Query 006897
Match_columns 627
No_of_seqs 518 out of 3653
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:51:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 3.3E-41 1.1E-45 356.0 23.2 204 54-274 22-252 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 1E-40 3.5E-45 354.4 22.2 199 56-275 3-223 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 6.6E-41 2.3E-45 353.5 20.0 199 56-275 4-228 (359)
4 3gfo_A Cobalt import ATP-bindi 100.0 4.7E-40 1.6E-44 336.9 18.6 201 55-275 6-233 (275)
5 2olj_A Amino acid ABC transpor 100.0 1.9E-39 6.4E-44 330.5 22.5 198 56-275 24-248 (263)
6 1z47_A CYSA, putative ABC-tran 100.0 1.3E-39 4.3E-44 344.0 21.9 203 53-275 11-235 (355)
7 2it1_A 362AA long hypothetical 100.0 1.5E-39 5.1E-44 344.5 21.3 199 56-275 3-223 (362)
8 2yyz_A Sugar ABC transporter, 100.0 1.2E-39 4.2E-44 344.9 19.8 199 56-275 3-223 (359)
9 3tif_A Uncharacterized ABC tra 100.0 1.3E-39 4.6E-44 326.8 18.9 203 56-274 1-233 (235)
10 1b0u_A Histidine permease; ABC 100.0 2.6E-39 8.9E-44 329.8 21.0 197 56-274 6-241 (262)
11 1g29_1 MALK, maltose transport 100.0 2.7E-39 9.1E-44 344.4 21.8 199 56-275 3-229 (372)
12 1v43_A Sugar-binding transport 100.0 2.6E-39 8.7E-44 343.9 21.4 199 56-275 11-231 (372)
13 1oxx_K GLCV, glucose, ABC tran 100.0 1.6E-39 5.5E-44 344.0 17.5 198 56-274 3-229 (353)
14 4g1u_C Hemin import ATP-bindin 100.0 5.4E-39 1.8E-43 328.0 19.7 197 55-274 10-236 (266)
15 1vpl_A ABC transporter, ATP-bi 100.0 8.4E-39 2.9E-43 324.6 20.7 200 55-276 14-236 (256)
16 2pcj_A ABC transporter, lipopr 100.0 9.7E-39 3.3E-43 318.3 20.0 191 56-269 4-222 (224)
17 3d31_A Sulfate/molybdate ABC t 100.0 7.2E-39 2.4E-43 337.9 19.6 194 56-274 1-216 (348)
18 1g6h_A High-affinity branched- 100.0 4.6E-39 1.6E-43 327.2 16.3 198 55-272 6-239 (257)
19 1ji0_A ABC transporter; ATP bi 100.0 2.7E-38 9.1E-43 318.4 18.8 197 55-274 5-227 (240)
20 2onk_A Molybdate/tungstate ABC 100.0 2.4E-38 8.1E-43 318.4 16.5 193 56-274 1-215 (240)
21 2yz2_A Putative ABC transporte 100.0 1.2E-37 4E-42 318.4 16.5 202 56-276 2-228 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-37 3.9E-42 320.2 14.1 199 55-273 20-250 (279)
23 3nh6_A ATP-binding cassette SU 100.0 3.4E-37 1.2E-41 319.8 15.5 190 56-275 53-277 (306)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 8.3E-37 2.8E-41 309.4 16.8 197 56-272 3-230 (250)
25 2nq2_C Hypothetical ABC transp 100.0 5.3E-36 1.8E-40 303.7 19.9 188 56-273 4-215 (253)
26 2zu0_C Probable ATP-dependent 100.0 3.6E-36 1.2E-40 307.4 17.9 207 55-282 19-260 (267)
27 2ff7_A Alpha-hemolysin translo 100.0 3.2E-36 1.1E-40 304.4 15.4 190 56-274 7-231 (247)
28 2ixe_A Antigen peptide transpo 100.0 1.3E-36 4.6E-41 311.2 11.3 199 56-275 16-245 (271)
29 2qi9_C Vitamin B12 import ATP- 100.0 2.3E-35 8E-40 298.1 18.5 186 56-273 4-220 (249)
30 1mv5_A LMRA, multidrug resista 100.0 1.6E-36 5.3E-41 306.1 9.6 191 56-275 1-226 (243)
31 2ghi_A Transport protein; mult 100.0 3.9E-35 1.3E-39 298.6 14.1 191 56-275 17-242 (260)
32 1sgw_A Putative ABC transporte 100.0 3.8E-35 1.3E-39 289.7 12.8 181 55-264 9-210 (214)
33 2pjz_A Hypothetical protein ST 100.0 7.4E-35 2.5E-39 296.6 13.1 189 56-274 1-214 (263)
34 3gd7_A Fusion complex of cysti 100.0 3.6E-35 1.2E-39 313.9 10.6 190 55-275 18-242 (390)
35 3b5x_A Lipid A export ATP-bind 100.0 1.4E-33 4.9E-38 319.0 18.8 192 56-275 341-567 (582)
36 4a82_A Cystic fibrosis transme 100.0 7.8E-34 2.7E-38 320.8 15.2 191 56-275 339-564 (578)
37 3qf4_A ABC transporter, ATP-bi 100.0 7.8E-34 2.7E-38 321.1 14.8 191 56-275 341-566 (587)
38 3b60_A Lipid A export ATP-bind 100.0 1.4E-33 4.6E-38 319.2 16.3 192 56-275 341-567 (582)
39 2pze_A Cystic fibrosis transme 100.0 1.4E-33 4.7E-38 282.0 13.0 178 56-274 6-217 (229)
40 2yl4_A ATP-binding cassette SU 100.0 1.9E-33 6.5E-38 318.8 15.8 194 57-275 342-570 (595)
41 3qf4_B Uncharacterized ABC tra 100.0 1.3E-33 4.5E-38 320.0 12.9 190 56-275 354-578 (598)
42 2cbz_A Multidrug resistance-as 100.0 3.1E-33 1E-37 280.9 11.3 182 56-275 3-217 (237)
43 4f4c_A Multidrug resistance pr 100.0 3.9E-33 1.3E-37 340.6 10.5 194 56-275 1076-1304(1321)
44 4f4c_A Multidrug resistance pr 100.0 9.7E-32 3.3E-36 328.4 13.5 191 56-274 415-640 (1321)
45 2bbs_A Cystic fibrosis transme 100.0 2.7E-31 9.1E-36 274.0 9.8 173 56-274 40-246 (290)
46 3g5u_A MCG1178, multidrug resi 100.0 2.6E-30 9E-35 315.0 16.4 192 56-275 387-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 3.8E-30 1.3E-34 313.6 12.5 194 56-275 1030-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 1.7E-28 5.8E-33 277.0 15.3 185 54-275 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.8E-28 6.3E-33 273.8 13.5 185 54-275 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 99.9 1.6E-27 5.5E-32 265.6 14.6 186 54-274 267-476 (538)
51 3j16_B RLI1P; ribosome recycli 99.9 2.2E-26 7.6E-31 259.3 10.8 171 85-276 361-560 (608)
52 3ux8_A Excinuclease ABC, A sub 99.9 2.7E-26 9.1E-31 263.7 8.4 186 84-274 31-297 (670)
53 2iw3_A Elongation factor 3A; a 99.9 5.8E-25 2E-29 256.5 19.2 176 56-275 435-635 (986)
54 3bk7_A ABC transporter ATP-bin 99.9 5.7E-26 1.9E-30 256.4 6.3 176 56-262 83-304 (607)
55 2iw3_A Elongation factor 3A; a 99.9 1.2E-25 4E-30 262.4 8.5 186 54-269 669-981 (986)
56 1yqt_A RNAse L inhibitor; ATP- 99.9 1.1E-25 3.7E-30 251.5 6.2 175 57-262 21-234 (538)
57 3ux8_A Excinuclease ABC, A sub 99.9 3.8E-24 1.3E-28 245.8 12.0 175 85-274 336-639 (670)
58 3j16_B RLI1P; ribosome recycli 99.9 6E-23 2.1E-27 231.4 5.5 166 85-265 92-300 (608)
59 2vf7_A UVRA2, excinuclease ABC 99.9 2.6E-22 9E-27 232.2 9.8 198 54-274 500-826 (842)
60 3pih_A Uvrabc system protein A 99.9 1.5E-21 5E-26 227.8 14.4 180 85-275 598-902 (916)
61 3ozx_A RNAse L inhibitor; ATP 99.9 1.3E-22 4.4E-27 226.1 4.1 152 94-263 22-214 (538)
62 2r6f_A Excinuclease ABC subuni 99.8 9.4E-22 3.2E-26 227.9 10.9 189 55-274 628-941 (972)
63 2ygr_A Uvrabc system protein A 99.8 3.6E-21 1.2E-25 223.8 11.1 190 55-275 646-960 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 99.8 8.2E-25 2.8E-29 239.2 -18.5 166 88-274 129-337 (460)
65 1znw_A Guanylate kinase, GMP k 99.8 2.5E-23 8.7E-28 204.1 -10.0 172 82-261 7-203 (207)
66 2dpy_A FLII, flagellum-specifi 99.8 1.5E-23 5E-28 228.1 -15.0 185 55-273 130-342 (438)
67 4aby_A DNA repair protein RECN 99.8 1.6E-19 5.5E-24 195.6 9.7 177 85-267 49-380 (415)
68 2v9p_A Replication protein E1; 99.8 1.2E-22 4.3E-27 209.9 -18.1 155 56-279 101-270 (305)
69 2obl_A ESCN; ATPase, hydrolase 99.7 1.4E-19 4.8E-24 191.1 -1.0 180 56-273 45-253 (347)
70 3b85_A Phosphate starvation-in 99.7 1E-19 3.5E-24 178.6 -5.9 126 83-246 12-159 (208)
71 1tq4_A IIGP1, interferon-induc 99.7 1.3E-19 4.3E-24 195.0 -5.9 158 84-263 36-255 (413)
72 1tf7_A KAIC; homohexamer, hexa 99.7 2.5E-20 8.4E-25 208.2 -14.7 162 83-263 24-211 (525)
73 1z6g_A Guanylate kinase; struc 99.6 5.1E-19 1.7E-23 175.0 -10.6 164 85-260 11-208 (218)
74 3b9q_A Chloroplast SRP recepto 99.6 8.7E-18 3E-22 174.2 -2.4 156 87-264 90-284 (302)
75 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 3.4E-16 1.2E-20 166.7 9.8 65 199-266 276-364 (365)
76 2jeo_A Uridine-cytidine kinase 99.6 5.2E-16 1.8E-20 156.0 9.4 164 82-277 10-189 (245)
77 3sop_A Neuronal-specific septi 99.6 3E-17 1E-21 167.5 0.1 133 99-246 4-151 (270)
78 4gp7_A Metallophosphoesterase; 99.6 1.3E-16 4.3E-21 151.7 1.6 122 89-246 1-160 (171)
79 1e69_A Chromosome segregation 99.6 3.5E-16 1.2E-20 163.8 2.9 58 211-272 250-310 (322)
80 2ehv_A Hypothetical protein PH 99.6 1.3E-16 4.4E-21 159.8 -0.5 162 87-260 19-206 (251)
81 2og2_A Putative signal recogni 99.6 8.2E-17 2.8E-21 170.1 -2.2 155 88-264 148-341 (359)
82 4a74_A DNA repair and recombin 99.6 1.2E-16 4E-21 158.0 -2.8 164 86-263 13-201 (231)
83 2pt7_A CAG-ALFA; ATPase, prote 99.6 6.8E-16 2.3E-20 162.0 2.3 133 86-264 160-292 (330)
84 1cr0_A DNA primase/helicase; R 99.5 2.8E-16 9.4E-21 162.4 -1.7 167 84-264 22-237 (296)
85 3aez_A Pantothenate kinase; tr 99.5 7.3E-17 2.5E-21 168.0 -7.9 138 94-263 87-246 (312)
86 1htw_A HI0065; nucleotide-bind 99.5 7.5E-17 2.5E-21 151.2 -7.1 79 83-169 19-97 (158)
87 3szr_A Interferon-induced GTP- 99.5 4.3E-16 1.5E-20 176.4 -3.6 189 56-273 10-235 (608)
88 1s96_A Guanylate kinase, GMP k 99.5 6.1E-16 2.1E-20 152.9 -4.0 151 90-278 9-163 (219)
89 2o8b_B DNA mismatch repair pro 99.5 3.1E-14 1E-18 169.0 6.0 168 55-272 749-939 (1022)
90 2qnr_A Septin-2, protein NEDD5 99.4 8.7E-15 3E-19 151.7 0.2 143 83-246 10-168 (301)
91 1ye8_A Protein THEP1, hypothet 99.4 9.9E-15 3.4E-19 139.6 -1.2 138 99-266 2-159 (178)
92 1rj9_A FTSY, signal recognitio 99.4 2.3E-15 7.8E-20 156.1 -6.3 144 96-246 101-259 (304)
93 2gza_A Type IV secretion syste 99.4 9.8E-14 3.4E-18 147.4 5.0 136 87-263 165-303 (361)
94 3thx_A DNA mismatch repair pro 99.4 1.6E-13 5.3E-18 161.1 6.4 155 83-273 648-811 (934)
95 3asz_A Uridine kinase; cytidin 99.4 3.2E-14 1.1E-18 139.1 -0.0 125 94-246 3-162 (211)
96 2bdt_A BH3686; alpha-beta prot 99.4 1.9E-14 6.7E-19 138.2 -3.1 162 97-273 2-182 (189)
97 1wb9_A DNA mismatch repair pro 99.4 1.1E-13 3.7E-18 160.4 2.4 157 83-268 594-751 (800)
98 1pzn_A RAD51, DNA repair and r 99.3 2.4E-14 8.3E-19 151.4 -4.5 168 85-269 118-309 (349)
99 2eyu_A Twitching motility prot 99.3 5.9E-13 2E-17 135.0 5.5 133 85-261 15-147 (261)
100 2w0m_A SSO2452; RECA, SSPF, un 99.3 6.8E-14 2.3E-18 138.0 -1.9 169 84-262 9-192 (235)
101 2yhs_A FTSY, cell division pro 99.3 4.5E-13 1.5E-17 145.8 4.2 174 87-271 283-475 (503)
102 1tf7_A KAIC; homohexamer, hexa 99.3 5.2E-13 1.8E-17 148.9 2.2 134 91-263 275-444 (525)
103 3e70_C DPA, signal recognition 99.3 1.5E-12 5.3E-17 136.1 4.8 137 94-245 126-279 (328)
104 3thx_B DNA mismatch repair pro 99.3 1.7E-12 5.9E-17 151.8 5.4 156 83-266 659-816 (918)
105 1ewq_A DNA mismatch repair pro 99.3 4.2E-13 1.4E-17 154.7 -0.6 149 83-267 565-716 (765)
106 2o5v_A DNA replication and rep 99.2 7.4E-12 2.5E-16 132.4 7.0 54 211-273 301-354 (359)
107 1lw7_A Transcriptional regulat 99.2 3.8E-14 1.3E-18 150.9 -14.0 162 86-261 157-343 (365)
108 2qag_B Septin-6, protein NEDD5 99.2 3.5E-13 1.2E-17 144.8 -6.9 89 56-170 16-106 (427)
109 3qkt_A DNA double-strand break 99.2 9.5E-11 3.3E-15 123.3 11.5 47 211-260 281-327 (339)
110 4ad8_A DNA repair protein RECN 99.2 2.1E-11 7.3E-16 135.6 6.5 55 204-262 399-473 (517)
111 2yv5_A YJEQ protein; hydrolase 99.2 5.3E-12 1.8E-16 130.8 1.4 113 93-210 161-294 (302)
112 2oap_1 GSPE-2, type II secreti 99.1 6.2E-13 2.1E-17 147.1 -6.2 164 84-254 247-458 (511)
113 2rcn_A Probable GTPase ENGC; Y 99.1 1.8E-11 6.3E-16 128.9 4.7 131 87-230 206-344 (358)
114 2qag_C Septin-7; cell cycle, c 99.1 1.4E-11 4.8E-16 132.7 3.5 158 56-246 11-178 (418)
115 1n0w_A DNA repair protein RAD5 99.1 3.9E-11 1.3E-15 119.2 6.3 155 86-262 12-209 (243)
116 2i3b_A HCR-ntpase, human cance 99.1 1.1E-12 3.6E-17 126.6 -5.2 54 97-155 1-54 (189)
117 1u0l_A Probable GTPase ENGC; p 99.1 5.1E-12 1.8E-16 130.8 -0.6 97 92-197 164-281 (301)
118 1zp6_A Hypothetical protein AT 99.1 2.7E-13 9.3E-18 130.1 -10.1 72 93-171 5-76 (191)
119 3jvv_A Twitching mobility prot 99.1 2.9E-11 9.9E-16 127.8 4.4 128 93-262 119-246 (356)
120 1sq5_A Pantothenate kinase; P- 99.1 1E-12 3.5E-17 136.6 -7.0 96 56-174 37-156 (308)
121 3pih_A Uvrabc system protein A 99.1 2.4E-11 8.1E-16 142.1 2.3 139 114-275 385-560 (916)
122 1pui_A ENGB, probable GTP-bind 99.1 6.1E-13 2.1E-17 129.3 -9.6 48 56-121 3-50 (210)
123 2r6f_A Excinuclease ABC subuni 99.0 1.9E-10 6.7E-15 133.7 7.1 109 159-274 450-599 (972)
124 1nlf_A Regulatory protein REPA 99.0 1.7E-10 5.9E-15 117.8 5.6 133 93-246 26-182 (279)
125 2ewv_A Twitching motility prot 99.0 3.7E-11 1.3E-15 128.0 0.5 132 86-261 127-258 (372)
126 1t9h_A YLOQ, probable GTPase E 99.0 3E-11 1E-15 124.8 -1.0 103 92-198 168-287 (307)
127 2qm8_A GTPase/ATPase; G protei 99.0 2.4E-12 8.3E-17 135.4 -10.0 87 56-160 29-121 (337)
128 3lda_A DNA repair protein RAD5 99.0 1.3E-10 4.4E-15 124.6 2.4 157 86-263 166-364 (400)
129 3euj_A Chromosome partition pr 98.9 3.2E-10 1.1E-14 123.8 4.8 51 85-139 18-68 (483)
130 1p9r_A General secretion pathw 98.9 8.5E-12 2.9E-16 134.6 -8.0 121 84-210 156-301 (418)
131 2ygr_A Uvrabc system protein A 98.9 6.7E-10 2.3E-14 129.7 7.0 112 157-275 465-617 (993)
132 1nij_A Hypothetical protein YJ 98.9 7E-13 2.4E-17 138.4 -16.6 144 98-246 5-190 (318)
133 2bbw_A Adenylate kinase 4, AK4 98.9 2.2E-11 7.6E-16 122.0 -5.4 71 96-171 26-99 (246)
134 2vf7_A UVRA2, excinuclease ABC 98.9 2.6E-10 8.8E-15 132.3 2.5 158 105-274 270-474 (842)
135 1in4_A RUVB, holliday junction 98.9 9E-12 3.1E-16 130.9 -8.9 164 84-255 31-211 (334)
136 3tr0_A Guanylate kinase, GMP k 98.9 9.5E-11 3.2E-15 113.4 -2.3 70 91-167 1-72 (205)
137 2cvh_A DNA repair and recombin 98.9 1.5E-09 5.1E-14 106.0 5.9 157 85-262 7-185 (220)
138 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 8.9E-11 3E-15 125.3 -6.7 163 93-270 16-208 (392)
139 1qhl_A Protein (cell division 98.8 2.9E-10 9.8E-15 112.6 -2.8 60 91-154 22-91 (227)
140 3ec2_A DNA replication protein 98.7 3.2E-09 1.1E-13 100.7 2.6 113 91-247 32-145 (180)
141 1sxj_E Activator 1 40 kDa subu 98.7 1.1E-08 3.8E-13 107.5 6.3 139 100-256 39-185 (354)
142 2dr3_A UPF0273 protein PH0284; 98.7 7.5E-10 2.5E-14 110.0 -3.4 166 85-261 10-196 (247)
143 2x8a_A Nuclear valosin-contain 98.7 2.4E-10 8.2E-15 116.6 -7.1 79 84-169 33-114 (274)
144 2kjq_A DNAA-related protein; s 98.6 2.1E-08 7.2E-13 92.6 5.2 44 85-137 29-74 (149)
145 1udx_A The GTP-binding protein 98.6 3.2E-10 1.1E-14 122.0 -8.6 35 87-121 147-181 (416)
146 4eun_A Thermoresistant glucoki 98.6 2.4E-09 8.2E-14 103.6 -1.7 75 86-167 18-93 (200)
147 3lnc_A Guanylate kinase, GMP k 98.6 1.2E-08 4.2E-13 100.9 2.5 38 85-122 15-53 (231)
148 3kta_A Chromosome segregation 98.6 3.8E-09 1.3E-13 100.3 -1.5 137 86-229 14-168 (182)
149 1iy2_A ATP-dependent metallopr 98.5 6.3E-09 2.1E-13 106.0 -3.0 79 84-169 62-143 (278)
150 1ixz_A ATP-dependent metallopr 98.5 6.9E-09 2.4E-13 104.1 -3.1 104 84-194 38-146 (254)
151 2f1r_A Molybdopterin-guanine d 98.5 9.2E-09 3.2E-13 97.3 -2.2 61 98-158 3-73 (171)
152 3hr8_A Protein RECA; alpha and 98.4 2.6E-07 8.9E-12 97.2 8.0 153 86-262 48-230 (356)
153 3nwj_A ATSK2; P loop, shikimat 98.4 1.4E-08 4.7E-13 102.1 -1.8 52 56-121 17-72 (250)
154 3c8u_A Fructokinase; YP_612366 98.4 4.4E-08 1.5E-12 95.3 1.8 44 94-137 19-62 (208)
155 2px0_A Flagellar biosynthesis 98.4 2E-07 6.9E-12 95.9 6.4 142 95-267 103-247 (296)
156 1odf_A YGR205W, hypothetical 3 98.4 1E-07 3.5E-12 97.8 2.9 98 95-210 29-142 (290)
157 1f2t_B RAD50 ABC-ATPase; DNA d 98.3 1.2E-07 4.1E-12 87.3 2.2 50 211-263 90-141 (148)
158 1zu4_A FTSY; GTPase, signal re 98.3 1.2E-07 4.2E-12 98.6 2.2 81 87-170 95-187 (320)
159 3uie_A Adenylyl-sulfate kinase 98.3 1.3E-08 4.6E-13 98.3 -5.0 51 84-138 12-64 (200)
160 1lvg_A Guanylate kinase, GMP k 98.3 2E-07 6.8E-12 90.0 2.2 28 95-122 2-29 (198)
161 4e22_A Cytidylate kinase; P-lo 98.3 9.2E-08 3.2E-12 96.1 -0.9 76 86-167 19-113 (252)
162 3a00_A Guanylate kinase, GMP k 98.2 4.2E-07 1.5E-11 86.6 2.5 27 97-123 1-27 (186)
163 3vaa_A Shikimate kinase, SK; s 98.2 6.3E-07 2.2E-11 86.3 3.4 40 82-121 10-49 (199)
164 1knq_A Gluconate kinase; ALFA/ 98.2 1.2E-07 4E-12 89.3 -1.9 38 95-139 6-43 (175)
165 2j41_A Guanylate kinase; GMP, 98.1 1.3E-06 4.3E-11 84.2 3.9 32 92-123 1-32 (207)
166 2r6a_A DNAB helicase, replicat 98.1 1.2E-06 4E-11 95.7 3.7 173 84-264 190-401 (454)
167 2zr9_A Protein RECA, recombina 98.1 2.1E-06 7.3E-11 90.3 4.8 79 86-167 48-128 (349)
168 1kgd_A CASK, peripheral plasma 98.0 2.2E-06 7.5E-11 81.2 3.2 29 95-123 3-31 (180)
169 2ius_A DNA translocase FTSK; n 98.0 1.9E-06 6.7E-11 94.6 2.5 46 89-137 159-206 (512)
170 2vp4_A Deoxynucleoside kinase; 97.9 3.1E-06 1.1E-10 83.5 3.3 39 92-137 15-53 (230)
171 3tau_A Guanylate kinase, GMP k 97.9 6.4E-06 2.2E-10 79.9 3.9 29 95-123 6-34 (208)
172 1rz3_A Hypothetical protein rb 97.8 4.1E-06 1.4E-10 80.8 1.8 42 93-137 18-59 (201)
173 1svm_A Large T antigen; AAA+ f 97.8 2.7E-06 9.3E-11 90.3 -0.1 38 84-121 156-193 (377)
174 3tqc_A Pantothenate kinase; bi 97.8 2.2E-06 7.6E-11 88.9 -1.4 41 83-123 72-118 (321)
175 3ney_A 55 kDa erythrocyte memb 97.8 9.4E-06 3.2E-10 78.2 3.1 31 92-122 14-44 (197)
176 1w1w_A Structural maintenance 97.7 1E-05 3.5E-10 87.6 2.7 33 92-124 21-53 (430)
177 2qt1_A Nicotinamide riboside k 97.7 2E-05 6.8E-10 76.1 4.1 31 91-121 15-45 (207)
178 1cke_A CK, MSSA, protein (cyti 97.7 3.6E-06 1.2E-10 82.3 -1.5 59 97-155 5-74 (227)
179 3k1j_A LON protease, ATP-depen 97.7 9.4E-06 3.2E-10 91.7 1.7 68 83-155 46-113 (604)
180 3cr8_A Sulfate adenylyltranfer 97.7 8.7E-06 3E-10 90.6 0.9 43 93-137 365-408 (552)
181 2dy1_A Elongation factor G; tr 97.6 3E-06 1E-10 96.8 -3.0 134 91-247 3-138 (665)
182 1kag_A SKI, shikimate kinase I 97.6 2E-05 6.9E-10 73.5 2.6 27 96-122 3-29 (173)
183 1vma_A Cell division protein F 97.6 1E-05 3.5E-10 83.4 0.6 47 89-138 96-142 (306)
184 1oix_A RAS-related protein RAB 97.6 3E-05 1E-09 73.7 3.7 40 99-138 31-78 (191)
185 1ls1_A Signal recognition part 97.6 1.5E-05 5.2E-10 81.8 1.6 46 88-138 91-136 (295)
186 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 4E-05 1.4E-09 70.3 3.8 30 88-118 15-44 (149)
187 3kta_B Chromosome segregation 97.5 3.2E-05 1.1E-09 72.9 2.7 59 211-273 95-156 (173)
188 2dhr_A FTSH; AAA+ protein, hex 97.5 5.6E-06 1.9E-10 91.0 -3.0 47 85-138 54-100 (499)
189 3ice_A Transcription terminati 97.4 1.4E-05 4.7E-10 84.1 -0.9 33 89-121 166-198 (422)
190 2p67_A LAO/AO transport system 97.4 1.2E-05 4E-10 84.4 -1.9 51 84-137 43-93 (341)
191 2f9l_A RAB11B, member RAS onco 97.4 0.0001 3.6E-09 70.2 4.2 39 99-137 7-53 (199)
192 4eaq_A DTMP kinase, thymidylat 97.3 8.5E-05 2.9E-09 73.2 3.3 46 86-135 12-60 (229)
193 2pez_A Bifunctional 3'-phospho 97.3 6.9E-05 2.4E-09 70.4 2.0 39 95-137 3-43 (179)
194 3m6a_A ATP-dependent protease 97.3 2.9E-05 1E-09 86.5 -0.8 48 85-136 97-144 (543)
195 1mky_A Probable GTP-binding pr 97.3 0.00019 6.7E-09 77.7 5.3 70 99-168 182-262 (439)
196 2www_A Methylmalonic aciduria 97.2 9.1E-05 3.1E-09 77.8 2.1 40 95-137 72-111 (349)
197 3qks_A DNA double-strand break 97.2 0.00021 7.2E-09 69.0 3.8 30 88-118 15-44 (203)
198 2qag_A Septin-2, protein NEDD5 97.1 1.6E-05 5.5E-10 84.0 -5.4 47 56-123 17-63 (361)
199 1np6_A Molybdopterin-guanine d 97.0 0.00024 8.2E-09 67.0 2.9 40 98-137 7-46 (174)
200 1jjv_A Dephospho-COA kinase; P 97.0 0.00031 1.1E-08 67.4 3.6 21 99-119 4-24 (206)
201 2ffh_A Protein (FFH); SRP54, s 97.0 0.00025 8.4E-09 76.3 2.5 47 88-139 91-137 (425)
202 1y63_A LMAJ004144AAA protein; 97.0 0.00031 1.1E-08 66.4 3.0 32 89-120 2-33 (184)
203 2qor_A Guanylate kinase; phosp 96.9 0.00036 1.2E-08 67.1 3.1 28 94-121 9-36 (204)
204 1m7g_A Adenylylsulfate kinase; 96.9 0.00018 6.1E-09 69.6 0.6 43 92-137 20-64 (211)
205 3auy_A DNA double-strand break 96.8 0.00083 2.8E-08 71.0 5.3 46 211-260 314-359 (371)
206 3auy_A DNA double-strand break 96.8 0.00053 1.8E-08 72.5 3.8 31 87-118 16-46 (371)
207 2gj8_A MNME, tRNA modification 96.8 0.00053 1.8E-08 63.8 3.3 27 95-121 2-28 (172)
208 3t34_A Dynamin-related protein 96.8 0.00042 1.5E-08 72.9 2.8 34 84-120 24-57 (360)
209 2if2_A Dephospho-COA kinase; a 96.8 0.00047 1.6E-08 66.0 2.8 21 99-119 3-23 (204)
210 1sxj_C Activator 1 40 kDa subu 96.8 5.9E-05 2E-09 78.7 -4.1 40 84-123 31-72 (340)
211 3k53_A Ferrous iron transport 96.8 0.00055 1.9E-08 68.9 3.1 49 211-260 144-192 (271)
212 2yvu_A Probable adenylyl-sulfa 96.8 0.00047 1.6E-08 65.1 2.4 30 94-123 10-39 (186)
213 1m2o_B GTP-binding protein SAR 96.7 0.0006 2E-08 64.5 2.9 35 85-120 12-46 (190)
214 1j8m_F SRP54, signal recogniti 96.7 0.00021 7E-09 73.4 -0.8 47 88-138 89-136 (297)
215 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00018 6.1E-09 75.2 -1.3 38 85-122 10-49 (359)
216 1ega_A Protein (GTP-binding pr 96.6 0.00072 2.5E-08 69.4 2.5 26 96-121 7-32 (301)
217 2p5t_B PEZT; postsegregational 96.6 0.0005 1.7E-08 68.6 1.3 46 86-137 22-67 (253)
218 3cm0_A Adenylate kinase; ATP-b 96.6 0.0011 3.9E-08 62.1 3.4 26 95-120 2-27 (186)
219 1w1w_A Structural maintenance 96.5 0.00065 2.2E-08 73.3 1.8 47 211-260 364-410 (430)
220 2qtf_A Protein HFLX, GTP-bindi 96.5 0.0014 4.7E-08 69.2 4.2 42 96-137 177-227 (364)
221 3t61_A Gluconokinase; PSI-biol 96.5 0.00094 3.2E-08 63.8 2.7 25 97-121 18-42 (202)
222 2wji_A Ferrous iron transport 96.5 0.0012 4.2E-08 60.6 3.4 24 99-122 5-28 (165)
223 1f6b_A SAR1; gtpases, N-termin 96.5 0.00026 8.9E-09 67.6 -1.4 36 84-120 13-48 (198)
224 1lv7_A FTSH; alpha/beta domain 96.5 0.0011 3.8E-08 65.9 2.9 45 86-137 36-80 (257)
225 1q3t_A Cytidylate kinase; nucl 96.4 0.0016 5.4E-08 64.0 3.3 29 93-121 12-40 (236)
226 3kb2_A SPBC2 prophage-derived 96.4 0.0018 6E-08 59.7 3.3 23 99-121 3-25 (173)
227 1qhx_A CPT, protein (chloramph 96.3 0.002 6.8E-08 59.9 3.7 26 97-122 3-28 (178)
228 1u94_A RECA protein, recombina 96.2 0.007 2.4E-07 63.5 7.5 35 86-120 50-86 (356)
229 2zej_A Dardarin, leucine-rich 96.2 0.002 6.9E-08 60.3 3.1 23 99-121 4-26 (184)
230 2wjg_A FEOB, ferrous iron tran 96.2 0.0023 8E-08 59.7 3.4 22 99-120 9-30 (188)
231 2ohf_A Protein OLA1, GTP-bindi 96.2 0.002 6.8E-08 68.4 3.1 28 93-120 18-45 (396)
232 3r20_A Cytidylate kinase; stru 96.2 0.0025 8.5E-08 62.8 3.4 26 96-121 8-33 (233)
233 1kht_A Adenylate kinase; phosp 96.2 0.0027 9.3E-08 59.5 3.5 26 96-121 2-27 (192)
234 1xjc_A MOBB protein homolog; s 96.1 0.002 6.9E-08 60.2 2.2 26 98-123 5-30 (169)
235 4a1f_A DNAB helicase, replicat 96.1 0.00064 2.2E-08 70.8 -1.4 154 84-245 33-206 (338)
236 2rhm_A Putative kinase; P-loop 96.0 0.0027 9.4E-08 59.7 2.9 26 95-120 3-28 (193)
237 1vht_A Dephospho-COA kinase; s 96.0 0.0034 1.2E-07 60.6 3.5 24 96-119 3-26 (218)
238 2ze6_A Isopentenyl transferase 96.0 0.0032 1.1E-07 62.8 3.3 24 98-121 2-25 (253)
239 1ypw_A Transitional endoplasmi 96.0 0.0021 7.3E-08 74.8 2.3 41 92-137 233-273 (806)
240 1ex7_A Guanylate kinase; subst 96.0 0.0033 1.1E-07 59.7 3.2 22 99-120 3-24 (186)
241 3lw7_A Adenylate kinase relate 96.0 0.0036 1.2E-07 57.5 3.3 19 99-117 3-21 (179)
242 3trf_A Shikimate kinase, SK; a 95.9 0.004 1.4E-07 58.3 3.5 26 96-121 4-29 (185)
243 2jaq_A Deoxyguanosine kinase; 95.9 0.0041 1.4E-07 58.9 3.4 23 99-121 2-24 (205)
244 1gvn_B Zeta; postsegregational 95.9 0.0042 1.4E-07 63.1 3.6 36 95-135 31-66 (287)
245 3iij_A Coilin-interacting nucl 95.8 0.004 1.4E-07 58.2 3.0 26 95-120 9-34 (180)
246 2v54_A DTMP kinase, thymidylat 95.8 0.0048 1.6E-07 58.6 3.6 26 96-121 3-28 (204)
247 2plr_A DTMP kinase, probable t 95.8 0.0053 1.8E-07 58.5 3.8 27 96-122 3-29 (213)
248 3lxx_A GTPase IMAP family memb 95.8 0.0045 1.5E-07 60.7 3.2 25 99-123 31-55 (239)
249 1uf9_A TT1252 protein; P-loop, 95.7 0.0048 1.7E-07 58.5 3.2 24 97-120 8-31 (203)
250 1via_A Shikimate kinase; struc 95.7 0.0049 1.7E-07 57.3 3.2 23 99-121 6-28 (175)
251 1ly1_A Polynucleotide kinase; 95.7 0.0057 1.9E-07 56.6 3.5 22 98-119 3-24 (181)
252 2q6t_A DNAB replication FORK h 95.7 0.0095 3.2E-07 64.4 5.7 154 85-243 188-361 (444)
253 2wwf_A Thymidilate kinase, put 95.7 0.0054 1.8E-07 58.6 3.4 27 95-121 8-34 (212)
254 3cmw_A Protein RECA, recombina 95.7 0.021 7E-07 70.8 9.1 30 93-122 728-757 (1706)
255 2c95_A Adenylate kinase 1; tra 95.6 0.0053 1.8E-07 57.8 3.1 26 95-120 7-32 (196)
256 1gtv_A TMK, thymidylate kinase 95.6 0.0026 9E-08 60.9 0.8 24 99-122 2-25 (214)
257 3cf0_A Transitional endoplasmi 95.6 0.0058 2E-07 62.4 3.3 41 92-137 44-84 (301)
258 1tev_A UMP-CMP kinase; ploop, 95.6 0.0071 2.4E-07 56.7 3.7 25 96-120 2-26 (196)
259 1nn5_A Similar to deoxythymidy 95.5 0.0063 2.1E-07 58.2 3.2 28 94-121 6-33 (215)
260 3kl4_A SRP54, signal recogniti 95.5 0.0037 1.3E-07 67.2 1.6 39 96-137 96-134 (433)
261 1nks_A Adenylate kinase; therm 95.4 0.0068 2.3E-07 56.7 3.0 23 99-121 3-25 (194)
262 3bgw_A DNAB-like replicative h 95.4 0.0045 1.5E-07 67.0 1.7 35 85-119 185-219 (444)
263 1ko7_A HPR kinase/phosphatase; 95.3 0.012 4.1E-07 60.4 4.7 36 84-120 132-167 (314)
264 2z0h_A DTMP kinase, thymidylat 95.3 0.0088 3E-07 56.3 3.4 23 99-121 2-24 (197)
265 3ake_A Cytidylate kinase; CMP 95.3 0.0081 2.8E-07 57.1 3.1 23 99-121 4-26 (208)
266 2bwj_A Adenylate kinase 5; pho 95.3 0.0068 2.3E-07 57.2 2.5 27 95-121 10-36 (199)
267 2vli_A Antibiotic resistance p 95.3 0.0065 2.2E-07 56.6 2.3 26 96-121 4-29 (183)
268 1aky_A Adenylate kinase; ATP:A 95.2 0.011 3.6E-07 57.2 3.7 26 96-121 3-28 (220)
269 2ged_A SR-beta, signal recogni 95.2 0.0089 3E-07 55.9 2.9 24 98-121 49-72 (193)
270 2ce7_A Cell division protein F 95.2 0.004 1.4E-07 67.8 0.5 34 86-121 40-73 (476)
271 4ag6_A VIRB4 ATPase, type IV s 95.1 0.0079 2.7E-07 63.8 2.6 37 96-135 34-70 (392)
272 2nzj_A GTP-binding protein REM 95.1 0.011 3.8E-07 54.0 3.3 23 99-121 6-28 (175)
273 1z2a_A RAS-related protein RAB 95.1 0.0098 3.4E-07 53.9 2.9 23 99-121 7-29 (168)
274 1zd8_A GTP:AMP phosphotransfer 95.1 0.011 3.6E-07 57.6 3.2 26 95-120 5-30 (227)
275 2erx_A GTP-binding protein DI- 95.1 0.011 3.9E-07 53.6 3.2 22 99-120 5-26 (172)
276 3llm_A ATP-dependent RNA helic 95.1 0.0076 2.6E-07 59.1 2.1 25 94-118 73-97 (235)
277 3q72_A GTP-binding protein RAD 95.0 0.009 3.1E-07 54.2 2.4 24 99-122 4-27 (166)
278 3fb4_A Adenylate kinase; psych 95.0 0.012 4E-07 56.6 3.4 22 99-120 2-23 (216)
279 1xp8_A RECA protein, recombina 95.0 0.023 7.8E-07 59.8 5.7 34 86-119 61-96 (366)
280 2cdn_A Adenylate kinase; phosp 95.0 0.013 4.6E-07 55.6 3.7 26 96-121 19-44 (201)
281 3b1v_A Ferrous iron uptake tra 95.0 0.012 4.2E-07 59.2 3.5 23 99-121 5-27 (272)
282 2dyk_A GTP-binding protein; GT 95.0 0.011 3.9E-07 53.1 2.9 23 99-121 3-25 (161)
283 1kao_A RAP2A; GTP-binding prot 95.0 0.011 3.9E-07 53.2 2.9 23 99-121 5-27 (167)
284 3q85_A GTP-binding protein REM 95.0 0.012 4.2E-07 53.4 3.2 23 99-121 4-26 (169)
285 2pbr_A DTMP kinase, thymidylat 95.0 0.013 4.3E-07 54.9 3.3 23 99-121 2-24 (195)
286 1u8z_A RAS-related protein RAL 94.9 0.012 3.9E-07 53.2 2.9 23 99-121 6-28 (168)
287 1e6c_A Shikimate kinase; phosp 94.9 0.011 3.9E-07 54.3 2.9 24 98-121 3-26 (173)
288 1ukz_A Uridylate kinase; trans 94.9 0.014 4.6E-07 55.5 3.5 24 97-120 15-38 (203)
289 1zuh_A Shikimate kinase; alpha 94.9 0.014 4.8E-07 53.7 3.5 24 98-121 8-31 (168)
290 2ce2_X GTPase HRAS; signaling 94.9 0.011 3.6E-07 53.3 2.5 23 99-121 5-27 (166)
291 1fzq_A ADP-ribosylation factor 94.9 0.01 3.5E-07 55.3 2.4 22 99-120 18-39 (181)
292 1z0j_A RAB-22, RAS-related pro 94.9 0.012 4.2E-07 53.3 2.9 23 99-121 8-30 (170)
293 3tw8_B RAS-related protein RAB 94.9 0.012 4.1E-07 54.0 2.9 23 99-121 11-33 (181)
294 2pt5_A Shikimate kinase, SK; a 94.9 0.015 5E-07 53.3 3.4 22 99-120 2-23 (168)
295 1z08_A RAS-related protein RAB 94.9 0.013 4.3E-07 53.3 2.9 23 99-121 8-30 (170)
296 3dl0_A Adenylate kinase; phosp 94.9 0.014 4.8E-07 56.1 3.4 22 99-120 2-23 (216)
297 2lkc_A Translation initiation 94.8 0.017 5.8E-07 53.0 3.8 24 97-120 8-31 (178)
298 1ek0_A Protein (GTP-binding pr 94.8 0.013 4.4E-07 53.1 2.9 23 99-121 5-27 (170)
299 3a4m_A L-seryl-tRNA(SEC) kinas 94.8 0.016 5.4E-07 57.8 3.8 26 96-121 3-28 (260)
300 3lxw_A GTPase IMAP family memb 94.8 0.013 4.6E-07 57.9 3.2 24 99-122 23-46 (247)
301 1v5w_A DMC1, meiotic recombina 94.8 0.014 4.9E-07 60.8 3.6 35 86-120 110-145 (343)
302 1zak_A Adenylate kinase; ATP:A 94.8 0.011 3.9E-07 57.1 2.7 26 96-121 4-29 (222)
303 1c1y_A RAS-related protein RAP 94.8 0.013 4.5E-07 53.0 2.9 23 99-121 5-27 (167)
304 1wms_A RAB-9, RAB9, RAS-relate 94.8 0.013 4.5E-07 53.7 2.9 23 99-121 9-31 (177)
