+.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|++
T Consensus 1 ~~~~l~~~~~~--------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~ 63 (205)
T cd03226 1 RIENISFSYKK--------------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---GSILLNGKP 63 (205)
T ss_pred CcccEEEEeCC--------------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEE
Confidence 36899999931 1459999999999999999999999999999999999999864 999999988
Q ss_pred CCChhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC--
Q 006897 138 IKKPAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR-- 210 (627)
Q Consensus 138 ~~~~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr-- 210 (627)
+.. ...++.+||++|++. .+..+|++||+.++.... + +..++++++++.+||++..++ ++|||+||
T Consensus 64 ~~~-~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~--~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 136 (205)
T cd03226 64 IKA-KERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL--D----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLA 136 (205)
T ss_pred hhh-HHhhcceEEEecChhhhhhhccHHHHHhhhhhhc--C----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHH
Confidence 532 445678999999974 234579999998864321 1 123568899999999876554 56999999
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+++
T Consensus 137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999999999976 4899999999998 478899999999999874
No 152
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-33 Score=281.71 Aligned_cols=196 Identities=27% Similarity=0.407 Sum_probs=167.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|+++.|. . ++|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|.
T Consensus 1 l~~~~l~~~~~---------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~---G~v~i~g~ 61 (235)
T cd03299 1 LKVENLSKDWK---------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS---GKILLNGK 61 (235)
T ss_pred CeeEeEEEEeC---------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCE
Confidence 46899999993 2 27999999999999999999999999999999999999864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++......++.++|++|++.+++.+|+.||+.+..... +....+.++++.++++.+||.+..+ .++|||+||
T Consensus 62 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 139 (235)
T cd03299 62 DITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR--KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVA 139 (235)
T ss_pred EcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHH
Confidence 86432234678999999999998899999998865322 2234556677889999999976554 456999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
||+|||+.+++.+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 140 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 140 IARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999997655899999999998 478899999999999999999987653
No 153
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-33 Score=283.72 Aligned_cols=200 Identities=24% Similarity=0.367 Sum_probs=166.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~i 133 (627)
.|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |...+.|+|.+
T Consensus 4 ~l~~~nl~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 68 (252)
T PRK14256 4 KVKLEQLNVHFG---------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILL 68 (252)
T ss_pred EEEEEEEEEEeC---------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEE
Confidence 589999999993 2359999999999999999999999999999999999986 42113499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++.. ...+++.++|+||++.+++.+|+.||+.++..... .....+.+++++++++.+|+.+ ...
T Consensus 69 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 147 (252)
T PRK14256 69 DDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG-RVNRSEADEIVESSLKRVALWDEVKDRLKSNAM 147 (252)
T ss_pred CCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcC
Confidence 9988632 23467789999999999998999999987643221 1233445667899999999853 234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~~l~~G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQ-QAARVSDYTAFFYMGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHH-HHHhhCCEEEEEECCE
Confidence 567999998 9999999999999999999964 589999999998 5889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 225 i~~~~~~~~~~ 235 (252)
T PRK14256 225 LVECGETKKIF 235 (252)
T ss_pred EEEeCCHHHHH
Confidence 99999987763
No 154
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.8e-33 Score=302.92 Aligned_cols=214 Identities=27% Similarity=0.390 Sum_probs=179.7
Q ss_pred CcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE
Q 006897 53 TTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132 (627)
Q Consensus 53 ~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~ 132 (627)
..+.++++||++.|..+... + ....+..++++||||++++||++||+|+||||||||.|+|+|+++|++ |+|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~---~-~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~---G~i~ 349 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGL---F-VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSII 349 (539)
T ss_pred cCceeEeeeeeeeecccccc---c-cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEE
Confidence 35679999999999643210 0 011245679999999999999999999999999999999999999954 9999
Q ss_pred ECCccC--C--ChhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc----C
Q 006897 133 VNCHQI--K--KPAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA----G 201 (627)
Q Consensus 133 i~g~~~--~--~~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~----~ 201 (627)
++|.+. . +....|+.+-+||||+ .+.|.+||+++|......+... ..++.++++.++++.+||.. .. +
T Consensus 350 ~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~-~~~~~~~rv~~ll~~VgL~~~~l~ryP~ 428 (539)
T COG1123 350 FDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG-SGAERRARVAELLELVGLPPEFLDRYPH 428 (539)
T ss_pred EeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc-chHHHHHHHHHHHHHcCCCHHHHhcCch
Confidence 999873 1 1245677899999985 6899999999999987654322 35677788999999999975 33 4
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||||| |+|.||+..+.+++++|+++.++.|.|.|+||||++. +..+||||++|++|+
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~G~ 507 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYDGR 507 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEECCe
Confidence 566999999 9999999999999999999999999999999999995 899999999999999
Q ss_pred EEeeCCHHHHHH
Q 006897 264 VVHYGSLELLEE 275 (627)
Q Consensus 264 iv~~G~~~~~~~ 275 (627)
|++.|+.+++.+
T Consensus 508 iVE~G~~~~v~~ 519 (539)
T COG1123 508 IVEEGPTEKVFE 519 (539)
T ss_pred EEEeCCHHHHhc
Confidence 999998887743
No 155
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.2e-33 Score=287.29 Aligned_cols=208 Identities=20% Similarity=0.346 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|..+.. ....+.+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~------~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g 74 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG------WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDD 74 (267)
T ss_pred eEEEeceEEEecCCCC------cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---CEEEECC
Confidence 6999999999942100 000013469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCcCCc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSFVGD 206 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~~gG 206 (627)
+++.. ....++.++|++|++. +++.+|+.|++.+...... ....++..++++++++.+||. +.. ..++||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 153 (267)
T PRK15112 75 HPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT-DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPG 153 (267)
T ss_pred EECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHH
Confidence 88632 2234567999999974 5678899999988654321 223445567789999999994 433 456799
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9998 999999999999999999998756899999999998 588899999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 233 ~~~~~~ 238 (267)
T PRK15112 233 STADVL 238 (267)
T ss_pred CHHHHh
Confidence 887664
No 156
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.3e-33 Score=299.13 Aligned_cols=190 Identities=23% Similarity=0.427 Sum_probs=162.7
Q ss_pred eEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC
Q 006897 61 NLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK 140 (627)
Q Consensus 61 nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~ 140 (627)
||+++|+ ++. + |+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++..
T Consensus 4 ~l~~~~~---------------~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~i~~ 63 (354)
T TIGR02142 4 RFSKRLG---------------DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFD 63 (354)
T ss_pred EEEEEEC---------------CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECcc
Confidence 8899993 223 4 9999999999999999999999999999999999864 999999988632
Q ss_pred h------hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC
Q 006897 141 P------AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR 210 (627)
Q Consensus 141 ~------~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr 210 (627)
. ...++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+||++..++ ++|||+||
T Consensus 64 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqR 139 (354)
T TIGR02142 64 SRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQR 139 (354)
T ss_pred CccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 1 235678999999999999999999999875321 223455678999999999876654 56999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++|+++..|++++
T Consensus 140 valAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (354)
T TIGR02142 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAE 218 (354)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHH
Confidence 999999999999999999998766899999999998 5889999999999999999999987
Q ss_pred HHH
Q 006897 273 LEE 275 (627)
Q Consensus 273 ~~~ 275 (627)
+..
T Consensus 219 ~~~ 221 (354)
T TIGR02142 219 VWA 221 (354)
T ss_pred Hhc
Confidence 753
No 157
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-33 Score=287.68 Aligned_cols=201 Identities=24% Similarity=0.360 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+.+. ...+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g 68 (280)
T PRK13649 2 GINLQNVSYTYQAGT----------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ---GSVRVDD 68 (280)
T ss_pred eEEEEEEEEEcCCCC----------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 489999999994210 011359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc----CC
Q 006897 136 HQIKK------PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA----GS 202 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~----~~ 202 (627)
+++.. ...+++.++|++|++ .+++ .||+||+.+..... +.+.++.+++++++++.+||.+ .. ..
T Consensus 69 ~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 145 (280)
T PRK13649 69 TLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF--GVSQEEAEALAREKLALVGISESLFEKNPFE 145 (280)
T ss_pred EEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCChhhhhCCccc
Confidence 87632 134667899999996 4555 69999999865322 2234555677889999999963 33 45
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++
T Consensus 146 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i 223 (280)
T PRK13649 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMD-DVANYADFVYVLEKGKL 223 (280)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHH-HHHHhCCEEEEEECCEE
Confidence 67999998 9999999999999999999976 4899999999998 48889999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 224 ~~~g~~~~~~ 233 (280)
T PRK13649 224 VLSGKPKDIF 233 (280)
T ss_pred EEeCCHHHHh
Confidence 9999988764
No 158
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-33 Score=284.46 Aligned_cols=200 Identities=20% Similarity=0.352 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
.|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. .++|+|.+
T Consensus 4 ~l~i~~v~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~ 68 (258)
T PRK14241 4 RIDVKDLNIYYG---------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL 68 (258)
T ss_pred cEEEeeEEEEEC---------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE
Confidence 689999999993 2359999999999999999999999999999999999987521 12499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----cc----cC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----HV----AG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~----~~ 201 (627)
+|+++.. ...+++.++|++|++.+++.+||+||+.++...+. ..++++.+++++++++.+||. +. ..
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 147 (258)
T PRK14241 69 DGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG-VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGG 147 (258)
T ss_pred CCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcc
Confidence 9987521 23567789999999999998999999998754321 113445567789999999883 22 34
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec---
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS--- 260 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--- 260 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~-~~~~~~d~i~~l~~~~ 224 (258)
T PRK14241 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQ-QAARVSDQTAFFNLEA 224 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhCCEEEEEeccc
Confidence 567999998 9999999999999999999953 589999999998 4889999999996
Q ss_pred ---CCeEEeeCCHHHHH
Q 006897 261 ---RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ---~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 225 ~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 225 TGKPGRLVEIDDTEKIF 241 (258)
T ss_pred CCCCceEEecCCHHHHH
Confidence 79999999988764
No 159
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.8e-33 Score=280.15 Aligned_cols=195 Identities=26% Similarity=0.405 Sum_probs=161.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+.+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++
T Consensus 5 ~~l~~~~l~~~~~~~~-----------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~ 70 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE-----------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLV 70 (228)
T ss_pred ceEEEeeeEEEccCCC-----------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eeEEEC
Confidence 3799999999994210 11359999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--hh---hh-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcC
Q 006897 135 CHQIKK--PA---QL-RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFV 204 (627)
Q Consensus 135 g~~~~~--~~---~~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~ 204 (627)
|+++.. .. .. ++.++|++|++.+++.+|+.||+.+....+ +...++.++++.++++.+||.+..+ .++
T Consensus 71 g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 148 (228)
T PRK10584 71 GQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSRNGAKALLEQLGLGKRLDHLPAQLS 148 (228)
T ss_pred CEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCC
Confidence 987632 11 12 357999999999999899999998865332 2234456678999999999976544 456
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|||+|| ||+|||+.++..+.+.|++++++.|.|||++|||++ .+ +.||++++|++|++++
T Consensus 149 ~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 149 GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 999998 999999999999999999997666899999999998 35 5699999999999875
Q ss_pred e
Q 006897 267 Y 267 (627)
Q Consensus 267 ~ 267 (627)
.
T Consensus 227 ~ 227 (228)
T PRK10584 227 E 227 (228)
T ss_pred c
Confidence 3
No 160
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-33 Score=282.60 Aligned_cols=198 Identities=26% Similarity=0.362 Sum_probs=163.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~i 133 (627)
+|+++||+++|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |+..+.|+|.+
T Consensus 5 ~l~~~~l~~~~~---------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~ 69 (252)
T PRK14239 5 ILQVSDLSVYYN---------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVY 69 (252)
T ss_pred eEEEEeeEEEEC---------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEE
Confidence 699999999993 2359999999999999999999999999999999999854 53112499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
+|+++.. ...+++.++|++|++.+++ +||+||+.++.... +. ..+..++++.++++.+++.+ ..
T Consensus 70 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 146 (252)
T PRK14239 70 NGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK--GIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA 146 (252)
T ss_pred CCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc
Confidence 9988632 2345678999999998887 79999999875332 22 23344567888999998732 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.++|+++++ ++|||++||+++ ++.++|||+++|++|
T Consensus 147 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~G 223 (252)
T PRK14239 147 LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQ-QASRISDRTGFFLDG 223 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHH-HHHHhCCEEEEEECC
Confidence 4567999998 9999999999999999999863 589999999998 588999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 224 ~i~~~g~~~~~~ 235 (252)
T PRK14239 224 DLIEYNDTKQMF 235 (252)
T ss_pred EEEEeCCHHHHH
Confidence 999999988763
No 161
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-33 Score=289.92 Aligned_cols=202 Identities=21% Similarity=0.377 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+.+. .....+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 6 ~l~i~nl~~~~~~~~----------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 72 (289)
T PRK13645 6 DIILDNVSYTYAKKT----------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET---GQTIVGD 72 (289)
T ss_pred eEEEEEEEEEeCCCC----------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECC
Confidence 589999999994210 001359999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC-------hhhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----C
Q 006897 136 HQIKK-------PAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----G 201 (627)
Q Consensus 136 ~~~~~-------~~~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~ 201 (627)
+++.. ...+++.++|++|++. +++ .|++||+.++.... +...++..++++++++.++|. +.. .
T Consensus 73 ~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~ 149 (289)
T PRK13645 73 YAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL--GENKQEAYKKVPELLKLVQLPEDYVKRSPF 149 (289)
T ss_pred EEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCChhHhcCChh
Confidence 87521 2346778999999963 444 59999999865321 223445566788999999994 444 4
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|+
T Consensus 150 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~ 228 (289)
T PRK13645 150 ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGK 228 (289)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 566999999 999999999999999999997656899999999998 5889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 229 i~~~g~~~~~~ 239 (289)
T PRK13645 229 VISIGSPFEIF 239 (289)
T ss_pred EEEeCCHHHHh
Confidence 99999988764
No 162
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=8e-34 Score=322.26 Aligned_cols=193 Identities=24% Similarity=0.431 Sum_probs=164.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++||+|+|... +..+|+|+|++|++||.+||+|+||||||||+|+|+|+++|.. |+|.+|
T Consensus 470 g~I~~~nvsf~y~~~-------------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~---G~I~~d 533 (709)
T COG2274 470 GEIEFENVSFRYGPD-------------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLD 533 (709)
T ss_pred ceEEEEEEEEEeCCC-------------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEEC
Confidence 369999999999532 2369999999999999999999999999999999999999975 999999
Q ss_pred CccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc------------
Q 006897 135 CHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------ 200 (627)
Q Consensus 135 g~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------ 200 (627)
|.|+. +...+|++||||+||+.+|.+ |++||+.++. +.. ..+++.++++..|.++..
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p~~----~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN----PEA----TDEEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC----CCC----CHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 99973 467899999999999999987 9999999863 221 234556666666654432
Q ss_pred ---CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 201 ---GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 201 ---~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
..++|||||| |||+||+.+++.+.+.|.++. .|+|+|+++|+++ ..+.||||++|
T Consensus 605 E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~--ti~~adrIiVl 680 (709)
T COG2274 605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLS--TIRSADRIIVL 680 (709)
T ss_pred cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccch--HhhhccEEEEc
Confidence 3456999999 899999999999999999986 4799999999997 57899999999
Q ss_pred cCCeEEeeCCHHHHHHH
Q 006897 260 SRGSVVHYGSLELLEET 276 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~~ 276 (627)
++|+++++|+.+++.+.
T Consensus 681 ~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 681 DQGKIVEQGSHEELLAQ 697 (709)
T ss_pred cCCceeccCCHHHHHHh
Confidence 99999999999998764
No 163
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-33 Score=282.71 Aligned_cols=199 Identities=25% Similarity=0.361 Sum_probs=164.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC---CCCCCCccceE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR---VRDQDFDPRSI 131 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl---~~~~~~~~G~i 131 (627)
++|+++|+++.|+ .+.+|+|+||++++||+++|+||||||||||+|+|+|+ .++. .+.|+|
T Consensus 2 ~~l~~~~~~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i 65 (250)
T PRK14245 2 VKIDARDVNFWYG---------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEI 65 (250)
T ss_pred cEEEEEEEEEEEC---------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEE
Confidence 3799999999993 24599999999999999999999999999999999997 3432 124999
Q ss_pred EECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc----c----
Q 006897 132 TVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH----V---- 199 (627)
Q Consensus 132 ~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~---- 199 (627)
.++|+++.. ....++.++|+||++.+++ .|+.||+.++...+. ....+..+++++++++.+||.+ .
T Consensus 66 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14245 66 RIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG-VKDNAFIRQRVEETLKGAALWDEVKDKLKES 143 (250)
T ss_pred EECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHcCCCcchhhhhhCC
Confidence 999988632 2345678999999998887 599999998754321 1123345567889999999853 2
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
...++|||+|| ||+|||+.++..+.+.|+++. + ++|||++||+++ ++.++|||+++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~v~~l~~ 220 (250)
T PRK14245 144 AFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQ-QAARVSDKTAFFYM 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhCCEEEEEEC
Confidence 24567999998 999999999999999999994 3 689999999998 48899999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 221 G~~~~~~~~~~~~ 233 (250)
T PRK14245 221 GEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEECCHHHHh
Confidence 9999999998774
No 164
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-34 Score=304.09 Aligned_cols=191 Identities=25% Similarity=0.433 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++||+|+|+++ ..++|+|+||++++||.+||+|+||||||||+++|+|.++|++ |+|++||
T Consensus 336 ~l~~~~vsF~y~~~-------------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~---G~i~~~g 399 (573)
T COG4987 336 ALELRNVSFTYPGQ-------------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ---GSITLNG 399 (573)
T ss_pred eeeeccceeecCCC-------------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC---CeeeECC
Confidence 69999999999643 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG------------ 201 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------------ 201 (627)
.++.. ++.+|+.+++++|..++|.+ |++|||.++. ++..++.+.++++++||++...
T Consensus 400 ~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~--------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge 470 (573)
T COG4987 400 VEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLAN--------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGE 470 (573)
T ss_pred cChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcC--------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhcc
Confidence 98743 45588999999999999987 9999999863 1234567889999999976432
Q ss_pred ---CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 202 ---SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 202 ---~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
+++|||+|| ||.|||+.++++++++|.+.+ +|+|+|++||++.. .+.||||++|+
T Consensus 471 ~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~~--le~~drIivl~ 546 (573)
T COG4987 471 GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRG--LERMDRIIVLD 546 (573)
T ss_pred CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEeccccc--HhhcCEEEEEE
Confidence 345999999 999999999999999999876 48999999999984 67899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|+++++|+++++.+
T Consensus 547 ~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 547 NGKIIEEGTHAELLA 561 (573)
T ss_pred CCeeeecCCHHhhhc
Confidence 999999999998865
No 165
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-33 Score=287.57 Aligned_cols=200 Identities=21% Similarity=0.345 Sum_probs=168.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+ ..+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. |+|.++|
T Consensus 4 ~l~~~~l~~~~~~~------------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 68 (277)
T PRK13642 4 ILEVENLVFKYEKE------------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE---GKVKIDG 68 (277)
T ss_pred eEEEEEEEEEcCCC------------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECC
Confidence 69999999999421 12358999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
+++.. ....++.+||++|++. +++..||.||+.++... .+..+++..++++++++.+||.+..+ +++|||+
T Consensus 69 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 146 (277)
T PRK13642 69 ELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMEN--QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQK 146 (277)
T ss_pred EECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHH--cCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHH
Confidence 88642 2356788999999974 56678999999886532 12344555678899999999976654 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+.+.|++++++.|+|||++||+++. +. .||++++|++|++++.|++
T Consensus 147 qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~~ 224 (277)
T PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAAP 224 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCCH
Confidence 98 9999999999999999999987668999999999984 54 6999999999999999998
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 225 ~~~~ 228 (277)
T PRK13642 225 SELF 228 (277)
T ss_pred HHHh
Confidence 8764
No 166
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.3e-33 Score=278.35 Aligned_cols=186 Identities=26% Similarity=0.484 Sum_probs=154.6
Q ss_pred EEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+++|++++|+. ..+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++
T Consensus 1 ~~~~l~~~~~~-------------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~ 64 (211)
T cd03225 1 ELKNLSFSYPD-------------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS---GEVLVDGKD 64 (211)
T ss_pred CceeEEEecCC-------------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEE
Confidence 36899999942 11469999999999999999999999999999999999998864 999999987
Q ss_pred CCC--hhhhcccEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----CCcCCccccC
Q 006897 138 IKK--PAQLRKICGFVAQEDN-LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----GSFVGDEENR 210 (627)
Q Consensus 138 ~~~--~~~~r~~ig~v~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~qr 210 (627)
+.. ....++.++|++|++. .++.+|++||+.+..... +...++.+++++++++.+||++.. ..++|||+||
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 142 (211)
T cd03225 65 LTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL--GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQR 142 (211)
T ss_pred cccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence 632 2446678999999974 356789999998865322 223444566789999999997544 4566999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|+
T Consensus 143 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999765 899999999998 5888999999999985
No 167
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=304.10 Aligned_cols=191 Identities=25% Similarity=0.438 Sum_probs=164.8
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++.+|+++.|+++ +++++|+||++++|+.+||+|+||||||||+++|+|+.+|+. |+|.+|
T Consensus 319 ~ei~~~~l~~~y~~g--------------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~---G~I~vn 381 (559)
T COG4988 319 IEISLENLSFRYPDG--------------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVN 381 (559)
T ss_pred ceeeecceEEecCCC--------------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEEC
Confidence 356777999999532 369999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----------
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS---------- 202 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------- 202 (627)
|.+..+ ...+|++++||+|++.+|+. |++||+.++. .+..++.+.+++++.||.+..+.
T Consensus 382 g~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~--------~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 382 GIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLAR--------PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred CccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccC--------CcCCHHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 998743 56799999999999999987 9999999862 12335667888888887655433
Q ss_pred ----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 203 ----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 203 ----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
++|||+|| ||++||.++++.|.+.|.++++ ++|+|++||++. ...-+|+|++|+
T Consensus 453 ~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChH--HHhcCCEEEEec
Confidence 45899999 9999999999999999999985 589999999997 467799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 529 ~G~l~~~g~~~~L~~ 543 (559)
T COG4988 529 NGRLVEQGTHEELSE 543 (559)
T ss_pred CCceeccCCHHHHhh
Confidence 999999999998854
No 168
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-33 Score=281.67 Aligned_cols=199 Identities=23% Similarity=0.354 Sum_probs=164.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
++|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. .+.|+|.
T Consensus 3 ~~l~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~ 67 (251)
T PRK14270 3 IKMESKNLNLWYG---------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL 67 (251)
T ss_pred cEEEEEEeEEEEC---------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEE
Confidence 4799999999993 2459999999999999999999999999999999999987510 1249999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCcc--------c
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTH--------V 199 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~--------~ 199 (627)
++|+++.. ....++.+||++|++.+++ +|++||+.+..... +. ..++..++++++++.+||.+ .
T Consensus 68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 144 (251)
T PRK14270 68 LDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIH--GIKDKKELDKIVEWALKKAALWDEVKDDLKKS 144 (251)
T ss_pred ECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhc--CCCcHHHHHHHHHHHHHHcCCchhhhhHhhCC
Confidence 99988632 1245678999999998887 89999999875332 22 23455667888999998732 2
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
...++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++|||+++|++
T Consensus 145 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~d~v~~l~~ 221 (251)
T PRK14270 145 ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQ-QASRVSDYTAFFLM 221 (251)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHH-HHHHhcCEEEEEEC
Confidence 34567999998 9999999999999999999864 589999999998 58899999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 222 G~i~~~~~~~~~~ 234 (251)
T PRK14270 222 GDLIEFNKTEKIF 234 (251)
T ss_pred CeEEEeCCHHHHh
Confidence 9999999988763
No 169
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=5.7e-33 Score=281.47 Aligned_cols=198 Identities=23% Similarity=0.321 Sum_probs=162.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCccceEEEC
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQDFDPRSITVN 134 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~~~~G~i~i~ 134 (627)
|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|+ +|+|.++
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~ 62 (243)
T TIGR01978 1 LKIKDLHVSVE---------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFK 62 (243)
T ss_pred CeEeeEEEEEC---------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEEC
Confidence 47899999993 245999999999999999999999999999999999995 454 3999999
Q ss_pred CccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHHHcCCc-ccc----C
Q 006897 135 CHQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLK-----GMSHKEKEDRVESLMDELGLT-HVA----G 201 (627)
Q Consensus 135 g~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~-~~~----~ 201 (627)
|+++.. ... .+..++|++|++.+++.+|+.||+.+....... ..+.++..+++.++++.+||. +.. .
T Consensus 63 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 63 GQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc
Confidence 987532 222 234599999999999999999999886432110 012234456789999999996 332 2
Q ss_pred -CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hhhheeecC
Q 006897 202 -SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-ISKFLILSR 261 (627)
Q Consensus 202 -~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D~i~vL~~ 261 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++ ||++++|++
T Consensus 143 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~-~~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 143 EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQR-LLNYIKPDYVHVLLD 220 (243)
T ss_pred cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHH-HHHhhcCCeEEEEeC
Confidence 377999998 9999999999999999999975 5899999999998 47777 899999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (243)
T TIGR01978 221 GRIVKSGDVELAK 233 (243)
T ss_pred CEEEEecCHHHhc
Confidence 9999999987654
No 170
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-33 Score=285.17 Aligned_cols=200 Identities=20% Similarity=0.341 Sum_probs=163.3
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSI 131 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i 131 (627)
..+|+++||+++|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|++++.. .+.|+|
T Consensus 11 ~~~l~i~nl~~~~~---------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v 75 (269)
T PRK14259 11 NIIISLQNVTISYG---------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV 75 (269)
T ss_pred CceEEEEeEEEEEC---------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 45799999999993 2459999999999999999999999999999999999987310 134999
Q ss_pred EECCccCC----ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----c----c
Q 006897 132 TVNCHQIK----KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----H----V 199 (627)
Q Consensus 132 ~i~g~~~~----~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~----~ 199 (627)
.++|+++. +...+++.++|++|++.+++. ||+||+.+.+..+ +.. .+.++++.++++.+++. + .
T Consensus 76 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~ 151 (269)
T PRK14259 76 LFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN--GYT-GDMDELVERSLRKAAVWDECKDKLNES 151 (269)
T ss_pred EECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc--CCc-HHHHHHHHHHHHHhCCcchhhhhhCCC
Confidence 99998753 124567789999999988884 9999999875432 222 23456678888888763 2 2
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
...++|||+|| ||+|||+.++..+.++|++++ + ++|||++||+++ ++.++||++++|++
T Consensus 152 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~i~~l~~ 228 (269)
T PRK14259 152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQ-QAVRVSDMTAFFNA 228 (269)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhcCEEEEEec
Confidence 34567999998 999999999999999999985 3 689999999998 58899999999996
Q ss_pred -----------CeEEeeCCHHHHHH
Q 006897 262 -----------GSVVHYGSLELLEE 275 (627)
Q Consensus 262 -----------G~iv~~G~~~~~~~ 275 (627)
|++++.|+++++.+
T Consensus 229 ~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 229 EEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred cccccccccccceEEEeCCHHHHHh
Confidence 67899999988753
No 171
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.6e-33 Score=281.75 Aligned_cols=205 Identities=22% Similarity=0.325 Sum_probs=163.4
Q ss_pred EEEeEEEEEccCcccc------cccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE
Q 006897 58 TVRNLSYAIQPNTSIL------SHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI 131 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~------~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i 131 (627)
+++|+++.|....... .....++-+.+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~---G~i 78 (236)
T cd03267 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS---GEV 78 (236)
T ss_pred ceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEE
Confidence 5678888876532110 0011122244679999999999999999999999999999999999999864 999
Q ss_pred EECCccCCC-hhhhcccEEEEc-cCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 132 TVNCHQIKK-PAQLRKICGFVA-QEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 132 ~i~g~~~~~-~~~~r~~ig~v~-Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
.++|+++.. ....++.++|++ |++.+++.+|++||+.+....+ +...++..++++++++.+||++..+ .++|
T Consensus 79 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~ 156 (236)
T cd03267 79 RVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY--DLPPARFKKRLDELSELLDLEELLDTPVRQLSL 156 (236)
T ss_pred EECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCH
Confidence 999987432 234567899998 5567888899999998865432 2334555667889999999976555 4569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.
T Consensus 157 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 157 GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYD 235 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEec
Confidence 99998 999999999999999999998766899999999998 58899999999999999876
Q ss_pred C
Q 006897 268 G 268 (627)
Q Consensus 268 G 268 (627)
|
T Consensus 236 g 236 (236)
T cd03267 236 G 236 (236)
T ss_pred C
Confidence 5
No 172
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-33 Score=286.44 Aligned_cols=202 Identities=18% Similarity=0.298 Sum_probs=164.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----Cccce
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD-----FDPRS 130 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~-----~~~G~ 130 (627)
+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+. ...|+
T Consensus 1 ml~~~nl~~~~~---------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~ 65 (272)
T PRK13547 1 MLTADHLHVARR---------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGD 65 (272)
T ss_pred CeEEEEEEEEEC---------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceE
Confidence 489999999993 2469999999999999999999999999999999999998851 01499
Q ss_pred EEECCccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHcCCccccC----C
Q 006897 131 ITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL--KGMSHKEKEDRVESLMDELGLTHVAG----S 202 (627)
Q Consensus 131 i~i~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~----~ 202 (627)
|.++|+++.. ....++.++|++|++.+++.+||+||+.++..... .+...++..++++++++.+||++..+ +
T Consensus 66 i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (272)
T PRK13547 66 VTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTT 145 (272)
T ss_pred EEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 9999988632 34556679999999876556899999988532111 01112344567889999999976544 4
Q ss_pred cCCccccC---------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhh
Q 006897 203 FVGDEENR---------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISK 255 (627)
Q Consensus 203 ~~gGe~qr---------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~ 255 (627)
++|||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||+
T Consensus 146 LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~ 224 (272)
T PRK13547 146 LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADR 224 (272)
T ss_pred CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 56888865 899999999999999999997655899999999998 48889999
Q ss_pred heeecCCeEEeeCCHHHH
Q 006897 256 FLILSRGSVVHYGSLELL 273 (627)
Q Consensus 256 i~vL~~G~iv~~G~~~~~ 273 (627)
+++|++|++++.|+++++
T Consensus 225 i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 225 IAMLADGAIVAHGAPADV 242 (272)
T ss_pred EEEEECCeEEEecCHHHH
Confidence 999999999999998776
No 173
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=281.76 Aligned_cols=201 Identities=24% Similarity=0.377 Sum_probs=167.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
.|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ ...|+|.+
T Consensus 7 ~l~~~nl~~~~~---------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~ 71 (261)
T PRK14258 7 AIKVNNLSFYYD---------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEF 71 (261)
T ss_pred eEEEeeEEEEeC---------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEE
Confidence 699999999993 2358999999999999999999999999999999999998741 12499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
+|+++.. ...+++.++|++|++.+++ +|+.||+.+..... +. +..+.++++.++++.+++.+ ..
T Consensus 72 ~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 148 (261)
T PRK14258 72 FNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIV--GWRPKLEIDDIVESALKDADLWDEIKHKIHKSA 148 (261)
T ss_pred CCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCc
Confidence 9987521 1345778999999988888 79999998865322 21 33344567889999998742 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC-
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR- 261 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~- 261 (627)
..++|||+|| ||+|||+.++..+.+.|++++++.|+|||++|||++ ++.++||++++|++
T Consensus 149 ~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 149 LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGN 227 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccC
Confidence 4567999998 999999999999999999987656899999999998 58899999999999
Q ss_pred ----CeEEeeCCHHHHHH
Q 006897 262 ----GSVVHYGSLELLEE 275 (627)
Q Consensus 262 ----G~iv~~G~~~~~~~ 275 (627)
|++++.|+++++.+
T Consensus 228 ~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 228 ENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred CCcCceEEEeCCHHHHHh
Confidence 99999999988743
No 174
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=280.04 Aligned_cols=199 Identities=24% Similarity=0.364 Sum_probs=164.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRD--QDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~--~~~~~G~i~i 133 (627)
.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++ ...+.|+|.+
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 67 (250)
T PRK14240 3 KISVKDLDLFYG---------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLL 67 (250)
T ss_pred eEEEEEEEEEEC---------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 589999999993 23599999999999999999999999999999999998763 1112499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++.. ....++.++|++|++.+++ +|++||+.+...... ..+.++.+++++++++.+++.+ ...
T Consensus 68 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 145 (250)
T PRK14240 68 DGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG-IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSAL 145 (250)
T ss_pred CCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCC
Confidence 9988632 2345778999999998887 899999998753321 1133455677888999988732 234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++||++++|++|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~ 222 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQ-QASRISDKTAFFLNGE 222 (250)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHH-HHHhhCCEEEEEECCE
Confidence 577999998 999999999999999999985 3 789999999998 4889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 223 i~~~~~~~~~~ 233 (250)
T PRK14240 223 IVEFGDTVDLF 233 (250)
T ss_pred EEEeCCHHHHH
Confidence 99999987763
No 175
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=282.58 Aligned_cols=200 Identities=20% Similarity=0.273 Sum_probs=165.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i~ 132 (627)
.+|+++||+++|+ .+++|+|+||++++||+++|+||||||||||+++|+|+++|. ..+.|+|.
T Consensus 19 ~~l~~~nl~~~~~---------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 19 IALSTKDLHVYYG---------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred eEEEEeeEEEEEC---------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 4799999999993 246999999999999999999999999999999999998742 11349999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~ 200 (627)
++|+++.. ....++.++|++|++.+++ .||+||+.++.... ....+++.++++.++++.++|.+ ..
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~ 161 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-GVKDKKVLDEIVETSLKQAALWDQVKDDLHKSA 161 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-CCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCc
Confidence 99988632 2345778999999998887 59999999875321 11234455677889999998842 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|+++. + +.|||++||+++ ++.++||++++|++|
T Consensus 162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l~~G 238 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQ-QAARASDYTAFFYLG 238 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH-HHHHhcCEEEEEECC
Confidence 4566999998 999999999999999999995 3 689999999998 588999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 239 ~i~~~g~~~~~~ 250 (267)
T PRK14237 239 DLIEYDKTRNIF 250 (267)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
No 176
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=8.7e-33 Score=277.19 Aligned_cols=197 Identities=37% Similarity=0.592 Sum_probs=161.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---CCCCccceEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR---DQDFDPRSIT 132 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~---~~~~~~G~i~ 132 (627)
.+.++|++++|... +..+.+|+|+||++++||+++|+||||||||||+|+|+|+++ |+ .|+|.
T Consensus 3 ~~~~~~~~~~~~~~-----------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~ 68 (226)
T cd03234 3 VLPWWDVGLKAKNW-----------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQIL 68 (226)
T ss_pred cceeecceeeeecC-----------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEE
Confidence 47899999999421 013579999999999999999999999999999999999998 54 49999
Q ss_pred ECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHH-HHHHcCCccccC----CcCCc
Q 006897 133 VNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVES-LMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 133 i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~-~l~~lgL~~~~~----~~~gG 206 (627)
++|+++. ....++.++|++|++.+++.+||+||+.++....... ...+...+++++ .++.+++.+..+ .++||
T Consensus 69 ~~g~~~~-~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 147 (226)
T cd03234 69 FNGQPRK-PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGG 147 (226)
T ss_pred ECCEECC-hHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHH
Confidence 9998853 3456788999999999999999999999875432211 122233345555 899999876544 56699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.+.|+++++ .|.|+|++||++..++.++||++++|++|++++.|
T Consensus 148 ~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 148 ERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9998 9999999999999999999876 48999999999843589999999999999998865
No 177
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3e-33 Score=277.96 Aligned_cols=187 Identities=28% Similarity=0.502 Sum_probs=153.1
Q ss_pred EEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|++
T Consensus 1 ~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~ 62 (213)
T cd03235 1 EVEDLTVSYG---------------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS---GSIRVFGKP 62 (213)
T ss_pred CcccceeEEC---------------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCcc
Confidence 3689999993 2459999999999999999999999999999999999998864 999999987
Q ss_pred CCChhhhcccEEEEccCCCCC--CCCCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCcccc----CCcCCcccc
Q 006897 138 IKKPAQLRKICGFVAQEDNLL--PLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDELGLTHVA----GSFVGDEEN 209 (627)
Q Consensus 138 ~~~~~~~r~~ig~v~Q~~~l~--~~lTV~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~q 209 (627)
+. ..++.++|++|++.+. ..+||+||+.++...... +...++.+++++++++.+|+++.. .+++|||+|
T Consensus 63 ~~---~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 139 (213)
T cd03235 63 LE---KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQ 139 (213)
T ss_pred HH---HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHH
Confidence 42 4567899999998763 337999999886421110 012234456789999999997644 456699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++| +++.|
T Consensus 140 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 8 9999999999999999999976 5899999999998 588899999999886 55544
No 178
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-32 Score=281.83 Aligned_cols=200 Identities=22% Similarity=0.318 Sum_probs=162.5
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~ 132 (627)
.+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+ |...+.|+|.
T Consensus 20 ~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 84 (268)
T PRK14248 20 HILEVKDLSIYYG---------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEIL 84 (268)
T ss_pred ceEEEEEEEEEeC---------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEE
Confidence 3799999999993 2459999999999999999999999999999999999864 2111349999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----c----cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----H----VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~----~~ 200 (627)
++|+++.. ....++.++|++|++.+++. |+.||+.+...... .......++++.++++.+++. + ..
T Consensus 85 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 162 (268)
T PRK14248 85 YEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG-ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA 162 (268)
T ss_pred ECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc
Confidence 99988632 12456789999999988885 99999998643221 112233456678889888874 2 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ ++|||++|||++ ++.++|||+++|++|
T Consensus 163 ~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~~~d~v~~l~~G 239 (268)
T PRK14248 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQ-QALRVSDRTAFFLNG 239 (268)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHH-HHHHhCCEEEEEECC
Confidence 4567999998 9999999999999999999953 589999999998 488899999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
++++.|+++++.
T Consensus 240 ~i~~~~~~~~~~ 251 (268)
T PRK14248 240 DLVEYDQTEQIF 251 (268)
T ss_pred EEEEeCCHHHHH
Confidence 999999987763
No 179
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=279.71 Aligned_cols=200 Identities=22% Similarity=0.340 Sum_probs=164.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i~i 133 (627)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|. ..+.|+|.+
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i 67 (250)
T PRK14262 3 IIEIENFSAYYG---------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYF 67 (250)
T ss_pred eEEEEeeEEEeC---------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEE
Confidence 689999999993 245899999999999999999999999999999999998741 113499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++.. ....++.++|++|++.+++ .|++||+.+...... ....++.+++++++++.+|+.+ ...
T Consensus 68 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 145 (250)
T PRK14262 68 KGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG-VKSKHKLDRIVEESLKKAALWDEVKSELNKPGT 145 (250)
T ss_pred CCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChh
Confidence 9987532 1245678999999998887 799999998753321 1123345567888999998853 223
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~-~~~~~~d~i~~l~~G~ 222 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIG-QAIRIADYIAFMYRGE 222 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 566999998 9999999999999999999863 689999999998 4889999999999999
Q ss_pred EEeeCCHHHHHH
Q 006897 264 VVHYGSLELLEE 275 (627)
Q Consensus 264 iv~~G~~~~~~~ 275 (627)
++..|+++++.+
T Consensus 223 i~~~g~~~~~~~ 234 (250)
T PRK14262 223 LIEYGPTREIVE 234 (250)
T ss_pred EEEecCHHHHHh
Confidence 999999887643
No 180
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=282.90 Aligned_cols=201 Identities=23% Similarity=0.373 Sum_probs=164.5
Q ss_pred CCcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--Cccc
Q 006897 52 KTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPR 129 (627)
Q Consensus 52 ~~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G 129 (627)
.+..+|+++||+++|. ++.+|+|+||+|++||+++|+||||||||||+++|+|++++.. .+.|
T Consensus 35 ~~~~~l~i~~l~~~~~---------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G 99 (285)
T PRK14254 35 SGETVIEARDLNVFYG---------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEG 99 (285)
T ss_pred CCCceEEEEEEEEEEC---------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCce
Confidence 4456899999999993 2459999999999999999999999999999999999987310 1349
Q ss_pred eEEECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------
Q 006897 130 SITVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------- 198 (627)
Q Consensus 130 ~i~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------- 198 (627)
+|.++|+++.. ...+++.++|++|++.+++. ||.||+.+....+ +.+. +.+++++++++.+||.+
T Consensus 100 ~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~-~~~~~~~~~l~~~~l~~~i~~~~~ 175 (285)
T PRK14254 100 ELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ--GYDG-DIDERVEESLRRAALWDEVKDQLD 175 (285)
T ss_pred EEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc--CCcH-HHHHHHHHHHHHcCCCchhHHHHh
Confidence 99999988532 23567789999999988885 9999999875432 2222 44567899999999842
Q ss_pred -ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe-e
Q 006897 199 -VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL-I 258 (627)
Q Consensus 199 -~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~-v 258 (627)
....++|||+|| ||+|||+.++..+.+.|+++++ +.|||++||+++ ++.++|||++ +
T Consensus 176 ~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~-~i~~~~dri~v~ 252 (285)
T PRK14254 176 SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQ-QAARISDKTAVF 252 (285)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHhhcCEEEEE
Confidence 234667999998 9999999999999999999975 379999999998 4888999975 6
Q ss_pred ecCCeEEeeCCHHHHH
Q 006897 259 LSRGSVVHYGSLELLE 274 (627)
Q Consensus 259 L~~G~iv~~G~~~~~~ 274 (627)
|++|++++.|+++++.
T Consensus 253 l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 253 LTGGELVEFDDTDKIF 268 (285)
T ss_pred eeCCEEEEeCCHHHHH
Confidence 7999999999987663
No 181
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=7e-33 Score=277.27 Aligned_cols=188 Identities=24% Similarity=0.402 Sum_probs=160.3
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|+
T Consensus 1 l~l~~v~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~ 62 (223)
T TIGR03740 1 LETKNLSKRFG---------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS---GEIIFDGH 62 (223)
T ss_pred CEEEeEEEEEC---------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 47899999993 2469999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr-- 210 (627)
++.. .. ++.++|++|++.+++.+|++||+.+....+ +.. ++++.++++.+||++..++ ++|||+||
T Consensus 63 ~~~~-~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~ 134 (223)
T TIGR03740 63 PWTR-KD-LHKIGSLIESPPLYENLTARENLKVHTTLL--GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLG 134 (223)
T ss_pred eccc-cc-cccEEEEcCCCCccccCCHHHHHHHHHHHc--CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHH
Confidence 7532 22 357999999999898899999998865432 111 3467889999999876544 56999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|++.+
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999975 4899999999998 4788999999999999999998753
No 182
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=279.46 Aligned_cols=200 Identities=19% Similarity=0.284 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|.. ..+|+|.+
T Consensus 4 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 68 (252)
T PRK14272 4 LLSAQDVNIYYG---------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILL 68 (252)
T ss_pred EEEEeeeEEEEC---------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEE
Confidence 689999999993 2469999999999999999999999999999999999987641 12499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--------cccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--------HVAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------~~~~ 201 (627)
+|+++.. ...+++.++|++|++.+++.+|+.||+.++..... ...+++..+++.++++.+++. ....
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 147 (252)
T PRK14272 69 DGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG-IRDRDHLMEVAERSLRGAALWDEVKDRLKTPAT 147 (252)
T ss_pred CCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcc
Confidence 9988632 23456789999999999998999999987653221 112334456677777777653 2234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++|||+++|++|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~ 224 (252)
T PRK14272 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMH-QAARVSDTTSFFLVGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 567999998 999999999999999999985 3 689999999998 4888999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 225 i~~~~~~~~~~ 235 (252)
T PRK14272 225 LVEHGPTDQLF 235 (252)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
No 183
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=283.11 Aligned_cols=200 Identities=22% Similarity=0.319 Sum_probs=163.2
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSI 131 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i 131 (627)
..+|+++||+++|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |...+.|+|
T Consensus 37 ~~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I 101 (286)
T PRK14275 37 KPHVVAKNFSIYYG---------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL 101 (286)
T ss_pred ceEEEEeeeEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEE
Confidence 45799999999993 2359999999999999999999999999999999999864 310124999
Q ss_pred EECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCc----c----
Q 006897 132 TVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLT----H---- 198 (627)
Q Consensus 132 ~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~----~---- 198 (627)
.++|+++.. ...+++.++|++|++.+++. ||.||+.++...+ +. +....++++.++++.+|+. +
T Consensus 102 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 178 (286)
T PRK14275 102 MFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLH--GINDKKQLEEIVEKSLRKAALWDEVSDRLDK 178 (286)
T ss_pred EECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhc--CCCcHHHHHHHHHHHHHHhCCccchhhHhhC
Confidence 999987532 12457789999999988875 9999999875332 22 2334456788889988873 2
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
....++|||+|| ||+|||+.++..+.+.|+++++ ++|||++|||++ ++.++|||+++|+
T Consensus 179 ~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 179 NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 234567999998 9999999999999999999863 589999999998 4888999999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|+++..|+++++.
T Consensus 256 ~G~i~~~g~~~~~~ 269 (286)
T PRK14275 256 EGVLVEHAPTAQLF 269 (286)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988764
No 184
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=280.21 Aligned_cols=199 Identities=20% Similarity=0.318 Sum_probs=162.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEEEC
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSITVN 134 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~i~ 134 (627)
-+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |...+.|+|.++
T Consensus 6 ~~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 70 (251)
T PRK14244 6 ASVKNLNLWYG---------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDID 70 (251)
T ss_pred EEeeeEEEEEC---------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEEC
Confidence 47899999993 2469999999999999999999999999999999999986 221134999999
Q ss_pred CccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccCC
Q 006897 135 CHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAGS 202 (627)
Q Consensus 135 g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~~ 202 (627)
|+++.. ...+++.++|++|++.+++. |+.||+.+....+......++.++++.++++.+||.+ ....
T Consensus 71 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 149 (251)
T PRK14244 71 GIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE 149 (251)
T ss_pred CEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhh
Confidence 987532 12457789999999988886 9999999864332111123345567889999999864 1245
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+.+.|+++. + |+|||++||+++ ++.++||++++|++|++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence 67999998 999999999999999999985 3 799999999998 58889999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 227 ~~~~~~~~~~ 236 (251)
T PRK14244 227 VEYNTTQEIF 236 (251)
T ss_pred EEeCCHHHHh
Confidence 9999987663
No 185
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-33 Score=310.10 Aligned_cols=200 Identities=16% Similarity=0.259 Sum_probs=168.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ .++|+|.++|
T Consensus 5 ~l~~~nl~~~~~---------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g 68 (506)
T PRK13549 5 LLEMKNITKTFG---------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEG 68 (506)
T ss_pred eEEEeeeEEEeC---------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECC
Confidence 799999999993 246999999999999999999999999999999999999862 1249999999
Q ss_pred ccCCCh--h-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKKP--A-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~~--~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++... . ..++.+|||+|++.+++.+||+||+.++...+..+ .+.++..++++++++.+||++..+ +++|||
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 148 (506)
T PRK13549 69 EELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQ 148 (506)
T ss_pred EECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHH
Confidence 886321 1 23567999999998999999999999875322111 233455677899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
||| ||+|||+.++..+.++|+++++ .|+|||++|||++ ++.++||++++|++|++++.|+
T Consensus 149 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 149 QQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecc
Confidence 999 9999999999999999999975 5899999999998 4888999999999999999998
Q ss_pred HHHH
Q 006897 270 LELL 273 (627)
Q Consensus 270 ~~~~ 273 (627)
++++
T Consensus 227 ~~~~ 230 (506)
T PRK13549 227 AAGM 230 (506)
T ss_pred cccC
Confidence 7765
No 186
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.7e-33 Score=309.59 Aligned_cols=198 Identities=18% Similarity=0.324 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 4 ~i~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~g 65 (501)
T PRK10762 4 LLQLKGIDKAFP---------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLG 65 (501)
T ss_pred eEEEeeeEEEeC---------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 699999999993 2469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 136 HQIKK--PA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRL--KGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 136 ~~~~~--~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
+++.. .. ..++.+||++|++.+++.+||+||+.++..... ...+.++.++++.++++.+||.+..+ +++||
T Consensus 66 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 145 (501)
T PRK10762 66 KEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIG 145 (501)
T ss_pred EECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHH
Confidence 88632 12 235679999999999999999999998643211 11233445677899999999987654 45699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.++..+.++|+++++ .|+|||++|||++ ++.++||++++|++|+++..|
T Consensus 146 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 146 EQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEec
Confidence 9999 9999999999999999999975 4899999999998 588999999999999999999
Q ss_pred CHHHH
Q 006897 269 SLELL 273 (627)
Q Consensus 269 ~~~~~ 273 (627)
+++++
T Consensus 224 ~~~~~ 228 (501)
T PRK10762 224 EVADL 228 (501)
T ss_pred CcCcC
Confidence 87654
No 187
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-32 Score=278.50 Aligned_cols=199 Identities=22% Similarity=0.284 Sum_probs=163.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i~i 133 (627)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++. ..+.|+|.+
T Consensus 6 ~i~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14261 6 ILSTKNLNLWYG---------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILY 70 (253)
T ss_pred eEEEeeeEEEEC---------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEE
Confidence 799999999993 245999999999999999999999999999999999997632 112499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++.. ....++.++|++|++.+++. ||+||+.+....+. .....+.++++.++++.+++.+ ...
T Consensus 71 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 148 (253)
T PRK14261 71 NGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG-EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL 148 (253)
T ss_pred CCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC-CCCHHHHHHHHHHHHHHhcCchhhHHHhhcChh
Confidence 9988642 23456789999999988885 99999998754321 1123344567888899888732 234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~-~~~~~~d~v~~l~~G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQ-QAARVSDYTGFMYLGK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHH-HHHhhCCEEEEEECCE
Confidence 567999998 9999999999999999999964 589999999998 4788999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
++..|+++++.
T Consensus 226 i~~~g~~~~~~ 236 (253)
T PRK14261 226 LIEFDKTTQIF 236 (253)
T ss_pred EEEcCCHHHHH
Confidence 99999987764
No 188
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.5e-32 Score=279.35 Aligned_cols=199 Identities=22% Similarity=0.324 Sum_probs=164.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+. |+|.++|
T Consensus 6 ~l~~~~l~~~~~---------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 67 (258)
T PRK11701 6 LLSVRGLTKLYG---------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA---GEVHYRM 67 (258)
T ss_pred eEEEeeeEEEcC---------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECC
Confidence 799999999993 2359999999999999999999999999999999999999864 9999999
Q ss_pred cc-----CCC--hhh----hcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc-
Q 006897 136 HQ-----IKK--PAQ----LRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA- 200 (627)
Q Consensus 136 ~~-----~~~--~~~----~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~- 200 (627)
++ +.. ... .++.++|++|++ .+++.+|+.||+.+..... ......+.++++.++++.+++.+ ..
T Consensus 68 ~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~ 146 (258)
T PRK11701 68 RDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-GARHYGDIRATAGDWLERVEIDAARID 146 (258)
T ss_pred ccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHcCCChhHHh
Confidence 87 532 112 245799999997 3677789999998753211 11123345667889999999963 33
Q ss_pred ---CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 201 ---GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 201 ---~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
..++|||+|| ||+|||+.++..+.+.|++++++.|.|||++||+++ .+.++||++++|
T Consensus 147 ~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l 225 (258)
T PRK11701 147 DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVM 225 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 4566999998 999999999999999999997766899999999998 477899999999
Q ss_pred cCCeEEeeCCHHHHH
Q 006897 260 SRGSVVHYGSLELLE 274 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~ 274 (627)
++|++++.|+++++.
T Consensus 226 ~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 226 KQGRVVESGLTDQVL 240 (258)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999987763
No 189
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-32 Score=278.22 Aligned_cols=198 Identities=22% Similarity=0.360 Sum_probs=162.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~i 133 (627)
+|+++|++++|+ .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ |.....|+|.+
T Consensus 4 ~l~~~~l~~~~~---------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i 68 (251)
T PRK14251 4 IISAKDVHLSYG---------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKF 68 (251)
T ss_pred eEEEEeeEEEEC---------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEE
Confidence 689999999993 2459999999999999999999999999999999999986 21113499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCc----c----cc
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLT----H----VA 200 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~----~----~~ 200 (627)
+|+++.. ....++.++|++|++.+++ .||+||+.++.... +. .++..+++++++++.+++. + ..
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 145 (251)
T PRK14251 69 EGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAIWKETKDNLDRNA 145 (251)
T ss_pred CCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCcchHHHhccCh
Confidence 9988532 1345778999999998886 69999998865322 21 2333456788899999983 2 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| |++|||+.++..+.+.|+++++ +.|||++||+++ ++.++||++++|++|
T Consensus 146 ~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~-~~~~~~d~i~~l~~G 222 (251)
T PRK14251 146 QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQ-QAGRISDQTAFLMNG 222 (251)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHH-HHHhhcCEEEEEECC
Confidence 4567999998 9999999999999999999853 689999999998 488999999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
+++..|+++++.
T Consensus 223 ~i~~~~~~~~~~ 234 (251)
T PRK14251 223 DLIEAGPTEEMF 234 (251)
T ss_pred EEEEeCCHHHHH
Confidence 999999987763
No 190
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=278.13 Aligned_cols=197 Identities=24% Similarity=0.349 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. .+.|+|.+
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 67 (249)
T PRK14253 3 KFNIENLDLFYG---------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTM 67 (249)
T ss_pred eEEEeccEEEEC---------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE
Confidence 689999999993 2459999999999999999999999999999999999988631 12499999
Q ss_pred CCccCC---ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIK---KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~---~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|.++. +....++.++|++|++.+++ .||.||+.++.... +. .++..++++.++++.+|+.+ ...
T Consensus 68 ~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 144 (249)
T PRK14253 68 DGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAF 144 (249)
T ss_pred CCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcc
Confidence 998753 12356778999999998887 79999999864322 11 23344567888888888742 223
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~~~d~i~~l~~G~ 221 (249)
T PRK14253 145 GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQ-QARRISDRTAFFLMGE 221 (249)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 567999998 9999999999999999999964 589999999998 5889999999999999
Q ss_pred EEeeCCHHHH
Q 006897 264 VVHYGSLELL 273 (627)
Q Consensus 264 iv~~G~~~~~ 273 (627)
+++.|+++++
T Consensus 222 i~~~g~~~~~ 231 (249)
T PRK14253 222 LVEHDDTQVI 231 (249)
T ss_pred EEEeCCHHHH
Confidence 9999998765
No 191
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=313.09 Aligned_cols=204 Identities=22% Similarity=0.342 Sum_probs=170.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.|... .+..++|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 11 ~~l~v~~l~~~y~~~-----------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~---G~i~~~ 76 (623)
T PRK10261 11 DVLAVENLNIAFMQE-----------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG---GLVQCD 76 (623)
T ss_pred ceEEEeceEEEecCC-----------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---eEEEEC
Confidence 379999999999421 123469999999999999999999999999999999999998864 999998
Q ss_pred CccCC------------Ch---hhhc-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC
Q 006897 135 CHQIK------------KP---AQLR-KICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196 (627)
Q Consensus 135 g~~~~------------~~---~~~r-~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 196 (627)
|.++. .. ..+| +.||||+|++ .+++.+||.||+.++...+. +.++++.++++.++|+.+||
T Consensus 77 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~gL 155 (623)
T PRK10261 77 KMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ-GASREEAMVEAKRMLDQVRI 155 (623)
T ss_pred CEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHCCC
Confidence 86321 11 1233 4799999997 67888999999999865321 33555667889999999999
Q ss_pred cc-------ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHH
Q 006897 197 TH-------VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ 251 (627)
Q Consensus 197 ~~-------~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~ 251 (627)
.+ ...+++|||+|| ||++||+.++.++.++|++++++.|+|||++|||++ ++.+
T Consensus 156 ~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~ 234 (623)
T PRK10261 156 PEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAE 234 (623)
T ss_pred CChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHH
Confidence 52 345677999999 999999999999999999998766899999999998 4889
Q ss_pred HhhhheeecCCeEEeeCCHHHHH
Q 006897 252 YISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 252 ~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
+||||++|++|++++.|+++++.
T Consensus 235 ~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 235 IADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred hCCEEEEeeCCeecccCCHHHhh
Confidence 99999999999999999987764
No 192
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-32 Score=273.19 Aligned_cols=185 Identities=26% Similarity=0.454 Sum_probs=155.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
+.+ ||+++|+ ++.+ |+||++++ |+++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 2 ~~~-~l~~~~~---------------~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 59 (214)
T cd03297 2 LCV-DIEKRLP---------------DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDG---GTIVLNGT 59 (214)
T ss_pred cee-eeeEecC---------------Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCE
Confidence 345 9999994 2334 99999999 9999999999999999999999998864 99999998
Q ss_pred cCCC------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCc
Q 006897 137 QIKK------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGD 206 (627)
Q Consensus 137 ~~~~------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gG 206 (627)
++.. ....++.++|++|++.+++.+|++||+.+..... ..+..++++.++++.+|+++..+ .++||
T Consensus 60 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 135 (214)
T cd03297 60 VLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK----RNREDRISVDELLDLLGLDHLLNRYPAQLSGG 135 (214)
T ss_pred ecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHH
Confidence 7532 1235678999999999998899999998864321 23344567899999999976443 46699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ||+|||+.+++.+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 136 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 136 EKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9998 999999999999999999998766899999999998 488899999999999998765
No 193
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-32 Score=277.35 Aligned_cols=199 Identities=22% Similarity=0.352 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
.|+++||+++|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|.. ...|+|.+
T Consensus 4 ~l~~~~l~~~~~---------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 68 (251)
T PRK14249 4 KIKIRGVNFFYH---------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLL 68 (251)
T ss_pred eEEEEEEEEEEC---------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEE
Confidence 689999999993 2459999999999999999999999999999999999998752 12499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--------cccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--------HVAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------~~~~ 201 (627)
+|+++.. ...+++.++|++|++.+++. |++||+.+....+.. ..+++.+++++++++.+++. ....
T Consensus 69 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 146 (251)
T PRK14249 69 DNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT-TAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL 146 (251)
T ss_pred CCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC-ChhhHHHHHHHHHHHHhCCchhhhhHhhCCcc
Confidence 9988632 23457889999999998875 999999987543211 12233456678888888864 2234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.++|+++. +++|||++||+++ ++.+.||++++|++|+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~~-~~~~~~d~i~~l~~G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNMQ-QAARASDWTGFLLTGD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHH-HHHhhCCEEEEEeCCe
Confidence 567999998 999999999999999999984 3789999999998 4889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 224 i~~~~~~~~~~ 234 (251)
T PRK14249 224 LVEYGRTGEIF 234 (251)
T ss_pred EEEeCCHHHHH
Confidence 99999987763
No 194
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-32 Score=276.57 Aligned_cols=200 Identities=22% Similarity=0.331 Sum_probs=162.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~ 132 (627)
.+|+++||+++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.+ |+..+.|+|.
T Consensus 4 ~~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 68 (252)
T PRK14255 4 KIITSSDVHLFYG---------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVS 68 (252)
T ss_pred ceEEEEeEEEEEC---------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEE
Confidence 3799999999993 2459999999999999999999999999999999999875 4211249999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----c----cc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----H----VA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~----~~ 200 (627)
++|+++.. ....++.++|++|++.+++ .|++||+.+....+.. ..++..++++.+.++.+++. + ..
T Consensus 69 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~ 146 (252)
T PRK14255 69 LRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV-KDKAVLDEAVETSLKQAAIWDEVKDHLHESA 146 (252)
T ss_pred EcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHcCCccchhhHHhcCc
Confidence 99987632 2345678999999998888 6999999986543211 12233345677788888763 2 23
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ +.|||++||+++ ++.++||++++|++|
T Consensus 147 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~G 223 (252)
T PRK14255 147 LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMH-QASRISDKTAFFLTG 223 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 4567999998 9999999999999999999964 479999999998 488899999999999
Q ss_pred eEEeeCCHHHHH
Q 006897 263 SVVHYGSLELLE 274 (627)
Q Consensus 263 ~iv~~G~~~~~~ 274 (627)
+++..|++.++.
T Consensus 224 ~i~~~~~~~~~~ 235 (252)
T PRK14255 224 NLIEFADTKQMF 235 (252)
T ss_pred EEEEeCCHHHHh
Confidence 999999887663
No 195
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-33 Score=260.18 Aligned_cols=198 Identities=27% Similarity=0.423 Sum_probs=176.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|+.++| +...+|++||++.++|+++.|||.|||||||+||||.=+.+|.. |.|.+||
T Consensus 6 ~l~v~dlHK~~---------------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~---G~I~v~g 67 (256)
T COG4598 6 ALEVEDLHKRY---------------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA---GSIRVNG 67 (256)
T ss_pred ceehhHHHhhc---------------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCC---ceEEECC
Confidence 58999999999 45679999999999999999999999999999999999988864 9999999
Q ss_pred ccCC------------C---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc
Q 006897 136 HQIK------------K---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA 200 (627)
Q Consensus 136 ~~~~------------~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 200 (627)
+.+. + ...+|.+.|+|||+.+++..|||.||+.-+. .+..+.++.+..++++.+|.++|+.+..
T Consensus 68 eei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaP-vhVLg~~k~ea~e~Ae~~L~kVGi~ek~ 146 (256)
T COG4598 68 EEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAP-VHVLGVSKAEAIERAEKYLAKVGIAEKA 146 (256)
T ss_pred eEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcc-hHhhcCCHHHHHHHHHHHHHHhCchhhh
Confidence 8762 0 1346778999999999999999999998753 3444668899999999999999998877
Q ss_pred CCcC----CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 201 GSFV----GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 201 ~~~~----gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
+.++ |||+|| |||+|||...-++++.+++++++ |+|++++||.+.. +.+...++++
T Consensus 147 ~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~F-AR~Vss~v~f 224 (256)
T COG4598 147 DAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGF-ARDVSSHVIF 224 (256)
T ss_pred hcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhH-HHhhhhheEE
Confidence 7654 999999 99999999999999999999975 9999999999996 7889999999
Q ss_pred ecCCeEEeeCCHHHHH
Q 006897 259 LSRGSVVHYGSLELLE 274 (627)
Q Consensus 259 L~~G~iv~~G~~~~~~ 274 (627)
|++|.|-++|+|+++.
T Consensus 225 Lh~G~iEE~G~P~qvf 240 (256)
T COG4598 225 LHQGKIEEEGPPEQVF 240 (256)
T ss_pred eecceecccCChHHHh
Confidence 9999999999998874
No 196
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-32 Score=279.14 Aligned_cols=200 Identities=20% Similarity=0.311 Sum_probs=166.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|.. .+.|+|.