305 1ky3_A GTP-binding protein YPT 94.8 0.013 4.5E-07 53.8 2.9 23 99-121 10-32 (182)
306 2iyv_A Shikimate kinase, SK; t 94.8 0.012 4.1E-07 54.9 2.7 24 98-121 3-26 (184)
307 1qf9_A UMP/CMP kinase, protein 94.8 0.015 5E-07 54.4 3.2 24 97-120 6-29 (194)
308 1jal_A YCHF protein; nucleotid 94.8 0.021 7.3E-07 59.9 4.7 24 97-120 2-25 (363)
309 1g16_A RAS-related protein SEC 94.8 0.012 4.1E-07 53.4 2.5 23 99-121 5-27 (170)
310 1svi_A GTP-binding protein YSX 94.7 0.013 4.3E-07 54.9 2.6 23 99-121 25-47 (195)
311 2grj_A Dephospho-COA kinase; T 94.7 0.016 5.6E-07 55.1 3.4 24 97-120 12-35 (192)
312 3pqc_A Probable GTP-binding pr 94.7 0.013 4.6E-07 54.5 2.6 23 99-121 25-47 (195)
313 2fn4_A P23, RAS-related protei 94.7 0.013 4.6E-07 53.7 2.6 23 99-121 11-33 (181)
314 1uj2_A Uridine-cytidine kinase 94.7 0.016 5.6E-07 57.3 3.4 24 98-121 23-46 (252)
315 3tlx_A Adenylate kinase 2; str 94.7 0.018 6.2E-07 56.8 3.7 25 96-120 28-52 (243)
316 1q57_A DNA primase/helicase; d 94.6 0.012 4E-07 64.7 2.4 35 85-119 230-264 (503)
317 1r2q_A RAS-related protein RAB 94.6 0.016 5.4E-07 52.5 2.9 22 99-120 8-29 (170)
318 4dsu_A GTPase KRAS, isoform 2B 94.6 0.016 5.4E-07 53.7 2.9 23 99-121 6-28 (189)
319 2cxx_A Probable GTP-binding pr 94.6 0.014 4.9E-07 54.1 2.6 22 100-121 4-25 (190)
320 2hxs_A RAB-26, RAS-related pro 94.6 0.018 6E-07 52.8 3.2 23 99-121 8-30 (178)
321 3clv_A RAB5 protein, putative; 94.6 0.016 5.6E-07 54.1 2.9 23 99-121 9-31 (208)
322 2oil_A CATX-8, RAS-related pro 94.5 0.016 5.6E-07 54.2 2.9 23 99-121 27-49 (193)
323 1upt_A ARL1, ADP-ribosylation 94.5 0.017 5.7E-07 52.6 2.9 22 99-120 9-30 (171)
324 2e87_A Hypothetical protein PH 94.5 0.016 5.4E-07 60.7 3.1 26 96-121 166-191 (357)
325 3cmu_A Protein RECA, recombina 94.5 0.09 3.1E-06 66.1 10.1 50 86-137 370-421 (2050)
326 1r8s_A ADP-ribosylation factor 94.5 0.017 5.9E-07 52.1 2.9 21 100-120 3-23 (164)
327 3bc1_A RAS-related protein RAB 94.5 0.017 5.8E-07 53.6 2.9 23 99-121 13-35 (195)
328 3t1o_A Gliding protein MGLA; G 94.5 0.018 6.2E-07 53.6 3.1 25 99-123 16-40 (198)
329 3bos_A Putative DNA replicatio 94.5 0.021 7.1E-07 55.2 3.6 27 96-122 51-77 (242)
330 1wf3_A GTP-binding protein; GT 94.5 0.019 6.6E-07 58.6 3.4 25 96-121 7-31 (301)
331 1moz_A ARL1, ADP-ribosylation 94.4 0.011 3.8E-07 54.6 1.5 23 97-119 18-40 (183)
332 2z43_A DNA repair and recombin 94.4 0.021 7.1E-07 59.0 3.6 35 86-120 95-130 (324)
333 1a7j_A Phosphoribulokinase; tr 94.4 0.01 3.4E-07 60.5 1.1 25 96-120 4-28 (290)
334 2g6b_A RAS-related protein RAB 94.4 0.019 6.4E-07 52.8 2.9 23 99-121 12-34 (180)
335 2a9k_A RAS-related protein RAL 94.4 0.019 6.5E-07 52.9 2.9 23 99-121 20-42 (187)
336 3b9p_A CG5977-PA, isoform A; A 94.3 0.02 6.9E-07 57.8 3.3 27 95-121 52-78 (297)
337 2y8e_A RAB-protein 6, GH09086P 94.3 0.017 5.8E-07 52.8 2.5 22 99-120 16-37 (179)
338 1z0f_A RAB14, member RAS oncog 94.3 0.019 6.7E-07 52.4 2.9 23 99-121 17-39 (179)
339 3con_A GTPase NRAS; structural 94.3 0.019 6.6E-07 53.4 2.9 23 99-121 23-45 (190)
340 2xb4_A Adenylate kinase; ATP-b 94.3 0.022 7.6E-07 55.2 3.4 22 99-120 2-23 (223)
341 1fnn_A CDC6P, cell division co 94.3 0.016 5.4E-07 60.6 2.5 29 95-123 40-70 (389)
342 3t5d_A Septin-7; GTP-binding p 94.3 0.017 5.7E-07 58.1 2.5 23 99-121 10-32 (274)
343 2efe_B Small GTP-binding prote 94.3 0.02 7E-07 52.6 2.9 23 99-121 14-36 (181)
344 2f6r_A COA synthase, bifunctio 94.3 0.02 6.8E-07 57.9 3.0 22 97-118 75-96 (281)
345 3iev_A GTP-binding protein ERA 94.3 0.022 7.7E-07 58.3 3.4 23 99-121 12-34 (308)
346 2dby_A GTP-binding protein; GD 94.3 0.019 6.4E-07 60.5 2.9 21 100-120 4-24 (368)
347 3ihw_A Centg3; RAS, centaurin, 94.3 0.021 7.1E-07 53.4 2.9 22 99-120 22-43 (184)
348 3a8t_A Adenylate isopentenyltr 94.3 0.028 9.7E-07 58.2 4.1 26 96-121 39-64 (339)
349 2qby_A CDC6 homolog 1, cell di 94.2 0.017 5.7E-07 60.2 2.5 29 95-123 43-71 (386)
350 3cbq_A GTP-binding protein REM 94.2 0.017 5.8E-07 54.6 2.3 22 99-120 25-46 (195)
351 2qmh_A HPR kinase/phosphorylas 94.2 0.037 1.3E-06 52.9 4.6 36 85-121 23-58 (205)
352 1nrj_B SR-beta, signal recogni 94.2 0.021 7.1E-07 54.6 2.9 23 99-121 14-36 (218)
353 3iby_A Ferrous iron transport 94.2 0.022 7.4E-07 56.8 3.1 23 99-121 3-25 (256)
354 2bov_A RAla, RAS-related prote 94.2 0.022 7.4E-07 53.7 2.9 23 99-121 16-38 (206)
355 1vg8_A RAS-related protein RAB 94.2 0.022 7.5E-07 53.8 2.9 23 99-121 10-32 (207)
356 4fcw_A Chaperone protein CLPB; 94.2 0.024 8.2E-07 57.5 3.4 27 98-124 48-74 (311)
357 1ksh_A ARF-like protein 2; sma 94.2 0.023 7.8E-07 52.7 3.0 26 96-121 17-42 (186)
358 2gf9_A RAS-related protein RAB 94.1 0.022 7.6E-07 53.1 2.9 23 99-121 24-46 (189)
359 2bme_A RAB4A, RAS-related prot 94.1 0.02 6.9E-07 53.0 2.5 23 99-121 12-34 (186)
360 4edh_A DTMP kinase, thymidylat 94.1 0.029 1E-06 54.3 3.7 29 95-123 4-32 (213)
361 1jbk_A CLPB protein; beta barr 94.1 0.029 1E-06 51.7 3.6 27 95-121 41-67 (195)
362 3tkl_A RAS-related protein RAB 94.1 0.023 7.9E-07 53.0 2.9 23 99-121 18-40 (196)
363 2xtp_A GTPase IMAP family memb 94.1 0.023 7.7E-07 56.3 2.9 23 99-121 24-46 (260)
364 3be4_A Adenylate kinase; malar 94.0 0.026 8.8E-07 54.5 3.2 25 97-121 5-29 (217)
365 3kkq_A RAS-related protein M-R 94.0 0.024 8.2E-07 52.3 2.9 23 99-121 20-42 (183)
366 2gf0_A GTP-binding protein DI- 94.0 0.022 7.4E-07 53.4 2.6 22 99-120 10-31 (199)
367 1m7b_A RND3/RHOE small GTP-bin 94.0 0.021 7.3E-07 53.0 2.5 23 99-121 9-31 (184)
368 1mh1_A RAC1; GTP-binding, GTPa 94.0 0.025 8.5E-07 52.2 2.9 22 99-120 7-28 (186)
369 1zbd_A Rabphilin-3A; G protein 94.0 0.027 9.3E-07 53.1 3.2 23 99-121 10-32 (203)
370 2fg5_A RAB-22B, RAS-related pr 94.0 0.022 7.6E-07 53.4 2.6 23 99-121 25-47 (192)
371 2cjw_A GTP-binding protein GEM 94.0 0.025 8.5E-07 53.3 2.9 22 99-120 8-29 (192)
372 2w58_A DNAI, primosome compone 94.0 0.031 1.1E-06 52.9 3.6 25 98-122 55-79 (202)
373 3a1s_A Iron(II) transport prot 94.0 0.027 9.2E-07 56.1 3.2 23 99-121 7-29 (258)
374 2il1_A RAB12; G-protein, GDP, 94.0 0.025 8.4E-07 53.1 2.8 23 99-121 28-50 (192)
375 3v9p_A DTMP kinase, thymidylat 93.9 0.023 7.7E-07 55.7 2.6 30 93-122 21-50 (227)
376 1z06_A RAS-related protein RAB 93.9 0.026 9E-07 52.6 2.9 22 99-120 22-43 (189)
377 1e4v_A Adenylate kinase; trans 93.9 0.027 9.1E-07 54.1 3.0 22 99-120 2-23 (214)
378 2a5j_A RAS-related protein RAB 93.8 0.028 9.4E-07 52.6 2.9 23 99-121 23-45 (191)
379 3d3q_A TRNA delta(2)-isopenten 93.8 0.03 1E-06 58.1 3.4 24 98-121 8-31 (340)
380 3oes_A GTPase rhebl1; small GT 93.8 0.024 8.3E-07 53.5 2.5 23 99-121 26-48 (201)
381 1ltq_A Polynucleotide kinase; 93.8 0.032 1.1E-06 56.5 3.5 22 98-119 3-24 (301)
382 2wsm_A Hydrogenase expression/ 93.8 0.027 9.1E-07 54.1 2.8 24 98-121 31-54 (221)
383 3exa_A TRNA delta(2)-isopenten 93.8 0.035 1.2E-06 56.9 3.8 25 97-121 3-27 (322)
384 3bwd_D RAC-like GTP-binding pr 93.8 0.028 9.7E-07 51.6 2.9 22 99-120 10-31 (182)
385 3i8s_A Ferrous iron transport 93.8 0.027 9.1E-07 56.7 2.9 23 99-121 5-27 (274)
386 1ak2_A Adenylate kinase isoenz 93.8 0.035 1.2E-06 54.1 3.6 26 96-121 15-40 (233)
387 2o52_A RAS-related protein RAB 93.8 0.028 9.5E-07 53.2 2.8 23 99-121 27-49 (200)
388 2qu8_A Putative nucleolar GTP- 93.8 0.029 9.8E-07 54.3 3.0 22 99-120 31-52 (228)
389 1zj6_A ADP-ribosylation factor 93.8 0.028 9.7E-07 52.2 2.8 22 99-120 18-39 (187)
390 1sky_E F1-ATPase, F1-ATP synth 93.8 0.034 1.2E-06 60.1 3.8 36 85-121 140-175 (473)
391 3bh0_A DNAB-like replicative h 93.8 0.015 5E-07 59.9 0.8 36 84-119 55-90 (315)
392 3lv8_A DTMP kinase, thymidylat 93.8 0.032 1.1E-06 55.0 3.2 28 96-123 26-53 (236)
393 1zd9_A ADP-ribosylation factor 93.8 0.029 1E-06 52.3 2.9 23 99-121 24-46 (188)
394 3dz8_A RAS-related protein RAB 93.8 0.026 8.8E-07 52.8 2.5 23 99-121 25-47 (191)
395 3t5g_A GTP-binding protein RHE 93.8 0.026 8.9E-07 52.0 2.5 22 99-120 8-29 (181)
396 2h57_A ADP-ribosylation factor 93.7 0.022 7.5E-07 53.2 2.0 23 99-121 23-45 (190)
397 4bas_A ADP-ribosylation factor 93.7 0.029 1E-06 52.4 2.9 23 99-121 19-41 (199)
398 2atv_A RERG, RAS-like estrogen 93.7 0.03 1E-06 52.6 2.9 23 99-121 30-52 (196)
399 3reg_A RHO-like small GTPase; 93.7 0.03 1E-06 52.4 2.9 23 99-121 25-47 (194)
400 4dhe_A Probable GTP-binding pr 93.7 0.015 5.2E-07 55.7 0.9 23 99-121 31-53 (223)
401 1njg_A DNA polymerase III subu 93.7 0.0084 2.9E-07 57.6 -1.1 24 99-122 47-70 (250)
402 3zvl_A Bifunctional polynucleo 93.7 0.032 1.1E-06 59.7 3.4 27 94-120 255-281 (416)
403 1x3s_A RAS-related protein RAB 93.7 0.031 1E-06 52.0 2.9 23 99-121 17-39 (195)
404 3umf_A Adenylate kinase; rossm 93.7 0.038 1.3E-06 53.7 3.6 27 94-120 26-52 (217)
405 2ew1_A RAS-related protein RAB 93.7 0.027 9.2E-07 53.6 2.5 23 99-121 28-50 (201)
406 2bcg_Y Protein YP2, GTP-bindin 93.7 0.027 9.2E-07 53.3 2.5 23 99-121 10-32 (206)
407 2p5s_A RAS and EF-hand domain 93.7 0.031 1E-06 52.7 2.9 23 99-121 30-52 (199)
408 2f7s_A C25KG, RAS-related prot 93.7 0.035 1.2E-06 53.0 3.3 23 99-121 27-49 (217)
409 3cph_A RAS-related protein SEC 93.6 0.031 1.1E-06 53.0 2.9 23 99-121 22-44 (213)
410 1jwy_B Dynamin A GTPase domain 93.6 0.031 1.1E-06 56.9 3.1 23 99-121 26-48 (315)
411 2h17_A ADP-ribosylation factor 93.6 0.027 9.1E-07 52.2 2.4 22 99-120 23-44 (181)
412 3llu_A RAS-related GTP-binding 93.6 0.033 1.1E-06 52.4 3.0 24 99-122 22-45 (196)
413 3cmw_A Protein RECA, recombina 93.6 0.11 3.9E-06 64.3 8.3 35 86-120 370-406 (1706)
414 2i1q_A DNA repair and recombin 93.5 0.04 1.4E-06 56.5 3.8 34 86-119 86-120 (322)
415 2q3h_A RAS homolog gene family 93.5 0.037 1.3E-06 52.0 3.2 23 99-121 22-44 (201)
416 2iwr_A Centaurin gamma 1; ANK 93.5 0.026 8.9E-07 51.8 2.0 22 99-120 9-30 (178)
417 4tmk_A Protein (thymidylate ki 93.5 0.038 1.3E-06 53.5 3.3 28 96-123 2-29 (213)
418 2h92_A Cytidylate kinase; ross 93.5 0.035 1.2E-06 53.3 3.0 25 97-121 3-27 (219)
419 3ld9_A DTMP kinase, thymidylat 93.5 0.044 1.5E-06 53.5 3.7 28 95-122 19-46 (223)
420 3c5c_A RAS-like protein 12; GD 93.5 0.036 1.2E-06 51.8 2.9 23 99-121 23-45 (187)
421 2fv8_A H6, RHO-related GTP-bin 93.5 0.031 1.1E-06 53.1 2.6 23 99-121 27-49 (207)
422 2j1l_A RHO-related GTP-binding 93.4 0.035 1.2E-06 53.1 2.9 22 99-120 36-57 (214)
423 3h4m_A Proteasome-activating n 93.4 0.034 1.2E-06 55.6 2.9 28 94-121 48-75 (285)
424 3tmk_A Thymidylate kinase; pho 93.4 0.04 1.4E-06 53.5 3.2 29 95-123 3-31 (216)
425 1gwn_A RHO-related GTP-binding 93.4 0.032 1.1E-06 53.2 2.5 23 99-121 30-52 (205)
426 2fh5_B SR-beta, signal recogni 93.3 0.037 1.3E-06 52.7 2.9 23 99-121 9-31 (214)
427 2p65_A Hypothetical protein PF 93.3 0.036 1.2E-06 51.0 2.7 28 95-122 41-68 (187)
428 2fu5_C RAS-related protein RAB 93.3 0.026 8.7E-07 52.1 1.7 22 99-120 10-31 (183)
429 2ocp_A DGK, deoxyguanosine kin 93.3 0.043 1.5E-06 53.7 3.4 26 96-121 1-26 (241)
430 3crm_A TRNA delta(2)-isopenten 93.3 0.042 1.4E-06 56.6 3.4 24 98-121 6-29 (323)
431 1l8q_A Chromosomal replication 93.3 0.03 1E-06 57.4 2.2 27 96-122 36-62 (324)
432 2aka_B Dynamin-1; fusion prote 93.2 0.034 1.2E-06 56.0 2.6 24 99-122 28-51 (299)
433 1p5z_B DCK, deoxycytidine kina 93.2 0.034 1.2E-06 55.3 2.5 27 95-121 22-48 (263)
434 3def_A T7I23.11 protein; chlor 93.2 0.038 1.3E-06 55.0 2.9 23 99-121 38-60 (262)
435 2b6h_A ADP-ribosylation factor 93.2 0.035 1.2E-06 52.1 2.4 22 99-120 31-52 (192)
436 2zts_A Putative uncharacterize 93.2 0.057 2E-06 52.5 4.1 33 86-118 18-51 (251)
437 1ypw_A Transitional endoplasmi 93.2 0.0099 3.4E-07 69.2 -1.8 33 90-122 504-536 (806)
438 2gco_A H9, RHO-related GTP-bin 93.2 0.037 1.3E-06 52.3 2.5 23 99-121 27-49 (201)
439 2g3y_A GTP-binding protein GEM 93.2 0.046 1.6E-06 52.6 3.3 22 99-120 39-60 (211)
440 4djt_A GTP-binding nuclear pro 93.1 0.024 8.3E-07 54.1 1.2 23 99-121 13-35 (218)
441 1h65_A Chloroplast outer envel 93.0 0.041 1.4E-06 54.9 2.8 23 99-121 41-63 (270)
442 2atx_A Small GTP binding prote 93.0 0.041 1.4E-06 51.4 2.6 22 99-120 20-41 (194)
443 3tqf_A HPR(Ser) kinase; transf 92.9 0.083 2.8E-06 49.3 4.4 34 85-119 5-38 (181)
444 3foz_A TRNA delta(2)-isopenten 92.9 0.059 2E-06 55.1 3.7 25 97-121 10-34 (316)
445 3cnl_A YLQF, putative uncharac 92.8 0.052 1.8E-06 54.3 3.1 25 98-122 100-124 (262)
446 3sr0_A Adenylate kinase; phosp 92.8 0.059 2E-06 51.8 3.4 23 99-121 2-24 (206)
447 1sxj_D Activator 1 41 kDa subu 92.7 0.016 5.4E-07 59.9 -0.9 36 86-121 45-82 (353)
448 2hf9_A Probable hydrogenase ni 92.7 0.049 1.7E-06 52.3 2.7 24 98-121 39-62 (226)
449 3cpj_B GTP-binding protein YPT 92.7 0.053 1.8E-06 52.1 3.0 23 99-121 15-37 (223)
450 2hup_A RAS-related protein RAB 92.6 0.05 1.7E-06 51.5 2.6 23 99-121 31-53 (201)
451 2yc2_C IFT27, small RAB-relate 92.6 0.026 8.8E-07 53.2 0.5 22 99-120 22-43 (208)
452 4dcu_A GTP-binding protein ENG 92.6 0.049 1.7E-06 58.9 2.8 22 99-120 25-46 (456)
453 2x77_A ADP-ribosylation factor 92.6 0.036 1.2E-06 51.6 1.5 21 99-119 24-44 (189)
454 2qz4_A Paraplegin; AAA+, SPG7, 92.5 0.063 2.2E-06 52.8 3.3 27 95-121 37-63 (262)
455 2r62_A Cell division protease 92.4 0.017 5.6E-07 57.5 -1.2 32 88-121 37-68 (268)
456 3q3j_B RHO-related GTP-binding 92.4 0.06 2.1E-06 51.5 2.9 22 99-120 29-50 (214)
457 4gzl_A RAS-related C3 botulinu 92.4 0.054 1.8E-06 51.4 2.5 22 99-120 32-53 (204)
458 3eph_A TRNA isopentenyltransfe 92.4 0.066 2.3E-06 56.7 3.3 24 98-121 3-26 (409)
459 3cmu_A Protein RECA, recombina 92.3 0.28 9.6E-06 61.7 9.3 139 86-244 719-868 (2050)
460 2z4s_A Chromosomal replication 92.3 0.053 1.8E-06 58.4 2.7 78 218-298 211-295 (440)
461 2j0v_A RAC-like GTP-binding pr 92.1 0.06 2E-06 51.1 2.5 23 99-121 11-33 (212)
462 3n70_A Transport activator; si 92.0 0.083 2.8E-06 47.4 3.1 28 95-122 22-49 (145)
463 2orw_A Thymidine kinase; TMTK, 92.0 0.082 2.8E-06 49.7 3.2 23 96-118 2-25 (184)
464 2vhj_A Ntpase P4, P4; non- hyd 91.6 0.11 3.7E-06 53.4 3.9 33 87-119 113-145 (331)
465 3dm5_A SRP54, signal recogniti 91.5 0.089 3E-06 56.5 3.2 28 96-123 99-126 (443)
466 2chg_A Replication factor C sm 91.5 0.094 3.2E-06 49.4 3.1 23 99-121 40-62 (226)
467 3gmt_A Adenylate kinase; ssgci 91.5 0.097 3.3E-06 51.2 3.2 24 98-121 9-32 (230)
468 4hlc_A DTMP kinase, thymidylat 91.5 0.11 3.9E-06 49.7 3.6 26 97-122 2-27 (205)
469 1puj_A YLQF, conserved hypothe 91.3 0.11 3.7E-06 52.5 3.4 25 97-121 120-144 (282)
470 2v1u_A Cell division control p 91.3 0.081 2.8E-06 54.9 2.6 27 95-121 42-68 (387)
471 3syl_A Protein CBBX; photosynt 91.0 0.11 3.8E-06 52.4 3.3 27 95-121 65-91 (309)
472 3r7w_A Gtpase1, GTP-binding pr 91.0 0.12 4.1E-06 52.7 3.5 24 97-120 3-26 (307)
473 3th5_A RAS-related C3 botulinu 90.4 0.042 1.4E-06 51.9 0.0 22 99-120 32-53 (204)
474 3gj0_A GTP-binding nuclear pro 91.0 0.078 2.7E-06 50.8 1.9 22 99-120 17-39 (221)
475 1wxq_A GTP-binding protein; st 90.9 0.1 3.4E-06 55.5 2.9 23 99-121 2-24 (397)
476 3p32_A Probable GTPase RV1496/ 90.9 0.12 4.2E-06 53.8 3.5 27 96-122 78-104 (355)
477 2x2e_A Dynamin-1; nitration, h 90.8 0.078 2.7E-06 55.2 1.9 23 99-121 33-55 (353)
478 2hjg_A GTP-binding protein ENG 90.8 0.1 3.4E-06 56.1 2.8 23 99-121 5-27 (436)
479 1d2n_A N-ethylmaleimide-sensit 90.8 0.13 4.3E-06 51.2 3.3 26 95-120 62-87 (272)
480 3l0i_B RAS-related protein RAB 90.7 0.028 9.7E-07 53.0 -1.5 23 99-121 35-57 (199)
481 2qgz_A Helicase loader, putati 90.7 0.14 4.8E-06 52.3 3.6 25 97-121 152-176 (308)
482 1xwi_A SKD1 protein; VPS4B, AA 90.5 0.14 4.9E-06 52.5 3.5 27 95-121 43-69 (322)
483 3ec1_A YQEH GTPase; atnos1, at 90.5 0.12 3.9E-06 54.4 2.8 25 96-120 161-185 (369)
484 1lnz_A SPO0B-associated GTP-bi 90.4 0.14 4.7E-06 53.3 3.3 33 88-120 149-181 (342)
485 2v3c_C SRP54, signal recogniti 90.3 0.089 3E-06 56.5 1.8 25 98-122 100-124 (432)
486 1x6v_B Bifunctional 3'-phospho 90.3 0.15 5.2E-06 57.1 3.7 26 96-121 51-76 (630)
487 3geh_A MNME, tRNA modification 90.2 0.11 3.7E-06 56.4 2.4 25 96-120 223-247 (462)
488 2xau_A PRE-mRNA-splicing facto 90.2 0.091 3.1E-06 60.8 1.9 28 94-121 106-133 (773)
489 3t15_A Ribulose bisphosphate c 90.2 0.13 4.5E-06 52.0 2.9 26 96-121 35-60 (293)
490 1g8f_A Sulfate adenylyltransfe 90.1 0.14 4.8E-06 56.1 3.2 28 95-122 393-420 (511)
491 1ofh_A ATP-dependent HSL prote 90.0 0.15 5E-06 51.4 3.1 25 97-121 50-74 (310)
492 1m8p_A Sulfate adenylyltransfe 90.0 0.15 5.3E-06 56.7 3.5 27 95-121 394-420 (573)
493 1f5n_A Interferon-induced guan 90.0 0.12 4.2E-06 57.6 2.6 34 85-121 29-62 (592)
494 3uk6_A RUVB-like 2; hexameric 90.0 0.15 5.2E-06 52.8 3.2 28 95-122 68-95 (368)
495 2qpt_A EH domain-containing pr 90.0 0.13 4.5E-06 57.0 2.8 24 98-121 66-89 (550)
496 3hws_A ATP-dependent CLP prote 89.9 0.15 5.1E-06 53.2 3.1 26 96-121 50-75 (363)
497 3eie_A Vacuolar protein sortin 89.9 0.17 5.9E-06 51.8 3.5 27 95-121 49-75 (322)
498 3d8b_A Fidgetin-like protein 1 89.8 0.17 5.9E-06 52.7 3.5 27 95-121 115-141 (357)
499 3pvs_A Replication-associated 89.8 0.096 3.3E-06 56.5 1.5 33 89-121 40-74 (447)
500 2qby_B CDC6 homolog 3, cell di 89.7 0.17 5.7E-06 52.7 3.3 26 96-121 44-69 (384)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.3e-41 Score=355.96 Aligned_cols=204 Identities=22% Similarity=0.363 Sum_probs=179.3
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++|+.+ .+...+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 22 ~~mi~v~~ls~~y~~~-----------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~---G~I~i 87 (366)
T 3tui_C 22 KHMIKLSNITKVFHQG-----------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLV 87 (366)
T ss_dssp -CCEEEEEEEEEEECS-----------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEE
T ss_pred CceEEEEeEEEEeCCC-----------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCc---eEEEE
Confidence 3479999999999532 123569999999999999999999999999999999999999964 99999
Q ss_pred CCccCCC--h---hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cC
Q 006897 134 NCHQIKK--P---AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FV 204 (627)
Q Consensus 134 ~g~~~~~--~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~ 204 (627)
+|+++.. . ...|+.||||||++.+++.+||+||+.++...+ +.++++.+++++++|+.+||.+.+++ ++
T Consensus 88 ~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~--~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LS 165 (366)
T 3tui_C 88 DGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD--NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLS 165 (366)
T ss_dssp TTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSC
T ss_pred CCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchHhcCChhhCC
Confidence 9999743 2 235788999999999999999999999987543 44677888899999999999877654 55
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|||||| ||+|||+.++.+++++|++++++.|+|||++|||++ ++.++|||+++|++|++++
T Consensus 166 GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIE 244 (366)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999 999999999999999999998877999999999998 5889999999999999999
Q ss_pred eCCHHHHH
Q 006897 267 YGSLELLE 274 (627)
Q Consensus 267 ~G~~~~~~ 274 (627)
.|+++++.
T Consensus 245 ~g~~~ev~ 252 (366)
T 3tui_C 245 QDTVSEVF 252 (366)
T ss_dssp CCBHHHHH
T ss_pred EcCHHHHH
Confidence 99998874
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1e-40 Score=354.36 Aligned_cols=199 Identities=25% Similarity=0.403 Sum_probs=178.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+||||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~yg---------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~---G~I~i~G 64 (381)
T 3rlf_A 3 SVQLQNVTKAWG---------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS---GDLFIGE 64 (381)
T ss_dssp CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred EEEEEeEEEEEC---------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCC---eEEEECC
Confidence 589999999993 3569999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++......++.||||||++.++|.+||+||+.|+.+.+ +.++++.+++++++++.+||++..++ ++||||||
T Consensus 65 ~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRV 142 (381)
T 3rlf_A 65 KRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA--GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 142 (381)
T ss_dssp EECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT--TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHH
T ss_pred EECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHH
Confidence 997543344578999999999999999999999987653 45677888999999999999887665 45999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||++||+..+.++.+.|+++.++.|+|+|++|||++ ++..+||||++|++|+++..|+++++
T Consensus 143 aiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 999999999999999999998777999999999998 58999999999999999999999987
Q ss_pred HH
Q 006897 274 EE 275 (627)
Q Consensus 274 ~~ 275 (627)
.+
T Consensus 222 ~~ 223 (381)
T 3rlf_A 222 YH 223 (381)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.6e-41 Score=353.54 Aligned_cols=199 Identities=24% Similarity=0.417 Sum_probs=176.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 4 ~l~i~~ls~~y~---------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~---G~I~i~G 65 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS---GEISLSG 65 (359)
T ss_dssp CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred EEEEEeEEEEEC---------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECC
Confidence 699999999993 3569999999999999999999999999999999999999964 9999999
Q ss_pred ccC----CChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcc
Q 006897 136 HQI----KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDE 207 (627)
Q Consensus 136 ~~~----~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe 207 (627)
+++ ......++.+|||||+..+||.+||+||+.|+... .+.++++.+++++++++.+||++..++ ++|||
T Consensus 66 ~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~--~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq 143 (359)
T 3fvq_A 66 KTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN--GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQ 143 (359)
T ss_dssp EEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTT--SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHH
T ss_pred EECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHH--cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence 986 22234567899999999999999999999997533 234566778899999999999887765 45999
Q ss_pred ccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 208 ENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 208 ~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
||| ||+|||+..+.++++.|+++.++.|+|+|++|||++ ++..+||||++|++|+++..|+
T Consensus 144 ~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~ 222 (359)
T 3fvq_A 144 QQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTAS 222 (359)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeC
Confidence 999 999999999999999998887778999999999998 5899999999999999999999
Q ss_pred HHHHHH
Q 006897 270 LELLEE 275 (627)
Q Consensus 270 ~~~~~~ 275 (627)
++++.+
T Consensus 223 ~~el~~ 228 (359)
T 3fvq_A 223 PHELYR 228 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998753
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.7e-40 Score=336.87 Aligned_cols=201 Identities=23% Similarity=0.388 Sum_probs=173.2
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+. .+.+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 6 ~~l~i~~ls~~y~~--------------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~---G~I~~~ 68 (275)
T 3gfo_A 6 YILKVEELNYNYSD--------------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS---GRILFD 68 (275)
T ss_dssp EEEEEEEEEEECTT--------------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred cEEEEEEEEEEECC--------------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eEEEEC
Confidence 37999999999942 2359999999999999999999999999999999999999863 999999
Q ss_pred CccCC-C---hhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCC
Q 006897 135 CHQIK-K---PAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVG 205 (627)
Q Consensus 135 g~~~~-~---~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~g 205 (627)
|+++. . ...+++.+|||||++ ..+..+||+||+.++... .+.++++.+++++++++.+||++..++ ++|
T Consensus 69 G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSg 146 (275)
T 3gfo_A 69 NKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN--MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSF 146 (275)
T ss_dssp TEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred CEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCH
Confidence 99863 1 234678899999986 233468999999998753 344677778899999999999877664 559
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||||| ||+|||+.++..++++|++++++.|+|||++|||++. +.++|||+++|++|++++.
T Consensus 147 GqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEE
Confidence 99999 9999999999999999999973349999999999994 7889999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+++++.+
T Consensus 226 g~~~~~~~ 233 (275)
T 3gfo_A 226 GNPKEVFA 233 (275)
T ss_dssp ECHHHHTH
T ss_pred CCHHHHhc
Confidence 99988743
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.9e-39 Score=330.51 Aligned_cols=198 Identities=25% Similarity=0.412 Sum_probs=172.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++++|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 24 ~l~i~~l~~~y~---------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~---G~I~~~g 85 (263)
T 2olj_A 24 MIDVHQLKKSFG---------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDG 85 (263)
T ss_dssp SEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEEeEEEEEC---------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC---cEEEECC
Confidence 699999999993 3469999999999999999999999999999999999999863 9999999
Q ss_pred ccCC----ChhhhcccEEEEccCCCCCCCCCHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCc
Q 006897 136 HQIK----KPAQLRKICGFVAQEDNLLPLLTVKETLMFSA-NFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGD 206 (627)
Q Consensus 136 ~~~~----~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gG 206 (627)
+++. ....+++.+|||||++.+++.+||+||+.++. .. .+.++++.+++++++++.+||.+..++ ++||
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG 163 (263)
T 2olj_A 86 INLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV--RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGG 163 (263)
T ss_dssp EESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHH
T ss_pred EECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHH
Confidence 8863 12345678999999999999999999999964 22 233455667789999999999876654 5699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|||| ||+|||+.++.++++.|++++++ |+|||++|||++ ++.++||++++|++|++++.|
T Consensus 164 qkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g 241 (263)
T 2olj_A 164 QAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEG 241 (263)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999 99999999999999999999765 999999999998 488899999999999999999
Q ss_pred CHHHHHH
Q 006897 269 SLELLEE 275 (627)
Q Consensus 269 ~~~~~~~ 275 (627)
+++++.+
T Consensus 242 ~~~~~~~ 248 (263)
T 2olj_A 242 KPEDLFD 248 (263)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9987743
No 6
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.3e-39 Score=343.95 Aligned_cols=203 Identities=21% Similarity=0.382 Sum_probs=178.4
Q ss_pred CcceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE
Q 006897 53 TTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT 132 (627)
Q Consensus 53 ~~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~ 132 (627)
+..+|+++||+++|+ +++.+|+||||++++||+++|+||||||||||||+|+|+++|++ |+|.
T Consensus 11 ~~~~l~~~~l~~~y~--------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~ 73 (355)
T 1z47_A 11 GSMTIEFVGVEKIYP--------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK---GDVW 73 (355)
T ss_dssp CCEEEEEEEEEECCT--------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEE
T ss_pred CCceEEEEEEEEEEc--------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEE
Confidence 345899999999992 12358999999999999999999999999999999999999864 9999
Q ss_pred ECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccc
Q 006897 133 VNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEE 208 (627)
Q Consensus 133 i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~ 208 (627)
++|+++......++.+|||||+..++|.+||+||+.|+...+ +.++++.+++++++++.+||++..++ ++||||
T Consensus 74 i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~--~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~ 151 (355)
T 1z47_A 74 IGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK--RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQ 151 (355)
T ss_dssp ETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHH
T ss_pred ECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHH
Confidence 999986443345678999999999999999999999987543 34566778899999999999877664 569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+..+.++.+.|+++.++.|+|+|++|||++ ++..+|||+++|++|+++..|++
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~ 230 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 99 999999999999999999998766899999999998 58899999999999999999999
Q ss_pred HHHHH
Q 006897 271 ELLEE 275 (627)
Q Consensus 271 ~~~~~ 275 (627)
+++.+
T Consensus 231 ~~l~~ 235 (355)
T 1z47_A 231 EEVYE 235 (355)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88753
No 7
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-39 Score=344.53 Aligned_cols=199 Identities=22% Similarity=0.387 Sum_probs=176.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g 64 (362)
T 2it1_A 3 EIKLENIVKKFG---------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS---GKIYFDE 64 (362)
T ss_dssp CEEEEEEEEESS---------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred EEEEEeEEEEEC---------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCc---eEEEECC
Confidence 589999999993 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++.+....++.+|||||+..+||.+||+||+.|+...+ +.++++.+++++++++.+||++..++ ++||||||
T Consensus 65 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv 142 (362)
T 2it1_A 65 KDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR--KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRV 142 (362)
T ss_dssp EECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH
T ss_pred EECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHH
Confidence 987443334578999999999999999999999986543 34566777899999999999877654 56999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+..+.++.+.|+++.++.|+|+|++|||++ ++.++|||+++|++|+++..|+++++
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 143 AIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp HHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999998766899999999998 58899999999999999999999887
Q ss_pred HH
Q 006897 274 EE 275 (627)
Q Consensus 274 ~~ 275 (627)
.+
T Consensus 222 ~~ 223 (362)
T 2it1_A 222 YY 223 (362)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 8
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-39 Score=344.85 Aligned_cols=199 Identities=24% Similarity=0.390 Sum_probs=174.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g 64 (359)
T 2yyz_A 3 SIRVVNLKKYFG---------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS---GEIYFDD 64 (359)
T ss_dssp CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred EEEEEEEEEEEC---------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCc---cEEEECC
Confidence 589999999993 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++......++.+|||||+..+||.+||+||+.|+.+. .+.++++.+++++++++.+||++..++ ++||||||
T Consensus 65 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRv 142 (359)
T 2yyz_A 65 VLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRA--RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRV 142 (359)
T ss_dssp EECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSS--SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred EECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 98744333467899999999999999999999997532 233445556789999999999877664 56999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||++||+..+.++.+.|+++.++.|+|+|++|||++ ++..+|||+++|++|+++..|+++++
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 143 ALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999998766899999999998 58899999999999999999999987
Q ss_pred HH
Q 006897 274 EE 275 (627)
Q Consensus 274 ~~ 275 (627)
.+
T Consensus 222 ~~ 223 (359)
T 2yyz_A 222 YD 223 (359)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.3e-39 Score=326.76 Aligned_cols=203 Identities=24% Similarity=0.420 Sum_probs=169.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+. ..+.+|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 ~l~~~~l~~~y~~~~-----------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g 66 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE-----------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---GEVYIDN 66 (235)
T ss_dssp CEEEEEEEEEEEETT-----------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred CEEEEEEEEEeCCCC-----------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECC
Confidence 489999999995321 13469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhh---h-cccEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCccc-----cCCc
Q 006897 136 HQIKK--PAQ---L-RKICGFVAQEDNLLPLLTVKETLMFSANFRLK-GMSHKEKEDRVESLMDELGLTHV-----AGSF 203 (627)
Q Consensus 136 ~~~~~--~~~---~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~-----~~~~ 203 (627)
+++.. ..+ . ++.+|||||++.+++.+||+||+.++...+.. ..++++..+++.++++.+||.+. ..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 146 (235)
T 3tif_A 67 IKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQL 146 (235)
T ss_dssp EECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGS
T ss_pred EEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhC
Confidence 98643 222 2 34699999999999999999999998654321 33566777889999999999764 2456
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
+|||+|| ||+|||+.++.++++.|++++++.|+|||++|||++ +.++|||+++|++|+++
T Consensus 147 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVE 224 (235)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEE
Confidence 6999999 999999999999999999998766899999999997 35899999999999999
Q ss_pred eeCCHHHHH
Q 006897 266 HYGSLELLE 274 (627)
Q Consensus 266 ~~G~~~~~~ 274 (627)
+.++++++.
T Consensus 225 ~~~~~~~~~ 233 (235)
T 3tif_A 225 REEKLRGFD 233 (235)
T ss_dssp EEEECC---
T ss_pred EEcChhhhc
Confidence 998876643
No 10
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-39 Score=329.81 Aligned_cols=197 Identities=26% Similarity=0.394 Sum_probs=171.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++++|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 6 ~l~i~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~---G~i~~~g 67 (262)
T 1b0u_A 6 KLHVIDLHKRYG---------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GAIIVNG 67 (262)
T ss_dssp CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEeeEEEEEC---------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 699999999993 3469999999999999999999999999999999999999863 9999999
Q ss_pred ccCCC------------h---hhhcccEEEEccCCCCCCCCCHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHcCCccc
Q 006897 136 HQIKK------------P---AQLRKICGFVAQEDNLLPLLTVKETLMFSA-NFRLKGMSHKEKEDRVESLMDELGLTHV 199 (627)
Q Consensus 136 ~~~~~------------~---~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 199 (627)
+++.. . ..+++.+|||||++.+++.+||+||+.++. .. .+.++++.+++++++++.+||.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~ 145 (262)
T 1b0u_A 68 QNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDER 145 (262)
T ss_dssp EECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHH
T ss_pred EEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHh--cCCCHHHHHHHHHHHHHHcCCCch
Confidence 88631 1 235678999999999999999999999964 32 233455667889999999999877
Q ss_pred -cCC----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhh
Q 006897 200 -AGS----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKF 256 (627)
Q Consensus 200 -~~~----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i 256 (627)
.++ ++|||+|| ||+|||+.++..++++|++++++ |+|||++|||++ ++.++|||+
T Consensus 146 ~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~~~~~d~v 223 (262)
T 1b0u_A 146 AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG-FARHVSSHV 223 (262)
T ss_dssp HHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHH-HHHHHCSEE
T ss_pred hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEE
Confidence 654 56999999 99999999999999999999765 999999999998 488899999
Q ss_pred eeecCCeEEeeCCHHHHH
Q 006897 257 LILSRGSVVHYGSLELLE 274 (627)
Q Consensus 257 ~vL~~G~iv~~G~~~~~~ 274 (627)
++|++|++++.|+++++.
T Consensus 224 ~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 224 IFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp EEEETTEEEEEECHHHHH
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999998774
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.7e-39 Score=344.39 Aligned_cols=199 Identities=22% Similarity=0.375 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g 64 (372)
T 1g29_1 3 GVRLVDVWKVFG---------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR---GQIYIGD 64 (372)
T ss_dssp EEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred EEEEEeEEEEEC---------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCc---cEEEECC
Confidence 589999999993 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCC
Q 006897 136 HQIKK------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVG 205 (627)
Q Consensus 136 ~~~~~------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~g 205 (627)
+++.+ ....++.+|||||+..+||.+||+||+.|+...+ +.++++.+++++++++.+||++..++ ++|
T Consensus 65 ~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSG 142 (372)
T 1g29_1 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR--KVPRQEIDQRVREVAELLGLTELLNRKPRELSG 142 (372)
T ss_dssp EEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCH
T ss_pred EECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCH
Confidence 88632 2234578999999999999999999999987543 34566777899999999999877664 569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||||| ||++||+..+.++.+.|+++.++.|+|+|++|||++ ++..+|||+++|++|+++..
T Consensus 143 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~ 221 (372)
T 1g29_1 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQV 221 (372)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEe
Confidence 99999 999999999999999999998766899999999998 58899999999999999999
Q ss_pred CCHHHHHH
Q 006897 268 GSLELLEE 275 (627)
Q Consensus 268 G~~~~~~~ 275 (627)
|+++++.+
T Consensus 222 g~~~~l~~ 229 (372)
T 1g29_1 222 GSPDEVYD 229 (372)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99988753
No 12
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.6e-39 Score=343.95 Aligned_cols=199 Identities=20% Similarity=0.339 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 11 ~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g 72 (372)
T 1v43_A 11 EVKLENLTKRFG---------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRIYFGD 72 (372)
T ss_dssp CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEEEC---------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCc---eEEEECC
Confidence 599999999993 3469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++......++.+|||||+..+||.+||+||+.|+... .+.++++.+++++++++.+||++..++ ++||||||
T Consensus 73 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv 150 (372)
T 1v43_A 73 RDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI--KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV 150 (372)
T ss_dssp EECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH
T ss_pred EECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 98643333457899999999999999999999997432 234566777899999999999877654 56999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||++||+..+.++.+.|+++.++.|+|+|++|||++ ++.++|||+++|++|+++..|+++++
T Consensus 151 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 151 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999998766899999999998 58899999999999999999999987
Q ss_pred HH
Q 006897 274 EE 275 (627)
Q Consensus 274 ~~ 275 (627)
.+
T Consensus 230 ~~ 231 (372)
T 1v43_A 230 YL 231 (372)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 13
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.6e-39 Score=343.96 Aligned_cols=198 Identities=25% Similarity=0.370 Sum_probs=175.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLH--ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~--iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
+|+++||+++|+ ++. +|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.+
T Consensus 3 ~l~i~~l~~~y~---------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i 64 (353)
T 1oxx_K 3 RIIVKNVSKVFK---------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST---GELYF 64 (353)
T ss_dssp CEEEEEEEEEEG---------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSE---EEEEE
T ss_pred EEEEEeEEEEEC---------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEE
Confidence 589999999993 345 9999999999999999999999999999999999999864 99999
Q ss_pred CCccCCC-----hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cC
Q 006897 134 NCHQIKK-----PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FV 204 (627)
Q Consensus 134 ~g~~~~~-----~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~ 204 (627)
+|+++.. ....++.+|||||+..+++.+||+||+.|+... .+.++++.+++++++++.+||++..++ ++
T Consensus 65 ~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LS 142 (353)
T 1oxx_K 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN--MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELS 142 (353)
T ss_dssp TTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT--SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSC
T ss_pred CCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCC
Confidence 9988632 233567899999999999999999999997533 234566777899999999999877664 56
Q ss_pred CccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 205 GDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 205 gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
|||||| ||+|||+..+.++.+.|+++.++.|+|+|++|||++ ++.++|||+++|++|+++.
T Consensus 143 GGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~ 221 (353)
T 1oxx_K 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQ 221 (353)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999 999999999999999999998766899999999998 5889999999999999999
Q ss_pred eCCHHHHH
Q 006897 267 YGSLELLE 274 (627)
Q Consensus 267 ~G~~~~~~ 274 (627)
.|+++++.
T Consensus 222 ~g~~~~l~ 229 (353)
T 1oxx_K 222 VGKPEDLY 229 (353)
T ss_dssp EECHHHHH
T ss_pred EcCHHHHH
Confidence 99998875
No 14
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.4e-39 Score=327.95 Aligned_cols=197 Identities=21% Similarity=0.373 Sum_probs=172.0
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||++.|+ ++++|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++
T Consensus 10 ~~l~~~~l~~~~~---------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~ 71 (266)
T 4g1u_C 10 ALLEASHLHYHVQ---------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH---GECHLL 71 (266)
T ss_dssp CEEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS---CEEEET
T ss_pred ceEEEEeEEEEeC---------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEEC
Confidence 3799999999993 3569999999999999999999999999999999999999864 999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccc
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEE 208 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~ 208 (627)
|+++.. ..+.++.+||++|++.+++.+||+||+.++.... ..++.+++++++++.+||.+..++ ++||||
T Consensus 72 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~ 147 (266)
T 4g1u_C 72 GQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQ 147 (266)
T ss_dssp TEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHH
T ss_pred CEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHH
Confidence 998743 3456778999999998888899999999875322 234456789999999999876654 569999
Q ss_pred cC------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 209 NR------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 209 qr------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
|| ||+|||+.++.+++++|++++++.|+|||++|||++ ++.++|||+++|++|++
T Consensus 148 QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i 226 (266)
T 4g1u_C 148 QRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKL 226 (266)
T ss_dssp HHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEE
Confidence 87 999999999999999999998776789999999998 58889999999999999
Q ss_pred EeeCCHHHHH
Q 006897 265 VHYGSLELLE 274 (627)
Q Consensus 265 v~~G~~~~~~ 274 (627)
++.|+++++.
T Consensus 227 ~~~g~~~~~~ 236 (266)
T 4g1u_C 227 VACGTPEEVL 236 (266)
T ss_dssp EEEECHHHHC
T ss_pred EEEcCHHHHh
Confidence 9999998873
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.4e-39 Score=324.58 Aligned_cols=200 Identities=28% Similarity=0.426 Sum_probs=173.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++.+|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 14 ~~l~i~~l~~~y~---------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~~ 75 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS---GIVTVF 75 (256)
T ss_dssp CCEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred CeEEEEEEEEEEC---------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEEC
Confidence 4799999999993 3469999999999999999999999999999999999999863 999999
Q ss_pred CccCCC-hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 135 CHQIKK-PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 135 g~~~~~-~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
|+++.. ....++.+|||||++.+++.+||+||+.++.... +.+.++.+++++++++.+||++..+ +++|||+|
T Consensus 76 g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~q 153 (256)
T 1vpl_A 76 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY--ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVR 153 (256)
T ss_dssp TEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHH
T ss_pred CEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc--CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHH
Confidence 998643 3456778999999999999999999999975433 2344555678999999999987655 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+++.|+++++ .|+|||++|||++ ++.++||++++|++|++++.|+++
T Consensus 154 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 231 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVE 231 (256)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHH
Confidence 9 9999999999999999999975 4899999999998 477889999999999999999998
Q ss_pred HHHHH
Q 006897 272 LLEET 276 (627)
Q Consensus 272 ~~~~~ 276 (627)
++.+.
T Consensus 232 ~~~~~ 236 (256)
T 1vpl_A 232 ELKER 236 (256)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87543
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.7e-39 Score=318.29 Aligned_cols=191 Identities=26% Similarity=0.409 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 4 ~l~~~~l~~~y~---------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 65 (224)
T 2pcj_A 4 ILRAENIKKVIR---------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE---GKVFLEG 65 (224)
T ss_dssp EEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred EEEEEeEEEEEC---------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECC
Confidence 699999999993 2469999999999999999999999999999999999999863 9999999
Q ss_pred ccCCC--hh---hhc-ccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCC
Q 006897 136 HQIKK--PA---QLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVG 205 (627)
Q Consensus 136 ~~~~~--~~---~~r-~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~g 205 (627)
+++.. .. .++ +.+|||||++.+++.+||+||+.++...+ +.++++.+++++++++.+||.+..+ +++|
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 143 (224)
T 2pcj_A 66 KEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM--GKPKKEAKERGEYLLSELGLGDKLSRKPYELSG 143 (224)
T ss_dssp EECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCH
T ss_pred EECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCH
Confidence 98643 11 233 67999999999999999999999976443 2344566778999999999987665 4569
Q ss_pred ccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEee
Q 006897 206 DEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 206 Ge~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
||||| ||+|||+.++..+++.|++++++ |+|||++|||++. + ++||++++|++|++++.
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~-~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHEREL-A-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHH-H-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEE
Confidence 99999 99999999999999999999875 9999999999873 5 89999999999999998
Q ss_pred CC
Q 006897 268 GS 269 (627)
Q Consensus 268 G~ 269 (627)
|+
T Consensus 221 g~ 222 (224)
T 2pcj_A 221 IT 222 (224)
T ss_dssp EE
T ss_pred ee
Confidence 85
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7.2e-39 Score=337.87 Aligned_cols=194 Identities=22% Similarity=0.379 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ ++ +|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 1 ml~~~~l~~~y~---------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~~~g 61 (348)
T 3d31_A 1 MIEIESLSRKWK---------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRILLDG 61 (348)
T ss_dssp CEEEEEEEEECS---------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred CEEEEEEEEEEC---------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCC---cEEEECC
Confidence 489999999992 34 9999999999999999999999999999999999999864 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr- 210 (627)
+++.+....++.+|||||+..+|+.+||+||+.|+...+. .+++ ++++++++.+||++..++ ++||||||
T Consensus 62 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~--~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRv 136 (348)
T 3d31_A 62 KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK--IKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRV 136 (348)
T ss_dssp EECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC--CCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHH
T ss_pred EECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC--CCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 9864433456789999999999999999999999875432 2222 779999999999877664 56999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||++||+..+.++.+.|+++.++.|+|+|++|||++ ++.++|||+++|++|+++..|+++++
T Consensus 137 alAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999998777999999999998 58899999999999999999999887
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 216 ~ 216 (348)
T 3d31_A 216 F 216 (348)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.6e-39 Score=327.25 Aligned_cols=198 Identities=19% Similarity=0.298 Sum_probs=169.6
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++++|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 6 ~~l~i~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~---G~i~~~ 67 (257)
T 1g6h_A 6 EILRTENIVKYFG---------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFE 67 (257)
T ss_dssp EEEEEEEEEEEET---------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred cEEEEeeeEEEEC---------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEEC
Confidence 3799999999993 3469999999999999999999999999999999999999863 999999
Q ss_pred CccCCC--h-hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHHcCCcccc
Q 006897 135 CHQIKK--P-AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-----------MSHKEKEDRVESLMDELGLTHVA 200 (627)
Q Consensus 135 g~~~~~--~-~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~-----------~~~~~~~~~v~~~l~~lgL~~~~ 200 (627)
|+++.. . ...++.+|||||++.+++.+||+||+.++......+ ..+++.+++++++++.+||++..
T Consensus 68 g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 147 (257)
T 1g6h_A 68 NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY 147 (257)
T ss_dssp TEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT
T ss_pred CEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh
Confidence 998643 1 234668999999999999999999999864320011 22345567899999999998766
Q ss_pred CC----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee
Q 006897 201 GS----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI 258 (627)
Q Consensus 201 ~~----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v 258 (627)
++ ++|||||| ||+|||+.++..+++.|++++++ |+|||++|||++ ++.++|||+++
T Consensus 148 ~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 148 DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCS-TTGGGCSEEEE
T ss_pred CCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHhCCEEEE
Confidence 54 56999999 99999999999999999999765 999999999998 47889999999
Q ss_pred ecCCeEEeeCCHHH
Q 006897 259 LSRGSVVHYGSLEL 272 (627)
Q Consensus 259 L~~G~iv~~G~~~~ 272 (627)
|++|++++.|++++
T Consensus 226 l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 226 MFNGQIIAEGRGEE 239 (257)
T ss_dssp EETTEEEEEEESHH
T ss_pred EECCEEEEEeCHHH
Confidence 99999999999887
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-38 Score=318.42 Aligned_cols=197 Identities=23% Similarity=0.327 Sum_probs=167.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
++|+++||+++|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 5 ~~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~ 66 (240)
T 1ji0_A 5 IVLEVQSLHVYYG---------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK---GKIIFN 66 (240)
T ss_dssp EEEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred ceEEEEeEEEEEC---------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEC
Confidence 3799999999993 2469999999999999999999999999999999999999863 999999
Q ss_pred CccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcC-Ccccc----CCcCCc
Q 006897 135 CHQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG-LTHVA----GSFVGD 206 (627)
Q Consensus 135 g~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~----~~~~gG 206 (627)
|+++.. ..+ .++.+|||||++.+++.+||+||+.++... ....++.+++++++++.++ |.+.. .+++||
T Consensus 67 g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~---~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgG 143 (240)
T 1ji0_A 67 GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN---RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGG 143 (240)
T ss_dssp TEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT---CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHH
T ss_pred CEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhc---CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHH
Confidence 998643 222 345699999999999999999999986311 1223445677889999994 86554 456699
Q ss_pred cccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 207 EENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 207 e~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
|||| ||+|||+.++..+++.|+++++ .|+|||++|||++ ++.++|||+++|++|++++.|
T Consensus 144 q~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g 221 (240)
T 1ji0_A 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEG 221 (240)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 9999 9999999999999999999976 5899999999998 488999999999999999999
Q ss_pred CHHHHH
Q 006897 269 SLELLE 274 (627)
Q Consensus 269 ~~~~~~ 274 (627)
+++++.
T Consensus 222 ~~~~~~ 227 (240)
T 1ji0_A 222 KASELL 227 (240)
T ss_dssp EHHHHH
T ss_pred CHHHHh
Confidence 988764
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-38 Score=318.39 Aligned_cols=193 Identities=22% Similarity=0.355 Sum_probs=166.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ + +|+|+||++++ |+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 ml~~~~l~~~y~---------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 59 (240)
T 2onk_A 1 MFLKVRAEKRLG---------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNG 59 (240)
T ss_dssp CCEEEEEEEEET---------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETT
T ss_pred CEEEEEEEEEeC---------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECC
Confidence 378999999992 1 59999999999 9999999999999999999999999863 9999999
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr- 210 (627)
+++......++.+|||||++.+++.+||+||+.++... .+ ....+++++++++.+||.+..+ +++|||+||
T Consensus 60 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~--~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 135 (240)
T 2onk_A 60 ADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRN--VE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRV 135 (240)
T ss_dssp EECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTT--SC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHH
T ss_pred EECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHH--cC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHH
Confidence 98643334567899999999999999999999986422 11 2223678999999999987665 456999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
||+|||+.++..+++.|++++++.|+|||++|||++ ++.++||++++|++|++++.|+++++
T Consensus 136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999997656899999999998 48899999999999999999999877
Q ss_pred H
Q 006897 274 E 274 (627)
Q Consensus 274 ~ 274 (627)
.
T Consensus 215 ~ 215 (240)
T 2onk_A 215 F 215 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-37 Score=318.44 Aligned_cols=202 Identities=22% Similarity=0.342 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+. ...+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~----------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~I~~~g 68 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT----------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDG 68 (266)
T ss_dssp CEEEEEEEEEESTTS----------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred EEEEEEEEEEecCCC----------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEECC
Confidence 589999999994110 001469999999999999999999999999999999999999863 9999999
Q ss_pred ccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc--cccC----CcCCccc
Q 006897 136 HQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT--HVAG----SFVGDEE 208 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~----~~~gGe~ 208 (627)
+++... .+++.+|||+|++ .+++.+||+||+.++.... .+.++.+++++++++.+||+ +..+ +++|||+
T Consensus 69 ~~~~~~-~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 144 (266)
T 2yz2_A 69 ERKKGY-EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF---YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEK 144 (266)
T ss_dssp EECCHH-HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT---CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHH
T ss_pred EECchH-HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc---CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHH
Confidence 885432 5677899999995 4566789999999864221 12233456789999999998 7655 4569999
Q ss_pred cC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCH
Q 006897 209 NR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL 270 (627)
Q Consensus 209 qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 270 (627)
|| ||+|||+.++..+++.|++++++ |+|||++|||++. +.++||++++|++|++++.|++
T Consensus 145 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCH
Confidence 99 99999999999999999999765 8999999999984 7788999999999999999999
Q ss_pred HHHHHH
Q 006897 271 ELLEET 276 (627)
Q Consensus 271 ~~~~~~ 276 (627)
+++.+.
T Consensus 223 ~~~~~~ 228 (266)
T 2yz2_A 223 MEFLEK 228 (266)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 887643
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-37 Score=320.21 Aligned_cols=199 Identities=20% Similarity=0.266 Sum_probs=165.7
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ ++++|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++
T Consensus 20 ~~l~~~~l~~~y~---------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~---G~I~~~ 81 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ---------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS---GTVNLF 81 (279)
T ss_dssp EEEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred ceEEEEeEEEEEC---------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---eEEEEC
Confidence 4799999999993 3469999999999999999999999999999999999999864 999999
Q ss_pred CccCC--C--hhhhcccEEEEccCCCC--CCCCCHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHcCCccccCC----
Q 006897 135 CHQIK--K--PAQLRKICGFVAQEDNL--LPLLTVKETLMFSANF--RLKGMSHKEKEDRVESLMDELGLTHVAGS---- 202 (627)
Q Consensus 135 g~~~~--~--~~~~r~~ig~v~Q~~~l--~~~lTV~e~l~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---- 202 (627)
|+++. . ...+++.+|||+|++.+ .+.+||+||+.++... ...+...++..++++++++.+||++..++
T Consensus 82 g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 161 (279)
T 2ihy_A 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGY 161 (279)
T ss_dssp TBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred CEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhh
Confidence 98864 2 34567889999999653 3356999999885311 00111223456789999999999876654
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEE--EEEccCccHHHHHHhhhheeecCC
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTV--VLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Ti--i~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
++|||||| ||+|||+.++..++++|++++++ |+|| |++|||++ ++.++||++++|++|
T Consensus 162 LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~-~~~~~~d~v~~l~~G 239 (279)
T 2ihy_A 162 LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIE-EITANFSKILLLKDG 239 (279)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGG-GCCTTCCEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHH-HHHHhCCEEEEEECC
Confidence 56999999 99999999999999999999876 8999 99999998 477899999999999
Q ss_pred eEEeeCCHHHH
Q 006897 263 SVVHYGSLELL 273 (627)
Q Consensus 263 ~iv~~G~~~~~ 273 (627)
++++.|+++++
T Consensus 240 ~i~~~g~~~~~ 250 (279)
T 2ihy_A 240 QSIQQGAVEDI 250 (279)
T ss_dssp EEEEEEEHHHH
T ss_pred EEEEECCHHHH
Confidence 99999998776
No 23
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.4e-37 Score=319.78 Aligned_cols=190 Identities=26% Similarity=0.419 Sum_probs=159.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+. .+.+|+||||+|++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 53 ~i~~~~vs~~y~~--------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~G 115 (306)
T 3nh6_A 53 RIEFENVHFSYAD--------------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS---GCIRIDG 115 (306)
T ss_dssp CEEEEEEEEESST--------------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEEcCC--------------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC---cEEEECC
Confidence 5999999999942 2469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++.. ...+|+.||||||++.+|+ .||+|||.++.. ... .++++++++.+++.+..
T Consensus 116 ~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~----~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 116 QDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV----TAG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp EETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST----TCC----HHHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc----cCC----HHHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 99743 3567889999999999986 499999998631 112 23455566666554321
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| ||++||+.++..+.+.|+++.+ ++|+|+|||+++. +. .||+|++|+
T Consensus 187 ~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~-~~-~aD~i~vl~ 262 (306)
T 3nh6_A 187 RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLST-VV-NADQILVIK 262 (306)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHH-HH-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHH-HH-cCCEEEEEE
Confidence 3567999999 9999999999999999999863 6899999999984 54 599999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 263 ~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 263 DGCIVERGRHEALLS 277 (306)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998864
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8.3e-37 Score=309.36 Aligned_cols=197 Identities=24% Similarity=0.285 Sum_probs=160.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR--VRDQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl--~~~~~~~~G~i~i 133 (627)
+|+++||+++|+ ++.+|+||||++++||+++|+||||||||||+|+|+|+ ++|+ .|+|.+
T Consensus 3 ~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~ 64 (250)
T 2d2e_A 3 QLEIRDLWASID---------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILL 64 (250)
T ss_dssp EEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEE
T ss_pred eEEEEeEEEEEC---------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEE
Confidence 699999999993 34699999999999999999999999999999999998 6664 499999
Q ss_pred CCccCCC--hhh-hcccEEEEccCCCCCCCCCHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHcCC-ccccC----C-c
Q 006897 134 NCHQIKK--PAQ-LRKICGFVAQEDNLLPLLTVKETLMFSANF-RLKGMSHKEKEDRVESLMDELGL-THVAG----S-F 203 (627)
Q Consensus 134 ~g~~~~~--~~~-~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~-~~~~~~~~~~~~~v~~~l~~lgL-~~~~~----~-~ 203 (627)
+|+++.. ... .++.++||+|++.+++.+||+||+.++... .......++..++++++++.+|| .+..+ + +
T Consensus 65 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L 144 (250)
T 2d2e_A 65 DGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGF 144 (250)
T ss_dssp TTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC-
T ss_pred CCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 9998643 222 245699999999999999999999986532 11112334556789999999999 45443 4 8
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hhhheeecCCeE
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-ISKFLILSRGSV 264 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D~i~vL~~G~i 264 (627)
+|||||| ||+|||+.++..+++.|+++++ .|+|||++|||++. +..+ ||++++|++|++
T Consensus 145 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~-~~~~~~d~v~~l~~G~i 222 (250)
T 2d2e_A 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRI-LNYIQPDKVHVMMDGRV 222 (250)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGG-GGTSCCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHH-HHHhcCCEEEEEECCEE
Confidence 8999999 9999999999999999999964 58999999999984 6667 599999999999
Q ss_pred EeeCCHHH
Q 006897 265 VHYGSLEL 272 (627)
Q Consensus 265 v~~G~~~~ 272 (627)
++.|+++.
T Consensus 223 ~~~g~~~~ 230 (250)
T 2d2e_A 223 VATGGPEL 230 (250)
T ss_dssp EEEESHHH
T ss_pred EEEeCHHH
Confidence 99999873
No 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.3e-36 Score=303.75 Aligned_cols=188 Identities=26% Similarity=0.408 Sum_probs=160.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+. ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.
T Consensus 4 ~l~i~~l~~~y~~--------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~--- 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA--------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ---GKIE--- 63 (253)
T ss_dssp EEEEEEEEEEETT--------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSE---EEEE---
T ss_pred eEEEeeEEEEeCC--------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEE---
Confidence 6999999999931 3469999999999999999999999999999999999999863 9997
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHcCCccccCC----cCCcccc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK--GMSHKEKEDRVESLMDELGLTHVAGS----FVGDEEN 209 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~q 209 (627)
.++.+|||||++.+++.+||+||+.++...... ....++.+++++++++.+||++..++ ++|||+|
T Consensus 64 --------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q 135 (253)
T 2nq2_C 64 --------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQ 135 (253)
T ss_dssp --------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred --------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHH
Confidence 245799999999988889999999986422111 01234456789999999999876654 5699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLE 271 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 271 (627)
| ||+|||+.++..+++.|++++++.|+|||++|||++ ++.++||++++|++|+ ++.|+++
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~ 213 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETR 213 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHH
Confidence 9 999999999999999999997655899999999998 4788999999999999 9999987
Q ss_pred HH
Q 006897 272 LL 273 (627)
Q Consensus 272 ~~ 273 (627)
++
T Consensus 214 ~~ 215 (253)
T 2nq2_C 214 NI 215 (253)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.6e-36 Score=307.43 Aligned_cols=207 Identities=20% Similarity=0.324 Sum_probs=167.8
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCccceEE
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQDFDPRSIT 132 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~~~~G~i~ 132 (627)
.+|+++||+++|+ ++.+|+||||+|++||+++|+||||||||||+|+|+|++ +|+ .|+|.
T Consensus 19 ~~l~~~~l~~~y~---------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~ 80 (267)
T 2zu0_C 19 HMLSIKDLHVSVE---------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVE 80 (267)
T ss_dssp -CEEEEEEEEEET---------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEE
T ss_pred ceEEEEeEEEEEC---------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEE
Confidence 3799999999993 346999999999999999999999999999999999994 453 49999
Q ss_pred ECCccCCC--hhhh-cccEEEEccCCCCCCCCCHHHHHHHHHH-h----cCCCCCHHHHHHHHHHHHHHcCCc-cccC--
Q 006897 133 VNCHQIKK--PAQL-RKICGFVAQEDNLLPLLTVKETLMFSAN-F----RLKGMSHKEKEDRVESLMDELGLT-HVAG-- 201 (627)
Q Consensus 133 i~g~~~~~--~~~~-r~~ig~v~Q~~~l~~~lTV~e~l~~~~~-~----~~~~~~~~~~~~~v~~~l~~lgL~-~~~~-- 201 (627)
++|+++.. .... ++.++||+|++.+++.+||.||+.+... . .....+.++.+++++++++.+||. +..+
T Consensus 81 ~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 160 (267)
T 2zu0_C 81 FKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS 160 (267)
T ss_dssp ETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB
T ss_pred ECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence 99988632 2222 3469999999999999999999987542 1 111123445567899999999995 3332
Q ss_pred ---CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH-hhhheee
Q 006897 202 ---SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY-ISKFLIL 259 (627)
Q Consensus 202 ---~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~-~D~i~vL 259 (627)
+++|||||| ||+|||+.++..+++.|+++++ .|+|||++|||++. +..+ |||+++|
T Consensus 161 ~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~-~~~~~~d~v~~l 238 (267)
T 2zu0_C 161 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRI-LDYIKPDYVHVL 238 (267)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGG-GGTSCCSEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHH-HHhhcCCEEEEE
Confidence 378999999 9999999999999999999864 58999999999984 6665 8999999
Q ss_pred cCCeEEeeCCHHHHHHHHHhcCC
Q 006897 260 SRGSVVHYGSLELLEETINNLGY 282 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~~~~~~g~ 282 (627)
++|++++.|+++++.. +...++
T Consensus 239 ~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 239 YQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp ETTEEEEEECTTHHHH-HHTTTC
T ss_pred ECCEEEEEcCHHHHhh-hhhcch
Confidence 9999999999887653 334333
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.2e-36 Score=304.36 Aligned_cols=190 Identities=24% Similarity=0.446 Sum_probs=159.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++||+++|+. +++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 7 ~~~~~~l~~~y~~-------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~I~i~g 70 (247)
T 2ff7_A 7 DITFRNIRFRYKP-------------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN---GQVLIDG 70 (247)
T ss_dssp EEEEEEEEEESST-------------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred ceeEEEEEEEeCC-------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 6899999999931 12469999999999999999999999999999999999999863 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++.. ...+++.+|||||++.+++ .||+||+.++. .... +++++++++.+++.+..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~ 141 (247)
T 2ff7_A 71 HDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----PGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE 141 (247)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----TTCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST
T ss_pred EEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----CCCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC
Confidence 98643 3456778999999998887 59999998752 1112 34567778888876432
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.+++|||||| ||+|||+.++..+++.|++++ .|+|||++|||++. + +.||++++|+
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~~-~-~~~d~v~~l~ 217 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLST-V-KNADRIIVME 217 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGGG-G-TTSSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHH-H-HhCCEEEEEE
Confidence 4677999999 999999999999999999994 38999999999984 5 4699999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|++++.|+++++.
T Consensus 218 ~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 218 KGKIVEQGKHKELL 231 (247)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988764
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.3e-36 Score=311.21 Aligned_cols=199 Identities=22% Similarity=0.333 Sum_probs=162.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+ +.+.+|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 16 ~l~~~~l~~~y~~~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~---G~I~~~g 80 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH------------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDG 80 (271)
T ss_dssp CEEEEEEEECCTTC------------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEEeCCC------------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECC
Confidence 69999999999421 12469999999999999999999999999999999999999863 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHH-----HHHHHHHHHHHc--CCcccc----CC
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKE-----KEDRVESLMDEL--GLTHVA----GS 202 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~----~~ 202 (627)
+++.. ...+++.+|||||++.+++ .||+||+.++.. ... ..++ ....++++++.+ ||++.. .+
T Consensus 81 ~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~ 156 (271)
T 2ixe_A 81 EPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLT--RTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ 156 (271)
T ss_dssp EEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCS--SCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTT
T ss_pred EEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcc--cCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCC
Confidence 88632 3446778999999998887 599999998631 111 1011 123456778887 665544 46
Q ss_pred cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 203 FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 203 ~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
++|||+|| ||+|||+.++..+++.|++++++.|+|||++|||++. +. .||++++|++|++
T Consensus 157 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~~-~~d~v~~l~~G~i 234 (271)
T 2ixe_A 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-AE-RAHHILFLKEGSV 234 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-HT-TCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEE
Confidence 77999999 9999999999999999999865568999999999973 54 5999999999999
Q ss_pred EeeCCHHHHHH
Q 006897 265 VHYGSLELLEE 275 (627)
Q Consensus 265 v~~G~~~~~~~ 275 (627)
++.|+++++.+
T Consensus 235 ~~~g~~~~l~~ 245 (271)
T 2ixe_A 235 CEQGTHLQLME 245 (271)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999988754
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.3e-35 Score=298.05 Aligned_cols=186 Identities=22% Similarity=0.319 Sum_probs=161.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++ .+|+|+||++++||+++|+||||||||||+|+|+|+++| + |+|.++|
T Consensus 4 ~l~~~~l~~~-------------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g 60 (249)
T 2qi9_C 4 VMQLQDVAES-------------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAG 60 (249)
T ss_dssp EEEEEEEEET-------------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETT
T ss_pred EEEEEceEEE-------------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECC
Confidence 6899999873 389999999999999999999999999999999999987 5 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
+++.. ...+++.+|||+|++.+++.+||+||+.++. ..... +++++++++.+||++..+ +++|||+|
T Consensus 61 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~---~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q 133 (249)
T 2qi9_C 61 QPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ---HDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQ 133 (249)
T ss_dssp EEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC---SSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHH
T ss_pred EECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh---ccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence 88632 3456778999999999999999999998752 11111 567899999999987665 45699998
Q ss_pred C-------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 210 R-------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 210 r-------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
| ||+|||+.++..+.+.|++++++ |+|||++|||++ ++.++||++++|++|++
T Consensus 134 rv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~-~~~~~~d~v~~l~~G~i 211 (249)
T 2qi9_C 134 RVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLN-HTLRHAHRAWLLKGGKM 211 (249)
T ss_dssp HHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 8 89999999999999999999765 899999999998 47899999999999999
Q ss_pred EeeCCHHHH
Q 006897 265 VHYGSLELL 273 (627)
Q Consensus 265 v~~G~~~~~ 273 (627)
++.|+++++
T Consensus 212 ~~~g~~~~~ 220 (249)
T 2qi9_C 212 LASGRREEV 220 (249)
T ss_dssp EEEEEHHHH
T ss_pred EEeCCHHHH
Confidence 999998776
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-36 Score=306.14 Aligned_cols=191 Identities=25% Similarity=0.397 Sum_probs=160.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+ +++.+|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 1 ml~~~~l~~~y~--------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 63 (243)
T 1mv5_A 1 MLSARHVDFAYD--------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDG 63 (243)
T ss_dssp CEEEEEEEECSS--------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETT
T ss_pred CEEEEEEEEEeC--------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECC
Confidence 479999999993 12458999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG------------ 201 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~------------ 201 (627)
+++.. ...+++.+|||||++.+++ .||+||+.++.. .... +++++++++.+++.+..+
T Consensus 64 ~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~ 135 (243)
T 1mv5_A 64 QPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE 135 (243)
T ss_dssp EESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST
T ss_pred EEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---CCCC----HHHHHHHHHHhChHHHHHhCccchhchhcc
Confidence 88643 2456778999999998887 499999987521 1111 345788889998876543
Q ss_pred ---CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 202 ---SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 202 ---~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
+++|||+|| ||+|||+.++..+++.|++++ + |+|||++|||++. + +.|||+++|+
T Consensus 136 ~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~-~-~~~d~v~~l~ 211 (243)
T 1mv5_A 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLST-I-VDADKIYFIE 211 (243)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHH-H-HHCSEEEEEE
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHH-H-HhCCEEEEEE
Confidence 567999999 999999999999999999996 4 8999999999973 5 5699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 212 ~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 212 KGQITGSGKHNELVA 226 (243)
T ss_dssp TTEECCCSCHHHHHH
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999987753
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.9e-35 Score=298.62 Aligned_cols=191 Identities=21% Similarity=0.365 Sum_probs=157.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+ ..+.+|+||||++++||+++|+||||||||||+|+|+|++++ . |+|.++|
T Consensus 17 ~l~i~~l~~~y~~~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~---G~I~i~g 80 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ------------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-E---GDIKIGG 80 (260)
T ss_dssp CEEEEEEEECCTTC------------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-E---EEEEETT
T ss_pred eEEEEEEEEEeCCC------------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-C---eEEEECC
Confidence 69999999999421 124599999999999999999999999999999999999875 2 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.. ...+++.+|||||++.+++ .||+||+.++. .... ++++.++++.+++.+.