T Consensus 20 ~~l~i~nl~~~~~---------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~ 84 (276)
T PRK14271 20 PAMAAVNLTLGFA---------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVL 84 (276)
T ss_pred cEEEEeeEEEEEC---------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEE
Confidence 3799999999993 3469999999999999999999999999999999999998620 1349999
Q ss_pred ECCccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------cC
Q 006897 133 VNCHQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV--------AG 201 (627)
Q Consensus 133 i~g~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~--------~~ 201 (627)
++|+++.. ...+++.++|++|++.+++ .|++||+.++.... ...+.++.++++.++++.+|+.+. ..
T Consensus 85 ~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~ 162 (276)
T PRK14271 85 LGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH-KLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPF 162 (276)
T ss_pred ECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcc
Confidence 99988632 2346778999999998888 79999998864322 112344555677888999998632 34
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.++|||+++|++|+
T Consensus 163 ~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~dri~~l~~G~ 239 (276)
T PRK14271 163 RLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLA-QAARISDRAALFFDGR 239 (276)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 567999998 9999999999999999999964 489999999998 5889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 240 i~~~g~~~~~~ 250 (276)
T PRK14271 240 LVEEGPTEQLF 250 (276)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
No 197
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-32 Score=311.67 Aligned_cols=212 Identities=26% Similarity=0.352 Sum_probs=172.4
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||++.|+.+... + ......+.+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~---~-~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~---G~I~~ 383 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGL---L-NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG---GEIIF 383 (623)
T ss_pred CceEEEeeeEEEEcCCCcc---c-cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---cEEEE
Confidence 3579999999999521000 0 000012469999999999999999999999999999999999999864 99999
Q ss_pred CCccCCC--h---hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----C
Q 006897 134 NCHQIKK--P---AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----G 201 (627)
Q Consensus 134 ~g~~~~~--~---~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~ 201 (627)
+|+++.. . ..+++.|+||||++ .+++.+||.||+.+....+. ...+++.++++.++|+.+||+ +.. +
T Consensus 384 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 462 (623)
T PRK10261 384 NGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG-LLPGKAAAARVAWLLERVGLLPEHAWRYPH 462 (623)
T ss_pred CCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 9987632 1 23567899999996 58889999999998654321 113445567899999999995 333 4
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
+++|||||| ||+|||+.++.+++++|++++++.|.|||++|||++ .+.++||||++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 567999999 999999999999999999998767899999999998 4889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999998874
No 198
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.1e-32 Score=277.99 Aligned_cols=198 Identities=19% Similarity=0.290 Sum_probs=162.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CccceEEEC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD-FDPRSITVN 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~-~~~G~i~i~ 134 (627)
+|+++||+++|+ +.+|+|+||++++||+++|+||||||||||+++|+|+++|.. .+.|+|.++
T Consensus 4 ~l~~~~l~~~~~----------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~ 67 (254)
T PRK10418 4 QIELRNIALQAA----------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLD 67 (254)
T ss_pred EEEEeCeEEEec----------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEEC
Confidence 689999999992 248999999999999999999999999999999999998721 023999999
Q ss_pred CccCCChhhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc---c----cCCcCC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH---V----AGSFVG 205 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~----~~~~~g 205 (627)
|+++......++.++||+|++. +.+.+|+.+++.+.+... +... .++++.++++.+||.+ . ...++|
T Consensus 68 g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~ 143 (254)
T PRK10418 68 GKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL--GKPA--DDATLTAALEAVGLENAARVLKLYPFEMSG 143 (254)
T ss_pred CeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc--CCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCH
Confidence 9886422223467999999974 446679999987754321 1122 2367899999999875 2 245679
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.
T Consensus 144 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 144 GMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99998 999999999999999999997766899999999998 47889999999999999999
Q ss_pred CCHHHHH
Q 006897 268 GSLELLE 274 (627)
Q Consensus 268 G~~~~~~ 274 (627)
|+++++.
T Consensus 223 ~~~~~~~ 229 (254)
T PRK10418 223 GDVETLF 229 (254)
T ss_pred cCHHHHh
Confidence 9988764
No 199
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=308.16 Aligned_cols=198 Identities=22% Similarity=0.338 Sum_probs=167.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 5 ~l~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g 66 (510)
T PRK09700 5 YISMAGIGKSFG---------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK---GTITINN 66 (510)
T ss_pred eEEEeeeEEEcC---------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCc---cEEEECC
Confidence 799999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhc--CCC---CCHHHHHHHHHHHHHHcCCccccC----Cc
Q 006897 136 HQIKK--PA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFR--LKG---MSHKEKEDRVESLMDELGLTHVAG----SF 203 (627)
Q Consensus 136 ~~~~~--~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~--~~~---~~~~~~~~~v~~~l~~lgL~~~~~----~~ 203 (627)
+++.. .. ..++.+|||+|++.+++.+||+||+.++.... ..+ .+.++.++++.++++.+||.+..+ .+
T Consensus 67 ~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 146 (510)
T PRK09700 67 INYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANL 146 (510)
T ss_pred EECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhC
Confidence 88633 12 23467999999999999999999998753210 011 123445678999999999976554 45
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..++++|+++++ .|+|||++|||++ ++.++||++++|++|+++
T Consensus 147 SgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 147 SISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLA-EIRRICDRYTVMKDGSSV 224 (510)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEe
Confidence 6999999 9999999999999999999976 4899999999998 488999999999999999
Q ss_pred eeCCHHHH
Q 006897 266 HYGSLELL 273 (627)
Q Consensus 266 ~~G~~~~~ 273 (627)
+.|+++++
T Consensus 225 ~~g~~~~~ 232 (510)
T PRK09700 225 CSGMVSDV 232 (510)
T ss_pred eecchhhC
Confidence 99988765
No 200
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.9e-32 Score=335.77 Aligned_cols=204 Identities=20% Similarity=0.346 Sum_probs=178.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+|+|+. +++.+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 1936 ~~L~v~nLsK~Y~~-------------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts---G~I~i~ 1999 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-------------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS---GDATVA 1999 (2272)
T ss_pred ceEEEEEEEEEECC-------------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEEC
Confidence 47999999999942 12469999999999999999999999999999999999999864 999999
Q ss_pred CccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcccc
Q 006897 135 CHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEEN 209 (627)
Q Consensus 135 g~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~q 209 (627)
|+++.+ ..+.++.+||+||++.+++.+||+|++.+.+.++ +.++++.+++++++++.+||.+.+++ ++|||||
T Consensus 2000 G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~--g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKq 2077 (2272)
T TIGR01257 2000 GKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR--GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKR 2077 (2272)
T ss_pred CEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHH
Confidence 998642 3456778999999999999999999999876543 34555667788999999999876654 5599999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.+++.+++.|++++++ |+|||++||+++ ++.++|||+++|++|+++..|+++
T Consensus 2078 RLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q 2155 (2272)
T TIGR01257 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQ 2155 (2272)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9 99999999999999999999764 899999999998 699999999999999999999999
Q ss_pred HHHHHHH
Q 006897 272 LLEETIN 278 (627)
Q Consensus 272 ~~~~~~~ 278 (627)
++...+.
T Consensus 2156 ~Lk~~~g 2162 (2272)
T TIGR01257 2156 HLKSKFG 2162 (2272)
T ss_pred HHHHHhC
Confidence 9987775
No 201
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-32 Score=279.37 Aligned_cols=199 Identities=22% Similarity=0.337 Sum_probs=161.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~ 132 (627)
.+|+++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |...+.|+|.
T Consensus 23 ~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~ 87 (271)
T PRK14238 23 VVFDTQNLNLWYG---------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKIL 87 (271)
T ss_pred eEEEEeeeEEEEC---------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEE
Confidence 3799999999993 2358999999999999999999999999999999999987 2111349999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC----c----ccc
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL----T----HVA 200 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~----~~~ 200 (627)
++|+++.. ...+++.+||++|++.+++. |+.||+.++...+. ..+++..++.+.++++.+++ . ...
T Consensus 88 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 165 (271)
T PRK14238 88 YRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG-IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA 165 (271)
T ss_pred ECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCc
Confidence 99988631 23457789999999988874 99999998753221 11222334566777777653 2 233
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|
T Consensus 166 ~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~i~~~~d~i~~l~~G 242 (271)
T PRK14238 166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQ-QAARISDKTAFFLNG 242 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHH-HHHHhCCEEEEEECC
Confidence 4567999998 9999999999999999999964 689999999998 488899999999999
Q ss_pred eEEeeCCHHHH
Q 006897 263 SVVHYGSLELL 273 (627)
Q Consensus 263 ~iv~~G~~~~~ 273 (627)
++++.|+++++
T Consensus 243 ~i~~~g~~~~~ 253 (271)
T PRK14238 243 YVNEYDDTDKI 253 (271)
T ss_pred EEEEeCCHHHH
Confidence 99999998766
No 202
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.3e-31 Score=304.04 Aligned_cols=194 Identities=25% Similarity=0.413 Sum_probs=161.5
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...++++||+|+|+.+ .+.+||+|+||+|++|+.+||+|||||||||++++|.+++.|+. |+|.+
T Consensus 348 ~g~ief~nV~FsYPsR------------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~---G~V~i 412 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSR------------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS---GEVLI 412 (1228)
T ss_pred ccceEEEEEEecCCCC------------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---ceEEE
Confidence 3469999999999643 24579999999999999999999999999999999999999975 99999
Q ss_pred CCccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc------------
Q 006897 134 NCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV------------ 199 (627)
Q Consensus 134 ~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~------------ 199 (627)
||.++.+ .+.+|.+||.|.|+|.+|. .||+||+.|+. + +..++++.++.+..+..+.
T Consensus 413 dG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~----~----dat~~~i~~a~k~ana~~fi~~lp~g~~T~v 483 (1228)
T KOG0055|consen 413 DGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGK----P----DATREEIEEAAKAANAHDFILKLPDGYDTLV 483 (1228)
T ss_pred cCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCC----C----cccHHHHHHHHHHccHHHHHHhhHHhhcccc
Confidence 9999743 5778999999999999886 59999999873 1 1223344445444433221
Q ss_pred ---cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 200 ---AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 200 ---~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
.-+++|||||| |||+||+.+++.+.+.|.+.. .|+|.|+++|+++. + +.+|+|++
T Consensus 484 ge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLSt-I-rnaD~I~v 559 (1228)
T KOG0055|consen 484 GERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLST-I-RNADKIAV 559 (1228)
T ss_pred cCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhh-h-hccCEEEE
Confidence 22456999999 899999999999999999875 48999999999983 5 55999999
Q ss_pred ecCCeEEeeCCHHHHHH
Q 006897 259 LSRGSVVHYGSLELLEE 275 (627)
Q Consensus 259 L~~G~iv~~G~~~~~~~ 275 (627)
|++|+|++.|+++|+.+
T Consensus 560 ~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 560 MEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EECCEEEEecCHHHHHh
Confidence 99999999999999864
No 203
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-32 Score=277.25 Aligned_cols=199 Identities=20% Similarity=0.339 Sum_probs=164.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF--DPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~--~~G~i~i 133 (627)
.|+++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+|+|+|+++|+.. +.|+|.+
T Consensus 7 ~l~~~~l~~~~~---------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~ 71 (259)
T PRK14260 7 AIKVKDLSFYYN---------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDF 71 (259)
T ss_pred eEEEEEEEEEEC---------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEE
Confidence 699999999993 24599999999999999999999999999999999999886311 2499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----ccc----C
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----HVA----G 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~----~ 201 (627)
+|+++.. ...+++.++|++|++.+++ +|++||+.++...+. ..++.+.++++.++++.+|+. +.. .
T Consensus 72 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 149 (259)
T PRK14260 72 FGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA-KLPQADLDEIVESALKGAALWQEVKDKLNKSAL 149 (259)
T ss_pred CCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcc
Confidence 9987632 1345678999999998887 799999988754321 123344556788899999873 222 3
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec---
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS--- 260 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--- 260 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|+
T Consensus 150 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~i~~~~d~i~~l~~~~ 226 (259)
T PRK14260 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQ-QATRVSDFTAFFSTDE 226 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhcCeEEEEeccC
Confidence 566999998 9999999999999999999863 589999999998 5889999999997
Q ss_pred --CCeEEeeCCHHHHH
Q 006897 261 --RGSVVHYGSLELLE 274 (627)
Q Consensus 261 --~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 227 ~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 227 SRIGQMVEFGVTTQIF 242 (259)
T ss_pred CCCceEEEeCCHHHHh
Confidence 59999999998764
No 204
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.3e-32 Score=305.71 Aligned_cols=193 Identities=21% Similarity=0.345 Sum_probs=166.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++
T Consensus 10 ~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~ 71 (510)
T PRK15439 10 PLLCARSISKQYS---------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIG 71 (510)
T ss_pred ceEEEEeEEEEeC---------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEC
Confidence 3799999999993 2459999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--hhhh-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 135 CHQIKK--PAQL-RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 135 g~~~~~--~~~~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
|+++.. .... ++.+||++|++.+++.+||+||+.++.. ..++.+++++++++.+||++..+ .++|||
T Consensus 72 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 145 (510)
T PRK15439 72 GNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP------KRQASMQKMKQLLAALGCQLDLDSSAGSLEVAD 145 (510)
T ss_pred CEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc------cchHHHHHHHHHHHHcCCCccccCChhhCCHHH
Confidence 988632 2222 3569999999999999999999988531 12344577899999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|+
T Consensus 146 ~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~ 223 (510)
T PRK15439 146 RQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGK 223 (510)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 999 9999999999999999999976 4899999999998 4889999999999999999999
Q ss_pred HHHH
Q 006897 270 LELL 273 (627)
Q Consensus 270 ~~~~ 273 (627)
++++
T Consensus 224 ~~~~ 227 (510)
T PRK15439 224 TADL 227 (510)
T ss_pred hHHc
Confidence 8765
No 205
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.3e-32 Score=273.01 Aligned_cols=191 Identities=26% Similarity=0.485 Sum_probs=160.2
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|+++.|..+ .+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 2 l~~~~l~~~~~~~-----------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~ 67 (220)
T TIGR02982 2 ISIRNLNHYYGHG-----------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQ 67 (220)
T ss_pred EEEEEEEEEccCC-----------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCE
Confidence 7899999999421 112569999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 137 QIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 137 ~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
++.. . ...++.++|++|++.+++.+|+.||+.++.... .....++.+++++++++.+||.+..+ .++|||
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~ 146 (220)
T TIGR02982 68 ELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQ-PNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQ 146 (220)
T ss_pred EhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHH
Confidence 8632 1 235678999999999998899999999875432 11234556678999999999976544 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
+|| |++|||+.++..+.+.|++++++.|+|||++||+++ +.++||++++|++|++
T Consensus 147 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 147 KQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 998 999999999999999999997656899999999996 4689999999999986
No 206
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-32 Score=278.35 Aligned_cols=199 Identities=26% Similarity=0.373 Sum_probs=164.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
.+|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|++++.. .+.|+|.
T Consensus 24 ~~l~~~nl~~~~~---------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~ 88 (272)
T PRK14236 24 TALEVRNLNLFYG---------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIR 88 (272)
T ss_pred cEEEEEEEEEEEC---------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEE
Confidence 3799999999993 2359999999999999999999999999999999999987411 1349999
Q ss_pred ECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCcc--------c
Q 006897 133 VNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTH--------V 199 (627)
Q Consensus 133 i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~--------~ 199 (627)
++|+++.. ...+++.++|++|++.+++. |++||+.+..... +. .+++.+++++++++.+++.+ .
T Consensus 89 i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 165 (272)
T PRK14236 89 LDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRLHEN 165 (272)
T ss_pred ECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHhhCC
Confidence 99988632 23457889999999988886 9999998865332 21 23344567888999998852 2
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
...++|||+|| ||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.|||+++|++
T Consensus 166 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~-~~~~~~d~i~~l~~ 242 (272)
T PRK14236 166 AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQ-QAARVSDYTAFMYM 242 (272)
T ss_pred cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHH-HHHhhCCEEEEEEC
Confidence 34567999998 9999999999999999999964 689999999998 48889999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 243 G~i~~~g~~~~~~ 255 (272)
T PRK14236 243 GKLVEYGDTDTLF 255 (272)
T ss_pred CEEEecCCHHHHh
Confidence 9999999987663
No 207
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-32 Score=276.53 Aligned_cols=214 Identities=22% Similarity=0.329 Sum_probs=187.2
Q ss_pred CcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE
Q 006897 53 TTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132 (627)
Q Consensus 53 ~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~ 132 (627)
.+..++.+||...|+-+.++. +.......++++||+++++||.+||+|+||||||||-++|.+++++. |+|.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~----~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~----G~I~ 344 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFL----RRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIR 344 (534)
T ss_pred CCceEEecceEEEEecCCccc----cccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC----ceEE
Confidence 356899999999997664322 22233467999999999999999999999999999999999999863 9999
Q ss_pred ECCccCCC--h---hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----cc
Q 006897 133 VNCHQIKK--P---AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VA 200 (627)
Q Consensus 133 i~g~~~~~--~---~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~ 200 (627)
++|+++.. . .-+|+++-.||||| .+-|.|||.+-+.-++..+.+..+++++++++.++|+++||+. ..
T Consensus 345 F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP 424 (534)
T COG4172 345 FDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP 424 (534)
T ss_pred ECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC
Confidence 99999742 2 34678999999997 5899999999999998887777789999999999999999974 34
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
+..+|||||| |||+||-.-+.+++++|+++.+++|.+-+++|||+.. +..+||+++||++|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEeCC
Confidence 5566999999 9999999999999999999999999999999999995 88899999999999
Q ss_pred eEEeeCCHHHHHH
Q 006897 263 SVVHYGSLELLEE 275 (627)
Q Consensus 263 ~iv~~G~~~~~~~ 275 (627)
+||++|+.+++.+
T Consensus 504 kiVE~G~~~~if~ 516 (534)
T COG4172 504 KIVEQGPTEAVFA 516 (534)
T ss_pred EEeeeCCHHHHhc
Confidence 9999999988753
No 208
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=5.1e-32 Score=278.44 Aligned_cols=208 Identities=20% Similarity=0.294 Sum_probs=167.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|....- ...+.++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 3 ~l~~~nl~~~~~~~~~------~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s---G~i~~~g 73 (268)
T PRK10419 3 LLNVSGLSHHYAHGGL------SGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ---GNVSWRG 73 (268)
T ss_pred eEEEeceEEEecCCcc------ccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 6899999999942100 000013569999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--h---hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCc
Q 006897 136 HQIKK--P---AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSF 203 (627)
Q Consensus 136 ~~~~~--~---~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~ 203 (627)
+++.. . ...++.++|++|++ .+++..|+.||+.+.... .......+..++++++++.+|+. +.. ..+
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 152 (268)
T PRK10419 74 EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH-LLSLDKAERLARASEMLRAVDLDDSVLDKRPPQL 152 (268)
T ss_pred EeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh-hccCCHHHHHHHHHHHHHHcCCChhHhhCCCccC
Confidence 87532 1 23567899999997 466778999999875421 11223445566899999999996 333 346
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.++||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEe
Confidence 6999998 999999999999999999998766899999999998 488899999999999999
Q ss_pred eeCCHHHHH
Q 006897 266 HYGSLELLE 274 (627)
Q Consensus 266 ~~G~~~~~~ 274 (627)
+.|+++++.
T Consensus 232 ~~g~~~~~~ 240 (268)
T PRK10419 232 ETQPVGDKL 240 (268)
T ss_pred eeCChhhcc
Confidence 999987653
No 209
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-32 Score=267.72 Aligned_cols=180 Identities=28% Similarity=0.422 Sum_probs=147.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.+.++||+|.|+.+ ++++.+|+|+||++++||+++|+||||||||||+++|+|+++|...+.|+|.++|
T Consensus 3 ~~~~~~~~~~~~~~-----------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g 71 (202)
T cd03233 3 TLSWRNISFTTGKG-----------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71 (202)
T ss_pred eEEEEccEEEeccC-----------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECC
Confidence 68999999999632 1346799999999999999999999999999999999999983212349999999
Q ss_pred ccCCCh-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC----
Q 006897 136 HQIKKP-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR---- 210 (627)
Q Consensus 136 ~~~~~~-~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr---- 210 (627)
+++... ...++.++|++|++.+++.+||+||+.++.... ++.....++|||+||
T Consensus 72 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------~~~~~~~LS~Ge~qrl~la 130 (202)
T cd03233 72 IPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------GNEFVRGISGGERKRVSIA 130 (202)
T ss_pred EECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---------------------cccchhhCCHHHHHHHHHH
Confidence 886432 346778999999999999999999998764210 334456678999988
Q ss_pred --------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccC-ccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 --------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQ-PSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 --------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~-~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.+++.+.+.|++++++.+.|+|+++|+ ++ ++.+.||++++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~-~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASD-EIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHH-HHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999977556777766554 45 588999999999999998764
No 210
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-32 Score=291.96 Aligned_cols=189 Identities=26% Similarity=0.462 Sum_probs=163.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|.+ +++||+++||+|++||.+||+|+|||||||++|+|.++.. . +|+|.+||
T Consensus 351 ~I~F~dV~f~y~~--------------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG 412 (591)
T KOG0057|consen 351 SIEFDDVHFSYGP--------------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDG 412 (591)
T ss_pred cEEEEeeEEEeCC--------------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECC
Confidence 5999999999953 2459999999999999999999999999999999999987 3 39999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++. +.+.+|+.|||||||..||.+ ||.+||.|+.. ....++|-++.+..|+++..
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~--------sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP--------SASDEEVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC--------CcCHHHHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 9984 357899999999999999976 99999999741 12245577777777876532
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||.||.++..++++.+.+.. .|+|+|++.|+++ ..+-||+|++|+
T Consensus 484 rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~--ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLD--LLKDFDKIIVLD 559 (591)
T ss_pred cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecch--hHhcCCEEEEEE
Confidence 3445999999 899999999999999999953 5899999999997 578899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++.+.|+.+++..
T Consensus 560 nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 560 NGTVKEYGTHSELLA 574 (591)
T ss_pred CCeeEEeccHHHHhh
Confidence 999999999999876
No 211
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.8e-32 Score=273.32 Aligned_cols=191 Identities=23% Similarity=0.359 Sum_probs=156.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.|. ++++++|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++
T Consensus 6 ~~i~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~ 67 (225)
T PRK10247 6 PLLQLQNVGYLAG---------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS---GTLLFE 67 (225)
T ss_pred ceEEEeccEEeeC---------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEEC
Confidence 3799999999993 2459999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCcCCcc
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSFVGDE 207 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~~gGe 207 (627)
|+++.. ....++.++|++|++.+++. |++||+.+....+. . ...+++++++++.+|+. ... ..++|||
T Consensus 68 g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~--~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 142 (225)
T PRK10247 68 GEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN--Q--QPDPAIFLDDLERFALPDTILTKNIAELSGGE 142 (225)
T ss_pred CEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC--C--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHH
Confidence 987532 33456789999999988875 99999988643321 1 12245678999999995 343 3456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec-CCeEEeeC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS-RGSVVHYG 268 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~-~G~iv~~G 268 (627)
+|| ||+|||+.++..+.+.|++++++.|.|||++||+++. + +.||++++|+ ++..+.+|
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 143 KQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEA 220 (225)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhh
Confidence 998 9999999999999999999987668999999999984 5 5799999994 56666666
Q ss_pred CH
Q 006897 269 SL 270 (627)
Q Consensus 269 ~~ 270 (627)
+.
T Consensus 221 ~~ 222 (225)
T PRK10247 221 RY 222 (225)
T ss_pred hh
Confidence 54
No 212
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.9e-32 Score=317.12 Aligned_cols=188 Identities=26% Similarity=0.391 Sum_probs=160.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ .++.+|+|+||+|++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 451 ~I~~~nvsf~Y~~-------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg 514 (686)
T TIGR03797 451 AIEVDRVTFRYRP-------------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES---GSVFYDG 514 (686)
T ss_pred eEEEEEEEEEcCC-------------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECC
Confidence 5999999999942 12469999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++. +...+|+++|||+|++.+|+. |++|||.++. + ..++++.++++..|+++..
T Consensus 515 ~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~-----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige 584 (686)
T TIGR03797 515 QDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA----P-----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISE 584 (686)
T ss_pred EEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCC----C-----CCHHHHHHHHHHcCcHHHHHhccccccccccC
Confidence 9974 356789999999999999986 9999998752 1 1235577778877776432
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+++++.+.|+++ ++|+|++||+++ ..+.||+|++|+
T Consensus 585 ~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~--~i~~~D~Iivl~ 658 (686)
T TIGR03797 585 GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLS--TIRNADRIYVLD 658 (686)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChH--HHHcCCEEEEEE
Confidence 2356999999 99999999999999999875 479999999997 457799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 659 ~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 659 AGRVVQQGTYDELMA 673 (686)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 213
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.1e-32 Score=314.14 Aligned_cols=189 Identities=21% Similarity=0.368 Sum_probs=157.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++||++.|.+ ++++|+|+||++++||.+||+||||||||||+++|+|++ |++ |+|.+||
T Consensus 349 ~i~~~~vsf~~~~--------------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~---G~I~i~g 410 (588)
T PRK11174 349 TIEAEDLEILSPD--------------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ---GSLKING 410 (588)
T ss_pred eEEEEeeEEeccC--------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC---cEEEECC
Confidence 5999999987631 246999999999999999999999999999999999999 753 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++.+ .+.+|++|+||+|++.+|+. |++|||.++. +..+ +++++++++..++++.
T Consensus 411 ~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge 481 (588)
T PRK11174 411 IELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGD 481 (588)
T ss_pred EecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----CCCC----HHHHHHHHHHhCHHHHHHhccccccccccc
Confidence 98743 56789999999999999986 9999999862 1122 3445555555554321
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||||| |||+||+.+++.+.+.|+++. .++|+|++||+++ ..+.||+|++|+
T Consensus 482 ~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~--~i~~aD~Iivl~ 557 (588)
T PRK11174 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLE--DLAQWDQIWVMQ 557 (588)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChH--HHHhCCEEEEEe
Confidence 23466999999 999999999999999999985 4799999999997 457799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+.+++.+
T Consensus 558 ~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 558 DGQIVQQGDYAELSQ 572 (588)
T ss_pred CCeEeecCCHHHHHh
Confidence 999999999988754
No 214
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=312.69 Aligned_cols=192 Identities=20% Similarity=0.354 Sum_probs=161.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++||+++|++ +++.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 341 ~i~~~~vsf~y~~-------------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g 404 (582)
T PRK11176 341 DIEFRNVTFTYPG-------------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE---GEILLDG 404 (582)
T ss_pred eEEEEEEEEecCC-------------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCC---ceEEECC
Confidence 5999999999942 23469999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++.+ ...+++.++||||++.+|+. |++|||.++. + .+..+++++++++.+|+++.
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~---~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~ 476 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR----T---EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGE 476 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC----C---CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCC
Confidence 98643 46788999999999999986 9999998752 1 11124556667777665432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||||| |||+||+.++..+++.|+++. .++|+|++||+++ ..+.||+|++|+
T Consensus 477 ~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~--~~~~~D~Ii~l~ 552 (582)
T PRK11176 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLS--TIEKADEILVVE 552 (582)
T ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchH--HHHhCCEEEEEE
Confidence 13356999999 999999999999999999985 3689999999996 467899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 553 ~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 553 DGEIVERGTHAELLA 567 (582)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999988753
No 215
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-32 Score=274.60 Aligned_cols=201 Identities=22% Similarity=0.362 Sum_probs=164.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc---cceE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFD---PRSI 131 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~---~G~i 131 (627)
++|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+.+. .|++
T Consensus 9 ~~i~~~~~~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~ 73 (257)
T PRK14246 9 DVFNISRLYLYIN---------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKV 73 (257)
T ss_pred hheeeeeEEEecC---------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEE
Confidence 4799999999993 346999999999999999999999999999999999999886411 1455
Q ss_pred EECCccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc----cc----C
Q 006897 132 TVNCHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH----VA----G 201 (627)
Q Consensus 132 ~i~g~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~----~ 201 (627)
.++|+++. .....++.++|++|++.+++.+|++||+.++.... ....+++..+++.++++.+++.+ .. .
T Consensus 74 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 152 (257)
T PRK14246 74 LYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH-GIKEKREIKKIVEECLRKVGLWKEVYDRLNSPAS 152 (257)
T ss_pred EECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcc
Confidence 55555542 22356778999999999999899999999875322 11134455677899999999852 22 3
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ +.|||++||+++ .+.++||++++|++|+
T Consensus 153 ~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~-~~~~~~d~v~~l~~g~ 229 (257)
T PRK14246 153 QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQ-QVARVADYVAFLYNGE 229 (257)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHH-HHHHhCCEEEEEECCE
Confidence 456999998 9999999999999999999853 589999999998 4789999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 230 i~~~g~~~~~~ 240 (257)
T PRK14246 230 LVEWGSSNEIF 240 (257)
T ss_pred EEEECCHHHHH
Confidence 99999988764
No 216
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.1e-31 Score=273.76 Aligned_cols=199 Identities=22% Similarity=0.300 Sum_probs=162.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. |+|.++|
T Consensus 3 ~l~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 64 (253)
T TIGR02323 3 LLQVSGLSKSYG---------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH---GTATYIM 64 (253)
T ss_pred eEEEeeeEEEeC---------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEEec
Confidence 699999999993 2358999999999999999999999999999999999998864 9999998
Q ss_pred cc-----CCC--hh----hhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc-
Q 006897 136 HQ-----IKK--PA----QLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA- 200 (627)
Q Consensus 136 ~~-----~~~--~~----~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~- 200 (627)
++ +.. .. ..++.++|++|++. +++.+|+.||+.+..... ......+.+++++++++.+|+. +..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~ 143 (253)
T TIGR02323 65 RSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GARHYGNIRAAAHDWLEEVEIDPTRID 143 (253)
T ss_pred ccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cccchHHHHHHHHHHHHHcCCChhhhh
Confidence 76 422 11 12457999999974 456679999997643211 1111224457789999999996 343
Q ss_pred ---CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 201 ---GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 201 ---~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
..++|||+|| ||+|||+.++..+.+.|++++++.|.|||++||+++ ++.++||++++|
T Consensus 144 ~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l 222 (253)
T TIGR02323 144 DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVM 222 (253)
T ss_pred cCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 3456999998 999999999999999999987656899999999998 478899999999
Q ss_pred cCCeEEeeCCHHHHH
Q 006897 260 SRGSVVHYGSLELLE 274 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~ 274 (627)
++|++++.|+++++.
T Consensus 223 ~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 223 QQGRVVESGLTDQVL 237 (253)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999987664
No 217
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.98 E-value=8.5e-32 Score=302.65 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i~i 133 (627)
+|+++||+++|+.+ +..+.+|+|+||++++||++||+||||||||||+|+|+|+++|. ..++|+|.+
T Consensus 5 ~l~~~~l~~~~~~~-----------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 73 (529)
T PRK15134 5 LLAIENLSVAFRQQ-----------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRF 73 (529)
T ss_pred eEEEeceEEEecCC-----------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEE
Confidence 79999999999421 01246999999999999999999999999999999999999862 113499999
Q ss_pred CCccCCC--hh---hhc-ccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------
Q 006897 134 NCHQIKK--PA---QLR-KICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------- 198 (627)
Q Consensus 134 ~g~~~~~--~~---~~r-~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------- 198 (627)
+|+++.. .. ..+ +.+|||+|++. +++.+|+.|++.+..... .+.++.+..++++++++.+||.+
T Consensus 74 ~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (529)
T PRK15134 74 HGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH-RGMRREAARGEILNCLDRVGIRQAAKRLTD 152 (529)
T ss_pred CCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHCCCCChHHHHhh
Confidence 9988632 11 233 57999999974 667789999998754321 12345566788999999999964
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...+++|||+|| ||++||+.++..++++|++++++.|+|||++|||++ ++.++||||++|+
T Consensus 153 ~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~ 231 (529)
T PRK15134 153 YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQ 231 (529)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEE
Confidence 235677999999 999999999999999999998766899999999998 4888999999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 232 ~G~i~~~g~~~~~~ 245 (529)
T PRK15134 232 NGRCVEQNRAATLF 245 (529)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999987763
No 218
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.98 E-value=3.4e-32 Score=308.49 Aligned_cols=191 Identities=26% Similarity=0.487 Sum_probs=164.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ ++.+|+|+||++++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 338 ~i~~~~v~f~y~~~-------------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~---G~I~i~g 401 (574)
T PRK11160 338 SLTLNNVSFTYPDQ-------------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ---GEILLNG 401 (574)
T ss_pred eEEEEEEEEECCCC-------------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECC
Confidence 59999999999421 2359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG------------ 201 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------------ 201 (627)
.++.+ ...+|+.++||+|++.+|+. |++||+.++. + +..++++.++++.+++++..+
T Consensus 402 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~----~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~ 472 (574)
T PRK11160 402 QPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAA----P----NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEG 472 (574)
T ss_pred EEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCC----C----ccCHHHHHHHHHHcCCHHHHcCccccCchhcCC
Confidence 98743 46788999999999999986 9999998852 1 123456888889988876432
Q ss_pred --CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 --SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 --~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++|||||| ||++||+.+++.+.+.|+++. .++|+|++||+++. .+.||+|++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~--~~~~d~i~~l~~ 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTG--LEQFDRICVMDN 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhH--HHhCCEEEEEeC
Confidence 356999999 999999999999999999985 47999999999973 467999999999
Q ss_pred CeEEeeCCHHHHHH
Q 006897 262 GSVVHYGSLELLEE 275 (627)
Q Consensus 262 G~iv~~G~~~~~~~ 275 (627)
|++++.|+++++.+
T Consensus 549 G~i~~~g~~~~l~~ 562 (574)
T PRK11160 549 GQIIEQGTHQELLA 562 (574)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999988753
No 219
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.4e-31 Score=282.10 Aligned_cols=202 Identities=18% Similarity=0.313 Sum_probs=165.2
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSI 131 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i 131 (627)
...|+++|++++|.. +.+.+|+|+||+|++||++||+||||||||||+++|+|+.++. ..+.|+|
T Consensus 78 ~~~i~~~nls~~y~~-------------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I 144 (329)
T PRK14257 78 ANVFEIRNFNFWYMN-------------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI 144 (329)
T ss_pred CceEEEEeeEEEecC-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 347999999999942 1245999999999999999999999999999999999998641 1134999
Q ss_pred EECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHcCCc--------c
Q 006897 132 TVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMS-HKEKEDRVESLMDELGLT--------H 198 (627)
Q Consensus 132 ~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~--------~ 198 (627)
.++|+++.. ...+|+.++||||++.+++ .|++||+.|+.... +.. ++..++.+.++++.++|. +
T Consensus 145 ~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~ 221 (329)
T PRK14257 145 YFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDEVKDDLDK 221 (329)
T ss_pred EECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhC
Confidence 999998642 1356788999999999886 69999999875321 222 222345578888888873 2
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
....++|||+|| ||++||+.+...+.+.|+++.+ ++|||++||+++ .+.++||||++|+
T Consensus 222 ~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~-~i~~~~Driivl~ 298 (329)
T PRK14257 222 AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMA-QAQRISDETVFFY 298 (329)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 334567999999 9999999999999999999864 689999999998 4888899999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 299 ~G~i~e~g~~~~l~ 312 (329)
T PRK14257 299 QGWIEEAGETKTIF 312 (329)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998874
No 220
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.98 E-value=4.4e-32 Score=304.94 Aligned_cols=212 Identities=25% Similarity=0.332 Sum_probs=169.2
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++|+.+... .+.+.+.+.+|+|+||+|++||++||+||||||||||+|+|+|+++ + +|+|.+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~----~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~ 344 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGI----LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWF 344 (529)
T ss_pred CCcccccCcEEEeecCccc----cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEE
Confidence 3479999999999421000 0000013469999999999999999999999999999999999984 3 399999
Q ss_pred CCccCCC--hh---hhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----C
Q 006897 134 NCHQIKK--PA---QLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----G 201 (627)
Q Consensus 134 ~g~~~~~--~~---~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~ 201 (627)
+|+++.. .. .+++.+|||+|++ .+++.+||.||+.++...+....++++.++++.++++.+||. +.. .
T Consensus 345 ~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 424 (529)
T PRK15134 345 DGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPA 424 (529)
T ss_pred CCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCc
Confidence 9987632 11 2466799999996 478889999999987532211123445567889999999996 333 4
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
+++|||+|| ||+|||+.++..++++|++++++.|+|||++|||++ ++.++||++++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCE
Confidence 567999999 999999999999999999998766899999999998 4889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999988764
No 221
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.98 E-value=4e-32 Score=273.08 Aligned_cols=178 Identities=28% Similarity=0.423 Sum_probs=150.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKET 166 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~ 166 (627)
|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++... ....+|++|++.+++.+||.||
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~---~~~~~~v~q~~~l~~~~tv~e~ 74 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS---GGVILEGKQITEP---GPDRMVVFQNYSLLPWLTVREN 74 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCC---ChhheEEecCcccCCCCCHHHH
Confidence 579999999999999999999999999999999998864 9999999885321 1224899999999998999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CCCCCCHHHHHHHH
Q 006897 167 LMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GISGLDSTSALQVI 224 (627)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------PtsgLD~~~~~~i~ 224 (627)
+.+..........+++.++++.++++.+||++..+ .++|||+|| ||+|||+.++..+.
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 98864211122334555677899999999976554 466999998 99999999999999
Q ss_pred HHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 225 ELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 225 ~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+..
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCce
Confidence 9999998766899999999998 588999999999999999888654
No 222
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.8e-31 Score=275.24 Aligned_cols=199 Identities=23% Similarity=0.305 Sum_probs=162.0
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSI 131 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i 131 (627)
..+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|++++. ....|+|
T Consensus 18 ~~~l~~~nl~~~~~---------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (274)
T PRK14265 18 HSVFEVEGVKVFYG---------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL 82 (274)
T ss_pred CceEEEeeEEEEeC---------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence 34899999999993 245999999999999999999999999999999999998642 1124999
Q ss_pred EECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc----c----c
Q 006897 132 TVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT----H----V 199 (627)
Q Consensus 132 ~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~----~ 199 (627)
.++|+++.. ...+++.++|++|++.+++. ||.||+.++...+ +.. .+.++.++++++.+++. + .
T Consensus 83 ~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (274)
T PRK14265 83 LYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN--GYK-GNLDELVEDSLRRAAIWEEVKDKLKEK 158 (274)
T ss_pred EECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc--Cch-HHHHHHHHHHHHHcccchhhHHHhcCC
Confidence 999988632 23457789999999988875 9999999865322 111 22345567788888763 2 2
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec-
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS- 260 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~- 260 (627)
...++|||+|| ||+|||+.++..+.+.|+++++ +.|||++|||++ ++.++|||+++|+
T Consensus 159 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~-~~~~~~d~i~~l~~ 235 (274)
T PRK14265 159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQ-QASRVADWTAFFNT 235 (274)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEec
Confidence 34567999998 9999999999999999999963 689999999998 5889999999997
Q ss_pred --------CCeEEeeCCHHHHH
Q 006897 261 --------RGSVVHYGSLELLE 274 (627)
Q Consensus 261 --------~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 236 ~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 236 EIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred ccccccccCceEEEeCCHHHHH
Confidence 89999999998774
No 223
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.98 E-value=4e-32 Score=309.61 Aligned_cols=188 Identities=21% Similarity=0.344 Sum_probs=161.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|++++|++ ++++|+|+||++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||
T Consensus 340 ~i~~~~v~f~y~~--------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg 402 (592)
T PRK10790 340 RIDIDNVSFAYRD--------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE---GEIRLDG 402 (592)
T ss_pred eEEEEEEEEEeCC--------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECC
Confidence 5899999999942 2359999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++. +.+.+|++|+||||++.+|++ |++|||.++. . ..+++++++++.+|+++..
T Consensus 403 ~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~-----~----~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e 472 (592)
T PRK10790 403 RPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR-----D----ISEEQVWQALETVQLAELARSLPDGLYTPLGE 472 (592)
T ss_pred EEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC-----C----CCHHHHHHHHHHcCcHHHHHhccccccccccC
Confidence 9874 356889999999999999987 9999999862 1 1234577777777765422
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||+|| |||+||+.+++.+.+.|+++.+ ++|+|++||+++ ..+.||+|++|+
T Consensus 473 ~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~--~l~~~D~ii~l~ 548 (592)
T PRK10790 473 QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLS--TIVEADTILVLH 548 (592)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchH--HHHhCCEEEEEE
Confidence 2356999999 9999999999999999999853 689999999996 467799999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 549 ~G~i~~~G~~~~L~ 562 (592)
T PRK10790 549 RGQAVEQGTHQQLL 562 (592)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999999875
No 224
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.1e-31 Score=273.57 Aligned_cols=199 Identities=21% Similarity=0.359 Sum_probs=163.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
..|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. .++|+|.
T Consensus 15 ~~l~~~~l~~~~~---------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~ 79 (265)
T PRK14252 15 QKSEVNKLNFYYG---------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII 79 (265)
T ss_pred ceEEEEEEEEEEC---------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEE
Confidence 3699999999993 2359999999999999999999999999999999999987521 1359999
Q ss_pred ECCccCC------ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHcCCc--------
Q 006897 133 VNCHQIK------KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSH-KEKEDRVESLMDELGLT-------- 197 (627)
Q Consensus 133 i~g~~~~------~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~-------- 197 (627)
++|+++. ....+++.+||++|++.+++. |++||+.++.... +... ...++++.++++.+++.
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 80 LHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR--GVKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred EcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc--CCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 9997642 123457789999999998886 9999998865322 2222 23356788888888873
Q ss_pred cccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 198 HVAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 198 ~~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
.....++|||+|| ||+|||+.++..+.+.|+++++ +.|||++||+++ ++.++|||+++|
T Consensus 157 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~-~~~~~~d~i~~l 233 (265)
T PRK14252 157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQ-QAARVSDYTAYM 233 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHH-HHHHhCCEEEEE
Confidence 2234567999998 9999999999999999999964 589999999998 588899999999
Q ss_pred cCCeEEeeCCHHHHH
Q 006897 260 SRGSVVHYGSLELLE 274 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~ 274 (627)
++|++++.|+.+++.
T Consensus 234 ~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 234 YMGELIEFGATDTIF 248 (265)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987764
No 225
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.9e-31 Score=271.64 Aligned_cols=199 Identities=23% Similarity=0.331 Sum_probs=163.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~i 133 (627)
+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.. |...+.|+|.+
T Consensus 3 ~l~~~~v~~~~~---------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~ 67 (250)
T PRK14266 3 RIEVENLNTYFD---------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL 67 (250)
T ss_pred EEEEEeEEEEeC---------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEE
Confidence 689999999993 2459999999999999999999999999999999999865 31113499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++.. ....++.++|+||++.+++. |+.||+.+...... ....+..++++.++++.+|+.+ ...
T Consensus 68 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 145 (250)
T PRK14266 68 DGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG-EDDEDFIEERVEESLKAAALWDEVKDKLDKSAL 145 (250)
T ss_pred CCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC-CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcc
Confidence 9988632 23467789999999988885 99999988643221 1123445677889999998742 234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| |++|||+.++..+.+.|++++ + +.|||++||+++ ++.+.||++++|++|+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQ-QATRVSKYTSFFLNGE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHH-HHHhhcCEEEEEECCe
Confidence 566999998 999999999999999999995 3 789999999998 5899999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
+++.|+++++.
T Consensus 223 i~~~g~~~~~~ 233 (250)
T PRK14266 223 IIESGLTDQIF 233 (250)
T ss_pred EEEeCCHHHHH
Confidence 99999988763
No 226
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7.9e-32 Score=300.96 Aligned_cols=194 Identities=20% Similarity=0.316 Sum_probs=164.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~~---------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g 65 (501)
T PRK11288 4 YLSFDGIGKTFP---------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA---GSILIDG 65 (501)
T ss_pred eEEEeeeEEEEC---------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECC
Confidence 799999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++.. ...+++.+|||+|++.+++.+||.||+.++......+ ....+.++++.++++.+||++..+ .++|||
T Consensus 66 ~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 145 (501)
T PRK11288 66 QEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQ 145 (501)
T ss_pred EECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHH
Confidence 88632 1235678999999999999999999999863211111 234455678999999999975444 466999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++|||+++|++|+++..++
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 146 RQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRME-EIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecC
Confidence 999 9999999999999999999975 5899999999998 5889999999999999987665
No 227
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.98 E-value=1.2e-31 Score=300.85 Aligned_cols=205 Identities=20% Similarity=0.347 Sum_probs=168.3
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++|... ..+.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++ |+|.+
T Consensus 277 ~~~l~~~~l~~~~~~~----------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~ 343 (520)
T TIGR03269 277 EPIIKVRNVSKRYISV----------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS---GEVNV 343 (520)
T ss_pred CceEEEeccEEEeccC----------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEE
Confidence 3479999999999421 0122469999999999999999999999999999999999998864 99999
Q ss_pred C-Ccc---CCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----c
Q 006897 134 N-CHQ---IKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----V 199 (627)
Q Consensus 134 ~-g~~---~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~ 199 (627)
+ |.+ +.. ....++++||++|++.+++.+||.||+.+.... ..++++.++++.++++.+||.+ .
T Consensus 344 ~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 420 (520)
T TIGR03269 344 RVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL---ELPDELARMKAVITLKMVGFDEEKAEEI 420 (520)
T ss_pred ecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCCCCccchhh
Confidence 6 542 111 113456799999998899999999999886432 1233444567899999999964 2
Q ss_pred c----CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 200 A----GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 200 ~----~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
. .+++|||+|| ||+|||+.++..+++.|++++++.|.|||++|||++ ++.++|||++
T Consensus 421 ~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 421 LDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 2 4567999999 999999999999999999998766899999999998 5889999999
Q ss_pred eecCCeEEeeCCHHHHHH
Q 006897 258 ILSRGSVVHYGSLELLEE 275 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~~ 275 (627)
+|++|++++.|+++++.+
T Consensus 500 ~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 500 LMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEECCEEEEECCHHHHHh
Confidence 999999999999887654
No 228
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.7e-32 Score=299.26 Aligned_cols=193 Identities=24% Similarity=0.409 Sum_probs=161.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+|.|+.+ .+.+||+|+||+|+|||++|||||||+||||+.++|-.++.|++ |+|.+|
T Consensus 464 G~IeF~~VsFaYP~R------------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts---G~IllD 528 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR------------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS---GRILLD 528 (716)
T ss_pred ceEEEEEeeeecCCC------------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEEC
Confidence 369999999999754 34679999999999999999999999999999999999999975 999999
Q ss_pred CccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-------CccccC----
Q 006897 135 CHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG-------LTHVAG---- 201 (627)
Q Consensus 135 g~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~---- 201 (627)
|+|+. +...+|++||+|.|+|.||.. ||+|||.|+.. ..+.+ +++.+.+..+ +++-.|
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~----~~t~e----~i~~AAk~ANah~FI~~~p~gY~T~VG 599 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD----NATDE----EIEAAAKMANAHEFITNFPDGYNTVVG 599 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC----CCCHH----HHHHHHHHhChHHHHHhCccccccccC
Confidence 99985 357789999999999999986 99999999853 22333 3333333332 222222
Q ss_pred ----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 202 ----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 202 ----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
+++|||||| .||+||..++..+-+.|.++.+ ++|||+|.|+++ ..+.+|+|+++
T Consensus 600 EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLS--TV~~Ad~Ivvi 675 (716)
T KOG0058|consen 600 EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLS--TVRHADQIVVI 675 (716)
T ss_pred CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhh--HhhhccEEEEE
Confidence 456999999 6899999999999999999874 699999999998 46889999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
++|++++.|+.+|+.+
T Consensus 676 ~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 676 DKGRVVEMGTHDELLS 691 (716)
T ss_pred cCCeEEecccHHHHhh
Confidence 9999999999988864
No 229
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.98 E-value=2.2e-32 Score=317.94 Aligned_cols=189 Identities=21% Similarity=0.330 Sum_probs=159.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|+|++ .++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 477 ~I~~~~vsf~y~~-------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg 540 (710)
T TIGR03796 477 YVELRNITFGYSP-------------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDG 540 (710)
T ss_pred eEEEEEEEEecCC-------------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 5999999999952 23469999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++. +..++|+++|||+|++.+|+. |++|||.++. +. ..++++.++++..|+++..
T Consensus 541 ~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~~----~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 541 IPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----PT----IPDADLVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred EeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----CC----CCHHHHHHHHHHhCCHHHHHhCcCcccceecc
Confidence 9873 356789999999999999976 9999998741 11 1234566667766665322
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+++++.+.|++ .++|+|++||+++ ..+.||||++|+
T Consensus 612 ~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~--~i~~~D~Iivl~ 685 (710)
T TIGR03796 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLS--TIRDCDEIIVLE 685 (710)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 2356999999 9999999999999999975 3799999999997 356799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 686 ~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 686 RGKVVQRGTHEELWA 700 (710)
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999998864
No 230
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.98 E-value=4.5e-32 Score=314.41 Aligned_cols=193 Identities=25% Similarity=0.439 Sum_probs=163.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ .++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 463 ~I~~~~vsf~Y~~-------------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg 526 (694)
T TIGR03375 463 EIEFRNVSFAYPG-------------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDG 526 (694)
T ss_pred eEEEEEEEEEeCC-------------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECC
Confidence 5999999999942 23469999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++. +...+|+.++||+|++.+|+. |++|||.++. +.. .++++.++++..|+.+..
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~~~----~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e 597 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA----PYA----DDEEILRAAELAGVTEFVRRHPDGLDMQIGE 597 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCC----CCC----CHHHHHHHHHHcChHHHHHhCcccccceecC
Confidence 9874 356789999999999999986 9999998752 111 234566667766664322
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+++++.+.|+++. .++|+|++||+++ ..+.||+|++|+
T Consensus 598 ~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl~--~~~~~D~iivl~ 673 (694)
T TIGR03375 598 RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRTS--LLDLVDRIIVMD 673 (694)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHH--HHHhCCEEEEEe
Confidence 2456999999 999999999999999999986 3799999999997 467899999999
Q ss_pred CCeEEeeCCHHHHHHHH
Q 006897 261 RGSVVHYGSLELLEETI 277 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~~~ 277 (627)
+|++++.|+++++.+..
T Consensus 674 ~G~i~e~G~~~eLl~~~ 690 (694)
T TIGR03375 674 NGRIVADGPKDQVLEAL 690 (694)
T ss_pred CCEEEeeCCHHHHHHHh
Confidence 99999999999886653
No 231
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.6e-31 Score=274.22 Aligned_cols=197 Identities=22% Similarity=0.338 Sum_probs=161.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i~i 133 (627)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+.++. ..+.|+|.+
T Consensus 10 ~l~i~~v~~~~~---------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 74 (264)
T PRK14243 10 VLRTENLNVYYG---------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTF 74 (264)
T ss_pred EEEEeeeEEEEC---------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEE
Confidence 799999999993 235999999999999999999999999999999999997631 113499999
Q ss_pred CCccCC----ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--------ccC
Q 006897 134 NCHQIK----KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------VAG 201 (627)
Q Consensus 134 ~g~~~~----~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------~~~ 201 (627)
+|+++. ....+++.++|++|++.+++. |+.||+.++...+ +.. .+.++++.++++.+++.+ ...
T Consensus 75 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 150 (264)
T PRK14243 75 HGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN--GYK-GDMDELVERSLRQAALWDEVKDKLKQSGL 150 (264)
T ss_pred CCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc--Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcc
Confidence 998753 123567789999999988874 9999999875322 111 233456777788877732 233
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec---
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS--- 260 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--- 260 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++|||+++|+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~-~~~~~~d~v~~l~~~~ 227 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQ-QAARVSDMTAFFNVEL 227 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhCCEEEEEeccc
Confidence 567999998 9999999999999999999964 479999999998 5899999999998
Q ss_pred ------CCeEEeeCCHHHHH
Q 006897 261 ------RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ------~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 228 ~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 228 TEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred ccccccCceEEEeCCHHHHH
Confidence 89999999998874
No 232
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.98 E-value=3.8e-32 Score=314.98 Aligned_cols=190 Identities=22% Similarity=0.383 Sum_probs=157.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ .++.+|+|+||++++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 478 ~I~~~nVsf~Y~~~------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg 542 (711)
T TIGR00958 478 LIEFQDVSFSYPNR------------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG---GQVLLDG 542 (711)
T ss_pred eEEEEEEEEECCCC------------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECC
Confidence 59999999999532 13469999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++. +...+|++++||+|++.+|+. |++|||.++. +..+ ++++.++++..++++..
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige 613 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGL----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613 (711)
T ss_pred EEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCC----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC
Confidence 9874 346788999999999999975 9999998862 1112 34566777777665321
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+++.+.+ .. . ..++|+|++||+++ ..+.||+|++|+
T Consensus 614 ~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~--~~~~TvIiItHrl~--~i~~aD~IivL~ 687 (711)
T TIGR00958 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-S--RASRTVLLIAHRLS--TVERADQILVLK 687 (711)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c--cCCCeEEEEeccHH--HHHhCCEEEEEE
Confidence 2456999999 999999999999988 22 2 24799999999997 457799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 688 ~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 688 KGSVVEMGTHKQLME 702 (711)
T ss_pred CCEEEEeeCHHHHHh
Confidence 999999999998764
No 233
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.98 E-value=1.5e-31 Score=300.06 Aligned_cols=200 Identities=25% Similarity=0.336 Sum_probs=166.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCccceEEEC
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQDFDPRSITVN 134 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~~~~G~i~i~ 134 (627)
|+++|++++|. ++.+|+|+||++++||+++|+||||||||||+|+|+|++ +|++ |+|.++
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~---G~i~~~ 62 (520)
T TIGR03269 1 IEVKNLTKKFD---------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS---GRIIYH 62 (520)
T ss_pred CEEEEEEEEEC---------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCc---eEEEEe
Confidence 47899999993 246999999999999999999999999999999999997 5653 999987
Q ss_pred -----------------------CccC-------CC-----hhhhcccEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCC
Q 006897 135 -----------------------CHQI-------KK-----PAQLRKICGFVAQE-DNLLPLLTVKETLMFSANFRLKGM 178 (627)
Q Consensus 135 -----------------------g~~~-------~~-----~~~~r~~ig~v~Q~-~~l~~~lTV~e~l~~~~~~~~~~~ 178 (627)
|.++ .. ....++.++|++|+ +.+++.+||+||+.++.... +.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~--~~ 140 (520)
T TIGR03269 63 VALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI--GY 140 (520)
T ss_pred ccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc--CC
Confidence 2221 00 02346679999997 67888899999999875432 23
Q ss_pred CHHHHHHHHHHHHHHcCCcccc----CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCC
Q 006897 179 SHKEKEDRVESLMDELGLTHVA----GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQR 236 (627)
Q Consensus 179 ~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~ 236 (627)
+.++.++++.++++.+||++.. .+++|||+|| ||++||+.++..++++|++++++.|+
T Consensus 141 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 141 EGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 4455667899999999997654 4566999999 99999999999999999999776689
Q ss_pred EEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHH
Q 006897 237 TVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETI 277 (627)
Q Consensus 237 Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~ 277 (627)
|||++|||++ .+.++||++++|++|++++.|+++++.+.+
T Consensus 221 tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 9999999998 478899999999999999999988775543
No 234
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.98 E-value=8.8e-32 Score=300.70 Aligned_cols=200 Identities=20% Similarity=0.294 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|. .++|+|.++|
T Consensus 1 ~l~i~~l~~~~~---------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g 64 (500)
T TIGR02633 1 LLEMKGIVKTFG---------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSG 64 (500)
T ss_pred CEEEEeEEEEeC---------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECC
Confidence 378999999993 245999999999999999999999999999999999999862 1249999999
Q ss_pred ccCCC--hh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHcCCcccc-----CCcCC
Q 006897 136 HQIKK--PA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG--MSHKEKEDRVESLMDELGLTHVA-----GSFVG 205 (627)
Q Consensus 136 ~~~~~--~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~-----~~~~g 205 (627)
+++.. .. ..++.+|||||++.+++.+||.||+.++......+ ...++.+++++++++.+||.+.. .+++|
T Consensus 65 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 144 (500)
T TIGR02633 65 SPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGG 144 (500)
T ss_pred EECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCH
Confidence 88632 11 23567999999998999999999998864322111 23345567889999999997542 35679
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|+++..
T Consensus 145 G~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 145 GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLN-EVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeee
Confidence 99999 9999999999999999999975 5899999999998 58899999999999999999
Q ss_pred CCHHHH
Q 006897 268 GSLELL 273 (627)
Q Consensus 268 G~~~~~ 273 (627)
|+++++
T Consensus 223 ~~~~~~ 228 (500)
T TIGR02633 223 KDMSTM 228 (500)
T ss_pred cCcccC
Confidence 877543
No 235
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.98 E-value=1.1e-31 Score=269.98 Aligned_cols=186 Identities=18% Similarity=0.265 Sum_probs=153.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CccceEEECCccCCChhhhcccEEEEccCCC--CCCCCC
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD-FDPRSITVNCHQIKKPAQLRKICGFVAQEDN--LLPLLT 162 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~-~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~--l~~~lT 162 (627)
+|+|+||++++||+++|+||||||||||+|+|+|+++|.. .+.|+|.++|+++......++.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 5899999999999999999999999999999999998720 0139999999886432222357999999974 556789
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc---ccc----CCcCCccccC------------------CCCCCCH
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT---HVA----GSFVGDEENR------------------GISGLDS 217 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~----~~~~gGe~qr------------------PtsgLD~ 217 (627)
+.||+.+..... +...++.++++.++++.+|++ +.. ..++|||+|| ||+|||+
T Consensus 81 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~ 158 (230)
T TIGR02770 81 MGNHAIETLRSL--GKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158 (230)
T ss_pred HHHHHHHHHHHc--CccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 999998765322 122344567799999999997 333 3566999998 9999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 218 TSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 218 ~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 159 VNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999997656899999999998 588899999999999999999988764
No 236
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.2e-31 Score=271.46 Aligned_cols=197 Identities=20% Similarity=0.276 Sum_probs=163.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~i 133 (627)
.+.+++++++|. ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|.. .+.|+|.+
T Consensus 8 ~~~~~~~~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~ 72 (261)
T PRK14263 8 VMDCKLDKIFYG---------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF 72 (261)
T ss_pred eEEEEeEEEEeC---------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEE
Confidence 589999999993 3469999999999999999999999999999999999997621 13499999
Q ss_pred CCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------cC
Q 006897 134 NCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV--------AG 201 (627)
Q Consensus 134 ~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~--------~~ 201 (627)
+|+++.. ...+++.++|++|++.++ .+|+.||+.++...+ .. .++..+++.++++.++|.+. ..
T Consensus 73 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~ 148 (261)
T PRK14263 73 LGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLN--RY-KGDLGDRVKHALQGAALWDEVKDKLKVSGL 148 (261)
T ss_pred CCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhc--Cc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcc
Confidence 9988632 124567899999999888 489999999875432 11 23445678999999998532 13
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec---
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS--- 260 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--- 260 (627)
.++|||+|| ||+|||+.++.++.+.|++++ + ++|+|++||+++ ++.++|||+++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 467999998 999999999999999999995 3 689999999998 5889999999995
Q ss_pred -----CCeEEeeCCHHHHH
Q 006897 261 -----RGSVVHYGSLELLE 274 (627)
Q Consensus 261 -----~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 226 ~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 226 SQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred ccccCCceEEEeCCHHHHH
Confidence 89999999988764
No 237
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.98 E-value=9.5e-32 Score=289.26 Aligned_cols=195 Identities=21% Similarity=0.332 Sum_probs=169.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
+.++++|++|+|+ ..++|+||||++++||++||+|.||||||||+|+|+|.++|++ |+|.++
T Consensus 7 ~ll~~~~i~K~Fg---------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~---G~I~~~ 68 (500)
T COG1129 7 PLLELRGISKSFG---------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILID 68 (500)
T ss_pred ceeeeecceEEcC---------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCC---ceEEEC
Confidence 4799999999993 4579999999999999999999999999999999999999975 999999
Q ss_pred CccCC--Chh-hhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHcCCccccCC----cCC
Q 006897 135 CHQIK--KPA-QLRKICGFVAQEDNLLPLLTVKETLMFSANFRL--KGMSHKEKEDRVESLMDELGLTHVAGS----FVG 205 (627)
Q Consensus 135 g~~~~--~~~-~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~g 205 (627)
|++.. ++. .....|+.|+|+..+.|+|||.||+.++...+. ..++++..++++.++|+.+|+....++ +++
T Consensus 69 G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~Lsi 148 (500)
T COG1129 69 GKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSI 148 (500)
T ss_pred CEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCH
Confidence 99863 333 345679999999999999999999998764432 124678889999999999998533444 446
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||||- ||+.|+......+++.++++++ +|.+||+|||.++ |++++||||.||++|+.+..
T Consensus 149 aqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 149 AQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYISHRLD-EVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeee
Confidence 78875 9999999999999999999975 6999999999999 79999999999999999988
Q ss_pred CC
Q 006897 268 GS 269 (627)
Q Consensus 268 G~ 269 (627)
++
T Consensus 227 ~~ 228 (500)
T COG1129 227 RP 228 (500)
T ss_pred cc
Confidence 77
No 238
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=7.2e-32 Score=277.31 Aligned_cols=189 Identities=21% Similarity=0.315 Sum_probs=158.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ .+ |+|.++|
T Consensus 2 ~i~~~nls~~~~~~-------------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~---G~I~i~g 64 (275)
T cd03289 2 QMTVKDLTAKYTEG-------------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE---GDIQIDG 64 (275)
T ss_pred eEEEEEEEEEeCCC-------------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CC---cEEEECC
Confidence 48899999999421 2358999999999999999999999999999999999986 32 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC-----------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----------- 202 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----------- 202 (627)
.++.. ...+|+.++|+||++.+|+. |++||+.... ..+ .+++.++++.+||++..++
T Consensus 65 ~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~-----~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~ 134 (275)
T cd03289 65 VSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG-----KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVD 134 (275)
T ss_pred EEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc-----CCC----HHHHHHHHHHcCCHHHHHhCcccccceecC
Confidence 88632 35678899999999999985 9999996321 112 2457788889999764433
Q ss_pred ----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 203 ----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 203 ----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
++|||+|| ||++||+.+...+.+.|+++. .++|||++||+++ .+. .|||+++|+
T Consensus 135 ~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~-~i~-~~dri~vl~ 210 (275)
T cd03289 135 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIE-AML-ECQRFLVIE 210 (275)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHH-HHH-hCCEEEEec
Confidence 67899998 999999999999999999874 4799999999997 354 599999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++..