T Consensus 81 ~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~ 151 (260)
T 2ghi_A 81 KNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGK----LDAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN 151 (260)
T ss_dssp EEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTC----TTCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS
T ss_pred EEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccC----CCCC----HHHHHHHHHHhCCHHHHHhccccccccccC
Confidence 88632 3456788999999999886 59999998752 1111 2345667777776432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..+++|||+|| ||+|||+.++..+++.|++++ + |+|||++|||++. + +.||++++|+
T Consensus 152 ~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~-~-~~~d~i~~l~ 227 (260)
T 2ghi_A 152 KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLST-I-SSAESIILLN 227 (260)
T ss_dssp SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGG-S-TTCSEEEEEE
T ss_pred CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHH-H-HhCCEEEEEE
Confidence 24677999999 999999999999999999985 3 7999999999984 5 4699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++..
T Consensus 228 ~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 228 KGKIVEKGTHKDLLK 242 (260)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.8e-35 Score=289.71 Aligned_cols=181 Identities=18% Similarity=0.304 Sum_probs=153.4
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
.+|+++||+++|+ + ++|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++
T Consensus 9 ~~l~~~~ls~~y~---------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~---G~I~~~ 69 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---GEIIYN 69 (214)
T ss_dssp CEEEEEEEEEESS---------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEET
T ss_pred ceEEEEEEEEEeC---------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEEC
Confidence 4799999999993 3 59999999999999999999999999999999999999863 999999
Q ss_pred CccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc---cCCcCCccccC-
Q 006897 135 CHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV---AGSFVGDEENR- 210 (627)
Q Consensus 135 g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~~gGe~qr- 210 (627)
|+++. ..++.+|||||++.+++.+||+||+.++...+ +. +.+ +++++++++.+||++. ..+++|||+||
T Consensus 70 g~~~~---~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~--~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv 142 (214)
T 1sgw_A 70 GVPIT---KVKGKIFFLPEEIIVPRKISVEDYLKAVASLY--GV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRV 142 (214)
T ss_dssp TEEGG---GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHT--TC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHH
T ss_pred CEEhh---hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhc--CC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHH
Confidence 98853 35778999999999999999999999975432 11 122 5678999999999765 22456999999
Q ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeE
Q 006897 211 -----------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 211 -----------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~i 264 (627)
||+|||+.++..+++.|++++++ |+|||++|||++ ++..+||+++++. |+|
T Consensus 143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHKYS-TKI 210 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGGGB-C--
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEeC-Ccc
Confidence 99999999999999999999765 899999999998 4788899988664 444
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.4e-35 Score=296.59 Aligned_cols=189 Identities=17% Similarity=0.265 Sum_probs=159.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+.+ ...+.+|+|+||+++ ||+++|+||||||||||+|+|+|++ |++ |+|.++|
T Consensus 1 ml~~~~l~~~y~~~-----------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~---G~I~~~g 64 (263)
T 2pjz_A 1 MIQLKNVGITLSGK-----------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYS---GNIFING 64 (263)
T ss_dssp CEEEEEEEEEEEEE-----------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCE---EEEEETT
T ss_pred CEEEEEEEEEeCCC-----------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCC---cEEEECC
Confidence 48999999999421 011469999999999 9999999999999999999999999 863 9999999
Q ss_pred ccCCChhhhcccEE-EEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cccC----CcCCcccc
Q 006897 136 HQIKKPAQLRKICG-FVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HVAG----SFVGDEEN 209 (627)
Q Consensus 136 ~~~~~~~~~r~~ig-~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~----~~~gGe~q 209 (627)
+++..... ++.+| ||||++.+ .+||+||+.++.... . ..+++++++++.+||+ +..+ +++|||||
T Consensus 65 ~~~~~~~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq 135 (263)
T 2pjz_A 65 MEVRKIRN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELK--G----LDRDLFLEMLKALKLGEEILRRKLYKLSAGQSV 135 (263)
T ss_dssp EEGGGCSC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHT--C----CCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHH
T ss_pred EECcchHH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhc--c----hHHHHHHHHHHHcCCChhHhcCChhhCCHHHHH
Confidence 87532222 67899 99999887 789999999875432 1 1245688999999998 6655 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhh-hheeecCCeEEeeCCH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYIS-KFLILSRGSVVHYGSL 270 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D-~i~vL~~G~iv~~G~~ 270 (627)
| ||+|||+.++..+++.|++++ . |||++|||++. +.++|| ++++|++|++++.|++
T Consensus 136 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~-~~~~~d~~i~~l~~G~i~~~g~~ 210 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHELDM-LNLYKEYKAYFLVGNRLQGPISV 210 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGG-GGGCTTSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHH-HHHhcCceEEEEECCEEEEecCH
Confidence 9 999999999999999999873 2 99999999984 778999 9999999999999999
Q ss_pred HHHH
Q 006897 271 ELLE 274 (627)
Q Consensus 271 ~~~~ 274 (627)
+++.
T Consensus 211 ~~l~ 214 (263)
T 2pjz_A 211 SELL 214 (263)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-35 Score=313.88 Aligned_cols=190 Identities=21% Similarity=0.272 Sum_probs=161.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..|+++||+++|+. +++.+|+||||+|++||+++|+||||||||||||+|+|+++ + +|+|.++
T Consensus 18 ~~i~~~~l~~~y~~-------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~ 80 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-------------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQID 80 (390)
T ss_dssp CCEEEEEEEEESSS-------------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEES
T ss_pred CeEEEEEEEEEecC-------------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEEC
Confidence 36999999999942 23469999999999999999999999999999999999986 4 3999999
Q ss_pred CccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----C------
Q 006897 135 CHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----S------ 202 (627)
Q Consensus 135 g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~------ 202 (627)
|+++.. ...+++.+|||||++.+|+ +||+||+.+.. . ..+++++++++.++|.+..+ .
T Consensus 81 G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~-----~----~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~ 150 (390)
T 3gd7_A 81 GVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA-----A----HSDQEIWKVADEVGLRSVIEQFPGKLDFVLV 150 (390)
T ss_dssp SCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC-----C----SCHHHHHHHHHHTTCHHHHTTSTTGGGCEEC
T ss_pred CEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc-----c----cCHHHHHHHHHHhCCHHHHhhcccccccccc
Confidence 998743 3456788999999999997 59999996421 1 12456888999999976543 2
Q ss_pred -----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee
Q 006897 203 -----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL 259 (627)
Q Consensus 203 -----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL 259 (627)
++|||||| ||++||+..+.++.+.|+++. .++|+|++|||++ ....||||++|
T Consensus 151 ~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e--~~~~aDri~vl 226 (390)
T 3gd7_A 151 DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIE--AMLECDQFLVI 226 (390)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSG--GGTTCSEEEEE
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHH--HHHhCCEEEEE
Confidence 78999999 999999999999999999863 4799999999986 35679999999
Q ss_pred cCCeEEeeCCHHHHHH
Q 006897 260 SRGSVVHYGSLELLEE 275 (627)
Q Consensus 260 ~~G~iv~~G~~~~~~~ 275 (627)
++|++++.|+++++.+
T Consensus 227 ~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 227 EENKVRQYDSILELYH 242 (390)
T ss_dssp ETTEEEEESSHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999998854
No 35
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.4e-33 Score=319.02 Aligned_cols=192 Identities=23% Similarity=0.375 Sum_probs=162.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ +++++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 341 ~i~~~~v~~~y~~-------------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g 404 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-------------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS---GSICLDG 404 (582)
T ss_pred eEEEEEEEEEcCC-------------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECC
Confidence 6999999999942 12469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++.+ ..++|+++|||||++.+|+. ||+||+.++.. +.. .+++++++++.+|+++..
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~ 476 (582)
T 3b5x_A 405 HDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---GEY----TREQIEQAARQAHAMEFIENMPQGLDTVIGE 476 (582)
T ss_pred EEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---CCC----CHHHHHHHHHHCCCHHHHHhCcccccchhcC
Confidence 98632 45678899999999999975 99999998631 111 235577888888776432
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.+++|||||| ||++||+.+++.+.+.|+++. .|+|+|++||+++. + +.|||+++|+
T Consensus 477 ~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~-~-~~~d~i~~l~ 552 (582)
T 3b5x_A 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLVIAHRLST-I-EQADEILVVD 552 (582)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HhCCEEEEEE
Confidence 3567999999 999999999999999999985 38999999999973 4 5799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 553 ~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 553 EGEIIERGRHADLLA 567 (582)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 36
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=7.8e-34 Score=320.81 Aligned_cols=191 Identities=26% Similarity=0.390 Sum_probs=160.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ +++++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 339 ~i~~~~v~~~y~~-------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g 402 (578)
T 4a82_A 339 RIDIDHVSFQYND-------------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS---GQILIDG 402 (578)
T ss_dssp CEEEEEEEECSCS-------------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEEcCC-------------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECC
Confidence 5999999999942 23469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.+ ..++|+++|||+|++.+|+. ||+||+.++. +..+ ++++.++++..++.+.
T Consensus 403 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 403 HNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----PTAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----SSCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----CCCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 98743 45678899999999999986 9999998852 1112 2446666666665432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..+++|||||| |||+||+.++..+.+.++++. .++|+|++|||++. + +.|||+++|+
T Consensus 474 ~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-~-~~~d~i~~l~ 549 (578)
T 4a82_A 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLST-I-THADKIVVIE 549 (578)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGG-T-TTCSEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 13567999999 999999999999999999984 37899999999984 4 5699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 550 ~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 550 NGHIVETGTHRELIA 564 (578)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998854
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.8e-34 Score=321.09 Aligned_cols=191 Identities=22% Similarity=0.348 Sum_probs=158.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ +++++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 341 ~i~~~~v~~~y~~-------------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~---G~i~i~g 404 (587)
T 3qf4_A 341 SVSFENVEFRYFE-------------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPER---GRVEVDE 404 (587)
T ss_dssp CEEEEEEEECSSS-------------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSE---EEEEESS
T ss_pred cEEEEEEEEEcCC-------------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---cEEEECC
Confidence 6999999999942 23469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC-----------ccc---
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL-----------THV--- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~--- 199 (627)
+++.+ ..++|+++|||||++.+|+. ||+||+.++. +..+. +++.++++..++ +..
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~ 475 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR----EDATD----DEIVEAAKIAQIHDFIISLPEGYDSRVER 475 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC----SSCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECS
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC----CCCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcC
Confidence 98743 45678899999999999976 9999998752 11122 233444444443 322
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..+++|||||| ||++||+.+++++.+.|+++. .|+|+|++||+++. + +.||||++|+
T Consensus 476 ~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~-~-~~~d~i~vl~ 551 (587)
T 3qf4_A 476 GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPT-A-LLADKILVLH 551 (587)
T ss_dssp SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHH-H-TTSSEEEEEE
T ss_pred CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHH-H-HhCCEEEEEE
Confidence 24567999999 999999999999999999974 48999999999983 4 6899999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 552 ~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 552 EGKVAGFGTHKELLE 566 (587)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998864
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.4e-33 Score=319.22 Aligned_cols=192 Identities=21% Similarity=0.336 Sum_probs=162.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ +++++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 341 ~i~~~~v~~~y~~-------------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~---G~i~~~g 404 (582)
T 3b60_A 341 DLEFRNVTFTYPG-------------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE---GHILMDG 404 (582)
T ss_dssp CEEEEEEEECSSS-------------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSE---EEEEETT
T ss_pred cEEEEEEEEEcCC-------------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCC---CeEEECC
Confidence 6999999999942 12469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++.+ ..++|+++|||||++.+++. ||+||+.++.. +..+ +++++++++.+++++..
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~ 476 (582)
T 3b60_A 405 HDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART---EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE 476 (582)
T ss_dssp EETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred EEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---CCCC----HHHHHHHHHHcCCHHHHHhccccccccccC
Confidence 98743 35678899999999999985 99999998521 1112 35577788877775432
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.+++|||||| ||++||+.++.++.+.|+++. + |+|+|++||+++. + +.|||+++|+
T Consensus 477 ~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~-~-~~~d~i~~l~ 552 (582)
T 3b60_A 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLST-I-EQADEIVVVE 552 (582)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGG-T-TTCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHH-H-HhCCEEEEEE
Confidence 3567999999 999999999999999999985 3 8999999999984 4 5799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 553 ~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 553 DGIIVERGTHSELLA 567 (582)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999998864
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.4e-33 Score=282.03 Aligned_cols=178 Identities=25% Similarity=0.397 Sum_probs=145.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+. +++++|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 6 ~l~~~~l~~~y~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-------------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE---GKIKHSG 69 (229)
T ss_dssp EEEEEEEEECSST-------------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEECS
T ss_pred eEEEEEEEEEeCC-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCc---cEEEECC
Confidence 7999999999942 13469999999999999999999999999999999999999864 9999987
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc---------------c
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV---------------A 200 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---------------~ 200 (627)
.+||++|++.+++. ||+||+.++.. ... .+.+++++.+++.+. .
T Consensus 70 -----------~i~~v~q~~~~~~~-tv~enl~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 128 (229)
T 2pze_A 70 -----------RISFCSQFSWIMPG-TIKENIIFGVS-----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128 (229)
T ss_dssp -----------CEEEECSSCCCCSB-CHHHHHHTTSC-----CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTC
T ss_pred -----------EEEEEecCCcccCC-CHHHHhhccCC-----cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCC
Confidence 38999999998885 99999987521 111 123334444444321 2
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHH-HHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIEL-LASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~-L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.+++|||||| ||+|||+.++..+++. ++++. .|+|||++|||++. + +.||++++|++
T Consensus 129 ~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~-~-~~~d~v~~l~~ 204 (229)
T 2pze_A 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEH-L-KKADKILILHE 204 (229)
T ss_dssp TTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHH-H-HHCSEEEEEET
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHH-H-HhCCEEEEEEC
Confidence 4677999999 9999999999999997 45653 37899999999873 5 56999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 205 G~i~~~g~~~~~~ 217 (229)
T 2pze_A 205 GSSYFYGTFSELQ 217 (229)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEECCHHHHH
Confidence 9999999988764
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.9e-33 Score=318.78 Aligned_cols=194 Identities=24% Similarity=0.401 Sum_probs=160.9
Q ss_pred EEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 57 l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
|+++||+++|+++ .++++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|+
T Consensus 342 i~~~~v~~~y~~~------------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~---G~i~~~g~ 406 (595)
T 2yl4_A 342 LEFKNVHFAYPAR------------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS---GTISLDGH 406 (595)
T ss_dssp EEEEEEEEECSSC------------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSE---EEEEETTE
T ss_pred EEEEEEEEEeCCC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---cEEEECCE
Confidence 9999999999421 12469999999999999999999999999999999999999864 99999999
Q ss_pred cCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc--------------
Q 006897 137 QIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA-------------- 200 (627)
Q Consensus 137 ~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------------- 200 (627)
++.+ ..++|+++|||+|++.+++. ||+||+.++.... .+..+++++++++.+|+++..
T Consensus 407 ~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~ 480 (595)
T 2yl4_A 407 DIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP-----SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480 (595)
T ss_dssp ETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST-----TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS
T ss_pred EhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc-----cccCHHHHHHHHHHcCCHHHHHhCcccccccccCC
Confidence 8743 35678899999999999875 9999999863110 012245678888888875431
Q ss_pred -CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 -GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 -~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
.+++|||||| ||++||+.+++.+.+.|+++.+ |+|+|++||+++. + +.|||+++|++
T Consensus 481 ~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~-~-~~~d~i~~l~~ 556 (595)
T 2yl4_A 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLST-I-KNANMVAVLDQ 556 (595)
T ss_dssp SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHH-H-HHSSEEEEEET
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 4567999999 9999999999999999999864 7899999999973 5 56999999999
Q ss_pred CeEEeeCCHHHHHH
Q 006897 262 GSVVHYGSLELLEE 275 (627)
Q Consensus 262 G~iv~~G~~~~~~~ 275 (627)
|++++.|+++++.+
T Consensus 557 G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 557 GKITEYGKHEELLS 570 (595)
T ss_dssp TEEEEEECSCC---
T ss_pred CEEEEECCHHHHHh
Confidence 99999999987753
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-33 Score=320.03 Aligned_cols=190 Identities=20% Similarity=0.369 Sum_probs=159.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|++ ++++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.++|
T Consensus 354 ~i~~~~v~~~y~~--------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g 416 (598)
T 3qf4_B 354 EIEFKNVWFSYDK--------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR---GQILVDG 416 (598)
T ss_dssp CEEEEEEECCSSS--------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEECCC--------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCC---eEEEECC
Confidence 5999999999942 2459999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
+++.+ ...+|+++|||||++.+|+. ||+||+.++. +..++ +++.++++.+++++..
T Consensus 417 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 417 IDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGN----PGATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSS----TTCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCC----CCCCH----HHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 98743 45678899999999999975 9999998752 11122 3355566555554321
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
.+++|||||| |||+||+.++..+.+.|+++. .|+|+|++||+++. + +.||+|++|+
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-~-~~~d~i~~l~ 563 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNT-I-KNADLIIVLR 563 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTH-H-HHCSEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 3567999999 999999999999999999985 38999999999984 5 5599999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 564 ~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 564 DGEIVEMGKHDELIQ 578 (598)
T ss_dssp SSSEEECSCHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998764
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=280.87 Aligned_cols=182 Identities=23% Similarity=0.398 Sum_probs=144.8
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|+. .++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ .|+|.++|
T Consensus 3 ~l~~~~l~~~y~~-------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g 66 (237)
T 2cbz_A 3 SITVRNATFTWAR-------------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG 66 (237)
T ss_dssp CEEEEEEEEESCT-------------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS
T ss_pred eEEEEEEEEEeCC-------------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC
Confidence 5899999999941 1246999999999999999999999999999999999999985 49999988
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHHHcCC---------ccccCCc
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVES---LMDELGL---------THVAGSF 203 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL---------~~~~~~~ 203 (627)
.+|||+|++.+ +.+||+||+.++.. . .. +..+++.+ +++.+++ .....++
T Consensus 67 -----------~i~~v~Q~~~~-~~~tv~enl~~~~~--~---~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 128 (237)
T 2cbz_A 67 -----------SVAYVPQQAWI-QNDSLRENILFGCQ--L---EE-PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNL 128 (237)
T ss_dssp -----------CEEEECSSCCC-CSEEHHHHHHTTSC--C---CT-THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCC
T ss_pred -----------EEEEEcCCCcC-CCcCHHHHhhCccc--c---CH-HHHHHHHHHHhhHHHHHhccccccccccCCCCCC
Confidence 38999999875 46899999988531 1 11 11122222 2333433 1233567
Q ss_pred CCccccC------------------CCCCCCHHHHHHHHHHHH---HHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 204 VGDEENR------------------GISGLDSTSALQVIELLA---SMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 204 ~gGe~qr------------------PtsgLD~~~~~~i~~~L~---~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
+|||+|| ||+|||+.++..+++.|+ ++. .|+|||++|||++. + +.||++++|++|
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~-~-~~~d~v~~l~~G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSY-L-PQVDVIIVMSGG 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTT-G-GGSSEEEEEETT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHH-H-HhCCEEEEEeCC
Confidence 7999999 999999999999999995 442 48999999999984 4 579999999999
Q ss_pred eEEeeCCHHHHHH
Q 006897 263 SVVHYGSLELLEE 275 (627)
Q Consensus 263 ~iv~~G~~~~~~~ 275 (627)
++++.|+++++.+
T Consensus 205 ~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 205 KISEMGSYQELLA 217 (237)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEeCCHHHHhh
Confidence 9999999988754
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.98 E-value=3.9e-33 Score=340.64 Aligned_cols=194 Identities=24% Similarity=0.387 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+++ .+.+||+||||+|++||.+||+||||||||||+++|.|++.|++ |+|.+||
T Consensus 1076 ~I~f~nVsf~Y~~~------------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~---G~I~iDG 1140 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER------------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG---GEIFIDG 1140 (1321)
T ss_dssp CEEEEEEEECCTTS------------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSS---SEEEETT
T ss_pred eEEEEEEEEeCCCC------------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCC---CEEEECC
Confidence 59999999999533 23469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.|+.+ .+.+|++++||||++.+|+. |++|||.|+.. +.+..++++.++++..++.+..
T Consensus 1141 ~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld------~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge 1213 (1321)
T 4f4c_A 1141 SEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD------PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGD 1213 (1321)
T ss_dssp EETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC------TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETT
T ss_pred EEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC------CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecC
Confidence 99854 57899999999999999987 99999987631 1122356688888888875432
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.+.+.|.+.|+++. .|+|+|+|+|+++. ...||||+||+
T Consensus 1214 ~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsT--i~~aD~I~Vld 1289 (1321)
T 4f4c_A 1214 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNT--VMNADCIAVVS 1289 (1321)
T ss_dssp TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSST--TTTCSEEEEES
T ss_pred CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHH--HHhCCEEEEEE
Confidence 2355899998 999999999999999999874 48999999999984 56799999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|+|++.|+++++.+
T Consensus 1290 ~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSSEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999875
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.97 E-value=9.7e-32 Score=328.37 Aligned_cols=191 Identities=23% Similarity=0.343 Sum_probs=164.0
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+|+|+.+ .++++|+|+||+|++||.+||+||||||||||+++|.|+++|.+ |+|.+||
T Consensus 415 ~I~~~nvsF~Y~~~------------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~---G~I~idG 479 (1321)
T 4f4c_A 415 DITVENVHFTYPSR------------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK---GKITIDG 479 (1321)
T ss_dssp CEEEEEEEECCSSS------------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSE---EEEEETT
T ss_pred cEEEEEeeeeCCCC------------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccccc---CcccCCC
Confidence 59999999999532 24579999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcccc-------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVA------------- 200 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------------- 200 (627)
.++.+ .+.+|++||||+|++.+|.. ||+|||.|+. +. ..++++.++++..++++..
T Consensus 480 ~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~----~~----~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 480 VDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGK----EG----ITREEMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTC----TT----CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred ccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhc----cc----chHHHHHHHHHHccchhHHHcCCCCCccEecC
Confidence 99753 56789999999999999976 9999999862 11 1245677777777764321
Q ss_pred --CCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 201 --GSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 201 --~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..++|||||| |||+||+.++..+.+.|+++. .|+|+|++||+++. .+.||+|++|+
T Consensus 551 ~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls~--i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLST--IRNADLIISCK 626 (1321)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTTT--TTTCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHHH--HHhCCEEEEee
Confidence 2456999999 999999999999999999986 48999999999984 68899999999
Q ss_pred CCeEEeeCCHHHHH
Q 006897 261 RGSVVHYGSLELLE 274 (627)
Q Consensus 261 ~G~iv~~G~~~~~~ 274 (627)
+|+|++.|+++|+.
T Consensus 627 ~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 627 NGQVVEVGDHRALM 640 (1321)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCeeeccCCHHHHH
Confidence 99999999999875
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.97 E-value=2.7e-31 Score=273.99 Aligned_cols=173 Identities=25% Similarity=0.393 Sum_probs=132.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||++.+ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ .|+|.++|
T Consensus 40 ~l~~~~l~~~~-----------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g 99 (290)
T 2bbs_A 40 SLSFSNFSLLG-----------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG 99 (290)
T ss_dssp ----------C-----------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS
T ss_pred eEEEEEEEEcC-----------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC
Confidence 69999999853 24899999999999999999999999999999999999985 39999987
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc---------------c
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV---------------A 200 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---------------~ 200 (627)
++|||||++.+++. ||+||+. +. . ... .++.++++.+++.+. .
T Consensus 100 -----------~i~~v~Q~~~l~~~-tv~enl~-~~--~---~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 157 (290)
T 2bbs_A 100 -----------RISFCSQNSWIMPG-TIKENII-GV--S---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157 (290)
T ss_dssp -----------CEEEECSSCCCCSS-BHHHHHH-TT--C---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----
T ss_pred -----------EEEEEeCCCccCcc-cHHHHhh-Cc--c---cch----HHHHHHHHHhChHHHHHhccccccchhcCcc
Confidence 38999999988885 9999997 32 1 111 123344444454321 2
Q ss_pred CCcCCccccC------------------CCCCCCHHHHHHHHHHH-HHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 201 GSFVGDEENR------------------GISGLDSTSALQVIELL-ASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 201 ~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L-~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
..++|||+|| ||+|||+.++..+++.+ +++. .|+|||++|||++. + +.||++++|++
T Consensus 158 ~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~~-~-~~~d~i~~l~~ 233 (290)
T 2bbs_A 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEH-L-KKADKILILHE 233 (290)
T ss_dssp CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHH-H-HHSSEEEEEET
T ss_pred CcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 4678999999 99999999999999974 5553 38999999999973 5 56999999999
Q ss_pred CeEEeeCCHHHHH
Q 006897 262 GSVVHYGSLELLE 274 (627)
Q Consensus 262 G~iv~~G~~~~~~ 274 (627)
|++++.|+++++.
T Consensus 234 G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 234 GSSYFYGTFSELQ 246 (290)
T ss_dssp TEEEEEECHHHHH
T ss_pred CeEEEeCCHHHHh
Confidence 9999999998874
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=2.6e-30 Score=315.01 Aligned_cols=192 Identities=22% Similarity=0.375 Sum_probs=158.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+.+ .+.++|+||||++++||++||+||||||||||+++|+|+++|++ |+|.++|
T Consensus 387 ~i~~~~v~~~y~~~------------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~---G~i~i~g 451 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR------------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD---GMVSIDG 451 (1284)
T ss_dssp CEEEEEEEECCSST------------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSE---EEEEETT
T ss_pred eEEEEEEEEEcCCC------------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECC
Confidence 59999999999532 23469999999999999999999999999999999999999864 9999999
Q ss_pred ccCC--ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc---------------
Q 006897 136 HQIK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--------------- 198 (627)
Q Consensus 136 ~~~~--~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--------------- 198 (627)
+++. +...+|+++|||+|++.+|+. ||+||+.++.. ..+.+ +++++++..++.+
T Consensus 452 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 522 (1284)
T 3g5u_A 452 QDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE----DVTMD----EIEKAVKEANAYDFIMKLPHQFDTLVGE 522 (1284)
T ss_dssp EEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS----SCCHH----HHHHHHHHTTCHHHHHHSTTGGGCCCSS
T ss_pred EEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC----CCCHH----HHHHHHHHhCcHHHHHhccccccccccC
Confidence 9874 346788899999999999986 99999999731 12222 3344444433321
Q ss_pred ccCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 199 VAGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
....++|||||| |||+||+.++..+.+.++++. .|+|+|++||+++. + +.||+|++|+
T Consensus 523 ~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-i-~~~d~i~vl~ 598 (1284)
T 3g5u_A 523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLST-V-RNADVIAGFD 598 (1284)
T ss_dssp SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHH-H-TTCSEEEECS
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 123567999999 999999999999999998875 48999999999983 5 5599999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 599 ~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 599 GGVIVEQGNHDELMR 613 (1284)
T ss_dssp SSCCCCEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998753
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=3.8e-30 Score=313.61 Aligned_cols=194 Identities=24% Similarity=0.366 Sum_probs=159.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||+++|+.+ .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|
T Consensus 1030 ~i~~~~v~~~y~~~------------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~---G~I~i~g 1094 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR------------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA---GSVFLDG 1094 (1284)
T ss_dssp CEEEEEEEBCCSCG------------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSE---EEEESSS
T ss_pred cEEEEEEEEECCCC------------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECC
Confidence 59999999999532 23469999999999999999999999999999999999999864 9999999
Q ss_pred ccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc--------------
Q 006897 136 HQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-------------- 199 (627)
Q Consensus 136 ~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------------- 199 (627)
+++.+ .+.+|+++|||||++.+|+ .||+||+.++... ...+ ++++.+.++..++.+.
T Consensus 1095 ~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~--~~~~----~~~i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1095 KEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS--RVVS----YEEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp SCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS--CCCC----HHHHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred EEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC--CCCC----HHHHHHHHHHhCcHHHHHhCccccccccCC
Confidence 99743 4668899999999998886 5999999875311 1112 2334555555555432
Q ss_pred -cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 200 -AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 200 -~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
...++|||||| ||+|||+.+++.+.+.|++.. .|+|+|++|||++. + +.||||++|+
T Consensus 1168 ~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~-i-~~~dri~vl~ 1243 (1284)
T 3g5u_A 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLST-I-QNADLIVVIQ 1243 (1284)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTTG-G-GSCSEEEEEE
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 13467999999 999999999999999998863 48999999999984 5 5699999999
Q ss_pred CCeEEeeCCHHHHHH
Q 006897 261 RGSVVHYGSLELLEE 275 (627)
Q Consensus 261 ~G~iv~~G~~~~~~~ 275 (627)
+|++++.|+++++.+
T Consensus 1244 ~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1244 NGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp TBEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998764
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=1.7e-28 Score=277.01 Aligned_cols=185 Identities=18% Similarity=0.190 Sum_probs=156.3
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+++++|+++.|+ + ..|+++||++++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 355 ~~~l~~~~l~~~~~---------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~ 415 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG---------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEW 415 (607)
T ss_dssp CEEEEECCEEEECS---------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---SCCCC
T ss_pred ceEEEEeceEEEec---------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEE
Confidence 45799999999983 1 26999999999999999999999999999999999999864 88864
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
++.+||+||+..+.+.+||.|++....... ....++++++++.+||.+..+ +++|||+|
T Consensus 416 -----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK------LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQ 478 (607)
T ss_dssp -----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH------HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHH
T ss_pred -----------eeEEEEEecCccCCCCCcHHHHHHhhhccC------CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence 246999999987777899999887641110 112356889999999987665 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC--CeEEeeCC
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR--GSVVHYGS 269 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~ 269 (627)
| ||+|||+.++..++++|++++++.|+|||++|||++ ++..+|||+++|++ |+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9 999999999999999999998667899999999998 48889999999986 88888999
Q ss_pred HHHHHH
Q 006897 270 LELLEE 275 (627)
Q Consensus 270 ~~~~~~ 275 (627)
++++..
T Consensus 558 p~~~~~ 563 (607)
T 3bk7_A 558 PMGMRE 563 (607)
T ss_dssp CEEHHH
T ss_pred HHHHHh
Confidence 988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=1.8e-28 Score=273.79 Aligned_cols=185 Identities=18% Similarity=0.190 Sum_probs=155.1
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...++++|+++.|+ + ..|+++||++++||++||+||||||||||+|+|+|+++|+. |+|.+
T Consensus 285 ~~~l~~~~l~~~~~---------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~ 345 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG---------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEW 345 (538)
T ss_dssp CEEEEECCEEEEET---------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---CCCCC
T ss_pred CeEEEEeeEEEEEC---------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEE
Confidence 45799999999993 1 36999999999999999999999999999999999999864 88864
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCcccc
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEEN 209 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~q 209 (627)
+..+|||+|+....+.+||.|++....... ....++++++++.+|+.+..+ .++|||||
T Consensus 346 -----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~q 408 (538)
T 1yqt_A 346 -----------DLTVAYKPQYIKADYEGTVYELLSKIDASK------LNSNFYKTELLKPLGIIDLYDREVNELSGGELQ 408 (538)
T ss_dssp -----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH------HTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHH
T ss_pred -----------CceEEEEecCCcCCCCCcHHHHHHhhhccC------CCHHHHHHHHHHHcCChhhhcCChhhCCHHHHH
Confidence 235999999987777889999887541111 011356788999999977655 45699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC--CeEEeeCC
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR--GSVVHYGS 269 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~ 269 (627)
| ||+|||+.++.++.++|++++++.|.|||++|||++ ++..+|||+++|++ |+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 9 999999999999999999997656899999999998 58899999999986 78888999
Q ss_pred HHHHHH
Q 006897 270 LELLEE 275 (627)
Q Consensus 270 ~~~~~~ 275 (627)
++++..
T Consensus 488 ~~~~~~ 493 (538)
T 1yqt_A 488 PMGMRE 493 (538)
T ss_dssp CEEHHH
T ss_pred HHHHHh
Confidence 987764
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=1.6e-27 Score=265.63 Aligned_cols=186 Identities=19% Similarity=0.210 Sum_probs=153.3
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
...++++|+++.|+ + ..|+++|+++++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 267 ~~~l~~~~l~~~~~---------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~ 327 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG---------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTP 327 (538)
T ss_dssp CEEEEECCEEEEET---------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSB---CCEES
T ss_pred cceEEEcceEEEEC---------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEE
Confidence 45799999999993 1 35888899999999999999999999999999999999964 99986
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCcccc
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEEN 209 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~q 209 (627)
++ +.++|++|+......+||.||+.+... .... ...+.++++++.+||.+..++ ++|||||
T Consensus 328 ~~----------~~i~~~~q~~~~~~~~tv~~~l~~~~~---~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~Q 392 (538)
T 3ozx_A 328 EK----------QILSYKPQRIFPNYDGTVQQYLENASK---DALS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQ 392 (538)
T ss_dssp SC----------CCEEEECSSCCCCCSSBHHHHHHHHCS---STTC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHH
T ss_pred CC----------eeeEeechhcccccCCCHHHHHHHhhh---hccc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHH
Confidence 54 348999999766667899999987421 1111 123457889999999876554 5699999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC--CeEEeeCC
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR--GSVVHYGS 269 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~ 269 (627)
| ||+|||+.++.+++++|++++++.|+|||++|||++ ++..+||||++|++ |.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 9 999999999999999999998777999999999998 58899999999986 56667777
Q ss_pred HHHHH
Q 006897 270 LELLE 274 (627)
Q Consensus 270 ~~~~~ 274 (627)
+.++.
T Consensus 472 ~~~~~ 476 (538)
T 3ozx_A 472 PVTLK 476 (538)
T ss_dssp CEEHH
T ss_pred hHHHH
Confidence 65543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.2e-26 Score=259.29 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=141.1
Q ss_pred ceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCC
Q 006897 85 HILKSVSFEARDS-----EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLP 159 (627)
Q Consensus 85 ~iL~~vsl~i~~G-----e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~ 159 (627)
.+++|+||++++| |++||+||||||||||+|+|+|+++|++ |+. +. +..++|++|+.....
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~---G~~------~~-----~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE---GQD------IP-----KLNVSMKPQKIAPKF 426 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSB---CCC------CC-----SCCEEEECSSCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCC---CcC------cc-----CCcEEEecccccccC
Confidence 4799999999999 7899999999999999999999999864 641 11 346999999976555
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC------------------CCCCCCH
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR------------------GISGLDS 217 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr------------------PtsgLD~ 217 (627)
..||+|++... .+. .. ...+.++++++.+||.+.++ +++|||+|| ||+|||+
T Consensus 427 ~~tv~e~~~~~--~~~-~~---~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~ 500 (608)
T 3j16_B 427 PGTVRQLFFKK--IRG-QF---LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500 (608)
T ss_dssp CSBHHHHHHHH--CSS-TT---TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCH
T ss_pred CccHHHHHHHH--hhc-cc---ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 67999987643 111 11 12345778999999987665 456999999 9999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC--CeEEeeCCHHHHHHH
Q 006897 218 TSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR--GSVVHYGSLELLEET 276 (627)
Q Consensus 218 ~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~~~ 276 (627)
.++.+++++|++++++.|+|||++|||++ ++..+|||+++|++ |+++..|+++++...
T Consensus 501 ~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 501 EQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999997666999999999998 58899999999986 899999999887654
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=2.7e-26 Score=263.73 Aligned_cols=186 Identities=22% Similarity=0.303 Sum_probs=117.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCC----ccceEEECCccC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLL---------------------RIISGRVRDQDF----DPRSITVNCHQI 138 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl---------------------~~L~Gl~~~~~~----~~G~i~i~g~~~ 138 (627)
+++|+||||+|++||++||+||||||||||+ +++.|+.+|+.. ..|.|.+++.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4689999999999999999999999999998 888888877521 136677777653
Q ss_pred CChhhhcccEEEEccCCC-------------------CCCCCCHHHHHHHHHHhcCCCCCHHHHH------HHHHHHHHH
Q 006897 139 KKPAQLRKICGFVAQEDN-------------------LLPLLTVKETLMFSANFRLKGMSHKEKE------DRVESLMDE 193 (627)
Q Consensus 139 ~~~~~~r~~ig~v~Q~~~-------------------l~~~lTV~e~l~~~~~~~~~~~~~~~~~------~~v~~~l~~ 193 (627)
. ...++.+|+|+|... .++.+||.||+.+...........+..+ ....++++.
T Consensus 111 ~--~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 S--RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred h--ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 2 112334555554322 3457899999987532211110111111 112245888
Q ss_pred cCCccc-----cCCcCCccccC--------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHH
Q 006897 194 LGLTHV-----AGSFVGDEENR--------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYR 248 (627)
Q Consensus 194 lgL~~~-----~~~~~gGe~qr--------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~ 248 (627)
+||.+. ..+++|||||| ||+|||+.++..++++|+++++ .|+|||+||||++.
T Consensus 189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~- 266 (670)
T 3ux8_A 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDT- 266 (670)
T ss_dssp TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCHHH-
T ss_pred cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH-
Confidence 998653 45677999998 9999999999999999999976 59999999999973
Q ss_pred HHHHhhhheee------cCCeEEeeCCHHHHH
Q 006897 249 ILQYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 249 i~~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
...||++++| ++|++++.|+++++.
T Consensus 267 -~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 267 -MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp -HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred -HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 4579999999 899999999998874
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.92 E-value=5.8e-25 Score=256.54 Aligned_cols=176 Identities=14% Similarity=0.193 Sum_probs=143.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|...|++++|+ ++.+|+|+||++++||+++|+||||||||||+|+|+| |+| +|
T Consensus 435 ~L~~~~ls~~yg---------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g 488 (986)
T 2iw3_A 435 DLCNCEFSLAYG---------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DG 488 (986)
T ss_dssp EEEEEEEEEEET---------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TT
T ss_pred eeEEeeEEEEEC---------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CC
Confidence 577789999993 3469999999999999999999999999999999994 322 33
Q ss_pred ccCCChhhhcccEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-cc----cCCcCCcccc
Q 006897 136 HQIKKPAQLRKICGFVAQED-NLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-HV----AGSFVGDEEN 209 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~----~~~~~gGe~q 209 (627)
.+.. .. .+++|++|+. .+++.+||.||+.+ . ..+. +++++++|+.+||. +. ...++|||||
T Consensus 489 ~~~~--~~--~~~~~v~q~~~~~~~~ltv~e~l~~--~--~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQ 555 (986)
T 2iw3_A 489 FPTQ--EE--CRTVYVEHDIDGTHSDTSVLDFVFE--S--GVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKM 555 (986)
T ss_dssp CCCT--TT--SCEEETTCCCCCCCTTSBHHHHHHT--T--CSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHH
T ss_pred Cccc--cc--eeEEEEcccccccccCCcHHHHHHH--h--hcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHH
Confidence 3311 11 2378999984 67888999999975 1 1111 56789999999994 33 3467799999
Q ss_pred C------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE-eeCCH
Q 006897 210 R------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV-HYGSL 270 (627)
Q Consensus 210 r------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~ 270 (627)
| ||+|||+.++..+.+.|++ .|+|||++|||++ ++.++||++++|++|+++ +.|++
T Consensus 556 RvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~ 630 (986)
T 2iw3_A 556 KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNF 630 (986)
T ss_dssp HHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCH
Confidence 9 9999999999999999987 3899999999998 488999999999999997 68999
Q ss_pred HHHHH
Q 006897 271 ELLEE 275 (627)
Q Consensus 271 ~~~~~ 275 (627)
+++.+
T Consensus 631 ~e~~~ 635 (986)
T 2iw3_A 631 TEFVK 635 (986)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=5.7e-26 Score=256.41 Aligned_cols=176 Identities=19% Similarity=0.257 Sum_probs=138.0
Q ss_pred eEEE--------EeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc
Q 006897 56 KVTV--------RNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFD 127 (627)
Q Consensus 56 ~l~~--------~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~ 127 (627)
.|++ +||+++|+. ...+|+|+| ++++||++||+||||||||||||+|+|+++|+.