T Consensus 211 ~G~i~~~g~~~~l~~ 225 (275)
T cd03289 211 ENKVRQYDSIQKLLN 225 (275)
T ss_pred CCeEeecCCHHHHhh
Confidence 999999999998754
No 239
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.97 E-value=2e-31 Score=260.94 Aligned_cols=172 Identities=44% Similarity=0.700 Sum_probs=145.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~~~~G~i~i 133 (627)
.|+++||+++|+... ....+.+|+|+||++++||+++|+||||||||||+++|+|++ +|.. |+|.+
T Consensus 3 ~l~~~~ls~~~~~~~---------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~---G~i~~ 70 (194)
T cd03213 3 TLSFRNLTVTVKSSP---------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS---GEVLI 70 (194)
T ss_pred EEEEEeeEEEEecCC---------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc---eEEEE
Confidence 589999999995210 001246999999999999999999999999999999999999 8754 99999
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC---
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR--- 210 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr--- 210 (627)
+|+++.. ...++.++|++|++.+++.+|++||+.+..... .++|||+||
T Consensus 71 ~g~~~~~-~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~---------------------------~LS~G~~qrv~l 122 (194)
T cd03213 71 NGRPLDK-RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR---------------------------GLSGGERKRVSI 122 (194)
T ss_pred CCEeCch-HhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---------------------------cCCHHHHHHHHH
Confidence 9998543 356778999999999999899999998753210 566777776
Q ss_pred ---------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ---------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ---------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|++|||+.+++.+.+.|+++++ +|+|+|++||+++.++.++||++++|++|++++.|
T Consensus 123 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 123 ALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999975 48999999999964477899999999999998754
No 240
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.97 E-value=8.2e-32 Score=272.02 Aligned_cols=194 Identities=25% Similarity=0.456 Sum_probs=154.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
++++|++++|+. +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 i~~~~l~~~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~ 64 (237)
T cd03252 1 ITFEHVRFRYKP-------------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN---GRVLVDGH 64 (237)
T ss_pred CEEEEEEEecCC-------------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCe
Confidence 478999999942 12459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHHHc--CCcc----ccCCc
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKE-----DRVESLMDEL--GLTH----VAGSF 203 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~----~~~~~ 203 (627)
++.. ...+++.++|++|++.+++ .||.||+.+... ........ ..+.++++.+ +++. ....+
T Consensus 65 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~L 139 (237)
T cd03252 65 DLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGL 139 (237)
T ss_pred ehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcC
Confidence 7532 3456778999999988875 699999987421 11111111 1234455555 4433 34567
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++ + |+|||++||+++. + +.||++++|++|+++
T Consensus 140 SgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~ 215 (237)
T cd03252 140 SGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLST-V-KNADRIIVMEKGRIV 215 (237)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEE
Confidence 7999998 999999999999999999985 3 8999999999984 5 569999999999999
Q ss_pred eeCCHHHHHH
Q 006897 266 HYGSLELLEE 275 (627)
Q Consensus 266 ~~G~~~~~~~ 275 (627)
+.|+++++.+
T Consensus 216 ~~~~~~~~~~ 225 (237)
T cd03252 216 EQGSHDELLA 225 (237)
T ss_pred EEcCHHHHHh
Confidence 9999887643
No 241
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.6e-31 Score=274.52 Aligned_cols=202 Identities=24% Similarity=0.374 Sum_probs=162.7
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccceE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ--DFDPRSI 131 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~--~~~~G~i 131 (627)
+.+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. ..+.|+|
T Consensus 43 ~~~l~i~nl~~~~~---------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I 107 (305)
T PRK14264 43 DAKLSVEDLDVYYG---------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV 107 (305)
T ss_pred CceEEEEEEEEEeC---------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 45799999999993 245999999999999999999999999999999999998631 0134999
Q ss_pred EECCccCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC----------CCC-HHHHHHHHHHHHHHcCC
Q 006897 132 TVNCHQIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK----------GMS-HKEKEDRVESLMDELGL 196 (627)
Q Consensus 132 ~i~g~~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~----------~~~-~~~~~~~v~~~l~~lgL 196 (627)
.++|+++.. ...+++.++|++|++.+++. ||+||+.++...+.. +.. .+..++++.++++.+++
T Consensus 108 ~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 186 (305)
T PRK14264 108 ELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL 186 (305)
T ss_pred EECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC
Confidence 999987632 23456789999999988874 999999987532100 111 22345678899999987
Q ss_pred cc--------ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHH
Q 006897 197 TH--------VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRIL 250 (627)
Q Consensus 197 ~~--------~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~ 250 (627)
.+ ....++|||+|| ||+|||+.++..+.++|+++++ ++|||++||+++ .+.
T Consensus 187 ~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~-~i~ 263 (305)
T PRK14264 187 WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQ-QAA 263 (305)
T ss_pred chhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-HHH
Confidence 42 234567999998 9999999999999999999975 489999999998 478
Q ss_pred HHhhhh-eeecCCeEEeeCCHHHHH
Q 006897 251 QYISKF-LILSRGSVVHYGSLELLE 274 (627)
Q Consensus 251 ~~~D~i-~vL~~G~iv~~G~~~~~~ 274 (627)
++||++ ++|++|++++.|+++++.
T Consensus 264 ~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 264 RISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HhcCEEEEEecCCEEEEeCCHHHHH
Confidence 899997 578999999999987764
No 242
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.97 E-value=5.7e-31 Score=268.38 Aligned_cols=198 Identities=21% Similarity=0.323 Sum_probs=160.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR--VRDQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl--~~~~~~~~G~i~i 133 (627)
+|+++||++.|+ ++.+|+|+||++++||++||+||||||||||+++|+|+ ++|+ .|+|.+
T Consensus 7 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~ 68 (252)
T CHL00131 7 ILEIKNLHASVN---------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILF 68 (252)
T ss_pred eEEEEeEEEEeC---------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEE
Confidence 799999999993 23599999999999999999999999999999999998 3554 399999
Q ss_pred CCccCCC--hhhhcc-cEEEEccCCCCCCCCCHHHHHHHHHHhcC--CC---CCHHHHHHHHHHHHHHcCCcc-cc----
Q 006897 134 NCHQIKK--PAQLRK-ICGFVAQEDNLLPLLTVKETLMFSANFRL--KG---MSHKEKEDRVESLMDELGLTH-VA---- 200 (627)
Q Consensus 134 ~g~~~~~--~~~~r~-~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~--~~---~~~~~~~~~v~~~l~~lgL~~-~~---- 200 (627)
+|+++.. ....++ .++|++|++.+++.+|+.+++.+...... .. ....+..+++.++++.+|+.+ ..
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 148 (252)
T CHL00131 69 KGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV 148 (252)
T ss_pred CCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccc
Confidence 9988632 222233 48899999999999999999987543111 00 112234567889999999962 22
Q ss_pred C-CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hhhheeec
Q 006897 201 G-SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-ISKFLILS 260 (627)
Q Consensus 201 ~-~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D~i~vL~ 260 (627)
. .++|||+|| ||+|||+.++..+.++|+++++ .|+|||++||+++. +... ||++++|+
T Consensus 149 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~-~~~~~~d~i~~l~ 226 (252)
T CHL00131 149 NEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRL-LDYIKPDYVHVMQ 226 (252)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-HHhhhCCEEEEEe
Confidence 2 478999998 9999999999999999999975 58999999999984 6666 89999999
Q ss_pred CCeEEeeCCHHHH
Q 006897 261 RGSVVHYGSLELL 273 (627)
Q Consensus 261 ~G~iv~~G~~~~~ 273 (627)
+|++++.|+++.+
T Consensus 227 ~G~i~~~~~~~~~ 239 (252)
T CHL00131 227 NGKIIKTGDAELA 239 (252)
T ss_pred CCEEEEecChhhh
Confidence 9999999998743
No 243
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.97 E-value=1.7e-31 Score=263.76 Aligned_cols=178 Identities=24% Similarity=0.406 Sum_probs=149.2
Q ss_pred EEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 59 VRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 59 ~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|+++
T Consensus 1 i~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~ 62 (206)
T TIGR03608 1 LKNISKKFG---------------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGKET 62 (206)
T ss_pred CcceEEEEC---------------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEc
Confidence 478999983 2459999999999999999999999999999999999998864 9999999884
Q ss_pred CC------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccc
Q 006897 139 KK------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEE 208 (627)
Q Consensus 139 ~~------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~ 208 (627)
.. ....++.++|++|++.+++.+|++||+.+..... +..+.+..++++++++.+||++..+ .++|||+
T Consensus 63 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~ 140 (206)
T TIGR03608 63 PPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK--KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQ 140 (206)
T ss_pred cccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHH
Confidence 21 1134678999999999999899999999865422 2334556678999999999976554 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
|| ||+|||+.++..+.+.|+++++ .|.|||++||+++ ..+.||++++|
T Consensus 141 qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 141 QRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 98 9999999999999999999976 4899999999997 34689999875
No 244
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.5e-31 Score=259.96 Aligned_cols=169 Identities=31% Similarity=0.537 Sum_probs=143.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR--DQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~--~~~~~~G~i~i 133 (627)
.|+++|+++.|+.. ..++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |+ .|+|.+
T Consensus 3 ~l~~~~l~~~~~~~-----------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~ 68 (192)
T cd03232 3 VLTWKNLNYTVPVK-----------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILI 68 (192)
T ss_pred EEEEeeeEEEecCC-----------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEE
Confidence 68999999999421 012469999999999999999999999999999999999864 43 499999
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC---
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR--- 210 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr--- 210 (627)
+|+++. ...++.++|++|++.+++.+|++||+.++...+ .++|||+||
T Consensus 69 ~g~~~~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~LSgGe~qrv~l 119 (192)
T cd03232 69 NGRPLD--KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR---------------------------GLSVEQRKRLTI 119 (192)
T ss_pred CCEehH--HHhhhceEEecccCccccCCcHHHHHHHHHHHh---------------------------cCCHHHhHHHHH
Confidence 998853 456678999999998999899999998753210 667888877
Q ss_pred ---------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC-CeEEeeC
Q 006897 211 ---------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR-GSVVHYG 268 (627)
Q Consensus 211 ---------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~-G~iv~~G 268 (627)
|++|||+.++..+.+.|+++++ .|+|||++||+++.++.+.||++++|++ |++++.|
T Consensus 120 a~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 120 GVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999875 4899999999997336789999999999 9999865
No 245
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=243.23 Aligned_cols=196 Identities=26% Similarity=0.425 Sum_probs=173.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|+++.|+ ..++|.||+++.++||.+.++||||||||||+|.|.=+..|.+ |+..+.|
T Consensus 2 sirv~~in~~yg---------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~s---g~l~ia~ 63 (242)
T COG4161 2 SIQLNGINCFYG---------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAG 63 (242)
T ss_pred ceEEcccccccc---------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCC---CeEEecc
Confidence 488999999993 4568999999999999999999999999999999998877764 9999877
Q ss_pred ccCC--C------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC---
Q 006897 136 HQIK--K------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV--- 204 (627)
Q Consensus 136 ~~~~--~------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~--- 204 (627)
.... + ..++|+.+|+|||+-+++|.+||.||+.-+. ++..++++++.+.++.++|+.+.|.+.+|+.+
T Consensus 64 ~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhl 142 (242)
T COG4161 64 NHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHL 142 (242)
T ss_pred cccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHHhCCCHHHHHHHHHHHHHHhccccccccCceec
Confidence 6531 1 2468899999999999999999999998753 45567788899999999999999999998765
Q ss_pred -CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 205 -GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 205 -gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
|||+|| ||++|||.-..++++++++++. .|.|-+++||..+. ..+.+.+++.|++|+|+
T Consensus 143 sggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev~v-a~k~as~vvyme~g~iv 220 (242)
T COG4161 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEVEV-ARKTASRVVYMENGHIV 220 (242)
T ss_pred ccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeehhH-HHhhhhheEeeecCeeE
Confidence 999999 9999999999999999999975 69999999999985 77899999999999999
Q ss_pred eeCCHHH
Q 006897 266 HYGSLEL 272 (627)
Q Consensus 266 ~~G~~~~ 272 (627)
+.|+.+-
T Consensus 221 e~g~a~~ 227 (242)
T COG4161 221 EQGDASC 227 (242)
T ss_pred eecchhh
Confidence 9998753
No 246
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.5e-32 Score=270.10 Aligned_cols=190 Identities=24% Similarity=0.410 Sum_probs=152.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|++++|+. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|.+ |+|.++|
T Consensus 2 ~l~~~~l~~~~~~--------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 64 (229)
T cd03254 2 EIEFENVNFSYDE--------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDG 64 (229)
T ss_pred eEEEEEEEEecCC--------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECC
Confidence 4789999999941 2358999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-----------Cccc---
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG-----------LTHV--- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-----------L~~~--- 199 (627)
.++.. ...+++.++|++|++.+++. |++||+.+.... ... +++.+.++.++ ++..
T Consensus 65 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 135 (229)
T cd03254 65 IDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGE 135 (229)
T ss_pred EeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC----CCH----HHHHHHHHHhChHHHHHhCcccccCHhhc
Confidence 87532 34567789999999988876 999999875211 111 22333333333 3222
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| ||+|||+.++..+++.|++++ + |+|||++||+++ ++ +.||++++|+
T Consensus 136 ~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~-~~~d~i~~l~ 211 (229)
T cd03254 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLS-TI-KNADKILVLD 211 (229)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HH-hhCCEEEEEe
Confidence 24667999998 999999999999999999985 3 899999999998 35 4699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+.+++.+
T Consensus 212 ~g~~~~~~~~~~~~~ 226 (229)
T cd03254 212 DGKIIEEGTHDELLA 226 (229)
T ss_pred CCeEEEeCCHHHHHh
Confidence 999999998876643
No 247
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-31 Score=297.76 Aligned_cols=194 Identities=21% Similarity=0.291 Sum_probs=163.5
Q ss_pred EEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 59 VRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 59 ~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++
T Consensus 1 ~~nl~~~~~---------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~ 62 (491)
T PRK10982 1 MSNISKSFP---------------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS---GSILFQGKEI 62 (491)
T ss_pred CCceEEEeC---------------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCEEC
Confidence 468999993 2469999999999999999999999999999999999999864 9999999886
Q ss_pred CC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 139 KK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG--MSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 139 ~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
.. ....++.++|++|++.+++.+||+||+.++... ..+ .+.++..++++++++.+|+++..+ +++|||+|
T Consensus 63 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q 141 (491)
T PRK10982 63 DFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP-TKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQ 141 (491)
T ss_pred CCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccc-ccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHH
Confidence 32 123467899999999888899999999876321 111 133445567899999999976544 56799999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|+++
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLA 219 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChh
Confidence 9 9999999999999999999975 5899999999998 588999999999999999999876
Q ss_pred HH
Q 006897 272 LL 273 (627)
Q Consensus 272 ~~ 273 (627)
++
T Consensus 220 ~~ 221 (491)
T PRK10982 220 GL 221 (491)
T ss_pred hC
Confidence 64
No 248
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.8e-31 Score=268.90 Aligned_cols=194 Identities=27% Similarity=0.423 Sum_probs=155.2
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+.+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|+
T Consensus 1 i~~~~l~~~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~ 64 (234)
T cd03251 1 VEFKNVTFRYPGD-------------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS---GRILIDGH 64 (234)
T ss_pred CEEEEEEEEeCCC-------------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCC---CEEEECCE
Confidence 4789999999421 1358999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCcccc----CCc
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED-----RVESLMDEL--GLTHVA----GSF 203 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~----~~~ 203 (627)
++.. ....++.++|++|++.+++ .||+||+.+.... ....+..+ .+.+.++.+ ++++.. ..+
T Consensus 65 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 139 (234)
T cd03251 65 DVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG----ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKL 139 (234)
T ss_pred EhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcC
Confidence 7532 3456778999999998887 5999999875311 11121111 245556655 555433 456
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++ + ++|||++||+++ ++.. ||++++|++|+++
T Consensus 140 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~ 215 (234)
T cd03251 140 SGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIV 215 (234)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHhh-CCEEEEecCCeEe
Confidence 7999998 999999999999999999985 3 789999999998 4654 9999999999999
Q ss_pred eeCCHHHHHH
Q 006897 266 HYGSLELLEE 275 (627)
Q Consensus 266 ~~G~~~~~~~ 275 (627)
+.|+++++.+
T Consensus 216 ~~~~~~~~~~ 225 (234)
T cd03251 216 ERGTHEELLA 225 (234)
T ss_pred eeCCHHHHHH
Confidence 9999887654
No 249
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-31 Score=273.12 Aligned_cols=197 Identities=19% Similarity=0.356 Sum_probs=158.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+. |+|.++|
T Consensus 6 ~l~~~~l~~~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 68 (272)
T PRK15056 6 GIVVNDVTVTWRN--------------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS---GKISILG 68 (272)
T ss_pred eEEEEeEEEEecC--------------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 6999999999941 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCC--CCCCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLL--PLLTVKETLMFSANFR--LKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDE 207 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~--~~lTV~e~l~~~~~~~--~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe 207 (627)
+++.. ...++.++|++|++.+. ...+++|++.++.... .......+.+++++++++.+||.+..+ .++|||
T Consensus 69 ~~i~~-~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~ 147 (272)
T PRK15056 69 QPTRQ-ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQ 147 (272)
T ss_pred EEhHH-hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHH
Confidence 87531 22234699999997642 2347899987642100 001122334567888999999976554 456999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||+++++ +|++++.|+
T Consensus 148 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~ 224 (272)
T PRK15056 148 KKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGP 224 (272)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecC
Confidence 998 9999999999999999999975 4899999999998 488999999877 899999999
Q ss_pred HHHH
Q 006897 270 LELL 273 (627)
Q Consensus 270 ~~~~ 273 (627)
++++
T Consensus 225 ~~~~ 228 (272)
T PRK15056 225 TETT 228 (272)
T ss_pred HHhc
Confidence 8775
No 250
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.97 E-value=6.5e-32 Score=313.76 Aligned_cols=190 Identities=22% Similarity=0.423 Sum_probs=159.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|+|+. ++++|+|+|++|++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 473 ~I~~~~vsf~y~~--------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~---G~I~idg 535 (708)
T TIGR01193 473 DIVINDVSYSYGY--------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS---GEILLNG 535 (708)
T ss_pred cEEEEEEEEEcCC--------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC---cEEEECC
Confidence 5999999999942 2469999999999999999999999999999999999999964 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++. +..++|+++|||+|++.+|+. |++|||.++.. +..+ ++++.++++..|+++.
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e 607 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSE 607 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecC
Confidence 9873 356789999999999999986 99999998621 1112 3445666666665432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||||| |||+||+.+++.+.+.|+++ .|+|+|++||+++ ..+.||+|++|+
T Consensus 608 ~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~~~~~D~i~~l~ 682 (708)
T TIGR01193 608 EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--VAKQSDKIIVLD 682 (708)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--HHHcCCEEEEEE
Confidence 13456999999 99999999999999999875 3789999999997 467899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 683 ~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 683 HGKIIEQGSHDELLD 697 (708)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
No 251
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.97 E-value=1.1e-31 Score=268.00 Aligned_cols=183 Identities=25% Similarity=0.481 Sum_probs=150.8
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|+++.|+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+.+|+. |+|.++|+
T Consensus 3 l~~~~l~~~~~~-------------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~ 66 (220)
T cd03245 3 IEFRNVSFSYPN-------------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS---GSVLLDGT 66 (220)
T ss_pred EEEEEEEEEcCC-------------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CeEEECCE
Confidence 789999999942 12459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc--------------
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA-------------- 200 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------------- 200 (627)
++.. ....++.++|++|++.+++ .|+.||+.+... ... .+++.++++.+++.+..
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 137 (220)
T cd03245 67 DIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGER 137 (220)
T ss_pred EhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCC
Confidence 7532 2345678999999998887 599999976421 111 23456777888876533
Q ss_pred -CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 -GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 -~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ ++|||++||+++. + ++||++++|++
T Consensus 138 ~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~-~-~~~d~v~~l~~ 213 (220)
T cd03245 138 GRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSL-L-DLVDRIIVMDS 213 (220)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHH-H-HhCCEEEEEeC
Confidence 3677999998 9999999999999999999864 3899999999973 4 79999999999
Q ss_pred CeEEeeC
Q 006897 262 GSVVHYG 268 (627)
Q Consensus 262 G~iv~~G 268 (627)
|++++.|
T Consensus 214 g~i~~~~ 220 (220)
T cd03245 214 GRIVADG 220 (220)
T ss_pred CeEeecC
Confidence 9998754
No 252
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=2.7e-31 Score=280.16 Aligned_cols=194 Identities=23% Similarity=0.382 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|++|.|+ ...+++||||++++||+.||+|+||||||||+++|.|+++|++ |+|.++|
T Consensus 4 ~l~~~~itK~f~---------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~---GeI~v~G 65 (501)
T COG3845 4 ALEMRGITKRFP---------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDG 65 (501)
T ss_pred eEEEeccEEEcC---------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCc---ceEEECC
Confidence 689999999994 4579999999999999999999999999999999999999975 9999999
Q ss_pred ccCC--Ch-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcc
Q 006897 136 HQIK--KP-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFR-LKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDE 207 (627)
Q Consensus 136 ~~~~--~~-~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe 207 (627)
+++. ++ ...+..||+|+|+..|+|++||.||+.++.... ....+.++.+++++++.++.||+--.+. ++-||
T Consensus 66 ~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~ 145 (501)
T COG3845 66 KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGE 145 (501)
T ss_pred EEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcch
Confidence 9872 33 456778999999999999999999999986432 1234667888999999999999744444 44688
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
||| ||+-|-|...+++++.|+++++ .|+|||++||.++ |+.++|||+.||.+|+++..-+
T Consensus 146 qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 146 QQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred hHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 888 9999999999999999999986 5999999999999 7999999999999999876544
No 253
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.97 E-value=8.1e-32 Score=305.47 Aligned_cols=194 Identities=26% Similarity=0.445 Sum_probs=158.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ ++++|+|+||++++||.+||+||||||||||+++|.|+++|++ |+|.+||
T Consensus 328 ~I~f~~vsf~y~~--------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~---G~I~idg 390 (567)
T COG1132 328 SIEFENVSFSYPG--------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS---GEILIDG 390 (567)
T ss_pred eEEEEEEEEEcCC--------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECC
Confidence 5999999999952 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH-----HHHHHHc--CCcccc----CC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV-----ESLMDEL--GLTHVA----GS 202 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v-----~~~l~~l--gL~~~~----~~ 202 (627)
.++.+ ...+|++||+|||++.+|.. ||+|||.++.. ..++++..+.+ .+.++.+ |++... ..
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~ 465 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRP----DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVN 465 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCC----CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCcc
Confidence 99743 57889999999999999985 99999998731 12333322222 2223333 333322 24
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||||| |||+||+.+...+.+.++++. +++|+|+++|+++. + +.||+|++|++|++
T Consensus 466 LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i 541 (567)
T COG1132 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRLST-I-KNADRIIVLDNGRI 541 (567)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccHhH-H-HhCCEEEEEECCEE
Confidence 56899999 899999999999999999886 36899999999984 5 45999999999999
Q ss_pred EeeCCHHHHHH
Q 006897 265 VHYGSLELLEE 275 (627)
Q Consensus 265 v~~G~~~~~~~ 275 (627)
++.|+++++..
T Consensus 542 ~e~G~h~eLl~ 552 (567)
T COG1132 542 VERGTHEELLA 552 (567)
T ss_pred EEecCHHHHHH
Confidence 99999999865
No 254
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.97 E-value=2.1e-31 Score=303.29 Aligned_cols=189 Identities=24% Similarity=0.414 Sum_probs=158.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ .+.+|+|+|+++++||.++|+|+||||||||+|+|+|+++|.+ |+|.+||
T Consensus 334 ~I~~~~vsf~y~~--------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~---G~I~i~g 396 (588)
T PRK13657 334 AVEFDDVSFSYDN--------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS---GRILIDG 396 (588)
T ss_pred eEEEEEEEEEeCC--------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECC
Confidence 5999999999942 1358999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.+ ...+|++|+||||++.+|+. |++||+.++. +..+ ++++.++++.+|+++.
T Consensus 397 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~ 467 (588)
T PRK13657 397 TDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGE 467 (588)
T ss_pred EEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC----CCCC----HHHHHHHHHHhCHHHHHHhCcccccchhcC
Confidence 98743 46788999999999999976 9999998752 1112 3345555555554321
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| |||+||+.+++.+.+.|+++. .++|+|++||+++ ..+.||++++|+
T Consensus 468 ~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~--~~~~~D~ii~l~ 543 (588)
T PRK13657 468 RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLS--TVRNADRILVFD 543 (588)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHH--HHHhCCEEEEEE
Confidence 12466999999 999999999999999999874 3799999999996 468899999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+.+++.
T Consensus 544 ~G~i~~~g~~~~l~ 557 (588)
T PRK13657 544 NGRVVESGSFDELV 557 (588)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999998774
No 255
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=5.9e-31 Score=261.69 Aligned_cols=181 Identities=17% Similarity=0.299 Sum_probs=153.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|++++|+ ++.+++|+||++++||+++|+||||||||||+|+|+|+++|+. |+|.++
T Consensus 10 ~~l~~~~l~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~ 71 (214)
T PRK13543 10 PLLAAHALAFSRN---------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES---GQIQID 71 (214)
T ss_pred ceEEEeeEEEecC---------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---eeEEEC
Confidence 4799999999993 2359999999999999999999999999999999999999864 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
|+++.. ...++.++|++|++.+++.+|+.||+.+....+ + ...+++++++++.++|.+..+ .++|||+||
T Consensus 72 g~~i~~-~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 145 (214)
T PRK13543 72 GKTATR-GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH--G---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKR 145 (214)
T ss_pred CEEccc-hhhhhceEEeecCcccccCCcHHHHHHHHHHhc--C---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHH
Confidence 988543 234567999999998898899999998865432 1 123456788999999876554 456999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
||+|||+.+++.+.+.|+++++ .|.|+|++|||++ ++.++||++++++.
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 146 LALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecChh-hhhhhcceEEEEee
Confidence 9999999999999999999876 4899999999998 58999999998863
No 256
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.1e-31 Score=296.51 Aligned_cols=202 Identities=17% Similarity=0.309 Sum_probs=165.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccceEEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRD-QDFDPRSITV 133 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~-~~~~~G~i~i 133 (627)
.+|+++||+++|+.+ +++++|+|+||+|++||++||+||||||||||+|+|+|+++| ++ |+|.+
T Consensus 258 ~~l~~~~l~~~~~~~------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~---G~i~~ 322 (506)
T PRK13549 258 VILEVRNLTAWDPVN------------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE---GEIFI 322 (506)
T ss_pred ceEEEecCccccccc------------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---cEEEE
Confidence 479999999998311 124599999999999999999999999999999999999984 53 99999
Q ss_pred CCccCCC---hhhhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHcCCc-cccC--
Q 006897 134 NCHQIKK---PAQLRKICGFVAQED---NLLPLLTVKETLMFSANFRLKG---MSHKEKEDRVESLMDELGLT-HVAG-- 201 (627)
Q Consensus 134 ~g~~~~~---~~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~-~~~~-- 201 (627)
+|+++.. ....++.+||++|++ .+++.+||.||+.++....... .++++.+++++++++.+|+. +..+
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 402 (506)
T PRK13549 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA 402 (506)
T ss_pred CCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc
Confidence 9987532 123456799999995 4788899999998763211111 12344557789999999996 4443
Q ss_pred --CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 --SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 --~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
+++|||||| ||+|||+.++..+.++|+++++ .|+|||++|||++ ++.++|||+++|++
T Consensus 403 ~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~-~~~~~~d~v~~l~~ 480 (506)
T PRK13549 403 IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELP-EVLGLSDRVLVMHE 480 (506)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhCCEEEEEEC
Confidence 566999999 9999999999999999999986 4899999999998 58899999999999
Q ss_pred CeEEeeCCHHHH
Q 006897 262 GSVVHYGSLELL 273 (627)
Q Consensus 262 G~iv~~G~~~~~ 273 (627)
|+++..|+++++
T Consensus 481 G~i~~~~~~~~~ 492 (506)
T PRK13549 481 GKLKGDLINHNL 492 (506)
T ss_pred CEEEEEeccccC
Confidence 999999887654
No 257
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.97 E-value=3.4e-31 Score=267.73 Aligned_cols=196 Identities=26% Similarity=0.367 Sum_probs=153.1
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
++++|+++.|+.. +++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 1 l~i~~l~~~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~ 65 (238)
T cd03249 1 IEFKNVSFRYPSR------------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS---GEILLDGV 65 (238)
T ss_pred CeEEEEEEecCCC------------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCC---CEEEECCE
Confidence 4789999999421 12459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCcc----ccCCc
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED-----RVESLMDEL--GLTH----VAGSF 203 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~----~~~~~ 203 (627)
++.. ....++.++|++|++.+++ .||+||+.+.... ...++..+ .+.+.++.+ +++. ....+
T Consensus 66 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 140 (238)
T cd03249 66 DIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQL 140 (238)
T ss_pred ehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC----CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccC
Confidence 7532 2345677999999988886 5999999875311 11111111 123333333 3332 23466
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++ +|+|||++||+++ ++. .||++++|++|+++
T Consensus 141 S~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~ 216 (238)
T cd03249 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVV 216 (238)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEE
Confidence 7999998 999999999999999999985 4899999999998 464 89999999999999
Q ss_pred eeCCHHHHHHH
Q 006897 266 HYGSLELLEET 276 (627)
Q Consensus 266 ~~G~~~~~~~~ 276 (627)
+.|+.+++.+.
T Consensus 217 ~~~~~~~~~~~ 227 (238)
T cd03249 217 EQGTHDELMAQ 227 (238)
T ss_pred EeCCHHHHhhc
Confidence 99998776543
No 258
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.3e-31 Score=253.91 Aligned_cols=172 Identities=30% Similarity=0.458 Sum_probs=133.3
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
++++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~ 62 (173)
T cd03230 1 IEVRNLSKRYG---------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---GEIKVLGK 62 (173)
T ss_pred CEEEEEEEEEC---------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCE
Confidence 46899999993 2358999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCC
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGL 215 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgL 215 (627)
++.. ....++.++|++|++.+++.+|+.||+.+ +..+ ++++.=+...+. + .+-++-. .||+||
T Consensus 63 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~L---------S~G~-~qrv~laral~~-~--p~illlD---EPt~~L 126 (173)
T cd03230 63 DIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL---------SGGM-KQRLALAQALLH-D--PELLILD---EPTSGL 126 (173)
T ss_pred EcccchHhhhccEEEEecCCccccCCcHHHHhhc---------CHHH-HHHHHHHHHHHc-C--CCEEEEe---CCccCC
Confidence 7532 23556789999999999998999999851 1111 111111111110 0 0000011 199999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 216 DSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 216 D~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
|+.++..+.+.|++++++ |.|+|++||+++ ++.++||++++|++|++
T Consensus 127 D~~~~~~l~~~l~~~~~~-g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 127 DPESRREFWELLRELKKE-GKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 999999999999999865 899999999998 57889999999999974
No 259
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3e-31 Score=256.19 Aligned_cols=156 Identities=31% Similarity=0.472 Sum_probs=134.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++++++|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 1 i~~~~l~~~~~---------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (178)
T cd03229 1 LELKNVSKRYG---------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGE 62 (178)
T ss_pred CEEEEEEEEEC---------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 47899999993 2459999999999999999999999999999999999998864 99999998
Q ss_pred cCCC----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC--
Q 006897 137 QIKK----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr-- 210 (627)
++.. ....++.++|++|++.+++.+|++||+.+. ++|||+||
T Consensus 63 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------------------------lS~G~~qr~~ 110 (178)
T cd03229 63 DLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------------------------LSGGQQQRVA 110 (178)
T ss_pred EccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec--------------------------------CCHHHHHHHH
Confidence 7632 235677899999999988889999998653 33444433
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.++||++++|++|+
T Consensus 111 la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 999999999999999999998754799999999998 4778999999999885
No 260
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=7.5e-31 Score=259.02 Aligned_cols=179 Identities=22% Similarity=0.360 Sum_probs=150.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|
T Consensus 1 ~l~~~~l~~~~~---------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~v~~~g 62 (204)
T PRK13538 1 MLEARNLACERD---------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQG 62 (204)
T ss_pred CeEEEEEEEEEC---------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 478999999993 2459999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
+++.. ....++.++|++|++.+++.+|+.||+.+....+ + .+.+++++++++.+||++..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 137 (204)
T PRK13538 63 EPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH--G---PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRR 137 (204)
T ss_pred EEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc--C---ccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHH
Confidence 88632 2345678999999999999899999999875432 1 123467889999999976554 456999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
||+|||+.++..+.+.|+++++ .|.|||++|||++. +....+|++++
T Consensus 138 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 138 VALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhh-hccCCceEEec
Confidence 9999999999999999999975 48899999999984 66655677666
No 261
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=5.8e-31 Score=267.62 Aligned_cols=179 Identities=24% Similarity=0.366 Sum_probs=150.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCCCCCCCCCH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
+|+|+||++++||+++|+||||||||||+++|+|+.++ .|+|.++|+++.. ....++.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 69999999999999999999999999999999999853 3999999988632 33456679999999888888999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-------------------------CCCC
Q 006897 164 KETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-------------------------GISG 214 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-------------------------Ptsg 214 (627)
+||+.+.... ....++..++++++++.+||.+..+ .++|||+|| ||+|
T Consensus 87 ~~nl~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~ 163 (248)
T PRK03695 87 FQYLTLHQPD---KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNS 163 (248)
T ss_pred HHHHHhcCcc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCccc
Confidence 9999886321 1233445678899999999976544 455777643 7899
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 215 LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 215 LD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+.++..+.++|+++++ +|+|||++||+++ ++.++||++++|++|++++.|+.+++
T Consensus 164 LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 164 LDVAQQAALDRLLSELCQ-QGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999975 4899999999998 58899999999999999999998765
No 262
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.97 E-value=1e-30 Score=265.99 Aligned_cols=181 Identities=24% Similarity=0.417 Sum_probs=152.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~~---------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~~ 65 (251)
T PRK09544 4 LVSLENVSVSFG---------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE---GVIKRNG 65 (251)
T ss_pred EEEEeceEEEEC---------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 799999999993 2359999999999999999999999999999999999999864 9999876
Q ss_pred ccCCChhhhcccEEEEccCCCCCCC--CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPL--LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~--lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
+..++|++|++.+++. .|+.+++.+. .+. .++++.++++.+||.+..+ .++|||+|
T Consensus 66 ---------~~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~q 127 (251)
T PRK09544 66 ---------KLRIGYVPQKLYLDTTLPLTVNRFLRLR-----PGT----KKEDILPALKRVQAGHLIDAPMQKLSGGETQ 127 (251)
T ss_pred ---------ccCEEEeccccccccccChhHHHHHhcc-----ccc----cHHHHHHHHHHcCChHHHhCChhhCCHHHHH
Confidence 2359999999877765 3788876542 111 1345788999999976554 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.||++++|++ ++++.|+++
T Consensus 128 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~ 205 (251)
T PRK09544 128 RVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPE 205 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHH
Confidence 8 999999999999999999997655899999999998 58899999999965 799999988
Q ss_pred HHH
Q 006897 272 LLE 274 (627)
Q Consensus 272 ~~~ 274 (627)
++.
T Consensus 206 ~~~ 208 (251)
T PRK09544 206 VVS 208 (251)
T ss_pred HHh
Confidence 763
No 263
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.97 E-value=3.5e-31 Score=300.73 Aligned_cols=191 Identities=23% Similarity=0.348 Sum_probs=161.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++. ++.+|+|+||++++||.++|+|+||||||||+|+|+|+++|.+ |+|.+||
T Consensus 330 ~i~~~~v~f~y~~~-------------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~---G~I~i~g 393 (571)
T TIGR02203 330 DVEFRNVTFRYPGR-------------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS---GQILLDG 393 (571)
T ss_pred eEEEEEEEEEcCCC-------------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECC
Confidence 59999999999421 2469999999999999999999999999999999999999864 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++. +..+++++++||||++.+|+. |++|||.++. + ++..+++++++++.+|+++..
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~---~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~ 465 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGR----T---EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE 465 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCC----C---CCCCHHHHHHHHHHcChHHHHHhCcCcccceecC
Confidence 8863 346788999999999999986 9999998752 1 112245566777777664321
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+++.+++.|+++. .++|+|++||+++ ..+.||+|++|+
T Consensus 466 ~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~--~~~~~D~ii~l~ 541 (571)
T TIGR02203 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLS--TIEKADRIVVMD 541 (571)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhH--HHHhCCEEEEEe
Confidence 2356999999 999999999999999999885 3689999999996 578899999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+.+++.
T Consensus 542 ~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 542 DGRIVERGTHNELL 555 (571)
T ss_pred CCEEEeeCCHHHHH
Confidence 99999999998874
No 264
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.6e-32 Score=248.32 Aligned_cols=174 Identities=24% Similarity=0.412 Sum_probs=153.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC--ChhhhcccEEEEccCCCCCC
Q 006897 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK--KPAQLRKICGFVAQEDNLLP 159 (627)
Q Consensus 82 ~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~--~~~~~r~~ig~v~Q~~~l~~ 159 (627)
++.++|+++||++++||..+|+||||||||||+|+++-++.|++ |++++.|+++. +++.+|++|+|+.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~---G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC---ceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 34579999999999999999999999999999999999999974 99999999974 36789999999999999998
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-----cCCcCCccccC------------------CCCCCC
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-----AGSFVGDEENR------------------GISGLD 216 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr------------------PtsgLD 216 (627)
. ||+||+.|+-.+|... ..+++..+.|+++++.+. ...++|||+|| |||+||
T Consensus 91 ~-tVeDNlifP~~~r~rr----~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD 165 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRR----PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALD 165 (223)
T ss_pred c-chhhccccchHHhccC----CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcC
Confidence 7 9999999987666432 245667889999998753 34567999999 899999
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
+.+++.|-++|.++.++++.+++++|||.+ +..+.+|+++-+..|++
T Consensus 166 ~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 166 ESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 999999999999999888999999999998 47899999999999875
No 265
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=5.2e-31 Score=305.46 Aligned_cols=191 Identities=23% Similarity=0.432 Sum_probs=158.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ +++.+|+|+||++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||
T Consensus 455 ~i~~~~vsf~y~~-------------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~---G~I~idg 518 (694)
T TIGR01846 455 AITFENIRFRYAP-------------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDG 518 (694)
T ss_pred eEEEEEEEEEcCC-------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECC
Confidence 5999999999942 22459999999999999999999999999999999999999864 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++. +..++|+.++||+|++.+|+. |++|||.++. +..+ ++++.++++..|+++.
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 9874 346789999999999999986 9999998742 1122 3345555555554332
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| ||++||+.+++.+.+.|+++. .++|+|++||+++. .+.||++++|+
T Consensus 590 ~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~--~~~~d~ii~l~ 665 (694)
T TIGR01846 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLST--VRACDRIIVLE 665 (694)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHH--HHhCCEEEEEe
Confidence 23456999999 999999999999999999984 47999999999973 46799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 666 ~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 666 KGQIAESGRHEELLA 680 (694)
T ss_pred CCEEEEeCCHHHHHH
Confidence 999999999988754
No 266
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.97 E-value=2.7e-30 Score=262.77 Aligned_cols=199 Identities=22% Similarity=0.338 Sum_probs=157.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~~~~G~i~i 133 (627)
+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++ +|+ .|+|.+
T Consensus 1 ~i~~~nl~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~ 62 (248)
T PRK09580 1 MLSIKDLHVSVE---------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEF 62 (248)
T ss_pred CeEEEEEEEEeC---------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEE
Confidence 478999999993 235999999999999999999999999999999999995 464 399999
Q ss_pred CCccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHH-hcC-CC---CCHHHHHHHHHHHHHHcCCc-ccc----
Q 006897 134 NCHQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSAN-FRL-KG---MSHKEKEDRVESLMDELGLT-HVA---- 200 (627)
Q Consensus 134 ~g~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~-~~~-~~---~~~~~~~~~v~~~l~~lgL~-~~~---- 200 (627)
+|+++.. ... .++.++|++|++.+++.+|+.+++.+... ... .. ....+..++++++++.+++. +..
T Consensus 63 ~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (248)
T PRK09580 63 KGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV 142 (248)
T ss_pred CCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC
Confidence 9987632 222 23579999999988888887777654321 110 00 11223456788899999984 222
Q ss_pred -CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hhhheeec
Q 006897 201 -GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-ISKFLILS 260 (627)
Q Consensus 201 -~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D~i~vL~ 260 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++|||++. +... +|++++|+
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~-~~~~~~d~i~~l~ 220 (248)
T PRK09580 143 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRI-LDYIKPDYVHVLY 220 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-HHhhhCCEEEEEE
Confidence 2578999998 9999999999999999999975 58999999999984 6666 89999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++.+.
T Consensus 221 ~g~i~~~g~~~~~~ 234 (248)
T PRK09580 221 QGRIVKSGDFTLVK 234 (248)
T ss_pred CCeEEEeCCHHHHH
Confidence 99999999988553
No 267
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.8e-31 Score=294.14 Aligned_cols=194 Identities=16% Similarity=0.380 Sum_probs=160.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|+++.|. .+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 264 ~~l~~~~l~~~~~-----------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~ 323 (510)
T PRK09700 264 TVFEVRNVTSRDR-----------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG---GEIRLN 323 (510)
T ss_pred cEEEEeCccccCC-----------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEEC
Confidence 4799999998651 28999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--h-hhhcccEEEEccC---CCCCCCCCHHHHHHHHHHhc---CC---C-CCHHHHHHHHHHHHHHcCCc-ccc
Q 006897 135 CHQIKK--P-AQLRKICGFVAQE---DNLLPLLTVKETLMFSANFR---LK---G-MSHKEKEDRVESLMDELGLT-HVA 200 (627)
Q Consensus 135 g~~~~~--~-~~~r~~ig~v~Q~---~~l~~~lTV~e~l~~~~~~~---~~---~-~~~~~~~~~v~~~l~~lgL~-~~~ 200 (627)
|+++.. . ...++.+|||+|+ ..+++.+||.||+.++...+ .. + ...++.+++++++++.+||. +..
T Consensus 324 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 403 (510)
T PRK09700 324 GKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV 403 (510)
T ss_pred CEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc
Confidence 987532 1 2356789999998 46888999999998753211 00 1 12233446788999999996 554
Q ss_pred C----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 201 G----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 201 ~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
+ .++|||||| ||+|||+.++..++++|+++++ .|+|||++|||++ ++.++|||+++
T Consensus 404 ~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~-~~~~~~d~i~~ 481 (510)
T PRK09700 404 NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELP-EIITVCDRIAV 481 (510)
T ss_pred cCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHhhCCEEEE
Confidence 4 456999999 9999999999999999999976 4899999999998 58899999999
Q ss_pred ecCCeEEeeCCH
Q 006897 259 LSRGSVVHYGSL 270 (627)
Q Consensus 259 L~~G~iv~~G~~ 270 (627)
|++|++++.++.
T Consensus 482 l~~G~i~~~~~~ 493 (510)
T PRK09700 482 FCEGRLTQILTN 493 (510)
T ss_pred EECCEEEEEecC
Confidence 999999988765
No 268
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=1.1e-30 Score=253.16 Aligned_cols=155 Identities=23% Similarity=0.405 Sum_probs=134.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++| +|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~-------------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 61 (182)
T cd03215 4 VLEVRGLSVKG-------------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDG 61 (182)
T ss_pred EEEEeccEEEe-------------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 69999999877 6999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC---hhhhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCcccc
Q 006897 136 HQIKK---PAQLRKICGFVAQED---NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEEN 209 (627)
Q Consensus 136 ~~~~~---~~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~q 209 (627)
+++.. ....++.++|++|++ .+++.+|++||+.+... ++|||+|
T Consensus 62 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------LS~G~~q 111 (182)
T cd03215 62 KPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------LSGGNQQ 111 (182)
T ss_pred EECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------cCHHHHH
Confidence 88643 224567899999984 57888999999987531 4455555
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
| |++|||+.++..+.+.|+++++ .|+|+|++||+++ ++.++||++++|++|++
T Consensus 112 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 5 9999999999999999999975 4899999999998 58899999999999974
No 269
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.8e-30 Score=247.52 Aligned_cols=211 Identities=25% Similarity=0.349 Sum_probs=177.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++..+ +++||++||++|++||+.+|+||||||||||.++|+|.-. ...+.|+|.++
T Consensus 2 ~~L~I~dLhv~v~~--------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~ 66 (251)
T COG0396 2 MMLEIKDLHVEVEG--------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFD 66 (251)
T ss_pred ceeEEeeeEEEecC--------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEEC
Confidence 37999999999832 1479999999999999999999999999999999999853 34466999999
Q ss_pred CccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCcc-ccCCc-----C
Q 006897 135 CHQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTH-VAGSF-----V 204 (627)
Q Consensus 135 g~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~-~~~~~-----~ 204 (627)
|+++.+ .++.|..+..-+|.|.=+|..|+.+.|..+...+.... ...+..+++++.++.+++++ .+++. +
T Consensus 67 GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFS 146 (251)
T COG0396 67 GEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFS 146 (251)
T ss_pred CcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcC
Confidence 999854 35677889999999999999999999998765432110 12466788999999999986 45554 4
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh--hhheeecCCeE
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI--SKFLILSRGSV 264 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~--D~i~vL~~G~i 264 (627)
||||+| |=||||..+-+.+-+.+.+++. .|.+++++||... +.++. |++.+|.+|+|
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy~r--ll~~i~pD~vhvl~~GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHYQR--LLDYIKPDKVHVLYDGRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecHHH--HHhhcCCCEEEEEECCEE
Confidence 999999 7799999999999999999976 5999999999875 67877 99999999999
Q ss_pred EeeCCHHHHHHHHHhcCCCC
Q 006897 265 VHYGSLELLEETINNLGYQI 284 (627)
Q Consensus 265 v~~G~~~~~~~~~~~~g~~~ 284 (627)
+..|.+ ++.+.+++.||.+
T Consensus 224 v~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 224 VKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred EecCCH-HHHHHHHHhchHH
Confidence 999999 8888888888864
No 270
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.97 E-value=4.5e-31 Score=300.19 Aligned_cols=192 Identities=22% Similarity=0.383 Sum_probs=159.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ .++.+|+|+||++++||.++|+||||||||||+|+|+|+++|.+ |+|.+||
T Consensus 337 ~i~~~~v~f~y~~~------------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~---G~I~i~g 401 (576)
T TIGR02204 337 EIEFEQVNFAYPAR------------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS---GRILLDG 401 (576)
T ss_pred eEEEEEEEEECCCC------------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECC
Confidence 58999999999531 12469999999999999999999999999999999999999864 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++. +...+++.++|+||++.+|+. |++|||.++. +..+ +++++++++.+|+.+.
T Consensus 402 ~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~ 472 (576)
T TIGR02204 402 VDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR----PDAT----DEEVEAAARAAHAHEFISALPEGYDTYLGE 472 (576)
T ss_pred EEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC----CCCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCC
Confidence 8864 346788899999999999976 9999998752 1112 3456666666665422
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| |||+||+.+++.+++.|+++. .++|+|++||+++ ..+.||++++|+
T Consensus 473 ~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~--~~~~~d~vi~l~ 548 (576)
T TIGR02204 473 RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLA--TVLKADRIVVMD 548 (576)
T ss_pred CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchH--HHHhCCEEEEEE
Confidence 22356999998 999999999999999999985 3799999999996 467899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 549 ~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 549 QGRIVAQGTHAELIA 563 (576)
T ss_pred CCEEEeeecHHHHHH
Confidence 999999999887643
No 271
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=6e-31 Score=262.87 Aligned_cols=184 Identities=23% Similarity=0.350 Sum_probs=149.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|++++|+. .++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. |+|.++|
T Consensus 2 ~l~~~~l~~~~~~-------------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 65 (221)
T cd03244 2 DIEFKNVSLRYRP-------------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS---GSILIDG 65 (221)
T ss_pred cEEEEEEEEecCC-------------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECC
Confidence 3789999999942 12469999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++.. ...+++.++|++|++.+++ .|++||+.+.. ... .+++.+.++.+++.+.
T Consensus 66 ~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~-----~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 135 (221)
T cd03244 66 VDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG-----EYS----DEELWQALERVGLKEFVESLPGGLDTVVEE 135 (221)
T ss_pred EEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC-----CCC----HHHHHHHHHHhCcHHHHHhccccccccccc
Confidence 87532 3456788999999998876 59999996431 111 2345556666665432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| ||+|||+.++..+.+.|+++.+ +.|||++||+++ ++. .||++++|+
T Consensus 136 ~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~ 211 (221)
T cd03244 136 GGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLD-TII-DSDRILVLD 211 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HHh-hCCEEEEEE
Confidence 24566999998 9999999999999999999853 689999999998 465 599999999
Q ss_pred CCeEEeeCC
Q 006897 261 RGSVVHYGS 269 (627)
Q Consensus 261 ~G~iv~~G~ 269 (627)
+|++++.|+
T Consensus 212 ~g~~~~~~~ 220 (221)
T cd03244 212 KGRVVEFDS 220 (221)
T ss_pred CCeEEecCC
Confidence 999998875
No 272
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.5e-31 Score=264.06 Aligned_cols=193 Identities=26% Similarity=0.421 Sum_probs=151.8
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+|+. |+|.++|+
T Consensus 1 l~~~~l~~~~~~--------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~v~~~g~ 63 (236)
T cd03253 1 IEFENVTFAYDP--------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS---GSILIDGQ 63 (236)
T ss_pred CEEEEEEEEeCC--------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCE
Confidence 478999999931 2358999999999999999999999999999999999998864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCcc----ccCCc
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED-----RVESLMDEL--GLTH----VAGSF 203 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~----~~~~~ 203 (627)
++.. ...+++.++|++|++.+++ .|++||+.+... .....+..+ .+.+.++.+ +++. ....+
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~L 138 (236)
T cd03253 64 DIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP----DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKL 138 (236)
T ss_pred EhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC----CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcC
Confidence 7532 3456778999999998886 599999987531 111111111 123333333 3332 23467
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++..+.+.|++++ + |+|||++||+++. +. .||++++|++|+++
T Consensus 139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~-~~-~~d~~~~l~~g~i~ 214 (236)
T cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLST-IV-NADKIIVLKDGRIV 214 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHH-HH-hCCEEEEEECCEEE
Confidence 7999998 999999999999999999985 4 8999999999984 64 59999999999999
Q ss_pred eeCCHHHHHH
Q 006897 266 HYGSLELLEE 275 (627)
Q Consensus 266 ~~G~~~~~~~ 275 (627)
+.|+.+++.+
T Consensus 215 ~~~~~~~~~~ 224 (236)
T cd03253 215 ERGTHEELLA 224 (236)
T ss_pred eeCCHHHHhh
Confidence 9998876643
No 273
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=1.3e-30 Score=256.67 Aligned_cols=175 Identities=22% Similarity=0.321 Sum_probs=149.1
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||++.|+ ++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~i~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (201)
T cd03231 1 LEADELTCERD---------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGG 62 (201)
T ss_pred CEEEEEEEEeC---------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCE
Confidence 47899999993 2458999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
++.. ...+++.++|++|++.+++.+|++||+.+.... ..+++++++++.+|+.+..++ ++|||+||
T Consensus 63 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 134 (201)
T cd03231 63 PLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD--------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRV 134 (201)
T ss_pred ecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc--------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHH
Confidence 8532 245677899999999888889999999875311 124568899999999765544 56999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
||+|||+.++..+.+.|+++++ .|.|+|++||++. ++...||+++++
T Consensus 135 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 135 ALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999875 4899999999988 478899999877
No 274
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=1.1e-30 Score=258.51 Aligned_cols=182 Identities=20% Similarity=0.317 Sum_probs=149.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|++++|+.. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|.+ |+|.++|
T Consensus 6 ~l~~~~l~~~~~~~-------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g 69 (207)
T cd03369 6 EIEVENLSVRYAPD-------------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE---GKIEIDG 69 (207)
T ss_pred eEEEEEEEEEeCCC-------------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECC
Confidence 58999999999421 2358999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC---
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR--- 210 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr--- 210 (627)
+++.. ..+.++.++|++|++.+++. |++||+.+.. .... +++.+.++ ++.....++|||+||
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~-----~~~~----~~~~~~l~---~~~~~~~LS~G~~qrv~l 136 (207)
T cd03369 70 IDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD-----EYSD----EEIYGALR---VSEGGLNLSQGQRQLLCL 136 (207)
T ss_pred EEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC-----CCCH----HHHHHHhh---ccCCCCcCCHHHHHHHHH
Confidence 87532 33467789999999988874 9999996531 1121 22344444 556667888999998
Q ss_pred ---------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 211 ---------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 211 ---------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
||+|||+.++..+.++|+++. .|+|+|++||+++. +.. ||++++|++|+++..|++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~~~-~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRLRT-IID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHH-Hhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999984 38999999999984 554 999999999999988753
No 275
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=9.3e-31 Score=291.75 Aligned_cols=189 Identities=24% Similarity=0.313 Sum_probs=158.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~---G~i~~~~ 64 (490)
T PRK10938 3 SLQISQGTFRLS---------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS---GERQSQF 64 (490)
T ss_pred eEEEEeEEEEcC---------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---ceEEECC
Confidence 699999999993 2359999999999999999999999999999999999998864 9999998
Q ss_pred ccCCC--hhhhcccEEEEccCCCC--C-C-----CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNL--L-P-----LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG---- 201 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l--~-~-----~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~---- 201 (627)
.++.. ....++.+||++|++.. + + .+||+|++.+. .+.+++++++++.+||++..+
T Consensus 65 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~ 134 (490)
T PRK10938 65 SHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE----------VKDPARCEQLAQQFGITALLDRRFK 134 (490)
T ss_pred cccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc----------hhHHHHHHHHHHHcCCHhhhhCCcc
Confidence 76532 23455679999998642 1 1 46888887542 123467889999999976544
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
+++|||+|| ||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~-~~~~~~d~v~~l~~G~ 212 (490)
T PRK10938 135 YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFD-EIPDFVQFAGVLADCT 212 (490)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhCCEEEEEECCE
Confidence 556999999 99999999999999999999764 899999999998 5889999999999999
Q ss_pred EEeeCCHHHHH
Q 006897 264 VVHYGSLELLE 274 (627)
Q Consensus 264 iv~~G~~~~~~ 274 (627)
++..|+++++.
T Consensus 213 i~~~~~~~~~~ 223 (490)
T PRK10938 213 LAETGEREEIL 223 (490)
T ss_pred EEEeCCHHHHh
Confidence 99999987653
No 276
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.97 E-value=1.6e-30 Score=255.87 Aligned_cols=171 Identities=25% Similarity=0.366 Sum_probs=140.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCccceEEEC
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQDFDPRSITVN 134 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~~~~G~i~i~ 134 (627)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+. +|+ .|+|.++
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~ 62 (200)
T cd03217 1 LEIKDLHVSVG---------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFK 62 (200)
T ss_pred CeEEEEEEEeC---------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEEC
Confidence 47899999993 235999999999999999999999999999999999994 554 3999999
Q ss_pred CccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC-
Q 006897 135 CHQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR- 210 (627)
Q Consensus 135 g~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr- 210 (627)
|+++.. ... .++.++|++|++.+++.+++++++.- ....++|||+||
T Consensus 63 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~-----------------------------~~~~LS~G~~qrv 113 (200)
T cd03217 63 GEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY-----------------------------VNEGFSGGEKKRN 113 (200)
T ss_pred CEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh-----------------------------ccccCCHHHHHHH
Confidence 998643 122 24569999999999998899888711 012345666655
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHH-HhhhheeecCCeEEeeCCHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ-YISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~~ 272 (627)
||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+ +||++++|++|++++.|+.+
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~- 190 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE- 190 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-
Confidence 9999999999999999999975 4899999999998 4666 79999999999999999554
Q ss_pred HHHHH
Q 006897 273 LEETI 277 (627)
Q Consensus 273 ~~~~~ 277 (627)
+.+++
T Consensus 191 ~~~~~ 195 (200)
T cd03217 191 LALEI 195 (200)
T ss_pred HHhhh
Confidence 44444
No 277
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=1.3e-30 Score=294.12 Aligned_cols=196 Identities=26% Similarity=0.433 Sum_probs=158.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|++++|++ +++++|+|+||++++||.++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 316 ~i~~~~v~~~y~~-------------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g 379 (544)
T TIGR01842 316 HLSVENVTIVPPG-------------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS---GSVRLDG 379 (544)
T ss_pred eEEEEEEEEEcCC-------------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 5999999999942 22468999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCccc----cCC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED-----RVESLMDEL--GLTHV----AGS 202 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~----~~~ 202 (627)
.++.+ ...+|+.++||+|++.+|+. |++||+.+.. +..+.++..+ .+++.++.+ |++.. ...
T Consensus 380 ~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~ 454 (544)
T TIGR01842 380 ADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG----ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGAT 454 (544)
T ss_pred EehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC----CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCC
Confidence 88643 45678899999999999986 9999998542 1122222211 223444444 44432 345
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||++||+.++..+.+.|+++.. .|+|+|++||+++ ..+.||++++|++|++
T Consensus 455 LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G~i 531 (544)
T TIGR01842 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDGRI 531 (544)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEE
Confidence 67999999 9999999999999999999853 4799999999997 3578999999999999
Q ss_pred EeeCCHHHHHH
Q 006897 265 VHYGSLELLEE 275 (627)
Q Consensus 265 v~~G~~~~~~~ 275 (627)
++.|+++++.+
T Consensus 532 ~~~g~~~~l~~ 542 (544)
T TIGR01842 532 ARFGERDEVLA 542 (544)
T ss_pred EeeCCHHHHhh
Confidence 99999887753
No 278
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=9.8e-30 Score=260.41 Aligned_cols=203 Identities=19% Similarity=0.292 Sum_probs=164.2
Q ss_pred ceEEEEeEEEEEccCcccccc----c-ccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc
Q 006897 55 CKVTVRNLSYAIQPNTSILSH----L-LHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR 129 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~----~-~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G 129 (627)
+.++++||++.|+..+....+ + .......+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+. |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~---G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV---G 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---e
Confidence 358999999999764211000 1 1112345679999999999999999999999999999999999999864 9
Q ss_pred eEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 130 SITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 130 ~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
+|.++|+ +++++|+..+.+.+|+.||+.+..... +.+.++..+.++++++.++|.+..+ .++|
T Consensus 80 ~I~~~g~-----------~~~~~~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 146 (264)
T PRK13546 80 KVDRNGE-----------VSVIAISAGLSGQLTGIENIEFKMLCM--GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSS 146 (264)
T ss_pred EEEECCE-----------EeEEecccCCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCH
Confidence 9999884 356778777778899999998764332 2344555667788899999876554 4669
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| ||+|||+.++..+++.|.++++ .|+|||++||+++ ++.++||++++|++|++++.
T Consensus 147 Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~ 224 (264)
T PRK13546 147 GMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDY 224 (264)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEe
Confidence 99998 9999999999999999999965 5899999999998 48889999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+.+++.+
T Consensus 225 g~~~~~~~ 232 (264)
T PRK13546 225 GELDDVLP 232 (264)
T ss_pred CCHHHHHH
Confidence 99887754
No 279
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=1.5e-30 Score=290.74 Aligned_cols=201 Identities=17% Similarity=0.276 Sum_probs=164.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccceEEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRD-QDFDPRSITV 133 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~-~~~~~G~i~i 133 (627)
.+|+++|++++|..+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++| ++ |+|.+
T Consensus 256 ~~l~~~~l~~~~~~~------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~---G~i~~ 320 (500)
T TIGR02633 256 VILEARNLTCWDVIN------------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE---GNVFI 320 (500)
T ss_pred ceEEEeCCccccccc------------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---eEEEE
Confidence 479999999988311 123589999999999999999999999999999999999985 43 99999
Q ss_pred CCccCCC---hhhhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHcCCcc-ccC--
Q 006897 134 NCHQIKK---PAQLRKICGFVAQED---NLLPLLTVKETLMFSANFRLK---GMSHKEKEDRVESLMDELGLTH-VAG-- 201 (627)
Q Consensus 134 ~g~~~~~---~~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~-~~~-- 201 (627)
+|+++.. ...+++++|||+|+. .+++.+||+||+.++...... .....+.+++++++++.+++.+ ..+
T Consensus 321 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 400 (500)
T TIGR02633 321 NGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP 400 (500)
T ss_pred CCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc
Confidence 9988632 134567899999995 588899999999885321111 1123345577899999999963 343
Q ss_pred --CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 --SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 --~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++|||||| ||+|||+.++..++++|++++++ |.|||++|||++ ++.++||++++|++
T Consensus 401 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~-~~~~~~d~v~~l~~ 478 (500)
T TIGR02633 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELA-EVLGLSDRVLVIGE 478 (500)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHH-HHHHhCCEEEEEEC
Confidence 567999999 99999999999999999999764 899999999998 58899999999999
Q ss_pred CeEEeeCCHHH
Q 006897 262 GSVVHYGSLEL 272 (627)
Q Consensus 262 G~iv~~G~~~~ 272 (627)
|+++..++.++
T Consensus 479 G~i~~~~~~~~ 489 (500)
T TIGR02633 479 GKLKGDFVNHA 489 (500)
T ss_pred CEEEEEEcccc
Confidence 99998776543
No 280
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=3.7e-30 Score=254.65 Aligned_cols=177 Identities=24% Similarity=0.417 Sum_probs=147.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 2 ~l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 63 (207)
T PRK13539 2 MLEGEDLACVRG---------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDG 63 (207)
T ss_pred EEEEEeEEEEEC---------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC
Confidence 689999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
+++... ..++.++|++|++.+++.+|++||+.+....+ +. .++++.++++.+||.+..+ .++|||+||
T Consensus 64 ~~~~~~-~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 136 (207)
T PRK13539 64 GDIDDP-DVAEACHYLGHRNAMKPALTVAENLEFWAAFL--GG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRV 136 (207)
T ss_pred EeCcch-hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc--CC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHH
Confidence 874322 26778999999988888899999998865332 11 1245889999999976544 456999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.. |+++-++.
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 9999999999999999999876 4899999999998 3554 88877744
No 281
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=2.4e-29 Score=288.26 Aligned_cols=199 Identities=23% Similarity=0.417 Sum_probs=167.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+.. ++.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 4 ~l~~~nl~~~y~~~-----------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g 69 (648)
T PRK10535 4 LLELKDIRRSYPSG-----------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS---GTYRVAG 69 (648)
T ss_pred EEEEeeEEEEeCCC-----------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECC
Confidence 79999999999421 123469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhh---h-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 136 HQIKK--PAQ---L-RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 136 ~~~~~--~~~---~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
+++.. .++ . ++.++|++|++.+++.+|+.||+.+.... .+...++.++++.++++.+||++..+ +++|
T Consensus 70 ~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~ 147 (648)
T PRK10535 70 QDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVY--AGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSG 147 (648)
T ss_pred EEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCH
Confidence 98643 222 2 46899999999999999999999986532 22344566778999999999987554 4569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||+|| |++|||+.+++.+.++|+++++ .|+|+|++||+++. .+.|||+++|++|++++.
T Consensus 148 Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~--~~~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 148 GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQV--AAQAERVIEIRDGEIVRN 224 (648)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHH--HHhCCEEEEEECCEEEee
Confidence 99998 9999999999999999999975 58999999999973 467999999999999999
Q ss_pred CCHHHH
Q 006897 268 GSLELL 273 (627)
Q Consensus 268 G~~~~~ 273 (627)
|++++.
T Consensus 225 g~~~~~ 230 (648)
T PRK10535 225 PPAQEK 230 (648)
T ss_pred cCcccc
Confidence 987643
No 282
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=2.1e-30 Score=259.58 Aligned_cols=180 Identities=24% Similarity=0.384 Sum_probs=148.3
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
+.++|++++|. .+++|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|+
T Consensus 23 l~~~~~~~~~~---------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~ 84 (224)
T cd03220 23 LGILGRKGEVG---------------EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGR 84 (224)
T ss_pred hhhhhhhhhcC---------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCE
Confidence 67888888883 3569999999999999999999999999999999999998864 99999998
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC--
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-- 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-- 210 (627)
++.. . .+...+.+.+||+||+.+..... +....+.++++.++++.+||++..+ .++|||+||
T Consensus 85 ~~~~---~-------~~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 152 (224)
T cd03220 85 VSSL---L-------GLGGGFNPELTGRENIYLNGRLL--GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLA 152 (224)
T ss_pred Echh---h-------cccccCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 6311 1 11233456789999999875432 2234455667889999999976554 456999998
Q ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 ----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 ----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.|
T Consensus 153 laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 153 FAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999764 899999999998 588899999999999998765
No 283
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=2.2e-30 Score=293.53 Aligned_cols=191 Identities=21% Similarity=0.359 Sum_probs=158.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|++++|+. +++.+|+|+|+++++||.++|+||||||||||+++|+|+++|++ |+|.+||
T Consensus 313 ~I~~~~v~~~y~~-------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~i~~~g 376 (569)
T PRK10789 313 ELDVNIRQFTYPQ-------------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE---GDIRFHD 376 (569)
T ss_pred cEEEEEEEEECCC-------------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECC
Confidence 5899999999942 22468999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.+ ...+|+.++||+|++.+|+. |++||+.++. +..+ +++++++++..++++.
T Consensus 377 ~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 447 (569)
T PRK10789 377 IPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGR----PDAT----QQEIEHVARLASVHDDILRLPQGYDTEVGE 447 (569)
T ss_pred EEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCC----CCCC----HHHHHHHHHHcCCHHHHHhCcCcccceecC
Confidence 98632 45788999999999999986 9999998752 1112 2345555665555321
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||+|| ||++||+.+++.+.+.|+++. .|+|+|++||+++ ..+.||++++|+
T Consensus 448 ~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~--~~~~~d~i~~l~ 523 (569)
T PRK10789 448 RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLS--ALTEASEILVMQ 523 (569)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchh--HHHcCCEEEEEe
Confidence 23466999999 999999999999999999985 4799999999997 357799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+.+++.+
T Consensus 524 ~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 524 HGHIAQRGNHDQLAQ 538 (569)
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999987753
No 284
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.97 E-value=5.5e-30 Score=256.51 Aligned_cols=190 Identities=24% Similarity=0.367 Sum_probs=151.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC-
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN- 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~- 134 (627)
+|+++||+++|+.+. +.+.++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++
T Consensus 1 ml~~~~l~~~~~~~~--------~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~~ 69 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQ--------QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS---GRILVRH 69 (224)
T ss_pred CEEEEeeEEEeeccc--------CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEEec
Confidence 478999999995311 00012469999999999999999999999999999999999998864 999998
Q ss_pred -Cc--cCCC--hh---hh-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-c----
Q 006897 135 -CH--QIKK--PA---QL-RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-A---- 200 (627)
Q Consensus 135 -g~--~~~~--~~---~~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~---- 200 (627)
|+ ++.. .. +. ++.+||++|++.+++.+||.||+.+..... +..+++..+++.++++.+||.+. .
T Consensus 70 ~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 147 (224)
T TIGR02324 70 EGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER--GVPREAARARARELLARLNIPERLWHLPP 147 (224)
T ss_pred CCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhhCCc
Confidence 42 3211 11 22 357999999999999999999998864321 23344556778999999999652 2
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||+|| ||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||+++.+.
T Consensus 148 ~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 148 ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 3466999998 9999999999999999999975 4899999999987 4778999998763
No 285
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.9e-31 Score=258.40 Aligned_cols=176 Identities=24% Similarity=0.426 Sum_probs=155.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh------hhhcccEEEEccCCCCCCCC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP------AQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~------~~~r~~ig~v~Q~~~l~~~l 161 (627)
=+++|+.+.-.++||-|+||||||||+|+|+|+.+|++ |.|.+||+-+.+. ..-+|+|||||||..+||.+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPde---G~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDE---GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccc---cEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 46788888867999999999999999999999999975 9999999876331 23468899999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC------------------CCCCCCHHH
Q 006897 162 TVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR------------------GISGLDSTS 219 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr------------------PtsgLD~~~ 219 (627)
||+.||.|+... ......+++.+.+|++++.+++ +|||||| |++.||-..
T Consensus 92 tVrgNL~YG~~~--------~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 92 TVRGNLRYGMWK--------SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred EEecchhhhhcc--------cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 999999998531 1345678899999999887655 5999999 999999999
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHH
Q 006897 220 ALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEE 275 (627)
Q Consensus 220 ~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 275 (627)
+.+++-.|.+++++.+.-|+.+||.++ |+.+++|++++|++|++.+.|+.+++..
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999999999999998 7999999999999999999999998754
No 286
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1e-29 Score=260.40 Aligned_cols=207 Identities=25% Similarity=0.395 Sum_probs=179.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD--FDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~--~~~G~i~ 132 (627)
..|+++||++.|... ++...++++|||++++||.+||+|+||||||-..+.++|+++... .-+|+|.
T Consensus 5 ~lL~v~nLsV~f~~~-----------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~ 73 (534)
T COG4172 5 PLLSIRNLSVAFHQE-----------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSIL 73 (534)
T ss_pred cceeeeccEEEEecC-----------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeE
Confidence 479999999999532 356789999999999999999999999999999999999987532 2349999
Q ss_pred ECCccCCC--hhhh---c-ccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc------
Q 006897 133 VNCHQIKK--PAQL---R-KICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------ 198 (627)
Q Consensus 133 i~g~~~~~--~~~~---r-~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------ 198 (627)
++|+++.. ..++ | .+|+++||++ .|.|-.|+.+.+.-..+++ .+.++++.++++.++|+.+|+.+
T Consensus 74 f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H-rg~~~~~Ar~r~lelL~~VgI~~p~~rl~ 152 (534)
T COG4172 74 FDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH-RGLSRAAARARALELLELVGIPEPEKRLD 152 (534)
T ss_pred EcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 99999843 2333 3 3699999997 6788889999998887665 35678889999999999999964
Q ss_pred -ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 199 -VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 199 -~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
..++++|||||| ||++||...+.+|+++|+++.++.|++++++|||+.. +.+++|||+||
T Consensus 153 ~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~VM 231 (534)
T COG4172 153 AYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVM 231 (534)
T ss_pred hCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEEE
Confidence 446777999999 9999999999999999999999999999999999995 88999999999
Q ss_pred cCCeEEeeCCHHHHH
Q 006897 260 SRGSVVHYGSLELLE 274 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~ 274 (627)
.+|++++.|+.+++.
T Consensus 232 ~~G~ivE~~~t~~lF 246 (534)
T COG4172 232 QHGEIVETGTTETLF 246 (534)
T ss_pred eccEEeecCcHHHHh
Confidence 999999999988764
No 287
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=254.73 Aligned_cols=217 Identities=24% Similarity=0.345 Sum_probs=176.9
Q ss_pred eEEEEeEEEEEccCcc--cc----cccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc
Q 006897 56 KVTVRNLSYAIQPNTS--IL----SHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR 129 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~--~~----~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G 129 (627)
++.++||++.|..... .. ..+.+.+.....+++||||+|++|++++++|||||||||+||+|+|++.|++ |
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~---G 79 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---G 79 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCC---C
Confidence 6789999988853211 11 1233444445569999999999999999999999999999999999999975 9
Q ss_pred eEEECCccCCC-hhhhcccEEEEc-cCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----Cc
Q 006897 130 SITVNCHQIKK-PAQLRKICGFVA-QEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SF 203 (627)
Q Consensus 130 ~i~i~g~~~~~-~~~~r~~ig~v~-Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~ 203 (627)
.|.++|.+..+ .+++-+++++|+ |...+.-.+.+.|.+...... ..++.++-.++.+.+.+.++|+...+ ++
T Consensus 80 ~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~I--y~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~L 157 (325)
T COG4586 80 KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLI--YEIPDDEFAERLDFLTEILDLEGFLKWPVRKL 157 (325)
T ss_pred eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHH--HhCCHHHHHHHHHHHHHHhcchhhhhhhhhhc
Confidence 99999987532 344556788776 445666666788887765433 24567788899999999999986554 55
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+-|||.| ||-|||..++..+.+.|++..++.+.||+++||+++ ++.++||||++|++|+++
T Consensus 158 SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv 236 (325)
T COG4586 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLV 236 (325)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEe
Confidence 6899877 999999999999999999999999999999999999 699999999999999999
Q ss_pred eeCCHHHHHHHHH
Q 006897 266 HYGSLELLEETIN 278 (627)
Q Consensus 266 ~~G~~~~~~~~~~ 278 (627)
++|+.+++.+.|.
T Consensus 237 ~dg~l~~l~~~f~ 249 (325)
T COG4586 237 FDGTLAQLQEQFG 249 (325)
T ss_pred ecccHHHHHHHhC
Confidence 9999999987764
No 288
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=2.8e-30 Score=248.26 Aligned_cols=171 Identities=26% Similarity=0.445 Sum_probs=130.5
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+. .++.+++|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 i~~~~l~~~~~~-------------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~ 64 (173)
T cd03246 1 LEVENVSFRYPG-------------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGA 64 (173)
T ss_pred CEEEEEEEEcCC-------------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCE
Confidence 478999999942 12358999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCC
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG 214 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsg 214 (627)
++.+ ...+++.++|++|++.+++. |++||+ + +..+. +++.=+...+. ..+-++- ..||+|
T Consensus 65 ~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l-L---------S~G~~-qrv~la~al~~---~p~~lll---DEPt~~ 126 (173)
T cd03246 65 DISQWDPNELGDHVGYLPQDDELFSG-SIAENI-L---------SGGQR-QRLGLARALYG---NPRILVL---DEPNSH 126 (173)
T ss_pred EcccCCHHHHHhheEEECCCCccccC-cHHHHC-c---------CHHHH-HHHHHHHHHhc---CCCEEEE---ECCccc
Confidence 8632 34567789999999988875 999998 1 11111 11111110000 0000111 129999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 215 LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 215 LD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
||+.++..+.+.|+++++ +|+|||++|||++ .+ +.||++++|++|++
T Consensus 127 LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 127 LDVEGERALNQAIAALKA-AGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999975 5899999999997 35 68999999999974
No 289
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.97 E-value=4.1e-30 Score=292.00 Aligned_cols=194 Identities=23% Similarity=0.395 Sum_probs=155.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++||+++|++ ++++|+|+||++++||.+||+||||||||||+++|+|+++|++ |+|.++|
T Consensus 334 ~i~~~~v~~~y~~--------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g 396 (585)
T TIGR01192 334 AVEFRHITFEFAN--------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTV---GQILIDG 396 (585)
T ss_pred eEEEEEEEEECCC--------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCC---CEEEECC
Confidence 5999999999942 1358999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH-----HHHHHHc--CCcc----ccCC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV-----ESLMDEL--GLTH----VAGS 202 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v-----~~~l~~l--gL~~----~~~~ 202 (627)
.++.+ ...+|+.++||+|++.+++. |++||+.++. +..+.++..+.+ ++.+..+ |++. ....
T Consensus 397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~ 471 (585)
T TIGR01192 397 IDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGR----EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNR 471 (585)
T ss_pred EEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCC----CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCC
Confidence 88643 45688999999999999875 9999998752 112222222211 1222222 3332 2235
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||||| ||++||+.+++.+.+.|+++. .++|+|++||+++. + +.||++++|++|++
T Consensus 472 LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~-~-~~~d~i~~l~~G~i 547 (585)
T TIGR01192 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLST-V-RNADLVLFLDQGRL 547 (585)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHH-H-HcCCEEEEEECCEE
Confidence 67999999 999999999999999999874 47999999999973 4 67999999999999
Q ss_pred EeeCCHHHHHH
Q 006897 265 VHYGSLELLEE 275 (627)
Q Consensus 265 v~~G~~~~~~~ 275 (627)
++.|+.+++.+
T Consensus 548 ~~~g~~~~l~~ 558 (585)
T TIGR01192 548 IEKGSFQELIQ 558 (585)
T ss_pred EEECCHHHHHH
Confidence 99999987754
No 290
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=4.7e-30 Score=286.73 Aligned_cols=194 Identities=20% Similarity=0.367 Sum_probs=161.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++|+++ .+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 256 ~~l~~~~l~~--------------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~---G~I~~~ 312 (501)
T PRK10762 256 VRLKVDNLSG--------------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTS---GYVTLD 312 (501)
T ss_pred cEEEEeCccc--------------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCc---eEEEEC
Confidence 3689999974 16999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--h-hhhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCC---C-CCHHHHHHHHHHHHHHcCCc-cccC--
Q 006897 135 CHQIKK--P-AQLRKICGFVAQED---NLLPLLTVKETLMFSANFRLK---G-MSHKEKEDRVESLMDELGLT-HVAG-- 201 (627)
Q Consensus 135 g~~~~~--~-~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~---~-~~~~~~~~~v~~~l~~lgL~-~~~~-- 201 (627)
|+++.. . ...++.+|||+|++ .+++.+||.||+.++...... + ...++.+++++++++.+||. +..+
T Consensus 313 g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 392 (501)
T PRK10762 313 GHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA 392 (501)
T ss_pred CEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc
Confidence 987632 1 23567799999995 578889999999875311100 1 22334456789999999994 4444
Q ss_pred --CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 --SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 --~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++|||||| ||+|||+.++..+.+.|++++++ |.|||++|||++ ++.++||++++|++
T Consensus 393 ~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~-~~~~~~d~v~~l~~ 470 (501)
T PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMP-EVLGMSDRILVMHE 470 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HHHhhCCEEEEEEC
Confidence 556999999 99999999999999999999764 899999999998 58899999999999
Q ss_pred CeEEeeCCHHHH
Q 006897 262 GSVVHYGSLELL 273 (627)
Q Consensus 262 G~iv~~G~~~~~ 273 (627)
|+++..|+++++
T Consensus 471 G~i~~~~~~~~~ 482 (501)
T PRK10762 471 GRISGEFTREQA 482 (501)
T ss_pred CEEEEEeccccC
Confidence 999999887665
No 291
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.1e-30 Score=322.40 Aligned_cols=190 Identities=21% Similarity=0.283 Sum_probs=161.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ .+++|+|+||+|++||.+||+||||||||||+++|.|+++|++ |+|.+||
T Consensus 1234 ~I~f~nVsf~Y~~~-------------~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~IdG 1297 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG-------------LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK---GRIMIDD 1297 (1495)
T ss_pred cEEEEEEEEEECCC-------------CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---ceEEECC
Confidence 59999999999421 2469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++.+ ..++|++++||||++.+|++ |++|||.++. . ..++++.++++..++.+..
T Consensus 1298 ~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~-----~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e 1367 (1495)
T PLN03232 1298 CDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS-----E----HNDADLWEALERAHIKDVIDRNPFGLDAEVSE 1367 (1495)
T ss_pred EEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC-----C----CCHHHHHHHHHHcCCHHHHHhCcCCCCceecC
Confidence 99743 56789999999999999987 9999997531 1 1234577777777665421
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+.+.|.+.|++.. .++|+|+|+|+++. + ..||||++|+
T Consensus 1368 ~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~t-i-~~~DrIlVL~ 1443 (1495)
T PLN03232 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNT-I-IDCDKILVLS 1443 (1495)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHH-H-HhCCEEEEEE
Confidence 2456899999 999999999999999999874 47999999999973 4 5699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 1444 ~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1444 SGQVLEYDSPQELLS 1458 (1495)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998853
No 292
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=2.7e-30 Score=264.21 Aligned_cols=195 Identities=22% Similarity=0.255 Sum_probs=153.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++|++++|+. ..+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.+ |+|.++
T Consensus 18 ~~i~~~~l~~~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~ 81 (257)
T cd03288 18 GEIKIHDLCVRYEN-------------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD---GKIVID 81 (257)
T ss_pred ceEEEEEEEEEeCC-------------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCC---CeEEEC
Confidence 36999999999942 12359999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHHHc--CCcccc----C
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKE-----DRVESLMDEL--GLTHVA----G 201 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~----~ 201 (627)
|+++.. ...+++.++|++|++.+++. |++||+.... ........ ..+.+.++.+ |++... .
T Consensus 82 g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 155 (257)
T cd03288 82 GIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPEC-----KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGE 155 (257)
T ss_pred CEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCC-----CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCC
Confidence 988632 34567889999999988874 9999985421 01111111 1233344444 444332 3
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++. ++.|||++||+++. +. .|||+++|++|+
T Consensus 156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~-~~-~~dri~~l~~G~ 231 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVST-IL-DADLVLVLSRGI 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChHH-HH-hCCEEEEEECCE
Confidence 567999998 999999999999999999874 37999999999984 55 499999999999
Q ss_pred EEeeCCHHHHHH
Q 006897 264 VVHYGSLELLEE 275 (627)
Q Consensus 264 iv~~G~~~~~~~ 275 (627)
+++.|+++++.+
T Consensus 232 i~~~g~~~~~~~ 243 (257)
T cd03288 232 LVECDTPENLLA 243 (257)
T ss_pred EEEeCCHHHHHh
Confidence 999999887643
No 293
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=8.6e-30 Score=250.69 Aligned_cols=174 Identities=24% Similarity=0.366 Sum_probs=145.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|. ++++|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 1 ml~~~~l~~~~~---------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g 62 (200)
T PRK13540 1 MLDVIELDFDYH---------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK---GEILFER 62 (200)
T ss_pred CEEEEEEEEEeC---------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eeEEECC
Confidence 478999999993 2459999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
+++.. ...+++.++|++|+..+++.+||+||+.+.... .. .+.+++++++.+++.+..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~r 135 (200)
T PRK13540 63 QSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF-----SP--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQ 135 (200)
T ss_pred CccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc-----Cc--chHHHHHHHHHcCCchhhhCChhhcCHHHHHH
Confidence 88642 245677899999999888889999999986421 11 1346889999999876544 456999998
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
||+|||+.++..+.+.|+++++ .|.|||++||++.. .+.||...
T Consensus 136 v~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 136 VALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchh--ccccchhh
Confidence 9999999999999999999865 58999999999873 56687544
No 294
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.97 E-value=4.3e-30 Score=270.47 Aligned_cols=197 Identities=25% Similarity=0.398 Sum_probs=162.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|.++++++. +++.++++|+|+||++.+||.+|||||||||||||.|+|.|..+|.. |.|.+|
T Consensus 333 g~L~Ve~l~~~-------------PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~---G~VRLD 396 (580)
T COG4618 333 GALSVERLTAA-------------PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS---GSVRLD 396 (580)
T ss_pred ceeeEeeeeec-------------CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC---CcEEec
Confidence 46999999983 23456789999999999999999999999999999999999999975 999999
Q ss_pred CccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------ccC----
Q 006897 135 CHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-------VAG---- 201 (627)
Q Consensus 135 g~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~---- 201 (627)
|.++. +++++-++|||+||+-.||+. ||.|||.=. . ++...+++-++.+.-|.++ -.|
T Consensus 397 ga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf-----~---~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG 467 (580)
T COG4618 397 GADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARF-----G---EEADPEKVIEAARLAGVHELILRLPQGYDTRIG 467 (580)
T ss_pred chhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhc-----c---ccCCHHHHHHHHHHcChHHHHHhCcCCccCccC
Confidence 98873 467888999999999999998 999999622 1 1122233333333333322 222
Q ss_pred ----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 202 ----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 202 ----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
.++|||||| |-|+||...+..+.+.|.++++ +|.|+|+++|.|+ +...+|+|++|
T Consensus 468 ~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRPs--~L~~~Dkilvl 544 (580)
T COG4618 468 EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRPS--ALASVDKILVL 544 (580)
T ss_pred CCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCHH--HHhhcceeeee
Confidence 445899999 8899999999999999999965 5899999999997 68899999999
Q ss_pred cCCeEEeeCCHHHHHHHHHh
Q 006897 260 SRGSVVHYGSLELLEETINN 279 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~~~~~ 279 (627)
++|++-.+|+.+|+...+..
T Consensus 545 ~~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 545 QDGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred cCChHHhcCCHHHHHHHhcC
Confidence 99999999999999877653
No 295
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.97 E-value=2.6e-30 Score=259.15 Aligned_cols=186 Identities=25% Similarity=0.400 Sum_probs=149.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|+++.|+.+ +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++
T Consensus 10 ~~l~~~~l~~~~~~~------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~ 74 (226)
T cd03248 10 GIVKFQNVTFAYPTR------------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG---GQVLLD 74 (226)
T ss_pred ceEEEEEEEEEeCCC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---cEEEEC
Confidence 479999999999421 12359999999999999999999999999999999999998864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHH-----HHHHHHHHHHHc--CCcccc----C
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKE-----KEDRVESLMDEL--GLTHVA----G 201 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~----~ 201 (627)
|+++.. ....++.++|++|++.+++ .||+||+.++... . ...+ ....++++++.+ |+++.. .
T Consensus 75 g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~--~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~ 149 (226)
T cd03248 75 GKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQS--C--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGS 149 (226)
T ss_pred CCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCC--C--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCC
Confidence 987532 2345678999999998886 5999999875321 1 1111 112356778888 776543 4
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||+|| ||+|||+.++..+.+.|+++++ ++|+|++||+++ ++. .||++++|++|+
T Consensus 150 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~~g~ 225 (226)
T cd03248 150 QLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLS-TVE-RADQILVLDGGR 225 (226)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHH-HHH-hCCEEEEecCCc
Confidence 567999998 9999999999999999999863 589999999998 464 599999999997
Q ss_pred E
Q 006897 264 V 264 (627)
Q Consensus 264 i 264 (627)
+
T Consensus 226 i 226 (226)
T cd03248 226 I 226 (226)
T ss_pred C
Confidence 4
No 296
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=2e-29 Score=274.15 Aligned_cols=192 Identities=18% Similarity=0.318 Sum_probs=157.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++++||++.|..+ ..+.+|+|+||++++||++||+||||||||||+++|+|+++|+. |+|.++|
T Consensus 21 mL~lknL~~~~~~~------------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s---GeI~I~G 85 (549)
T PRK13545 21 FDKLKDLFFRSKDG------------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK---GTVDIKG 85 (549)
T ss_pred eeEEEEEEEecCCC------------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 68888888887421 22469999999999999999999999999999999999999864 9999998
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
.+. ++.+...+.+.+|++||+.+..... +.+.++..++++++++.+||.+..+ .++|||+||
T Consensus 86 ~~~-----------~i~~~~~l~~~lTV~EnL~l~~~~~--~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRV 152 (549)
T PRK13545 86 SAA-----------LIAISSGLNGQLTGIENIELKGLMM--GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRL 152 (549)
T ss_pred Eee-----------eEEeccccCCCCcHHHHHHhhhhhc--CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHH
Confidence 651 1223345667789999998854322 2344555677889999999976554 456999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++..+++.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|+++++
T Consensus 153 aLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el 230 (549)
T PRK13545 153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEV 230 (549)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999865 5899999999998 58899999999999999999999887
Q ss_pred HHHH
Q 006897 274 EETI 277 (627)
Q Consensus 274 ~~~~ 277 (627)
...+
T Consensus 231 ~~~~ 234 (549)
T PRK13545 231 VDHY 234 (549)
T ss_pred HhhH
Confidence 6543
No 297
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=1.9e-30 Score=317.79 Aligned_cols=197 Identities=20% Similarity=0.342 Sum_probs=162.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----------
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD---------- 125 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~---------- 125 (627)
.|+++||+|+|+.+ .+++||+|+||+|++|+.+||+||||||||||+++|.|++.|..
T Consensus 1165 ~I~f~nVsF~Y~~~------------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~ 1232 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR------------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEH 1232 (1466)
T ss_pred eEEEEEEEEECCCC------------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccc
Confidence 59999999999532 13469999999999999999999999999999999999999820
Q ss_pred -----------------------------------------CccceEEECCccCC--ChhhhcccEEEEccCCCCCCCCC
Q 006897 126 -----------------------------------------FDPRSITVNCHQIK--KPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 126 -----------------------------------------~~~G~i~i~g~~~~--~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
.++|+|.+||.++. +.+.+|++||||+|++.+|+. |
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-T 1311 (1466)
T PTZ00265 1233 TNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-S 1311 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-c
Confidence 13599999999974 357899999999999999975 9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc---------------CCcCCccccC-----------------
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA---------------GSFVGDEENR----------------- 210 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~---------------~~~~gGe~qr----------------- 210 (627)
++|||.++. +.. .+++++++++..++++.. ..++||||||
T Consensus 1312 IreNI~~g~----~~a----t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1312 IYENIKFGK----EDA----TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHHHhcCC----CCC----CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999862 111 234567777776664422 2456899999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC----CeEE-eeCCHHHHHH
Q 006897 211 -GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR----GSVV-HYGSLELLEE 275 (627)
Q Consensus 211 -PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~----G~iv-~~G~~~~~~~ 275 (627)
|||+||+.+++.|.+.|+++.+..++|+|+|+|+++ ..+.||+|++|++ |+++ +.|+++++.+
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999999999999999985334899999999997 3678999999999 9955 8999998753
No 298
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=9.8e-30 Score=249.85 Aligned_cols=174 Identities=24% Similarity=0.364 Sum_probs=143.8
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~ 62 (198)
T TIGR01189 1 LAARNLACSRG---------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGT 62 (198)
T ss_pred CEEEEEEEEEC---------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCE
Confidence 47899999993 3469999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
++.. ....++.++|++|++.+++.+|+.||+.+....+ . .+ ++++.++++.+|+++..+ .++|||+||
T Consensus 63 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~---~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 136 (198)
T TIGR01189 63 ALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIH--G---GA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRL 136 (198)
T ss_pred EcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHc--C---Cc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHH
Confidence 7532 2345678999999988888899999998865332 1 11 346788999999976554 456999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
||+|||+.++..+.+.|+++++ .|.|+|++||++.. -.|++++.
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 137 ALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEccccc---ccceEEee
Confidence 9999999999999999999865 48899999999862 34566654
No 299
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.1e-29 Score=237.72 Aligned_cols=200 Identities=23% Similarity=0.391 Sum_probs=171.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+++| +..++|+|+||++.+||+-+|||||||||||++.+|+|..+|+. |++.++
T Consensus 4 ~iL~~~~vsVsF---------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~---G~v~f~ 65 (249)
T COG4674 4 IILYLDGVSVSF---------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFD 65 (249)
T ss_pred ceEEEeceEEEE---------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc---ceEEEc
Confidence 369999999999 35679999999999999999999999999999999999999864 999999
Q ss_pred C-ccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHHHcCCccccCC--
Q 006897 135 C-HQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK------GMSHKEKEDRVESLMDELGLTHVAGS-- 202 (627)
Q Consensus 135 g-~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~------~~~~~~~~~~v~~~l~~lgL~~~~~~-- 202 (627)
| .++.. ..-.|..||--||.|..|+.+||+|||.++...... .....+.+++++++|...||.+.++.
T Consensus 66 g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A 145 (249)
T COG4674 66 GDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA 145 (249)
T ss_pred CchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh
Confidence 9 77643 233466799999999999999999999997532111 01234556789999999999877654
Q ss_pred --cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 203 --FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 203 --~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
++.||||+ |++|+--....+.-++|+.++. +.+|+++.||+.. +.+++|+|.+|++|
T Consensus 146 ~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~F-vr~~A~~VTVlh~G 222 (249)
T COG4674 146 ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGF-VREIADKVTVLHEG 222 (249)
T ss_pred hhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHH-HHHhhheeEEEecc
Confidence 55899988 9999999999999999999984 5799999999996 89999999999999
Q ss_pred eEEeeCCHHHHHH
Q 006897 263 SVVHYGSLELLEE 275 (627)
Q Consensus 263 ~iv~~G~~~~~~~ 275 (627)
.+...|+.+++..
T Consensus 223 ~VL~EGsld~v~~ 235 (249)
T COG4674 223 SVLAEGSLDEVQN 235 (249)
T ss_pred ceeecccHHHhhc
Confidence 9999999988753
No 300
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=6.7e-30 Score=315.74 Aligned_cols=190 Identities=23% Similarity=0.308 Sum_probs=161.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||
T Consensus 1237 ~I~f~nVsf~Y~~~-------------~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~---G~I~IDG 1300 (1622)
T PLN03130 1237 SIKFEDVVLRYRPE-------------LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER---GRILIDG 1300 (1622)
T ss_pred cEEEEEEEEEeCCC-------------CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECC
Confidence 59999999999422 2359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++.+ ..++|+++++|||++.+|++ |++|||.++. +..++++.++++..++.+..
T Consensus 1301 ~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~---------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1301 CDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN---------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred EecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC---------CCCHHHHHHHHHHcCcHHHHHhCccccCccccC
Confidence 99753 57899999999999999987 9999997641 11245577777777765322
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+.+.|.+.|++.. .++|+|+|+|+++. + ..||||++|+
T Consensus 1371 ~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~t-I-~~~DrIlVLd 1446 (1622)
T PLN03130 1371 AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT-I-IDCDRILVLD 1446 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHH-H-HhCCEEEEEE
Confidence 2456899998 899999999999999999874 47999999999984 4 5699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 1447 ~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1447 AGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999998864
No 301
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6e-30 Score=285.87 Aligned_cols=195 Identities=15% Similarity=0.328 Sum_probs=160.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++|+++. .+++|+||+|++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 256 ~~l~~~~~~~~-------------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~---G~i~~~ 313 (501)
T PRK11288 256 VRLRLDGLKGP-------------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA---GQVYLD 313 (501)
T ss_pred cEEEEeccccC-------------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC---ceEEEC
Confidence 36899999731 38999999999999999999999999999999999998864 999999
Q ss_pred CccCCC---hhhhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCC--C--CCHHHHHHHHHHHHHHcCCc-cccC--
Q 006897 135 CHQIKK---PAQLRKICGFVAQED---NLLPLLTVKETLMFSANFRLK--G--MSHKEKEDRVESLMDELGLT-HVAG-- 201 (627)
Q Consensus 135 g~~~~~---~~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~--~--~~~~~~~~~v~~~l~~lgL~-~~~~-- 201 (627)
|+++.. ....++.++|++|++ .+++.+|+.||+.++...... + ....+.+++++++++.+|+. +..+
T Consensus 314 g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 393 (501)
T PRK11288 314 GKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL 393 (501)
T ss_pred CEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc
Confidence 987532 123467899999986 488889999999875321110 1 12233446789999999994 4444
Q ss_pred --CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 --SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 --~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++|||||| ||+|||+.++.+++++|+++++ .|.|||++|||++ ++.++||++++|++
T Consensus 394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~-~~~~~~d~i~~l~~ 471 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLP-EVLGVADRIVVMRE 471 (501)
T ss_pred cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHhhCCEEEEEEC
Confidence 566999999 9999999999999999999976 4899999999998 58999999999999
Q ss_pred CeEEeeCCHHHH
Q 006897 262 GSVVHYGSLELL 273 (627)
Q Consensus 262 G~iv~~G~~~~~ 273 (627)
|++++.|+++++
T Consensus 472 g~i~~~~~~~~~ 483 (501)
T PRK11288 472 GRIAGELAREQA 483 (501)
T ss_pred CEEEEEEccccC
Confidence 999999987654
No 302
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.96 E-value=9.2e-30 Score=245.84 Aligned_cols=159 Identities=27% Similarity=0.507 Sum_probs=132.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|..+ .+.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. |+|.++|+
T Consensus 1 i~~~~~~~~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~ 64 (178)
T cd03247 1 LSINNVSFSYPEQ-------------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDGV 64 (178)
T ss_pred CEEEEEEEEeCCC-------------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCE
Confidence 4789999999421 1358999999999999999999999999999999999998864 99999998
Q ss_pred cCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC-----
Q 006897 137 QIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR----- 210 (627)
Q Consensus 137 ~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr----- 210 (627)
++.. ...+++.++|++|++.+++ .|++||+ ...++|||+||
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i--------------------------------~~~LS~G~~qrv~lar 111 (178)
T cd03247 65 PVSDLEKALSSLISVLNQRPYLFD-TTLRNNL--------------------------------GRRFSGGERQRLALAR 111 (178)
T ss_pred EHHHHHHHHHhhEEEEccCCeeec-ccHHHhh--------------------------------cccCCHHHHHHHHHHH
Confidence 7522 2345778999999998886 6999998 12233344433
Q ss_pred -------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 -------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 -------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+++.|+++. ++.|||++||+++. + +.||++++|++|++++.|
T Consensus 112 al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 112 ILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999999999984 37899999999984 5 579999999999998764
No 303
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.2e-30 Score=269.56 Aligned_cols=191 Identities=26% Similarity=0.411 Sum_probs=157.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++||++.|++ ++++|+||||++.||+.+||+||||+||||++|+|..+...+ +|.|.+|
T Consensus 536 G~i~fsnvtF~Y~p--------------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iD 598 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDP--------------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITID 598 (790)
T ss_pred CeEEEEEeEEecCC--------------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEc
Confidence 36999999999963 457999999999999999999999999999999999887654 4999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC-------ccc------
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL-------THV------ 199 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~------ 199 (627)
|+|+.. ...+|+.||.||||..+|.+ |+..||.|+. +..+.+| +.++.+..++ .+-
T Consensus 599 gqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~~Asnee----vyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 599 GQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK----PSASNEE----VYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred CchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC----CCCChHH----HHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 999753 46799999999999999976 9999999872 1222333 3333333333 221
Q ss_pred --cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 200 --AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 200 --~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
.-+++|||||| .||+||..+.+.|-..|.++++ ++|-|++.|+++. .-.+|.|+++
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLST--ivnAD~ILvi 745 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLST--IVNADLILVI 745 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehh--eecccEEEEE
Confidence 22456999999 6899999999999999999984 7899999999984 4569999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
++|+|++.|..+|+..
T Consensus 746 ~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 746 SNGRIVERGRHEELLK 761 (790)
T ss_pred eCCeEeecCcHHHHHh
Confidence 9999999999998864
No 304
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.96 E-value=6.9e-30 Score=315.71 Aligned_cols=190 Identities=17% Similarity=0.223 Sum_probs=160.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ ...+|+||||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||
T Consensus 1284 ~I~f~nVsf~Y~~~-------------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~---G~I~IdG 1347 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-------------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE---GEIIIDG 1347 (1522)
T ss_pred cEEEEEEEEEeCCC-------------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC---CeEEECC
Confidence 59999999999532 2359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.|+.+ ...+|+++++|||++.+|++ |++|||.... ..+ ++++.++++..++.+..
T Consensus 1348 ~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~-----~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1348 LNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS-----QYS----DEEVWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred EEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc-----CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecC
Confidence 99853 56899999999999999987 9999996311 112 34567777777664321
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+...|.+.|++.. .++|+|+|+|+++. ...||||++|+
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~t--i~~~DrIlVld 1493 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNT--IMDYTRVIVLD 1493 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH--HHhCCEEEEEE
Confidence 2355899998 999999999999999999864 47999999999973 56699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 1494 ~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1494 KGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998864
No 305
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.96 E-value=2.2e-29 Score=265.57 Aligned_cols=167 Identities=24% Similarity=0.382 Sum_probs=144.9
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHH
Q 006897 102 VVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHK 181 (627)
Q Consensus 102 IiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~ 181 (627)
|+||||||||||+|+|+|+++|++ |+|.++|+++......++.+||++|++.+++.+||+||+.|+...+ +.+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~---G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDS---GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR--KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc--CCCHH
Confidence 689999999999999999999864 9999999886432334678999999999999999999999986432 23445
Q ss_pred HHHHHHHHHHHHcCCccccCC----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Q 006897 182 EKEDRVESLMDELGLTHVAGS----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVV 239 (627)
Q Consensus 182 ~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii 239 (627)
+.+++++++++.+||++..++ ++|||+|| ||+|||+.++..+.+.|++++++.|+|+|
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 155 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 566789999999999876554 56999999 99999999999999999999876789999
Q ss_pred EEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 240 LSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 240 ~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
++|||++ ++.++|||+++|++|+++..|+++++.
T Consensus 156 ivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 156 FVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999998 588999999999999999999998874
No 306
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.96 E-value=3.1e-29 Score=283.05 Aligned_cols=180 Identities=17% Similarity=0.299 Sum_probs=152.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ ++++|+|+||++++||.+||+||||||||||+++|+|+++|++ |+|.+||
T Consensus 322 ~i~~~~v~f~y~~--------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g 384 (547)
T PRK10522 322 TLELRNVTFAYQD--------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDG 384 (547)
T ss_pred eEEEEEEEEEeCC--------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECC
Confidence 5999999999942 2358999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc---------CCcC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA---------GSFV 204 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~---------~~~~ 204 (627)
+++.+ ...+|++++||+|++.+|+. |++|| + . ...+++++++++.+++++.. ..++
T Consensus 385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~---~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LS 451 (547)
T PRK10522 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G---K------PANPALVEKWLERLKMAHKLELEDGRISNLKLS 451 (547)
T ss_pred EECCCCCHHHHhhheEEEecChhHHHH-hhccc---c---C------chHHHHHHHHHHHcCCchhhhccccCCCCCCCC
Confidence 98743 45788999999999999875 88887 1 0 12345678888888886532 3677
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|||+|| ||++||+.+++.+.+.|.+..++.|+|+|++||+++ ..+.||++++|++|++++
T Consensus 452 gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 452 KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSE 529 (547)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEE
Confidence 999999 999999999999999998765445899999999986 467899999999999987
Q ss_pred e
Q 006897 267 Y 267 (627)
Q Consensus 267 ~ 267 (627)
.
T Consensus 530 ~ 530 (547)
T PRK10522 530 L 530 (547)
T ss_pred e
Confidence 6
No 307
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.3e-29 Score=292.63 Aligned_cols=192 Identities=27% Similarity=0.389 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|.|+.+ .+.+||+|+|+++++|+.+||||||||||||.+.+|-..+.|+. |.|.+||
T Consensus 987 ~I~~~~V~F~YPsR------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~---G~V~IDg 1051 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA---GKVKIDG 1051 (1228)
T ss_pred EEEEeeeEeeCCCC------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECC
Confidence 59999999999744 35679999999999999999999999999999999999998864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------ccC-----
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-------VAG----- 201 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~----- 201 (627)
+++.+ .+.+|+++|.|.|+|.||.. |++|||.|+. . ..+ ++++.++++..+..+ -.|
T Consensus 1052 ~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~---~-~vs----~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe 1122 (1228)
T KOG0055|consen 1052 VDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS---E-EVS----EEEIIEAAKLANAHNFISSLPQGYDTRVGE 1122 (1228)
T ss_pred cccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC---C-CCC----HHHHHHHHHHhhhHHHHhcCcCcccCccCc
Confidence 99854 57899999999999999976 9999999982 1 123 344555665554432 222
Q ss_pred ---CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 202 ---SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 202 ---~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
+++|||||| .||+||+++.+.+-+.|.+.. .|+|.|+|.|+++ ..+.||.|+|++
T Consensus 1123 rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS--TIqnaD~I~Vi~ 1198 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS--TIQNADVIAVLK 1198 (1228)
T ss_pred ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh--hhhcCCEEEEEE
Confidence 445999999 689999999999999999985 4899999999998 368899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|+|++.|+++++..
T Consensus 1199 ~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1199 NGKVVEQGTHDELLA 1213 (1228)
T ss_pred CCEEEecccHHHHHh
Confidence 999999999999876
No 308
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=3.1e-29 Score=280.51 Aligned_cols=195 Identities=18% Similarity=0.265 Sum_probs=158.6
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++|+++ .+|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 266 ~~~l~~~~l~~--------------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~ 322 (510)
T PRK15439 266 APVLTVEDLTG--------------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIML 322 (510)
T ss_pred CceEEEeCCCC--------------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEE
Confidence 34799999983 15999999999999999999999999999999999998864 99999
Q ss_pred CCccCCC--hh-hhcccEEEEccCC---CCCCCCCHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCc-cccC----
Q 006897 134 NCHQIKK--PA-QLRKICGFVAQED---NLLPLLTVKETLMFSANFRLK-GMSHKEKEDRVESLMDELGLT-HVAG---- 201 (627)
Q Consensus 134 ~g~~~~~--~~-~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~-~~~~---- 201 (627)
+|+++.. .. ..++.++|+||++ .+++.+|+.||+......... .....+.+++++++++.+||+ +..+
T Consensus 323 ~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 402 (510)
T PRK15439 323 NGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR 402 (510)
T ss_pred CCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc
Confidence 9987632 11 2456799999984 478889999999643110000 011233446788999999996 4444
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.++|||||| ||+|||+.++..+.+.|+++++ .|.|||++|||++ ++.++|||+++|++|+
T Consensus 403 ~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~~-~i~~~~d~i~~l~~G~ 480 (510)
T PRK15439 403 TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLE-EIEQMADRVLVMHQGE 480 (510)
T ss_pred cCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCE
Confidence 466999999 9999999999999999999986 4899999999998 5889999999999999
Q ss_pred EEeeCCHHHH
Q 006897 264 VVHYGSLELL 273 (627)
Q Consensus 264 iv~~G~~~~~ 273 (627)
++..|+++++
T Consensus 481 i~~~~~~~~~ 490 (510)
T PRK15439 481 ISGALTGAAI 490 (510)
T ss_pred EEEEEccccC
Confidence 9998877654
No 309
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=5.7e-29 Score=247.27 Aligned_cols=174 Identities=25% Similarity=0.372 Sum_probs=148.8
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+++++||++.|..+... .......+++||||+|++||+++|+|+||||||||-|+|.|+++|++ |+|.++
T Consensus 3 ~ll~v~~l~k~f~~~~~~------~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~---G~i~f~ 73 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGF------GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS---GEILFE 73 (268)
T ss_pred ceEEEeccEEEEeccccc------CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC---ceEEEc
Confidence 379999999999643210 01113579999999999999999999999999999999999999975 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCCcccc
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVGDEEN 209 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~gGe~q 209 (627)
|+++.... +++..+++.++|+.+||.. ..+.++|||+|
T Consensus 74 g~~i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 74 GKDITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred Ccchhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 98853211 2456788999999999864 34566799999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| |+|.||...+.+++++|+++.++.|.|.+++|||++. +..+|||+.+|..|+|++.|+.+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~G~iVE~g~~~ 195 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKIVEIGPTE 195 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEecCceeEecCHH
Confidence 9 9999999999999999999999999999999999995 88899999999999999999998
Q ss_pred HHHH
Q 006897 272 LLEE 275 (627)
Q Consensus 272 ~~~~ 275 (627)
++..
T Consensus 196 ~~~~ 199 (268)
T COG4608 196 EVFS 199 (268)
T ss_pred HHhh
Confidence 8753
No 310
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.6e-29 Score=279.32 Aligned_cols=187 Identities=16% Similarity=0.269 Sum_probs=154.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|+. |+|.++|
T Consensus 1 ml~i~~ls~~~~---------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~ 62 (530)
T PRK15064 1 MLSTANITMQFG---------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSA---GNVSLDP 62 (530)
T ss_pred CEEEEEEEEEeC---------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecC
Confidence 489999999993 2469999999999999999999999999999999999999864 9999986
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHH-hc-----------CCC------------------CCHHHHHH
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSAN-FR-----------LKG------------------MSHKEKED 185 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~-~~-----------~~~------------------~~~~~~~~ 185 (627)
. +.+||++|++.+++.+||+||+.++.. .. ... ....+.++
T Consensus 63 ~---------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (530)
T PRK15064 63 N---------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEA 133 (530)
T ss_pred C---------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHH
Confidence 3 348999999988899999999987531 00 000 00012346
Q ss_pred HHHHHHHHcCCccc-----cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEc
Q 006897 186 RVESLMDELGLTHV-----AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSI 242 (627)
Q Consensus 186 ~v~~~l~~lgL~~~-----~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~t 242 (627)
++.++++.+||.+. ..+++|||+|| ||+|||+.++..+.+.|++ .|.|||++|
T Consensus 134 ~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivs 209 (530)
T PRK15064 134 RAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIIS 209 (530)
T ss_pred HHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEe
Confidence 78899999999642 35577999999 9999999999999999863 478999999
Q ss_pred cCccHHHHHHhhhheeecCCeE-EeeCCHHHHH
Q 006897 243 HQPSYRILQYISKFLILSRGSV-VHYGSLELLE 274 (627)
Q Consensus 243 H~~~~~i~~~~D~i~vL~~G~i-v~~G~~~~~~ 274 (627)
||++ .+.++||++++|++|++ ++.|++++..
T Consensus 210 Hd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 210 HDRH-FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred CCHH-HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 9998 48899999999999999 4789887654
No 311
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.96 E-value=2.8e-29 Score=282.60 Aligned_cols=175 Identities=27% Similarity=0.419 Sum_probs=146.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ ++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 320 ~i~~~~v~f~y~~~-------------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~I~~~g 383 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-------------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE---GSIAVNG 383 (529)
T ss_pred eEEEEEEEEECCCC-------------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 59999999999521 2468999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
.++.+ .+++|+++|||+|++.+|+. |++||+.++. +..+ +++++++++..++++.
T Consensus 384 ~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e 454 (529)
T TIGR02857 384 VPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLAR----PDAS----DAEIRRALERAGLDEFVAALPQGLDTLIGE 454 (529)
T ss_pred EehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccC----CCCC----HHHHHHHHHHcCcHHHHHhCcccccchhcc
Confidence 98743 46789999999999999975 9999998752 1112 3456677777766532
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
...++|||||| |||+||+.+++.+.+.|+++. .++|+|++||+++ ..+.||+|++|
T Consensus 455 ~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 23456999999 999999999999999999985 4799999999997 35789999876
No 312
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.96 E-value=2.1e-29 Score=243.82 Aligned_cols=156 Identities=29% Similarity=0.544 Sum_probs=129.9
Q ss_pred EEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+++|++++|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|++
T Consensus 1 ~~~~l~~~~~---------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~---G~v~~~g~~ 62 (180)
T cd03214 1 EVENLSVGYG---------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKD 62 (180)
T ss_pred CeeEEEEEEC---------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEE
Confidence 4789999993 2359999999999999999999999999999999999998864 999999988
Q ss_pred CCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc----ccCCcCCccccC-
Q 006897 138 IKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH----VAGSFVGDEENR- 210 (627)
Q Consensus 138 ~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~gGe~qr- 210 (627)
+.. ...+++.++|++| +++.+|+++ ....++|||+||
T Consensus 63 ~~~~~~~~~~~~i~~~~q------------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl 106 (180)
T cd03214 63 LASLSPKELARKIAYVPQ------------------------------------ALELLGLAHLADRPFNELSGGERQRV 106 (180)
T ss_pred CCcCCHHHHHHHHhHHHH------------------------------------HHHHcCCHhHhcCCcccCCHHHHHHH
Confidence 632 3345667899998 233333332 234567899988
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+|||+.++..+.+.|++++++.|.|+|++||+++ ++.++||++++|++|++++.|
T Consensus 107 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999997644789999999998 478999999999999998654
No 313
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=7.9e-29 Score=279.89 Aligned_cols=188 Identities=24% Similarity=0.295 Sum_probs=153.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
++|+++||+++|+. ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|.++
T Consensus 5 ~~l~i~~l~~~y~~--------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~---G~i~~~ 67 (556)
T PRK11819 5 YIYTMNRVSKVVPP--------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARPA 67 (556)
T ss_pred EEEEEeeEEEEeCC--------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEec
Confidence 47999999999931 2469999999999999999999999999999999999999864 999986
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHH-hc-----C------CCCCH----------------------
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSAN-FR-----L------KGMSH---------------------- 180 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~-~~-----~------~~~~~---------------------- 180 (627)
+. ..+|||+|++.+++.+||.||+.++.. .+ . .....
T Consensus 68 ~~---------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (556)
T PRK11819 68 PG---------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADA 138 (556)
T ss_pred CC---------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 41 359999999999999999999987531 00 0 00000
Q ss_pred HHHHHHHHHHHHHcCCcc---ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Q 006897 181 KEKEDRVESLMDELGLTH---VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVV 239 (627)
Q Consensus 181 ~~~~~~v~~~l~~lgL~~---~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii 239 (627)
.+.+++++++++.+||.. ....++|||+|| ||++||+.++..+.+.|+++ +.|||
T Consensus 139 ~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tvi 214 (556)
T PRK11819 139 WDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVV 214 (556)
T ss_pred cchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEE
Confidence 012457888999999853 234567999999 99999999999999999876 24999
Q ss_pred EEccCccHHHHHHhhhheeecCCeEE-eeCCHHHH
Q 006897 240 LSIHQPSYRILQYISKFLILSRGSVV-HYGSLELL 273 (627)
Q Consensus 240 ~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 273 (627)
++|||++ .+.++||++++|++|+++ +.|+.++.
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 9999998 488999999999999986 78887754
No 314
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.7e-29 Score=240.01 Aligned_cols=169 Identities=27% Similarity=0.456 Sum_probs=128.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|..+ ...+++|+||++++||+++|+||||||||||+++|+|+++|.+ |+|.++|+
T Consensus 1 l~~~~l~~~~~~~-------------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~---G~i~~~g~ 64 (171)
T cd03228 1 IEFKNVSFSYPGR-------------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGV 64 (171)
T ss_pred CEEEEEEEEcCCC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCE
Confidence 4789999999421 1258999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCC
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISG 214 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsg 214 (627)
++.. ...+++.++|++|++.+++ .|+.||+ + +..+ ++++. +...+-.+ .+-++-.| ||+|
T Consensus 65 ~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l-L---------S~G~-~~rl~-la~al~~~--p~llllDE---P~~g 126 (171)
T cd03228 65 DLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI-L---------SGGQ-RQRIA-IARALLRD--PPILILDE---ATSA 126 (171)
T ss_pred EhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-h---------CHHH-HHHHH-HHHHHhcC--CCEEEEEC---CCcC
Confidence 7532 2355678999999998887 5999998 1 1111 11221 11111111 01111122 9999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 215 LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 215 LD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
||+.++.++.+.|+++. + ++|||++||+++ ++.. ||++++|++|+
T Consensus 127 LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 127 LDPETEALILEALRALA-K-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999985 3 689999999998 4665 99999999985
No 315
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=3.1e-29 Score=309.43 Aligned_cols=190 Identities=21% Similarity=0.268 Sum_probs=162.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ ...+|+||||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||
T Consensus 1308 ~I~f~nVsf~Y~~~-------------~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~---G~I~IDG 1371 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG-------------LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG---GEIRVNG 1371 (1560)
T ss_pred eEEEEEEEEEeCCC-------------CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 59999999999532 2359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++.+ .+++|+.||||||++.+|+. ||+|||.... +..++++.++++.+|+++..
T Consensus 1372 ~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~---------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge 1441 (1560)
T PTZ00243 1372 REIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL---------EASSAEVWAALELVGLRERVASESEGIDSRVLE 1441 (1560)
T ss_pred EEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc---------CCCHHHHHHHHHHCCChHHHhhCcccccccccC
Confidence 99743 56899999999999999987 9999996421 11245688888888876432
Q ss_pred --CCcCCccccC-------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 201 --GSFVGDEENR-------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 201 --~~~~gGe~qr-------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
..++|||||| |||+||+.+.+.|.+.|++.. .++|+|+|+|+++ ....||+|++|
T Consensus 1442 ~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~--ti~~~DrIlVL 1517 (1560)
T PTZ00243 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLH--TVAQYDKIIVM 1517 (1560)
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHH--HHHhCCEEEEE
Confidence 2456899998 899999999999999999864 4799999999997 45779999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
++|++++.|+++++.+
T Consensus 1518 d~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1518 DHGAVAEMGSPRELVM 1533 (1560)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999998854
No 316
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.9e-28 Score=238.89 Aligned_cols=206 Identities=22% Similarity=0.293 Sum_probs=167.2
Q ss_pred eEEEEeEEEEEccCcccc--------ccc-ccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 006897 56 KVTVRNLSYAIQPNTSIL--------SHL-LHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF 126 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~--------~~~-~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~ 126 (627)
.|+++||++.|....... ..+ .........+|+||||++++||.+||||+||||||||||+|+|.++|+.
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~- 81 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS- 81 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-
Confidence 689999999996432100 011 1113455679999999999999999999999999999999999999975
Q ss_pred ccceEEECCccCCChhhhcccEEEEcc-CCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC-
Q 006897 127 DPRSITVNCHQIKKPAQLRKICGFVAQ-EDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV- 204 (627)
Q Consensus 127 ~~G~i~i~g~~~~~~~~~r~~ig~v~Q-~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~- 204 (627)
|+|.++|+- +.+.. ...+-|.+|.+||+.+...+ .++++++.+++++++++.-+|.+..+.++
T Consensus 82 --G~v~v~G~v-----------~~li~lg~Gf~pelTGreNi~l~~~~--~G~~~~ei~~~~~eIieFaELG~fi~~Pvk 146 (249)
T COG1134 82 --GKVKVTGKV-----------APLIELGAGFDPELTGRENIYLRGLI--LGLTRKEIDEKVDEIIEFAELGDFIDQPVK 146 (249)
T ss_pred --ceEEEcceE-----------ehhhhcccCCCcccchHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999864 11111 12456789999999997643 46788999999999999999988877654
Q ss_pred ---CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 205 ---GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 205 ---gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
.|++-| -++-.|+.=+++-.+.++++.++ ++|||++|||++. +.++|||+++|++|+
T Consensus 147 tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd~~~-I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 147 TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDLGA-IKQYCDRAIWLEHGQ 224 (249)
T ss_pred hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHH-HHHhcCeeEEEeCCE
Confidence 677666 35778999999999999999654 6999999999995 999999999999999
Q ss_pred EEeeCCHHHHHHHHHh
Q 006897 264 VVHYGSLELLEETINN 279 (627)
Q Consensus 264 iv~~G~~~~~~~~~~~ 279 (627)
+...|+++++.+.+..
T Consensus 225 i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 225 IRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEcCCHHHHHHHHHH
Confidence 9999999999877654
No 317
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.96 E-value=5.9e-29 Score=248.91 Aligned_cols=174 Identities=22% Similarity=0.387 Sum_probs=143.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCC--CCCCHHHHHHH
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLL--PLLTVKETLMF 169 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~--~~lTV~e~l~~ 169 (627)
|++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++ ...++.++|++|++.++ ..+|+.||+.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~---~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 74 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASP---GKGWRHIGYVPQRHEFAWDFPISVAHTVMS 74 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCccc---hHhhCcEEEecccccccCCCCccHHHHHHh
Confidence 5789999999999999999999999999998864 9999999874 23467899999998763 34799999987
Q ss_pred HHHhcCC--CCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CCCCCCHHHHHHHHH
Q 006897 170 SANFRLK--GMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GISGLDSTSALQVIE 225 (627)
Q Consensus 170 ~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------PtsgLD~~~~~~i~~ 225 (627)
+...... ....++.++++.++++.+|+++..+ .++|||+|| ||+|||+.++..+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 75 GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred ccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 5321100 0122334567899999999976554 456999998 999999999999999
Q ss_pred HHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 226 LLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 226 ~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
.|+++++ .|+|+|++||+++ ++.++||+++++ +|++++.|+++++.
T Consensus 155 ~l~~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 155 LFIELAG-AGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999975 4899999999998 588999999999 79999999987763
No 318
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=6.6e-29 Score=276.89 Aligned_cols=197 Identities=17% Similarity=0.264 Sum_probs=153.4
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.++. ..|+|.+
T Consensus 258 ~~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~ 320 (490)
T PRK10938 258 EPRIVLNNGVVSYN---------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTL 320 (490)
T ss_pred CceEEEeceEEEEC---------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEE
Confidence 35799999999993 235999999999999999999999999999999999987641 1399999
Q ss_pred CCccCCC---hhhhcccEEEEccCCCCCC--CCCHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHcCCcc-ccC----
Q 006897 134 NCHQIKK---PAQLRKICGFVAQEDNLLP--LLTVKETLMFSANF--RLKGMSHKEKEDRVESLMDELGLTH-VAG---- 201 (627)
Q Consensus 134 ~g~~~~~---~~~~r~~ig~v~Q~~~l~~--~lTV~e~l~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~-~~~---- 201 (627)
+|+++.. ....++.+||++|++.++. ..++.+++.++... .......++.+++++++++.+||.+ ..+
T Consensus 321 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 400 (490)
T PRK10938 321 FGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFH 400 (490)
T ss_pred ecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchh
Confidence 9986422 1235678999999876543 34777776543210 0111112334567899999999986 554
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHH-HhhhheeecCC
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ-YISKFLILSRG 262 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~-~~D~i~vL~~G 262 (627)
.++|||+|| ||+|||+.++..+.+.|++++++.+.|||++|||++ ++.+ +||++++|++|
T Consensus 401 ~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDG 479 (490)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCC
Confidence 456999999 999999999999999999998753457999999998 4766 59999999999
Q ss_pred eEEeeC
Q 006897 263 SVVHYG 268 (627)
Q Consensus 263 ~iv~~G 268 (627)
++++.-
T Consensus 480 ~i~~~~ 485 (490)
T PRK10938 480 DIYRYV 485 (490)
T ss_pred ceEEee
Confidence 988753
No 319
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.96 E-value=9.3e-29 Score=241.31 Aligned_cols=156 Identities=28% Similarity=0.466 Sum_probs=130.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC----hhhhcccEEEEccCCC--C
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK----PAQLRKICGFVAQEDN--L 157 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~----~~~~r~~ig~v~Q~~~--l 157 (627)
+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.. ...+++.++|++|++. +
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS---GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 469999999999999999999999999999999999998864 999999988631 1245678999999973 4
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC------------------CCCCC
Q 006897 158 LPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR------------------GISGL 215 (627)
Q Consensus 158 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr------------------PtsgL 215 (627)
+ ..||+||+.+..... +.+.++.+++++++++.+||++..++ ++|||+|| ||+||
T Consensus 82 ~-~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 158 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNL--GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158 (190)
T ss_pred c-cccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 5 469999999865322 23445556778999999999765544 45999998 99999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 216 DSTSALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 216 D~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
|+.++..+.+.|+++++ +|+|||++||+++
T Consensus 159 D~~~~~~~~~~l~~~~~-~~~tili~sH~~~ 188 (190)
T TIGR01166 159 DPAGREQMLAILRRLRA-EGMTVVISTHDVD 188 (190)
T ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEeeccc
Confidence 99999999999999976 4899999999986
No 320
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.96 E-value=4.5e-29 Score=280.89 Aligned_cols=162 Identities=25% Similarity=0.432 Sum_probs=136.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|+|++ ++++|+|+||++++||.+||+||||||||||+|+|+|+++|++ |+|.+||
T Consensus 334 ~I~~~~vsf~Y~~--------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~i~g 396 (529)
T TIGR02868 334 TLELRDLSFGYPG--------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ---GEVTLDG 396 (529)
T ss_pred eEEEEEEEEecCC--------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 5999999999942 1349999999999999999999999999999999999999964 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc--------------
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA-------------- 200 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------------- 200 (627)
.++.+ .+++|+++|||||++.+|+. |++|||.++. + +..+++++++++..++++..
T Consensus 397 ~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 467 (529)
T TIGR02868 397 VSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----P----DATDEELWAALERVGLADWLRSLPDGLDTVLGEG 467 (529)
T ss_pred EEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccC----C----CCCHHHHHHHHHHcCCHHHHHhCcccccchhccc
Confidence 88633 56788999999999999987 9999999862 1 12345577788887775432
Q ss_pred -CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCc
Q 006897 201 -GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245 (627)
Q Consensus 201 -~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~ 245 (627)
..++|||||| |||+||+.+++.+.+.|+++. .++|+|++||++
T Consensus 468 G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 468 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 2356999999 999999999999999999874 479999999985
No 321
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=1.2e-28 Score=234.65 Aligned_cols=159 Identities=22% Similarity=0.354 Sum_probs=121.4
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~ 62 (163)
T cd03216 1 LELRGITKRFG---------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGK 62 (163)
T ss_pred CEEEEEEEEEC---------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCE
Confidence 47899999993 2359999999999999999999999999999999999999864 99999998
Q ss_pred cCCC--h-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCC
Q 006897 137 QIKK--P-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGIS 213 (627)
Q Consensus 137 ~~~~--~-~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPts 213 (627)
++.. . ...++.++|++| +| ..+. +++.=+...+. + .+-++-. .||+
T Consensus 63 ~~~~~~~~~~~~~~i~~~~q-------LS-----------------~G~~-qrl~laral~~-~--p~illlD---EP~~ 111 (163)
T cd03216 63 EVSFASPRDARRAGIAMVYQ-------LS-----------------VGER-QMVEIARALAR-N--ARLLILD---EPTA 111 (163)
T ss_pred ECCcCCHHHHHhcCeEEEEe-------cC-----------------HHHH-HHHHHHHHHhc-C--CCEEEEE---CCCc
Confidence 8643 2 235678999999 11 1111 11111111110 0 0001111 2999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 214 GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 214 gLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|||+.+++.+.+.|+++++ +|.|+|++|||++ ++.+.||++++|++|++++
T Consensus 112 ~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 112 ALTPAEVERLFKVIRRLRA-QGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999975 4899999999998 4788999999999999875
No 322
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=7e-29 Score=244.92 Aligned_cols=170 Identities=24% Similarity=0.426 Sum_probs=132.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|..+. ...+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 1 l~~~~l~~~~~~~~----------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~---G~i~~~g- 66 (204)
T cd03250 1 ISVEDASFTWDSGE----------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---GSVSVPG- 66 (204)
T ss_pred CEEeEEEEecCCCC----------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---CeEEEcC-
Confidence 47899999994210 001359999999999999999999999999999999999998864 9999988
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC-----------c----cccC
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL-----------T----HVAG 201 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----------~----~~~~ 201 (627)
+++|++|++.+++ .|++||+.+... ...+ +..+.++.+++ + ....