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~--------------~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~-- 145 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV--------------NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL-- 145 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST--------------TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCT--
T ss_pred eEEEecCCccccCCeEEEECC--------------CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCC--
Confidence 4788 888888831 124899999 999999999999999999999999999999875
Q ss_pred cceE---------EECCccCCCh--h--hhcccEEEEccCCCCCC---CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006897 128 PRSI---------TVNCHQIKKP--A--QLRKICGFVAQEDNLLP---LLTVKETLMFSANFRLKGMSHKEKEDRVESLM 191 (627)
Q Consensus 128 ~G~i---------~i~g~~~~~~--~--~~r~~ig~v~Q~~~l~~---~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l 191 (627)
|++ .++|.++... . ..+..+++++|+..+.+ ..||.|++... +..+++++++
T Consensus 146 -G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-----------~~~~~~~~~L 213 (607)
T 3bk7_A 146 -CEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-----------DEVGKFEEVV 213 (607)
T ss_dssp -TTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-----------CCSSCHHHHH
T ss_pred -CccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-----------HHHHHHHHHH
Confidence 664 3455543111 1 12345889999743322 13999998631 0124578899
Q ss_pred HHcCCccccCC----cCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHH
Q 006897 192 DELGLTHVAGS----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRI 249 (627)
Q Consensus 192 ~~lgL~~~~~~----~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i 249 (627)
+.+||++..++ ++|||+|| ||++||+.++..+++.|+++++ .|+|||++|||++ .+
T Consensus 214 ~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~-~~ 291 (607)
T 3bk7_A 214 KELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLA-VL 291 (607)
T ss_dssp HHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHH-HH
T ss_pred HHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChH-HH
Confidence 99999876654 56999999 9999999999999999999976 4999999999998 48
Q ss_pred HHHhhhheeecCC
Q 006897 250 LQYISKFLILSRG 262 (627)
Q Consensus 250 ~~~~D~i~vL~~G 262 (627)
..+||||++|+++
T Consensus 292 ~~~adri~vl~~~ 304 (607)
T 3bk7_A 292 DYLSDVIHVVYGE 304 (607)
T ss_dssp HHHCSEEEEEESC
T ss_pred HhhCCEEEEECCC
Confidence 8899999999865
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.92 E-value=1.2e-25 Score=262.37 Aligned_cols=186 Identities=17% Similarity=0.250 Sum_probs=139.9
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
..+|+++||+++|+. ..+++|+|+||++++||++||+||||||||||+|+|+|+++|++ |+|.+
T Consensus 669 ~~mL~v~nLs~~Y~g-------------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~s---G~I~~ 732 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPG-------------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS---GEVYT 732 (986)
T ss_dssp SEEEEEEEEEECCTT-------------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSE---EEEEE
T ss_pred CceEEEEeeEEEeCC-------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEE
Confidence 457999999999942 12468999999999999999999999999999999999999864 99999
Q ss_pred CCccCCChhhhcccEEEEccCCCC----CCCCCHHHHHHHHHHhc-----------------------------------
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNL----LPLLTVKETLMFSANFR----------------------------------- 174 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l----~~~lTV~e~l~~~~~~~----------------------------------- 174 (627)
+|. ..+||++|++.. ....|+.|++.+.....
T Consensus 733 ~~~---------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~ 803 (986)
T 2iw3_A 733 HEN---------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIA 803 (986)
T ss_dssp CTT---------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEE
T ss_pred cCc---------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhh
Confidence 762 137777776421 12346666665421000
Q ss_pred ------------------------------C----------------------------------CCCCHHHHHHHHHHH
Q 006897 175 ------------------------------L----------------------------------KGMSHKEKEDRVESL 190 (627)
Q Consensus 175 ------------------------------~----------------------------------~~~~~~~~~~~v~~~ 190 (627)
. .+..+...+++++++
T Consensus 804 ~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~ 883 (986)
T 2iw3_A 804 GIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEH 883 (986)
T ss_dssp EEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHH
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 0 000001124568899
Q ss_pred HHHcCCcc-c-----cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 191 MDELGLTH-V-----AGSFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 191 l~~lgL~~-~-----~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
|+.+||.+ . ...++|||||| ||+|||+.+...+.+.|+++ |.|||++|||++
T Consensus 884 Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~e 959 (986)
T 2iw3_A 884 CSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSAE 959 (986)
T ss_dssp HHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCHH
T ss_pred HHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCHH
Confidence 99999964 2 24677999999 99999999999999888653 579999999998
Q ss_pred HHHHHHhhhheeecCCeEEeeCC
Q 006897 247 YRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 247 ~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
.+.++||++++|++|+++..|+
T Consensus 960 -~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 960 -FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp -HHTTTCCEEECCBTTBCCC---
T ss_pred -HHHHhCCEEEEEECCEEEEeCC
Confidence 4778999999999999988774
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.91 E-value=1.1e-25 Score=251.45 Aligned_cols=175 Identities=17% Similarity=0.220 Sum_probs=135.5
Q ss_pred EEE-EeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE----
Q 006897 57 VTV-RNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI---- 131 (627)
Q Consensus 57 l~~-~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i---- 131 (627)
.++ +||+++|+. ...+|+|+| +|++||++||+||||||||||+|+|+|+++|+. |++
T Consensus 21 ~~~~~~ls~~yg~--------------~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~---G~~~~~~ 82 (538)
T 1yqt_A 21 EQLEEDCVHRYGV--------------NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL---CGDNDSW 82 (538)
T ss_dssp ---CCCEEEECST--------------TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSH
T ss_pred hhHhcCcEEEECC--------------ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CccCcch
Confidence 456 699999931 124899999 999999999999999999999999999999875 664
Q ss_pred -----EECCccCCCh--h--hhcccEEEEccCCCCCCC---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc
Q 006897 132 -----TVNCHQIKKP--A--QLRKICGFVAQEDNLLPL---LTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199 (627)
Q Consensus 132 -----~i~g~~~~~~--~--~~r~~ig~v~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 199 (627)
.++|.++... . ..+..+++++|+..+++. .|+.|++... +..++++++++.+||++.
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~-----------~~~~~~~~~l~~lgl~~~ 151 (538)
T 1yqt_A 83 DGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA-----------DETGKLEEVVKALELENV 151 (538)
T ss_dssp HHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH-----------CSSSCHHHHHHHTTCTTT
T ss_pred hhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh-----------hHHHHHHHHHHHcCCChh
Confidence 3455543110 1 123458899997544332 3899988531 112457889999999876
Q ss_pred cC----CcCCccccC------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhe
Q 006897 200 AG----SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFL 257 (627)
Q Consensus 200 ~~----~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~ 257 (627)
.+ +++|||+|| ||++||+.++..+++.|+++++ .|+|||++|||++ ++.++|||++
T Consensus 152 ~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~-~~~~~~dri~ 229 (538)
T 1yqt_A 152 LEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLA-VLDYLSDIIH 229 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHH-HHHHHCSEEE
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEE
Confidence 55 456999999 9999999999999999999976 5999999999998 5889999999
Q ss_pred eecCC
Q 006897 258 ILSRG 262 (627)
Q Consensus 258 vL~~G 262 (627)
+|++|
T Consensus 230 vl~~~ 234 (538)
T 1yqt_A 230 VVYGE 234 (538)
T ss_dssp EEEEE
T ss_pred EEcCc
Confidence 99865
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.90 E-value=3.8e-24 Score=245.77 Aligned_cols=175 Identities=26% Similarity=0.348 Sum_probs=128.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCccceEEECCccCCChh
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS----------------------GRVRDQDFDPRSITVNCHQIKKPA 142 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~----------------------Gl~~~~~~~~G~i~i~g~~~~~~~ 142 (627)
.+|+||||+|++||++||+||||||||||+++|. |+..+ .|.+.+++.++....
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRTP 411 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSST
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCCC
Confidence 5899999999999999999999999999998764 22222 167777776642100
Q ss_pred --h-----------------------------------------hcccEEEEccCCCCCC--------------------
Q 006897 143 --Q-----------------------------------------LRKICGFVAQEDNLLP-------------------- 159 (627)
Q Consensus 143 --~-----------------------------------------~r~~ig~v~Q~~~l~~-------------------- 159 (627)
. .....|+++|+..+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 0 0011244444333222
Q ss_pred ------------CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCCccccC------------
Q 006897 160 ------------LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVGDEENR------------ 210 (627)
Q Consensus 160 ------------~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~gGe~qr------------ 210 (627)
.+||.||+.+... . ...+++.+.++.+||.. ...+++||||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~------~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFAS------I--PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTT------C--HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHH------h--hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 4799999987521 1 12345677888899853 235677999998
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHH
Q 006897 211 ---------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 211 ---------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
||+|||+.++.+++++|++++++ |+|||+||||++. + +.||||++| ++|++++.|+++++.
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~-~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDV-I-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHH-H-TTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH-H-HhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99999999999999999999764 9999999999973 4 679999999 899999999998874
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6e-23 Score=231.37 Aligned_cols=166 Identities=21% Similarity=0.263 Sum_probs=121.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE-----------ECCccCCC--hhhhcccE--E
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT-----------VNCHQIKK--PAQLRKIC--G 149 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~-----------i~g~~~~~--~~~~r~~i--g 149 (627)
..|++++ .+++||++||+||||||||||||+|+|+++|+. |+|. +.|.++.. .....+.+ .
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~---G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC---ceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 3677777 689999999999999999999999999999975 7762 23322110 01111222 2
Q ss_pred EEccCCCC------CCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC---------
Q 006897 150 FVAQEDNL------LPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR--------- 210 (627)
Q Consensus 150 ~v~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr--------- 210 (627)
+.+|.... -+..++.+++... . ++..++++++++.+||++..+ +++|||+||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~----~-----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLR----M-----EKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHH----C-----CSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhh----h-----hhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence 33443211 1123566655432 1 112457889999999987665 456999999
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE
Q 006897 211 ---------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV 265 (627)
Q Consensus 211 ---------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv 265 (627)
||++||+.++..+.+.|+++++ .|+|||++|||++ ++..+|||+++|++|..+
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLS-VLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCHH-HHHHHCSEEEEEESCTTT
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEeCCccc
Confidence 9999999999999999999975 5899999999998 588999999999887543
No 59
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=2.6e-22 Score=232.21 Aligned_cols=198 Identities=19% Similarity=0.230 Sum_probs=136.4
Q ss_pred cceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC-------CC-
Q 006897 54 TCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI-ISGRVR-------DQ- 124 (627)
Q Consensus 54 ~~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~-L~Gl~~-------~~- 124 (627)
...|+++|+++ .+|+||||+|++||++||+|+||||||||++. |+|+++ |.
T Consensus 500 ~~~L~v~~l~~--------------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~ 559 (842)
T 2vf7_A 500 AGWLELNGVTR--------------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPD 559 (842)
T ss_dssp SCEEEEEEEEE--------------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----
T ss_pred CceEEEEeeee--------------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 34799999974 15999999999999999999999999999996 775542 20
Q ss_pred --------------CCccc-------eEEECCccCCC-h-----------hhhcc---------cEEEEcc---------
Q 006897 125 --------------DFDPR-------SITVNCHQIKK-P-----------AQLRK---------ICGFVAQ--------- 153 (627)
Q Consensus 125 --------------~~~~G-------~i~i~g~~~~~-~-----------~~~r~---------~ig~v~Q--------- 153 (627)
....| .|.++++++.. + ..+|+ .+||.++
T Consensus 560 g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g 639 (842)
T 2vf7_A 560 PEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGG 639 (842)
T ss_dssp ------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTT
T ss_pred ccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCcccccccccccc
Confidence 00135 68889877521 1 01111 1223222
Q ss_pred -------------CCCCC------------------------CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC
Q 006897 154 -------------EDNLL------------------------PLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL 196 (627)
Q Consensus 154 -------------~~~l~------------------------~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 196 (627)
+..++ ...++.|++.+...-...-.......+++.++|+.+||
T Consensus 640 ~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL 719 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGL 719 (842)
T ss_dssp BCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTC
T ss_pred ccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCC
Confidence 11111 22344444422110000000011223578899999999
Q ss_pred ccc-----cCCcCCccccC---------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHH
Q 006897 197 THV-----AGSFVGDEENR---------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRIL 250 (627)
Q Consensus 197 ~~~-----~~~~~gGe~qr---------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~ 250 (627)
... ..+++|||+|| ||+|||+.++.+++++|+++++ .|.|||++|||++ ++
T Consensus 720 ~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVIvisHdl~-~i- 796 (842)
T 2vf7_A 720 GYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVIAVEHKMQ-VV- 796 (842)
T ss_dssp TTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHH-HH-
T ss_pred CcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHH-HH-
Confidence 753 24567999988 9999999999999999999986 5999999999998 36
Q ss_pred HHhhhheee------cCCeEEeeCCHHHHH
Q 006897 251 QYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 251 ~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
+.||+|++| ++|++++.|+++++.
T Consensus 797 ~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 797 AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 789999999 799999999998764
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=1.5e-21 Score=227.76 Aligned_cols=180 Identities=26% Similarity=0.357 Sum_probs=133.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCCCC---cc------ceEEECCccCCC-h----
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLL---------RIISGRVRDQDF---DP------RSITVNCHQIKK-P---- 141 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl---------~~L~Gl~~~~~~---~~------G~i~i~g~~~~~-~---- 141 (627)
..|+|||++|++||+++|+||||||||||+ +.+.|...+... .. +.+.++..++.. +
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 369999999999999999999999999997 444444332210 01 234454443210 0
Q ss_pred h--------------------------------------hhcccEEEEccCCCCCC------------------------
Q 006897 142 A--------------------------------------QLRKICGFVAQEDNLLP------------------------ 159 (627)
Q Consensus 142 ~--------------------------------------~~r~~ig~v~Q~~~l~~------------------------ 159 (627)
. ...+..|++.|+..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 00123578887766554
Q ss_pred --------CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-----ccCCcCCccccC----------------
Q 006897 160 --------LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-----VAGSFVGDEENR---------------- 210 (627)
Q Consensus 160 --------~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~gGe~qr---------------- 210 (627)
.+||.|++.|... ....+++.++|+.+||.. ...+++|||+||
T Consensus 758 g~~i~~vl~~tv~eal~f~~~--------~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~L 829 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN--------IPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTL 829 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT--------CHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEE
T ss_pred cCCHHHHhhCCHHHHHHHHhc--------chhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCE
Confidence 3678888877421 123456788999999964 345778999998
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHHH
Q 006897 211 -----GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLEE 275 (627)
Q Consensus 211 -----PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 275 (627)
||+|||+.++..+++.|+++++ .|.|||+|+||++. + +.||+|++| ++|++++.|+++++.+
T Consensus 830 LILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL~~-i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 830 YILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNLDV-I-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH-H-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-H-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 8999999999999999999976 58999999999973 4 569999999 8999999999998753
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.85 E-value=1.3e-22 Score=226.09 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=115.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE-----------EECCccCCCh--hhh--cccEEEEccC----
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI-----------TVNCHQIKKP--AQL--RKICGFVAQE---- 154 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i-----------~i~g~~~~~~--~~~--r~~ig~v~Q~---- 154 (627)
.++||++||+||||||||||+|+|+|+++|+. |+| .++|+++... ... ...+....|.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~---G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNF---GDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCT---TCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 45999999999999999999999999999974 877 5666654210 111 1234444444
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC----cCCccccC------------------CC
Q 006897 155 DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS----FVGDEENR------------------GI 212 (627)
Q Consensus 155 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----~~gGe~qr------------------Pt 212 (627)
+.++. .++.|++... +.+++++++++.+|+.+..++ ++|||+|| ||
T Consensus 99 ~~~~~-~~v~~~l~~~-----------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPt 166 (538)
T 3ozx_A 99 SKFLK-GTVNEILTKI-----------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPS 166 (538)
T ss_dssp GTTCC-SBHHHHHHHH-----------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred hhhcc-CcHHHHhhcc-----------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 33333 3888866421 112357789999999876654 55999999 99
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 213 SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 213 sgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
++||+.++..+.+.|++++ + |+|||++|||++ ++..+||+|++|++|.
T Consensus 167 s~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 167 SYLDVRERMNMAKAIRELL-K-NKYVIVVDHDLI-VLDYLTDLIHIIYGES 214 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCHH-HHHHHCSEEEEEEEET
T ss_pred ccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeChH-HHHhhCCEEEEecCCc
Confidence 9999999999999999995 3 899999999998 5899999999998754
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.85 E-value=9.4e-22 Score=227.91 Aligned_cols=189 Identities=24% Similarity=0.333 Sum_probs=138.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC---------CCC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS-GRV---------RDQ 124 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~-Gl~---------~~~ 124 (627)
..|+++|++. .+|+||||+|++||++||+|+||||||||+++|. |.+ .+.
T Consensus 628 ~~L~v~~l~~--------------------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G 687 (972)
T 2r6f_A 628 RWLEVVGARE--------------------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPG 687 (972)
T ss_dssp CEEEEEEECS--------------------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCC
T ss_pred eEEEEecCcc--------------------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 4688988752 2599999999999999999999999999999853 221 121
Q ss_pred CC--ccc------eEEECCccCCC-h----h-------hh---------cccEEEEccCCCCC-----------------
Q 006897 125 DF--DPR------SITVNCHQIKK-P----A-------QL---------RKICGFVAQEDNLL----------------- 158 (627)
Q Consensus 125 ~~--~~G------~i~i~g~~~~~-~----~-------~~---------r~~ig~v~Q~~~l~----------------- 158 (627)
.. ..| .|.+++.++.. + . .. .+.+||++|...+.
T Consensus 688 ~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~ 767 (972)
T 2r6f_A 688 EHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKI 767 (972)
T ss_dssp SCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEE
T ss_pred ceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceee
Confidence 10 012 47888877521 1 0 01 13457887753221
Q ss_pred -----C--------------------------------CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc
Q 006897 159 -----P--------------------------------LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA 200 (627)
Q Consensus 159 -----~--------------------------------~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~ 200 (627)
+ .+||.|++.|.. .. . ..+++.++|+.+||.. ..
T Consensus 768 em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~-----~~-~--~~~~~~~~L~~~gL~~~~l 839 (972)
T 2r6f_A 768 EMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA-----SI-P--KIKRKLETLYDVGLGYMKL 839 (972)
T ss_dssp CCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC-----SC-H--HHHHHHHHHHHTTCSSSBT
T ss_pred ehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh-----cc-h--hHHHHHHHHHHcCCCcccc
Confidence 1 357777776632 11 1 1234678999999976 33
Q ss_pred ----CCcCCccccC---------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhh
Q 006897 201 ----GSFVGDEENR---------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISK 255 (627)
Q Consensus 201 ----~~~~gGe~qr---------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~ 255 (627)
.+++|||+|| ||+|||+.++.+++++|+++++ .|.|||++|||++. + +.||+
T Consensus 840 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~-i-~~aDr 916 (972)
T 2r6f_A 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDV-I-KTADY 916 (972)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH-H-TTCSE
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHH-H-HhCCE
Confidence 4567999998 9999999999999999999976 58999999999973 4 68999
Q ss_pred heee------cCCeEEeeCCHHHHH
Q 006897 256 FLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 256 i~vL------~~G~iv~~G~~~~~~ 274 (627)
+++| ++|++++.|+++++.
T Consensus 917 IivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 917 IIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEcCCCCCCCCEEEEecCHHHHH
Confidence 9999 789999999998775
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.84 E-value=3.6e-21 Score=223.77 Aligned_cols=190 Identities=22% Similarity=0.317 Sum_probs=136.3
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCCCCCCccc
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS-G----RVRDQDFDPR 129 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~-G----l~~~~~~~~G 129 (627)
..|+++|++. .+|+||||+|++||++||+|+||||||||+++|. | .+.+.....|
T Consensus 646 ~~L~v~~l~~--------------------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G 705 (993)
T 2ygr_A 646 RQLTVVGARE--------------------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPG 705 (993)
T ss_dssp SEEEEEEECS--------------------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCC
T ss_pred ceEEEecCcc--------------------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCC
Confidence 4689998852 2599999999999999999999999999999853 2 2221100113
Q ss_pred -------------eEEECCccCCC-----hh-------hh---------cccEEEEccCCCCC-----------------
Q 006897 130 -------------SITVNCHQIKK-----PA-------QL---------RKICGFVAQEDNLL----------------- 158 (627)
Q Consensus 130 -------------~i~i~g~~~~~-----~~-------~~---------r~~ig~v~Q~~~l~----------------- 158 (627)
.|.+++.++.. +. .. .+.+||++|...+.
T Consensus 706 ~~~~i~G~~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~ 785 (993)
T 2ygr_A 706 RHTRVTGLDYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKI 785 (993)
T ss_dssp SEEEECCCTTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEE
T ss_pred ceeeecCccccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceee
Confidence 24555555410 00 01 13457777753221
Q ss_pred -----C--------------------------------CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc-cc
Q 006897 159 -----P--------------------------------LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH-VA 200 (627)
Q Consensus 159 -----~--------------------------------~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~ 200 (627)
+ .+||.|++.|... . . ..+++.++|+.+||.. ..
T Consensus 786 e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~-----~-~--~~~~~~~~L~~lgL~~~~l 857 (993)
T 2ygr_A 786 EMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP-----I-A--GVHRYLRTLVDVGLGYVRL 857 (993)
T ss_dssp CCTTSCCEEEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT-----C-H--HHHHHHHHHHHTTGGGSBT
T ss_pred hhhccccceeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc-----c-h--HHHHHHHHHHHcCCCcccc
Confidence 1 2567777765321 1 1 1234578999999976 33
Q ss_pred ----CCcCCccccC---------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhh
Q 006897 201 ----GSFVGDEENR---------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISK 255 (627)
Q Consensus 201 ----~~~~gGe~qr---------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~ 255 (627)
.+++|||+|| ||+|||+.++..++++|+++++ .|.|||++|||++. + +.||+
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~-i-~~aDr 934 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIVIEHNLDV-I-KTSDW 934 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH-H-TTCSE
T ss_pred cCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHH-H-HhCCE
Confidence 4567999988 9999999999999999999976 58999999999973 4 68999
Q ss_pred heee------cCCeEEeeCCHHHHHH
Q 006897 256 FLIL------SRGSVVHYGSLELLEE 275 (627)
Q Consensus 256 i~vL------~~G~iv~~G~~~~~~~ 275 (627)
+++| ++|++++.|+++++.+
T Consensus 935 IivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 935 IIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEECCCcCCCCCEEEEecCHHHHHh
Confidence 9999 7899999999988754
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.84 E-value=8.2e-25 Score=239.18 Aligned_cols=166 Identities=13% Similarity=0.157 Sum_probs=127.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc-e-EEECCccCCChhhhcccEEEEccCCC---CCCCCC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-S-ITVNCHQIKKPAQLRKICGFVAQEDN---LLPLLT 162 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G-~-i~i~g~~~~~~~~~r~~ig~v~Q~~~---l~~~lT 162 (627)
+++|+++++||+++|+||||||||||+|+|+|+.+|+ .| + |.++|. .++.++|+||+.. +.+.+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~-------~~~~i~~vpq~~~l~~~~~~~t 198 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD-------PQQPIFTVPGCISATPISDILD 198 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC-------TTSCSSSCSSCCEEEECCSCCC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC-------ccCCeeeeccchhhcccccccc
Confidence 4799999999999999999999999999999999885 39 8 999882 2577999999974 345679
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC--CcCCccccC-------------------------CCCCC
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG--SFVGDEENR-------------------------GISGL 215 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~~gGe~qr-------------------------PtsgL 215 (627)
|+||+ ++.... .+. ..++++.++++.+|+++..+ +++|||+|| ||++|
T Consensus 199 v~eni-~~~~~~-~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~L 273 (460)
T 2npi_A 199 AQLPT-WGQSLT-SGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQL 273 (460)
T ss_dssp TTCTT-CSCBCB-SSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGS
T ss_pred hhhhh-cccccc-cCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCccccc
Confidence 99998 653211 111 11234566788888876654 445888876 79999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEccCcc--H---HHHHHhhh-----heeec-CCeEEeeCCHHHHH
Q 006897 216 DSTSALQVIELLASMAKAKQRTVVLSIHQPS--Y---RILQYISK-----FLILS-RGSVVHYGSLELLE 274 (627)
Q Consensus 216 D~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~--~---~i~~~~D~-----i~vL~-~G~iv~~G~~~~~~ 274 (627)
|+. ...+.++++ +.++|+|+++|+.+ . ++.++||| |++|+ +|+++ .|+++++.
T Consensus 274 D~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 274 DEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp CSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred Chh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 998 444444443 45789999999987 2 36689999 99999 99999 99987663
No 65
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.82 E-value=2.5e-23 Score=204.15 Aligned_cols=172 Identities=12% Similarity=0.089 Sum_probs=110.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCC
Q 006897 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 82 ~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
+...+++| .++++||+++|+||||||||||+|+|+|+++... +.+.+.+.+. ....++.++|+||++.+++.+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~---~~~~~~~~~~--~~~~~~~i~~~~q~~~~~~~~ 79 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH---FSVSATTRAP--RPGEVDGVDYHFIDPTRFQQL 79 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCE---ECCCEESSCC--CTTCCBTTTBEECCHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceE---EcccccccCC--cccccCCCeeEecCHHHHHHH
Confidence 34568999 7999999999999999999999999999985221 2222222221 122356799999998888888
Q ss_pred CHHHHHHHHHHh----cCCCCCHHHHHHHHHHH------HHHcCCccccCCcCC-------ccc----cCCCCCC----C
Q 006897 162 TVKETLMFSANF----RLKGMSHKEKEDRVESL------MDELGLTHVAGSFVG-------DEE----NRGISGL----D 216 (627)
Q Consensus 162 TV~e~l~~~~~~----~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~~g-------Ge~----qrPtsgL----D 216 (627)
|+.|++...... ...+.++++.++++++. ++.+|+.+..++..+ .+. ..|++|+ |
T Consensus 80 ~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d 159 (207)
T 1znw_A 80 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETA 159 (207)
T ss_dssp HHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCH
T ss_pred HhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCH
Confidence 888776421100 11123445556666665 666666554443321 111 2277886 7
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
+..+.++.+.+++++++.|.|+|++|||++ ++.++|||+++|.+
T Consensus 160 ~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 160 DVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 889999999999998767899999999998 58999999999853
No 66
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.81 E-value=1.5e-23 Score=228.11 Aligned_cols=185 Identities=12% Similarity=0.088 Sum_probs=139.9
Q ss_pred ceEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEEC
Q 006897 55 CKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134 (627)
Q Consensus 55 ~~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~ 134 (627)
..++++|+++.|.. +.++|+++ |++.+||+++|+||||||||||+++|+|+.+++ .|.|.++
T Consensus 130 ~~l~~~~v~~~~~t--------------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~ 191 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--------------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLI 191 (438)
T ss_dssp CTTTSCCCCSBCCC--------------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEE
T ss_pred CceEEeccceecCC--------------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEe
Confidence 35789999988831 34699999 999999999999999999999999999999885 3999999
Q ss_pred Cc---cCCC-------hhhhcccEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCc
Q 006897 135 CH---QIKK-------PAQLRKICGFVAQE-DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF 203 (627)
Q Consensus 135 g~---~~~~-------~~~~r~~ig~v~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 203 (627)
|+ ++.+ ...+++.++|++|+ ..+++.+|+.+|+.+.+...... .+++..++ +...++
T Consensus 192 G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~------~~~v~~~l------d~l~~l 259 (438)
T 2dpy_A 192 GERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR------GQHVLLIM------DSLTRY 259 (438)
T ss_dssp SCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT------TCEEEEEE------ECHHHH
T ss_pred ceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC------CCCHHHHH------HhHHHH
Confidence 98 4321 12467789999995 56677889999998875431100 00000000 111223
Q ss_pred CCccccC-------C--CCCCCHHHHHHHHHHHHHHHH---cCCC-----EEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 204 VGDEENR-------G--ISGLDSTSALQVIELLASMAK---AKQR-----TVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 204 ~gGe~qr-------P--tsgLD~~~~~~i~~~L~~l~~---~~g~-----Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
++|+ || | ++|||+....++.++++++.+ +.|. ||++++||++ ..+||++++|.+|+++.
T Consensus 260 S~g~-qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 260 AMAQ-REIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH-HHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEE
T ss_pred HHHH-HHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEE
Confidence 3555 33 3 899999999999999999865 2364 9999999997 47899999999999999
Q ss_pred eCCHHHH
Q 006897 267 YGSLELL 273 (627)
Q Consensus 267 ~G~~~~~ 273 (627)
.|+++++
T Consensus 336 ~~~~~~~ 342 (438)
T 2dpy_A 336 SRRLAEA 342 (438)
T ss_dssp CHHHHHT
T ss_pred eCCHHHc
Confidence 9887654
No 67
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.78 E-value=1.6e-19 Score=195.55 Aligned_cols=177 Identities=17% Similarity=0.203 Sum_probs=126.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------CCccc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ-----------------------------------DFDPR 129 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~-----------------------------------~~~~G 129 (627)
.+++++|+++++| +++|+|||||||||||++|.++..+. ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3699999999999 99999999999999999998776421 01248
Q ss_pred eEEECCccCCC--hhhhcc-cEEEEccCCCCCCCCCHHHHHHHHHHhc-----------------------CCC-C----
Q 006897 130 SITVNCHQIKK--PAQLRK-ICGFVAQEDNLLPLLTVKETLMFSANFR-----------------------LKG-M---- 178 (627)
Q Consensus 130 ~i~i~g~~~~~--~~~~r~-~ig~v~Q~~~l~~~lTV~e~l~~~~~~~-----------------------~~~-~---- 178 (627)
.+.+||+++.. ..++.+ .+++++|++.++.. +..+...|.-... ... .
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999998642 233443 48999999876543 5554444321100 000 0
Q ss_pred ------------------------------CHHHHHHHHHHHHHHcCCccc-----------------------c--C--
Q 006897 179 ------------------------------SHKEKEDRVESLMDELGLTHV-----------------------A--G-- 201 (627)
Q Consensus 179 ------------------------------~~~~~~~~v~~~l~~lgL~~~-----------------------~--~-- 201 (627)
..+...+.+.+.++.+++.+. . +
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112345556666665420 0 1
Q ss_pred -------C-cCCccccC--------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHh
Q 006897 202 -------S-FVGDEENR--------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYI 253 (627)
Q Consensus 202 -------~-~~gGe~qr--------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~ 253 (627)
. ++|||+|| ||+|||+.++..+.+.|++++ .|.|||+|||+++ +...|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~--~~~~~ 362 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQ--IAARA 362 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHH--HHTTC
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHH--HHhhc
Confidence 0 57999987 899999999999999999996 3899999999985 56789
Q ss_pred hhheee----cCCeEEee
Q 006897 254 SKFLIL----SRGSVVHY 267 (627)
Q Consensus 254 D~i~vL----~~G~iv~~ 267 (627)
|++++| ++|+++..
T Consensus 363 d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp SEEEEEEEEEETTEEEEE
T ss_pred CeEEEEEEeccCCceEEE
Confidence 999999 99998765
No 68
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.76 E-value=1.2e-22 Score=209.87 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=116.6
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.|+++||++.|. ..+|+|+|++|++||+++|+||||||||||+++|+|++ + |+|.
T Consensus 101 ~i~~~~vs~~y~----------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~---G~I~--- 155 (305)
T 2v9p_A 101 FFNYQNIELITF----------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---G---GSVL--- 155 (305)
T ss_dssp HHHHTTCCHHHH----------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---T---CEEE---
T ss_pred eEEEEEEEEEcC----------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---C---ceEE---
Confidence 588999999882 35899999999999999999999999999999999998 2 8873
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHc---CCccccCCcCCccccC-
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKE-TLMFSANFRLKGMSHKEKEDRVESLMDEL---GLTHVAGSFVGDEENR- 210 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e-~l~~~~~~~~~~~~~~~~~~~v~~~l~~l---gL~~~~~~~~gGe~qr- 210 (627)
+|++|++.+++. |++| |+.+.. ..+. .+.+.++.+ |++ ...++||||||
T Consensus 156 -------------~~v~q~~~lf~~-ti~~~ni~~~~-----~~~~-----~~~~~i~~~L~~gld--g~~LSgGqkQRA 209 (305)
T 2v9p_A 156 -------------SFANHKSHFWLA-SLADTRAALVD-----DATH-----ACWRYFDTYLRNALD--GYPVSIDRKHKA 209 (305)
T ss_dssp -------------CGGGTTSGGGGG-GGTTCSCEEEE-----EECH-----HHHHHHHHTTTGGGG--TCCEECCCSSCC
T ss_pred -------------EEecCccccccc-cHHHHhhccCc-----cccH-----HHHHHHHHHhHccCC--ccCcCHHHHHHH
Confidence 456777777764 7776 776531 1111 344455542 333 45788999998
Q ss_pred ------C----CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHHHHHHHh
Q 006897 211 ------G----ISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINN 279 (627)
Q Consensus 211 ------P----tsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~~~ 279 (627)
| |++||+.++..+.. .+|+++ ..+.||+| +|++|++++.|+++++...+.+
T Consensus 210 RAll~~p~iLlTs~LD~~~~~~i~~---------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 210 AVQIKAPPLLVTSNIDVQAEDRYLY---------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp CCEECCCCEEEEESSCSTTCGGGGG---------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred HHHhCCCCEEEECCCCHHHHHHHHH---------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 2 79999999888752 189987 35789999 9999999999999988544443
No 69
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.73 E-value=1.4e-19 Score=191.06 Aligned_cols=180 Identities=13% Similarity=0.142 Sum_probs=125.4
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.++++|+++.|.. +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+ .|.+.+.|
T Consensus 45 ~i~~~~l~~~~~t--------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G 106 (347)
T 2obl_A 45 PLLRQVIDQPFIL--------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIG 106 (347)
T ss_dssp STTCCCCCSEECC--------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEES
T ss_pred CeeecccceecCC--------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEec
Confidence 5789999999941 34699999 999999999999999999999999999999885 39999888
Q ss_pred ccCCC---------hhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc-----cccC
Q 006897 136 HQIKK---------PAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT-----HVAG 201 (627)
Q Consensus 136 ~~~~~---------~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----~~~~ 201 (627)
++..+ ...+++.+.+++|.+. +..+.+.-.... ..+.+.+...+-+ +...
T Consensus 107 ~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~-----------~~~ae~~~~~~~~vl~~ld~~~ 170 (347)
T 2obl_A 107 ERGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA-----------TTIAEYFRDQGKNVLLMMDSVT 170 (347)
T ss_dssp CCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH-----------HHHHHHHHTTTCEEEEEEETHH
T ss_pred ccHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH-----------HHHHHHHHhccccHHHHHhhHH
Confidence 65211 1124556888887542 222322211000 0000111100100 1111
Q ss_pred CcCCccccC--------C-CCCCCHHHHHHHHHHHHHHHH-cCCC-----EEEEEccCccHHHHHHhhhheeecCCeEEe
Q 006897 202 SFVGDEENR--------G-ISGLDSTSALQVIELLASMAK-AKQR-----TVVLSIHQPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 202 ~~~gGe~qr--------P-tsgLD~~~~~~i~~~L~~l~~-~~g~-----Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
++++|+ || | ++|||+....++.++++++.+ +.|. ||+++|||++ ..+||++++|.+|+++.
T Consensus 171 ~lS~g~-r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 171 RYARAA-RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp HHHHHH-HHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEB
T ss_pred HHHHHH-HHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEE
Confidence 223444 32 3 699999999999999999864 4577 9999999998 47899999999999999
Q ss_pred eCCHHHH
Q 006897 267 YGSLELL 273 (627)
Q Consensus 267 ~G~~~~~ 273 (627)
+++.++.
T Consensus 247 ~~~l~~~ 253 (347)
T 2obl_A 247 TRELAEE 253 (347)
T ss_dssp CHHHHTT
T ss_pred eCCHHHc
Confidence 8877654
No 70
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.71 E-value=1e-19 Score=178.64 Aligned_cols=126 Identities=17% Similarity=0.257 Sum_probs=85.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC-ChhhhcccEEEEccCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK-KPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~-~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
.+.+|+|| ++||+++|+||||||||||+|+|+|+ +|++ |+|.. .++. .....++.+|||||++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~---G~I~~--~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS---KQVSR--IILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHT---TSCSE--EEEEECSCCTTCCCCSSCC--------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcC---Ceeee--EEecCCchhhhcceEEecCCH------
Confidence 45699996 89999999999999999999999999 8864 77732 1111 1124567899999986
Q ss_pred CHHHHH-HHHHHh--cCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC------------------CCCCCCHHHH
Q 006897 162 TVKETL-MFSANF--RLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR------------------GISGLDSTSA 220 (627)
Q Consensus 162 TV~e~l-~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr------------------PtsgLD~~~~ 220 (627)
+||+ .+.... ..... ...++++++++. |+ ||+|| ||+| ++
T Consensus 76 --~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-gl---------Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 76 --NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-GI---------VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp ------CTTTHHHHHHHTTT---SCTTHHHHHHHT-TS---------EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred --HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-CC---------chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 3444 221100 00010 112456777776 65 88888 9999 88
Q ss_pred HHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 221 LQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 221 ~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
..+.+.|+++ + .|+||| +|||++
T Consensus 137 ~~l~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 137 AQMKMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp HHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred HHHHHHHHHh-c-CCCEEE-EECCHH
Confidence 9999999988 4 489999 999987
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.71 E-value=1.3e-19 Score=194.98 Aligned_cols=158 Identities=12% Similarity=0.140 Sum_probs=121.8
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhh
Q 006897 84 LHILKSVSFEARDSE--------------------ILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQ 143 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge--------------------~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~ 143 (627)
+.+|+|||+++++|| ++||+||||||||||+|+|+|+++|+. |+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~---GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE---GAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST---TSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC---ceEEECCeecc----
Confidence 468999999999999 999999999999999999999999864 99998886631
Q ss_pred hcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC--CcCCc--cccC---------
Q 006897 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG--SFVGD--EENR--------- 210 (627)
Q Consensus 144 ~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~~gG--e~qr--------- 210 (627)
+ .++++|++ .++.+|+.|++.++. . +.+++++++.+++.+... .++|| ++||
T Consensus 109 -~--~~~v~q~~-~~~~ltv~D~~g~~~-------~----~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 109 -M--ERHPYKHP-NIPNVVFWDLPGIGS-------T----NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp -C--CCEEEECS-SCTTEEEEECCCGGG-------S----SCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHH
T ss_pred -e--eEEecccc-ccCCeeehHhhcccc-------h----HHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHh
Confidence 2 27899985 567889999876531 1 134778889998865321 14466 7766
Q ss_pred -------------------CCCCCCHHHHHHHHHHHHHHHH----cC----CCEEEEEccCccH-HHHHHhhhhe-eecC
Q 006897 211 -------------------GISGLDSTSALQVIELLASMAK----AK----QRTVVLSIHQPSY-RILQYISKFL-ILSR 261 (627)
Q Consensus 211 -------------------PtsgLD~~~~~~i~~~L~~l~~----~~----g~Tii~~tH~~~~-~i~~~~D~i~-vL~~ 261 (627)
||+|||+..+.++++.|+++.+ +. ..+|++++|+++. .+.++||++. .|.+
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 9999999999999999999852 22 3678899998872 2788999986 5555
Q ss_pred Ce
Q 006897 262 GS 263 (627)
Q Consensus 262 G~ 263 (627)
|+
T Consensus 254 g~ 255 (413)
T 1tq4_A 254 YK 255 (413)
T ss_dssp GG
T ss_pred ch
Confidence 54
No 72
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.69 E-value=2.5e-20 Score=208.21 Aligned_cols=162 Identities=13% Similarity=0.075 Sum_probs=112.5
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCCccceEEECCccCCC-hhhhcccEEEEccCCCCC
Q 006897 83 PLHILKSVSF-EARDSEILAVVGPSGTGKSSLLRI--ISGRVRDQDFDPRSITVNCHQIKK-PAQLRKICGFVAQEDNLL 158 (627)
Q Consensus 83 ~~~iL~~vsl-~i~~Ge~~aIiGpnGsGKSTLl~~--L~Gl~~~~~~~~G~i~i~g~~~~~-~~~~r~~ig~v~Q~~~l~ 158 (627)
..++|+|||+ .+++||+++|+||||||||||+++ ++|+.+|++ |.|.++|++... ....++.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~---g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE---PGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 3568999999 999999999999999999999999 789998754 999999987211 123456789999985421
Q ss_pred CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc----cCCcCCccccC-----CC-----CCCCHHHHHHHH
Q 006897 159 PLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV----AGSFVGDEENR-----GI-----SGLDSTSALQVI 224 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~----~~~~~gGe~qr-----Pt-----sgLD~~~~~~i~ 224 (627)
+. +.+ ..... .+ +..++++.++|++. ...++||++|| |+ ++||+..+..+.
T Consensus 101 ~~------l~~---~~~~~-~~-----~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~ 165 (525)
T 1tf7_A 101 GK------LFI---LDASP-DP-----EGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELF 165 (525)
T ss_dssp TS------EEE---EECCC-CS-----SCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHH
T ss_pred Cc------EEE---EecCc-cc-----chhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHH
Confidence 11 100 00000 00 00112222222222 22334778877 55 468999999999
Q ss_pred HHHHHHHHcCCCEEEEEccCccHH--------HHHHhhhheeecCCe
Q 006897 225 ELLASMAKAKQRTVVLSIHQPSYR--------ILQYISKFLILSRGS 263 (627)
Q Consensus 225 ~~L~~l~~~~g~Tii~~tH~~~~~--------i~~~~D~i~vL~~G~ 263 (627)
++++++++ .|+|||+++|+++.. +..+||++++|++|+
T Consensus 166 ~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 166 RLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp HHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 99999976 599999999999841 245699999999843
No 73
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.64 E-value=5.1e-19 Score=175.03 Aligned_cols=164 Identities=9% Similarity=0.095 Sum_probs=99.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh---hhhcccEEEEccCCCCCCCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP---AQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~---~~~r~~ig~v~Q~~~l~~~l 161 (627)
.-|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++... ...++.++|++|++.+|+.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 3699999999999999999999999999999999987 4 77888 7654221 22456799999987766543
Q ss_pred C-HHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC-----------------------CCCCCC
Q 006897 162 T-VKETLMFSA-NFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR-----------------------GISGLD 216 (627)
Q Consensus 162 T-V~e~l~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr-----------------------PtsgLD 216 (627)
+ +.+++.+.. .....+.+ .+.++++++...+.-....+.|||+|| |++++|
T Consensus 84 ~~~~~~l~~~~~~~~~~g~~----~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFYGTL----KSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp HHTTCEEEEEEETTEEEEEE----HHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred hhccchhhhhhcccccCCCc----HHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 2 111211100 00001111 234666666544321112344777655 456788
Q ss_pred HHHHHHHHHHHHHHHHc------CCCEEEEEccCccHHHHHHhhhheeec
Q 006897 217 STSALQVIELLASMAKA------KQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~------~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
..+...+.+.|.+..++ .+.+.|+++|+++ ++.+.+|+++.-.
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii~~~ 208 (218)
T 1z6g_A 160 TENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYLLNS 208 (218)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHHHHH
Confidence 88888888888776543 4577888999987 5788888887543
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.63 E-value=8.7e-18 Score=174.16 Aligned_cols=156 Identities=15% Similarity=0.206 Sum_probs=105.5
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh------hhh--cccEEEEccCCC-C
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP------AQL--RKICGFVAQEDN-L 157 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~------~~~--r~~ig~v~Q~~~-l 157 (627)
++++|+++++|++++|+||||||||||++.|+|+++|.+ |+|.++|.+.... ..+ +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 467899999999999999999999999999999998854 9999999886432 122 346999999988 8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCC---------------cCCccc------cCCCCCCC
Q 006897 158 LPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGS---------------FVGDEE------NRGISGLD 216 (627)
Q Consensus 158 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~~gGe~------qrPtsgLD 216 (627)
+|.+|++||+.++.... . . ..+++.+|+.+..++ +....+ . ||+|||
T Consensus 167 ~~~~~v~e~l~~~~~~~-~--d--------~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD 234 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG-Y--D--------VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLN 234 (302)
T ss_dssp CHHHHHHHHHHHHHHTT-C--S--------EEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGG
T ss_pred CHHHHHHHHHHHHHHcC-C--c--------chHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcC
Confidence 88899999999864211 0 0 011222222221111 111111 2 899999
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEccC---------ccHHHHHHhhhheeecCCeE
Q 006897 217 STSALQVIELLASMAKAKQRTVVLSIHQ---------PSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 217 ~~~~~~i~~~L~~l~~~~g~Tii~~tH~---------~~~~i~~~~D~i~vL~~G~i 264 (627)
+..+ ++++.++.|.|+|++||. ++ .+.+..+.|.++..|+.
T Consensus 235 ~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~-~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 235 MLPQ------AREFNEVVGITGLILTKLDGSARGGCVVS-VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHH-HHHHHCCCEEEEECSSS
T ss_pred HHHH------HHHHHHhcCCCEEEEeCCCCCCccChhee-hHHHHCCCEEEEeCCCC
Confidence 8754 345555568999999993 22 13344556788888865
No 75
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.63 E-value=3.4e-16 Score=166.66 Aligned_cols=65 Identities=22% Similarity=0.379 Sum_probs=57.0
Q ss_pred ccCCcCCccccC------------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhh
Q 006897 199 VAGSFVGDEENR------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYIS 254 (627)
Q Consensus 199 ~~~~~~gGe~qr------------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D 254 (627)
...+++|||+|| ||+|||+.++..+++.|+++++ .|+|||+||||++ ..+.||
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCC
Confidence 445677999987 9999999999999999999975 5999999999997 367899
Q ss_pred hheeecCCeEEe
Q 006897 255 KFLILSRGSVVH 266 (627)
Q Consensus 255 ~i~vL~~G~iv~ 266 (627)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 76
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=5.2e-16 Score=155.97 Aligned_cols=164 Identities=14% Similarity=0.130 Sum_probs=92.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCC
Q 006897 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 82 ~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~--------~~~~~i~~v~~d~-~~~~l 73 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE--------QRQRKVVILSQDR-FYKVL 73 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC--------GGGCSEEEEEGGG-GBCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc--------ccCCceEEEeCCc-Ccccc
Confidence 4567999999999999999999999999999999999975 322222 2467799999995 67789
Q ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc--CCccccCCcCCccccCC-------------CCCCCHHHHHHHHHH
Q 006897 162 TVKETLMFSANFRLKGMSHKEKEDRVESLMDEL--GLTHVAGSFVGDEENRG-------------ISGLDSTSALQVIEL 226 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~~gGe~qrP-------------tsgLD~~~~~~i~~~ 226 (627)
|+.|++.+.........+.....+++.+.|+.+ +.......+++|++||- ..|+|+.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l--- 150 (245)
T 2jeo_A 74 TAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEI--- 150 (245)
T ss_dssp CHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHH---
T ss_pred CHhHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHH---
Confidence 999999875322111111111234455555543 22233445668887761 135565433332
Q ss_pred HHHHHHcCCCEEEEEccCccHHHHH-HhhhheeecCCeEEeeCCHHHHHHHH
Q 006897 227 LASMAKAKQRTVVLSIHQPSYRILQ-YISKFLILSRGSVVHYGSLELLEETI 277 (627)
Q Consensus 227 L~~l~~~~g~Tii~~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~~~~~~~ 277 (627)
.++ .+.+|++++|+.. .+.+ +++++ ++|+ +.+++.+.+
T Consensus 151 -~~~---~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 151 -RDM---FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp -HTT---CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHH
T ss_pred -HHh---cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 222 3789999999743 3444 34444 6675 566665443
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.62 E-value=3e-17 Score=167.50 Aligned_cols=133 Identities=20% Similarity=0.194 Sum_probs=80.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM 178 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 178 (627)
.++|+||||||||||+|+|+|+.+|+. |+|.++|+++. ....++.++|++|++.+++.+||.||+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~---G~i~~~g~~i~-~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK---ASSWNREEKIP-KTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CC-CCCSCCEEEESCC----CCEEEEECCCC--CCSBC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC---CccccCCcccC-cceeeeeeEEEeecCCCcCCceEEechhhhhhccc---
Confidence 479999999999999999999998864 99999998853 23446789999999999999999999998743221
Q ss_pred CHHHHHHHHHHHHHHcCCccccCCcCCccccC---------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcc
Q 006897 179 SHKEKEDRVESLMDELGLTHVAGSFVGDEENR---------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIH 243 (627)
Q Consensus 179 ~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr---------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH 243 (627)
.+..+.+.+.++.--.+.....++|||+|| |+.|||+.. .+.++++.+ . .++|++.|
T Consensus 77 --~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~ 148 (270)
T 3sop_A 77 --ENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIA 148 (270)
T ss_dssp --TTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEET
T ss_pred --HHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEe
Confidence 111122333332111122345677999998 679999976 455666654 3 79999998
Q ss_pred Ccc
Q 006897 244 QPS 246 (627)
Q Consensus 244 ~~~ 246 (627)
..+
T Consensus 149 K~D 151 (270)
T 3sop_A 149 KAD 151 (270)
T ss_dssp TGG
T ss_pred ccc
Confidence 754
No 78
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.60 E-value=1.3e-16 Score=151.66 Aligned_cols=122 Identities=15% Similarity=0.183 Sum_probs=80.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCC-CCCCCHHHHH
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNL-LPLLTVKETL 167 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l-~~~lTV~e~l 167 (627)
||||++++||+++|+||||||||||+|++.+ |...+++ ..++ |+++|++.- ...-++.+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~------d~~~---g~~~~~~~~~~~~~~~~~~~ 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISS------DFCR---GLMSDDENDQTVTGAAFDVL 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEH------HHHH---HHHCSSTTCGGGHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEcc------HHHH---HHhcCcccchhhHHHHHHHH
Confidence 6899999999999999999999999999652 2211211 1222 667776421 1011222222
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC---CcCCccccC------------------CCCCCCHH--------
Q 006897 168 MFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG---SFVGDEENR------------------GISGLDST-------- 218 (627)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~---~~~gGe~qr------------------PtsgLD~~-------- 218 (627)
.. ... .....|.....+ ..+||++|| ||++||+.
T Consensus 63 ~~----------------~~~-~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~ 125 (171)
T 4gp7_A 63 HY----------------IVS-KRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQ 125 (171)
T ss_dssp HH----------------HHH-HHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCC
T ss_pred HH----------------HHH-HHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCC
Confidence 11 111 112334443332 234778877 99999999
Q ss_pred --------HHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 219 --------SALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 219 --------~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
.+.++.+.|++++++ |.|+|++|||++
T Consensus 126 ~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~ 160 (171)
T 4gp7_A 126 VEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPE 160 (171)
T ss_dssp CCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHH
T ss_pred CCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHH
Confidence 568999999999776 999999999987
No 79
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.58 E-value=3.5e-16 Score=163.83 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhh--eeecCCeE-EeeCCHHH
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKF--LILSRGSV-VHYGSLEL 272 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i--~vL~~G~i-v~~G~~~~ 272 (627)
||++||+..+..+.+.|++++ .|.|+|++||+++ +.+.||++ ++|.+|+. +...+.++
T Consensus 250 p~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 250 VDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 999999999999999999984 3789999999975 57889987 78888754 44444444
No 80
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.58 E-value=1.3e-16 Score=159.81 Aligned_cols=162 Identities=10% Similarity=0.083 Sum_probs=94.9
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCCccceEEECCccCCC-hhhhcccEEEEccCCCCCCCCC
Q 006897 87 LKSVS-FEARDSEILAVVGPSGTGKSSLLRIIS--GRVRDQDFDPRSITVNCHQIKK-PAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 87 L~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~--Gl~~~~~~~~G~i~i~g~~~~~-~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
|+++- ..+++||+++|+||||||||||+++|+ |+.++.. |.+.+++..... .....+.+|+++|+....+.++
T Consensus 19 lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE---PGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC---eEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 44442 379999999999999999999999999 6634432 667777654211 1223456788888754444555
Q ss_pred HHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCC-----HHHHHHHHHHHHHH
Q 006897 163 VKETLMFSANFR-------LKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLD-----STSALQVIELLASM 230 (627)
Q Consensus 163 V~e~l~~~~~~~-------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD-----~~~~~~i~~~L~~l 230 (627)
+.++........ .......+..+++.+.++..+-+- ++- ..|+++|| +..+..+.++++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~----lil---Dep~~~ld~~~d~~~~~~~l~~l~~~l 168 (251)
T 2ehv_A 96 IVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKR----LVI---DSIPSIALRLEEERKIREVLLKLNTIL 168 (251)
T ss_dssp EEC-------------------CCHHHHHHHHHHHHHHTTCSE----EEE---ECHHHHHHHSSSGGGHHHHHHHHHHHH
T ss_pred EEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCE----EEE---ccHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 555443321100 000111222222333332211110 000 11778876 66666799999988
Q ss_pred HHcCCCEEEEEccCccHHH---------HHHh-hhheeec
Q 006897 231 AKAKQRTVVLSIHQPSYRI---------LQYI-SKFLILS 260 (627)
Q Consensus 231 ~~~~g~Tii~~tH~~~~~i---------~~~~-D~i~vL~ 260 (627)
++ .|+|||++||+++. + ..+| |++++|+
T Consensus 169 ~~-~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 169 LE-MGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HH-HCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HH-CCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEe
Confidence 65 59999999999884 5 5788 9999995
No 81
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.57 E-value=8.2e-17 Score=170.15 Aligned_cols=155 Identities=15% Similarity=0.225 Sum_probs=106.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh------hhh--cccEEEEccCCC-CC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP------AQL--RKICGFVAQEDN-LL 158 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~------~~~--r~~ig~v~Q~~~-l~ 158 (627)
+++|+++++|++++|+||||||||||++.|+|+++|.+ |+|.++|.++... ..+ +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC---CEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 56899999999999999999999999999999998753 9999999886432 122 357999999988 88
Q ss_pred CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC---------------Cccc------cCCCCCCCH
Q 006897 159 PLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV---------------GDEE------NRGISGLDS 217 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~---------------gGe~------qrPtsgLD~ 217 (627)
|.+|++||+.++..... . ..+++.+|+.+..++++ .... . ||+|||+
T Consensus 225 p~~tv~e~l~~~~~~~~---d--------~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~ 292 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGY---D--------VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNM 292 (359)
T ss_dssp HHHHHHHHHHHHHHTTC---S--------EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGG
T ss_pred hhhhHHHHHHHHHhCCC---H--------HHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCH
Confidence 88999999998642110 0 01122222222111110 1111 2 8999998
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEccC---------ccHHHHHHhhhheeecCCeE
Q 006897 218 TSALQVIELLASMAKAKQRTVVLSIHQ---------PSYRILQYISKFLILSRGSV 264 (627)
Q Consensus 218 ~~~~~i~~~L~~l~~~~g~Tii~~tH~---------~~~~i~~~~D~i~vL~~G~i 264 (627)
..+. +++.++.|.|+|++||. ++ .+....+.|.++..|+.
T Consensus 293 ~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~ls-i~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 293 LPQA------REFNEVVGITGLILTKLDGSARGGCVVS-VVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHH-HHHHHCCCEEEEECSSS
T ss_pred HHHH------HHHHHhcCCeEEEEecCcccccccHHHH-HHHHhCCCEEEEeCCCC
Confidence 7653 45555568999999993 33 13345567777777764
No 82
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.56 E-value=1.2e-16 Score=158.03 Aligned_cols=164 Identities=15% Similarity=0.136 Sum_probs=99.9
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CccceEEECCccCCChhhhcccEEEEccCCCCCCC
Q 006897 86 ILKSVS-FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPL 160 (627)
Q Consensus 86 iL~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~----~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~ 160 (627)
.||.+- .-+++||+++|+||||||||||+++|+|...+.. ...+.+.+++.+... ++.+++++|+..+++.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~----~~~i~~~~~~~~~~~~ 88 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR----PERIREIAQNRGLDPD 88 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC----HHHHHHHHHHTTSCHH
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC----HHHHHHHHHHcCCCHH
Confidence 344433 5799999999999999999999999999654421 123578888765211 2346677887777765
Q ss_pred CCHHHHHHHHHHhcCCCCCHHHHH---HHHHHHHHHcC--CccccCCcCCccccCCCCCCCHH-------H-----HHHH
Q 006897 161 LTVKETLMFSANFRLKGMSHKEKE---DRVESLMDELG--LTHVAGSFVGDEENRGISGLDST-------S-----ALQV 223 (627)
Q Consensus 161 lTV~e~l~~~~~~~~~~~~~~~~~---~~v~~~l~~lg--L~~~~~~~~gGe~qrPtsgLD~~-------~-----~~~i 223 (627)
|+.||+.+.. .....+.. +++.+.++..- ..+ .+.++- ..|++++|+. . ..++
T Consensus 89 -~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~llil---De~~~~l~~~~~~~~~~~~r~~~~~~~ 158 (231)
T 4a74_A 89 -EVLKHIYVAR-----AFNSNHQMLLVQQAEDKIKELLNTDRP-VKLLIV---DSLTSHFRSEYIGRGALAERQQKLAKH 158 (231)
T ss_dssp -HHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHHTTSSSC-EEEEEE---ETSSHHHHHHSCSTTHHHHHHHHHHHH
T ss_pred -HHhhcEEEEe-----cCChHHHHHHHHHHHHHHHHhcccCCc-eeEEEE---CChHHHhccccCCCcchhHHHHHHHHH
Confidence 8888876531 11222222 22333333110 100 000000 1266776662 1 3478
Q ss_pred HHHHHHHHHcCCCEEEEEccCccH---HHHHHhhhheeecCCe
Q 006897 224 IELLASMAKAKQRTVVLSIHQPSY---RILQYISKFLILSRGS 263 (627)
Q Consensus 224 ~~~L~~l~~~~g~Tii~~tH~~~~---~i~~~~D~i~vL~~G~ 263 (627)
++.|++++++.|+|||+++|+.+. .+...||++++|++|+
T Consensus 159 ~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 159 LADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 888888887779999999995441 2678899999998753
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.55 E-value=6.8e-16 Score=162.03 Aligned_cols=133 Identities=11% Similarity=0.127 Sum_probs=97.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKE 165 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e 165 (627)
+++++|+.+++|++++|+||||||||||+++|+|+++|++ |.|.++|.+.......++.+++++| ...+.++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~---g~i~i~~~~e~~~~~~~~~i~~~~g-----gg~~~r~ 231 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE---RIISIEDTEEIVFKHHKNYTQLFFG-----GNITSAD 231 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTS---CEEEEESSCCCCCSSCSSEEEEECB-----TTBCHHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---cEEEECCeeccccccchhEEEEEeC-----CChhHHH
Confidence 7999999999999999999999999999999999998864 9999999753222335677888875 3445555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCc
Q 006897 166 TLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245 (627)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~ 245 (627)
+|..+.. ...+.++-|| |++ .++.+.|+.+.. .+.|+|+++|++
T Consensus 232 ~la~aL~-------------------------~~p~ilildE---~~~-------~e~~~~l~~~~~-g~~tvi~t~H~~ 275 (330)
T 2pt7_A 232 CLKSCLR-------------------------MRPDRIILGE---LRS-------SEAYDFYNVLCS-GHKGTLTTLHAG 275 (330)
T ss_dssp HHHHHTT-------------------------SCCSEEEECC---CCS-------THHHHHHHHHHT-TCCCEEEEEECS
T ss_pred HHHHHhh-------------------------hCCCEEEEcC---CCh-------HHHHHHHHHHhc-CCCEEEEEEccc
Confidence 5543321 0112222233 454 235677777753 345899999999
Q ss_pred cHHHHHHhhhheeecCCeE
Q 006897 246 SYRILQYISKFLILSRGSV 264 (627)
Q Consensus 246 ~~~i~~~~D~i~vL~~G~i 264 (627)
+ +.+.|||+++|.+|+.
T Consensus 276 ~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 276 S--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp S--HHHHHHHHHHHHHTSG
T ss_pred H--HHHHhhhheehhcCCc
Confidence 7 5789999999998864
No 84
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.54 E-value=2.8e-16 Score=162.37 Aligned_cols=167 Identities=14% Similarity=0.095 Sum_probs=103.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc-eEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-SITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G-~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
..+|+++++.+++|++++|+||||||||||++.|+|...+.. | .|.+.+.+. ...++++++..+.|+..+ +
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~---G~~v~~~~~e~-~~~~~~~r~~~~~~~~~~----~ 93 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM---GKKVGLAMLEE-SVEETAEDLIGLHNRVRL----R 93 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS---CCCEEEEESSS-CHHHHHHHHHHHHTTCCG----G
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc---CCeEEEEeCcC-CHHHHHHHHHHHHcCCCh----h
Confidence 458999999999999999999999999999999999987753 5 675544332 233444444444444321 2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC--ccccCCcCCcc-ccC-----------------CCC---C---CC
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGL--THVAGSFVGDE-ENR-----------------GIS---G---LD 216 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL--~~~~~~~~gGe-~qr-----------------Pts---g---LD 216 (627)
+.+++..+. + +.++..+.++++++..++ .+.......++ +++ |++ + +|
T Consensus 94 ~~~~l~~~~-~-----~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d 167 (296)
T 1cr0_A 94 QSDSLKREI-I-----ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESD 167 (296)
T ss_dssp GCHHHHHHH-H-----HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC----------
T ss_pred hccccccCC-C-----CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCC
Confidence 334443321 1 122333444444433222 22111111122 111 666 4 56
Q ss_pred H-HHHHHHHHHHHHHHHcCCCEEEEEccCc--cH-------------------HHHHHhhhheeecCCeE
Q 006897 217 S-TSALQVIELLASMAKAKQRTVVLSIHQP--SY-------------------RILQYISKFLILSRGSV 264 (627)
Q Consensus 217 ~-~~~~~i~~~L~~l~~~~g~Tii~~tH~~--~~-------------------~i~~~~D~i~vL~~G~i 264 (627)
. ....++++.|++++++.|+|||+++|+. +. .+.+.||+|++|++|+.
T Consensus 168 ~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 168 ERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 6 6778899999999887799999999995 30 37789999999998874
No 85
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.52 E-value=7.3e-17 Score=167.97 Aligned_cols=138 Identities=13% Similarity=0.093 Sum_probs=99.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHh
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANF 173 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~ 173 (627)
+++|+++||+||||||||||+++|+|+++|.. |. +.+++|+|++.+++. |++||+.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~---G~---------------~~v~~v~qd~~~~~~-t~~e~~~~~~-- 145 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWD---HH---------------PRVDLVTTDGFLYPN-AELQRRNLMH-- 145 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTST---TC---------------CCEEEEEGGGGBCCH-HHHHHTTCTT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccC---CC---------------CeEEEEecCccCCcc-cHHHHHHHHH--
Confidence 89999999999999999999999999998742 32 458999999998888 9999986521
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCccc----cCCcCCccccC------------------CCCCCCHHHHHHHHHHHHHHH
Q 006897 174 RLKGMSHKEKEDRVESLMDELGLTHV----AGSFVGDEENR------------------GISGLDSTSALQVIELLASMA 231 (627)
Q Consensus 174 ~~~~~~~~~~~~~v~~~l~~lgL~~~----~~~~~gGe~qr------------------PtsgLD~~~~~~i~~~L~~l~ 231 (627)
..+.+.....+++.+.|+.++ ... ...++||++|| |+..+|+.. ..+.
T Consensus 146 -~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~ 215 (312)
T 3aez_A 146 -RKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVS 215 (312)
T ss_dssp -CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGG
T ss_pred -hcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHH
Confidence 112233344567788888887 332 23556999998 788887521 1222
Q ss_pred HcCCCEEEEEccCccHHHHHHhhhheeecCCe
Q 006897 232 KAKQRTVVLSIHQPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 232 ~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~ 263 (627)
+..+ ..|+++|+.+.....+.+|.+.+.+|+
T Consensus 216 ~~~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 216 DLFD-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp GGCS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HhcC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 3334 457777877655566788988887764
No 86
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.52 E-value=7.5e-17 Score=151.23 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=66.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
.+.+++++||++++||+++|+||||||||||+|+|+|++ |.. |+|.++|.++.+....+ . +++|+..++ .+|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~---G~V~~~g~~i~~~~~~~-~--~~~q~~~l~-~lt 90 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ---GNVKSPTYTLVEEYNIA-G--KMIYHFDLY-RLA 90 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC---SCCCCCTTTCEEEEEET-T--EEEEEEECT-TCS
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC---CeEEECCEeeeeeccCC-C--cceeccccc-cCC
Confidence 346899999999999999999999999999999999999 753 99999998853221222 2 799998888 899
Q ss_pred HHHHHHH
Q 006897 163 VKETLMF 169 (627)
Q Consensus 163 V~e~l~~ 169 (627)
|.||+.+
T Consensus 91 v~e~l~~ 97 (158)
T 1htw_A 91 DPEELEF 97 (158)
T ss_dssp CTTHHHH
T ss_pred cHHHHHH
Confidence 9999965
No 87
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.51 E-value=4.3e-16 Score=176.43 Aligned_cols=189 Identities=16% Similarity=0.197 Sum_probs=106.5
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeece----------EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSV----------SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD 125 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~v----------sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~ 125 (627)
.++++||++.|..+. +++|+.+ +++++. +||+|||||||||||++|+|+..|.
T Consensus 10 ~i~~~~l~~~~~~~~-------------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~- 72 (608)
T 3szr_A 10 SVAENNLCSQYEEKV-------------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR- 72 (608)
T ss_dssp ----------CHHHH-------------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----
T ss_pred hhhhhhhhHHHHHHH-------------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC-
Confidence 578999999995321 2234333 355554 9999999999999999999998773
Q ss_pred CccceEEECCccCC-----ChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHcCCc
Q 006897 126 FDPRSITVNCHQIK-----KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK---GMSHKEKEDRVESLMDELGLT 197 (627)
Q Consensus 126 ~~~G~i~i~g~~~~-----~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~ 197 (627)
+.|.|+++|.++. ....+++.+||++|+..+++.+||+||+.++...... +.+.+ .+.+.
T Consensus 73 -~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~-----------~i~l~ 140 (608)
T 3szr_A 73 -GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHE-----------LITLE 140 (608)
T ss_dssp -----CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSC-----------CEEEE
T ss_pred -CCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchH-----------HHHHH
Confidence 1399999998751 1245778899999999999999999999886432110 00000 00000
Q ss_pred c----ccCCcC---CccccCCCCCCCHHHHHHHHHHHHHHH-HcCCCEEEEEccCccH---HHHHHhhh--------hee
Q 006897 198 H----VAGSFV---GDEENRGISGLDSTSALQVIELLASMA-KAKQRTVVLSIHQPSY---RILQYISK--------FLI 258 (627)
Q Consensus 198 ~----~~~~~~---gGe~qrPtsgLD~~~~~~i~~~L~~l~-~~~g~Tii~~tH~~~~---~i~~~~D~--------i~v 258 (627)
- ..+-.. -|-.+.||+|||+..+.++.++++++. +..+.++++++|+.+. ++.+++++ |+|
T Consensus 141 i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 141 ISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp EEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred hcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 0 000000 123334599999999999999999964 3446788999999762 12333333 467
Q ss_pred ecCCeEEeeCCHHHH
Q 006897 259 LSRGSVVHYGSLELL 273 (627)
Q Consensus 259 L~~G~iv~~G~~~~~ 273 (627)
+.++.++..|+.+++
T Consensus 221 lTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 221 LTKPDLVDKGTEDKV 235 (608)
T ss_dssp EECGGGSSSSSTTCC
T ss_pred ecchhhcCcccHHHH
Confidence 777777776765443
No 88
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.49 E-value=6.1e-16 Score=152.95 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=101.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH----HH
Q 006897 90 VSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV----KE 165 (627)
Q Consensus 90 vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV----~e 165 (627)
-.-..++|++++|+||||||||||+|+|+|+.+|+. ..|.|.+.+++.. ...++.++|+||++..|+.+++ .|
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~-~~g~v~~ttr~~~--~~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYD-TQVSVSHTTRQPR--PGEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTT-EEECCCEECSCCC--TTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCc-eEEEEEecCCCCC--cccccCceEEECCHHHHHHHHhcCHHHH
Confidence 344679999999999999999999999999988631 3488888887632 2235678999999887877777 56
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCc
Q 006897 166 TLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245 (627)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~ 245 (627)
++.+.... .+.+ .+.++++++. | +--.--||+.++.++.+.+. .++||++++|++
T Consensus 86 ~~~~~~~~--yg~~----~~~v~~~l~~-G-------------~illLDLD~~~~~~i~~~l~-----~~~tI~i~th~~ 140 (219)
T 1s96_A 86 HAEVFGNY--YGTS----REAIEQVLAT-G-------------VDVFLDIDWQGAQQIRQKMP-----HARSIFILPPSK 140 (219)
T ss_dssp EEEETTEE--EEEE----HHHHHHHHTT-T-------------CEEEEECCHHHHHHHHHHCT-----TCEEEEEECSSH
T ss_pred HHHHHhcc--CCCC----HHHHHHHHhc-C-------------CeEEEEECHHHHHHHHHHcc-----CCEEEEEECCCH
Confidence 65543211 1112 2345555542 1 00111299999999998875 378999999998
Q ss_pred cHHHHHHhhhheeecCCeEEeeCCHHHHHHHHH
Q 006897 246 SYRILQYISKFLILSRGSVVHYGSLELLEETIN 278 (627)
Q Consensus 246 ~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~~~ 278 (627)
+ ++.+ |+ +++| .++++++...+.
T Consensus 141 ~-~l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 141 I-ELDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp H-HHHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred H-HHHH---HH--HHcC----CCCHHHHHHHHH
Confidence 7 3433 54 7778 678888876654
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.45 E-value=3.1e-14 Score=168.95 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=98.9
Q ss_pred ceEEEEe-----EEEEEccCcccccccccCCccccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 55 CKVTVRN-----LSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARD-------SEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 55 ~~l~~~n-----ls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~-------Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+|+++| |++.|. ++..+++|++|++++ |++++|+||||||||||||+| |++.
T Consensus 749 ~~l~i~~~rHP~l~~~~~--------------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF--------------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEEECCCC--------------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEEEEeccccEEEEEec--------------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 3699999 998883 124599999999987 999999999999999999999 8875
Q ss_pred CCCCccceEEECCccCCChhhhcccEE-EEccCCCCCCCCCHHHHHHHHHHhcC-----CCCC--HHHHHHHHHHHHHHc
Q 006897 123 DQDFDPRSITVNCHQIKKPAQLRKICG-FVAQEDNLLPLLTVKETLMFSANFRL-----KGMS--HKEKEDRVESLMDEL 194 (627)
Q Consensus 123 ~~~~~~G~i~i~g~~~~~~~~~r~~ig-~v~Q~~~l~~~lTV~e~l~~~~~~~~-----~~~~--~~~~~~~v~~~l~~l 194 (627)
+ ..++| ||||+.. .+||.|++.. ++.. .+.+ ..+.. ++..++...
T Consensus 814 ~---------------------~aqiG~~Vpq~~~---~l~v~d~I~~--rig~~d~~~~~~stf~~em~-~~a~al~la 866 (1022)
T 2o8b_B 814 V---------------------MAQMGCYVPAEVC---RLTPIDRVFT--RLGASDRIMSGESTFFVELS-ETASILMHA 866 (1022)
T ss_dssp H---------------------HHTTTCCEESSEE---EECCCSBEEE--ECC---------CHHHHHHH-HHHHHHHHC
T ss_pred H---------------------HhheeEEeccCcC---CCCHHHHHHH--HcCCHHHHhhchhhhHHHHH-HHHHHHHhC
Confidence 3 11234 7777642 2333333311 0000 0000 00111 122222211
Q ss_pred CCccccCCcCCccccCCCCCCCHHHH-HHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEE--eeCCHH
Q 006897 195 GLTHVAGSFVGDEENRGISGLDSTSA-LQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVV--HYGSLE 271 (627)
Q Consensus 195 gL~~~~~~~~gGe~qrPtsgLD~~~~-~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv--~~G~~~ 271 (627)
. ...-++-.| |++|+|+... ..++++|+.++++.|.++|++||+++. +..++|++.++ +|++. +.|+++
T Consensus 867 ~---~~sLlLLDE---p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 867 T---AHSLVLVDE---LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp C---TTCEEEEEC---TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEE-EEEEEEC------
T ss_pred C---CCcEEEEEC---CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceee-cCeEEEEEecCcc
Confidence 1 000011222 9999999885 557889999976558999999999984 67789999887 58887 456554
Q ss_pred H
Q 006897 272 L 272 (627)
Q Consensus 272 ~ 272 (627)
+
T Consensus 939 ~ 939 (1022)
T 2o8b_B 939 D 939 (1022)
T ss_dssp -
T ss_pred c
Confidence 3
No 90
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.44 E-value=8.7e-15 Score=151.69 Aligned_cols=143 Identities=16% Similarity=0.185 Sum_probs=71.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR-VRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl-~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
++.++++++|+| +|+||||||||||++.|+|. +.|.+ | +.++|.++..... .+.+++++|++.+...+
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~---g-i~~~g~~~~~t~~-~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER---V-ISGAAEKIERTVQ-IEASTVEIEERGVKLRL 78 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------CEEEEC---CCEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCC---C-cccCCcccCCcce-EeeEEEEecCCCcccCc
Confidence 456999999998 99999999999999999997 66643 7 8777776432222 35689999998887789
Q ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC--------------CCC-CCCHHHHHHHHHH
Q 006897 162 TVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR--------------GIS-GLDSTSALQVIEL 226 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr--------------Pts-gLD~~~~~~i~~~ 226 (627)
|+.|+..++.... ..+..+..++.+.+.. +......+||++|| |++ |||+... +.
T Consensus 79 tv~Dt~g~~~~~~----~~e~~~~l~~~l~~~~--~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~ 148 (301)
T 2qnr_A 79 TVVDTPGYGDAIN----CRDCFKTIISYIDEQF--ERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AF 148 (301)
T ss_dssp EEEEEC---------------CTTHHHHHHHHH--HHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HH
T ss_pred chhhhhhhhhhcC----cHHHHHHHHHHHHHHH--HHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HH
Confidence 9999988754221 0011011112111111 12233455888877 787 5999863 56
Q ss_pred HHHHHHcCCCEEEEEccCcc
Q 006897 227 LASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 227 L~~l~~~~g~Tii~~tH~~~ 246 (627)
++++.++.+.++|++.||+.
T Consensus 149 l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 149 MKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHhcCCEEEEEEeCCCC
Confidence 66665545789999999975
No 91
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.42 E-value=9.9e-15 Score=139.55 Aligned_cols=138 Identities=16% Similarity=0.179 Sum_probs=75.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh--hhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP--AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK 176 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~--~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~ 176 (627)
.++|+||||||||||+|+|+|++. +.++|.+..+. ...++.+||++|+.. +.+++ ++ .....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~~-~~~~~ 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-FS-SKFFT 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEETT------CCEEE-EE-ETTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecCc------HHHHH-HH-hhcCC
Confidence 589999999999999999999974 22333321111 134678999999752 22222 10 00000
Q ss_pred -----C-----CCHHHHHHHHHHHHHH-----cCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEE
Q 006897 177 -----G-----MSHKEKEDRVESLMDE-----LGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLS 241 (627)
Q Consensus 177 -----~-----~~~~~~~~~v~~~l~~-----lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~ 241 (627)
+ .+.-+ ++++. ++.. +-.+ .+-++-.|-- ||++||+..+..+.+.+++ .+.|+|++
T Consensus 66 ~~~~~~~~~~~lSgG~-~qr~~-la~aa~~~~l~~~--p~llilDEig-p~~~ld~~~~~~l~~~l~~----~~~~~i~~ 136 (178)
T 1ye8_A 66 SKKLVGSYGVNVQYFE-ELAIP-ILERAYREAKKDR--RKVIIIDEIG-KMELFSKKFRDLVRQIMHD----PNVNVVAT 136 (178)
T ss_dssp CSSEETTEEECHHHHH-HHHHH-HHHHHHHHHHHCT--TCEEEECCCS-TTGGGCHHHHHHHHHHHTC----TTSEEEEE
T ss_pred ccccccccccCcCHHH-HHHHH-HHhhccccccccC--CCEEEEeCCC-CcccCCHHHHHHHHHHHhc----CCCeEEEE
Confidence 0 00111 11211 1111 1111 0111111111 8999999999999888865 46778888
Q ss_pred cc---CccHHHHHHhhhheeecCCeEEe
Q 006897 242 IH---QPSYRILQYISKFLILSRGSVVH 266 (627)
Q Consensus 242 tH---~~~~~i~~~~D~i~vL~~G~iv~ 266 (627)
+| +.+ .+.++||| .+|++++
T Consensus 137 ~H~~h~~~-~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 137 IPIRDVHP-LVKEIRRL----PGAVLIE 159 (178)
T ss_dssp CCSSCCSH-HHHHHHTC----TTCEEEE
T ss_pred EccCCCch-HHHHHHhc----CCcEEEE
Confidence 85 666 47778887 5677765
No 92
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.41 E-value=2.3e-15 Score=156.05 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=94.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh---h---hh--cccEEEEccCCCCCCCCCHHHHH
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP---A---QL--RKICGFVAQEDNLLPLLTVKETL 167 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~---~---~~--r~~ig~v~Q~~~l~~~lTV~e~l 167 (627)
+|++++|+||||||||||+++|+|+++|++ |+|.++|.++... . .+ ++.++|++|+..++|.++++||+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~---g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG---KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 799999999999999999999999999864 9999999886321 1 12 35699999999888989999999
Q ss_pred HHHHHhcC-------CCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEE
Q 006897 168 MFSANFRL-------KGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVL 240 (627)
Q Consensus 168 ~~~~~~~~-------~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~ 240 (627)
.++..... .+.... ......+ ++.... ..+..+ -.+.+...-.||+.+..++++.++++.++.|.|+|+
T Consensus 178 ~~~~~~~~d~~llDt~G~~~~-~~~~~~e-Ls~~r~-~iaRal-~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~ii 253 (304)
T 1rj9_A 178 QAMKARGYDLLFVDTAGRLHT-KHNLMEE-LKKVKR-AIAKAD-PEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVI 253 (304)
T ss_dssp HHHHHHTCSEEEECCCCCCTT-CHHHHHH-HHHHHH-HHHHHC-TTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHhCCCCEEEecCCCCCCc-hHHHHHH-HHHHHH-HHHHhh-cCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 87642110 011000 0000110 000000 000000 001111234799998899999999987766899999
Q ss_pred EccCcc
Q 006897 241 SIHQPS 246 (627)
Q Consensus 241 ~tH~~~ 246 (627)
+||+..