T Consensus 67 ----------~i~~~~q~~~l~~-~t~~enl~~~~~-----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (204)
T cd03250 67 ----------SIAYVSQEPWIQN-GTIRENILFGKP-----FDEE----RYEKVIKACALEPDLEILPDGDLTEIGEKGI 126 (204)
T ss_pred ----------EEEEEecCchhcc-CcHHHHhccCCC-----cCHH----HHHHHHHHcCcHHHHHhccCcccceecCCCC
Confidence 5999999998885 699999987521 1111 12223333322 2 1234
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHH-HHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIE-LLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~-~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
.++|||+|| ||+|||+.+++.+.+ +++++.+ .|+|||++||+++ .+.. ||++++|++|
T Consensus 127 ~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~-~~~~-~d~i~~l~~G 203 (204)
T cd03250 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQ-LLPH-ADQIVVLDNG 203 (204)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHH-HHhh-CCEEEEEeCC
Confidence 567999998 999999999999998 4666654 4899999999997 3665 9999999998
Q ss_pred e
Q 006897 263 S 263 (627)
Q Consensus 263 ~ 263 (627)
+
T Consensus 204 ~ 204 (204)
T cd03250 204 R 204 (204)
T ss_pred C
Confidence 5
No 323
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.96 E-value=9.5e-29 Score=302.87 Aligned_cols=189 Identities=23% Similarity=0.377 Sum_probs=152.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC-
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN- 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~- 134 (627)
.|+++||+++|+.+ .++++|+|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++
T Consensus 382 ~I~~~nVsf~Y~~~------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~i~~ 446 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR------------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE---GDIIIND 446 (1466)
T ss_pred cEEEEEEEEEcCCC------------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCC---CeEEEeC
Confidence 59999999999522 12469999999999999999999999999999999999999964 999994
Q ss_pred CccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC---------CC--C-----------------------
Q 006897 135 CHQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL---------KG--M----------------------- 178 (627)
Q Consensus 135 g~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~---------~~--~----------------------- 178 (627)
|+++. +...+|++||||+|++.+|+. ||+|||.++..... .. .
T Consensus 447 g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1466)
T PTZ00265 447 SHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDM 525 (1466)
T ss_pred CcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhc
Confidence 67753 245678899999999999985 99999998631000 00 0
Q ss_pred ---------------CHHHHHHHHHHHHHHcCCccc---------------cCCcCCccccC------------------
Q 006897 179 ---------------SHKEKEDRVESLMDELGLTHV---------------AGSFVGDEENR------------------ 210 (627)
Q Consensus 179 ---------------~~~~~~~~v~~~l~~lgL~~~---------------~~~~~gGe~qr------------------ 210 (627)
.....++++.++++.+++++. ...++||||||
T Consensus 526 ~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDE 605 (1466)
T PTZ00265 526 SNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE 605 (1466)
T ss_pred ccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 001124568888888877543 23466999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
||++||+.++..+.+.|+++.++.|+|+|+++|+++. + +.||+|++|++|
T Consensus 606 pTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 606 ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 9999999999999999999975458999999999983 4 789999999986
No 324
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.96 E-value=8.7e-29 Score=279.63 Aligned_cols=184 Identities=14% Similarity=0.239 Sum_probs=152.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++++ ...+.+|+|+||++++||++||+||||||||||+++|+|+++|++ |+|.++|
T Consensus 337 ~i~~~~v~f~y~~~~----------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~---G~i~~~g 403 (555)
T TIGR01194 337 SIELKDVHMNPKAPE----------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE---GEILLDG 403 (555)
T ss_pred eEEEEEEEEEeCCCC----------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC
Confidence 599999999995321 012359999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----------CCc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----------GSF 203 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----------~~~ 203 (627)
.++.+ ..++|+.++||+|++.+|.. |+++|.. ++..+++++++++.+++++.. ..+
T Consensus 404 ~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-----------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~L 471 (555)
T TIGR01194 404 AAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-----------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTAL 471 (555)
T ss_pred EECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc-----------cchhHHHHHHHHHHcCCchhhcccccccCCcccC
Confidence 98743 45688899999999999976 8888841 123355688899999987643 246
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHH-HHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLA-SMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~-~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
+|||||| ||++||+.+++.+.+.+. .+. ..|+|+|++||+++ ..+.||+|++|++|++
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~-~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i 548 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK-RQGKTIIIISHDDQ--YFELADQIIKLAAGCI 548 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccHH--HHHhCCEEEEEECCEE
Confidence 7999999 999999999999998664 443 35899999999997 4678999999999999
Q ss_pred Eee
Q 006897 265 VHY 267 (627)
Q Consensus 265 v~~ 267 (627)
++.
T Consensus 549 ~~~ 551 (555)
T TIGR01194 549 VKD 551 (555)
T ss_pred EEe
Confidence 864
No 325
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=2.3e-28 Score=276.01 Aligned_cols=189 Identities=24% Similarity=0.268 Sum_probs=152.5
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|++ ++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|.++
T Consensus 3 ~~i~~~nls~~~~~--------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~---G~i~~~ 65 (552)
T TIGR03719 3 YIYTMNRVSKVVPP--------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN---GEARPA 65 (552)
T ss_pred EEEEEeeEEEecCC--------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEec
Confidence 37999999999931 2469999999999999999999999999999999999998864 999986
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHh-cC-----------CCCCHHH--------------------
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF-RL-----------KGMSHKE-------------------- 182 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~-~~-----------~~~~~~~-------------------- 182 (627)
+ +..+|||+|++.+++.+||+||+.++... +. ......+
T Consensus 66 ~---------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (552)
T TIGR03719 66 P---------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA 136 (552)
T ss_pred C---------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 4 24599999999999999999999875321 00 0000010
Q ss_pred --HHHHHHHHHHHcCCcc---ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Q 006897 183 --KEDRVESLMDELGLTH---VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVV 239 (627)
Q Consensus 183 --~~~~v~~~l~~lgL~~---~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii 239 (627)
..+++.++++.+|++. ....++|||+|| ||++||+.++..+.+.|+++ +.|||
T Consensus 137 ~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvI 212 (552)
T TIGR03719 137 WDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVV 212 (552)
T ss_pred chhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEE
Confidence 1245677888888843 335667999999 99999999999999999875 35999
Q ss_pred EEccCccHHHHHHhhhheeecCCeEE-eeCCHHHHH
Q 006897 240 LSIHQPSYRILQYISKFLILSRGSVV-HYGSLELLE 274 (627)
Q Consensus 240 ~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~ 274 (627)
++|||++ .+..+||++++|++|+++ +.|+.+++.
T Consensus 213 iisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 9999998 488899999999999976 778887643
No 326
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=7.8e-29 Score=235.46 Aligned_cols=197 Identities=24% Similarity=0.411 Sum_probs=157.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
|++++|+++.+.... ..++++|+++|++|.+|+++.|+|.||||||||+++|+|.+.|++ |+|.++|
T Consensus 1 Mi~~~~~~~~f~~g~----------~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~---G~I~Idg 67 (263)
T COG1101 1 MISLSNATKTFFKGT----------PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS---GQILIDG 67 (263)
T ss_pred CcccccceeeecCCC----------hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC---ceEEECc
Confidence 356778887774332 245789999999999999999999999999999999999999975 9999999
Q ss_pred ccCCCh--hhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCC--CCCH---HHHHHHHHHHHHHcC--Ccccc----
Q 006897 136 HQIKKP--AQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLK--GMSH---KEKEDRVESLMDELG--LTHVA---- 200 (627)
Q Consensus 136 ~~~~~~--~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~--~~~~---~~~~~~v~~~l~~lg--L~~~~---- 200 (627)
.++.+. .+....++-|||++ ...+.||+.||+.++.. |.. +... ...++...+-++.++ |++..
T Consensus 68 ~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~-Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~i 146 (263)
T COG1101 68 VDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAES-RGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRI 146 (263)
T ss_pred eecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHh-cCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChh
Confidence 997542 23335688999996 46899999999998753 321 2222 233444555566654 44444
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
+.++|||||- -|++|||.+++.++++-.++.++.+.|.+||||+++ ++.++-+|.++|++|
T Consensus 147 glLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G 225 (263)
T COG1101 147 GLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSG 225 (263)
T ss_pred hhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCC
Confidence 3456999986 489999999999999999999999999999999999 589999999999999
Q ss_pred eEEee
Q 006897 263 SVVHY 267 (627)
Q Consensus 263 ~iv~~ 267 (627)
+|+.+
T Consensus 226 ~IvlD 230 (263)
T COG1101 226 KIVLD 230 (263)
T ss_pred eEEEE
Confidence 99975
No 327
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.6e-28 Score=273.68 Aligned_cols=195 Identities=19% Similarity=0.353 Sum_probs=156.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.+ +.+|+|+||++++||++||+||||||||||+|+|+|+.+|++ |+|.++
T Consensus 249 ~~i~~~~l~~~~-----------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~ 308 (491)
T PRK10982 249 VILEVRNLTSLR-----------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA---GTITLH 308 (491)
T ss_pred cEEEEeCccccc-----------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCc---cEEEEC
Confidence 479999999864 148999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--h-hhhcccEEEEccCC---CCCCCCCHHHHHHHHH-H--hcCCC-CCHHHHHHHHHHHHHHcCCc-ccc---
Q 006897 135 CHQIKK--P-AQLRKICGFVAQED---NLLPLLTVKETLMFSA-N--FRLKG-MSHKEKEDRVESLMDELGLT-HVA--- 200 (627)
Q Consensus 135 g~~~~~--~-~~~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~-~--~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~--- 200 (627)
|+++.. . ..+++.+||++|+. .+++.+|+.+|..+.. . ....+ ..+.+.++++.++++.+++. +..
T Consensus 309 g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 388 (491)
T PRK10982 309 GKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ 388 (491)
T ss_pred CEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc
Confidence 987632 1 23466799999985 4688888887743321 0 01111 12334456788999999984 333
Q ss_pred -CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 -GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 -~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
..++|||||| ||+|||+.++..++++|+++++ .|.|||++|||++ ++.++|||+++|++
T Consensus 389 ~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~~-~~~~~~d~v~~l~~ 466 (491)
T PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMP-ELLGITDRILVMSN 466 (491)
T ss_pred cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCChH-HHHhhCCEEEEEEC
Confidence 4566999999 9999999999999999999976 4899999999998 58899999999999
Q ss_pred CeEEeeCCHH
Q 006897 262 GSVVHYGSLE 271 (627)
Q Consensus 262 G~iv~~G~~~ 271 (627)
|+++..++.+
T Consensus 467 g~i~~~~~~~ 476 (491)
T PRK10982 467 GLVAGIVDTK 476 (491)
T ss_pred CEEEEEEccc
Confidence 9999877553
No 328
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.8e-28 Score=274.20 Aligned_cols=182 Identities=19% Similarity=0.272 Sum_probs=152.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 318 ~~l~~~~l~~~~~---------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~ 379 (530)
T PRK15064 318 NALEVENLTKGFD---------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS---GTVKWS 379 (530)
T ss_pred ceEEEEeeEEeeC---------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEC
Confidence 4799999999993 2459999999999999999999999999999999999998864 999987
Q ss_pred CccCCChhhhcccEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCcCCcc
Q 006897 135 CHQIKKPAQLRKICGFVAQEDN--LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSFVGDE 207 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~~gGe 207 (627)
|+ +.+||++|++. +++.+|+.||+.+.. . . ...+++++++++.+|+. +.. ..++|||
T Consensus 380 ~~---------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~---~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 443 (530)
T PRK15064 380 EN---------ANIGYYAQDHAYDFENDLTLFDWMSQWR---Q---E-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGE 443 (530)
T ss_pred Cc---------eEEEEEcccccccCCCCCcHHHHHHHhc---c---C-CccHHHHHHHHHHcCCChhHhcCcccccCHHH
Confidence 63 45999999863 556789999986421 1 1 12245688999999984 333 4566999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE-eeC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV-HYG 268 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G 268 (627)
+|| ||+|||+.++..+.+.|+++ +.|||++|||++ .+.++||++++|++|+++ +.|
T Consensus 444 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g 518 (530)
T PRK15064 444 KGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSG 518 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCC
Confidence 999 99999999999999999875 349999999998 488899999999999998 789
Q ss_pred CHHHHHH
Q 006897 269 SLELLEE 275 (627)
Q Consensus 269 ~~~~~~~ 275 (627)
+++++.+
T Consensus 519 ~~~~~~~ 525 (530)
T PRK15064 519 TYEEYLR 525 (530)
T ss_pred CHHHHHH
Confidence 8876643
No 329
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=3.1e-28 Score=242.78 Aligned_cols=176 Identities=24% Similarity=0.368 Sum_probs=138.1
Q ss_pred EEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 58 TVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 58 ~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.+.|+.+.|+. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|++
T Consensus 2 ~~~~~~~~~~~--------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~ 64 (218)
T cd03290 2 QVTNGYFSWGS--------------GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE---GKVHWSNKN 64 (218)
T ss_pred eeeeeEEecCC--------------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCcc
Confidence 57889998842 2469999999999999999999999999999999999998864 999999987
Q ss_pred CCCh------hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-------------
Q 006897 138 IKKP------AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH------------- 198 (627)
Q Consensus 138 ~~~~------~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------------- 198 (627)
+... ...++.++|++|++.+++ .|++||+.+... ... ++..++++.++|.+
T Consensus 65 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~ 134 (218)
T cd03290 65 ESEPSFEATRSRNRYSVAYAAQKPWLLN-ATVEENITFGSP-----FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI 134 (218)
T ss_pred cccccccccchhhcceEEEEcCCCcccc-ccHHHHHhhcCc-----CCH----HHHHHHHHHhCcHHHHHhCcCccccCc
Confidence 5321 124567999999998874 699999987521 111 12334455555432
Q ss_pred --ccCCcCCccccC------------------CCCCCCHHHHHHHHH--HHHHHHHcCCCEEEEEccCccHHHHHHhhhh
Q 006897 199 --VAGSFVGDEENR------------------GISGLDSTSALQVIE--LLASMAKAKQRTVVLSIHQPSYRILQYISKF 256 (627)
Q Consensus 199 --~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~--~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i 256 (627)
....++|||+|| ||+|||+.++..+++ +++.+. +.|.|+|++||+++. + ..||++
T Consensus 135 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~~~-~-~~~d~i 211 (218)
T cd03290 135 GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKLQY-L-PHADWI 211 (218)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCChHH-H-hhCCEE
Confidence 234567999998 999999999999998 666664 458999999999983 5 579999
Q ss_pred eeecCCe
Q 006897 257 LILSRGS 263 (627)
Q Consensus 257 ~vL~~G~ 263 (627)
++|++|.
T Consensus 212 ~~l~~G~ 218 (218)
T cd03290 212 IAMKDGS 218 (218)
T ss_pred EEecCCC
Confidence 9999884
No 330
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.96 E-value=6e-28 Score=249.14 Aligned_cols=177 Identities=24% Similarity=0.392 Sum_probs=140.9
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...|+++|+++.. +.+|+|+||++++||+++|+||||||||||+++|+|+++|.. |+|.+
T Consensus 37 ~~~l~i~nls~~~-----------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~---G~I~i 96 (282)
T cd03291 37 DNNLFFSNLCLVG-----------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKH 96 (282)
T ss_pred CCeEEEEEEEEec-----------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEE
Confidence 4469999999841 248999999999999999999999999999999999998864 99998
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc---------------
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------------- 198 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------------- 198 (627)
+| .++|++|++.+++. ||+||+.+.... .. .++.++++.+++.+
T Consensus 97 ~g-----------~i~yv~q~~~l~~~-tv~enl~~~~~~-----~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~ 155 (282)
T cd03291 97 SG-----------RISFSSQFSWIMPG-TIKENIIFGVSY-----DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE 155 (282)
T ss_pred CC-----------EEEEEeCccccccc-CHHHHhhccccc-----CH----HHHHHHHHHhCCHHHHHhccccccceecC
Confidence 87 38999999988875 999999875211 11 11222333333321
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHH-HHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELL-ASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L-~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
....++|||+|| ||+|||+.++..+.+.+ ++++ .+.|||++||+++. + ..||++++|
T Consensus 156 ~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~-~-~~~d~i~~l 231 (282)
T cd03291 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKMEH-L-KKADKILIL 231 (282)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChHH-H-HhCCEEEEE
Confidence 124677999998 99999999999999865 5554 37899999999984 5 689999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
++|++++.|+++++.+
T Consensus 232 ~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 232 HEGSSYFYGTFSELQS 247 (282)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999887643
No 331
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.95 E-value=2.7e-28 Score=300.85 Aligned_cols=190 Identities=21% Similarity=0.278 Sum_probs=160.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+++|++ +.+.+|+||||+|++||.+||+|+||||||||+++|.|+++ . +|+|.+|
T Consensus 1216 g~I~f~nVs~~Y~~-------------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~Id 1278 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-------------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQID 1278 (1490)
T ss_pred CeEEEEEEEEEeCC-------------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEEC
Confidence 36999999999953 23469999999999999999999999999999999999985 3 3999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc------------
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------ 200 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------ 200 (627)
|.++.+ ...+|++++||||++.+|++ |++|||.... +..++++.++|+.++|.+..
T Consensus 1279 G~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~---------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~ 1348 (1490)
T TIGR01271 1279 GVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE---------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348 (1490)
T ss_pred CEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc---------CCCHHHHHHHHHHCCCHHHHHhCccccccccc
Confidence 999743 46789999999999999987 9999995421 12346688888888875432
Q ss_pred ---CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 201 ---GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 201 ---~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
..++|||||| |||+||+.+...|.+.|++.. .++|||+|+|+++. ...||||++|
T Consensus 1349 e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~t--i~~~DrIlvL 1424 (1490)
T TIGR01271 1349 DGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEA--LLECQQFLVI 1424 (1490)
T ss_pred cCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH--HHhCCEEEEE
Confidence 1356899998 999999999999999999874 47999999999973 4569999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
++|++++.|+++++.+
T Consensus 1425 ~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1425 EGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred ECCEEEEeCCHHHHHc
Confidence 9999999999998863
No 332
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=4.3e-28 Score=224.39 Aligned_cols=208 Identities=22% Similarity=0.368 Sum_probs=173.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|+++.|..+.+.. ......+++.|||++++|+.+||+|.||||||||.|+|+|.++|++ |+|.+||
T Consensus 4 LLeV~nLsKtF~~~~~lf------~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs---G~il~n~ 74 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLF------RRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GEILIND 74 (267)
T ss_pred hhhhhhhhhhhhhhhhhh------hhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC---ceEEECC
Confidence 589999999986543211 1133568999999999999999999999999999999999999975 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-ccc----CCcCCc
Q 006897 136 HQIKK--PAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVA----GSFVGD 206 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~----~~~~gG 206 (627)
+++.- .....++|-++|||+ .+.|.+.+..-|..++++. ..+..+.+.+++.+-|+.+||- +.+ +.+..|
T Consensus 75 ~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~-T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~ 153 (267)
T COG4167 75 HPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN-TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPG 153 (267)
T ss_pred ccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc-ccCChHHHHHHHHHHHHHhccCccccccchhhcCch
Confidence 98632 222346799999996 4778888888888776543 2356677889999999999984 333 344589
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+|| ...+||...+.++.++..++.++.|.+-|.++.++.. +.+++|+|+||++|++++.|
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~-iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGM-IKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhH-hhhhcccEEEEecCceeecC
Confidence 9999 4689999999999999999999999999999999995 89999999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
++.++.
T Consensus 233 ~t~~v~ 238 (267)
T COG4167 233 STADVL 238 (267)
T ss_pred Chhhhh
Confidence 998774
No 333
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=6.3e-28 Score=236.47 Aligned_cols=170 Identities=22% Similarity=0.291 Sum_probs=137.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|++++|. ++.+++ +||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 1 ~l~~~~l~~~~~---------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g 61 (195)
T PRK13541 1 MLSLHQLQFNIE---------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSS---GNIYYKN 61 (195)
T ss_pred CeEEEEeeEEEC---------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 478999999993 223555 999999999999999999999999999999998864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
.++.... ++.++|++|+..+++.+||+||+.+..... ...++++++++.+++++..+ .++|||+||
T Consensus 62 ~~i~~~~--~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl 132 (195)
T PRK13541 62 CNINNIA--KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-------NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIV 132 (195)
T ss_pred cccChhh--hhhEEeccCCcCCCccCCHHHHHHHHHHhc-------ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHH
Confidence 8853221 356899999987778899999998864321 12346788899999976544 456999998
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhh
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKF 256 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i 256 (627)
||+|||+.++..+.+.|++..+ .|+|+|++||+++. + +.+|-+
T Consensus 133 ~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~-i-~~~~~~ 192 (195)
T PRK13541 133 AIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLESS-I-KSAQIL 192 (195)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCccc-c-chhhee
Confidence 9999999999999999987654 58999999999973 3 446644
No 334
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.95 E-value=7.1e-28 Score=229.95 Aligned_cols=146 Identities=32% Similarity=0.419 Sum_probs=123.0
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++|++++|+. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 1 i~~~~~~~~~~~--------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~ 63 (166)
T cd03223 1 IELENLSLATPD--------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS---GRIGMPEG 63 (166)
T ss_pred CEEEEEEEEcCC--------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCC
Confidence 468999999931 2359999999999999999999999999999999999998864 99998763
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC------
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR------ 210 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr------ 210 (627)
+.++|++|++.++ ..|++||+.+. ....++|||+||
T Consensus 64 ---------~~i~~~~q~~~~~-~~tv~~nl~~~----------------------------~~~~LS~G~~~rv~lara 105 (166)
T cd03223 64 ---------EDLLFLPQRPYLP-LGTLREQLIYP----------------------------WDDVLSGGEQQRLAFARL 105 (166)
T ss_pred ---------ceEEEECCCCccc-cccHHHHhhcc----------------------------CCCCCCHHHHHHHHHHHH
Confidence 5699999998766 56999999753 124455666665
Q ss_pred ------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 211 ------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 211 ------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
||+|||+.++..+.+.|+++ ++|+|++||+++ ..+.||++++|++|.
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 99999999999999999875 579999999986 357999999998753
No 335
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=8.9e-28 Score=282.78 Aligned_cols=204 Identities=23% Similarity=0.378 Sum_probs=181.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..+.++|+++.|+.. +.+++++|+.|++||+.|++|+|||||||++|+|+|..+|++ |++.++
T Consensus 563 ~~~~~~~L~k~y~~~--------------~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~---G~a~i~ 625 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK--------------DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTS---GEALIK 625 (885)
T ss_pred ceEEEcceeeeecch--------------hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCc---ceEEEe
Confidence 468899999999522 118999999999999999999999999999999999999974 999999
Q ss_pred CccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCcc
Q 006897 135 CHQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDE 207 (627)
Q Consensus 135 g~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe 207 (627)
|+++.. ..+.++.+||+||++.+++.+|.+|++.+.++++ +.++.+.++.++.+++.+||.+.+++. +||+
T Consensus 626 g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr--G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~ 703 (885)
T KOG0059|consen 626 GHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR--GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGN 703 (885)
T ss_pred cCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc--CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcc
Confidence 998743 2347899999999999999999999999998765 567778888899999999998877654 4999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
|+| |++|+||.+++.++++++++.+ +|+.||++||.++ |.+.+|||+.+|.+|++...|+
T Consensus 704 kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs 781 (885)
T KOG0059|consen 704 KRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGS 781 (885)
T ss_pred hhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecC
Confidence 988 9999999999999999999976 4669999999999 6999999999999999999999
Q ss_pred HHHHHHHHHh
Q 006897 270 LELLEETINN 279 (627)
Q Consensus 270 ~~~~~~~~~~ 279 (627)
++++...+..
T Consensus 782 ~q~LKsrfG~ 791 (885)
T KOG0059|consen 782 PQELKSRYGS 791 (885)
T ss_pred hHHHHhhcCC
Confidence 9999877643
No 336
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=2.9e-27 Score=267.19 Aligned_cols=186 Identities=22% Similarity=0.306 Sum_probs=150.9
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+++|++ |+|.+
T Consensus 322 ~~~l~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~ 383 (556)
T PRK11819 322 DKVIEAENLSKSFG---------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS---GTIKI 383 (556)
T ss_pred CeEEEEEeEEEEEC---------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEE
Confidence 34799999999993 3459999999999999999999999999999999999999864 99998
Q ss_pred CCccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-c----cCCcCCcc
Q 006897 134 NCHQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-V----AGSFVGDE 207 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~----~~~~~gGe 207 (627)
++ + ..+||++|+. .+++.+||.||+.++.... +.... ..++.++++.+|+.+ . ...++|||
T Consensus 384 ~~-~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 450 (556)
T PRK11819 384 GE-T--------VKLAYVDQSRDALDPNKTVWEEISGGLDII--KVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGE 450 (556)
T ss_pred CC-c--------eEEEEEeCchhhcCCCCCHHHHHHhhcccc--ccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHH
Confidence 43 2 1499999996 6788899999999864221 11111 223557899999953 3 34567999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC-CeEE-ee
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR-GSVV-HY 267 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~-G~iv-~~ 267 (627)
+|| ||+|||+.++..+.+.|+++ .| |||++|||++ ++.++||++++|++ |++. +.
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~ 525 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF---PG-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFE 525 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CC-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEec
Confidence 999 99999999999999999986 24 8999999998 48899999999986 7876 57
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+.++..+
T Consensus 526 g~~~~~~~ 533 (556)
T PRK11819 526 GNFQEYEE 533 (556)
T ss_pred CCHHHHHH
Confidence 77765533
No 337
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=2.5e-27 Score=240.26 Aligned_cols=169 Identities=17% Similarity=0.249 Sum_probs=136.6
Q ss_pred eeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCC
Q 006897 86 ILKSVSFEAR-----DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPL 160 (627)
Q Consensus 86 iL~~vsl~i~-----~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~ 160 (627)
.++|++++++ +||+++|+||||||||||+++|+|+++|++ |+|.++|+ .++|++|+...++.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~---G~i~~~g~----------~i~~~~q~~~~~~~ 75 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDE---GDIEIELD----------TVSYKPQYIKADYE 75 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCc----------eEEEecccccCCCC
Confidence 6777888776 799999999999999999999999999864 99999874 48999999877777
Q ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CCCCCCHH
Q 006897 161 LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GISGLDST 218 (627)
Q Consensus 161 lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------PtsgLD~~ 218 (627)
+||+|++.+..... . ......+++++.+||++..+ .++|||+|| ||++||+.
T Consensus 76 ~tv~e~l~~~~~~~--~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~ 149 (246)
T cd03237 76 GTVRDLLSSITKDF--Y----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE 149 (246)
T ss_pred CCHHHHHHHHhhhc--c----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 89999997653211 0 11234678899999976544 466999998 99999999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE--eeCCHHHHH
Q 006897 219 SALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV--HYGSLELLE 274 (627)
Q Consensus 219 ~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv--~~G~~~~~~ 274 (627)
++..+.+.|++++++.|+|||++|||++ ++..+||++++|+++..+ ..++++++.
T Consensus 150 ~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 150 QRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999999999998766899999999998 478899999999765433 345555443
No 338
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.3e-27 Score=232.78 Aligned_cols=197 Identities=24% Similarity=0.346 Sum_probs=163.9
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...|+++|++.+| ++++||+|||++|++||-.+|+|||||||||||++++|..+|.+ |.+.+
T Consensus 29 ~~li~l~~v~v~r---------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pss---g~~~~ 90 (257)
T COG1119 29 EPLIELKNVSVRR---------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSS---GDVTL 90 (257)
T ss_pred cceEEecceEEEE---------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCC---Cceee
Confidence 4579999999999 35679999999999999999999999999999999999999863 99999
Q ss_pred CCccCCC---hhhhcccEEEEccC--CCCCCCCCHHHHHHHHHH--hcCCC-CCHHHHHHHHHHHHHHcCCccccCCcC-
Q 006897 134 NCHQIKK---PAQLRKICGFVAQE--DNLLPLLTVKETLMFSAN--FRLKG-MSHKEKEDRVESLMDELGLTHVAGSFV- 204 (627)
Q Consensus 134 ~g~~~~~---~~~~r~~ig~v~Q~--~~l~~~lTV~e~l~~~~~--~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~~- 204 (627)
.|+..-+ ..++|++||+|.-. ..+.+..+|+|-+.-+.. ..... ...++..+++..+++.+|+.+.+++..
T Consensus 91 ~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~ 170 (257)
T COG1119 91 LGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG 170 (257)
T ss_pred eeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh
Confidence 9987622 26789999999754 344556789888865432 11111 234567788999999999999887664
Q ss_pred ---CccccC------------------CCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 205 ---GDEENR------------------GISGLDSTSALQVIELLASMAKA-KQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 205 ---gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~-~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
-||||| |++|||...+..+++.|.+++.. .+.++|+|||+.+ |+...+++++.+++|
T Consensus 171 ~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g 249 (257)
T COG1119 171 SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEG 249 (257)
T ss_pred hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCC
Confidence 688887 99999999999999999999753 2679999999998 699999999999999
Q ss_pred eEEeeCC
Q 006897 263 SVVHYGS 269 (627)
Q Consensus 263 ~iv~~G~ 269 (627)
+++++|.
T Consensus 250 ~v~~~g~ 256 (257)
T COG1119 250 EVVAQGK 256 (257)
T ss_pred ceeeccc
Confidence 9999874
No 339
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=3.5e-27 Score=266.30 Aligned_cols=177 Identities=17% Similarity=0.225 Sum_probs=149.9
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+++++|+++.|+ + ..|+++||++++||+++|+||||||||||+|+|+|+++|++ |+|.+
T Consensus 338 ~~~l~~~~ls~~~~---------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~---G~I~~ 398 (590)
T PRK13409 338 ETLVEYPDLTKKLG---------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE---GEVDP 398 (590)
T ss_pred ceEEEEcceEEEEC---------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEE
Confidence 45799999999993 1 24999999999999999999999999999999999999864 99987
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
+ ..+||++|+..+++.+||+||+.+.... .. ....++++++.+||.+..+ +++|||+|
T Consensus 399 ~-----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~Q 460 (590)
T PRK13409 399 E-----------LKISYKPQYIKPDYDGTVEDLLRSITDD----LG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQ 460 (590)
T ss_pred e-----------eeEEEecccccCCCCCcHHHHHHHHhhh----cC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHH
Confidence 5 1489999998888889999999875321 11 1235688999999976554 55699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
| ||+|||+.++..+.++|++++++.|+|||++|||++ .+..+|||+++|++ ++...|.
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcC-cceeeee
Confidence 9 999999999999999999998767899999999998 48889999999964 7777665
No 340
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=5.6e-27 Score=264.76 Aligned_cols=185 Identities=23% Similarity=0.309 Sum_probs=149.9
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++|++++|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+
T Consensus 320 ~~~l~~~~l~~~~~---------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~ 381 (552)
T TIGR03719 320 DKVIEAENLSKGFG---------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS---GTIKI 381 (552)
T ss_pred CeEEEEeeEEEEEC---------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEE
Confidence 34799999999993 2459999999999999999999999999999999999998864 99998
Q ss_pred CCccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc----CCcCCcc
Q 006897 134 NCHQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA----GSFVGDE 207 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~----~~~~gGe 207 (627)
++ + ..+||++|++ .+++.+||.||+.++.... +.... +.++.++++.+|+.+ .. .+++|||
T Consensus 382 ~~-~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 448 (552)
T TIGR03719 382 GE-T--------VKLAYVDQSRDALDPNKTVWEEISGGLDII--QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGE 448 (552)
T ss_pred CC-c--------eEEEEEeCCccccCCCCcHHHHHHhhcccc--ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHH
Confidence 43 2 1599999996 4788899999999864221 11111 234567899999963 33 4567999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC-CeEE-ee
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR-GSVV-HY 267 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~-G~iv-~~ 267 (627)
+|| ||+|||+.++..+.+.|+++. + |||++|||++ .+.++||++++|++ |++. +.
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~ 523 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFE 523 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeC
Confidence 999 999999999999999999872 4 8999999998 48889999999986 5776 56
Q ss_pred CCHHHHH
Q 006897 268 GSLELLE 274 (627)
Q Consensus 268 G~~~~~~ 274 (627)
|+.++..
T Consensus 524 g~~~~~~ 530 (552)
T TIGR03719 524 GNYSEYE 530 (552)
T ss_pred CCHHHHH
Confidence 7765543
No 341
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.95 E-value=4.2e-27 Score=233.78 Aligned_cols=171 Identities=18% Similarity=0.254 Sum_probs=135.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE-ECCccCCChhhhcccEEEEccCCCCCCCCCHH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT-VNCHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~-i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
+|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|. ++|..+ .+.|++.+++.+|++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s---G~i~~~~~~~~-----------~~~~~~~l~~~ltv~ 67 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDE---GDFIGLRGDAL-----------PLGANSFILPGLTGE 67 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---CCEEEecCcee-----------ccccccccCCcCcHH
Confidence 7999999999999999999999999999999999998864 9996 666431 123456788999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CCCCCCHHHHHH
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GISGLDSTSALQ 222 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------PtsgLD~~~~~~ 222 (627)
||+.+..... +.+.++.. +.+.+.++|++..+ .++|||+|| |++++|+.++..
T Consensus 68 enl~~~~~~~--~~~~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~ 142 (213)
T PRK15177 68 ENARMMASLY--GLDGDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLR 142 (213)
T ss_pred HHHHHHHHHc--CCCHHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence 9999876432 22333222 23345566665443 456999998 999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHHH
Q 006897 223 VIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETIN 278 (627)
Q Consensus 223 i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~~ 278 (627)
+.+.+.+..+ ++|+|++||+++ ++.++||++++|++|++++.|+.+++.+.+.
T Consensus 143 ~~~~l~~~~~--~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 143 MQAALACQLQ--QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred HHHHHHHHhh--CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 9998866543 468999999998 4788999999999999999999998876654
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=265.05 Aligned_cols=182 Identities=19% Similarity=0.274 Sum_probs=150.2
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||++.|+ ++.+|+|+||+|++||++||+||||||||||||+|+|+++|++ |+|.+
T Consensus 310 ~~~l~~~~l~~~y~---------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~ 371 (638)
T PRK10636 310 NPLLKMEKVSAGYG---------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVS---GEIGL 371 (638)
T ss_pred CceEEEEeeEEEeC---------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEE
Confidence 45799999999993 3469999999999999999999999999999999999998864 99998
Q ss_pred CCccCCChhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc----CCcCCc
Q 006897 134 NCHQIKKPAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA----GSFVGD 206 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~----~~~~gG 206 (627)
++. ..+||++|+. .+.+..|+.+++.-. . .....+++.++|+.+++.. .. ..++||
T Consensus 372 ~~~---------~~igy~~Q~~~~~l~~~~~~~~~~~~~---~-----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG 434 (638)
T PRK10636 372 AKG---------IKLGYFAQHQLEFLRADESPLQHLARL---A-----PQELEQKLRDYLGGFGFQGDKVTEETRRFSGG 434 (638)
T ss_pred CCC---------EEEEEecCcchhhCCccchHHHHHHHh---C-----chhhHHHHHHHHHHcCCChhHhcCchhhCCHH
Confidence 631 2599999974 355667888876421 1 1223467889999999953 33 456799
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE-ee
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV-HY 267 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv-~~ 267 (627)
|+|| ||+|||+.++..+.+.|+++ .| |||+||||+. .+.++||++++|++|+++ +.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcC
Confidence 9999 99999999999999999986 24 9999999998 488999999999999997 78
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+.++..+
T Consensus 510 g~~~~~~~ 517 (638)
T PRK10636 510 GDLEDYQQ 517 (638)
T ss_pred CCHHHHHH
Confidence 99887643
No 343
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=5.4e-27 Score=238.86 Aligned_cols=180 Identities=23% Similarity=0.330 Sum_probs=143.6
Q ss_pred EeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE-------
Q 006897 60 RNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT------- 132 (627)
Q Consensus 60 ~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~------- 132 (627)
.||+++|+. .+.+|+|+| .+++||+++|+||||||||||||+|+|+++|+. |+|.
T Consensus 4 ~~~~~~y~~--------------~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~---G~I~~~~~~~~ 65 (255)
T cd03236 4 DEPVHRYGP--------------NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNL---GKFDDPPDWDE 65 (255)
T ss_pred cCcceeecC--------------cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEeeccccch
Confidence 367888832 125899999 599999999999999999999999999999874 9996
Q ss_pred ----ECCccCCCh-hhhc---ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC---
Q 006897 133 ----VNCHQIKKP-AQLR---KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG--- 201 (627)
Q Consensus 133 ----i~g~~~~~~-~~~r---~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--- 201 (627)
++|+++.+. ...+ ..++|++|+..+++. ++.+++.+.. ...+.++++.++++.+||++..+
T Consensus 66 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-------~~~~~~~~~~~~l~~~gl~~~~~~~~ 137 (255)
T cd03236 66 ILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-------KKKDERGKLDELVDQLELRHVLDRNI 137 (255)
T ss_pred hhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh-------chhHHHHHHHHHHHHcCCchhhcCCh
Confidence 778775321 1222 247999999888874 8888887642 12334567899999999976554
Q ss_pred -CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 202 -SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 202 -~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
.++|||+|| ||++||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|+ |
T Consensus 138 ~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~-~~~~~ad~i~~l~-~ 214 (255)
T cd03236 138 DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLA-VLDYLSDYIHCLY-G 214 (255)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHHhCCEEEEEC-C
Confidence 456999998 9999999999999999999976 4899999999998 4778999999995 6
Q ss_pred eEEeeC
Q 006897 263 SVVHYG 268 (627)
Q Consensus 263 ~iv~~G 268 (627)
++.+.|
T Consensus 215 ~~~~~~ 220 (255)
T cd03236 215 EPGAYG 220 (255)
T ss_pred CCCcce
Confidence 666544
No 344
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=3.5e-27 Score=211.82 Aligned_cols=173 Identities=23% Similarity=0.329 Sum_probs=147.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
++.++||+.+. .+...|-|+|++|.+||++.||||||||||||+..+.|.+.+.-.-.|++++|+
T Consensus 2 ~l~l~nvsl~l---------------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~ 66 (213)
T COG4136 2 MLCLKNVSLRL---------------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE 66 (213)
T ss_pred ceeeeeeeecC---------------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECC
Confidence 57899999765 245689999999999999999999999999999999999987633359999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
+++......+|++|++|||+.+||.++|.+||.|+..... +.+.+++.++.+|++.||+...+ +++||||-|
T Consensus 67 ~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~---KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARv 143 (213)
T COG4136 67 QRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL---KGNARRNAANAALERSGLDGAFHQDPATLSGGQRARV 143 (213)
T ss_pred eeccccchhhhheeeeecccccccccccccceEEecCccc---ccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHH
Confidence 9975555678899999999999999999999999754332 23456777899999999987654 566999976
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
|+|.||..-+.++.+.+-.-.++.|..+|++|||..
T Consensus 144 aL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 144 ALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999999999887777778999999999987
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=3e-26 Score=262.46 Aligned_cols=184 Identities=22% Similarity=0.336 Sum_probs=150.0
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++|+ ++.+|+|+||+|++||++||+||||||||||||+|+|+++|+. |+|.+
T Consensus 317 ~~~l~~~~l~~~~~---------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~ 378 (635)
T PRK11147 317 KIVFEMENVNYQID---------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADS---GRIHC 378 (635)
T ss_pred CceEEEeeeEEEEC---------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEE
Confidence 45799999999993 3469999999999999999999999999999999999998864 99988
Q ss_pred CCccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cc----cCCcCCcc
Q 006897 134 NCHQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HV----AGSFVGDE 207 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~----~~~~~gGe 207 (627)
|.+ -.+||++|+. .+++.+||.||+.++... . ... ....++.++++.+++. +. ...++|||
T Consensus 379 -~~~--------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 445 (635)
T PRK11147 379 -GTK--------LEVAYFDQHRAELDPEKTVMDNLAEGKQE-V-MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGE 445 (635)
T ss_pred -CCC--------cEEEEEeCcccccCCCCCHHHHHHhhccc-c-ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHH
Confidence 433 1499999985 588899999999875321 0 111 1234678899999985 33 34567999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec-CCeEEe-e
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS-RGSVVH-Y 267 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~-~G~iv~-~ 267 (627)
||| ||+|||+.++..+.+.|+++ +.|||++|||.+ .+.++||++++|+ +|++.. .
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~ 520 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYV 520 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEcc
Confidence 999 99999999999999999875 359999999998 4888999999997 899865 5
Q ss_pred CCHHHH
Q 006897 268 GSLELL 273 (627)
Q Consensus 268 G~~~~~ 273 (627)
|+.++.
T Consensus 521 g~y~~y 526 (635)
T PRK11147 521 GGYHDA 526 (635)
T ss_pred CCHHHH
Confidence 666654
No 346
>PLN03232 ABC transporter C family member; Provisional
Probab=99.94 E-value=2.4e-26 Score=283.99 Aligned_cols=181 Identities=23% Similarity=0.404 Sum_probs=147.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|++++|+.+ .++++|+|+||++++||.++|+||||||||||+++|.|.++|.+ |.+.
T Consensus 614 ~I~~~~vsF~y~~~------------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~---G~i~--- 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK------------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE---TSSV--- 675 (1495)
T ss_pred cEEEEeeEEEcCCC------------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccC---CCEE---
Confidence 58999999999531 23468999999999999999999999999999999999999864 6542
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc---------------
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA--------------- 200 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~--------------- 200 (627)
.+++.|+||+|++.++.. |++|||.|+.. . .+++.+++++..+|++..
T Consensus 676 -------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~-----~----~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G 738 (1495)
T PLN03232 676 -------VIRGSVAYVPQVSWIFNA-TVRENILFGSD-----F----ESERYWRAIDVTALQHDLDLLPGRDLTEIGERG 738 (1495)
T ss_pred -------EecCcEEEEcCccccccc-cHHHHhhcCCc-----c----CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCC
Confidence 356789999999999976 99999998731 1 234566677766664321
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHH-HHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIEL-LASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~-L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
..++|||||| |||+||+.+++++++. ++... .|+|+|++||+++ ..+.||+|++|++
T Consensus 739 ~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~--~l~~aD~Ii~L~~ 814 (1495)
T PLN03232 739 VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH--FLPLMDRIILVSE 814 (1495)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--hHHhCCEEEEEeC
Confidence 2356999999 9999999999989765 55443 4799999999997 4678999999999
Q ss_pred CeEEeeCCHHHHHH
Q 006897 262 GSVVHYGSLELLEE 275 (627)
Q Consensus 262 G~iv~~G~~~~~~~ 275 (627)
|++++.|+.+++.+
T Consensus 815 G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 815 GMIKEEGTFAELSK 828 (1495)
T ss_pred CEEEEecCHHHHHh
Confidence 99999999988753
No 347
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.4e-27 Score=240.36 Aligned_cols=191 Identities=26% Similarity=0.377 Sum_probs=156.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.+.++|+++.|. ..+++|+++||++++|+.+|++||||+||||++++|...+.+++ |.|.++|
T Consensus 262 ~v~F~~V~F~y~--------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s---G~I~id~ 324 (497)
T COG5265 262 AVAFINVSFAYD--------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS---GSITIDG 324 (497)
T ss_pred eEEEEEEEeecc--------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC---ceEEEcc
Confidence 589999999995 34679999999999999999999999999999999999998764 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.. ...+|+-||.||||..||.+ |+..|+.++. +..+.+| +..+.+...+.+.
T Consensus 325 qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr----~~at~ee----v~aaa~~aqi~~fi~~lP~gy~t~Vge 395 (497)
T COG5265 325 QDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGR----PDATAEE----VGAAAEAAQIHDFIQSLPEGYDTGVGE 395 (497)
T ss_pred hhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccC----ccccHHH----HHHHHHHhhhhHHHHhCchhhhcccch
Confidence 99854 46789999999999999976 9999999873 1122222 3333333332221
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.-+++|||||| .||+||..+.++|...|++++ .|+|.+++.|+++. + --+|.|++|+
T Consensus 396 rglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlst-i-~~adeiivl~ 471 (497)
T COG5265 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLST-I-IDADEIIVLD 471 (497)
T ss_pred heeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhh-c-cCCceEEEee
Confidence 12345999999 589999999999999999997 48999999999984 4 4589999999
Q ss_pred CCeEEeeCCHHHHHHH
Q 006897 261 RGSVVHYGSLELLEET 276 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~~ 276 (627)
+|+|++.|+.+++...
T Consensus 472 ~g~i~erg~h~~ll~~ 487 (497)
T COG5265 472 NGRIVERGTHEELLAA 487 (497)
T ss_pred CCEEEecCcHHHHHHc
Confidence 9999999999988653
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=1.5e-25 Score=257.62 Aligned_cols=185 Identities=19% Similarity=0.328 Sum_probs=146.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.|++ .+.+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|.++
T Consensus 507 ~~L~~~~ls~~y~~--------------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~---G~I~~~ 569 (718)
T PLN03073 507 PIISFSDASFGYPG--------------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS---GTVFRS 569 (718)
T ss_pred ceEEEEeeEEEeCC--------------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---ceEEEC
Confidence 47999999999931 2358999999999999999999999999999999999999864 999876
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-c----cCCcCCcccc
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-V----AGSFVGDEEN 209 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~----~~~~~gGe~q 209 (627)
+ +..+||++|+. .+.+++.++..+......+.. .++++.++|+.+|+.+ . ...++|||+|
T Consensus 570 ~---------~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkq 634 (718)
T PLN03073 570 A---------KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 634 (718)
T ss_pred C---------ceeEEEEeccc--cccCCcchhHHHHHHHhcCCC----CHHHHHHHHHHCCCChHHhcCCccccCHHHHH
Confidence 4 23599999985 244566666543221111111 2356888999999963 3 3456799999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE-eeCCH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV-HYGSL 270 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~ 270 (627)
| ||+|||+.++..+++.|++. .| |||++|||++. +..+||++++|++|+++ +.|+.
T Consensus 635 RvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~~-i~~~~drv~~l~~G~i~~~~g~~ 709 (718)
T PLN03073 635 RVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEHL-ISGSVDELWVVSEGKVTPFHGTF 709 (718)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHHH-HHHhCCEEEEEECCEEEEeCCCH
Confidence 9 99999999999998888764 24 99999999984 88899999999999998 78888
Q ss_pred HHHHHH
Q 006897 271 ELLEET 276 (627)
Q Consensus 271 ~~~~~~ 276 (627)
++..++
T Consensus 710 ~~~~~~ 715 (718)
T PLN03073 710 HDYKKT 715 (718)
T ss_pred HHHHHH
Confidence 766544
No 349
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.9e-26 Score=210.64 Aligned_cols=196 Identities=26% Similarity=0.381 Sum_probs=152.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
+.++++++|+.|.. ..-.+||||++.|||+++|+|+|||||||||++|++++.|+. |+|.+.
T Consensus 5 PLL~V~~lsk~Yg~---------------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~---G~v~Y~ 66 (258)
T COG4107 5 PLLSVSGLSKLYGP---------------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA---GTVTYR 66 (258)
T ss_pred cceeehhhhhhhCC---------------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCC---CeEEEE
Confidence 37899999999953 346899999999999999999999999999999999999975 999885
Q ss_pred CccC--CC-----hh----hhcccEEEEccCCC--CCCC----CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc
Q 006897 135 CHQI--KK-----PA----QLRKICGFVAQEDN--LLPL----LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197 (627)
Q Consensus 135 g~~~--~~-----~~----~~r~~ig~v~Q~~~--l~~~----lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 197 (627)
-++- .+ .. -+|..-|+|.|++. +-.. -.+.|-+.-.. .|. -..+++...++|+++.++
T Consensus 67 ~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G-~RH----YG~iR~~a~~WL~~VEI~ 141 (258)
T COG4107 67 MRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG-ARH----YGNIRAEAQDWLEEVEID 141 (258)
T ss_pred cCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhh-hhh----hhhHHHHHHHHHHhcccC
Confidence 4321 11 11 13456799999963 3222 23444443211 111 134566788899998775
Q ss_pred -----cccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhh
Q 006897 198 -----HVAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYIS 254 (627)
Q Consensus 198 -----~~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D 254 (627)
+...+.+||++|| ||.|||...+..++++++.+.++.|.+++++|||+.. +.-++|
T Consensus 142 ~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~ 220 (258)
T COG4107 142 LDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLAD 220 (258)
T ss_pred cccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhh
Confidence 3445667999988 9999999999999999999999999999999999984 556799
Q ss_pred hheeecCCeEEeeCCHHHHH
Q 006897 255 KFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 255 ~i~vL~~G~iv~~G~~~~~~ 274 (627)
|.++|++|++++.|-.+.+.
T Consensus 221 rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 221 RLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred cceeecCCCEeccccccccc
Confidence 99999999999999776554
No 350
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.93 E-value=3.9e-26 Score=262.11 Aligned_cols=173 Identities=20% Similarity=0.278 Sum_probs=140.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||++.|++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 450 ~~i~~~nv~~~~~~--------------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~---G~i~~~ 512 (659)
T TIGR00954 450 NGIKFENIPLVTPN--------------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYG---GRLTKP 512 (659)
T ss_pred CeEEEEeeEEECCC--------------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEeec
Confidence 36999999998841 2359999999999999999999999999999999999998764 998875
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------C
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA-------------G 201 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------------~ 201 (627)
+ ++.++||+|++.+++. |++||+.++...... ..+...+++++++++.+|+++.. +
T Consensus 513 ~---------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~-~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~ 581 (659)
T TIGR00954 513 A---------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDM-KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMD 581 (659)
T ss_pred C---------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhh-hccCCCHHHHHHHHHHcCCHHHHhhcCCccccccccc
Confidence 3 4579999999998887 999999875321100 00112245678899999987643 4
Q ss_pred CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 ~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++|||||| ||++||+.++..+.+.+++ .|+|+|++||+++ ..+.||++++|+.
T Consensus 582 ~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 582 VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 577999999 9999999999999988865 3789999999997 3588999999963
No 351
>PLN03130 ABC transporter C family member; Provisional
Probab=99.93 E-value=5.3e-26 Score=281.27 Aligned_cols=180 Identities=22% Similarity=0.402 Sum_probs=147.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|++++|+.+ .++++|+|+|+++++||.++|+||||||||||+++|.|.++|.+ .|+|.+
T Consensus 614 ~I~~~nvsf~y~~~------------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~--GG~I~l-- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK------------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS--DASVVI-- 677 (1622)
T ss_pred ceEEEeeEEEccCC------------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCC--CceEEE--
Confidence 58999999999532 23468999999999999999999999999999999999998852 178863
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc---------------
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA--------------- 200 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~--------------- 200 (627)
++.|+||+|++.++.. ||+|||.|+.. ..+++.+++++..+|++..
T Consensus 678 ---------~~~Iayv~Q~p~Lfng-TIreNI~fg~~---------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G 738 (1622)
T PLN03130 678 ---------RGTVAYVPQVSWIFNA-TVRDNILFGSP---------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERG 738 (1622)
T ss_pred ---------cCeEEEEcCccccCCC-CHHHHHhCCCc---------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCC
Confidence 5579999999999976 99999998731 1245667777777764321
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHH-HHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIE-LLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~-~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
..++|||||| |||+||+.+.+++++ .++.+. .|+|+|++||+++ ..+.||+|++|++
T Consensus 739 ~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~--~l~~aD~Ii~L~~ 814 (1622)
T PLN03130 739 VNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLH--FLSQVDRIILVHE 814 (1622)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHh--HHHhCCEEEEEeC
Confidence 2356999999 999999999998875 556553 4799999999996 4678999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+.+++.
T Consensus 815 G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 815 GMIKEEGTYEELS 827 (1622)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999998875
No 352
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.93 E-value=1e-25 Score=209.84 Aligned_cols=144 Identities=26% Similarity=0.321 Sum_probs=109.6
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
++++|++++|. +..+|+|+||++++||+++|+||||||||||+++|+|+++|.. |+|.++|+
T Consensus 1 l~~~~l~~~~~---------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~~~ 62 (144)
T cd03221 1 IELENLSKTYG---------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE---GIVTWGST 62 (144)
T ss_pred CEEEEEEEEEC---------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCe
Confidence 47899999993 2359999999999999999999999999999999999998864 99999873
Q ss_pred cCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCC
Q 006897 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLD 216 (627)
Q Consensus 137 ~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD 216 (627)
+.++|++| + +..+ .+++.=+...+. + .+-++- ..|++|||
T Consensus 63 ---------~~i~~~~~-------l-----------------S~G~-~~rv~laral~~-~--p~illl---DEP~~~LD 102 (144)
T cd03221 63 ---------VKIGYFEQ-------L-----------------SGGE-KMRLALAKLLLE-N--PNLLLL---DEPTNHLD 102 (144)
T ss_pred ---------EEEEEEcc-------C-----------------CHHH-HHHHHHHHHHhc-C--CCEEEE---eCCccCCC
Confidence 46999999 1 1111 111111111110 0 001111 22999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
+.++..+.+.|+++ ++|+|++||+++ ++.++||++++|++|+
T Consensus 103 ~~~~~~l~~~l~~~----~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 103 LESIEALEEALKEY----PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHHHc----CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999876 469999999998 5788999999999986
No 353
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.5e-25 Score=254.55 Aligned_cols=185 Identities=21% Similarity=0.291 Sum_probs=142.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+||||+|++||++||+||||||||||||+|+|+++|++ |+|.++|
T Consensus 1 ~i~i~nls~~~g---------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~---G~I~~~~ 62 (638)
T PRK10636 1 MIVFSSLQIRRG---------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG---GSYTFPG 62 (638)
T ss_pred CEEEEEEEEEeC---------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecC
Confidence 488999999993 3469999999999999999999999999999999999998864 9999987
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHH-----------------------Hhc--CCCCCHHHHHHHHHHH
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA-----------------------NFR--LKGMSHKEKEDRVESL 190 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~-----------------------~~~--~~~~~~~~~~~~v~~~ 190 (627)
.. .++|++|+...+. .|+.+.+.-.. .+. .......+.++++.++
T Consensus 63 ~~---------~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (638)
T PRK10636 63 NW---------QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132 (638)
T ss_pred CC---------EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 42 3788888643332 46555443110 000 0000111235678999
Q ss_pred HHHcCCc-ccc----CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccH
Q 006897 191 MDELGLT-HVA----GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSY 247 (627)
Q Consensus 191 l~~lgL~-~~~----~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~ 247 (627)
|+.+|+. +.. ..++|||+|| ||++||+.+...+.+.|+++ +.|||+||||+..
T Consensus 133 L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~ 208 (638)
T PRK10636 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDF 208 (638)
T ss_pred HHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 9999996 333 4567999999 99999999999999998764 4699999999984
Q ss_pred HHHHHhhhheeecCCeEE-eeCCHHHH
Q 006897 248 RILQYISKFLILSRGSVV-HYGSLELL 273 (627)
Q Consensus 248 ~i~~~~D~i~vL~~G~iv-~~G~~~~~ 273 (627)
+.++||++++|++|++. +.|+.+..
T Consensus 209 -l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 209 -LDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred -HHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 88999999999999996 56776543
No 354
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=1.3e-25 Score=215.73 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=113.3
Q ss_pred EeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC
Q 006897 60 RNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139 (627)
Q Consensus 60 ~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~ 139 (627)
.||+++|+ ++.+++|+ +++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++
T Consensus 4 ~~l~~~~~---------------~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~-- 62 (177)
T cd03222 4 PDCVKRYG---------------VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG---DNDEWDGIT-- 62 (177)
T ss_pred CCeEEEEC---------------CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---cEEEECCEE--
Confidence 57888883 34688885 9999999999999999999999999999999864 999998853
Q ss_pred ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHH
Q 006897 140 KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTS 219 (627)
Q Consensus 140 ~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~ 219 (627)
++|++|+.. ++ ..+ ++++.-+...+. + .+-++- ..||++||+.+
T Consensus 63 --------i~~~~q~~~----LS-----------------gGq-~qrv~laral~~-~--p~lllL---DEPts~LD~~~ 106 (177)
T cd03222 63 --------PVYKPQYID----LS-----------------GGE-LQRVAIAAALLR-N--ATFYLF---DEPSAYLDIEQ 106 (177)
T ss_pred --------EEEEcccCC----CC-----------------HHH-HHHHHHHHHHhc-C--CCEEEE---ECCcccCCHHH
Confidence 789999754 11 111 111111111110 0 011111 22999999999
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee--CCHH
Q 006897 220 ALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY--GSLE 271 (627)
Q Consensus 220 ~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~--G~~~ 271 (627)
+..+.+.+++++++.+.|||++||+++ ++.++||++++|+++-.++. |.|.
T Consensus 107 ~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 107 RLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999997654489999999998 47889999999998765544 5544
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.93 E-value=4.4e-25 Score=252.91 Aligned_cols=186 Identities=22% Similarity=0.307 Sum_probs=141.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+||||+|++||++||+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~i~~ls~~~~---------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~---G~I~~~~ 64 (635)
T PRK11147 3 LISIHGAWLSFS---------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD---GRIIYEQ 64 (635)
T ss_pred EEEEeeEEEEeC---------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEeCC
Confidence 699999999993 3469999999999999999999999999999999999998864 9999876
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHH------------------------------HHHHhc--CCCCCHHHH
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLM------------------------------FSANFR--LKGMSHKEK 183 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~------------------------------~~~~~~--~~~~~~~~~ 183 (627)
.. .++|++|++......+|.+++. ....+. .......+.
T Consensus 65 ~~---------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 135 (635)
T PRK11147 65 DL---------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQL 135 (635)
T ss_pred CC---------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccH
Confidence 32 2566776543222235555432 111000 000011123
Q ss_pred HHHHHHHHHHcCCcc--ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcc
Q 006897 184 EDRVESLMDELGLTH--VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIH 243 (627)
Q Consensus 184 ~~~v~~~l~~lgL~~--~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH 243 (627)
++++.++++.+|+.. ....++|||+|| ||++||+.++..+.+.|+++ +.|||+|||
T Consensus 136 ~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsH 211 (635)
T PRK11147 136 ENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISH 211 (635)
T ss_pred HHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeC
Confidence 567899999999952 345677999999 99999999999999999876 249999999
Q ss_pred CccHHHHHHhhhheeecCCeEE-eeCCHHHH
Q 006897 244 QPSYRILQYISKFLILSRGSVV-HYGSLELL 273 (627)
Q Consensus 244 ~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 273 (627)
|+.. +.++||++++|++|+++ +.|+.++.
T Consensus 212 d~~~-l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 212 DRSF-IRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred CHHH-HHHhcCeEEEEECCEEEEecCCHHHH
Confidence 9984 88899999999999997 46876543
No 356
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=1.8e-25 Score=264.11 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=163.0
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...|+++|++.+|.++ ...||+||||+|+|||.+||+|..|||||||+++|-++..|.+ |+|.|
T Consensus 1136 ~G~I~f~~~~~RYrp~-------------lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~---G~I~I 1199 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPN-------------LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE---GEILI 1199 (1381)
T ss_pred CCeEEEEEeEEEeCCC-------------CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC---CeEEE
Confidence 3479999999999643 2369999999999999999999999999999999999998854 99999
Q ss_pred CCccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC-------
Q 006897 134 NCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV------- 204 (627)
Q Consensus 134 ~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~------- 204 (627)
||.|+.+ ..++|++++.+||||.+|.+ |||.||.=. .+-.++++.++|+..+|.+...++.
T Consensus 1200 DgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf---------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v 1269 (1381)
T KOG0054|consen 1200 DGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPF---------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEV 1269 (1381)
T ss_pred cCeecccccHHHHHhcCeeeCCCCceecC-ccccccCcc---------cccCHHHHHHHHHHhChHHHHhhCCcCCCcee
Confidence 9999854 47899999999999999998 999998521 1234567899999988875443222
Q ss_pred --------CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 205 --------GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 205 --------gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
-||||. .|+++|+.+-..|-+.||+-- .++|||.+.|+++. +.+ +|||+|
T Consensus 1270 ~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~T-Vmd-~DrVlV 1345 (1381)
T KOG0054|consen 1270 SEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHRLNT-VMD-SDRVLV 1345 (1381)
T ss_pred cCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeeccch-hhh-cCeEEE
Confidence 356664 899999999999999999864 47999999999994 654 899999
Q ss_pred ecCCeEEeeCCHHHHHHH
Q 006897 259 LSRGSVVHYGSLELLEET 276 (627)
Q Consensus 259 L~~G~iv~~G~~~~~~~~ 276 (627)
|++|++++.|+|+++.+.
T Consensus 1346 ld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1346 LDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred eeCCeEeecCChHHHHhC
Confidence 999999999999988753
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=3.4e-25 Score=274.21 Aligned_cols=184 Identities=22% Similarity=0.382 Sum_probs=144.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|+++.|+. ..+++|+|+||++++||+++|+||||||||||+++|+|+++|.+ |+|.++|
T Consensus 636 ~i~~~~~~~~~~~-------------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g 699 (1522)
T TIGR00957 636 SITVHNATFTWAR-------------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE---GHVHMKG 699 (1522)
T ss_pred cEEEEEeEEEcCC-------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC---cEEEECC
Confidence 5999999999942 12459999999999999999999999999999999999999864 9999876
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHHHcCC-----c----cccCCc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVES---LMDELGL-----T----HVAGSF 203 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL-----~----~~~~~~ 203 (627)
.+|||+|++.+++ .||+||+.++.. .++++. +++.+ +.+.++. + +....+
T Consensus 700 -----------~i~yv~Q~~~l~~-~Ti~eNI~~g~~-----~~~~~~-~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~L 761 (1522)
T TIGR00957 700 -----------SVAYVPQQAWIQN-DSLRENILFGKA-----LNEKYY-QQVLEACALLPDLEILPSGDRTEIGEKGVNL 761 (1522)
T ss_pred -----------EEEEEcCCccccC-CcHHHHhhcCCc-----cCHHHH-HHHHHHhCCHHHHHhcCCCCCceecCCCCCC
Confidence 4899999998876 599999998632 122221 22211 1222222 1 223456
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHH-HcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMA-KAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~-~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
+|||||| |||+||+.+++.+++.+.+.. ...|+|+|++||+++. .+.||+|++|++|++
T Consensus 762 SGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i 839 (1522)
T TIGR00957 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKI 839 (1522)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeE
Confidence 7999999 999999999999999997531 1247899999999973 456999999999999
Q ss_pred EeeCCHHHHHH
Q 006897 265 VHYGSLELLEE 275 (627)
Q Consensus 265 v~~G~~~~~~~ 275 (627)
++.|+.+++.+
T Consensus 840 ~~~g~~~~l~~ 850 (1522)
T TIGR00957 840 SEMGSYQELLQ 850 (1522)
T ss_pred EeeCCHHHHHh
Confidence 99999988753
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.5e-25 Score=207.13 Aligned_cols=154 Identities=33% Similarity=0.521 Sum_probs=116.7
Q ss_pred EEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 59 VRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 59 ~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
++|+++.|. ++.+++++|+++++||+++|+||||||||||+++|+|++++.. |+|+++|.++
T Consensus 2 ~~~~~~~~~---------------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~---G~i~~~~~~~ 63 (157)
T cd00267 2 IENLSFRYG---------------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGKDI 63 (157)
T ss_pred eEEEEEEeC---------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEc
Confidence 688999883 2359999999999999999999999999999999999998854 9999999875
Q ss_pred CC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCC
Q 006897 139 KK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLD 216 (627)
Q Consensus 139 ~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD 216 (627)
.. ..+.++.++|++| ++- .+ ++++. +...+-.+ .+-.+- ..||+|||
T Consensus 64 ~~~~~~~~~~~i~~~~q-------lS~-----------------G~-~~r~~-l~~~l~~~--~~i~il---DEp~~~lD 112 (157)
T cd00267 64 AKLPLEELRRRIGYVPQ-------LSG-----------------GQ-RQRVA-LARALLLN--PDLLLL---DEPTSGLD 112 (157)
T ss_pred ccCCHHHHHhceEEEee-------CCH-----------------HH-HHHHH-HHHHHhcC--CCEEEE---eCCCcCCC
Confidence 32 3456678999999 111 11 11111 11111111 011111 23999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
+.++..+.+.++++.++ ++|++++||+++ ++..+||++++|++|+
T Consensus 113 ~~~~~~l~~~l~~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 113 PASRERLLELLRELAEE-GRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 99999999999998764 789999999998 4788899999999875
No 359
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.91 E-value=1.4e-24 Score=199.82 Aligned_cols=187 Identities=22% Similarity=0.337 Sum_probs=158.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++++||+..- -|-.+|.++..||+.-+||||||||||||-.++|+++. +|+|.++|
T Consensus 3 l~qln~v~~~t-------------------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G 59 (248)
T COG4138 3 LMQLNDVAEST-------------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAG 59 (248)
T ss_pred eeeeccccccc-------------------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECC
Confidence 56788877543 37889999999999999999999999999999999865 29999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----CCcCCcccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----GSFVGDEEN 209 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~q 209 (627)
+++.. ..++.++-+|+.|+..-...|.|...+.+. . +.++....++++...++|++.. ++++|||-|
T Consensus 60 ~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~----q---P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQ 132 (248)
T COG4138 60 QPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH----Q---PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQ 132 (248)
T ss_pred cchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc----C---chHHHHHHHHHHHhhhcccchhhhhhhhcCcccce
Confidence 99632 356778889999986555568899988763 1 4466777899999999998765 456799998
Q ss_pred C-------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 210 R-------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 210 r-------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
| |.++||...+..+-.+|.++++ .|.+|||++||++- ..+.+|++.+|++|++
T Consensus 133 RVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDLNh-TLrhA~~~wLL~rG~l 210 (248)
T COG4138 133 RVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDLNH-TLRHAHRAWLLKRGKL 210 (248)
T ss_pred eeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEeccchhh-HHHHHHHHHHHhcCeE
Confidence 8 8899999999999999999987 59999999999994 7899999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
...|..+|+.
T Consensus 211 ~~~G~~~eVl 220 (248)
T COG4138 211 LASGRREEVL 220 (248)
T ss_pred Eeecchhhhc
Confidence 9999998874
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.91 E-value=2.1e-24 Score=266.38 Aligned_cols=167 Identities=24% Similarity=0.413 Sum_probs=133.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
+++|+|+||+|++||+++|+|||||||||||++|+|+++|.+ |+|.++| .++||+|++.+++. ||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~---G~i~~~g-----------~iayv~Q~~~l~~~-Ti 503 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSG-----------RISFSPQTSWIMPG-TI 503 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC-----------EEEEEeCCCccCCc-cH
Confidence 468999999999999999999999999999999999999864 9999887 38999999999985 99
Q ss_pred HHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHcCC------ccccCCcCCccccC------------------CCCC
Q 006897 164 KETLMFSANFRLKGMSHKEKED-----RVESLMDELGL------THVAGSFVGDEENR------------------GISG 214 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL------~~~~~~~~gGe~qr------------------Ptsg 214 (627)
+||+.|+... ..+..++ .+++.++.+.. .+....++|||||| |+++
T Consensus 504 ~eNI~~g~~~-----~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 504 KDNIIFGLSY-----DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred HHHHHhcccc-----chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999987421 1111111 11222332221 12234677999999 9999
Q ss_pred CCHHHHHHHHHH-HHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 215 LDSTSALQVIEL-LASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 215 LD~~~~~~i~~~-L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
||+.++.++++. ++++. .|+|+|++||+++. + +.||++++|++|++++.|+.+++.
T Consensus 579 LD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLM--SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred CCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999985 66664 38999999999973 4 569999999999999999998875
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-24 Score=202.00 Aligned_cols=168 Identities=23% Similarity=0.344 Sum_probs=140.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++.+||+..- ++..++.++||++.+||++-|.||||||||||||+|+|+.+|++ |+|.++|
T Consensus 2 ~L~a~~L~~~R---------------~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~---G~v~~~~ 63 (209)
T COG4133 2 MLEAENLSCER---------------GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQG 63 (209)
T ss_pred cchhhhhhhcc---------------CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCC---CeEEecC
Confidence 46677877654 34579999999999999999999999999999999999999975 9999999
Q ss_pred ccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccccC
Q 006897 136 HQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEENR 210 (627)
Q Consensus 136 ~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~qr 210 (627)
+++.. .+..++.+-|+-.++.+=+.+||.|||.|....... ...+.+.++++.+||....|.. +.|||+|
T Consensus 64 ~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~-----~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRR 138 (209)
T COG4133 64 EPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS-----GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRR 138 (209)
T ss_pred CCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC-----CchhhHHHHHHHcCcccccccchhhcchhHHHH
Confidence 88754 344677888888888888999999999998655421 2345689999999998777654 4788887
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccH
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSY 247 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~ 247 (627)
|+++||......+-.++..-+.+ |-.||.+||++-.
T Consensus 139 vAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~-GGiVllttHq~l~ 192 (209)
T COG4133 139 VALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ-GGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcC-CCEEEEecCCccC
Confidence 99999999999999999988764 6689999999863
No 362
>PRK13409 putative ATPase RIL; Provisional
Probab=99.91 E-value=1.2e-24 Score=245.81 Aligned_cols=161 Identities=19% Similarity=0.282 Sum_probs=130.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE-----------ECCccCCCh-hh---hcccE
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT-----------VNCHQIKKP-AQ---LRKIC 148 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~-----------i~g~~~~~~-~~---~r~~i 148 (627)
..+|++++ .+++||++||+||||||||||+|+|+|+++|+. |+|. ++|+++.+. .. .+..+
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL---GDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC---ccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 35899999 999999999999999999999999999999974 9997 888875321 11 12346
Q ss_pred EEEccCCCCCCC---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-----------
Q 006897 149 GFVAQEDNLLPL---LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR----------- 210 (627)
Q Consensus 149 g~v~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr----------- 210 (627)
++.+|.....|. .||+|++... +.+++++++++.+||++..+ .++|||+||
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~-----------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKV-----------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhh-----------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 666665433332 3999998631 23457899999999976555 456999999
Q ss_pred -------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 211 -------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 211 -------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
||++||+.++..+.+.|+++++ |+|||++|||++ ++..+||++++|+++
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999964 899999999998 588999999999763
No 363
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=5.5e-24 Score=251.62 Aligned_cols=181 Identities=28% Similarity=0.467 Sum_probs=150.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++|.+++.+.. +..+.|+||||+|++|+.+||+||-|||||+||.+|.|.++..+ |++.++
T Consensus 517 ~~i~i~~~sfsW~~~------------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~s---G~v~v~ 581 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE------------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLS---GSVAVN 581 (1381)
T ss_pred ceEEEeeeeEecCCC------------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccccc---ceEEEc
Confidence 368999999998532 23348999999999999999999999999999999999998754 999988
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC-------------
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG------------- 201 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------------- 201 (627)
|. ++||+|++.++.. ||+|||.|+..+ .+++-+++++...|++..+
T Consensus 582 gs-----------iaYv~Q~pWI~ng-TvreNILFG~~~---------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGEr 640 (1381)
T KOG0054|consen 582 GS-----------VAYVPQQPWIQNG-TVRENILFGSPY---------DEERYDKVIKACALKKDLEILPFGDLTEIGER 640 (1381)
T ss_pred Ce-----------EEEeccccHhhCC-cHHHhhhcCccc---------cHHHHHHHHHHccCHhHHhhcCCCCcceecCC
Confidence 73 8999999999976 999999998422 2456667777777754221
Q ss_pred --CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 202 --SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 202 --~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.++|||||| |+|++|++..+++.+..-+..- .++|+|++||+++ ..+.||+|++|++
T Consensus 641 GinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~--~L~~ad~Iivl~~ 717 (1381)
T KOG0054|consen 641 GINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQ--FLPHADQIIVLKD 717 (1381)
T ss_pred ccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchh--hhhhCCEEEEecC
Confidence 345999999 9999999999999865554332 4799999999986 5788999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|+|.+.|+.+|+.
T Consensus 718 G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 718 GKIVESGTYEELL 730 (1381)
T ss_pred CeEecccCHHHHH
Confidence 9999999999887
No 364
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=1.6e-23 Score=201.05 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=105.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
.+++|+|+||++++||+++|+||||||||||||+|.+ + .|++.++|.. . ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~-~--~~~~~~~~~~~q--------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFL-P--KFSRNKLIFIDQ--------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcc-c--ccccccEEEEhH---------
Confidence 4579999999999999999999999999999999963 2 3999998763 1 112345888887
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCCccccC--------------------CCCCCCH
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVGDEENR--------------------GISGLDS 217 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~gGe~qr--------------------PtsgLD~ 217 (627)
.++++.++|.. ....++|||+|| |+++||+
T Consensus 68 -------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 -------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred -------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 12344455432 223455777766 9999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 218 TSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 218 ~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
.++..+.+.|+++++ .|+|||++||+++. + +.||++++|++|+.
T Consensus 123 ~~~~~l~~~l~~~~~-~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 123 QDINQLLEVIKGLID-LGNTVILIEHNLDV-L-SSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-H-HhCCEEEEECCCCC
Confidence 999999999999975 58999999999973 4 68999999976544
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.8e-23 Score=189.60 Aligned_cols=191 Identities=24% Similarity=0.374 Sum_probs=155.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|.++|++|+|.-.. +.+-..++++|+||+++.||++++-||||||||||||+|.|-+.|++ |+|.+.-
T Consensus 4 ~l~v~~~~KtFtlH~--------q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~---G~I~v~H 72 (235)
T COG4778 4 PLNVSNVSKTFTLHQ--------QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVRH 72 (235)
T ss_pred eeeeecchhheEeee--------cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCC---ceEEEEe
Confidence 589999999996432 22234579999999999999999999999999999999999999975 9998853
Q ss_pred cc--C--C--Chh---hh-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-----
Q 006897 136 HQ--I--K--KPA---QL-RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----- 200 (627)
Q Consensus 136 ~~--~--~--~~~---~~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----- 200 (627)
.. + . .+. +. |+.||||.|.-...|..+..|-++-++.. .+.+.+..++++.++|.++++.+..
T Consensus 73 ~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~--~gv~~~~a~~~a~~Ll~rLnlperLW~LaP 150 (235)
T COG4778 73 EGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA--RGVPREVARAKAADLLTRLNLPERLWSLAP 150 (235)
T ss_pred CcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH--cCCCHHHHHHHHHHHHHHcCCCHHHhcCCC
Confidence 32 1 1 121 23 45699999998888888888888876533 3567888899999999999997643
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.+.+|||+|| ||+.||..++..++++|++-+ ..|.++|=+-||-+. -...|||++-+..
T Consensus 151 aTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K-a~GaAlvGIFHDeev-re~vadR~~~~~~ 227 (235)
T COG4778 151 ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK-ARGAALVGIFHDEEV-REAVADRLLDVSA 227 (235)
T ss_pred cccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH-hcCceEEEeeccHHH-HHHHhhheeeccc
Confidence 4566999999 999999999999999999874 579999999999763 4668999998764
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=99.89 E-value=1.3e-23 Score=241.68 Aligned_cols=198 Identities=20% Similarity=0.197 Sum_probs=138.7
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++|++++|+ .+.+|+|+||+|++||++||+||||||||||||+|+|+........|+|.+
T Consensus 175 ~~~I~i~nls~~y~---------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~ 239 (718)
T PLN03073 175 IKDIHMENFSISVG---------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILH 239 (718)
T ss_pred ceeEEEceEEEEeC---------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEE
Confidence 34799999999993 245999999999999999999999999999999999964110112388875
Q ss_pred CCccCC----Ch------------hhhcccEEEEccCCCCCCCCCHHHHHHH-----------------HHHhcCCCCCH
Q 006897 134 NCHQIK----KP------------AQLRKICGFVAQEDNLLPLLTVKETLMF-----------------SANFRLKGMSH 180 (627)
Q Consensus 134 ~g~~~~----~~------------~~~r~~ig~v~Q~~~l~~~lTV~e~l~~-----------------~~~~~~~~~~~ 180 (627)
.++.+. .. ..+++.+++++|++.+... ++.++... ... +......
T Consensus 240 ~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~ 317 (718)
T PLN03073 240 VEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYK-RLELIDA 317 (718)
T ss_pred EeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHH-HHHhcCc
Confidence 443310 00 0123446778876443221 11111110 000 0000011
Q ss_pred HHHHHHHHHHHHHcCCc-c----ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCE
Q 006897 181 KEKEDRVESLMDELGLT-H----VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRT 237 (627)
Q Consensus 181 ~~~~~~v~~~l~~lgL~-~----~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~T 237 (627)
.+.++++.++|+.+|+. + ...+++|||+|| ||++||+.++..+.+.|+++ +.|
T Consensus 318 ~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~t 393 (718)
T PLN03073 318 YTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKT 393 (718)
T ss_pred chHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCE
Confidence 13456788888999985 2 235677999999 99999999999999999875 579
Q ss_pred EEEEccCccHHHHHHhhhheeecCCeEE-eeCCHHHH
Q 006897 238 VVLSIHQPSYRILQYISKFLILSRGSVV-HYGSLELL 273 (627)
Q Consensus 238 ii~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 273 (627)
||++|||.+ .+.++||++++|++|++. +.|+.++.
T Consensus 394 viivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999998 488899999999999996 67776543
No 367
>PTZ00243 ABC transporter; Provisional
Probab=99.89 E-value=2.7e-23 Score=256.90 Aligned_cols=169 Identities=23% Similarity=0.321 Sum_probs=132.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|.+. +.+||++|++.+++ .|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~---G~i~~~-----------~~i~yv~Q~~~l~~-~T 736 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE---GRVWAE-----------RSIAYVPQQAWIMN-AT 736 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEEC-----------CeEEEEeCCCccCC-Cc
Confidence 3569999999999999999999999999999999999999864 998752 46999999998875 59
Q ss_pred HHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHHHc--CCcc----ccCCcCCccccC------------------CCC
Q 006897 163 VKETLMFSANFRLKGMSHKEKE-----DRVESLMDEL--GLTH----VAGSFVGDEENR------------------GIS 213 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~----~~~~~~gGe~qr------------------Pts 213 (627)
|+||+.++... ..+... ..+++.++.+ |++. ....++|||||| ||+
T Consensus 737 v~enI~~~~~~-----~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~s 811 (1560)
T PTZ00243 737 VRGNILFFDEE-----DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLS 811 (1560)
T ss_pred HHHHHHcCChh-----hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 99999985211 111111 1233444554 5532 334577999999 999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHH
Q 006897 214 GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLE 274 (627)
Q Consensus 214 gLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 274 (627)
+||+.++..+++.+..... .|+|+|++||+++. .+.||+|++|++|++++.|+.+++.
T Consensus 812 aLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 812 ALDAHVGERVVEECFLGAL-AGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred cCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999875432222 48999999999973 4789999999999999999998874
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=8.1e-23 Score=225.69 Aligned_cols=186 Identities=25% Similarity=0.309 Sum_probs=149.5
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++|++++| +.+.+++|+|+++.+|+.+||||+||||||||||+|+|...|+. |+|...
T Consensus 2 ~~i~~~~ls~~~---------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~---G~i~~~ 63 (530)
T COG0488 2 SMITLENLSLAY---------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS---GEVTRP 63 (530)
T ss_pred ceEEEeeeEEee---------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCC---CeEeec
Confidence 379999999999 34579999999999999999999999999999999999998864 999764
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC------C----------------------CCHHHHHHH
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK------G----------------------MSHKEKEDR 186 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~------~----------------------~~~~~~~~~ 186 (627)
+. .++||++|++.+.+..||.|.+.-+..-... . ...-+.+.+
T Consensus 64 ~~---------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~ 134 (530)
T COG0488 64 KG---------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR 134 (530)
T ss_pred CC---------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHH
Confidence 31 2489999999999888999988765311000 0 000012356
Q ss_pred HHHHHHHcCCccc---cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCc
Q 006897 187 VESLMDELGLTHV---AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245 (627)
Q Consensus 187 v~~~l~~lgL~~~---~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~ 245 (627)
+..+|..+|+.+. ...++||||.| ||+.||..+..-+-+.|++. .| |+|+||||-
T Consensus 135 ~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR 210 (530)
T COG0488 135 AEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDR 210 (530)
T ss_pred HHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCH
Confidence 7788888888764 34566999988 99999999999999999864 46 999999998
Q ss_pred cHHHHHHhhhheeecCCeEE-eeCCHHH
Q 006897 246 SYRILQYISKFLILSRGSVV-HYGSLEL 272 (627)
Q Consensus 246 ~~~i~~~~D~i~vL~~G~iv-~~G~~~~ 272 (627)
.. +-++|++|+-+++|++. |.|..+.
T Consensus 211 ~F-Ld~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 211 YF-LDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred HH-HHHHhhheEEecCCceeEecCCHHH
Confidence 86 88999999999999875 5666543
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.87 E-value=9.3e-22 Score=217.27 Aligned_cols=185 Identities=25% Similarity=0.364 Sum_probs=149.7
Q ss_pred CCcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE
Q 006897 52 KTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI 131 (627)
Q Consensus 52 ~~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i 131 (627)
.+...++++|+++.|++ .+.+++++||.|.+|+.+||+||||+|||||||+|+|...|. +|+|
T Consensus 317 ~g~~vl~~~~~~~~y~~--------------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v 379 (530)
T COG0488 317 LGKLVLEFENVSKGYDG--------------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTV 379 (530)
T ss_pred CCCeeEEEeccccccCC--------------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceE
Confidence 34558999999999942 257999999999999999999999999999999999999886 3988
Q ss_pred EECCccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCC
Q 006897 132 TVNCHQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVG 205 (627)
Q Consensus 132 ~i~g~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~g 205 (627)
.+.- .-++||..|+. .+.+..|+.|++.-.. ....+..+...|..+++.. ....++|
T Consensus 380 ~~g~---------~v~igyf~Q~~~~l~~~~t~~d~l~~~~--------~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSG 442 (530)
T COG0488 380 KVGE---------TVKIGYFDQHRDELDPDKTVLEELSEGF--------PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSG 442 (530)
T ss_pred EeCC---------ceEEEEEEehhhhcCccCcHHHHHHhhC--------ccccHHHHHHHHHHcCCChHHHhCchhhcCH
Confidence 7632 13489999985 4557789999987532 1111567899999999863 3356779
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
|||.| ||+.||..+...+.+.|.+. .-|||+||||... +.++|++++.+.+ ++...
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~F-l~~va~~i~~~~~-~~~~~ 516 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYF-LDRVATRIWLVED-KVEEF 516 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHH-HHhhcceEEEEcC-ceeEc
Confidence 99988 99999999999999999876 3499999999986 8999999999998 65544
Q ss_pred -CCHHHHHHH
Q 006897 268 -GSLELLEET 276 (627)
Q Consensus 268 -G~~~~~~~~ 276 (627)
|..++..+.
T Consensus 517 ~g~y~~y~~~ 526 (530)
T COG0488 517 EGGYEDYLEQ 526 (530)
T ss_pred CCCHHHHHHh
Confidence 776665443
No 370
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.87 E-value=1.4e-23 Score=206.31 Aligned_cols=208 Identities=24% Similarity=0.428 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHHH-HHHhhHHHhh
Q 006897 344 YEIMVLCSRFWKIIYRTKQLF-LARTMQALVGGFGLGSVYVRVRKDEAGVAERLGLFAFSLSFLLSSTV-EALPIYLQER 421 (627)
Q Consensus 344 ~q~~~l~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~~-~~i~~~~~er 421 (627)
+|++.+++|+++..+|||.+. ..+++..++.++++|.+|.++++++++. ++.|++++.+.+.++... +.......||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999998544455 778877777776664433 3336788999
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 006897 422 RVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPD 501 (627)
Q Consensus 422 ~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~ 501 (627)
..+.||+.++.|++..|++|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..+++.++|.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999988 77888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHh
Q 006897 502 FISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEY 554 (627)
Q Consensus 502 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef 554 (627)
...+..+.+++..+++++||.++|.+.+|+|++|+.|+||++|+.|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999886
No 371
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.87 E-value=4e-22 Score=204.18 Aligned_cols=180 Identities=19% Similarity=0.327 Sum_probs=145.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|+.|.|.+.. --+..||++|++||++-|+|.||||||||+++|.|+.+|++ |+|.+||
T Consensus 322 ~lelrnvrfay~~~~--------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pqs---G~I~ldg 384 (546)
T COG4615 322 TLELRNVRFAYQDNA--------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDG 384 (546)
T ss_pred ceeeeeeeeccCccc--------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCC---CceeECC
Confidence 699999999995431 24789999999999999999999999999999999999975 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc---C------CcC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA---G------SFV 204 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~---~------~~~ 204 (627)
+++.. .+++|+-++-||-|.++|+.+--.|+ +...+.++..|+++.|.+.. | +++
T Consensus 385 ~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~--------------~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLS 450 (546)
T COG4615 385 KPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG--------------KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLS 450 (546)
T ss_pred ccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc--------------CCChHHHHHHHHHHHHhhhhcccCCcccccccc
Confidence 99743 46788888888988888875211111 12345577778887775432 2 345
Q ss_pred CccccC-----------C-------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 205 GDEENR-----------G-------ISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 205 gGe~qr-----------P-------tsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
.|||+| | -+.-||.-++.+.+.+.-+-+++|+||+.+|||-. -+..+||++.+++|++++
T Consensus 451 tGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 451 TGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRNGQLSE 528 (546)
T ss_pred cchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhcCceee
Confidence 899988 3 26789999999998888877889999999999976 488999999999999987
Q ss_pred eC
Q 006897 267 YG 268 (627)
Q Consensus 267 ~G 268 (627)
.-
T Consensus 529 ~t 530 (546)
T COG4615 529 LT 530 (546)
T ss_pred cc
Confidence 54
No 372
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.86 E-value=2.8e-21 Score=193.74 Aligned_cols=170 Identities=22% Similarity=0.285 Sum_probs=113.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCCccceEEEC----------CccCCCh--hhhc-ccE
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLL-RIISGRVRDQDFDPRSITVN----------CHQIKKP--AQLR-KIC 148 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl-~~L~Gl~~~~~~~~G~i~i~----------g~~~~~~--~~~r-~~i 148 (627)
+.++|+||||++++||++||+||||||||||+ ..+... |++.+. ...+..+ .+.+ ...
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAE--------GQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHH--------HHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 45699999999999999999999999999996 444310 221110 0000001 1122 234
Q ss_pred EEEccCC--CCCCCCCHHH---HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-ccC----CcCCccccC--------
Q 006897 149 GFVAQED--NLLPLLTVKE---TLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VAG----SFVGDEENR-------- 210 (627)
Q Consensus 149 g~v~Q~~--~l~~~lTV~e---~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~----~~~gGe~qr-------- 210 (627)
++..|++ .+.+..+|.. ...+...+. ......++ .+.++.+||.+ ..+ .++|||+||
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHH
Confidence 4545543 2344446543 222211111 12222333 56899999875 233 456999988
Q ss_pred ------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeC
Q 006897 211 ------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYG 268 (627)
Q Consensus 211 ------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G 268 (627)
||+|||+.++..+.+.|+++++ .|.|+|++|||++ ++ ++||++++| ++|+|+++|
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 7999999999999999999975 5899999999997 34 699999999 999999876
No 373
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=198.36 Aligned_cols=203 Identities=23% Similarity=0.317 Sum_probs=168.7
Q ss_pred CCcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE
Q 006897 52 KTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI 131 (627)
Q Consensus 52 ~~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i 131 (627)
++...|+++||+..-. .+...++||||++++||++||.|-.|-|-+.|+.+|+|+.++.. |+|
T Consensus 253 pg~~vL~V~~L~v~~~--------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~---G~I 315 (501)
T COG3845 253 PGEVVLEVEDLSVKDR--------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRI 315 (501)
T ss_pred CCCeEEEEeeeEeecC--------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC---ceE
Confidence 3456899999998542 22457999999999999999999999999999999999997753 999
Q ss_pred EECCccCC---Chhh-hcccEEEEccCC---CCCCCCCHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHcCCcc-
Q 006897 132 TVNCHQIK---KPAQ-LRKICGFVAQED---NLLPLLTVKETLMFSANF-----RLKGMSHKEKEDRVESLMDELGLTH- 198 (627)
Q Consensus 132 ~i~g~~~~---~~~~-~r~~ig~v~Q~~---~l~~~lTV~e~l~~~~~~-----~~~~~~~~~~~~~v~~~l~~lgL~~- 198 (627)
.++|+++. ++.+ .+..+||||.|. .+.+.+|+.||+.+...- +..-....+.++.+.++++++++..
T Consensus 316 ~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~ 395 (501)
T COG3845 316 LLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAP 395 (501)
T ss_pred EECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCC
Confidence 99999862 2333 446799999985 477889999999987532 1111356778888999999998852
Q ss_pred ----ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhh
Q 006897 199 ----VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKF 256 (627)
Q Consensus 199 ----~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i 256 (627)
.+..++||.+|+ ||-|||..+.+.+.+.|.+.++ .|+.|+++|-|++ |+..+||||
T Consensus 396 ~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS~dLD-Eil~lsDrI 473 (501)
T COG3845 396 SPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLLISEDLD-EILELSDRI 473 (501)
T ss_pred CCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEEEehhHH-HHHHhhhee
Confidence 356778999887 9999999999999999999976 5999999999999 699999999
Q ss_pred eeecCCeEEeeCCHHHH
Q 006897 257 LILSRGSVVHYGSLELL 273 (627)
Q Consensus 257 ~vL~~G~iv~~G~~~~~ 273 (627)
.+|.+|+++...++++.
T Consensus 474 aVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 474 AVIYEGRIVGIVPPEEA 490 (501)
T ss_pred eeeeCCceecccccccC
Confidence 99999999988777653
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.1e-20 Score=203.95 Aligned_cols=194 Identities=19% Similarity=0.361 Sum_probs=160.5
Q ss_pred CcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE
Q 006897 53 TTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132 (627)
Q Consensus 53 ~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~ 132 (627)
+.+.++++|++..- .++|+||++++||+++|.|-=|||+|-|+++|.|..++. .|+|.
T Consensus 260 ~~~~l~v~~l~~~~-------------------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~ 317 (500)
T COG1129 260 GEPVLEVRNLSGGG-------------------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEIL 317 (500)
T ss_pred CCcEEEEecCCCCC-------------------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEE
Confidence 34578999987531 489999999999999999999999999999999977664 39999
Q ss_pred ECCccCC--Ch-hhhcccEEEEccC---CCCCCCCCHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHcCCcc-----
Q 006897 133 VNCHQIK--KP-AQLRKICGFVAQE---DNLLPLLTVKETLMFSANFRLK---GMSHKEKEDRVESLMDELGLTH----- 198 (627)
Q Consensus 133 i~g~~~~--~~-~~~r~~ig~v~Q~---~~l~~~lTV~e~l~~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~----- 198 (627)
++|+++. ++ ..++..++|||.| ..++..++|++|+.++...+.. -.+....++.+++..+.+++..
T Consensus 318 l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~ 397 (500)
T COG1129 318 LDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ 397 (500)
T ss_pred ECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc
Confidence 9999863 23 4567889999987 4688899999999987321211 1355556677899999998853
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
....++||-||+ ||.|+|.-++.+|.+++++++++ |++||++|-+++ |+..+||||+||+
T Consensus 398 ~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElp-Ell~~~DRIlVm~ 475 (500)
T COG1129 398 PIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELP-ELLGLSDRILVMR 475 (500)
T ss_pred hhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChH-HHHhhCCEEEEEE
Confidence 345677998887 99999999999999999999975 999999999998 7999999999999
Q ss_pred CCeEEeeCCH
Q 006897 261 RGSVVHYGSL 270 (627)
Q Consensus 261 ~G~iv~~G~~ 270 (627)
+|+++..-+.
T Consensus 476 ~Gri~~e~~~ 485 (500)
T COG1129 476 EGRIVGELDR 485 (500)
T ss_pred CCEEEEEecc
Confidence 9999875433
No 375
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=3.1e-20 Score=188.81 Aligned_cols=176 Identities=25% Similarity=0.333 Sum_probs=131.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCC-----CCCC---C-----ccceEEECCccCCC-----
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS-----GRV-----RDQD---F-----DPRSITVNCHQIKK----- 140 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~-----Gl~-----~~~~---~-----~~G~i~i~g~~~~~----- 140 (627)
.+-|+|||++|+.|++++|.|+||||||||++.+. ..+ .|.. . -.--|.++..++..
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34699999999999999999999999999998652 110 0110 0 01236677666521
Q ss_pred h-------hhhcc----------------cEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc
Q 006897 141 P-------AQLRK----------------ICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197 (627)
Q Consensus 141 ~-------~~~r~----------------~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 197 (627)
+ .++|+ .+.|..++...+..+||.|++.|...+. ..+++.++|+.+||.
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~--------~~~~~~~~L~~vgL~ 159 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP--------KIARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh--------hHHHHHHHHHHcCCc
Confidence 1 11111 2556666666667899999999875321 134677899999997
Q ss_pred cc-c----CCcCCccccC---------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHH
Q 006897 198 HV-A----GSFVGDEENR---------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ 251 (627)
Q Consensus 198 ~~-~----~~~~gGe~qr---------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~ 251 (627)
.. . .+++|||+|| ||+|||+..+..+.+.|+++.+ .|.|||+++|+++. + +
T Consensus 160 ~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~~-i-~ 236 (261)
T cd03271 160 YIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLDV-I-K 236 (261)
T ss_pred hhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-H-H
Confidence 62 3 4566999988 8999999999999999999975 58999999999973 4 6
Q ss_pred Hhhhheee------cCCeEEeeCCH
Q 006897 252 YISKFLIL------SRGSVVHYGSL 270 (627)
Q Consensus 252 ~~D~i~vL------~~G~iv~~G~~ 270 (627)
.||+++.| ++|++++.|++
T Consensus 237 ~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 237 CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 79999999 89999999874
No 376
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=1.1e-19 Score=172.00 Aligned_cols=208 Identities=22% Similarity=0.314 Sum_probs=156.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccceEEEC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ-DFDPRSITVN 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~-~~~~G~i~i~ 134 (627)
.+.++||+..+... .+..++++++|+++.+||+-+++|+||||||-..|+|+|..+.. ..+.....++
T Consensus 3 LLDIrnL~IE~~Ts-----------qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~ 71 (330)
T COG4170 3 LLDIRNLTIEFKTS-----------QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFD 71 (330)
T ss_pred cccccceEEEEecC-----------CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccc
Confidence 47889999988543 35677999999999999999999999999999999999998753 1122334455
Q ss_pred CccCC--Chhhhc----ccEEEEccCCC--CCCCCCHHHHHHHHHHhc-CCCCC---HHHHHHHHHHHHHHcCCccccC-
Q 006897 135 CHQIK--KPAQLR----KICGFVAQEDN--LLPLLTVKETLMFSANFR-LKGMS---HKEKEDRVESLMDELGLTHVAG- 201 (627)
Q Consensus 135 g~~~~--~~~~~r----~~ig~v~Q~~~--l~~~lTV~e~l~~~~~~~-~~~~~---~~~~~~~v~~~l~~lgL~~~~~- 201 (627)
+.++. .+++.| +.|+++||++. +.|.-+|...|--..... .++.- -.-+++++-++|.++|+.+..|
T Consensus 72 ~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI 151 (330)
T COG4170 72 DIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI 151 (330)
T ss_pred cchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHH
Confidence 55542 233333 45789999974 667666655554321100 01100 0124577889999999986544
Q ss_pred ------CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 202 ------SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 202 ------~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
.+.-||-|+ ||+.+||.++.++.++|.++.+.+|+||++++||+.. +.+.||++-
T Consensus 152 M~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~ 230 (330)
T COG4170 152 MRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKIN 230 (330)
T ss_pred HHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheE
Confidence 223566655 9999999999999999999998899999999999995 999999999
Q ss_pred eecCCeEEeeCCHHHHHH
Q 006897 258 ILSRGSVVHYGSLELLEE 275 (627)
Q Consensus 258 vL~~G~iv~~G~~~~~~~ 275 (627)
||.-|+-++.++.+++.+
T Consensus 231 VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 231 VLYCGQTVESAPSEELVT 248 (330)
T ss_pred EEEecccccccchhHHhc
Confidence 999999999999988764
No 377
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.80 E-value=3.6e-20 Score=181.66 Aligned_cols=149 Identities=15% Similarity=0.230 Sum_probs=110.2
Q ss_pred e-eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC------CccceEEECCccCCChhhhcccEEEEccCCCCCC
Q 006897 87 L-KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD------FDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLP 159 (627)
Q Consensus 87 L-~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~------~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~ 159 (627)
+ +++++++++| +++|+||||||||||+++|+|++++.. ...|++.++|++... ...++.+++|||++..+
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK-PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC-CCceEEEEEEEEcCCCc-
Confidence 5 7899999999 999999999999999999999986541 123567777776422 23457899999998765
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC-ccccCCcCCccccC----------------------CCCCCC
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL-THVAGSFVGDEENR----------------------GISGLD 216 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~~gGe~qr----------------------PtsgLD 216 (627)
|+. . ..++++++++.-++ +.....++|||+|| |++|||
T Consensus 89 ---------~~~--~--------~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD 149 (197)
T cd03278 89 ---------YSI--I--------SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALD 149 (197)
T ss_pred ---------eeE--E--------ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCC
Confidence 110 0 02345555555222 12234556777765 999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
+..+..+.+.|+++++ +.|||++||+++. .+.||+++.+..
T Consensus 150 ~~~~~~l~~~l~~~~~--~~tiIiitH~~~~--~~~~d~v~~~~~ 190 (197)
T cd03278 150 DANVERFARLLKEFSK--ETQFIVITHRKGT--MEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHHHHhcc--CCEEEEEECCHHH--HhhcceEEEEEe
Confidence 9999999999999853 6899999999973 578999999864
No 378
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.78 E-value=1.5e-19 Score=166.51 Aligned_cols=98 Identities=40% Similarity=0.703 Sum_probs=84.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCCCCCCCCCHH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
|+|||+++++||+++|+||||||||||+++|+|..+|. .|+|.++|+++.. ....++.++|++|++.+++.+||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999885 3999999998754 356788999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS 202 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 202 (627)
|| ..+++++++++.+++.+..++
T Consensus 78 ~~---------------~~~~~~~~~l~~l~~~~~~~~ 100 (137)
T PF00005_consen 78 EN---------------ESDERIEEVLKKLGLEDLLDR 100 (137)
T ss_dssp HH---------------HHHHHHHHHHHHTTHGGGTGS
T ss_pred cc---------------ccccccccccccccccccccc
Confidence 99 224557888888887664443
No 379
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.75 E-value=1.7e-18 Score=175.43 Aligned_cols=168 Identities=15% Similarity=0.205 Sum_probs=110.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC----------------CCCCCC---ccc--eEEECCccC----
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR----------------VRDQDF---DPR--SITVNCHQI---- 138 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl----------------~~~~~~---~~G--~i~i~g~~~---- 138 (627)
+.++++++ |++++|+||||||||||+++|+++ +.++.. ..+ ++.+++.+-
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 45788887 789999999999999999999843 333210 001 455555321
Q ss_pred C-ChhhhcccEEEEccCCCCCC-CCCHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHcC-CccccCCcCCccccC---
Q 006897 139 K-KPAQLRKICGFVAQEDNLLP-LLTVKETLMFSANFRLKGMSHK--EKEDRVESLMDELG-LTHVAGSFVGDEENR--- 210 (627)
Q Consensus 139 ~-~~~~~r~~ig~v~Q~~~l~~-~lTV~e~l~~~~~~~~~~~~~~--~~~~~v~~~l~~lg-L~~~~~~~~gGe~qr--- 210 (627)
. ....+++.+++++|+..+++ ..|..|...+............ ....++.++++..+ .+.....++|||+||
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~l 169 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVAL 169 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHH
Confidence 1 12346678999999888776 3577666655443321110000 01223333333221 123345667888876
Q ss_pred -------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 -------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 -------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
||+|||+.++..+++.|+++++ ++|+|+++|+++ +.++||++++|.
T Consensus 170 a~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~--~~~~~d~i~~l~ 234 (243)
T cd03272 170 ALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPE--LLEVADKFYGVK 234 (243)
T ss_pred HHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH--HHhhCCEEEEEE
Confidence 8999999999999999999853 788999999864 689999999985
No 380
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.75 E-value=7e-18 Score=185.77 Aligned_cols=170 Identities=26% Similarity=0.369 Sum_probs=137.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+..-+. .+..|++.++++++||.+.|.||||||||||+|+|+|+.+-.+ |+|..-
T Consensus 391 ~~i~~~nl~l~~p~--------------~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~---G~I~~P 453 (604)
T COG4178 391 HGITLENLSLRTPD--------------GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS---GRISMP 453 (604)
T ss_pred ceeEEeeeeEECCC--------------CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC---CceecC
Confidence 47999999987642 2378999999999999999999999999999999999998643 776532
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----------CcC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----------SFV 204 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----------~~~ 204 (627)
-...+-|+||.|.+... |.+|.|.|+... .+-.++.+.++|.++||+++.+ .++
T Consensus 454 ---------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~------~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS 517 (604)
T COG4178 454 ---------ADSALLFLPQRPYLPQG-TLREALCYPNAA------PDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLS 517 (604)
T ss_pred ---------CCCceEEecCCCCCCCc-cHHHHHhCCCCC------CCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcC
Confidence 12347899999998776 999999986321 1134567889999999987653 345
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
+||||| .|++||+.++..+.+++++-. .+.|||-|.|++. +..+.++.+-+.+
T Consensus 518 ~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~t--l~~~h~~~l~l~~ 588 (604)
T COG4178 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPT--LWNFHSRQLELLD 588 (604)
T ss_pred hhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchh--hHHHHhhheeecc
Confidence 999999 689999999999999998743 5799999999986 5778887666543
No 381
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.74 E-value=5.1e-19 Score=180.33 Aligned_cols=158 Identities=13% Similarity=0.195 Sum_probs=116.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc-cCCCh----hhhcccEEEEccCC---------CCCCCCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH-QIKKP----AQLRKICGFVAQED---------NLLPLLT 162 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~-~~~~~----~~~r~~ig~v~Q~~---------~l~~~lT 162 (627)
..+++|+||||||||||+++|++++.+.. .|++...+. ++... ...+..+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~--~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITN--LSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccc--cccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 44999999999999999999999987642 267777665 32111 12245799999985 3456789
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--------------------c----ccCCcCCccccC--------
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--------------------H----VAGSFVGDEENR-------- 210 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~----~~~~~~gGe~qr-------- 210 (627)
|.+++..+...+..-..++...+++.++|+.+|+. + ....++|||+||
T Consensus 103 V~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 103 VTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 99988764321110001233457899999999986 1 223456888876
Q ss_pred --------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 --------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 --------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
||++||+..+..+.+.|+++. .|.|+|++||+. ++.+.||+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 999999999999999999984 378999999995 4788899998765
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.74 E-value=2.6e-18 Score=169.53 Aligned_cols=149 Identities=13% Similarity=0.276 Sum_probs=108.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCCccceEEECCccCCChhhhcccEEEEccCC-----CCCC
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIIS----GRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQED-----NLLP 159 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~----Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~-----~l~~ 159 (627)
..++++.+| +++|+||||||||||+++|. |...++. |.+. ...+.......+..+++++|++ ....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~---~~~~-~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r 89 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNS---KGGA-HDPKLIREGEVRAQVKLAFENANGKKYTITR 89 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccc---cccc-chHHHHhCCCCcEEEEEEEEeCCCCEEEEEE
Confidence 344667788 99999999999999999995 8877643 4443 1112112233456799999987 3445
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC------------------------CCCCC
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR------------------------GISGL 215 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr------------------------PtsgL 215 (627)
.+|+.||+.+. +..+ +++.+ +.....+++||+|| |+++|
T Consensus 90 ~~~~~~~~~~~--------~~~~----~~~~~-----~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~L 152 (204)
T cd03240 90 SLAILENVIFC--------HQGE----SNWPL-----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNL 152 (204)
T ss_pred EhhHhhceeee--------chHH----HHHHH-----hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcccc
Confidence 56889998653 1122 23333 33445677888872 99999
Q ss_pred CHHHHH-HHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 216 DSTSAL-QVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 216 D~~~~~-~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
|+..+. .+.+.|++++++.|.|||++||+++ ..+.||+++.|.+
T Consensus 153 D~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 153 DEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred CHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 999999 9999999997654789999999986 4578999999965
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.73 E-value=1.1e-17 Score=178.31 Aligned_cols=187 Identities=23% Similarity=0.315 Sum_probs=143.9
Q ss_pred CcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE
Q 006897 53 TTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132 (627)
Q Consensus 53 ~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~ 132 (627)
+++.+.++|++|.|.++ ..++++++|-|+.++.+|+|||||+|||||||++.|.+.|.. |.+.
T Consensus 386 p~pvi~~~nv~F~y~~~--------------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~---G~vs 448 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDN--------------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI---GMVS 448 (614)
T ss_pred CCCeEEEeccccCCCCc--------------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccc---cccc
Confidence 35579999999999532 258999999999999999999999999999999999999964 8775
Q ss_pred ECCccCCChhhhcccEEEEccC--CCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-----CCcCC
Q 006897 133 VNCHQIKKPAQLRKICGFVAQE--DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA-----GSFVG 205 (627)
Q Consensus 133 i~g~~~~~~~~~r~~ig~v~Q~--~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----~~~~g 205 (627)
-.- ..++++--|+ ..+.-..++.|++.-.. +.+...+.+..+|.++||+... .++++
T Consensus 449 ~~~---------H~~~~~y~Qh~~e~ldl~~s~le~~~~~~-------~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~ 512 (614)
T KOG0927|consen 449 RHS---------HNKLPRYNQHLAEQLDLDKSSLEFMMPKF-------PDEKELEEMRSILGRFGLTGDAQVVPMSQLSD 512 (614)
T ss_pred ccc---------cccchhhhhhhHhhcCcchhHHHHHHHhc-------cccchHHHHHHHHHHhCCCccccccchhhccc
Confidence 332 2234455554 23444567877775321 1233456789999999998443 34568
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE-Ee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV-VH 266 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i-v~ 266 (627)
|||.| ||+|||..+...+.+.|.+. .| +||++|||... |.++++++.+..+|.+ .+
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~G-gvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PG-GVVLVSHDFRL-ISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CC-ceeeeechhhH-HHHHHHHhHhhccCceeec
Confidence 99988 99999999999999999875 24 89999999995 9999999999998876 45
Q ss_pred eCCHHHHHHHH
Q 006897 267 YGSLELLEETI 277 (627)
Q Consensus 267 ~G~~~~~~~~~ 277 (627)
.|+.....+..
T Consensus 588 ~G~i~~yk~~l 598 (614)
T KOG0927|consen 588 DGDIEIYKEHL 598 (614)
T ss_pred CccHHHHHHHH
Confidence 67766554443
No 384
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.73 E-value=8.4e-17 Score=152.31 Aligned_cols=194 Identities=19% Similarity=0.276 Sum_probs=143.0
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...|+++++.|+|+.. .+++-|+|++++.|....++|.||||||||||+|+|-.-.. .|.|.+
T Consensus 11 ~~aievsgl~f~y~~~--------------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~V 73 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--------------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQV 73 (291)
T ss_pred cceEEEeccEEecccC--------------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEE
Confidence 3469999999999532 36899999999999999999999999999999999976543 289999
Q ss_pred CCccCCCh-------------hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--c
Q 006897 134 NCHQIKKP-------------AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--H 198 (627)
Q Consensus 134 ~g~~~~~~-------------~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~ 198 (627)
+|++.... .++.+.++.-- +-.+-..+++.+.| |+. .+.. .+ |-+++++.++++ =
T Consensus 74 lgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV----~g~d-p~---Rre~LI~iLDIdl~W 143 (291)
T KOG2355|consen 74 LGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGV----GGDD-PE---RREKLIDILDIDLRW 143 (291)
T ss_pred cCcCccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhc----cCCC-hh---HhhhhhhheeccceE
Confidence 99875221 12333333322 22223356775544 432 2222 23 344555656554 3
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++.+.|||+| -|-.||..++.++++.+++-+++.|.||+..||-.+- ++....+++.|+
T Consensus 144 RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~ 222 (291)
T KOG2355|consen 144 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIK 222 (291)
T ss_pred EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEec
Confidence 446677899988 3568999999999999999999999999999999985 889999999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|+++..-+.+.+.+
T Consensus 223 ~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 223 SGKLVDNLKYQKIKE 237 (291)
T ss_pred CCeeeeccccchhhh
Confidence 999987555544443
No 385
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.73 E-value=4.6e-17 Score=198.14 Aligned_cols=115 Identities=21% Similarity=0.210 Sum_probs=91.5
Q ss_pred CCCCCCHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCccc-c----CCcCCccccC--------------------
Q 006897 157 LLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGLTHV-A----GSFVGDEENR-------------------- 210 (627)
Q Consensus 157 l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~-~----~~~~gGe~qr-------------------- 210 (627)
.+...||.|+|.++..-.. .....++..+++ ++|+.+||.+. . .+++|||+||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD 837 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD 837 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 4567899999988754211 111234556666 58899999765 3 3456999988
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec------CCeEEeeCCHHHHHH
Q 006897 211 -GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS------RGSVVHYGSLELLEE 275 (627)
Q Consensus 211 -PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 275 (627)
||+|||+.++..+++.|+++++ .|.|||+++|+++. + +.||++++|. +|++++.|+++++..
T Consensus 838 EPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 838 EPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9999999999999999999975 58999999999983 5 8999999996 789999999988753
No 386
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.72 E-value=1.4e-19 Score=179.42 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=114.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++|.. +| +.+.+++++++ ++++|+||||||||||+++|.-. +|
T Consensus 5 ~l~l~nfk-~~---------------~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G 50 (212)
T cd03274 5 KLVLENFK-SY---------------AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FG 50 (212)
T ss_pred EEEEECcc-cC---------------CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hc
Confidence 46777765 56 23468999987 89999999999999999999722 22
Q ss_pred ccCCChhhhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhc------CCCCCHHHHHH--HHHHHHHHcCCccccCC----
Q 006897 136 HQIKKPAQLR-KICGFVAQEDNLLPLLTVKETLMFSANFR------LKGMSHKEKED--RVESLMDELGLTHVAGS---- 202 (627)
Q Consensus 136 ~~~~~~~~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~------~~~~~~~~~~~--~v~~~l~~lgL~~~~~~---- 202 (627)
.+. ...+ +++++++|+..+++.+|+++++.+..... ..+...++... ...++++.++|.+..++
T Consensus 51 ~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~ 127 (212)
T cd03274 51 FRA---SKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISN 127 (212)
T ss_pred cCH---HHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhh
Confidence 221 1222 46889999888888888888876643221 01111111110 12455566677654443
Q ss_pred cCCccccC----------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 203 FVGDEENR----------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 203 ~~gGe~qr----------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
+++||+|| ||+|||+.++..+.+.|++++ .+.|+|++||++ ++.++|||+++|.
T Consensus 128 lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~--~~~~~iivs~~~--~~~~~~d~v~~~~ 203 (212)
T cd03274 128 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT--KNAQFIVISLRN--NMFELADRLVGIY 203 (212)
T ss_pred cCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECcH--HHHHhCCEEEEEE
Confidence 34676654 899999999999999999985 357899999996 4789999999996
Q ss_pred C
Q 006897 261 R 261 (627)
Q Consensus 261 ~ 261 (627)
.
T Consensus 204 ~ 204 (212)
T cd03274 204 K 204 (212)
T ss_pred e
Confidence 4
No 387
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.71 E-value=9.1e-17 Score=188.10 Aligned_cols=104 Identities=26% Similarity=0.356 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-----cCCcCCccccC---------------------CCCC
Q 006897 161 LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-----AGSFVGDEENR---------------------GISG 214 (627)
Q Consensus 161 lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr---------------------Ptsg 214 (627)
+||.|++.|...+. . ..+..+.|+.+||... ..+++|||+|| ||+|
T Consensus 792 ltv~E~l~~f~~~~-------~-i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsG 863 (943)
T PRK00349 792 MTVEEALEFFEAIP-------K-IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG 863 (943)
T ss_pred CcHHHHHHHHHhch-------h-hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence 78999988865321 1 1234678999999752 34567999988 8899
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHHH
Q 006897 215 LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLEE 275 (627)
Q Consensus 215 LD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 275 (627)
||+..+..+++.|+++.+ .|.|||+++|+++. + +.||+++.| ++|++++.|+++++.+
T Consensus 864 LD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 864 LHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999999999999975 58999999999973 4 689999999 6899999999988753
No 388
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.70 E-value=4.8e-17 Score=161.69 Aligned_cols=167 Identities=17% Similarity=0.239 Sum_probs=106.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEAR-DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~-~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.|+++|.. +|.. -++++|+.. +|++++|+||||||||||+++|++.+-.. ..+....+
T Consensus 5 ~i~l~nf~-~y~~------------------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~ 63 (213)
T cd03279 5 KLELKNFG-PFRE------------------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQE 63 (213)
T ss_pred EEEEECCc-CcCC------------------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccch
Confidence 47888887 6521 156667644 59999999999999999999999654211 11222222
Q ss_pred -CccCCChhhhcccEEEEccCCCC------CCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc----cCCc
Q 006897 135 -CHQIKKPAQLRKICGFVAQEDNL------LPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV----AGSF 203 (627)
Q Consensus 135 -g~~~~~~~~~r~~ig~v~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~----~~~~ 203 (627)
..+.......+..+++++|+... ++.++..+.... + .++..++++. ...+
T Consensus 64 ~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~-----------------~--~l~~g~l~~~l~~~~~~l 124 (213)
T cd03279 64 NLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRI-----------------V--LLPQGEFDRFLARPVSTL 124 (213)
T ss_pred hHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHh-----------------h--hhhhcchHHHhcCCcccc
Confidence 11111223345679999998643 222333322211 0 0111112111 1223
Q ss_pred CCccccC----------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhh
Q 006897 204 VGDEENR----------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISK 255 (627)
Q Consensus 204 ~gGe~qr----------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~ 255 (627)
+|||+|| |+++||+.++..+.+.|+++++ .|.|||++||+++ .+...+|+
T Consensus 125 S~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~~-~~~~~~~~ 202 (213)
T cd03279 125 SGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVEE-LKERIPQR 202 (213)
T ss_pred CHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECchH-HHHhhCcE
Confidence 3444332 8899999999999999999975 4889999999998 47889999
Q ss_pred heeecCCeE
Q 006897 256 FLILSRGSV 264 (627)
Q Consensus 256 i~vL~~G~i 264 (627)
++++++|..
T Consensus 203 i~~~~~~~~ 211 (213)
T cd03279 203 LEVIKTPGG 211 (213)
T ss_pred EEEEecCCC
Confidence 999998853
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=1.1e-15 Score=178.66 Aligned_cols=103 Identities=24% Similarity=0.332 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-----cCCcCCccccC---------------------CCC
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-----AGSFVGDEENR---------------------GIS 213 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr---------------------Pts 213 (627)
.|||.|.+.|...+. . ..+..++|+.+||... ..+++|||+|| ||+
T Consensus 789 ~~tv~e~~~f~~~~~--~------i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPts 860 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP--S------ISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTT 860 (924)
T ss_pred CCcHHHHHHHHHhcc--c------hhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCC
Confidence 467777777754321 1 1235678899999752 35567999988 999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHH
Q 006897 214 GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELL 273 (627)
Q Consensus 214 gLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~ 273 (627)
|||+..+..+++.|+++.+ .|.|||+++|+++. + +.||++++| ++|++++.|+++++
T Consensus 861 gLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 861 GLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999975 58999999999973 4 679999999 79999999998764
No 390
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.65 E-value=8e-16 Score=165.25 Aligned_cols=178 Identities=17% Similarity=0.231 Sum_probs=137.1
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
+..|++++|+..-++ .+..+++|+||+|++|+-+.|.||||||||+|+|+|+|+.+..+ |.+.-
T Consensus 431 Dn~i~~e~v~l~tPt-------------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~---G~l~k 494 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPT-------------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTG---GKLTK 494 (659)
T ss_pred cceEEeeeeeecCCC-------------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCC---CeEEe
Confidence 357999999987632 24468899999999999999999999999999999999998643 88864
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
-.+. --+.+-||||.|.+--+ |.||.+.|+...- ....+...++++.+.|+.++|.++
T Consensus 495 ~~~~------~~~~lfflPQrPYmt~G-TLRdQvIYP~~~~-~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~d 566 (659)
T KOG0060|consen 495 PTDG------GPKDLFFLPQRPYMTLG-TLRDQVIYPLKAE-DMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWD 566 (659)
T ss_pred cccC------CCCceEEecCCCCcccc-chhheeeccCccc-cccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhcc
Confidence 3322 11458899999987666 9999999974211 111222345677888888877653
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.+.+++||+|| -||++|......+.+.+++ .|+|.|-|.|+.+ +.++-|.++-|+
T Consensus 567 W~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRkS--L~kfHd~~L~~~ 640 (659)
T KOG0060|consen 567 WMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRKS--LWKFHDYVLRMD 640 (659)
T ss_pred HHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHHH--HHhhhhEEEEec
Confidence 34567999999 5899999888888877765 5899999999987 577778888887
Q ss_pred C
Q 006897 261 R 261 (627)
Q Consensus 261 ~ 261 (627)
.
T Consensus 641 g 641 (659)
T KOG0060|consen 641 G 641 (659)
T ss_pred C
Confidence 5
No 391
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.1e-15 Score=155.11 Aligned_cols=180 Identities=19% Similarity=0.302 Sum_probs=135.1
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
++.|-+.||+|.|+ +.++++++++|-|.--..+||+||||.||||||++|.|-+.|.. |+..
T Consensus 584 PPvLGlH~VtFgy~--------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~---GE~R- 645 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP--------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND---GELR- 645 (807)
T ss_pred CCeeecccccccCC--------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc---chhh-
Confidence 34799999999995 34578999999999999999999999999999999999999874 6543
Q ss_pred CCccCCChhhhcccEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC-----cCCc
Q 006897 134 NCHQIKKPAQLRKICGFVAQED--NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS-----FVGD 206 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----~~gG 206 (627)
+..|-+||+.-|+. .|-..-|..|.|.-.. ..+. +.+...|-.+||...+++ ++||
T Consensus 646 --------KnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F-----Nlpy----q~ARK~LG~fGL~sHAHTikikdLSGG 708 (807)
T KOG0066|consen 646 --------KNHRLRIGWFDQHANEALNGEETPVEYLQRKF-----NLPY----QEARKQLGTFGLASHAHTIKIKDLSGG 708 (807)
T ss_pred --------ccceeeeechhhhhHHhhccccCHHHHHHHhc-----CCCh----HHHHHHhhhhhhhhccceEeeeecCCc
Confidence 22345699988873 4555567777775322 2232 345677888999876654 4699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe-e
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH-Y 267 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~-~ 267 (627)
|+-| ||++||..+...+-+.|.+. .-.|||+|||-.. +.+.-..++|+.+-.|-+ .
T Consensus 709 QKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eId 783 (807)
T KOG0066|consen 709 QKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERL-IVETDCNLWVVENQGIDEID 783 (807)
T ss_pred chHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccce-eeecCceEEEEccCChhhcc
Confidence 9987 99999999999999999876 3379999999874 555444667776644432 4
Q ss_pred CCHHHH
Q 006897 268 GSLELL 273 (627)
Q Consensus 268 G~~~~~ 273 (627)
|.-++.
T Consensus 784 GdFeDY 789 (807)
T KOG0066|consen 784 GDFEDY 789 (807)
T ss_pred ccHHHH
Confidence 555544
No 392
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.59 E-value=2.2e-15 Score=147.94 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=96.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHH
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
.+++|++++. |++++|+||||||||||+|+|+|...- ...|.++.. -.+++|.+.+++.+|+.
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a-------~~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA-------SSFELPPVKIFTSIRVS 77 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec-------CccCcccceEEEeccch
Confidence 4788887775 799999999999999999999876531 123333211 13667877889999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHH-HHHHHHHHcCCCEEEEEcc
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVI-ELLASMAKAKQRTVVLSIH 243 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~-~~L~~l~~~~g~Tii~~tH 243 (627)
||+.++... ...+. +++.++++.+++.+ ..-++- ..|++|+|+..+..+. .+++++.+ .|.|+|++||
T Consensus 78 d~l~~~~s~-----~~~e~-~~~~~iL~~~~~~~-p~llll---DEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH 146 (199)
T cd03283 78 DDLRDGISY-----FYAEL-RRLKEIVEKAKKGE-PVLFLL---DEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTH 146 (199)
T ss_pred hccccccCh-----HHHHH-HHHHHHHHhccCCC-CeEEEE---ecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcC
Confidence 999875311 12333 67899999888510 000001 2299999999998775 46888865 5899999999
Q ss_pred CccH
Q 006897 244 QPSY 247 (627)
Q Consensus 244 ~~~~ 247 (627)
+++.
T Consensus 147 ~~~~ 150 (199)
T cd03283 147 DLEL 150 (199)
T ss_pred cHHH
Confidence 9873
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.58 E-value=1.1e-14 Score=152.58 Aligned_cols=168 Identities=17% Similarity=0.219 Sum_probs=126.1
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..+++.++++.|++ --|+-=..+|..||+++++||||-||||+.++|+|.++|++ |+
T Consensus 341 ~lv~y~~~~k~~g~----------------F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPde---g~---- 397 (591)
T COG1245 341 TLVEYPDLKKTYGD----------------FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDE---GS---- 397 (591)
T ss_pred eeeecchheeecCc----------------eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCC---CC----
Confidence 35667777777631 13555567788889999999999999999999999999975 54
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr 210 (627)
.. .-+++|=||--.--...||.+.|.-....... ..---.++++-+.|++..+ .++|||.||
T Consensus 398 ~~--------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~------~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQR 463 (591)
T COG1245 398 EE--------DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFG------SSYFKTEIVKPLNLEDLLERPVDELSGGELQR 463 (591)
T ss_pred Cc--------cceEeecceeecCCCCCcHHHHHHHhhhhhcc------cchhHHhhcCccchHHHHhcccccCCchhHHH
Confidence 11 12478889974433456999988755422110 1112345667777766554 556999999
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 ------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 ------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
|.+-||...+..+-+.|+++....++|.+++.||+-. +--++||+++.+
T Consensus 464 vaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999999999999999899999999999984 666789998885
No 394
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.57 E-value=9.7e-15 Score=155.94 Aligned_cols=197 Identities=20% Similarity=0.296 Sum_probs=125.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++|+++.|. ++.+++|++|++.+|+.+||+|+|||||||+|++|+|...|.... =.++..
T Consensus 74 ~dvk~~sls~s~~---------------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~-~d~y~l 137 (614)
T KOG0927|consen 74 RDVKIESLSLSFH---------------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEH-IDFYLL 137 (614)
T ss_pred ccceeeeeeeccC---------------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcc-cchhhh
Confidence 3589999999983 457999999999999999999999999999999999998875322 222222
Q ss_pred CccCCC-h-hhh----------cccEEEEccCCCCC-CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cc-
Q 006897 135 CHQIKK-P-AQL----------RKICGFVAQEDNLL-PLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HV- 199 (627)
Q Consensus 135 g~~~~~-~-~~~----------r~~ig~v~Q~~~l~-~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~- 199 (627)
.+++.. . ..+ ++++.|.-.+-... +. --.|.+.- ...++..+..+..+.++-++|..+|-. +.
T Consensus 138 s~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~-~~~~~l~~-~~~r~~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 138 SREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDD-KEKDELDE-LYERLDEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred cccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-hhhhHHHH-HHHHHHhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 222211 0 001 11111110000000 00 00000000 000111122334455666666666643 22
Q ss_pred ---cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 200 ---AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 200 ---~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
...++||++.| ||++||..+..-+-+.|.+.- ..++++++|.-+. +-.+|.+|+-
T Consensus 216 ~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~~~lVi~sh~QDf-ln~vCT~Ii~ 291 (614)
T KOG0927|consen 216 DKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---RIILVIVSHSQDF-LNGVCTNIIH 291 (614)
T ss_pred HHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---CceEEEEecchhh-hhhHhhhhhe
Confidence 23456999887 999999999999999998752 1289999999885 8899999999
Q ss_pred ecCCe-EEeeCCHHHH
Q 006897 259 LSRGS-VVHYGSLELL 273 (627)
Q Consensus 259 L~~G~-iv~~G~~~~~ 273 (627)
|++++ +.|.|+.++.
T Consensus 292 l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 292 LDNKKLIYYEGNYDQY 307 (614)
T ss_pred ecccceeeecCCHHHH
Confidence 99999 5677887754
No 395
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.54 E-value=1.9e-12 Score=130.58 Aligned_cols=226 Identities=12% Similarity=0.121 Sum_probs=162.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCC-CC--hhhH----HHHHHHHHHHHHHHHHHHHHHHhhHHHhhH-H
Q 006897 352 RFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRVR-KD--EAGV----AERLGLFAFSLSFLLSSTVEALPIYLQERR-V 423 (627)
Q Consensus 352 R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~-~~--~~~~----~~~~g~~ff~~~~~~~~~~~~i~~~~~er~-v 423 (627)
|+++...|||..+..-+++.++..+++|.++-+.- .+ ..+. .--.|.+.+.+...+.. ... ....||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~-~~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGI-SVIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhh-HHHHHHHhC
Confidence 67888999999999999999999999998875531 11 1111 11123333222222211 112 2223333 2
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 006897 424 LMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFI 503 (627)
Q Consensus 424 ~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~ 503 (627)
+.++....=.+...|+++|.+.+++..++..+++.++.+++.+++.. .++.+++..++..++..++|.++++..+|.+
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~--~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPS--GVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33333333446789999999999999999999999999988776543 4555555666677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCCCcccccchH
Q 006897 504 SGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSKCLLTGN 583 (627)
Q Consensus 504 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~c~~~G~ 583 (627)
.++.+.+++..+++.+||.+.|.+.+|.|++|+.+++|++|+.|++-..-. +..