T Consensus 254 vTh~d~ 259 (304)
T 1rj9_A 254 VTKLDG 259 (304)
T ss_dssp EECTTS
T ss_pred EECCcc
Confidence 999853
No 93
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.40 E-value=9.8e-14 Score=147.41 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=95.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEc-cCCCC--CCCCCH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVA-QEDNL--LPLLTV 163 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~-Q~~~l--~~~lTV 163 (627)
++++|+.+++|++++|+||||||||||+++|+|+++|+. |.|.++|..-......++.+++++ |++.+ ++..|+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~---g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ---RLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS---CEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc---eEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence 499999999999999999999999999999999999864 999999854222233567899999 87654 467899
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcc
Q 006897 164 KETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIH 243 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH 243 (627)
++||..+.+.+ + +..+-||.+ . .+..+.|+.+.. ...|++.++|
T Consensus 242 ~~~i~~~l~~~----p---------------------d~~l~~e~r---~-------~~~~~~l~~l~~-g~~~~l~t~H 285 (361)
T 2gza_A 242 ATLLRSCLRMK----P---------------------TRILLAELR---G-------GEAYDFINVAAS-GHGGSITSCH 285 (361)
T ss_dssp HHHHHHHTTSC----C---------------------SEEEESCCC---S-------THHHHHHHHHHT-TCCSCEEEEE
T ss_pred HHHHHHHHhcC----C---------------------CEEEEcCch---H-------HHHHHHHHHHhc-CCCeEEEEEC
Confidence 99998764211 1 011112211 1 245566666643 3457899999
Q ss_pred CccHHHHHHhhhheeecCCe
Q 006897 244 QPSYRILQYISKFLILSRGS 263 (627)
Q Consensus 244 ~~~~~i~~~~D~i~vL~~G~ 263 (627)
..+ ....+||+..+..|.
T Consensus 286 ~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 286 AGS--CELTFERLALMVLQN 303 (361)
T ss_dssp CSS--HHHHHHHHHHHHTTS
T ss_pred CCC--HHHHHHHHHHHHhcc
Confidence 976 578999999998874
No 94
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.39 E-value=1.6e-13 Score=161.06 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=97.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH--------HcCCCCCCCccceEEECCccCCChhhhcccEEEEccC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRII--------SGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQE 154 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L--------~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~ 154 (627)
.+.+++|++|++++|++++|+||||||||||||++ .|...|.. +. . ++.+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~---~~-~---------------~~~~--- 705 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE---SA-E---------------VSIV--- 705 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEE---EE-E---------------EECC---
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccc---cc-c---------------chHH---
Confidence 45689999999999999999999999999999999 55544421 11 0 1110
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHH-HHHHHHHHHc
Q 006897 155 DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQV-IELLASMAKA 233 (627)
Q Consensus 155 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i-~~~L~~l~~~ 233 (627)
+.++..+...+++.-+.. . -..+ ..++..++..+. + ..-++-.| |++|||+.....+ ..+++.++++
T Consensus 706 d~i~~~ig~~d~l~~~lS----t-f~~e-~~~~a~il~~a~--~-~sLlLLDE---p~~GlD~~~~~~i~~~il~~l~~~ 773 (934)
T 3thx_A 706 DCILARVGAGDSQLKGVS----T-FMAE-MLETASILRSAT--K-DSLIIIDE---LGRGTSTYDGFGLAWAISEYIATK 773 (934)
T ss_dssp SEEEEECC---------C----H-HHHH-HHHHHHHHHHCC--T-TCEEEEES---CSCSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCchhhHHHhHh----h-hHHH-HHHHHHHHHhcc--C-CcEEEEeC---CCCCCCHHHHHHHHHHHHHHHHhc
Confidence 111222233344332210 0 0111 222334444321 0 00111222 9999999999888 6777888765
Q ss_pred CCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 234 KQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 234 ~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
.|.|+|++||+.+ +.++||++..+++|++...++.+++
T Consensus 774 ~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 774 IGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp TCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcE
Confidence 6899999999975 5789999999999999887766543
No 95
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.39 E-value=3.2e-14 Score=139.09 Aligned_cols=125 Identities=11% Similarity=0.075 Sum_probs=90.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCC--CCCCHHHHHHHHH
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLL--PLLTVKETLMFSA 171 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~--~~lTV~e~l~~~~ 171 (627)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 578999999999999999999999998642 478999998776 5679998875531
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHcCCccccCCc----CCccc----cC------------------CCCC-------CCHH
Q 006897 172 NFRLKGMSHKEKEDRVESLMDELGLTHVAGSF----VGDEE----NR------------------GISG-------LDST 218 (627)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~----~gGe~----qr------------------Ptsg-------LD~~ 218 (627)
+.+.....+++.++++.+++.+..+.. .+|++ || |+++ ||+.
T Consensus 60 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~ 134 (211)
T 3asz_A 60 -----DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDAD 134 (211)
T ss_dssp -----TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECC
T ss_pred -----CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCC
Confidence 111222345677788888776544332 25543 32 5667 8988
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 219 SALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 219 ~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
....+.+.+++..++.|+|++.++|+..
T Consensus 135 ~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 135 ADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8999999998865556899999999753
No 96
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.36 E-value=1.9e-14 Score=138.21 Aligned_cols=162 Identities=11% Similarity=0.112 Sum_probs=97.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcC-
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRL- 175 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~- 175 (627)
|++++|+||||||||||+++|++ +. .|.+.++|.++.. ....++++|.....+.+++++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINH----MVVGGYRPPWESDELLALTWKNITDLTVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHT----TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhh----hhccccccCccchhHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999997 22 2889998866321 1235677776655556689999887543211
Q ss_pred CC-------CCHHHHHHHHHHHHHHcCCccc---cC------CcCCccccCCC-CCCCHHHHHHHHHHHHHHHHcCCCEE
Q 006897 176 KG-------MSHKEKEDRVESLMDELGLTHV---AG------SFVGDEENRGI-SGLDSTSALQVIELLASMAKAKQRTV 238 (627)
Q Consensus 176 ~~-------~~~~~~~~~v~~~l~~lgL~~~---~~------~~~gGe~qrPt-sgLD~~~~~~i~~~L~~l~~~~g~Ti 238 (627)
.+ .......+.+.+.++.-|.... .- .+..-.+.|+. .+||+..... .+.++.+.+ .+.++
T Consensus 72 ~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~-~~~~i 149 (189)
T 2bdt_A 72 AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKGI-DERYF 149 (189)
T ss_dssp TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTTC-CTTSE
T ss_pred cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcCC-CccEE
Confidence 11 1011222333333321122100 00 00011112222 5899988888 888888753 57899
Q ss_pred EEEccC-ccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 239 VLSIHQ-PSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 239 i~~tH~-~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
|.++|+ ++ ++.+.||+|+ ++|+++..|+++-+
T Consensus 150 i~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 150 YNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp EECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred EeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 999998 87 4899999999 99999999987654
No 97
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.36 E-value=1.1e-13 Score=160.44 Aligned_cols=157 Identities=13% Similarity=0.107 Sum_probs=99.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
++.+++|+|++ ++|++++|+||||||||||||+|+|+..... .|. .+.. -+..+++++| +++.++
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q--~G~------~vpa---~~~~i~~~~~---i~~~~~ 658 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY--IGS------YVPA---QKVEIGPIDR---IFTRVG 658 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT--TTC------CBSS---SEEEECCCCE---EEEEEC
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh--cCc------ccch---hcccceeHHH---HHhhCC
Confidence 35689999999 9999999999999999999999999753211 121 1111 1234677665 667789
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHH-HHHHHHHHHcCCCEEEEE
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQV-IELLASMAKAKQRTVVLS 241 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i-~~~L~~l~~~~g~Tii~~ 241 (627)
+.|++..+.. .. ..+. .++..+++.+. ...-++-.| |++|+|+.....+ .++++.++++.|.|+|++
T Consensus 659 ~~d~l~~~~s----tf-~~e~-~~~~~il~~a~---~psLlLLDE---p~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~ 726 (800)
T 1wb9_A 659 AADDLASGRS----TF-MVEM-TETANILHNAT---EYSLVLMDE---IGRGTSTYDGLSLAWACAENLANKIKALTLFA 726 (800)
T ss_dssp ---------------C-HHHH-HHHHHHHHHCC---TTEEEEEES---CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhhhh----hh-hHHH-HHHHHHHHhcc---CCCEEEEEC---CCCCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence 9999876532 11 1222 23444444321 000011222 8888888777665 778888876458999999
Q ss_pred ccCccHHHHHHhhhheeecCCeEEeeC
Q 006897 242 IHQPSYRILQYISKFLILSRGSVVHYG 268 (627)
Q Consensus 242 tH~~~~~i~~~~D~i~vL~~G~iv~~G 268 (627)
||+++ +.++||++..+.+|++....
T Consensus 727 TH~~e--l~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 727 THYFE--LTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp CSCGG--GGGHHHHSTTEEEEEEEEEE
T ss_pred eCCHH--HHHHhhhhhceEEEEEEEEE
Confidence 99986 45799999888888886643
No 98
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.34 E-value=2.4e-14 Score=151.39 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=104.3
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCC-Cccce-EEECCccCCChhhhcccEEEEccCCCCCC
Q 006897 85 HILKSV-SFEARDSEILAVVGPSGTGKSSLLRIISGRV--RDQD-FDPRS-ITVNCHQIKKPAQLRKICGFVAQEDNLLP 159 (627)
Q Consensus 85 ~iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~--~~~~-~~~G~-i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~ 159 (627)
..||++ ++.+++|++++|+||||||||||++.|++.. +|+. ...|. +++++++.. .++++++++|+..+++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~----~~~~i~~i~q~~~~~~ 193 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----RPERIREIAQNRGLDP 193 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC----CHHHHHHHHHTTTCCH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC----CHHHHHHHHHHcCCCH
Confidence 357776 6899999999999999999999999999987 4432 01267 889887631 2356788899887766
Q ss_pred CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccC-------CCCCCCHHH------------H
Q 006897 160 LLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENR-------GISGLDSTS------------A 220 (627)
Q Consensus 160 ~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qr-------PtsgLD~~~------------~ 220 (627)
. ++.||+.+.. ........+.++.+ ......++||+.+- |++++|+.. .
T Consensus 194 ~-~v~~ni~~~~-----~~~~~~~~~~l~~~------~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~ 261 (349)
T 1pzn_A 194 D-EVLKHIYVAR-----AFNSNHQMLLVQQA------EDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKL 261 (349)
T ss_dssp H-HHGGGEEEEE-----CCSHHHHHHHHHHH------HHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHH
T ss_pred H-HHhhCEEEEe-----cCChHHHHHHHHHH------HHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHH
Confidence 5 8888876531 11222222222211 12223345665322 899999852 4
Q ss_pred HHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCC
Q 006897 221 LQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269 (627)
Q Consensus 221 ~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 269 (627)
.++++.|++++++.|+|||+++|... +....++.......|++++++.
T Consensus 262 ~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 262 AKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred HHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 67778888888878999999999876 3444455566666777665554
No 99
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.33 E-value=5.9e-13 Score=134.99 Aligned_cols=133 Identities=15% Similarity=0.193 Sum_probs=87.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHH
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
.+|+|+| +++|++++|+||||||||||+++|+|+++|.. .|+|.++|.++.. ..+..+++++|...-....+.+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~--~G~I~~~g~~i~~--~~~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIEDPIEY--VFKHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHC--CCEEEEEESSCCS--CCCCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCC--CCEEEEcCCccee--ecCCcceeeeHHHhCCCHHHHH
Confidence 3899999 99999999999999999999999999998741 3999999877421 1223345666631100101111
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccC
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQ 244 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~ 244 (627)
..+..+|.. + .+-++-|| |+ |+.+...++ +. +. .|.+|++++|+
T Consensus 89 --------------------~~la~aL~~-~----p~illlDE---p~---D~~~~~~~l---~~-~~-~g~~vl~t~H~ 132 (261)
T 2eyu_A 89 --------------------DALRAALRE-D----PDVIFVGE---MR---DLETVETAL---RA-AE-TGHLVFGTLHT 132 (261)
T ss_dssp --------------------HHHHHHHHH-C----CSEEEESC---CC---SHHHHHHHH---HH-HH-TTCEEEEEECC
T ss_pred --------------------HHHHHHHhh-C----CCEEEeCC---CC---CHHHHHHHH---HH-Hc-cCCEEEEEeCc
Confidence 112222221 1 12222344 55 888765443 33 33 58999999999
Q ss_pred ccHHHHHHhhhheeecC
Q 006897 245 PSYRILQYISKFLILSR 261 (627)
Q Consensus 245 ~~~~i~~~~D~i~vL~~ 261 (627)
.+ +.+.+||++.|..
T Consensus 133 ~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 133 NT--AIDTIHRIVDIFP 147 (261)
T ss_dssp SS--HHHHHHHHHHTSC
T ss_pred ch--HHHHHHHHhhhcC
Confidence 87 5789999999865
No 100
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.33 E-value=6.8e-14 Score=138.03 Aligned_cols=169 Identities=13% Similarity=0.097 Sum_probs=100.0
Q ss_pred cceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhc---ccEEEEccCCCCCC
Q 006897 84 LHILKSVSF-EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR---KICGFVAQEDNLLP 159 (627)
Q Consensus 84 ~~iL~~vsl-~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r---~~ig~v~Q~~~l~~ 159 (627)
.+.|+++.. .+++|++++|+||||||||||++.|++...+.+ |.+.+.+.+. ...+++ ..+++.+|+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEE-SRDSIIRQAKQFNWDFEEYIEK- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSS-CHHHHHHHHHHTTCCCGGGBTT-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEccc-CHHHHHHHHHHhcchHHHHhhC-
Confidence 457899986 899999999999999999999999998876532 6777665442 222211 1344444432100
Q ss_pred CCCHHHHHH--HHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCC--CHHHHHHHHHHHHHHHHcCC
Q 006897 160 LLTVKETLM--FSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGL--DSTSALQVIELLASMAKAKQ 235 (627)
Q Consensus 160 ~lTV~e~l~--~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgL--D~~~~~~i~~~L~~l~~~~g 235 (627)
.+.+.+... +.........+..+..+.+.+.+...+.+.. -++-.| |++++ |+....++++.|++++++.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--llilDe---~~~~~~~d~~~~~~~~~~l~~~~~~~~ 158 (235)
T 2w0m_A 84 KLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKA--RLVIDS---VSALFLDKPAMARKISYYLKRVLNKWN 158 (235)
T ss_dssp TEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCE--EEEEET---GGGGSSSCGGGHHHHHHHHHHHHHHTT
T ss_pred CEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCce--EEEEEC---chHhhcCCHHHHHHHHHHHHHHHHhCC
Confidence 011100000 0000000111233334444555444332200 111112 66555 99889999999999988789
Q ss_pred CEEEEEccCcc-------HHHHHHhhhheeecCC
Q 006897 236 RTVVLSIHQPS-------YRILQYISKFLILSRG 262 (627)
Q Consensus 236 ~Tii~~tH~~~-------~~i~~~~D~i~vL~~G 262 (627)
.|||+++|+.. ..+.++||++++|++.
T Consensus 159 ~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 159 FTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp EEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99999999982 1378899999999864
No 101
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.32 E-value=4.5e-13 Score=145.81 Aligned_cols=174 Identities=10% Similarity=0.104 Sum_probs=107.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh------hh--hcccEEEEccCCCCC
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP------AQ--LRKICGFVAQEDNLL 158 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~------~~--~r~~ig~v~Q~~~l~ 158 (627)
-+++||++++|++++|+||||||||||+++|+|++++.+ |+|.++|.+.... .. .|+.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~---G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG---KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcC---CeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 368999999999999999999999999999999998754 9999987764331 11 356799999998888
Q ss_pred CCCCHHHHHHHHHHhc-------CCCC--CHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHH
Q 006897 159 PLLTVKETLMFSANFR-------LKGM--SHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLAS 229 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~-------~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~ 229 (627)
+.+++++|+.++..-. ..+. .+......+.++..... ...-+......--||+.+....++.++.
T Consensus 360 p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar------~l~~~~P~evLLvLDattGq~al~~ak~ 433 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMK------KLDVEAPHEVMLTIDASTGQNAVSQAKL 433 (503)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHH------TTCTTCSSEEEEEEEGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHH------HhccCCCCeeEEEecCcccHHHHHHHHH
Confidence 8889999999875321 1111 11111111222211111 0000000011113455555555666777
Q ss_pred HHHcCCCEEEEEccCccHHHHHHhhhheeec--CCeEEeeCCHH
Q 006897 230 MAKAKQRTVVLSIHQPSYRILQYISKFLILS--RGSVVHYGSLE 271 (627)
Q Consensus 230 l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 271 (627)
+.+..|.|.+++|| ++. ..+..+.+-++. +..|.+.|.-+
T Consensus 434 f~~~~~itgvIlTK-LD~-takgG~~lsi~~~~~~PI~fig~Ge 475 (503)
T 2yhs_A 434 FHEAVGLTGITLTK-LDG-TAKGGVIFSVADQFGIPIRYIGVGE 475 (503)
T ss_dssp HHHHTCCSEEEEEC-GGG-CSCCTHHHHHHHHHCCCEEEEECSS
T ss_pred HHhhcCCCEEEEEc-CCC-cccccHHHHHHHHHCCCEEEEecCC
Confidence 77667899999999 332 233333333333 23555555443
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.29 E-value=5.2e-13 Score=148.94 Aligned_cols=134 Identities=17% Similarity=0.172 Sum_probs=95.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHH
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFS 170 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~ 170 (627)
++.+++|++++|+||||||||||++.++|..++. |+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~---------------~vi~~~~ee~~----~~l~~~~~-- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE---------------RAILFAYEESR----AQLLRNAY-- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC---------------CEEEEESSSCH----HHHHHHHH--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC---------------CEEEEEEeCCH----HHHHHHHH--
Confidence 4599999999999999999999999999987763 32 11345555531 02222211
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC-----------------CCCCCCHH-----HHHHHH
Q 006897 171 ANFRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR-----------------GISGLDST-----SALQVI 224 (627)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr-----------------PtsgLD~~-----~~~~i~ 224 (627)
+ .+.+. ++ +...|+....+ .++|||+|| ||++||.. .+..+.
T Consensus 330 ---~-~g~~~-------~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~ 397 (525)
T 1tf7_A 330 ---S-WGMDF-------EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVI 397 (525)
T ss_dssp ---T-TSCCH-------HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHH
T ss_pred ---H-cCCCH-------HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHH
Confidence 1 11221 11 22345544433 345788776 99999999 999999
Q ss_pred HHHHHHHHcCCCEEEEEccCc----------cHHHHHHhhhheeecCCe
Q 006897 225 ELLASMAKAKQRTVVLSIHQP----------SYRILQYISKFLILSRGS 263 (627)
Q Consensus 225 ~~L~~l~~~~g~Tii~~tH~~----------~~~i~~~~D~i~vL~~G~ 263 (627)
++++.+++ .|.|+|+++|+. . .+..+||++++|++|+
T Consensus 398 ~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 398 GVTGYAKQ-EEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHH-TTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEEE
T ss_pred HHHHHHHh-CCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEEE
Confidence 99999865 699999999998 5 4678899999999886
No 103
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.27 E-value=1.5e-12 Score=136.08 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=97.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh------hhhcc--cEEEEccCCCCCCCCCHHH
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP------AQLRK--ICGFVAQEDNLLPLLTVKE 165 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~------~~~r~--~ig~v~Q~~~l~~~lTV~e 165 (627)
.++|++++|+||||||||||++.|+|+++|.+ |+|.+.|.++... ..+++ .+.+++|+..++|.++|+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~---g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHG---FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcC---CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 37899999999999999999999999998864 9999999886321 11223 4669999999999999999
Q ss_pred HHHHHHHhcC-------CCCC--HHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 006897 166 TLMFSANFRL-------KGMS--HKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQR 236 (627)
Q Consensus 166 ~l~~~~~~~~-------~~~~--~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~ 236 (627)
|+.++..... .+.. .....+.+..+...+. ...|+..||+.+..++++.++.+.++.+.
T Consensus 203 ~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~------------~de~llvLDa~t~~~~~~~~~~~~~~~~i 270 (328)
T 3e70_C 203 AIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTK------------PNLVIFVGDALAGNAIVEQARQFNEAVKI 270 (328)
T ss_dssp HHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHC------------CSEEEEEEEGGGTTHHHHHHHHHHHHSCC
T ss_pred HHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhc------------CCCCEEEEecHHHHHHHHHHHHHHHhcCC
Confidence 9998753211 0110 0111111111111111 12367788998889999999999877899
Q ss_pred EEEEEccCc
Q 006897 237 TVVLSIHQP 245 (627)
Q Consensus 237 Tii~~tH~~ 245 (627)
|+|++||..
T Consensus 271 t~iilTKlD 279 (328)
T 3e70_C 271 DGIILTKLD 279 (328)
T ss_dssp CEEEEECGG
T ss_pred CEEEEeCcC
Confidence 999999943
No 104
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.27 E-value=1.7e-12 Score=151.82 Aligned_cols=156 Identities=10% Similarity=0.165 Sum_probs=91.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
++.|++|+||++++|++++|+||||||||||||+++++.... ..|. .+.. . ...++. -+.++..+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa-~--~~~i~~---~d~i~~~ig 724 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPA-E--EATIGI---VDGIFTRMG 724 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSS-S--EEEEEC---CSEEEEEC-
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccc-h--hhhhhH---HHHHHHhCC
Confidence 457999999999999999999999999999999998653211 0011 0000 0 111222 233455566
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHH-HHHHHHHHcCCCEEEEE
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVI-ELLASMAKAKQRTVVLS 241 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~-~~L~~l~~~~g~Tii~~ 241 (627)
+.|++..+.. .. ..+. .+...++..+. + ..-++-.| |++|||+.....+. .+++.++++.|.|+|++
T Consensus 725 ~~d~l~~~~s----tf-s~em-~~~~~il~~a~--~-p~LlLLDE---P~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v 792 (918)
T 3thx_B 725 AADNIYKGRS----TF-MEEL-TDTAEIIRKAT--S-QSLVILDE---LGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 792 (918)
T ss_dssp ---------C----CH-HHHH-HHHHHHHHHCC--T-TCEEEEES---TTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHhHH----Hh-hHHH-HHHHHHHHhcc--C-CCEEEEeC---CCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 7777754321 11 1222 22333443321 0 00011222 99999999999987 77888876569999999
Q ss_pred ccCccHHHHHHhhhhee-ecCCeEEe
Q 006897 242 IHQPSYRILQYISKFLI-LSRGSVVH 266 (627)
Q Consensus 242 tH~~~~~i~~~~D~i~v-L~~G~iv~ 266 (627)
||+++ +.+++|+.-- +.++++.+
T Consensus 793 TH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 793 THYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp CSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred eCcHH--HHHHHhhcccceEEEEEEE
Confidence 99986 5688998753 56666654
No 105
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.26 E-value=4.2e-13 Score=154.70 Aligned_cols=149 Identities=18% Similarity=0.173 Sum_probs=91.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR-DQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLL 161 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~-~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~l 161 (627)
++.+++|+||+ |++++|+||||||||||||+|+|+.. +. .|.+. + ..+..+++++| +++.+
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p-----a~~~~i~~v~~---i~~~~ 626 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P-----AEEAHLPLFDG---IYTRI 626 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S-----SSEEEECCCSE---EEEEC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e-----hhccceeeHHH---hhccC
Confidence 35699999999 99999999999999999999999864 32 25431 1 12346888877 67778
Q ss_pred CHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHH-HHHHHHHHHHHHcCCCEEE
Q 006897 162 TVKETLMFSANFRLKGMSHK-EKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSA-LQVIELLASMAKAKQRTVV 239 (627)
Q Consensus 162 TV~e~l~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~-~~i~~~L~~l~~~~g~Tii 239 (627)
++.||+..+. +.- .....+..+++.+. ...-++-.|.-|+|++||+.+. ..+++.|++ .|.|+|
T Consensus 627 ~~~d~l~~g~-------S~~~~e~~~la~il~~a~---~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl 692 (765)
T 1ewq_A 627 GASDDLAGGK-------STFMVEMEEVALILKEAT---ENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTL 692 (765)
T ss_dssp CC------CC-------SHHHHHHHHHHHHHHHCC---TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEE
T ss_pred CHHHHHHhcc-------cHHHHHHHHHHHHHHhcc---CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEE
Confidence 9999987642 111 11112233333211 1111124555556999999875 578887765 378999
Q ss_pred EEccCccHHHHHHhhhheeecCCeEEee
Q 006897 240 LSIHQPSYRILQYISKFLILSRGSVVHY 267 (627)
Q Consensus 240 ~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 267 (627)
++||+.+ +.+++ .-.+.++++...
T Consensus 693 ~~TH~~~--l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 693 FATHYFE--LTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp EECCCHH--HHTCC--CTTEEEEEEEEE
T ss_pred EEeCCHH--HHHhh--hhcceEEEEEEE
Confidence 9999975 44555 223444555443
No 106
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.23 E-value=7.4e-12 Score=132.39 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=47.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCCeEEeeCCHHHH
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 273 (627)
|+++||+..+..+++.|+++. .|+|++|| ++ + .+|++++|++|+++..|+++++
T Consensus 301 p~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~-~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 301 FTAELDPHRRQYLLDLAASVP----QAIVTGTE-LA-P---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp GGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CC-T---TCSEEEEEETTEEEECCCTTTS
T ss_pred ccccCCHHHHHHHHHHHHhcC----cEEEEEEe-cc-c---cCCEEEEEECCEEEecCCHHHH
Confidence 899999999999999998762 59999999 44 2 8999999999999999998765
No 107
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.17 E-value=3.8e-14 Score=150.92 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=98.0
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCC-CccceEEEC----CccCC-ChhhhcccEEEEccCCCC
Q 006897 86 ILKSVSFEARD--SEILAVVGPSGTGKSSLLRIISGRVRDQD-FDPRSITVN----CHQIK-KPAQLRKICGFVAQEDNL 157 (627)
Q Consensus 86 iL~~vsl~i~~--Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~-~~~G~i~i~----g~~~~-~~~~~r~~ig~v~Q~~~l 157 (627)
+.+.|+++|++ |+.++|+||||||||||+|+|+|+++|.. ...|++.++ |.++. ...++ +.|++++|+..+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 46789999999 99999999999999999999999998742 011666653 33321 12333 457888886544
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCHHHH-----------HHHHHHHHHHcCCccccCCcCCcccc------CCCCCCCHHHH
Q 006897 158 LPLLTVKETLMFSANFRLKGMSHKEK-----------EDRVESLMDELGLTHVAGSFVGDEEN------RGISGLDSTSA 220 (627)
Q Consensus 158 ~~~lTV~e~l~~~~~~~~~~~~~~~~-----------~~~v~~~l~~lgL~~~~~~~~gGe~q------rPtsgLD~~~~ 220 (627)
+. .|+.||+.+.. ...... ...+..++...+.+- ..-+|.. -++.++|+..+
T Consensus 236 ~~-~t~~~nl~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l----llLdE~~~p~~~~g~~~sld~~~r 304 (365)
T 1lw7_A 236 YA-VRHSHKIAFID------TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDV----TILLKNNTEWVDDGLRSLGSQKQR 304 (365)
T ss_dssp HH-HHHCSSEEEES------SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSE----EEEEECCCC-----------CCSH
T ss_pred HH-HhccCCEEEEe------CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCE----EEECCCCCCcccCCCcCCccHHHH
Confidence 43 46666654320 011000 011122222112111 1112211 14568999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecC
Q 006897 221 LQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSR 261 (627)
Q Consensus 221 ~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~ 261 (627)
..+.+.|+++.++.|.+||+++|. + +..+++|++.++++
T Consensus 305 ~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 305 QQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK 343 (365)
T ss_dssp HHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH
Confidence 999999999876668999999985 4 36788998888764
No 108
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.16 E-value=3.5e-13 Score=144.79 Aligned_cols=89 Identities=20% Similarity=0.221 Sum_probs=61.7
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEI--LAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~--~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i 133 (627)
.+++++ ++.|+ +.+ |+++|+++++|++ +||+||||||||||+|+|+|+.-. |.-.
T Consensus 16 ~l~~~~-~~~y~---------------~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~-----g~~~- 72 (427)
T 2qag_B 16 TVPLAG-HVGFD---------------SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE-----GEPA- 72 (427)
T ss_dssp -CCCCC-CC-CC-----------------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-----------
T ss_pred eEEEee-EEEEC---------------Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc-----CCcC-
Confidence 356666 77772 234 9999999999999 999999999999999999998421 2111
Q ss_pred CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHH
Q 006897 134 NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFS 170 (627)
Q Consensus 134 ~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~ 170 (627)
.. ..+...++.++|++|++.+++.+||.||+.++
T Consensus 73 ~~---~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 73 TH---TQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp -----CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred CC---CCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 00 01122355799999999888889999998775
No 109
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.16 E-value=9.5e-11 Score=123.31 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
||+|||+..+..+++.|+++.++ |.|||++|||++ +.+.||++++|+
T Consensus 281 p~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~--~~~~~d~~~~l~ 327 (339)
T 3qkt_A 281 PTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE--LKDAADHVIRIS 327 (339)
T ss_dssp CCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG--GGGGCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhCCEEEEEE
Confidence 99999999999999999998654 789999999965 678999999985
No 110
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.15 E-value=2.1e-11 Score=135.61 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=48.8
Q ss_pred CCccccC--------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeecCC
Q 006897 204 VGDEENR--------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRG 262 (627)
Q Consensus 204 ~gGe~qr--------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~~G 262 (627)
+|||+|| ||+|||+.++..+.+.|+++++ |+|||+|||+++ +...||++++|++|
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~--~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQ--IAARAHHHYKVEKQ 473 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHH--HHHHSSEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH--HHHhCCEEEEEecc
Confidence 7999987 7999999999999999999974 789999999986 45679999999654
No 111
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.15 E-value=5.3e-12 Score=130.77 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=72.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE---CCccCCCh-hhhc-ccEEEEccCCCCC-----CCCC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV---NCHQIKKP-AQLR-KICGFVAQEDNLL-----PLLT 162 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i---~g~~~~~~-~~~r-~~ig~v~Q~~~l~-----~~lT 162 (627)
++.+|++++|+||||||||||+|+|+ +.+|.. |+|.+ +|++.... ...+ +.+|||+|++.+. +.+|
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~---G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt 236 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRT---QEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVK 236 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCC---SCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcc---cccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCC
Confidence 34579999999999999999999999 888753 99999 88875432 2223 3689999998543 6789
Q ss_pred HHHHH--HHH----HHhcCCC-CCHHHHHHHHHHHHHHcCCcc-ccCCcC---CccccC
Q 006897 163 VKETL--MFS----ANFRLKG-MSHKEKEDRVESLMDELGLTH-VAGSFV---GDEENR 210 (627)
Q Consensus 163 V~e~l--~~~----~~~~~~~-~~~~~~~~~v~~~l~~lgL~~-~~~~~~---gGe~qr 210 (627)
+ ||+ .|+ ..++..+ ...++...+++++++.++|.+ ..+++. .|++||
T Consensus 237 ~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R 294 (302)
T 2yv5_A 237 P-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEE 294 (302)
T ss_dssp G-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTT
T ss_pred H-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9 888 453 1111222 123344567999999999975 444332 445554
No 112
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.15 E-value=6.2e-13 Score=147.12 Aligned_cols=164 Identities=12% Similarity=0.119 Sum_probs=102.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCC-------
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDN------- 156 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~------- 156 (627)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+. |.|+++|.+..... -...++++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~---giitied~~E~~~~-~~~~v~~~~r~~~~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA---KVVSIEDTREIKLY-HENWIAEVTRTGMGEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC---CEEEEESSCCCCCC-CSSEEEEECBCCSSSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC---CEEEEcCcccccCC-CCCeEEEEeecccccCCcCH
Confidence 457899999999999999999999999999999999998864 99999886521111 1234555555432
Q ss_pred ---------------CCCCCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHcCC-----cc----cc-------CCc
Q 006897 157 ---------------LLPLLTVKETLMFSANFRLKG--MSHKEKEDRVESLMDELGL-----TH----VA-------GSF 203 (627)
Q Consensus 157 ---------------l~~~lTV~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL-----~~----~~-------~~~ 203 (627)
++..++..|++.+........ .+. .....+.++++++.. .. .. ..+
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~ 401 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWV 401 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEE
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEE
Confidence 123445555444322211100 000 000112233333322 11 11 123
Q ss_pred CCccccC------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEE--EccCccHHHHHHhh
Q 006897 204 VGDEENR------GISGLDSTSALQVIELLASMAKAKQRTVVL--SIHQPSYRILQYIS 254 (627)
Q Consensus 204 ~gGe~qr------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~--~tH~~~~~i~~~~D 254 (627)
.||+++| -++|||+.....+++.|.++.+ .|+|+++ +||+++ ++.+.|+
T Consensus 402 s~G~~~R~~~ai~E~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 402 RGNTRLRRTKEVNEILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp SSSCEEEEEEEEEEEEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHHH-HHHHHHT
T ss_pred eCCCceEEEEEEEEEcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHHH-HHHHHcC
Confidence 4788766 3789999888878888877754 4789885 899998 5777764
No 113
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.14 E-value=1.8e-11 Score=128.87 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=87.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCccceEEEC-CccCCChhhhcccEEEEccCCCCCCCCCHH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR-DQDFDPRSITVN-CHQIKKPAQLRKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~-~~~~~~G~i~i~-g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~ 164 (627)
++++++. .+|++++|+||||||||||+|+|+|+.+ +.. |+|.++ |++.. ...++.+++++|+..+++..+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~---G~I~~~~G~g~~--tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILT---NDVSNVSGLGQH--TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCC---C---------------CCCEEEECTTSCEEEECHHHH
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccccc---CCccccCCCCcc--ceEEEEEEEECCCCEecCcccHH
Confidence 5666664 4899999999999999999999999998 753 999887 65521 23456799999998888888998
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcC---CccccC--CCCCCCHHHHHHH-HHHHHHH
Q 006897 165 ETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFV---GDEENR--GISGLDSTSALQV-IELLASM 230 (627)
Q Consensus 165 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~---gGe~qr--PtsgLD~~~~~~i-~~~L~~l 230 (627)
|+. +.+.++++..+++.++++.+|+.+..+... .|+++| --.|+++..+.+- .++++++
T Consensus 280 e~~-------l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lSG~~~r~ala~gli~~~R~~~y~~l~~e~ 344 (358)
T 2rcn_A 280 EFG-------LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAIAETRFENYHRILESM 344 (358)
T ss_dssp TCC-------CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCTTCHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred Hhh-------hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 841 223456667778889999999987665432 277777 2234444445444 4555555
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.13 E-value=1.4e-11 Score=132.73 Aligned_cols=158 Identities=17% Similarity=0.159 Sum_probs=81.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++||+++|. .+.+++|+||+| +|+||||||||||+++|+|...+.... |.+.+++
T Consensus 11 ~l~~~~l~~~y~---------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~-~~~~~~~ 68 (418)
T 2qag_C 11 YVGFANLPNQVY---------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY-PGPSHRI 68 (418)
T ss_dssp ----CCCCCCTT---------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC-CSCC---
T ss_pred cEEEEecceeEC---------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC-CCcccCC
Confidence 689999999883 346899999998 999999999999999999998753211 2222221
Q ss_pred ccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCcc--ccCCcCCccc-----
Q 006897 136 HQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH--VAGSFVGDEE----- 208 (627)
Q Consensus 136 ~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~~gGe~----- 208 (627)
.+ ...++.+++++|++.+++.+||.||+.++..... ........+.+++.++..-... ++..+..+.+
T Consensus 69 ~~----t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL 143 (418)
T 2qag_C 69 KK----TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL 143 (418)
T ss_dssp ------CCEEEEEECC------CEEEEEEECC------------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEE
T ss_pred cc----ceeeeeEEEEEecCCcccceeeeechhhhhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence 11 1123568999999888888999999988643210 0001112222333333221111 1112222222
Q ss_pred --cCCC-CCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 209 --NRGI-SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 209 --qrPt-sgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
..|| .+||+... +.++++. .+.++|++.|..+
T Consensus 144 ~ldePt~~~L~~~d~----~~lk~L~--~~v~iIlVinK~D 178 (418)
T 2qag_C 144 YFIAPSGHGLKPLDI----EFMKRLH--EKVNIIPLIAKAD 178 (418)
T ss_dssp EECCC-CCSCCHHHH----HHHHHHT--TTSEEEEEEESTT
T ss_pred EEecCcccCCCHHHH----HHHHHHh--ccCcEEEEEEccc
Confidence 1288 69998763 4445553 2678888888654
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.12 E-value=3.9e-11 Score=119.17 Aligned_cols=155 Identities=13% Similarity=0.203 Sum_probs=84.9
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCC--CCccceEEECCccCCChh---hhcccEEEEccCCCC
Q 006897 86 ILKSVS-FEARDSEILAVVGPSGTGKSSLLRIISG--RVRDQ--DFDPRSITVNCHQIKKPA---QLRKICGFVAQEDNL 157 (627)
Q Consensus 86 iL~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~G--l~~~~--~~~~G~i~i~g~~~~~~~---~~r~~ig~v~Q~~~l 157 (627)
.||.+- .-+++|++++|+||||||||||++.|++ ..++. ....|.+++++.+..... ...+.+++.+|+
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--- 88 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--- 88 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH---
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH---
Confidence 355443 5699999999999999999999999999 45431 012388899887632222 233445665542
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCHHHHHH---HHHHHHHHcCCcc-ccCCcCCccccCCCCCCCHH-------H-----HH
Q 006897 158 LPLLTVKETLMFSANFRLKGMSHKEKED---RVESLMDELGLTH-VAGSFVGDEENRGISGLDST-------S-----AL 221 (627)
Q Consensus 158 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~---~v~~~l~~lgL~~-~~~~~~gGe~qrPtsgLD~~-------~-----~~ 221 (627)
+.+|+.+. ...+..+..+ .+.+.++..+.+- ..|. |++.+|+. . ..