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~-~~~------------------------- 209 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLA-GVS------------------------- 209 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHh-CCC-------------------------
Confidence 999999999999999999999999999999999999999999998654322 211
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 006897 584 DVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWI 616 (627)
Q Consensus 584 ~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~ 616 (627)
...+.|.++++++++.+.+.+++..
T Consensus 210 --------~~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 210 --------PTFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred --------cccchHHHHHHHHHHHHHHHHHHHH
Confidence 0123456788999998888877754
No 396
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.53 E-value=2.8e-14 Score=140.08 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=102.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc---cCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH---QIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~---~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
++++++++.+| +.+|+||||||||||+.+|...+.... . ....|. ++.....-...+.+++|+..+++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~---- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA---- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccC----
Confidence 57788888888 889999999999999999974432211 0 001121 11111112345888888876554
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-CccccCCcCCccccC----------------------CCCCCCHHHH
Q 006897 164 KETLMFSANFRLKGMSHKEKEDRVESLMDELG-LTHVAGSFVGDEENR----------------------GISGLDSTSA 220 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~gGe~qr----------------------PtsgLD~~~~ 220 (627)
| . .....+++++++++.-. .+.....+++||+|| |++|||+..+
T Consensus 83 --~-------~----~~~~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 83 --N-------P----LCVLSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred --C-------c----CCHHHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 1 0 01122355667776511 122334566888886 8999999999
Q ss_pred HHHHHHHHHHHHc--CCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 221 LQVIELLASMAKA--KQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 221 ~~i~~~L~~l~~~--~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
..+.+.|+++.++ .+.|||+++|+++ ++.++ |+|.+|..++
T Consensus 150 ~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 150 KISTDLLVKEAKKQPGRQFIFITPQDIS-GLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECCccc-ccccc-cceeEEEecC
Confidence 9999999998654 2468999999998 46654 9999998754
No 397
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.51 E-value=6.6e-15 Score=149.71 Aligned_cols=155 Identities=13% Similarity=0.178 Sum_probs=97.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc-CCC--------hhhhcccEEEEccCCCC-CCCCCHH
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ-IKK--------PAQLRKICGFVAQEDNL-LPLLTVK 164 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~-~~~--------~~~~r~~ig~v~Q~~~l-~~~lTV~ 164 (627)
.++ +++|+||||||||||+++|++.+.+.. |++...+.+ +.. .....-.+.|..|++.. .-..++.
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~---~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~ 96 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKS---SHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT 96 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCCc---ccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence 344 999999999999999999999886532 554433211 100 01122223444443221 1111222
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------------------cCCcCCccccC--------
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV--------------------------AGSFVGDEENR-------- 210 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~--------------------------~~~~~gGe~qr-------- 210 (627)
+... ..+..+ +....+.++++++.+|++.. ...++|||+||
T Consensus 97 ~~~~---~~~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~ 171 (247)
T cd03275 97 GGSS---SYRING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFA 171 (247)
T ss_pred CCce---EEEECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHH
Confidence 2110 001111 11223456788888888521 03345787765
Q ss_pred --------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 211 --------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 211 --------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
|++|||+..+..+.+.|+++++ .|.|+|++||+++ +.+.||++++|.+
T Consensus 172 ~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~~--~~~~~d~i~~~~~ 233 (247)
T cd03275 172 IHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKEE--FFSKADALVGVYR 233 (247)
T ss_pred HhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCHH--HHhhCCeEEEEEe
Confidence 8999999999999999999975 4899999999965 5789999999864
No 398
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.49 E-value=9.8e-14 Score=143.75 Aligned_cols=189 Identities=20% Similarity=0.361 Sum_probs=129.1
Q ss_pred EEEEeEEEEEccCcccc--c--------cc-ccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-
Q 006897 57 VTVRNLSYAIQPNTSIL--S--------HL-LHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ- 124 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~--~--------~~-~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~- 124 (627)
+.++|+++.+...-... + .| -........+|+|+|+++++|++++|+|+|||||||||++|+|.....
T Consensus 358 ~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ 437 (593)
T COG2401 358 IKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG 437 (593)
T ss_pred cccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhccc
Confidence 67888888874321100 0 01 112223457999999999999999999999999999999999865421
Q ss_pred ----CCccceEEECCccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc
Q 006897 125 ----DFDPRSITVNCHQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199 (627)
Q Consensus 125 ----~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 199 (627)
..++|.|.+--.. ..+.+|-+. .-|..-|+.|.+.-- .+ +-....++|+..||.+-
T Consensus 438 ee~y~p~sg~v~vp~nt---------~~a~iPge~Ep~f~~~tilehl~s~-----tG-----D~~~AveILnraGlsDA 498 (593)
T COG2401 438 EEKYRPDSGKVEVPKNT---------VSALIPGEYEPEFGEVTILEHLRSK-----TG-----DLNAAVEILNRAGLSDA 498 (593)
T ss_pred ccccCCCCCceeccccc---------hhhccCcccccccCchhHHHHHhhc-----cC-----chhHHHHHHHhhccchh
Confidence 1234666542111 234566542 223355777766421 11 12346778999999752
Q ss_pred ------cCCcCCccccC----------C--------CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hh
Q 006897 200 ------AGSFVGDEENR----------G--------ISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-IS 254 (627)
Q Consensus 200 ------~~~~~gGe~qr----------P--------tsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D 254 (627)
...++.||+.| | .+.||+.++..+.+-|.+++++.|.|++++||+++. +-.+ -|
T Consensus 499 vlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD 577 (593)
T COG2401 499 VLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPD 577 (593)
T ss_pred hhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCc
Confidence 24566888877 1 378999999999999999999999999999999974 5555 58
Q ss_pred hheeecCCeEE
Q 006897 255 KFLILSRGSVV 265 (627)
Q Consensus 255 ~i~vL~~G~iv 265 (627)
+++.+.-|+..
T Consensus 578 ~li~vgYg~v~ 588 (593)
T COG2401 578 TLILVGYGKVP 588 (593)
T ss_pred eeEEeeccccc
Confidence 88887766553
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.1e-13 Score=145.01 Aligned_cols=186 Identities=19% Similarity=0.305 Sum_probs=141.1
Q ss_pred CCcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE
Q 006897 52 KTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI 131 (627)
Q Consensus 52 ~~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i 131 (627)
..++.+++.+|++.|+.+ .. +++.+++++++.-+..+++|+||+||||++|++.|-+.|.. |.+
T Consensus 358 ~~~p~l~i~~V~f~y~p~------------~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r---gi~ 421 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPS------------EY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR---GIV 421 (582)
T ss_pred CCCCeeEEEeeeccCCCc------------ch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc---cee
Confidence 345579999999999533 22 68999999999999999999999999999999999887753 666
Q ss_pred EECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-c----cCCcCCc
Q 006897 132 TVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-V----AGSFVGD 206 (627)
Q Consensus 132 ~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~----~~~~~gG 206 (627)
.+.+ |.+++|-.|...-+-.+.|-+- .+-.+.+ ++. .++.+++-+..+||+. . ...++||
T Consensus 422 ~~~~---------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-pG~----~~ee~r~hl~~~Gl~g~la~~si~~LSGG 486 (582)
T KOG0062|consen 422 GRHP---------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF-PGK----TEEEIRRHLGSFGLSGELALQSIASLSGG 486 (582)
T ss_pred eecc---------cceecchhHhhhhHHHHHhHHH-HHHHHhC-CCC----CHHHHHHHHHhcCCCchhhhccccccCCc
Confidence 5432 5679999997543333444432 2322222 333 3455777889999973 2 2456799
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe-e
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH-Y 267 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~-~ 267 (627)
|+-| ||+.||..+-..+.+.|+.+ .| .||+||||.+. +...|+.+++.++|++.- .
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~G-GVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ie 561 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NG-GVVLVSHDEEF-ISSLCKELWVVEDGKVTPIE 561 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CC-cEEEEECcHHH-HhhcCceeEEEcCCcEEeee
Confidence 9977 99999999999999999886 23 69999999986 889999999999999865 4
Q ss_pred CCHHHH
Q 006897 268 GSLELL 273 (627)
Q Consensus 268 G~~~~~ 273 (627)
|...+-
T Consensus 562 g~~~~y 567 (582)
T KOG0062|consen 562 GGIDKY 567 (582)
T ss_pred ccHHHH
Confidence 555443
No 400
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.48 E-value=4.6e-14 Score=123.10 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=62.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCCCCCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~~l~~~l 161 (627)
+.+|+++++++++||+++|+||||||||||++++. .|++.++|.++.. ..+.++.+++++|+ ++. .
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-I 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-h
Confidence 35899999999999999999999999999999986 2889999988632 34456678888887 554 4
Q ss_pred CHHHHHHHH
Q 006897 162 TVKETLMFS 170 (627)
Q Consensus 162 TV~e~l~~~ 170 (627)
|++|||.++
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999884
No 401
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.47 E-value=1.4e-13 Score=146.28 Aligned_cols=167 Identities=19% Similarity=0.360 Sum_probs=119.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|.++|+-.--+ ....++..++|+|++|--+.|+||||||||+|.|+|.|+.+-.. |...+
T Consensus 481 gI~lenIpvItP--------------~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~---g~L~~-- 541 (728)
T KOG0064|consen 481 GIILENIPVITP--------------AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN---GLLSI-- 541 (728)
T ss_pred ceEEecCceecc--------------CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccC---Ceeec--
Confidence 578888876543 23458999999999999999999999999999999999988642 55432
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHHcCCcc-------------c
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA---NFRLKGMSHKEKEDRVESLMDELGLTH-------------V 199 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~-------------~ 199 (627)
+ -+.++-|+||.|..-. -|.+|.+-|+- .++.++.. ++..+.+|+.+.|++ .
T Consensus 542 -----P--~~~~mFYIPQRPYms~-gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dW 609 (728)
T KOG0064|consen 542 -----P--RPNNIFYIPQRPYMSG-GTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDW 609 (728)
T ss_pred -----C--CCcceEeccCCCccCc-CcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccH
Confidence 1 1234899999987663 48888887642 11112222 234566666666654 3
Q ss_pred cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 200 AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 200 ~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
.|.++|||+|| -||+..+.....+.+..+ ..|.+.|-+||+|+ +.++-..++-.
T Consensus 610 kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak----~~gi~llsithrps--lwk~h~~ll~~ 681 (728)
T KOG0064|consen 610 KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK----DAGISLLSITHRPS--LWKYHTHLLEF 681 (728)
T ss_pred HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH----hcCceEEEeecCcc--HHHHHHHHHhc
Confidence 45667999999 367766666666666654 46999999999998 57776666555
No 402
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.46 E-value=7.5e-13 Score=130.27 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=92.1
Q ss_pred eeceEEEEeCCe-EEEEECCCCCcHHHHHHHHH--------cCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCC
Q 006897 87 LKSVSFEARDSE-ILAVVGPSGTGKSSLLRIIS--------GRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNL 157 (627)
Q Consensus 87 L~~vsl~i~~Ge-~~aIiGpnGsGKSTLl~~L~--------Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l 157 (627)
.-++|+++.+|+ +++|+||||||||||||+|+ |...|.. .. ..++|..|....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~---~~---------------~~~~~~~~~~~~ 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA---EG---------------SSLPVFENIFAD 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc---cc---------------ccCcCccEEEEe
Confidence 568999999995 89999999999999999998 4433321 00 123444444222
Q ss_pred CC-CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHH-HHHHHHHHcCC
Q 006897 158 LP-LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVI-ELLASMAKAKQ 235 (627)
Q Consensus 158 ~~-~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~-~~L~~l~~~~g 235 (627)
+. ..++.+++.- .+ .+.+ +...++..+ . ...-.+-.| |++|||+..+..+. ..++++.+ .|
T Consensus 79 lg~~~~l~~~~s~--------fs-~g~~-~~~~i~~~~--~-~p~llllDE---p~~glD~~~~~~i~~~~l~~l~~-~~ 141 (200)
T cd03280 79 IGDEQSIEQSLST--------FS-SHMK-NIARILQHA--D-PDSLVLLDE---LGSGTDPVEGAALAIAILEELLE-RG 141 (200)
T ss_pred cCchhhhhcCcch--------HH-HHHH-HHHHHHHhC--C-CCcEEEEcC---CCCCCCHHHHHHHHHHHHHHHHh-cC
Confidence 11 1122222211 01 1222 223333332 1 011111233 99999999999996 46777764 58
Q ss_pred CEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 236 RTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 236 ~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
.|+|++||+. ++.++||++..|++|++.+++
T Consensus 142 ~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 142 ALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999999985 478999999999999998764
No 403
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.44 E-value=3.4e-12 Score=126.23 Aligned_cols=151 Identities=17% Similarity=0.128 Sum_probs=124.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006897 434 RISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISPDFISGNSLICTVL 513 (627)
Q Consensus 434 ~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~ 513 (627)
+.+.++++|++..++..+++.+++..+.|++.|++.. ++..+++.+++..++..+++.+++++.++...+. ..+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 4567799999999999999999999999999999875 4667777888888999999999999999775444 33445
Q ss_pred HHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCCCcccccchHHHHhhcCCCC
Q 006897 514 GAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEK 593 (627)
Q Consensus 514 ~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~~~ 593 (627)
.+.++++|.+.|.+.+|.|++|+.|++|++|+.+++-...+.+. .
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~-----------------------------------~ 178 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN-----------------------------------D 178 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-----------------------------------H
Confidence 56777899999999999999999999999999999976555321 1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006897 594 DTRWVNVGVMLAFFLFYRVLCWIILSRRAS 623 (627)
Q Consensus 594 ~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 623 (627)
...|.++++++++.+++.++++...|+|++
T Consensus 179 ~~~~~~~~~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 179 GTLWQAVAVLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 235778999999999999999888776543
No 404
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.44 E-value=6.5e-11 Score=120.84 Aligned_cols=236 Identities=14% Similarity=0.126 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHhhccCCCChhh--HHHHH--HHHHHHHHHHHHHHHHHH-hhHHH
Q 006897 346 IMVLCSRFWKIIYRT-KQLFLARTMQALVGGFGLGSVYVRVRKDEAG--VAERL--GLFAFSLSFLLSSTVEAL-PIYLQ 419 (627)
Q Consensus 346 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~--~~~~~--g~~ff~~~~~~~~~~~~i-~~~~~ 419 (627)
...+.+|+++..+|+ |..+...+++.++.-+++|..+-....+..+ ..+-. |++.+++.+... .... ..+..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~--~~~~~~~~~~ 84 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTAST--FETIYATFAR 84 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 456679999999999 9999999999999888888886543211111 11111 322222221111 1111 12222
Q ss_pred --hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006897 420 --ERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSA 497 (627)
Q Consensus 420 --er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~ 497 (627)
|+..+.|-+..-. +...+.++|++.+.-..++..++...+.++ .|..+. ......+..+++..++..++|+++++
T Consensus 85 ~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~ 161 (253)
T TIGR01291 85 MRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAA 161 (253)
T ss_pred HHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333333 788999999999887777777665555543 344443 23444445556677777899999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCCCcc
Q 006897 498 ISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSK 577 (627)
Q Consensus 498 ~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~ 577 (627)
+.++.+.+..+..+++.+++..||.+.|.+.+|.|++|+.+++|+.|+.|++-.. +.+..
T Consensus 162 ~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~-~~g~~------------------- 221 (253)
T TIGR01291 162 LAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV-MLGGP------------------- 221 (253)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH-HhCCC-------------------
Confidence 9999999999999999999999999999999999999999999999999986443 22210
Q ss_pred cccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhh
Q 006897 578 CLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRR 621 (627)
Q Consensus 578 c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~ 621 (627)
..+.|.++++++++.+++.++++..+|+|
T Consensus 222 ---------------~~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 222 ---------------GTQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01235678889999888888887776654
No 405
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.43 E-value=8.2e-13 Score=147.14 Aligned_cols=105 Identities=25% Similarity=0.352 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-----cccCCcCCccccC---------------------CCC
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-----HVAGSFVGDEENR---------------------GIS 213 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----~~~~~~~gGe~qr---------------------Pts 213 (627)
.|||.|...|.... ..-.+..+.|..+||. .-+.+++|||.|| ||+
T Consensus 783 ~MTveEA~~FF~~~--------p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTT 854 (935)
T COG0178 783 DMTVEEALEFFEAI--------PKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTT 854 (935)
T ss_pred hccHHHHHHHHhcc--------hHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCC
Confidence 46777777775421 1233445667778886 3467888999999 999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec------CCeEEeeCCHHHHHH
Q 006897 214 GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS------RGSVVHYGSLELLEE 275 (627)
Q Consensus 214 gLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 275 (627)
||-....+++++.|.+|.+ .|.|||+|.|+++ +.+.||.|+=|- .|+|++.|+|+++.+
T Consensus 855 GLH~~Di~kLl~VL~rLvd-~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 855 GLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999987 5999999999997 689999999883 579999999999865
No 406
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.41 E-value=6.9e-11 Score=119.02 Aligned_cols=222 Identities=15% Similarity=0.139 Sum_probs=145.3
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHHHHHHHHHHHHHhhHHHhhH--HHHHHhcCCCCC
Q 006897 358 YRTKQLFLARTMQALVGGFGLGSVYVRVRKDEAGVAE-RLGLFAFSLSFLLSSTVEALPIYLQERR--VLMKEASREAYR 434 (627)
Q Consensus 358 ~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~-~~g~~ff~~~~~~~~~~~~i~~~~~er~--v~~rE~~~~~Y~ 434 (627)
+|||.....-+.+.+++-++.+.+|-+.. +.+..+. ..|.+.+...+ ++....--....||. .+.|=+.. =.+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~er~~G~l~rl~~~-P~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAIS--TAFTGQAIAVARDRRYGALKRLGAT-PLP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHH--HHHHHHHHHHHHHHHhCHHHHHhcC-CCc
Confidence 68999888888888888777777775421 1122211 22222221111 111111122334443 34444433 347
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 006897 435 ISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLSAISP---DFISGNSLICT 511 (627)
Q Consensus 435 ~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~---~~~~a~~~~~~ 511 (627)
...|+++|++..++..++..+++. +++++.|++..... ...++.+.+....+.+++.+++++.+ +.+.+..+..+
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999988888777655554 55667898876443 33344455555666777777777774 44555788888
Q ss_pred HHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCCCcccccchHHHHhhcCC
Q 006897 512 VLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGL 591 (627)
Q Consensus 512 ~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~ 591 (627)
+..+++++||.+.|.+.+|.|++|+.+++|++|+.+++-.. +.+. -
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~-~~~~---------------------------------~ 201 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQA-ATVS---------------------------------V 201 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHH-HcCC---------------------------------C
Confidence 88999999999999999999999999999999999987442 2111 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 006897 592 EKDTRWVNVGVMLAFFLFYRVLCWIILS 619 (627)
Q Consensus 592 ~~~~~w~~~~il~~~~~~~~~l~~~~L~ 619 (627)
+....|.++++++++.+++..++...++
T Consensus 202 ~~~~~~~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 202 DTFGAVRDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233567888888888888777766554
No 407
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.40 E-value=1.9e-12 Score=140.73 Aligned_cols=169 Identities=18% Similarity=0.197 Sum_probs=114.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC----------hhhhcccEEEEcc
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK----------PAQLRKICGFVAQ 153 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~----------~~~~r~~ig~v~Q 153 (627)
.++++++ +.+.+|++++|+|+||+|||||+++|+|..+++. |.|.+.|++-.+ ...+++.+.++.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~---gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL---NVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe---EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 4689999 9999999999999999999999999999988753 888886544211 1235678999976
Q ss_pred CCCC--C------CCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHH
Q 006897 154 EDNL--L------PLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVI 224 (627)
Q Consensus 154 ~~~l--~------~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~ 224 (627)
.+.- . -.+|+.|.++- ..... ---+.-.+..++..++++. -||. -.++|+||.....+.
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~----~g~~Vll~~Dsltr~A~A~rEisl~-------~ge~-P~~~G~dp~~~~~l~ 289 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRD----QGLNVMLMMDSVTRVAMAQREIGLA-------VGEP-PTTKGYTPSVFAILP 289 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH----CCCcEEEEEeChHHHHHHHHHHHHh-------cCCC-CccccCCHHHHHHHH
Confidence 4321 1 11222222221 00000 0000112233333333331 1221 136899999999999
Q ss_pred HHHHHHHH-cCCC-----EEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 225 ELLASMAK-AKQR-----TVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 225 ~~L~~l~~-~~g~-----Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
++++++.+ +.|. ||++.+||++ + .+||++..+.+|+++.+++..
T Consensus 290 ~ller~~~~~~GsIT~~~TVlv~~hdm~-e--~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 290 KLLERTGTNASGSITAFYTVLVDGDDMN-E--PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred HHHHHhcCCCCCCeeeEEEEEEECCCCC-c--hhhhhEEEecCEEEEEeccHH
Confidence 99999874 3575 9999999998 3 789999999999999998765
No 408
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.40 E-value=2.1e-10 Score=117.12 Aligned_cols=235 Identities=13% Similarity=0.131 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccC-CC------Ch--h-hHHHHHHHHHHHHHHHHHHHHH
Q 006897 343 LYEIMVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVRV-RK------DE--A-GVAERLGLFAFSLSFLLSSTVE 412 (627)
Q Consensus 343 ~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~-~~------~~--~-~~~~~~g~~ff~~~~~~~~~~~ 412 (627)
+++++.+++|+++...|||..+..-+++.++.-+++|.+|-.. +. +. + ...--.|++.+.+.+.. +.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~---~~ 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNG---MQ 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHH---HH
Confidence 3678999999999999999999999999999999999988542 11 10 1 11122233322222211 11
Q ss_pred HHhhHHHhh--HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHH
Q 006897 413 ALPIYLQER--RVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASS 490 (627)
Q Consensus 413 ~i~~~~~er--~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s 490 (627)
.-.....|| ..+.+=+... .+...+.+++++...-..++..+++.++.+. .|.+.....+......+++..++..+
T Consensus 78 ~~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 78 SSLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hhhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 111223333 2333333333 4778899999999988888776665555543 36655533444444455666777889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCC---cchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccC
Q 006897 491 LVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYI---PKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKY 567 (627)
Q Consensus 491 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~ 567 (627)
+|.++|+++++...+..+.++++.+++..||.+.+.+.+ |.|++|+.++||+.|..|++-.- +.+
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g----------- 223 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYG----------- 223 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhC-----------
Confidence 999999999999988899999899999999999998766 88999999999999999877431 111
Q ss_pred CCCCCCCCcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 006897 568 NNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSR 620 (627)
Q Consensus 568 ~~~~~~~~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 620 (627)
+ ..|..+.+++++.+++.+++....|+
T Consensus 224 ----------------------~----~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 224 ----------------------Q----LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred ----------------------C----cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 02556777888888888877766544
No 409
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.39 E-value=1.5e-12 Score=159.32 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCCccccC---------------------CCC
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVGDEENR---------------------GIS 213 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~gGe~qr---------------------Pts 213 (627)
.|||.|.+.|... ...-.+..+.|+.+||.. ...+++|||.|| ||+
T Consensus 1660 ~mtv~ea~~~F~~--------~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1660 QTPIEEVAETFPF--------LKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred cCCHHHHHHHhhc--------cHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 3677777666421 122345577888899864 457888999998 999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec------CCeEEeeCCHHHHHH
Q 006897 214 GLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS------RGSVVHYGSLELLEE 275 (627)
Q Consensus 214 gLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 275 (627)
||++.....+++.|++|.+ .|.|||++.||++ +.+.||.|+=|. .|+|++.|+|+++.+
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~-~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVS-LGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9999999999999999986 5899999999996 577799999994 479999999998864
No 410
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.37 E-value=8e-13 Score=131.21 Aligned_cols=153 Identities=22% Similarity=0.314 Sum_probs=92.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----------------CCccceEE--ECCccCCChhhhcccE
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ----------------DFDPRSIT--VNCHQIKKPAQLRKIC 148 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~----------------~~~~G~i~--i~g~~~~~~~~~r~~i 148 (627)
++++++++.+| +.+|+|||||||||||.+|.-.+-.. +...+.|. +++.+ ....++...
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~--~~~~~~n~~ 90 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNP--GNIQVDNLC 90 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCC--CccccCCce
Confidence 46667777776 88999999999999999986443110 00112221 11111 011233334
Q ss_pred EEEccCC-CCCCCCCHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC----------------
Q 006897 149 GFVAQED-NLLPLLTVKETLMFSANFRL-KGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR---------------- 210 (627)
Q Consensus 149 g~v~Q~~-~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr---------------- 210 (627)
-+++|+. .-+..++..|.+. . ++. .... +.....++|||+|+
T Consensus 91 ~~~~q~~~~~~~~~~~~e~l~-~--~~~~~~~~-----------------~~~~~~LS~G~~q~~~i~~~la~~~~~~p~ 150 (213)
T cd03277 91 QFLPQDRVGEFAKLSPIELLV-K--FREGEQLQ-----------------ELDPHHQSGGERSVSTMLYLLSLQELTRCP 150 (213)
T ss_pred EEEchHHHHHHHhCChHhHhe-e--eecCCCcc-----------------ccchhhccccHHHHHHHHHHHHHHhccCCC
Confidence 4667763 3345667766552 1 110 0000 00112333444442
Q ss_pred ------CCCCCCHHHHHHHHHHHHHHHHcCC-CEEEEEccCccHHHHHHhh--hheeecCCe
Q 006897 211 ------GISGLDSTSALQVIELLASMAKAKQ-RTVVLSIHQPSYRILQYIS--KFLILSRGS 263 (627)
Q Consensus 211 ------PtsgLD~~~~~~i~~~L~~l~~~~g-~Tii~~tH~~~~~i~~~~D--~i~vL~~G~ 263 (627)
|++|||+..+..+++.|++++++.| .|+|++||++.. +.+.+| ++++|++|+
T Consensus 151 llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 151 FRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCVYNGP 211 (213)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEEecCc
Confidence 9999999999999999999976534 589999999873 667776 778888886
No 411
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.33 E-value=1e-12 Score=137.91 Aligned_cols=150 Identities=21% Similarity=0.307 Sum_probs=104.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE-----------ECCccCCC-hhhhc---ccEEEEccC----
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT-----------VNCHQIKK-PAQLR---KICGFVAQE---- 154 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~-----------i~g~~~~~-~~~~r---~~ig~v~Q~---- 154 (627)
.++|+++||+||||-||||-+|+|+|.+.|+- |+-. +.|..+.+ -+.+. -++..=+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 56899999999999999999999999999964 3210 11111100 00010 012222332
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CC
Q 006897 155 DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GI 212 (627)
Q Consensus 155 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------Pt 212 (627)
+..+.. +|.|-|.-. +.+-+.+++.+.++|++..+ .++|||.|| |+
T Consensus 174 Pk~~KG-~v~elLk~~-----------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEps 241 (591)
T COG1245 174 PKVVKG-KVGELLKKV-----------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPS 241 (591)
T ss_pred HHHhcc-hHHHHHHhh-----------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCc
Confidence 233333 666665421 12235788999999987765 466999999 99
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 213 SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 213 sgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
|-||...+....+.++++++. +++||++.||+.. +--++|-|.++.
T Consensus 242 SyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLav-LD~lsD~vhI~Y 287 (591)
T COG1245 242 SYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAV-LDYLSDFVHILY 287 (591)
T ss_pred ccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHH-HHHhhheeEEEe
Confidence 999999999999999999875 8999999999973 444678777775
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.32 E-value=1.9e-12 Score=127.55 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=91.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHH
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLM 168 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~ 168 (627)
..++++.+|++++|+||||||||||||+|++..-.. ..|... . .-+..+++..|.. ..+...+++.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~------~---~~~~~i~~~dqi~---~~~~~~d~i~ 86 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFV------P---AESASIPLVDRIF---TRIGAEDSIS 86 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCc------c---ccccccCCcCEEE---EEecCccccc
Confidence 345556689999999999999999999999543211 012211 0 0122344433322 2222333332
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHH-HHHHHHHcCCCEEEEEccCccH
Q 006897 169 FSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIE-LLASMAKAKQRTVVLSIHQPSY 247 (627)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~-~L~~l~~~~g~Tii~~tH~~~~ 247 (627)
... . .-.....++..+++... ...-.+-.| |++|+|+.....+.. +++.+.+ .+.++|++||+++
T Consensus 87 ~~~----s--~~~~e~~~l~~i~~~~~---~~~llllDE---p~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~~- 152 (202)
T cd03243 87 DGR----S--TFMAELLELKEILSLAT---PRSLVLIDE---LGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFHE- 152 (202)
T ss_pred CCc----e--eHHHHHHHHHHHHHhcc---CCeEEEEec---CCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChHH-
Confidence 110 0 00111223444544332 000111222 999999998888765 4566654 5899999999975
Q ss_pred HHHHHhhhheeecCCeEEeeCCHHH
Q 006897 248 RILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 248 ~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
+.+.+|++..+++|++...++..+
T Consensus 153 -~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 153 -LADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred -HHHHhhcCCCeEEEEEEEEecCCe
Confidence 678899999999999988876533
No 413
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=3.8e-12 Score=135.62 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=123.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|...|.+..| +.+.+|++-++++..|..+||+|+||+|||||||+|+. |.|...
T Consensus 79 ~Di~~~~fdLa~---------------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f 134 (582)
T KOG0062|consen 79 KDIHIDNFDLAY---------------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGF 134 (582)
T ss_pred cceeeeeeeeee---------------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCcc
Confidence 358899999999 45679999999999999999999999999999999984 333222
Q ss_pred CccCCChhhhcccEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHcCCccc-----cCCcCCcc
Q 006897 135 CHQIKKPAQLRKICGFVAQE-DNLLPLLTVKETLMFSANFRLKGMSHK-EKEDRVESLMDELGLTHV-----AGSFVGDE 207 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~-----~~~~~gGe 207 (627)
.. +.+.+. -+++-. ..+...+.+.+-+.--..+ ... +.++...++|..+|..+- ...++||=
T Consensus 135 ~v----eqE~~g--~~t~~~~~~l~~D~~~~dfl~~e~~l-----~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGW 203 (582)
T KOG0062|consen 135 HV----EQEVRG--DDTEALQSVLESDTERLDFLAEEKEL-----LAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGW 203 (582)
T ss_pred Cc----hhheec--cchHHHhhhhhccHHHHHHHHhhhhh-----hccchHHHHHHHHHHhCCCCHHHHhccccccCcch
Confidence 11 112221 122221 1233333343333322111 111 233444458888888643 24566886
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE-EeeC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV-VHYG 268 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i-v~~G 268 (627)
|-| ||+.||..+..-+.+.|+.+ +.|+|+||||-.. +-+.|..|+-+++-++ .|.|
T Consensus 204 rMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~F-Ln~V~tdIIH~~~~kL~~YkG 278 (582)
T KOG0062|consen 204 RMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNF-LNTVCTDIIHLENLKLDYYKG 278 (582)
T ss_pred hhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEeccHHH-HHHHHHHHHHHhhhhhhhhcC
Confidence 655 99999999999999999764 4799999999885 7889999999988776 4568
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+.++..
T Consensus 279 N~~~Fv 284 (582)
T KOG0062|consen 279 NYSQFV 284 (582)
T ss_pred cHHHHH
Confidence 776653
No 414
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.31 E-value=2.7e-12 Score=127.75 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=102.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHH
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
.+.+|++++.++ ++++|+||||||||||||++++..-. +. .|..+ ..-+..++++.| +++.+++.
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~v---p~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFV---PASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCee---ccccceecceee---EeccCCch
Confidence 489999999988 99999999999999999999875422 11 11111 111345777754 57889999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccC
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQ 244 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~ 244 (627)
|++..+.. .-.....++..+++...= ..-.+-.|.-+.|+++|.... ...+++.+.+..+.|+|++||+
T Consensus 84 ~~ls~g~s------~f~~e~~~l~~~l~~~~~---~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~ 152 (216)
T cd03284 84 DDLAGGRS------TFMVEMVETANILNNATE---RSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHY 152 (216)
T ss_pred hhhccCcc------hHHHHHHHHHHHHHhCCC---CeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCc
Confidence 99976521 111112334445543210 011113443334899998652 2334444444337899999999
Q ss_pred ccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 245 PSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 245 ~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
. ++.+++|++..+++|++...+..+++
T Consensus 153 ~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 153 H--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred H--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 6 47889999888888998776665544
No 415
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.31 E-value=1.4e-12 Score=130.28 Aligned_cols=151 Identities=18% Similarity=0.206 Sum_probs=87.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCC-------C
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQED-------N 156 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~-------~ 156 (627)
+.+.+|++++..+|++++|.||||+|||||+++++-..--. ..|. |||.+. .
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la--~~g~-------------------~vpa~~~~~~~~~~ 75 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMA--QIGC-------------------FVPCDSADIPIVDC 75 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHH--HhCC-------------------CcCcccEEEeccce
Confidence 35899999999999999999999999999999985110000 0010 111111 1
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 006897 157 LLPLLTVKETLMFSANFRLKGMSH-KEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQ 235 (627)
Q Consensus 157 l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g 235 (627)
++..+-..|.+. .+.+. .....++..+++.+. + ..-.+-.|.-|.|++||+.+.... .++.+.++.|
T Consensus 76 il~~~~l~d~~~-------~~lS~~~~e~~~~a~il~~~~--~-~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~ 143 (222)
T cd03285 76 ILARVGASDSQL-------KGVSTFMAEMLETAAILKSAT--E-NSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIK 143 (222)
T ss_pred eEeeeccccchh-------cCcChHHHHHHHHHHHHHhCC--C-CeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCC
Confidence 111111111110 00110 111223334444321 1 111124454445999999887543 3345544457
Q ss_pred CEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 236 RTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 236 ~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
.++|++||+ . ++.++||++..+++|++...++
T Consensus 144 ~~vlisTH~-~-el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 144 CFCLFATHF-H-ELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CeEEEEech-H-HHHHHhhcCCCeEEEEEEEEEe
Confidence 899999996 3 5889999999999999987654
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.25 E-value=6.3e-12 Score=128.60 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=93.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC---hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK---PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~---~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~ 174 (627)
.-++|+||||||||||+++|+|.++++. |++.++|+++.. ..++.+.++++||++ +.+.++|.||..-.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~---G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k~---- 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI---SQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPKA---- 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC---ceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchHH----
Confidence 5789999999999999999999999864 999999998742 345666788999976 44567887773211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHH-H----
Q 006897 175 LKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYR-I---- 249 (627)
Q Consensus 175 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~-i---- 249 (627)
+.+..++...+ .+-.+-+| |. ..+.+..+++.+ + .|.|+|+++|+.+.+ +
T Consensus 184 ----------~~~~~~i~~~~----P~villDE---~~------~~e~~~~l~~~~-~-~G~~vI~ttH~~~~~~~~~r~ 238 (270)
T TIGR02858 184 ----------EGMMMLIRSMS----PDVIVVDE---IG------REEDVEALLEAL-H-AGVSIIATAHGRDVEDLYKRP 238 (270)
T ss_pred ----------HHHHHHHHhCC----CCEEEEeC---CC------cHHHHHHHHHHH-h-CCCEEEEEechhHHHHHHhCh
Confidence 11222222221 12222333 21 233455555554 3 489999999986531 1
Q ss_pred -------HHHhhhheeecCCeEEeeCCHHHH
Q 006897 250 -------LQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 250 -------~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
..++||+++|++|+ ..|+++++
T Consensus 239 ~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 239 VFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 14589999999877 56666543
No 417
>PRK15066 inner membrane transport permease; Provisional
Probab=99.21 E-value=1.5e-08 Score=103.62 Aligned_cols=242 Identities=12% Similarity=0.160 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHhhccC-CC--Chhh-HHHHHHHHHHHHHHHHHHHHH-HHh
Q 006897 342 ILYEIMVLCSRFWKIIYRTKQL-FLARTMQALVGGFGLGSVYVRV-RK--DEAG-VAERLGLFAFSLSFLLSSTVE-ALP 415 (627)
Q Consensus 342 ~~~q~~~l~~R~~~~~~Rd~~~-~~~r~~~~~~~~l~~G~~f~~~-~~--~~~~-~~~~~g~~ff~~~~~~~~~~~-~i~ 415 (627)
.++-++.+.+|+++...||+.. +..-+++.++..+++|.++-.. +. +.+. ..--.|++.+... ..+.. ...
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~---~~~~~~~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVI---TNSYSNVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3677899999999999999864 4555566667777777665321 11 1111 1111132222111 11111 112
Q ss_pred hHHHhhHH-HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006897 416 IYLQERRV-LMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLF 494 (627)
Q Consensus 416 ~~~~er~v-~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~ 494 (627)
.+..+|.. -.++...--.+...+.+++++...-..++..++..++.+...|.+.. ....++..+++...+....|++
T Consensus 83 ~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 23333311 11222222357888999999988777676666655555554466543 2222333333333333345889
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCC
Q 006897 495 LSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDH 574 (627)
Q Consensus 495 i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~ 574 (627)
++.+.++......+.++++.+++..||.+.|.+++|.|++|+.++||+.|..|++=..-+ +
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~-g------------------ 221 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL-G------------------ 221 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc-C------------------
Confidence 999999988888888999999999999999999999999999999999999998743211 1
Q ss_pred CcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006897 575 FSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRAS 623 (627)
Q Consensus 575 ~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 623 (627)
.+..+.|.++++++++.+++.+++....|++++
T Consensus 222 ----------------~~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 222 ----------------ISDVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred ----------------CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 011234778899999999999998888776654
No 418
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.15 E-value=6.3e-11 Score=114.33 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 210 RGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 210 rPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.|+++||+..+..+.+.|+++++ .|.|+|++||+++ ..+.+|+++.+.+
T Consensus 124 Ep~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 124 EIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 39999999999999999999975 4799999999986 4578999999865
No 419
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.13 E-value=1.2e-10 Score=114.67 Aligned_cols=131 Identities=21% Similarity=0.208 Sum_probs=75.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
..+.+|+++++++|++++|+||||+||||++|+++++.-- +++ | .+| +...+.+++
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G-------------~~v---pa~~~~l~~ 71 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---G-------------CFV---PAEYATLPI 71 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---C-------------CCc---chhhcCccC
Confidence 4589999999999999999999999999999999876421 111 1 011 122233444
Q ss_pred HHHHHHHHHhcCC---CCC--HHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHH-HHHHHHHHcCCCE
Q 006897 164 KETLMFSANFRLK---GMS--HKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVI-ELLASMAKAKQRT 237 (627)
Q Consensus 164 ~e~l~~~~~~~~~---~~~--~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~-~~L~~l~~~~g~T 237 (627)
.|+|......... +.+ ..+.+ ++..+++.. ....-..-.| |++|+|+.....+. ..++.+.+ .|.+
T Consensus 72 ~d~I~~~~~~~d~~~~~~S~fs~e~~-~~~~il~~~---~~~~lvllDE---~~~gt~~~~~~~l~~~il~~l~~-~~~~ 143 (204)
T cd03282 72 FNRLLSRLSNDDSMERNLSTFASEMS-ETAYILDYA---DGDSLVLIDE---LGRGTSSADGFAISLAILECLIK-KEST 143 (204)
T ss_pred hhheeEecCCccccchhhhHHHHHHH-HHHHHHHhc---CCCcEEEecc---ccCCCCHHHHHHHHHHHHHHHHh-cCCE
Confidence 4554332111000 000 01111 222333221 1111111233 88999997766554 56677765 5899
Q ss_pred EEEEccCcc
Q 006897 238 VVLSIHQPS 246 (627)
Q Consensus 238 ii~~tH~~~ 246 (627)
+|++||+.+
T Consensus 144 ~i~~TH~~~ 152 (204)
T cd03282 144 VFFATHFRD 152 (204)
T ss_pred EEEECChHH
Confidence 999999986
No 420
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.11 E-value=2e-10 Score=109.13 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
|++|+|+.....+.+.+.++.++ |.++|++||+++ +.+.+|+++.|+.
T Consensus 108 p~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 108 IDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 89999999999999999998765 889999999986 4678999999864
No 421
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=2.4e-10 Score=118.23 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
|+++||+..+..+.+.|+++.+ +.|+|++||+++ +.+.||++++|.+|.
T Consensus 201 p~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~l~~~~ 249 (276)
T cd03241 201 IDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFLVEKEV 249 (276)
T ss_pred CccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEEEEEec
Confidence 8999999999999999999863 689999999986 568999999998763
No 422
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=3.3e-10 Score=118.21 Aligned_cols=191 Identities=17% Similarity=0.255 Sum_probs=125.2
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCccceE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV---RDQDFDPRSI 131 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~---~~~~~~~G~i 131 (627)
+.|+++|.+.+- ..+.++.|-|+.|-.|..++++||||-||||||+.|+.+- +|. =++
T Consensus 263 ~DIKiEnF~ISA---------------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn----IDv 323 (807)
T KOG0066|consen 263 MDIKIENFDISA---------------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN----IDV 323 (807)
T ss_pred ccceeeeeeeec---------------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC----Cce
Confidence 357778777655 2356899999999999999999999999999999998652 332 223
Q ss_pred EECCccCC-C--h------hhhcccEEEEccCCC-----CCCCCCHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHcCC
Q 006897 132 TVNCHQIK-K--P------AQLRKICGFVAQEDN-----LLPLLTVKETLMFS-ANFRLKGMSHKEKEDRVESLMDELGL 196 (627)
Q Consensus 132 ~i~g~~~~-~--~------~~~r~~ig~v~Q~~~-----l~~~lTV~e~l~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL 196 (627)
.+-.+.+. + . +.-.++..++-.+.. --...|+.|.+.-. ..++.-+ ....+.++.++|.-+|.
T Consensus 324 LlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiG--A~sAEarARRILAGLGF 401 (807)
T KOG0066|consen 324 LLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG--ADSAEARARRILAGLGF 401 (807)
T ss_pred EeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhc--cccchhHHHHHHhhcCC
Confidence 33222221 0 0 000111222211111 11235666666542 2233222 22345677888888887
Q ss_pred cccc-----CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh
Q 006897 197 THVA-----GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI 253 (627)
Q Consensus 197 ~~~~-----~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~ 253 (627)
+.-. +..+||=|-| ||+.||..+..-+-+.|+.+. +|.++++||-.. +-..|
T Consensus 402 skEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHDQgF-LD~VC 476 (807)
T KOG0066|consen 402 SKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQGF-LDSVC 476 (807)
T ss_pred ChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEEEecccch-HHHHH
Confidence 6432 3445887765 999999998888888998873 599999999986 88899
Q ss_pred hhheeecCCeEEe-eCCHH
Q 006897 254 SKFLILSRGSVVH-YGSLE 271 (627)
Q Consensus 254 D~i~vL~~G~iv~-~G~~~ 271 (627)
..|+-|++-++-+ .|+..
T Consensus 477 tdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 477 TDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred HHHhhhhhhhhhhhcchHH
Confidence 9999999988754 46543
No 423
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.95 E-value=3.4e-09 Score=110.87 Aligned_cols=156 Identities=18% Similarity=0.276 Sum_probs=112.8
Q ss_pred cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCC
Q 006897 84 LHILKSVSFEARDS-----EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLL 158 (627)
Q Consensus 84 ~~iL~~vsl~i~~G-----e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~ 158 (627)
+.-+-+..+.|+.| |++..+|+||.||||++++++|+++|+. .|++.. -.++|=||...--
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p~------------lnVSykpqkispK 414 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIPV------------LNVSYKPQKISPK 414 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCcccc------------cceeccccccCcc
Confidence 44678888888888 5789999999999999999999999874 244422 1367888874433
Q ss_pred CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CCCCCC
Q 006897 159 PLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GISGLD 216 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------PtsgLD 216 (627)
..-||++.+.--. + +.-....-+.++++-+.+++..+ .++|||.|| |.+-||
T Consensus 415 ~~~tvR~ll~~kI--r----~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylD 488 (592)
T KOG0063|consen 415 REGTVRQLLHTKI--R----DAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLD 488 (592)
T ss_pred ccchHHHHHHHHh--H----hhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcC
Confidence 3458988775422 1 11112334566667666665554 456999999 778899
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
+..+..--..+++.--..++|-.++.||.-. .--++||+++..
T Consensus 489 SeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 489 SEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred hHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 9999888888888655567899999999864 335689888764
No 424
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.94 E-value=1.1e-07 Score=97.17 Aligned_cols=167 Identities=19% Similarity=0.348 Sum_probs=123.8
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Q 006897 422 RVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLS-AISP 500 (627)
Q Consensus 422 ~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~-~~~~ 500 (627)
..+.|=..+-.-+ ..+++++.+...-...+...+...++.+..|.. ....+..+..++.+..+...++|.+++ ...+
T Consensus 118 g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 195 (286)
T COG0842 118 GTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAKS 195 (286)
T ss_pred CcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444433 567777777777776666666666666677632 333456666777777777888888666 3666
Q ss_pred CHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCCCccccc
Q 006897 501 DFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFSKCLL 580 (627)
Q Consensus 501 ~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~~c~~ 580 (627)
+...+..+..++..++..++|.+.|.+.+|.|++|+.+++|.+|+.+++-.....+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~---------------------- 253 (286)
T COG0842 196 QLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR---------------------- 253 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc----------------------
Confidence 7778888888889999999999999999999999999999999999998665543321
Q ss_pred chHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006897 581 TGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASK 624 (627)
Q Consensus 581 ~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 624 (627)
.+..|.++++++++.+++.+++.+.++++.+.
T Consensus 254 ------------~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 254 ------------NDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred ------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11267889999999999999999999887654
No 425
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.93 E-value=4.7e-10 Score=120.88 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=51.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh-----hhhcccEEEEccCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP-----AQLRKICGFVAQED 155 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~-----~~~r~~ig~v~Q~~ 155 (627)
+.+|++||+++++||+++|+|||||||||||+ +|+..|+. .|+|.++|.++..+ ..+| +|+|+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~s--Gg~I~ldg~~~~~~~~~ai~~LR----~VFQ~f 87 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSE--GYEFFLDATHSFSPNKNAMETLD----EIFDGF 87 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCC--CCEEEECCEECCCCCHHHHHHHH----HHHHhh
Confidence 35899999999999999999999999999999 78877753 24899999987432 1233 788864
No 426
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.83 E-value=6.8e-09 Score=122.47 Aligned_cols=113 Identities=24% Similarity=0.364 Sum_probs=87.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHHHcCCccc-cC----CcCCccccC---------------
Q 006897 158 LPLLTVKETLMFSANFRLKGMS-------HKEKEDRVESLMDELGLTHV-AG----SFVGDEENR--------------- 210 (627)
Q Consensus 158 ~~~lTV~e~l~~~~~~~~~~~~-------~~~~~~~v~~~l~~lgL~~~-~~----~~~gGe~qr--------------- 210 (627)
+..+||.|.+.|.-.+...... -++..++++ .|+.+||.+. .+ +++|||+||
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 4468999999985433211100 013445554 6888898755 34 556999998
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHH
Q 006897 211 -----GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 211 -----PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
||+|||+..+..+++.|+++++ .|.|||+++|+++ ++ ..||++++| ++|++++.|+++++.
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 9999999999999999999975 5999999999998 35 569999999 899999999998874
No 427
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=9.2e-09 Score=121.18 Aligned_cols=112 Identities=24% Similarity=0.362 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHHcCCccc-----cCCcCCccccC----------------
Q 006897 159 PLLTVKETLMFSANFRLKGMSH-------KEKEDRVESLMDELGLTHV-----AGSFVGDEENR---------------- 210 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~-------~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr---------------- 210 (627)
-.|||.|.+.|...+....... ++..+++ +.|..+||... ..+++|||+||
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 3689999988875432211001 1222333 23677787643 45667999998
Q ss_pred ----CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHH
Q 006897 211 ----GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 211 ----PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
||+|||+.....+++.|+++++ .|.|||+|+||++ ++ ..||++++| ++|++++.|+++++.
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 8999999999999999999976 5999999999997 35 589999999 899999999998874
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.80 E-value=4e-08 Score=98.03 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=77.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc-CCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG-RVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G-l~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
..+.+|+++++++|++++|+||||+||||+++++++ .+.+. .|.... ++. -.++|..|- +..+.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~---~G~~v~-a~~--------~~~~~~~~i---~~~~~ 82 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ---IGSFVP-ASS--------ATLSIFDSV---LTRMG 82 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh---CCCEEE-cCc--------eEEeccceE---EEEec
Confidence 358999999999999999999999999999999998 34443 255432 111 113333221 11122
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEc
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSI 242 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~t 242 (627)
..|++.-+... -..+ -+++.++++...= ..-.+-.|--+.|+.+|..+. ....++.+.+..+.++|++|
T Consensus 83 ~~d~~~~~~St-----F~~e-~~~~~~il~~~~~---~sLvllDE~~~gT~~~d~~~i--~~~il~~l~~~~~~~~i~~T 151 (222)
T cd03287 83 ASDSIQHGMST-----FMVE-LSETSHILSNCTS---RSLVILDELGRGTSTHDGIAI--AYATLHYLLEEKKCLVLFVT 151 (222)
T ss_pred Cccccccccch-----HHHH-HHHHHHHHHhCCC---CeEEEEccCCCCCChhhHHHH--HHHHHHHHHhccCCeEEEEc
Confidence 22222211000 0011 2334555554321 111113343334454554331 23455555543478999999
Q ss_pred cCccHHHHHHhh
Q 006897 243 HQPSYRILQYIS 254 (627)
Q Consensus 243 H~~~~~i~~~~D 254 (627)
|+++ +.++.+
T Consensus 152 H~~~--l~~~~~ 161 (222)
T cd03287 152 HYPS--LGEILR 161 (222)
T ss_pred ccHH--HHHHHH
Confidence 9986 455554
No 429
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=3.8e-08 Score=101.51 Aligned_cols=48 Identities=6% Similarity=0.150 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh---hhheeecCCeE
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI---SKFLILSRGSV 264 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~---D~i~vL~~G~i 264 (627)
|+++||+..+..+.+.++++ + .+++++|+.+ ++.++| ++++.+++|++
T Consensus 219 p~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~-~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 219 VLAELDLGRQAALLDAIEGR----V-QTFVTTTDLA-DFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred cchhcCHHHHHHHHHHhhcC----C-CEEEEeCCch-hccchhccCccEEEEeCcEE
Confidence 89999999999999999764 2 3455555554 366777 68999999985
No 430
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.75 E-value=6.9e-08 Score=95.95 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=75.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCccceEEECCccCCChhhhcccEEEEccCCC-CCCCCC
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG--RVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDN-LLPLLT 162 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G--l~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~-l~~~lT 162 (627)
|=+|+++.=..+.+++|.||||+|||||||.++. .+. . .|..... . ...++|..|... +-...+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la-~---~G~~v~a-------~--~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA-H---IGSFVPA-------D--SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH-h---CCCeeEc-------C--CcEEeeeeeeeeeeCCccC
Confidence 4566665422238999999999999999999983 332 1 1443321 1 123677777532 333446
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHH-HHHHHHHHHc--CCCEEE
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQV-IELLASMAKA--KQRTVV 239 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i-~~~L~~l~~~--~g~Tii 239 (627)
+.+++... ..+ -+++..++.... ...-..-.| |++|+|+.....+ ...++++.++ .+.++|
T Consensus 85 i~~~~S~f---------~~e-l~~l~~~l~~~~---~~slvllDE---~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vl 148 (213)
T cd03281 85 VSSGQSAF---------MID-LYQVSKALRLAT---RRSLVLIDE---FGKGTDTEDGAGLLIATIEHLLKRGPECPRVI 148 (213)
T ss_pred hhhccchH---------HHH-HHHHHHHHHhCC---CCcEEEecc---ccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 65555321 111 223333433321 000011223 8899999765544 5688888653 135899
Q ss_pred EEccCcc
Q 006897 240 LSIHQPS 246 (627)
Q Consensus 240 ~~tH~~~ 246 (627)
++||+++
T Consensus 149 i~TH~~~ 155 (213)
T cd03281 149 VSTHFHE 155 (213)
T ss_pred EEcChHH
Confidence 9999986
No 431
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.72 E-value=4.2e-08 Score=107.02 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=103.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh----------hhhcccEEEEc
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP----------AQLRKICGFVA 152 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~----------~~~r~~ig~v~ 152 (627)
..++++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.+...|..-.+. ..+++.+-++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~---~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADV---NVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCE---EEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35689999 9999999999999999999999999999987753 5555544331111 11233344444
Q ss_pred cCCCCCCCCCHHHHHH--HH-----HHhcCCCCC---HHHHHHHHHHHHHHcCCccccCCcCCccccCC-CCCCCHHHHH
Q 006897 153 QEDNLLPLLTVKETLM--FS-----ANFRLKGMS---HKEKEDRVESLMDELGLTHVAGSFVGDEENRG-ISGLDSTSAL 221 (627)
Q Consensus 153 Q~~~l~~~lTV~e~l~--~~-----~~~~~~~~~---~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrP-tsgLD~~~~~ 221 (627)
+.+. ++.+-.. +. -.++..+.+ --+.-.+..+++.++++. -|| -| +.|+||....
T Consensus 226 ~~d~-----~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~-------~ge--~P~~~Gypp~~~~ 291 (440)
T TIGR01026 226 TSDQ-----SPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLA-------AGE--PPATKGYTPSVFS 291 (440)
T ss_pred CCCC-----CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHh-------cCC--CCcccccChhHHH
Confidence 4322 1111111 00 000000000 000111222233333221 111 12 4699999999
Q ss_pred HHHHHHHHHHHcCCC-------EEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHH
Q 006897 222 QVIELLASMAKAKQR-------TVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLEL 272 (627)
Q Consensus 222 ~i~~~L~~l~~~~g~-------Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 272 (627)
.+-+++.+... .+. ||++.+||++ ..++|++..+.+|+++.+.+.++
T Consensus 292 ~l~~l~ERag~-~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 292 TLPRLLERAGA-SGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred HHHHHHHHhcc-CCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 99999999864 467 8999999986 36799999999999999887653
No 432
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.71 E-value=1.4e-08 Score=109.92 Aligned_cols=176 Identities=14% Similarity=0.146 Sum_probs=109.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--------hhhhcccEEEEccC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--------PAQLRKICGFVAQE 154 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--------~~~~r~~ig~v~Q~ 154 (627)
...+|+++ +++.+||+++|+|+||+|||||+++|+|..+++....|.|..+++++.+ ....|..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45699999 9999999999999999999999999999987753223556556655421 01124579999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcC-CCCC---HHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHH
Q 006897 155 DNLLPLLTVKETLMFSANFRL-KGMS---HKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASM 230 (627)
Q Consensus 155 ~~l~~~lTV~e~l~~~~~~~~-~~~~---~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l 230 (627)
...+..+++.+++...+.... .+.+ --+.-.+..++..++++. ..+.+ ...|-.+..-..+-+++.+.
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl~--~ge~P------~~~Gyp~svf~~l~~l~ERa 292 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALS--LGEPP------ATKGYPPSAFSIIPRLAESA 292 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHHh--cCCCC------cccCcCHHHHHHhHHHHHHh
Confidence 999999999999988765421 1100 001122333344444431 11111 12356666666666666664
Q ss_pred HHcC--C-CEEEEEccCccHHH-HHHhhhheeecCCeEEee
Q 006897 231 AKAK--Q-RTVVLSIHQPSYRI-LQYISKFLILSRGSVVHY 267 (627)
Q Consensus 231 ~~~~--g-~Tii~~tH~~~~~i-~~~~D~i~vL~~G~iv~~ 267 (627)
-+-. | .|.+.+..-+..++ .-.+|.+.-+-+|+|+-+
T Consensus 293 g~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 293 GNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred hcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 2222 2 35555444221111 236788888889999864
No 433
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.70 E-value=8.6e-08 Score=100.70 Aligned_cols=144 Identities=12% Similarity=0.149 Sum_probs=93.4
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCC-CCCCCCCHHHHHH
Q 006897 90 VSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQED-NLLPLLTVKETLM 168 (627)
Q Consensus 90 vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~ 168 (627)
+++.++.|+.++|+||+|||||||+++|++.+++.. |.+.+....-.... -+..+.++.+.. .-....|..+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~---~iv~ied~~El~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~ 212 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE---RIITIEDTREIFLP-HPNYVHLFYSKGGQGLAKVTPKDLLQ 212 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccc---cEEEEcCccccCCC-CCCEEEEEecCCCCCcCccCHHHHHH
Confidence 567889999999999999999999999999998753 77777532101111 123455544421 1123356666554
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHH
Q 006897 169 FSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYR 248 (627)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~ 248 (627)
...+ ...+..+-||-+ + .+..+.++.+. ..+.+++.++|..+
T Consensus 213 ~~Lr-------------------------~~pd~ii~gE~r---~-------~e~~~~l~a~~-~g~~~~i~T~Ha~~-- 254 (308)
T TIGR02788 213 SCLR-------------------------MRPDRIILGELR---G-------DEAFDFIRAVN-TGHPGSITTLHAGS-- 254 (308)
T ss_pred HHhc-------------------------CCCCeEEEeccC---C-------HHHHHHHHHHh-cCCCeEEEEEeCCC--
Confidence 4321 112233334433 1 34566777765 33446799999988
Q ss_pred HHHHhhhheeecCCeEEeeCCHHHHHH
Q 006897 249 ILQYISKFLILSRGSVVHYGSLELLEE 275 (627)
Q Consensus 249 i~~~~D~i~vL~~G~iv~~G~~~~~~~ 275 (627)
+.+..||+..|..|++...|.+.+...
T Consensus 255 ~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 255 PEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHHHHHHHHHhhccccccCCCHHHHH
Confidence 467799999999999988888766553
No 434
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.68 E-value=6.6e-07 Score=84.12 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=93.1
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 006897 419 QERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIE--AFVFFIFVVWLIVLMASSLVLFLS 496 (627)
Q Consensus 419 ~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~--~f~~f~~~~~l~~~~~~s~~~~i~ 496 (627)
+|+..+.|-+..-. +.+.|+++|++...-..+++.++..++.+. .|.+.... ..+.+++...+...+...++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555 788999999999999999998887777754 48877632 122222233333444445566665
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHH
Q 006897 497 AISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLL 550 (627)
Q Consensus 497 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~ 550 (627)
...++.+..+ ...++..+++..||.+.|.+++|.|++|+.+++|++|+.+++=
T Consensus 94 ~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 94 LRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 5566655433 4466777888889999999999999999999999999999874
No 435
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.59 E-value=1.2e-07 Score=92.10 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=60.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCC--CCCCCCCH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQED--NLLPLLTV 163 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~--~l~~~lTV 163 (627)
..+=+.+.+++|+.++|+||||||||||+++|+|+++++. |.+.+.+..-... ..+..++++.|.. ...+..++
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~---~~i~ied~~E~~~-~~~~~~~~~~~~~~~~~~~~~~~ 89 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE---RIITIEDTAELQL-PHPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEECCccccCC-CCCCEEEEEEecCCCCCCCccCH
Confidence 4555667799999999999999999999999999998753 8888876432111 1234567766653 34566788
Q ss_pred HHHHHHHH
Q 006897 164 KETLMFSA 171 (627)
Q Consensus 164 ~e~l~~~~ 171 (627)
.+.+....
T Consensus 90 ~~~l~~~l 97 (186)
T cd01130 90 ADLLRSAL 97 (186)
T ss_pred HHHHHHHh
Confidence 88887654
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.57 E-value=9e-08 Score=95.23 Aligned_cols=137 Identities=19% Similarity=0.234 Sum_probs=82.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
..+-+|++++.++|++++|.||||+||||+++++++..--.. .|. .+.. + +..++++ +.++..+..
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~--~G~------~vpa-~--~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ--MGM------DVPA-K--SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH--cCC------ccCc-c--ccEeccc---cEEEEecCc
Confidence 358899999999999999999999999999999986532111 011 1100 0 0112221 233444445
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC-CccccCCCCCCCHHHHHHHHHH-HHHHHHcCCCEEEEE
Q 006897 164 KETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV-GDEENRGISGLDSTSALQVIEL-LASMAKAKQRTVVLS 241 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-gGe~qrPtsgLD~~~~~~i~~~-L~~l~~~~g~Tii~~ 241 (627)
.|++..+.. +-...-.++.++++...= ..++ -.| |.+|+|+.....+... ++.+.+..+.++|++
T Consensus 83 ~d~~~~~~S------tF~~e~~~~~~il~~~~~----~sLvLlDE---~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~ 149 (218)
T cd03286 83 RDDIMKGES------TFMVELSETANILRHATP----DSLVILDE---LGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS 149 (218)
T ss_pred ccccccCcc------hHHHHHHHHHHHHHhCCC----CeEEEEec---ccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 555543210 001112334555554321 1111 223 7788898888888877 677765348999999
Q ss_pred ccCccH
Q 006897 242 IHQPSY 247 (627)
Q Consensus 242 tH~~~~ 247 (627)
||+++.
T Consensus 150 TH~~el 155 (218)
T cd03286 150 THYHSL 155 (218)
T ss_pred eccHHH
Confidence 999863
No 437
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.57 E-value=1.8e-07 Score=101.53 Aligned_cols=183 Identities=16% Similarity=0.160 Sum_probs=105.4
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...++.++++..|.. ...+++.++ .+.+||.++|+||||+|||||+++|+|+.+|+. |.+.+
T Consensus 137 p~~~~r~~v~~~l~T--------------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~---gvv~l 198 (450)
T PRK06002 137 PPAMTRARVETGLRT--------------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDT---VVIAL 198 (450)
T ss_pred CCCeEeecceEEcCC--------------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCe---eeeee
Confidence 346899999998842 356899996 999999999999999999999999999988753 88877
Q ss_pred CC---ccCCC--h----hhhcccEEEEccCCCC--------CCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcC
Q 006897 134 NC---HQIKK--P----AQLRKICGFVAQEDNL--------LPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELG 195 (627)
Q Consensus 134 ~g---~~~~~--~----~~~r~~ig~v~Q~~~l--------~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lg 195 (627)
.| +++.. . ...++.+++|+|.+.- +..+|+.|.++- ..... ---+.-.+..++..+++
T Consensus 199 iGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfrd----~G~~Vll~~DslTr~A~A~rEis 274 (450)
T PRK06002 199 VGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFRD----RGENVLLIVDSVTRFAHAAREVA 274 (450)
T ss_pred cccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHH----cCCCEEEeccchHHHHHHHHHHH
Confidence 54 44321 1 1234679999997641 112233333321 00000 00011223333444444
Q ss_pred CccccCCcCCccccCCC-CCCCHHHHHHHHHHHHHHHH--c-CC-CEEEEEccCccHHH-HHHhhhheeecCCeEEee
Q 006897 196 LTHVAGSFVGDEENRGI-SGLDSTSALQVIELLASMAK--A-KQ-RTVVLSIHQPSYRI-LQYISKFLILSRGSVVHY 267 (627)
Q Consensus 196 L~~~~~~~~gGe~qrPt-sgLD~~~~~~i~~~L~~l~~--~-~g-~Tii~~tH~~~~~i-~~~~D~i~vL~~G~iv~~ 267 (627)
+. .++. |. .|-.+..-..+-+++.+..+ + .| .|.+.+..-+..++ .-++|.+.-+-+|+|+-+
T Consensus 275 l~--~ge~-------P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLs 343 (450)
T PRK06002 275 LA--AGEP-------PVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLD 343 (450)
T ss_pred Hh--cCCC-------CccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEc
Confidence 31 1111 22 24444444455555555443 1 12 46665544222122 235778888888999864
No 438
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.57 E-value=1.4e-07 Score=110.02 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=76.5
Q ss_pred eEEEEeCC-eEEEEECCCCCcHHHHHHHHHcC-CCCCCCccc-eEEECCccCCChhhhcccEEEEccCCCC-CCCCCHHH
Q 006897 90 VSFEARDS-EILAVVGPSGTGKSSLLRIISGR-VRDQDFDPR-SITVNCHQIKKPAQLRKICGFVAQEDNL-LPLLTVKE 165 (627)
Q Consensus 90 vsl~i~~G-e~~aIiGpnGsGKSTLl~~L~Gl-~~~~~~~~G-~i~i~g~~~~~~~~~r~~ig~v~Q~~~l-~~~lTV~e 165 (627)
+|+++.+| ++++|.||||+|||||||+|+|. +.+.. | .|... -...++|..|.... -+..++.+
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~---G~~Vpa~---------~~~~~~~~d~i~~~i~~~~si~~ 381 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS---GIPIPAN---------EHSEIPYFEEIFADIGDEQSIEQ 381 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh---CCCccCC---------ccccccchhheeeecChHhHHhh
Confidence 78888887 99999999999999999999987 33321 3 11110 01224454443221 12234444
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHH-HHHHHHHHHcCCCEEEEEccC
Q 006897 166 TLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQV-IELLASMAKAKQRTVVLSIHQ 244 (627)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i-~~~L~~l~~~~g~Tii~~tH~ 244 (627)
++... + .+.. ++..++..+. + ..-.+-.| |++|+|+.....+ ..+++.+.+ .|.++|++||+
T Consensus 382 ~LStf--------S-~~m~-~~~~il~~~~--~-~sLvLlDE---~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~ 444 (771)
T TIGR01069 382 NLSTF--------S-GHMK-NISAILSKTT--E-NSLVLFDE---LGAGTDPDEGSALAISILEYLLK-QNAQVLITTHY 444 (771)
T ss_pred hhhHH--------H-HHHH-HHHHHHHhcC--C-CcEEEecC---CCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCh
Confidence 44321 1 1111 2333444331 0 01111223 8999999999998 567777765 68999999999
Q ss_pred cc
Q 006897 245 PS 246 (627)
Q Consensus 245 ~~ 246 (627)
.+
T Consensus 445 ~e 446 (771)
T TIGR01069 445 KE 446 (771)
T ss_pred HH
Confidence 76
No 439
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.52 E-value=1.3e-07 Score=91.87 Aligned_cols=53 Identities=6% Similarity=0.034 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHH-HHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 211 GISGLDSTSALQVI-ELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 211 PtsgLD~~~~~~i~-~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
|++|+|+.....+. ..++.+.++.+.++|++||+++ +.+++|+.--+++++..
T Consensus 87 p~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~~~~v~~~~~~ 140 (185)
T smart00534 87 LGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADEHPGVRNLHMS 140 (185)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhcCccceEEEEE
Confidence 99999999887765 5566665534789999999984 67888864444444443
No 440
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.52 E-value=9.9e-09 Score=102.38 Aligned_cols=70 Identities=21% Similarity=0.410 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCccccCCcCCccccC----------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEE
Q 006897 184 EDRVESLMDELGLTHVAGSFVGDEENR----------------------GISGLDSTSALQVIELLASMAKAKQRTVVLS 241 (627)
Q Consensus 184 ~~~v~~~l~~lgL~~~~~~~~gGe~qr----------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~ 241 (627)
.+.+.+.++..++.. +.++|||+.+ +.++||...+..+.++|+++.+ +.-+|++
T Consensus 120 ~~~~~~~l~~~~i~~--~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~ 195 (220)
T PF02463_consen 120 LKDLEELLPEVGISP--EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIIT 195 (220)
T ss_dssp HHHHHHHHHCTTTTT--TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence 355666676666643 2677888765 5699999999999999999863 4679999
Q ss_pred ccCccHHHHHHhhhheee
Q 006897 242 IHQPSYRILQYISKFLIL 259 (627)
Q Consensus 242 tH~~~~~i~~~~D~i~vL 259 (627)
||+.. ....+|+.+.+
T Consensus 196 Th~~~--~~~~a~~~~~v 211 (220)
T PF02463_consen 196 THNPE--MFEDADKLIGV 211 (220)
T ss_dssp -S-HH--HHTT-SEEEEE
T ss_pred ccccc--ccccccccccc
Confidence 99975 68889987765
No 441
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.48 E-value=1.1e-07 Score=96.53 Aligned_cols=165 Identities=13% Similarity=0.124 Sum_probs=88.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE--CCccCCChhhhcccE---EEEccCCCCCCCC---CH
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV--NCHQIKKPAQLRKIC---GFVAQEDNLLPLL---TV 163 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i--~g~~~~~~~~~r~~i---g~v~Q~~~l~~~l---TV 163 (627)
+.+.+||.++|+||+|+|||||++.|++.+.....+ ..+.+ -+++-.+..++.+.+ -++.+-+. .+.. ..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fd-v~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~ 88 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPE-VYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVA 88 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCC-eEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHH
Confidence 578999999999999999999999999887653211 23222 222111223333222 22222221 1110 01
Q ss_pred HHHHHHHHHhcCCCCC----HHHHHHHHHHHHHHcCCccccCCcCCcc--------ccC----------------CCCCC
Q 006897 164 KETLMFSANFRLKGMS----HKEKEDRVESLMDELGLTHVAGSFVGDE--------ENR----------------GISGL 215 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~----~~~~~~~v~~~l~~lgL~~~~~~~~gGe--------~qr----------------PtsgL 215 (627)
+.-+..+...+..+.+ -++ -.+..+..+.+.+.. -..++||+ +|| +|+.+
T Consensus 89 ~~~~~~a~~~~~~G~~vll~iDe-i~r~a~a~~ev~~~~-G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~ 166 (249)
T cd01128 89 EMVLEKAKRLVEHGKDVVILLDS-ITRLARAYNTVVPPS-GKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALV 166 (249)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEC-HHHhhhhhhhccccC-CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehee
Confidence 1111111111111100 011 122333334443322 12235787 555 77888
Q ss_pred CHHHHHH-HHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 216 DSTSALQ-VIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 216 D~~~~~~-i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
|+.+..+ ++ +.++.. .+.|.|+.+|++. ....+|.|.+|+.|++.
T Consensus 167 d~~~~~~~~i--~~~~~~-~~~~~ivls~~la--~~~~~paI~vl~s~sr~ 212 (249)
T cd01128 167 DTGSRMDDVI--FEEFKG-TGNMELVLDRRLA--ERRIFPAIDILKSGTRK 212 (249)
T ss_pred cCCCcccchH--HHHHhc-CCCcEEEEchHHh--hCCCCCeEEEcCCCCcc
Confidence 8644443 54 455533 4689999999997 36789999999999974
No 442
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.45 E-value=1.2e-07 Score=91.28 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=48.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcc-cEEEEccCCCCCCCCCHHHHHHHH
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRK-ICGFVAQEDNLLPLLTVKETLMFS 170 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~-~ig~v~Q~~~l~~~lTV~e~l~~~ 170 (627)
+||+++|+|+||||||||+++|+|++.+ +.++|.++......++ ..|+.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999998754 4677776533222222 356777775555566666666654
No 443
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.44 E-value=9.8e-08 Score=95.85 Aligned_cols=163 Identities=20% Similarity=0.157 Sum_probs=91.3
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCCccceEEECCccCCChhh---hcccEEEEccCCCCCC
Q 006897 86 ILKSV-SFEARDSEILAVVGPSGTGKSSLLRIIS--GRVRDQDFDPRSITVNCHQIKKPAQ---LRKICGFVAQEDNLLP 159 (627)
Q Consensus 86 iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L~--Gl~~~~~~~~G~i~i~g~~~~~~~~---~r~~ig~v~Q~~~l~~ 159 (627)
-||++ ..-+++|++++|.||+|+|||||...++ ++ ++.. +.+.+.... ..++ ..+..|+.+|+....+
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~---~~~~is~e~--~~~~i~~~~~~~g~~~~~~~~~~ 81 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGD---PVIYVTTEE--SRESIIRQAAQFGMDFEKAIEEG 81 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCC---eEEEEEccC--CHHHHHHHHHHhCCCHHHHhhcC
Confidence 46664 5679999999999999999999988654 43 3321 456665533 1122 2334666666432222
Q ss_pred CCCHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHHcCCcc---ccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcC
Q 006897 160 LLTVKETLMFSA--NFRLKGMSHKEKEDRVESLMDELGLTH---VAGSFVGDEENRGISGLDSTSALQVIELLASMAKAK 234 (627)
Q Consensus 160 ~lTV~e~l~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~ 234 (627)
.+.+.|.+.... .......+.++..+++.++++..|+.. +.|.+..=-.. ++....++...|++..++.
T Consensus 82 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~------~~~~~r~~~~~l~~~l~~~ 155 (229)
T TIGR03881 82 KLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLD------KPAMARKYSYYLKRVLNRW 155 (229)
T ss_pred CEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhcc------ChHHHHHHHHHHHHHHHhC
Confidence 233333221000 000112345666777888888776432 22322110000 3333455555566665668
Q ss_pred CCEEEEEccCccH-------HHHHHhhhheeec
Q 006897 235 QRTVVLSIHQPSY-------RILQYISKFLILS 260 (627)
Q Consensus 235 g~Tii~~tH~~~~-------~i~~~~D~i~vL~ 260 (627)
|.|+|+++|.... .+..+||.|+.|+
T Consensus 156 ~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 156 NFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 9999999995431 2345678888876
No 444
>PRK00064 recF recombination protein F; Reviewed
Probab=98.36 E-value=3.1e-06 Score=90.94 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh--hhheeecCCeE
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI--SKFLILSRGSV 264 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~--D~i~vL~~G~i 264 (627)
|+++||+..+..+++.+.++ +..+++++|+++. +...+ ++++.+++|++
T Consensus 309 ~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~-~~~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 309 VASELDDGRRAALLERLKGL----GAQVFITTTDLED-LADLLENAKIFHVEQGKI 359 (361)
T ss_pred chhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhh-hhhhhccCcEEEEeCCEE
Confidence 88999999999999988754 3578999998763 55554 47889999987
No 445
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.35 E-value=0.00014 Score=73.59 Aligned_cols=219 Identities=14% Similarity=0.128 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcc---C-CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhH
Q 006897 347 MVLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVR---V-RKDEAGVAERLGLFAFSLSFLLSSTVEALPIYLQERR 422 (627)
Q Consensus 347 ~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~---~-~~~~~~~~~~~g~~ff~~~~~~~~~~~~i~~~~~er~ 422 (627)
+.+.||+++.+.|.|..+..-.+-.++.|+.. ..|.. . ..+.++...-.+.. ...++.. +|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~-----~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLA--PWVFLFL-----IPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHH--HHHHHHH-----HHHH--HHH
Confidence 46889999999999998877666666666442 22211 1 11112222111111 1111111 1111 224
Q ss_pred HHHHHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---Hhhhhhhcccccc---ccHHHHHHHHHHHHHHHHHH
Q 006897 423 VLMKEASREAY--------RISSYLIANTIVFLPFLFVVSL---LFAIPVYWIVGLN---PSIEAFVFFIFVVWLIVLMA 488 (627)
Q Consensus 423 v~~rE~~~~~Y--------~~~~y~la~~l~~lp~~~~~~~---~f~~i~Y~~~gl~---~~~~~f~~f~~~~~l~~~~~ 488 (627)
.+.+||++|.. +.+.+.++|.++-.-..++..+ ++....++ .|.+ .+...++...+..++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHHH
Confidence 55667766654 4578899999987655443322 22222222 2222 24455555555566677788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCC--cchhhhhhhhchhHHHHHHHHHHHhCCCCcccccccc
Q 006897 489 SSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYI--PKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQK 566 (627)
Q Consensus 489 ~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~ 566 (627)
.++|.++|+++++...|..+...+... ++.|+.. ..++ |.+..|+.|+||..|-.+.. . | .
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-~----g-~-------- 213 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-R----G-V-------- 213 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-c----C-c--------
Confidence 899999999999998886555433222 2222211 2333 78899999999977643322 0 0 0
Q ss_pred CCCCCCCCCcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhh
Q 006897 567 YNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRR 621 (627)
Q Consensus 567 ~~~~~~~~~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~ 621 (627)
+ .|.++...+.+.+++..++...+++|
T Consensus 214 ------------------------i----~~~~~v~~~~~~~~~l~l~~~~~~~r 240 (240)
T TIGR03518 214 ------------------------I----DSRDVIYFLSITVLFLALTKLQLKSR 240 (240)
T ss_pred ------------------------c----cHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 14678888888888888888777654
No 446
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.35 E-value=1.4e-06 Score=98.33 Aligned_cols=114 Identities=23% Similarity=0.363 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHH------HHHcCCc-----cccCCcCCccccC-----------------
Q 006897 159 PLLTVKETLMFSANFRLKGMSHKEKEDRVESL------MDELGLT-----HVAGSFVGDEENR----------------- 210 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~-----~~~~~~~gGe~qr----------------- 210 (627)
..|++.|.+.|...+.+....+...++.+.++ |..+||+ .-+.+++|||.||
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYV 506 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYV 506 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEE
Confidence 45788888888765543221111112222222 3334654 4567889999999
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHHH
Q 006897 211 ---GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLEE 275 (627)
Q Consensus 211 ---PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 275 (627)
|.-||-+.....+++.|++|++ .|-|+|+|.||.+ ..+.||+|+=| +.|+|++.|+++++.+
T Consensus 507 LDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 507 LDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 9999999999999999999975 6999999999986 67899999987 4689999999999863
No 447
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.30 E-value=5.9e-06 Score=89.94 Aligned_cols=173 Identities=17% Similarity=0.205 Sum_probs=102.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC---ccCCC--hhhhc---ccEEEE---
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC---HQIKK--PAQLR---KICGFV--- 151 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g---~~~~~--~~~~r---~~ig~v--- 151 (627)
..+++|++ +++.+||.++|+|+||+|||||+++|+|..+.. +.|.|.+.| +++.+ ...++ .+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 35689998 999999999999999999999999999988542 226676644 44321 11121 234555
Q ss_pred --ccCC--CCCCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHH
Q 006897 152 --AQED--NLLPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIEL 226 (627)
Q Consensus 152 --~Q~~--~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~ 226 (627)
+|++ .+.+.+ +...++-..+.+.... ...+...++.+++++++|.. .... +. .|--|..-..+-++
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~--gepp-~~-----~gypP~~fS~l~~l 298 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAA--GEPP-AR-----AGYTPSVFSTLPKL 298 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCC--CCCc-cc-----cCCCCchhhHhHHH
Confidence 8875 344444 5555554443332211 23567788999999999841 1110 11 11112222223333
Q ss_pred HHHHHH-cCC-C----EEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 227 LASMAK-AKQ-R----TVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 227 L~~l~~-~~g-~----Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
+.+..+ +.| . ||++..+|++. -.+|.+.-+-+|+|+-+-..
T Consensus 299 lERag~~~~GSITai~tVl~~gdD~~d---pi~d~~~~i~dg~ivLsr~l 345 (442)
T PRK06315 299 LERSGASDKGTITAFYTVLVAGDDMNE---PVADEVKSILDGHIVLSNAL 345 (442)
T ss_pred HHHhcCCCCcceeeeEEEEecCCCCCc---ccHHHhhhhcceEEEEeccH
Confidence 333211 123 2 34445556652 46899999999999876543
No 448
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.29 E-value=3e-07 Score=92.48 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=76.7
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCCccceEEECCccCCChhhhc---ccEEEEccCCCCCCCCCHHHHHH
Q 006897 93 EARDSEILAVVGPSGTGKSSL-LRIISGRVRDQDFDPRSITVNCHQIKKPAQLR---KICGFVAQEDNLLPLLTVKETLM 168 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTL-l~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r---~~ig~v~Q~~~l~~~lTV~e~l~ 168 (627)
.+++|+++.|.|||||||||| ++.+++..++.. ..+++.... .+.++. +..|+-.++..... ++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~---~~~yi~~e~--~~~~~~~~~~~~g~~~~~~~~~~------~l~ 88 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY---SVSYVSTQL--TTTEFIKQMMSLGYDINKKLISG------KLL 88 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC---cEEEEeCCC--CHHHHHHHHHHhCCchHHHhhcC------cEE
Confidence 379999999999999999999 799998766532 445555332 112211 22333221110000 000
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCC----CHHHHHHHHHHHHHHHHcCCCEEEEEccC
Q 006897 169 FSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGL----DSTSALQVIELLASMAKAKQRTVVLSIHQ 244 (627)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgL----D~~~~~~i~~~L~~l~~~~g~Tii~~tH~ 244 (627)
+. ..........+.++.+.++++.....+ .+..+-.+ |++++ |+....++.+.+++++++ |.|+++++|.
T Consensus 89 ~~-~~~~~~~~~~~~~~~l~~il~~~~~~~-~~~lVIDe---~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~t~~~ 162 (230)
T PRK08533 89 YI-PVYPLLSGNSEKRKFLKKLMNTRRFYE-KDVIIIDS---LSSLISNDASEVAVNDLMAFFKRISSL-NKVIILTANP 162 (230)
T ss_pred EE-EecccccChHHHHHHHHHHHHHHHhcC-CCEEEEEC---ccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEEEecc
Confidence 00 000000011223344555555432210 11111111 55655 888888999999999764 7777665543
Q ss_pred ccH------HHHHHhhhheeec
Q 006897 245 PSY------RILQYISKFLILS 260 (627)
Q Consensus 245 ~~~------~i~~~~D~i~vL~ 260 (627)
... .+..++|-++.|+
T Consensus 163 ~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 163 KELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cccccccceeEEEeeeEEEEEE
Confidence 210 0123456666665
No 449
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.29 E-value=0.00026 Score=72.68 Aligned_cols=164 Identities=16% Similarity=0.264 Sum_probs=92.5
Q ss_pred HHHHHhcCCC--------CChHHHHHHHHHHHHHHHHH---HHHH-hhh--hhhccccccccHHHHHHHHHHHHHHHH--
Q 006897 423 VLMKEASREA--------YRISSYLIANTIVFLPFLFV---VSLL-FAI--PVYWIVGLNPSIEAFVFFIFVVWLIVL-- 486 (627)
Q Consensus 423 v~~rE~~~~~--------Y~~~~y~la~~l~~lp~~~~---~~~~-f~~--i~Y~~~gl~~~~~~f~~f~~~~~l~~~-- 486 (627)
.+.+|+++|. ++...++++|.++.+...++ ..++ +.+ ......|.+.+...+....+...+..+
T Consensus 89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (277)
T PF12679_consen 89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV 168 (277)
T ss_pred HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 4556666553 56788999999998877432 1111 111 111223445555555554443333333
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccc-CCCCCcchh-----hhhhhhchhHHHHHHHHHHHhCCCCc
Q 006897 487 -MASSLVLFLSAISPDFISGNSLICTVLGAFFLFSGYFI-PKEYIPKYW-----IFMYYISLYRYPLDSLLTNEYWSARG 559 (627)
Q Consensus 487 -~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i-~~~~ip~~~-----~W~~yiSp~~Y~~~~l~~nef~~~~~ 559 (627)
+..+++.++|+++++...|..+...++........... ..++ +.+. ..+.+++|..+ ++.+......+..
T Consensus 169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~- 245 (277)
T PF12679_consen 169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIAN-SEALPWVISPNLSFLSPFSP-FNLLIGSILGGGF- 245 (277)
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHhHHHHcChHHH-HHHHHHHhhcccc-
Confidence 45899999999999998888877765554433333322 1111 1122 23466666553 2222221111100
Q ss_pred cccccccCCCCCCCCCcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhh
Q 006897 560 ECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRR 621 (627)
Q Consensus 560 ~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~ 621 (627)
.....|.++++++++.+++.++++..+++|
T Consensus 246 --------------------------------~~~~~~~~~~~~~~~~~v~l~la~~~F~rr 275 (277)
T PF12679_consen 246 --------------------------------VWLSTWPSLLILLAYTLVFLALAYYRFQRR 275 (277)
T ss_pred --------------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 004467889999999999999999666554
No 450
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.27 E-value=1.2e-06 Score=92.12 Aligned_cols=150 Identities=24% Similarity=0.317 Sum_probs=94.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE--ECCccCC---Chhhhccc----------EEEEccCCCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT--VNCHQIK---KPAQLRKI----------CGFVAQEDNLLP 159 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~--i~g~~~~---~~~~~r~~----------ig~v~Q~~~l~~ 159 (627)
.+|++.+++|.||-||||-+++++|.++|.- |.-. .++.++. ...++... .-.=||.-..+|
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl---g~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC---CCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 5799999999999999999999999999863 2110 0011110 00111100 001122111111
Q ss_pred C---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc----CCcCCccccC------------------CCCC
Q 006897 160 L---LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA----GSFVGDEENR------------------GISG 214 (627)
Q Consensus 160 ~---lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~~gGe~qr------------------Ptsg 214 (627)
. .+|.++|. +...++..+++++.+.|+... +.++|||.|| |.+-
T Consensus 175 r~~k~~v~~~l~-----------~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 175 RAVKGTVGSLLD-----------RKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHHHH-----------HHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 1 13333322 122233456677777776544 4567998888 8899
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 215 LDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 215 LD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
||...+..--..++.+.. .+.=||++.||++. +.-+.|-+.+|.
T Consensus 244 LDVKQRLkaA~~IRsl~~-p~~YiIVVEHDLsV-LDylSDFiCcLY 287 (592)
T KOG0063|consen 244 LDVKQRLKAAITIRSLIN-PDRYIIVVEHDLSV-LDYLSDFICCLY 287 (592)
T ss_pred chHHHhhhHHHHHHHhhC-CCCeEEEEEeechH-HHhhhcceeEEe
Confidence 999999999999999976 47889999999983 444678777775
No 451
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.22 E-value=0.00092 Score=68.44 Aligned_cols=240 Identities=14% Similarity=0.120 Sum_probs=145.7
Q ss_pred cHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHhhccCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006897 341 LILYEIMVLCSRFWKIIYRTKQL-FLARTMQALVGGFGLGSVYVRVRKDE---AGVAERLGLFAFSLSFLLSSTVEALPI 416 (627)
Q Consensus 341 ~~~~q~~~l~~R~~~~~~Rd~~~-~~~r~~~~~~~~l~~G~~f~~~~~~~---~~~~~~~g~~ff~~~~~~~~~~~~i~~ 416 (627)
..++....|.+|+++.-+|+... .+--++..+++.++.+.+|-.+-... --..--.|.+.+.. ...+.......
T Consensus 15 ~~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~~~~l~~G~~~w~f--~~~~i~~~~~s 92 (263)
T COG1682 15 KYRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNFLAYLLAGLILWFF--FSEAISEGAGS 92 (263)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH--HHHHHHhHHHH
Confidence 34667889999999998887632 12233444444444444443332211 11222223221111 11111222233
Q ss_pred HHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006897 417 YLQERRVLMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVGLNPSIEAFVFFIFVVWLIVLMASSLVLFLS 496 (627)
Q Consensus 417 ~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~ 496 (627)
+.....++.|- -.++..+.+++++.++-..++..++....+-+.-+.+ ...+......+.+..+.+.++|+++|
T Consensus 93 ~~~n~~li~k~----~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~a 166 (263)
T COG1682 93 VVANAALIKKI----NFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLILA 166 (263)
T ss_pred hhhhHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444332 2489999999999998887777666655555555544 34455566677777777788888888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCCCCccccccccCCCCCCCCCc
Q 006897 497 AISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWSARGECFSWQKYNNVDGDHFS 576 (627)
Q Consensus 497 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~~~~~C~~~~~~~~~~~~~~~ 576 (627)
.++.-+.=-.-+.+.++-+++..+|.+-+.+.+|..++|+.++||+.+-.|.+=..-+.+..
T Consensus 167 ~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~~------------------ 228 (263)
T COG1682 167 SLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGDV------------------ 228 (263)
T ss_pred hHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCCc------------------
Confidence 87655443334455566678888999999999999999999999999999987554443321
Q ss_pred ccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006897 577 KCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASK 624 (627)
Q Consensus 577 ~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 624 (627)
..+.+....+++.++..+++++..++.+|+
T Consensus 229 ------------------~~~~~~~~~~~~~li~l~vg~~~~~~~~~~ 258 (263)
T COG1682 229 ------------------PDLHLLVYILLLTLILLFVGLLLFRKFRKR 258 (263)
T ss_pred ------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 023345555556666667777777666554
No 452
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.21 E-value=1e-06 Score=96.81 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=62.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHH
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
.++++.+..+++|++++++||||+||||++..|++.+.... |. ++|++|.+|. ...++.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---G~---------------~kV~LI~~Dt---~RigA~ 302 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRH---GA---------------SKVALLTTDS---YRIGGH 302 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhc---CC---------------CeEEEEeCCc---cchhHH
Confidence 35677788889999999999999999999999998764321 21 2478888876 346899
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 199 (627)
|+|.+.+.... .+.....+..+...+..++.+.
T Consensus 303 EQLr~~AeilG--Vpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 303 EQLRIYGKILG--VPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred HHHHHHHHHhC--CCeeccCCchhHHHHHHhccCC
Confidence 99998765432 2222222233344455566544
No 453
>PRK01889 GTPase RsgA; Reviewed
Probab=98.19 E-value=2.9e-06 Score=90.89 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=81.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKET 166 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~ 166 (627)
++.+.-.+++|++++|+|+||+|||||++.|+|..++. .|+|.+++.... ....++.+++++|+..++++ ....+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~-~tt~~~~l~~l~~~~~l~Dt-pG~~~ 259 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGR-HTTTHRELHPLPSGGLLIDT-PGMRE 259 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCc-chhhhccEEEecCCCeecCC-Cchhh
Confidence 45555567899999999999999999999999998875 399998775422 22345679999998877754 55555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccc-cC--CCCCCCHHHHHHHHHHHHHHH
Q 006897 167 LMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEE-NR--GISGLDSTSALQVIELLASMA 231 (627)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~-qr--PtsgLD~~~~~~i~~~L~~l~ 231 (627)
+.+... ...-......+.++.+.+...+|.+..--|-. +. -..+|+..--....++++++.
T Consensus 260 ~~l~~~----~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~~~r~~~Y~~l~~e~~ 323 (356)
T PRK01889 260 LQLWDA----EDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELDERRLQSYRKLQREQA 323 (356)
T ss_pred hcccCc----hhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 554210 00001112234445555555555443211100 00 123466555555556666654
No 454
>PRK08149 ATP synthase SpaL; Validated
Probab=98.19 E-value=2.1e-06 Score=92.96 Aligned_cols=73 Identities=14% Similarity=0.275 Sum_probs=57.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hh----hhcccEEEEccCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PA----QLRKICGFVAQEDN 156 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~----~~r~~ig~v~Q~~~ 156 (627)
+.++++++ +++.+||+++|+|+||+|||||+++|++...++....|.|..+|+++.. .+ ..++++++|+....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 35699999 9999999999999999999999999999887754334888888887632 11 12367888887543
No 455
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.17 E-value=1.1e-05 Score=76.57 Aligned_cols=50 Identities=16% Similarity=0.369 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hhhheeecCCe
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-ISKFLILSRGS 263 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D~i~vL~~G~ 263 (627)
|-++|.|.-+.+++..|+++++. |.-+||.||.|- +..+ -.+|+-++.+.
T Consensus 155 PEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPi--LlAiP~A~I~~~~~~g 205 (233)
T COG3910 155 PEAALSPSRQLELLAILRDLADS-GAQIIIATHSPI--LLAIPGAEIYEISESG 205 (233)
T ss_pred ccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChh--heeCCCcEEEEEecCC
Confidence 88999999999999999999874 889999999874 3332 23556566554
No 456
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.16 E-value=2.5e-06 Score=66.87 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=30.2
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 87 LKSVSFEARD-SEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 87 L~~vsl~i~~-Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++-++++.+ |+++.|.||||||||||+.+|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4567778876 579999999999999999999755543
No 457
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.14 E-value=4e-06 Score=73.21 Aligned_cols=49 Identities=29% Similarity=0.594 Sum_probs=43.6
Q ss_pred cccccchHHHHh-hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006897 576 SKCLLTGNDVLK-SRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASK 624 (627)
Q Consensus 576 ~~c~~~G~~~L~-~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 624 (627)
+...++|+++|+ +|++..+++|+|++|+++|+++|.++.++++.+.+..
T Consensus 27 G~~~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~ 76 (103)
T PF06422_consen 27 GSTYVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFE 76 (103)
T ss_pred CccEEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445578999997 7999999999999999999999999999999887643
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.09 E-value=1.3e-06 Score=86.30 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=26.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999998764
No 459
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.05 E-value=5.7e-06 Score=88.33 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=47.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceee-----------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILK-----------SVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~-----------~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++|+||++.|++. +.+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+..
T Consensus 130 ri~Fe~LTf~YP~e--------------r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLTPLYPNE--------------RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEeeecCCCc--------------cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 58999999999532 35786 99999999999999999999999999999987643
No 460
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.05 E-value=6.8e-06 Score=82.64 Aligned_cols=75 Identities=15% Similarity=0.306 Sum_probs=50.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccce----EEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHH
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS----ITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMF 169 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~----i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~ 169 (627)
-.+..++||.||||||||||.+.|++++++.. |. +.+++.. .+...++..|++++... ...+++.+.+.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~---g~~~v~i~~D~~~--~~~~~~~~~g~~~~~~~-~~~~d~~~~~~~ 103 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG---ELPAIQVPMDGFH--LDNAVLDAHGLRPRKGA-PETFDVAGLAAL 103 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc---CCceEEEeccccc--CCHHHHHhcccccccCC-CCCCCHHHHHHH
Confidence 34578999999999999999999999998764 66 4444432 12233344677776433 355677777766
Q ss_pred HHHhc
Q 006897 170 SANFR 174 (627)
Q Consensus 170 ~~~~~ 174 (627)
...++
T Consensus 104 l~~l~ 108 (229)
T PRK09270 104 LRRLR 108 (229)
T ss_pred HHHHH
Confidence 54443
No 461
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.03 E-value=4.8e-06 Score=80.89 Aligned_cols=52 Identities=31% Similarity=0.503 Sum_probs=38.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh--hhhcccEEEEccC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP--AQLRKICGFVAQE 154 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~--~~~r~~ig~v~Q~ 154 (627)
|++++|+||||||||||+++|++...+ .+.+++..+... ...+..+++++|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT------QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC------eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999998643 355555543221 2344567788776
No 462
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.02 E-value=4.4e-06 Score=87.89 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=55.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh--------hhhcccEEEEccCCCCCCCCCHHHH
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP--------AQLRKICGFVAQEDNLLPLLTVKET 166 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~--------~~~r~~ig~v~Q~~~l~~~lTV~e~ 166 (627)
++|++++++||||+||||++..|++.+.+.+ ++|.+.+.|.... ...++.+.+++|.....|..++.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g---~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG---KKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 5799999999999999999999999987643 7888877664211 1234568999987666666677788
Q ss_pred HHHHH
Q 006897 167 LMFSA 171 (627)
Q Consensus 167 l~~~~ 171 (627)
+....
T Consensus 189 l~~~~ 193 (318)
T PRK10416 189 IQAAK 193 (318)
T ss_pred HHHHH
Confidence 76543
No 463
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.01 E-value=5.5e-06 Score=85.76 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=51.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC-ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK-KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~-~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~ 174 (627)
.-.++||.||||||||||+++|.+++.... ..|.+.+.+.+-. .....++..++. |+..+.+.+++.+.+.+-..++
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~-~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWP-EHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcC-CCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 346999999999999999999999986211 1267666444321 122233445654 6666677788888887765443
No 464
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.99 E-value=0.00013 Score=86.41 Aligned_cols=58 Identities=19% Similarity=0.114 Sum_probs=49.3
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHH---------HHhhhheeecCCeEEeeCCH
Q 006897 211 GISGL-DSTSALQVIELLASMAKAKQRTVVLSIHQPSYRIL---------QYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 211 PtsgL-D~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~---------~~~D~i~vL~~G~iv~~G~~ 270 (627)
|..+| |+..+..+.+.++++++ .|.+++++||+++. +. +.||+.++|.+|++...|..
T Consensus 661 ~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 661 AWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISD-AERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred chhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 77899 79999999999999976 58899999999983 54 57999999999998776644
No 465
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.96 E-value=1.6e-06 Score=90.81 Aligned_cols=129 Identities=16% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHhhHH--HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc---ccccHHHHHHHHHHHHHHHHHHHHH
Q 006897 417 YLQERRV--LMKEASREAYRISSYLIANTIVFLPFLFVVSLLFAIPVYWIVG---LNPSIEAFVFFIFVVWLIVLMASSL 491 (627)
Q Consensus 417 ~~~er~v--~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~g---l~~~~~~f~~f~~~~~l~~~~~~s~ 491 (627)
..+||.- ..|-+.+| .+...|++++++..+...++..+++.++ +.| ++.. .++..++.+++..++..++
T Consensus 182 i~~ek~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~ 255 (344)
T PF12698_consen 182 IVEEKESGTRERLLSSG-VSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISF 255 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhhhhhHhhhccc-CCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHH
Confidence 3455544 33333455 4888999999999999999888877764 334 4444 4555667778888889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHH
Q 006897 492 VLFLSAISPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLT 551 (627)
Q Consensus 492 ~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~ 551 (627)
+.+++.++++...|..+++++..+++.++|.+.+.+++|.+++|+.++.|..|..+++..
T Consensus 256 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~ 315 (344)
T PF12698_consen 256 GFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRN 315 (344)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999998888887776777777777788999999999999999998776643
No 466
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.96 E-value=1.4e-05 Score=87.20 Aligned_cols=77 Identities=13% Similarity=0.219 Sum_probs=55.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhh--------cccEEEEccC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL--------RKICGFVAQE 154 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~--------r~~ig~v~Q~ 154 (627)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.+...|.+-.+..++ ....+.+.++
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~---~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~ 207 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADV---NVIALIGERGREVREFIEHHLGEEGRKRSVLVVS 207 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCE---EEEEEEccCCcCHHHHHHHHhccccccceEEEec
Confidence 45699999 9999999999999999999999999999988753 7776654432211111 1235677777
Q ss_pred CCCCCCCCH
Q 006897 155 DNLLPLLTV 163 (627)
Q Consensus 155 ~~l~~~lTV 163 (627)
....|.++.
T Consensus 208 ~s~~p~~~r 216 (422)
T TIGR02546 208 TSDRPSLER 216 (422)
T ss_pred cccCCHHHH
Confidence 666655433
No 467
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.95 E-value=6.1e-05 Score=74.02 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=65.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM 178 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 178 (627)
++.|.||+||||||+++.|.+.+.+.. .|.|.....++ + .......+++.|...-....+..+.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~--~~~i~t~e~~~-E-~~~~~~~~~i~q~~vg~~~~~~~~~i~---------- 68 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNK--THHILTIEDPI-E-FVHESKRSLINQREVGLDTLSFENALK---------- 68 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcC--CcEEEEEcCCc-c-ccccCccceeeecccCCCccCHHHHHH----------
Confidence 789999999999999999988876432 26666544442 1 011122345555321111112222221
Q ss_pred CHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 179 SHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 179 ~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
..+ .. ..+..+-||-+ |+.....+ + +.+. .|..++.++|..+ ..+..||++.
T Consensus 69 ----------~aL---r~--~pd~ii~gEir------d~e~~~~~---l-~~a~-~G~~v~~t~Ha~~--~~~~~~Rl~~ 120 (198)
T cd01131 69 ----------AAL---RQ--DPDVILVGEMR------DLETIRLA---L-TAAE-TGHLVMSTLHTNS--AAKTIDRIID 120 (198)
T ss_pred ----------HHh---cC--CcCEEEEcCCC------CHHHHHHH---H-HHHH-cCCEEEEEecCCc--HHHHHhHHHh
Confidence 111 11 12222334422 54433322 3 3343 5889999999987 3577899987
Q ss_pred ec
Q 006897 259 LS 260 (627)
Q Consensus 259 L~ 260 (627)
+.
T Consensus 121 l~ 122 (198)
T cd01131 121 VF 122 (198)
T ss_pred hc
Confidence 74
No 468
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.95 E-value=1.3e-05 Score=88.33 Aligned_cols=151 Identities=14% Similarity=0.145 Sum_probs=84.4
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhc---ccEEEEccCCCCCCCC
Q 006897 86 ILKSV-SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR---KICGFVAQEDNLLPLL 161 (627)
Q Consensus 86 iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r---~~ig~v~Q~~~l~~~l 161 (627)
-||.+ ..-+.+|+++.|.|++|+|||||+..++......+ ..-+++.+++- ..+++ +++++..++..++...
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~ra~rlg~~~~~l~~~~e~ 157 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKMRAIRLGLPEPNLYVLSET 157 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHHHHHHcCCChHHeEEcCCC
Confidence 46665 35799999999999999999999999987654332 12356666542 12221 2345433322222211
Q ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-ccCCcC---CccccCCCCCCCHHHHHHHHHHHHHHHHcCCCE
Q 006897 162 TVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VAGSFV---GDEENRGISGLDSTSALQVIELLASMAKAKQRT 237 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~---gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~T 237 (627)
++ +.+.+.++..+.+- +.|... -.+. ..+.=+....++++..|.+++++.|.|
T Consensus 158 ~~---------------------~~I~~~i~~~~~~~vVIDSIq~l~~~~~--~~~~g~~~q~r~~~~~L~~~ak~~giT 214 (454)
T TIGR00416 158 NW---------------------EQICANIEEENPQACVIDSIQTLYSPDI--SSAPGSVSQVRECTAELMRLAKTRGIA 214 (454)
T ss_pred CH---------------------HHHHHHHHhcCCcEEEEecchhhccccc--ccCCCCHHHHHHHHHHHHHHHHHhCCE
Confidence 11 12222233322211 111110 0000 000002234566777788888889999
Q ss_pred EEEEccCccH-------HHHHHhhhheeecCCe
Q 006897 238 VVLSIHQPSY-------RILQYISKFLILSRGS 263 (627)
Q Consensus 238 ii~~tH~~~~-------~i~~~~D~i~vL~~G~ 263 (627)
+++++|.... .+.+++|.|+.|+.++
T Consensus 215 vllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 215 IFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred EEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 9999996431 1567899999998654
No 469
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.94 E-value=1.3e-05 Score=84.20 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=42.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
.++++++ +.+.+||.++|+|+||+|||||+++|+|...++. |.+..-|+
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---~vi~~iGe 105 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADV---NVIALIGE 105 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCE---EEEEEEec
Confidence 4689999 9999999999999999999999999999988753 66655553
No 470
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.93 E-value=2.7e-05 Score=75.01 Aligned_cols=27 Identities=41% Similarity=0.727 Sum_probs=24.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
|++++|+||||||||||++.|++.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 678999999999999999999998654
No 471
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.93 E-value=9.9e-06 Score=87.99 Aligned_cols=64 Identities=13% Similarity=0.279 Sum_probs=51.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++.++++..+. ...++++++ +++.+||.++|+|+||+|||||+++|+|..+++. |.+.+.|
T Consensus 129 ~~~r~~v~~~l~--------------tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~---~vi~~iG 190 (433)
T PRK07594 129 AMVRQPITQPLM--------------TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS---NVLVLIG 190 (433)
T ss_pred ceeccCHhheeC--------------CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCE---EEEEEEC
Confidence 356666666653 235699999 9999999999999999999999999999988753 7777666
Q ss_pred cc
Q 006897 136 HQ 137 (627)
Q Consensus 136 ~~ 137 (627)
+.
T Consensus 191 eR 192 (433)
T PRK07594 191 ER 192 (433)
T ss_pred CC
Confidence 54
No 472
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.93 E-value=5.4e-05 Score=88.86 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 211 GISGLDSTSALQVIE-LLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 211 PtsgLD~~~~~~i~~-~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
|++|+|+.....+.. ++..+.+ .|.++|++||+++. ....+|+..+ .++.+.++
T Consensus 416 ~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el-~~~~~~~~~v-~~~~~~~d 470 (782)
T PRK00409 416 LGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKEL-KALMYNREGV-ENASVEFD 470 (782)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHH-HHHHhcCCCe-EEEEEEEe
Confidence 889999999988865 5666654 58999999999763 3334454444 35566553
No 473
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.92 E-value=7.8e-06 Score=88.76 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=55.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh-----hhhcccEEEEccCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP-----AQLRKICGFVAQEDN 156 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~-----~~~r~~ig~v~Q~~~ 156 (627)
.+++|.+ +++.+|++++|+|+||+|||||+++|+|+.+++....|.|..+|+++.+. ..-.+..++|+|+..
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 4567766 99999999999999999999999999999887633348898888876321 111245788888643
No 474
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=97.92 E-value=0.0077 Score=61.88 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhccccCCCCCcchhhhhhhhchhHHHHHHHHHHHhCC
Q 006897 480 VVWLIVLMASSLVLFLSAI---SPDFISGNSLICTVLGAFFLFSGYFIPKEYIPKYWIFMYYISLYRYPLDSLLTNEYWS 556 (627)
Q Consensus 480 ~~~l~~~~~~s~~~~i~~~---~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~Y~~~~l~~nef~~ 556 (627)
.+++..+.+.++|+++|++ .+|.. -+.++++-+++-.+|.+-+.+.+|+.++|+.+.||+.+..|+.=..-+++
T Consensus 154 ~~ll~~l~~~glglils~l~v~~rDi~---~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~~ 230 (264)
T PRK15176 154 GMVIAWLLGLSFGYFCDALSERFPLVY---KAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEG 230 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHH---HHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhcC
Confidence 3344555566777776666 45554 44556666788889988889999999999999999999999875544433
Q ss_pred CCccccccccCCCCCCCCCcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006897 557 ARGECFSWQKYNNVDGDHFSKCLLTGNDVLKSRGLEKDTRWVNVGVMLAFFLFYRVLCWIILSRRASK 624 (627)
Q Consensus 557 ~~~~C~~~~~~~~~~~~~~~~c~~~G~~~L~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 624 (627)
.. ..|.++...+++.++..+++++..++.+++
T Consensus 231 ~~------------------------------------~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~ 262 (264)
T PRK15176 231 YH------------------------------------SLYLEPFYPLAFSATLFLAGLIFHLICDTE 262 (264)
T ss_pred cC------------------------------------ccccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 112345667777778888887777766654
No 475
>PLN02796 D-glycerate 3-kinase
Probab=97.88 E-value=4.2e-06 Score=87.94 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=45.0
Q ss_pred ceeeceEEEE---eCCeE-----EEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 85 HILKSVSFEA---RDSEI-----LAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 85 ~iL~~vsl~i---~~Ge~-----~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
.++++++..+ ++|+. +||.|+||||||||++.|.+++++.+...|.|.++|..+
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 4788999887 67876 999999999999999999999986533348888888764
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.85 E-value=2.4e-06 Score=95.39 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=83.5
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCCCccceEEECCccCCChhhhc---ccEEEEccCCCCC
Q 006897 85 HILKSV-SFEARDSEILAVVGPSGTGKSSLLRII--SGRVRDQDFDPRSITVNCHQIKKPAQLR---KICGFVAQEDNLL 158 (627)
Q Consensus 85 ~iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L--~Gl~~~~~~~~G~i~i~g~~~~~~~~~r---~~ig~v~Q~~~l~ 158 (627)
.-||.+ ..-+.+|..+.|.||+|||||||..-. .|..+..+ .-+++.... ++.+++ +..|+-.++..--
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge---~~lyvs~eE--~~~~l~~~~~~~G~~~~~~~~~ 82 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE---PGVFVTFEE--SPQDIIKNARSFGWDLQKLVDE 82 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEec--CHHHHHHHHHHcCCCHHHHhhc
Confidence 346775 567999999999999999999999876 45544222 344444332 222222 3355544421100
Q ss_pred CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC----CCC----CCC--HHHHHHHH
Q 006897 159 PLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR----GIS----GLD--STSALQVI 224 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr----Pts----gLD--~~~~~~i~ 224 (627)
..+-+.+. . +. .....+++.+++++..+ ...+|++|| +.+ ..| ...++.+.
T Consensus 83 g~l~~~~~---~--------~~----~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~ 147 (484)
T TIGR02655 83 GKLFILDA---S--------PD----PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIF 147 (484)
T ss_pred CceEEEec---C--------ch----hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHH
Confidence 00000000 0 00 00001112222222221 222566666 222 223 34677888
Q ss_pred HHHHHHHHcCCCEEEEEccCccHH-------H-HHHhhhheeec
Q 006897 225 ELLASMAKAKQRTVVLSIHQPSYR-------I-LQYISKFLILS 260 (627)
Q Consensus 225 ~~L~~l~~~~g~Tii~~tH~~~~~-------i-~~~~D~i~vL~ 260 (627)
++++.+++ .|+|+|+++|+++.. + ..+||.|+.|+
T Consensus 148 ~Li~~L~~-~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 148 RLVARLKQ-IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHH-CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 89988865 699999999987520 1 45789999886
No 477
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.82 E-value=4.8e-06 Score=82.67 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHH-HHHHcCCCC
Q 006897 99 ILAVVGPSGTGKSSLL-RIISGRVRD 123 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl-~~L~Gl~~~ 123 (627)
.++|+|+||||||||+ +.+.|..++
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~ 36 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEK 36 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 4799999999999999 688887654
No 478
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.82 E-value=2.4e-05 Score=85.31 Aligned_cols=51 Identities=16% Similarity=0.356 Sum_probs=45.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.+.+.|+.
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~---~vi~~iGer 200 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDV---NVIALIGER 200 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCe---EEEEEEccC
Confidence 45699999 9999999999999999999999999999988753 888877754
No 479
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.81 E-value=2e-05 Score=87.53 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=46.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
...+++++++.+..|+.++|+||||+|||||++.|.|+++|.. |++.+++..+
T Consensus 196 q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~---g~e~le~~~i 248 (506)
T PRK09862 196 QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLS---NEEALESAAI 248 (506)
T ss_pred cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCC---CcEEEecchh
Confidence 3458999999999999999999999999999999999999864 8888777554
No 480
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.81 E-value=0.0001 Score=78.80 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=70.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC-ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHh
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK-KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF 173 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~-~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~ 173 (627)
++|.+++|.||+||||||+|++|++.+.+.....+.|.....++. ..+..+...+.+.|...--...+..+.+.-
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~---- 207 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRN---- 207 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHH----
Confidence 588999999999999999999999987532111134544333321 112233345777776421111122222211
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh
Q 006897 174 RLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI 253 (627)
Q Consensus 174 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~ 253 (627)
. |....|...-||.+ |..+....++. + ..|..++-+.|-.+ +....
T Consensus 208 ----------------a-----LR~~Pd~i~vGEiR------d~et~~~al~a----a-~tGh~v~tTlHa~~--~~~~i 253 (358)
T TIGR02524 208 ----------------A-----LRRKPHAILVGEAR------DAETISAALEA----A-LTGHPVYTTLHSSG--VAETI 253 (358)
T ss_pred ----------------H-----hccCCCEEeeeeeC------CHHHHHHHHHH----H-HcCCcEEEeeccCC--HHHHH
Confidence 1 11123333335544 55544443332 2 25778999999766 46777
Q ss_pred hhheee
Q 006897 254 SKFLIL 259 (627)
Q Consensus 254 D~i~vL 259 (627)
+|++-+
T Consensus 254 ~Rl~~~ 259 (358)
T TIGR02524 254 RRLVGS 259 (358)
T ss_pred HHHHHh
Confidence 777654
No 481
>PTZ00035 Rad51 protein; Provisional
Probab=97.79 E-value=4.3e-05 Score=81.17 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=79.3
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CCccceE-EECCccCCChhhhcccEEEEccCCCCCCC
Q 006897 86 ILKSV-SFEARDSEILAVVGPSGTGKSSLLRIISGRVR-DQ--DFDPRSI-TVNCHQIKKPAQLRKICGFVAQEDNLLPL 160 (627)
Q Consensus 86 iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~-~~--~~~~G~i-~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~ 160 (627)
-||.+ ..=+++|+++.|.||||||||||+..++.... |. ....|.+ +++++...++++ +..+.|...+.+.
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er----i~~ia~~~g~~~~ 181 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER----IVQIAERFGLDPE 181 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH----HHHHHHHhCCChH
Confidence 46653 56799999999999999999999999976443 21 1123555 777765322222 3333555444444
Q ss_pred CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc----ccCCcCCccccCCCCCC-CHHH----HHHHHHHHHHHH
Q 006897 161 LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH----VAGSFVGDEENRGISGL-DSTS----ALQVIELLASMA 231 (627)
Q Consensus 161 lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~gGe~qrPtsgL-D~~~----~~~i~~~L~~l~ 231 (627)
++.+|+.+.. ..+.++..+.+.++.+.+.-.. +.|....=-+. -..|- +... -.+++..|++++
T Consensus 182 -~~l~nI~~~~-----~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~-~~~~~~~~~~r~~~l~~~~~~L~~la 254 (337)
T PTZ00035 182 -DVLDNIAYAR-----AYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRV-DYSGRGELAERQQHLGKFLRALQKLA 254 (337)
T ss_pred -hHhhceEEEc-----cCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhh-hccCcccHHHHHHHHHHHHHHHHHHH
Confidence 6777775531 1122333333333332221110 01111100000 01111 1111 234667788888
Q ss_pred HcCCCEEEEEccCc
Q 006897 232 KAKQRTVVLSIHQP 245 (627)
Q Consensus 232 ~~~g~Tii~~tH~~ 245 (627)
++.+.|||++-|-.
T Consensus 255 ~~~~vavvvtNqv~ 268 (337)
T PTZ00035 255 DEFNVAVVITNQVM 268 (337)
T ss_pred HHcCcEEEEecceE
Confidence 88899999887743
No 482
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.78 E-value=7.8e-06 Score=77.74 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=41.0
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhc-ccEEEEccCCCCCCCCCHHHHHHHH
Q 006897 103 VGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR-KICGFVAQEDNLLPLLTVKETLMFS 170 (627)
Q Consensus 103 iGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~ 170 (627)
+|+||||||||++.|++.+ |.+.++|..+......+ ...|+.+|+....+.+++.++..+.
T Consensus 1 ~G~sGsGKSTla~~la~~l-------~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 62 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL-------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFA 62 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh-------CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHH
Confidence 6999999999999999886 55677774422112223 3457778876555556666666554
No 483
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.77 E-value=1.9e-05 Score=77.68 Aligned_cols=28 Identities=36% Similarity=0.644 Sum_probs=26.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
++|++++|+||||||||||++.|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 484
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.77 E-value=1.6e-05 Score=78.11 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=41.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQE 154 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~ 154 (627)
++|++++|+|+||||||||.+.|++.+.+.+ .|.+.++|.++. ..+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~--~~~~~ld~d~~~--~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELG--VSTYLLDGDNVR--HGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCC--CCEEEEcCEeHH--hhhhhcCCcCccc
Confidence 6789999999999999999999999876532 378999886632 1222335565554
No 485
>PRK13695 putative NTPase; Provisional
Probab=97.77 E-value=3e-05 Score=74.45 Aligned_cols=51 Identities=10% Similarity=0.251 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|+.++|+. +.+.+.++.+ .|+++|+++|+.. +...+|++..+.+|++.+.-
T Consensus 107 ~~e~~~~~----~~~~l~~~~~-~~~~~i~v~h~~~--~~~~~~~i~~~~~~~i~~~~ 157 (174)
T PRK13695 107 KMELKSPK----FVKAVEEVLD-SEKPVIATLHRRS--VHPFVQEIKSRPGGRVYELT 157 (174)
T ss_pred cchhhhHH----HHHHHHHHHh-CCCeEEEEECchh--hHHHHHHHhccCCcEEEEEc
Confidence 34445543 4566666653 5889999999853 67889999999999997753
No 486
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.75 E-value=2.5e-05 Score=85.07 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=43.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+.+++|++ +.+.+||.++|+|+||+|||||+++|+|...++....|.|...+.+
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~e 208 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGRE 208 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHh
Confidence 46799999 9999999999999999999999999999877642222555555544
No 487
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.75 E-value=2.4e-05 Score=86.99 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=50.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHH
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMF 169 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~ 169 (627)
-++||.||||||||||++.|+++++ . .|.|.++|.. . ..+.+++.+|++..++..++.++|.-
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp-~---vgvIsmDdy~-~----~~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMP-S---IAVISMDNYN-D----SSRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCC-C---cEEEEEccee-c----chhhhCccCCChhhcchhHHHHHHHH
Confidence 4899999999999999999999974 2 3899998864 1 11235678888888887889898854
No 488
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.73 E-value=0.00011 Score=68.58 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=26.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+++|.||||+||||+++.+++...+.+ +.+.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKG---GKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcC---CEEEEEE
Confidence 478999999999999999998876532 5555543
No 489
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.70 E-value=5e-05 Score=82.48 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=44.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
..++++++ +.+.+|+.++|+|+||+|||||+++|++..+++. |.+...|++
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~---gvi~~~Ger 174 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADI---NVIALIGER 174 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCe---EEEEEEccc
Confidence 35689999 9999999999999999999999999999887753 777777765
No 490
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.69 E-value=4.2e-05 Score=83.07 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=44.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
...+++ .++++.+|+.++|+|+||+|||||+++|+|..+++. |.+.+.|+.
T Consensus 127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~---gvi~~iGer 177 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADV---VVIALVGER 177 (418)
T ss_pred ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCE---EEEEEEeee
Confidence 345776 699999999999999999999999999999988753 888777765
No 491
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.68 E-value=8.1e-05 Score=80.93 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=43.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.+++|++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---gvI~~iGer 193 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI---NVISLVGER 193 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe---EEEEeCCCC
Confidence 4588885 9999999999999999999999999999988753 888777765
No 492
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.67 E-value=6.5e-05 Score=78.19 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=52.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE---CCccCCC-hhhhcc-cEEEEccCCCC---C-
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV---NCHQIKK-PAQLRK-ICGFVAQEDNL---L- 158 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i---~g~~~~~-~~~~r~-~ig~v~Q~~~l---~- 158 (627)
+.+...+. +++++++|+||+|||||+|.|.|...+.. |++.. .|+.... ...++. ..+++.+.|.+ .
T Consensus 153 ~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~---g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~ 228 (287)
T cd01854 153 DELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLAT---GEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGL 228 (287)
T ss_pred HHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccc---cceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCC
Confidence 44444554 58999999999999999999999987653 77765 2333211 122222 26788888765 2
Q ss_pred CCCCHHHHHHHH
Q 006897 159 PLLTVKETLMFS 170 (627)
Q Consensus 159 ~~lTV~e~l~~~ 170 (627)
..++..|...+.
T Consensus 229 ~~~~~~~~~~~f 240 (287)
T cd01854 229 LHIDPEELAHYF 240 (287)
T ss_pred ccCCHHHHHHHh
Confidence 457777766654
No 493
>PRK00098 GTPase RsgA; Reviewed
Probab=97.65 E-value=0.00011 Score=77.01 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=46.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE---CCccCCChhhh--cccEEEEccCCCCC----CCCCHHHH
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV---NCHQIKKPAQL--RKICGFVAQEDNLL----PLLTVKET 166 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i---~g~~~~~~~~~--r~~ig~v~Q~~~l~----~~lTV~e~ 166 (627)
+|++++++|+||+|||||+|.|.|...+.. |+|.. .|+......++ ....+++.+.|.+. ..++..|.
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~---g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ 239 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKT---GEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEEL 239 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCC---cceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHH
Confidence 589999999999999999999999877643 88775 34332211111 12356887777654 33455444
Q ss_pred H
Q 006897 167 L 167 (627)
Q Consensus 167 l 167 (627)
.
T Consensus 240 ~ 240 (298)
T PRK00098 240 E 240 (298)
T ss_pred H
Confidence 3
No 494
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.64 E-value=8.5e-05 Score=80.67 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=89.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh----------hhhcccEEEEcc
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP----------AQLRKICGFVAQ 153 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~----------~~~r~~ig~v~Q 153 (627)
..+++.+ +.+.+||+++|+|+||+|||||+++|++..+++. +.+...|++-.+. ..+++.+-++-+
T Consensus 125 i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~---~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t 200 (411)
T TIGR03496 125 VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADV---VVVGLIGERGREVKEFIEDILGEEGLARSVVVAAT 200 (411)
T ss_pred EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCE---EEEEEEecChHHHHHHHHHHhhCCCcceEEEEEEC
Confidence 5689999 9999999999999999999999999999988753 5554444431110 112334445444
Q ss_pred CCC--C------CCCCCHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCccccCCcCCccccCCC-CCCCHHHHHHH
Q 006897 154 EDN--L------LPLLTVKETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTHVAGSFVGDEENRGI-SGLDSTSALQV 223 (627)
Q Consensus 154 ~~~--l------~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPt-sgLD~~~~~~i 223 (627)
.+. . +-.+|+.|+++.- .... ---+.-.+..++..++++. . || -|. .|-.+..-..+
T Consensus 201 sd~~~~~r~~a~~~a~tiAEyfr~~----G~~Vll~~Dsltr~A~A~REisl~--~-----ge--~P~~~gyp~~~f~~l 267 (411)
T TIGR03496 201 ADESPLMRLRAAFYATAIAEYFRDQ----GKDVLLLMDSLTRFAMAQREIALA--I-----GE--PPATKGYPPSVFAKL 267 (411)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC----CCCEEEEEeChHHHHHHHHHHHHh--c-----CC--CCCccCcCHHHHHHh
Confidence 322 1 1123333433321 0000 0001112233333443331 1 11 022 35666666666
Q ss_pred HHHHHHHHH--c-CC-CEEEEEccCccHHH-HHHhhhheeecCCeEEee
Q 006897 224 IELLASMAK--A-KQ-RTVVLSIHQPSYRI-LQYISKFLILSRGSVVHY 267 (627)
Q Consensus 224 ~~~L~~l~~--~-~g-~Tii~~tH~~~~~i-~~~~D~i~vL~~G~iv~~ 267 (627)
-+++.+..+ + .| .|.+-+..-+..++ .-.+|.+.-+-+|+|+-+
T Consensus 268 ~~l~ERag~~~~~~GSIT~~~tv~~~~dd~~dpi~~~~~~i~dg~ivLs 316 (411)
T TIGR03496 268 PQLVERAGNGEEGKGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLS 316 (411)
T ss_pred HHHHHHhcccCCCCcceeEEEEEEccCCCCCCcchhhhcccccEEEEEc
Confidence 666666543 1 23 45555444222111 235788888889998864
No 495
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.63 E-value=0.0003 Score=75.12 Aligned_cols=125 Identities=20% Similarity=0.231 Sum_probs=71.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHh
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF 173 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~ 173 (627)
..++.++.|.||+||||||+++.|.+.+.+. ..+.|.....++ + .........+.|...-....+..+-+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~tiEdp~-E-~~~~~~~~~i~q~evg~~~~~~~~~l------ 188 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITIEDPI-E-YVHRNKRSLINQREVGLDTLSFANAL------ 188 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEEcCCh-h-hhccCccceEEccccCCCCcCHHHHH------
Confidence 4578899999999999999999999876532 126666554442 1 01112223333322111111211111
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh
Q 006897 174 RLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI 253 (627)
Q Consensus 174 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~ 253 (627)
..+ |....|..+-||-+ |+.+....++ .+ ..|.+++.++|..+ .....
T Consensus 189 --------------~~~-----lr~~pd~i~vgEir------d~~~~~~~l~----aa-~tGh~v~~T~Ha~~--~~~~~ 236 (343)
T TIGR01420 189 --------------RAA-----LREDPDVILIGEMR------DLETVELALT----AA-ETGHLVFGTLHTNS--AAQTI 236 (343)
T ss_pred --------------HHh-----hccCCCEEEEeCCC------CHHHHHHHHH----HH-HcCCcEEEEEcCCC--HHHHH
Confidence 111 11233444456643 7777655444 23 35889999999887 45778
Q ss_pred hhheeec
Q 006897 254 SKFLILS 260 (627)
Q Consensus 254 D~i~vL~ 260 (627)
+|++-|-
T Consensus 237 ~Rl~~~~ 243 (343)
T TIGR01420 237 ERIIDVF 243 (343)
T ss_pred HHHHHhc
Confidence 9987663
No 496
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.62 E-value=5.4e-05 Score=82.11 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=36.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ 124 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~ 124 (627)
+..+++.+ +.+.+||.++|+|+||+|||||+++|++...++
T Consensus 149 Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 149 GVRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred cceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 35688888 999999999999999999999999999987654
No 497
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.62 E-value=5.6e-05 Score=75.51 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
++||.||||||||||.+.|++++.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999998864
No 498
>PRK05922 type III secretion system ATPase; Validated
Probab=97.60 E-value=9.5e-05 Score=80.38 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=42.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+.+++|.+ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.+..-|+.
T Consensus 144 GIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~---gvi~liGer 194 (434)
T PRK05922 144 GIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTI---NVIALIGER 194 (434)
T ss_pred Cceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCc---eEEEEeCCC
Confidence 34588887 9999999999999999999999999999887653 666555543
No 499
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.57 E-value=0.00023 Score=68.62 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=38.4
Q ss_pred CCCCCC---HHHHHHHHHHHHHHHHcCCCEEEEEccCccH--------HHHHHhhhheeec
Q 006897 211 GISGLD---STSALQVIELLASMAKAKQRTVVLSIHQPSY--------RILQYISKFLILS 260 (627)
Q Consensus 211 PtsgLD---~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~--------~i~~~~D~i~vL~ 260 (627)
|++.+| ...+..+.++++.+++ .|.|+|+++|+... .+..+||.++.|+
T Consensus 104 ~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 104 VSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 566777 7778888889988876 58999999997652 1567889998886
No 500
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.56 E-value=0.00074 Score=68.30 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 212 ISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 212 tsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
.+.+|+.....+++.|++++++.|.|||+++|...
T Consensus 126 ~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 126 VSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 46789999999999999999888999999999864
Done!