T Consensus 89 -----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~--------~~~~~~~~~~~~~~~~~r~~~~~ 150 (243)
T 1n0w_A 89 -----VLDNVAYA-----RAFNTDHQTQLLYQASAMMVESRYALLIVDS--------ATALYRTDYSGRGELSARQMHLA 150 (243)
T ss_dssp -----HHHTEEEE-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEET--------SSGGGC-------CHHHHHHHHH
T ss_pred -----HhhCeEEE-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeC--------chHHHHHHhcCCccHHHHHHHHH
Confidence 22332211 0111122111 2333333211110 0111 44555543 2 45
Q ss_pred HHHHHHHHHHHcCCCEEEEEccCccHHHHH-------------------HhhhheeecCC
Q 006897 222 QVIELLASMAKAKQRTVVLSIHQPSYRILQ-------------------YISKFLILSRG 262 (627)
Q Consensus 222 ~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~-------------------~~D~i~vL~~G 262 (627)
++++.|++++++.|+|||+++|.... ... .||.+++|++|
T Consensus 151 ~~~~~l~~~~~~~~~tvi~~~h~~~~-~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 151 RFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeeeec-CCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 67777888887779999999997652 332 78999988865
No 116
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.12 E-value=1.1e-12 Score=126.61 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=45.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQED 155 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~ 155 (627)
||+++|+||||||||||+++|+|+++ +. | |.++|.+.......++.+||++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~---G-i~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SS---G-VPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HT---T-CCCEEEECCEEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cC---C-EEEcCEecchhHhhhceEEEEEEec
Confidence 78999999999999999999999987 53 8 8888877533345678899999974
No 117
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.12 E-value=5.1e-12 Score=130.83 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=66.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE---CCccCCChh-hhc-ccEEEEccCCC----------
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV---NCHQIKKPA-QLR-KICGFVAQEDN---------- 156 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i---~g~~~~~~~-~~r-~~ig~v~Q~~~---------- 156 (627)
|++.+|++++|+||||||||||+|+|+|+.+|+. |+|.+ +|+++.... ..+ +.+|||+|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~---G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRV---SEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccc---cceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 3456899999999999999999999999999864 99999 888754321 222 36899999974
Q ss_pred ------CCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCc
Q 006897 157 ------LLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLT 197 (627)
Q Consensus 157 ------l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 197 (627)
++|.+|+ ||+.|+. +. ...+...++.++|+.+||.
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~~-~~----~~~e~~~~v~~~l~~~~L~ 281 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFSD-CN----HVDEPECGVKEAVENGEIA 281 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSSTT-CC----SSSCSSCHHHHHHHHTSSC
T ss_pred HHHHHHHHHhccc-ccCcCCC-Cc----CCCCCCcHHHHHHHcCCCC
Confidence 5888999 9998752 11 1233456789999999994
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.10 E-value=2.7e-13 Score=130.10 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=53.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHH
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA 171 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~ 171 (627)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++......++.++|++|+.. +.++|.||+.+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVA 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHH
Confidence 3679999999999999999999999998 33 39999998764211112344678887644 3578999997754
No 119
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.10 E-value=2.9e-11 Score=127.83 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=83.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHH
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSAN 172 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~ 172 (627)
...+|++++|+|||||||||||++|+|++++.. .|.|...+.++ . ...+...++++|........+..+.|.-+.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~-e-~~~~~~~~~v~q~~~~~~~~~~~~~La~aL- 193 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPI-E-FVHESKKCLVNQREVHRDTLGFSEALRSAL- 193 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSC-C-SCCCCSSSEEEEEEBTTTBSCHHHHHHHHT-
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcH-H-hhhhccccceeeeeeccccCCHHHHHHHHh-
Confidence 678999999999999999999999999998752 26665544442 1 123344567777654444456655333221
Q ss_pred hcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHH
Q 006897 173 FRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQY 252 (627)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~ 252 (627)
+ ...+-++-|| |+ |+.+ .+.+.+.+. .|.||++++|+.+. .+.
T Consensus 194 -~-----------------------~~PdvillDE---p~---d~e~----~~~~~~~~~-~G~~vl~t~H~~~~--~~~ 236 (356)
T 3jvv_A 194 -R-----------------------EDPDIILVGE---MR---DLET----IRLALTAAE-TGHLVFGTLHTTSA--AKT 236 (356)
T ss_dssp -T-----------------------SCCSEEEESC---CC---SHHH----HHHHHHHHH-TTCEEEEEESCSSH--HHH
T ss_pred -h-----------------------hCcCEEecCC---CC---CHHH----HHHHHHHHh-cCCEEEEEEccChH--HHH
Confidence 1 1122222344 44 5554 344444444 59999999999983 488
Q ss_pred hhhheeecCC
Q 006897 253 ISKFLILSRG 262 (627)
Q Consensus 253 ~D~i~vL~~G 262 (627)
+||++.|..|
T Consensus 237 ~dRli~l~~~ 246 (356)
T 3jvv_A 237 IDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTSCH
T ss_pred HHHHhhhcCc
Confidence 9999999665
No 120
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.10 E-value=1e-12 Score=136.57 Aligned_cols=96 Identities=14% Similarity=0.285 Sum_probs=79.1
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHH
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEA-------------------RDSEILAVVGPSGTGKSSLLRI 116 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i-------------------~~Ge~~aIiGpnGsGKSTLl~~ 116 (627)
+|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++
T Consensus 37 ~i~~~~v~~~y~-----------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~ 99 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARV 99 (308)
T ss_dssp TCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHH
T ss_pred ccchHhHHHHHH-----------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHH
Confidence 588999999882 4789999988 9999999999999999999999
Q ss_pred HHcCCC--CCCCccceEEE---CCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 006897 117 ISGRVR--DQDFDPRSITV---NCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174 (627)
Q Consensus 117 L~Gl~~--~~~~~~G~i~i---~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~ 174 (627)
|+|++. |++ |+|.+ +|... . ...++.+|++ |+..+++.+++.+++.+...++
T Consensus 100 L~~~l~~~~~~---G~i~vi~~d~~~~-~-~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 100 LQALLSRWPEH---RRVELITTDGFLH-P-NQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHHTTSTTC---CCEEEEEGGGGBC-C-HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHHHhhCCCC---CeEEEEecCCccC-c-HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 999987 653 99999 88763 2 2345568888 8777778899999998876543
No 121
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.07 E-value=2.4e-11 Score=142.05 Aligned_cols=139 Identities=20% Similarity=0.318 Sum_probs=99.4
Q ss_pred HHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC--C----HHHHHHHH
Q 006897 114 LRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM--S----HKEKEDRV 187 (627)
Q Consensus 114 l~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~--~----~~~~~~~v 187 (627)
..|..++++|. .++|.++|+++.. +..+++.|++.|......... . ..+..++.
T Consensus 385 ~~C~g~rl~~~---~~~V~i~G~~i~~-----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (916)
T 3pih_A 385 SVCGGRRLNRE---ALSVKINGLNIHE-----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKR 444 (916)
T ss_dssp TTTCSCCBCTT---GGGEEETTEEHHH-----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHH
T ss_pred hhcccccCChH---hcCcEECCccHHH-----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHH
Confidence 34445566654 3889988877421 234577777776432211110 0 00112334
Q ss_pred HHHHHHcCCccc-----cCCcCCccccC--------------------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEc
Q 006897 188 ESLMDELGLTHV-----AGSFVGDEENR--------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSI 242 (627)
Q Consensus 188 ~~~l~~lgL~~~-----~~~~~gGe~qr--------------------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~t 242 (627)
.+.|..+||... ..+++|||+|| ||+|||+.....++++|+++++ .|.|||+|+
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVt 523 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVE 523 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEEC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 567888998643 34667999999 9999999999999999999975 599999999
Q ss_pred cCccHHHHHHhhhheee------cCCeEEeeCCHHHHHH
Q 006897 243 HQPSYRILQYISKFLIL------SRGSVVHYGSLELLEE 275 (627)
Q Consensus 243 H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 275 (627)
||++ ....||+|++| ++|++++.|+++++.+
T Consensus 524 Hd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9986 34669999999 8999999999998753
No 122
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.07 E-value=6.1e-13 Score=129.30 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=35.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|+++|+++.|. ..++++ +.+++|+.++|+|+||||||||++.|+|..
T Consensus 3 ~l~~~~~~~~~~----------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMS----------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEE----------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheee----------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999993 146888 889999999999999999999999999987
No 123
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.02 E-value=1.9e-10 Score=133.68 Aligned_cols=109 Identities=25% Similarity=0.402 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHhcCCCCCH----------HHHHHHHHHHHHHcCCccc-----cCCcCCccccC-------------
Q 006897 159 PLLTVKETLMFSANFRLKGMSH----------KEKEDRVESLMDELGLTHV-----AGSFVGDEENR------------- 210 (627)
Q Consensus 159 ~~lTV~e~l~~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr------------- 210 (627)
..+||.|++.|...+. .+. ++..+++ +.|+.+||+.. ..+++|||+||
T Consensus 450 ~~ltV~e~~~f~e~l~---l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~ 525 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLE---LTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTG 525 (972)
T ss_dssp HTSBHHHHHHHHHHCC---CCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCS
T ss_pred hhCCHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCC
Confidence 4689999999965543 233 3445566 45899999754 34667999999
Q ss_pred -------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHH
Q 006897 211 -------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 211 -------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
||+|||+.....+++.|+++++ .|.|||+|+||++ + .+.||+|++| ++|++++.|+++++.
T Consensus 526 ~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 526 VLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 9999999999999999999964 6999999999997 3 4689999999 789999999998764
No 124
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.01 E-value=1.7e-10 Score=117.80 Aligned_cols=133 Identities=16% Similarity=0.143 Sum_probs=85.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHH
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSAN 172 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~ 172 (627)
.+++|++++|+||||||||||++.+++.+.. |.+ +.|.+.. -...+.|+..+.... .+.+.+. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~-~~g~~~~----~~~~v~~~~~e~~~~---~~~~r~~---~ 89 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPD-LLEVGEL----PTGPVIYLPAEDPPT---AIHHRLH---A 89 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCC-TTCCCCC----CCCCEEEEESSSCHH---HHHHHHH---H
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCC-cCCCccC----CCccEEEEECCCCHH---HHHHHHH---H
Confidence 4889999999999999999999999986542 544 2344321 134578877654320 1212221 1
Q ss_pred hcCCCCCHHHHHHHHHHHHHHcCCccccC----CcCCccccC---------------CCC--CCCHHH---HHHHHHHHH
Q 006897 173 FRLKGMSHKEKEDRVESLMDELGLTHVAG----SFVGDEENR---------------GIS--GLDSTS---ALQVIELLA 228 (627)
Q Consensus 173 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----~~~gGe~qr---------------Pts--gLD~~~---~~~i~~~L~ 228 (627)
+.. ... ..+.+++++.+++.+..+ .+++|+.++ |++ ++|+.. ..++++.|+
T Consensus 90 ~g~-~~~----~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~ 164 (279)
T 1nlf_A 90 LGA-HLS----AEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRME 164 (279)
T ss_dssp HHT-TSC----HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHH
T ss_pred HHh-hcC----hhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHH
Confidence 111 111 133566778887765543 233555544 777 889744 488899999
Q ss_pred HHHHcCCCEEEEEccCcc
Q 006897 229 SMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 229 ~l~~~~g~Tii~~tH~~~ 246 (627)
+++++.|+|||+++|+..
T Consensus 165 ~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 165 AIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHCCEEEEEEEC--
T ss_pred HHHHHcCCEEEEEecCCC
Confidence 998777999999999876
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.01 E-value=3.7e-11 Score=128.02 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=83.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKE 165 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e 165 (627)
+|++++ +++|++++|+||||||||||+++|+|+++|.. .|.|.+.+.++. ...+..+++|+|...-....+...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~--~g~I~~~e~~~e--~~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIEDPIE--YVFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHS--CCEEEEEESSCC--SCCCCSSSEEEEEEBTTTBSCSHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCC--CcEEEEecccHh--hhhccCceEEEeeecCCCHHHHHH
Confidence 577776 79999999999999999999999999988741 399977776532 235667899999421000001111
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCc
Q 006897 166 TLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245 (627)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~ 245 (627)
.|. .. +-. -.+.++-|| |+ |+.+.. ..++. +. .|.+++.++|+.
T Consensus 201 ~l~--------------------~~---L~~--~pd~illdE---~~---d~e~~~---~~l~~-~~-~g~~vi~t~H~~ 244 (372)
T 2ewv_A 201 ALR--------------------AA---LRE--DPDVIFVGE---MR---DLETVE---TALRA-AE-TGHLVFGTLHTN 244 (372)
T ss_dssp HHH--------------------HH---TTS--CCSEEEESC---CC---SHHHHH---HHHHH-HT-TTCEEEECCCCC
T ss_pred HHH--------------------HH---hhh--CcCEEEECC---CC---CHHHHH---HHHHH-Hh-cCCEEEEEECcc
Confidence 111 11 111 112222344 44 665533 34443 33 588999999997
Q ss_pred cHHHHHHhhhheeecC
Q 006897 246 SYRILQYISKFLILSR 261 (627)
Q Consensus 246 ~~~i~~~~D~i~vL~~ 261 (627)
+ +.+.+||++.|..
T Consensus 245 ~--~~~~~~rl~~l~~ 258 (372)
T 2ewv_A 245 T--AIDTIHRIVDIFP 258 (372)
T ss_dssp S--HHHHHHHHHHTSC
T ss_pred h--HHHHHHHHHHhcC
Confidence 6 6789999987753
No 126
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.99 E-value=3e-11 Score=124.81 Aligned_cols=103 Identities=23% Similarity=0.316 Sum_probs=60.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE---CCccCCChhhh-cccEEEEccCCCCCC----CCCH
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV---NCHQIKKPAQL-RKICGFVAQEDNLLP----LLTV 163 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i---~g~~~~~~~~~-r~~ig~v~Q~~~l~~----~lTV 163 (627)
+++.+|++++|+||||+|||||+|+|+|+.++.. |+|.+ +|+.......+ +..+||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRT---NEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccc---cceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 5667999999999999999999999999988753 99998 77765332222 223799999987654 6799
Q ss_pred HHHHH--HHH-H-----hcCCC-CCHHHHHHHHHHHHHHcCCcc
Q 006897 164 KETLM--FSA-N-----FRLKG-MSHKEKEDRVESLMDELGLTH 198 (627)
Q Consensus 164 ~e~l~--~~~-~-----~~~~~-~~~~~~~~~v~~~l~~lgL~~ 198 (627)
|++. |.. . ++..+ ....+...+++++++.++|.+
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 8883 331 0 11111 112233456888999998864
No 127
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.98 E-value=2.4e-12 Score=135.37 Aligned_cols=87 Identities=11% Similarity=0.103 Sum_probs=71.2
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
+|+++|+++.|. .+.+|+++|+++++|++++|+||||||||||+++|+|+++|.+ |+|.+.|
T Consensus 29 ~ie~~~~~~~~~---------------~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~---g~v~i~~ 90 (337)
T 2qm8_A 29 LAESRRADHRAA---------------VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG---HKVAVLA 90 (337)
T ss_dssp HHTCSSHHHHHH---------------HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred HHeeCCcccccC---------------hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCC---CEEEEEE
Confidence 467888887772 3468999999999999999999999999999999999998754 9999998
Q ss_pred ccCCCh------hhhcccEEEEccCCCCCCC
Q 006897 136 HQIKKP------AQLRKICGFVAQEDNLLPL 160 (627)
Q Consensus 136 ~~~~~~------~~~r~~ig~v~Q~~~l~~~ 160 (627)
.++... ...++.+++++|++.+++.
T Consensus 91 ~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 91 VDPSSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp ECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred EcCcccccccchHHHhhhheeeccCcccccc
Confidence 775221 1346679999999877653
No 128
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.96 E-value=1.3e-10 Score=124.64 Aligned_cols=157 Identities=13% Similarity=0.155 Sum_probs=91.0
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCC--CccceEEECCccCCChh---hhcccEEEEccCCCC
Q 006897 86 ILKSV-SFEARDSEILAVVGPSGTGKSSLLRII--SGRVRDQD--FDPRSITVNCHQIKKPA---QLRKICGFVAQEDNL 157 (627)
Q Consensus 86 iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L--~Gl~~~~~--~~~G~i~i~g~~~~~~~---~~r~~ig~v~Q~~~l 157 (627)
-||.+ ..-+++|++++|+||||||||||++.| .+..+++. ...+.+++++++..... .+++.+|+.+|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---- 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---- 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----
Confidence 34443 367999999999999999999999944 56665421 12257888887632322 23345666554
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHHHcCCccc-cCCcCCccccCCCCCCCH------------HHHH
Q 006897 158 LPLLTVKETLMFSANFRLKGMSHKE---KEDRVESLMDELGLTHV-AGSFVGDEENRGISGLDS------------TSAL 221 (627)
Q Consensus 158 ~~~lTV~e~l~~~~~~~~~~~~~~~---~~~~v~~~l~~lgL~~~-~~~~~gGe~qrPtsgLD~------------~~~~ 221 (627)
++.||+.+.. ...... ..+++.+.+...+.+-+ .|. |++.+|+ ....
T Consensus 242 ----~vleni~~~~-----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs--------~t~~~~~~~sg~g~l~~Rq~~l~ 304 (400)
T 3lda_A 242 ----DALNNVAYAR-----AYNADHQLRLLDAAAQMMSESRFSLIVVDS--------VMALYRTDFSGRGELSARQMHLA 304 (400)
T ss_dssp ----HHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHSCEEEEEEET--------GGGGCC------CCHHHHHHHHH
T ss_pred ----hHhhcEEEec-----cCChHHHHHHHHHHHHHHHhcCCceEEecc--------hhhhCchhhcCccchHHHHHHHH
Confidence 4555544321 011122 12233344443332110 111 1122221 1126
Q ss_pred HHHHHHHHHHHcCCCEEEEEccCcc------------------HHHHHHhhhheeecCCe
Q 006897 222 QVIELLASMAKAKQRTVVLSIHQPS------------------YRILQYISKFLILSRGS 263 (627)
Q Consensus 222 ~i~~~L~~l~~~~g~Tii~~tH~~~------------------~~i~~~~D~i~vL~~G~ 263 (627)
++++.|++++++.|.|||+++|... ..+.+.+|.++.|++++
T Consensus 305 ~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 305 KFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 7889999999888999999999821 12466778888887653
No 129
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.95 E-value=3.2e-10 Score=123.75 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=47.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~ 139 (627)
.+|+|+||++++ |+++|+|||||||||||++|+|+++|+. |+|.++|+++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDL---TLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCT---TTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEEcc
Confidence 479999999999 9999999999999999999999999864 99999998863
No 130
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.94 E-value=8.5e-12 Score=134.56 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=80.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC------hhhhcccEEEEc-----
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK------PAQLRKICGFVA----- 152 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~------~~~~r~~ig~v~----- 152 (627)
..+|+++ +. ++|++++|+|||||||||||++|+|++++.. |+|.+.+.++.. ...+++.+|+.+
T Consensus 156 ~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~---g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSE---RNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTT---SCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 3478888 53 8999999999999999999999999998753 999998877521 112344566655
Q ss_pred ----cCCCC--CCC----CCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHcCCccc--cCCcCCccccC
Q 006897 153 ----QEDNL--LPL----LTVKETLMFSANFRL--KGMSHKEKEDRVESLMDELGLTHV--AGSFVGDEENR 210 (627)
Q Consensus 153 ----Q~~~l--~~~----lTV~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~--~~~~~gGe~qr 210 (627)
|++.. +.. .|+.+++.++..-+. .........+ +.+.|..+|+++. ...++||++||
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~~~~~LSgg~~QR 301 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFLISSSLLGVLAQR 301 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHHHHHHEEEEEEEE
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 88765 333 589999887642110 0001111122 3335677888653 34566999998
No 131
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.93 E-value=6.7e-10 Score=129.68 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=89.4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCH----------HHHHHHHHHHHHHcCCccc-----cCCcCCccccC-----------
Q 006897 157 LLPLLTVKETLMFSANFRLKGMSH----------KEKEDRVESLMDELGLTHV-----AGSFVGDEENR----------- 210 (627)
Q Consensus 157 l~~~lTV~e~l~~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr----------- 210 (627)
.+..+||.|++.|...+ +.+. ++..+++ +.|+.+||+.. ..+++|||+||
T Consensus 465 q~~~ltV~e~l~f~enl---~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 465 EVCELSIADCADFLNAL---TLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp CSSHHHHHHHHHTTTTT---TSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HHhhCCHHHHHHHHHhc---CCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 34568999999984322 2333 3445565 45788898754 34667999998
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHHH
Q 006897 211 ---------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLEE 275 (627)
Q Consensus 211 ---------PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 275 (627)
||+|||+.....+++.|+++++ .|.|||+|+||++ . .+.||+|++| ++|++++.|+++++.+
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~-~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLIVVEHDED-T-IEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHH-H-HHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEEEECCCHH-H-HHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 9999999999999999999975 6999999999997 3 5689999999 6899999999988754
No 132
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.93 E-value=7e-13 Score=138.44 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=87.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC--------CCCCCccceEEECCccCCCh-----------------hhhcccEEEE-
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV--------RDQDFDPRSITVNCHQIKKP-----------------AQLRKICGFV- 151 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~--------~~~~~~~G~i~i~g~~~~~~-----------------~~~r~~ig~v- 151 (627)
++++|+|+||||||||+|.|.|.. .++ .|+|.++|.++... .++++.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 343 49999999875321 2345667877
Q ss_pred --ccCCCCCCCCCHHHHHHHHH--Hh--cCCCCCHHHHHHHHHHHHHHcCCccccC---CcCCccccCCC------CCCC
Q 006897 152 --AQEDNLLPLLTVKETLMFSA--NF--RLKGMSHKEKEDRVESLMDELGLTHVAG---SFVGDEENRGI------SGLD 216 (627)
Q Consensus 152 --~Q~~~l~~~lTV~e~l~~~~--~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~---~~~gGe~qrPt------sgLD 216 (627)
+|+..+++..++.||..++. .+ .....+......+++.++..+++.+..+ .+++|++||-. +..|
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTT
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcc
Confidence 68776666778888776431 00 0000000000111222233334433222 23578888811 2223
Q ss_pred HHHH-HHHHHHHHHHHHcCCCEEEEEccCcc
Q 006897 217 STSA-LQVIELLASMAKAKQRTVVLSIHQPS 246 (627)
Q Consensus 217 ~~~~-~~i~~~L~~l~~~~g~Tii~~tH~~~ 246 (627)
.... .++.+.|++++ .+.||++++|++.
T Consensus 162 l~de~~~l~~~l~~l~--~~~~ii~~sh~~~ 190 (318)
T 1nij_A 162 VAGEAEKLHERLARIN--ARAPVYTVTHGDI 190 (318)
T ss_dssp TCSCTHHHHHHHHHHC--SSSCEEECCSSCC
T ss_pred cCCHHHHHHHHHHHhC--CCCeEEEecccCC
Confidence 2222 78888998874 4789999999765
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.92 E-value=2.2e-11 Score=122.01 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=55.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHH
Q 006897 96 DSEILAVVGPSGTGKSSLLRIIS---GRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA 171 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~---Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~ 171 (627)
++++++|+||||||||||+++|+ |+..++ .|++.++|.+.. ......+++++|+..+++..++.+++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l 99 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAS--TEVGEMAKQYIEKSLLVPDHVITRLMMSEL 99 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTT--CHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcC--ChHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999 998774 388877765421 223344566778877888889999998754
No 134
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.91 E-value=2.6e-10 Score=132.26 Aligned_cols=158 Identities=12% Similarity=0.147 Sum_probs=106.3
Q ss_pred CCCCcHHHHHHHHHcCCCCC------CCccceEEECCccCCCh--hhhcccEEEEccC---CCCCC----CCCH-HHHHH
Q 006897 105 PSGTGKSSLLRIISGRVRDQ------DFDPRSITVNCHQIKKP--AQLRKICGFVAQE---DNLLP----LLTV-KETLM 168 (627)
Q Consensus 105 pnGsGKSTLl~~L~Gl~~~~------~~~~G~i~i~g~~~~~~--~~~r~~ig~v~Q~---~~l~~----~lTV-~e~l~ 168 (627)
.+..||++|.+.+....-|. ....|+|.++|+++.+. ..+.+.++++.|. ..... .++- ...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 349 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRPEQAIAL 349 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCSSHHHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcchhhHHHH
Confidence 35568999999986532221 01248899999886321 1122223333332 11000 0111 11122
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-----cCCcCCccccC--------------------CCCCCCHHHHHHH
Q 006897 169 FSANFRLKGMSHKEKEDRVESLMDELGLTHV-----AGSFVGDEENR--------------------GISGLDSTSALQV 223 (627)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----~~~~~gGe~qr--------------------PtsgLD~~~~~~i 223 (627)
+. + .++..++++ .|+.+||+.. ..+++|||+|| ||+|||+.....+
T Consensus 350 ~~--i------~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L 420 (842)
T 2vf7_A 350 QR--M------AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEAL 420 (842)
T ss_dssp HH--H------HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHH
T ss_pred HH--H------HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHH
Confidence 11 1 245667776 6889999754 34567999998 9999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee------cCCeEEeeCCHHHHH
Q 006897 224 IELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL------SRGSVVHYGSLELLE 274 (627)
Q Consensus 224 ~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 274 (627)
+++|+++++ .|.|||+|+||++ +.+.||+|++| ++|++++.|+++++.
T Consensus 421 ~~~l~~L~~-~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 421 LSALENLKR-GGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp HHHHHHHHT-TTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HHHHHHHHH-cCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999999965 6999999999997 45689999999 799999999988764
No 135
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.91 E-value=9e-12 Score=130.87 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=102.2
Q ss_pred cceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCCC-CCccceEEECCccCCC-hhhh-cccEEEEcc
Q 006897 84 LHILKSVSFEARDS-------EILAVVGPSGTGKSSLLRIISGRVRDQ-DFDPRSITVNCHQIKK-PAQL-RKICGFVAQ 153 (627)
Q Consensus 84 ~~iL~~vsl~i~~G-------e~~aIiGpnGsGKSTLl~~L~Gl~~~~-~~~~G~i~i~g~~~~~-~~~~-r~~ig~v~Q 153 (627)
..+++++++.+++| +.++|.||||+|||||+++|+|.+... ....|.+..++.++.. .... ++.|.+++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 45899999999887 899999999999999999999987321 0122555444443211 0112 457999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHcCCcc---ccCCcCCccccCC--CCCCCHHHHHHHHHH
Q 006897 154 EDNLLPLLTVKETLMFSANFRLKGM--SHKEKEDRVESLMDELGLTH---VAGSFVGDEENRG--ISGLDSTSALQVIEL 226 (627)
Q Consensus 154 ~~~l~~~lTV~e~l~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~---~~~~~~gGe~qrP--tsgLD~~~~~~i~~~ 226 (627)
.+.+.+ ++.|++........... ......+.+...++.++|.. ..+.+++|+++|- ..+||+.+..++.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~i 188 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEI 188 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHH
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHH
Confidence 877765 78888854432211000 01222344555555555532 2345568899983 478999999999999
Q ss_pred HHHHHHcCCCEEEEEccCccHHHHHHhhh
Q 006897 227 LASMAKAKQRTVVLSIHQPSYRILQYISK 255 (627)
Q Consensus 227 L~~l~~~~g~Tii~~tH~~~~~i~~~~D~ 255 (627)
|++.++..+ ++|+.+ .+..++++
T Consensus 189 L~~~~~~~~-----~~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 189 IKRAASLMD-----VEIEDA-AAEMIAKR 211 (334)
T ss_dssp HHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred HHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence 999887655 367765 35556654
No 136
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.88 E-value=9.5e-11 Score=113.43 Aligned_cols=70 Identities=14% Similarity=0.296 Sum_probs=47.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCCCCCCCCCHHHHH
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETL 167 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l 167 (627)
|+++++|++++|+||||||||||+++|+|+.+ .+.+.+..... ....+..++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 57788999999999999999999999999863 24455544321 122356789999987666655555444
No 137
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.87 E-value=1.5e-09 Score=105.96 Aligned_cols=157 Identities=18% Similarity=0.117 Sum_probs=86.9
Q ss_pred ceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 85 HILKSVSF-EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 85 ~iL~~vsl-~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
+.||++.. .+++|++++|+||||||||||++.|++ .+. .+.+.++..+-.....+++. .+.. .+..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~---~~v~~i~~~~~~~~~~~~~~----~~~~----~~~~ 73 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG---KKVAYVDTEGGFSPERLVQM----AETR----GLNP 73 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC---SEEEEEESSCCCCHHHHHHH----HHTT----TCCH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC---CcEEEEECCCCCCHHHHHHH----HHhc----CCCh
Confidence 46788774 899999999999999999999999999 322 25556655431122222211 1111 1111
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHH--------HHHHHHHHHHHHHHcC
Q 006897 164 KETLMFSANFRLKGM-SHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDST--------SALQVIELLASMAKAK 234 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~--------~~~~i~~~L~~l~~~~ 234 (627)
.+.+. .+..... ...+..+.+..+...+. +-.+-.+=.+ |++.+|+. ...++++.|++++++.
T Consensus 74 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~lliiD~---~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~ 145 (220)
T 2cvh_A 74 EEALS---RFILFTPSDFKEQRRVIGSLKKTVD--SNFALVVVDS---ITAHYRAEENRSGLIAELSRQLQVLLWIARKH 145 (220)
T ss_dssp HHHHH---HEEEECCTTTSHHHHHHHHHHHHCC--TTEEEEEEEC---CCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh---cEEEEecCCHHHHHHHHHHHHHHhh--cCCCEEEEcC---cHHHhhhcCchHHHHHHHHHHHHHHHHHHHHc
Confidence 11110 1111111 11122222332222221 0000011111 66777753 3355777788888877
Q ss_pred CCEEEEEccCccH------------HHHHHhhhheeecCC
Q 006897 235 QRTVVLSIHQPSY------------RILQYISKFLILSRG 262 (627)
Q Consensus 235 g~Tii~~tH~~~~------------~i~~~~D~i~vL~~G 262 (627)
|.|||+++|.... .+.+.||++++|++.
T Consensus 146 ~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 146 NIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9999999997651 367889999999764
No 138
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.78 E-value=8.9e-11 Score=125.31 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=102.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC----C-----CCCccceEEECCccCCChh---hhcccE---EEEccCCCC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVR----D-----QDFDPRSITVNCHQIKKPA---QLRKIC---GFVAQEDNL 157 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~----~-----~~~~~G~i~i~g~~~~~~~---~~r~~i---g~v~Q~~~l 157 (627)
.+++|+.++|+|+||||||||+|+|+|... + .....|.+.++|..+.... .-++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999321 0 0123599999875421111 112223 467788888
Q ss_pred CCCCCHHHHH--HHHHHhcCCCCCHHHHHHHHHHHHHHcCCccccC--CcCCccc--------cCCCCCCCHHHHHHHHH
Q 006897 158 LPLLTVKETL--MFSANFRLKGMSHKEKEDRVESLMDELGLTHVAG--SFVGDEE--------NRGISGLDSTSALQVIE 225 (627)
Q Consensus 158 ~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~~gGe~--------qrPtsgLD~~~~~~i~~ 225 (627)
.+..+..|++ .|...++. ++.++..++..+..+ ...|+.. ..|+.++|+....+.++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~-----------~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~ 164 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA-----------VDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLE 164 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT-----------CSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH-----------HHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHH
Confidence 8877876665 44332221 111111111111000 0112111 11677888888888888
Q ss_pred HHHHH-HHcCCCEEEEEccCccHHHHHHhhhhe-eecCC-eEEeeCCH
Q 006897 226 LLASM-AKAKQRTVVLSIHQPSYRILQYISKFL-ILSRG-SVVHYGSL 270 (627)
Q Consensus 226 ~L~~l-~~~~g~Tii~~tH~~~~~i~~~~D~i~-vL~~G-~iv~~G~~ 270 (627)
.++++ .+ .|.|++ +|+.. ++.++||++. +|++| ++++.|+.
T Consensus 165 ~l~~~~~~-~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 165 GLRKITSR-GANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHTTCC-SSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHh-cCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCC
Confidence 88887 54 477764 99988 5899999999 99999 98887764
No 139
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.78 E-value=2.9e-10 Score=112.55 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=42.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC----------hhhhcccEEEEccC
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK----------PAQLRKICGFVAQE 154 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~----------~~~~r~~ig~v~Q~ 154 (627)
++++++ ++++|+|||||||||||++|+|++.|+. |+|.++|.++.. ....++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDL---TLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCT---TTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCC---CeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 466666 8999999999999999999999999864 999999987521 11245679999985
No 140
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.72 E-value=3.2e-09 Score=100.74 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=66.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHH
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFS 170 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~ 170 (627)
++++++|+.++|.||||+|||||+++|++.+.+.. |. . +.| +++.+.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~---g~------~----------~~~----------~~~~~~~~~~ 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK---GI------R----------GYF----------FDTKDLIFRL 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS---CC------C----------CCE----------EEHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc---CC------e----------EEE----------EEHHHHHHHH
Confidence 45677899999999999999999999999875422 21 0 001 1233333221
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCC-CCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccH
Q 006897 171 ANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGI-SGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSY 247 (627)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPt-sgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~ 247 (627)
......+.. . +.++.+.= .+-++-.| |. .++|+..+..+.+++.+..+ .|+++|++||.+..
T Consensus 83 ~~~~~~~~~-~-------~~~~~~~~---~~llilDE---~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 83 KHLMDEGKD-T-------KFLKTVLN---SPVLVLDD---LGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHTCC-S-------HHHHHHHT---CSEEEEET---CSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSC
T ss_pred HHHhcCchH-H-------HHHHHhcC---CCEEEEeC---CCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChh
Confidence 100000000 0 11121110 01111111 44 48999999999999988764 58999999998753
No 141
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=1.1e-08 Score=107.46 Aligned_cols=139 Identities=13% Similarity=0.096 Sum_probs=70.0
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 006897 100 LAVVGPSGTGKSSLLRIISG-RVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGM 178 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~G-l~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 178 (627)
+.|.||||+|||||+++|+| +..+.. |.+.++|.+...+...+..+++++|.+.+.-..+ +. + ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~---g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~------~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGV---YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--DM---G------NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTC---CC------------------CCEECSSEEEECCC---------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCC---CeEEecceeecccccccceeeeecccceEEecHh--hc---C------Cc
Confidence 89999999999999999999 666643 9999988775333333567889998765421111 00 0 00
Q ss_pred CHHHHHHHHHHHHHHcCCccccCCcCC--cccc-----CCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHH
Q 006897 179 SHKEKEDRVESLMDELGLTHVAGSFVG--DEEN-----RGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQ 251 (627)
Q Consensus 179 ~~~~~~~~v~~~l~~lgL~~~~~~~~g--Ge~q-----rPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~ 251 (627)
.....++.++++.+..++.+.. .++| +..+ .|++ ||+.++..+.+.+.+.. .+.++|++||+++.....
T Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~-~ls~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~ 180 (354)
T 1sxj_E 105 DRIVIQELLKEVAQMEQVDFQD-SKDGLAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAP 180 (354)
T ss_dssp CHHHHHHHHHHHTTTTC-------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHH
T ss_pred chHHHHHHHHHHHHhccccccc-cccccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHH
Confidence 1112223333333322332211 1112 1111 1666 99999999999998863 368999999998642233
Q ss_pred Hhhhh
Q 006897 252 YISKF 256 (627)
Q Consensus 252 ~~D~i 256 (627)
+.+|.
T Consensus 181 l~sR~ 185 (354)
T 1sxj_E 181 IKSQC 185 (354)
T ss_dssp HHTTS
T ss_pred HHhhc
Confidence 34444
No 142
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.68 E-value=7.5e-10 Score=110.02 Aligned_cols=166 Identities=11% Similarity=0.101 Sum_probs=88.0
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHH-HcCCCCCCCccceEEECCccCCChhhh---cccEEEEccCCCCCC
Q 006897 85 HILKSV-SFEARDSEILAVVGPSGTGKSSLLRII-SGRVRDQDFDPRSITVNCHQIKKPAQL---RKICGFVAQEDNLLP 159 (627)
Q Consensus 85 ~iL~~v-sl~i~~Ge~~aIiGpnGsGKSTLl~~L-~Gl~~~~~~~~G~i~i~g~~~~~~~~~---r~~ig~v~Q~~~l~~ 159 (627)
+.||++ ..-+++|++++|.||||||||||+..+ .+..+.. .+.+.+.+.. . ..++ .+.+|+.+|+.....
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~---~~v~~~~~e~-~-~~~~~~~~~~~g~~~~~~~~~~ 84 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG---EPGIYVALEE-H-PVQVRQNMAQFGWDVKPYEEKG 84 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEESSS-C-HHHHHHHHHTTTCCCHHHHHHT
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEccC-C-HHHHHHHHHHcCCCHHHHhhCC
Confidence 457777 778999999999999999999995544 4444332 1455555543 2 1111 123455444211000
Q ss_pred CCCHHHH--HHHH--HHhc---C-CCCCHHHHHHHHHHHHHHcCCcccc-CCcCCccccCCCCCCCHHHHHHHHHHHHHH
Q 006897 160 LLTVKET--LMFS--ANFR---L-KGMSHKEKEDRVESLMDELGLTHVA-GSFVGDEENRGISGLDSTSALQVIELLASM 230 (627)
Q Consensus 160 ~lTV~e~--l~~~--~~~~---~-~~~~~~~~~~~v~~~l~~lgL~~~~-~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l 230 (627)
.+++.|. ..+. .... . ......+..+++.+.++..+.+-+. |.+... .+=|+....+.+..|.++
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l------~~~~~~~~~~~l~~l~~~ 158 (247)
T 2dr3_A 85 MFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTL------YINKPAMARSIILQLKRV 158 (247)
T ss_dssp SEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGG------TTTCGGGHHHHHHHHHHH
T ss_pred cEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHh------hcCCHHHHHHHHHHHHHH
Confidence 1111110 0000 0000 0 0012233455666677666654221 221100 011444456666777777
Q ss_pred HHcCCCEEEEEccCccHH-------HHHHhhhheeecC
Q 006897 231 AKAKQRTVVLSIHQPSYR-------ILQYISKFLILSR 261 (627)
Q Consensus 231 ~~~~g~Tii~~tH~~~~~-------i~~~~D~i~vL~~ 261 (627)
+++.|.|||+++|..... +.+.||.++.|+.
T Consensus 159 ~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 159 LAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 777899999999976521 4678899999864
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.68 E-value=2.4e-10 Score=116.62 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=62.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCC-CCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQED-NLLPL 160 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~-~l~~~ 160 (627)
..+++++++++++| ++|+||||||||||+|+|+|...+ |.+.++|.++.. ..+.++.+++++|+. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45899999999999 999999999999999999998764 789999987643 123445678888874 45566
Q ss_pred CCHHHHHHH
Q 006897 161 LTVKETLMF 169 (627)
Q Consensus 161 lTV~e~l~~ 169 (627)
+++.|++..
T Consensus 106 i~~~Deid~ 114 (274)
T 2x8a_A 106 VIFFDEVDA 114 (274)
T ss_dssp EEEEETCTT
T ss_pred eEeeehhhh
Confidence 677777754
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.63 E-value=2.1e-08 Score=92.57 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=35.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc--eEEECCcc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR--SITVNCHQ 137 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G--~i~i~g~~ 137 (627)
.+|+++ +|+.++|+||||+|||||+++|+|...+. | .+.+++.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----g~~~~~~~~~~ 74 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA----GKNAAYIDAAS 74 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT----TCCEEEEETTT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEcHHH
Confidence 467777 89999999999999999999999988652 5 56665544
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.62 E-value=3.2e-10 Score=122.05 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=33.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++++++++.|+.++|+|+|||||||||++|+|..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 48999999999999999999999999999999974
No 146
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.62 E-value=2.4e-09 Score=103.62 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=46.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhh-cccEEEEccCCCCCCCCCHH
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQL-RKICGFVAQEDNLLPLLTVK 164 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~-r~~ig~v~Q~~~l~~~lTV~ 164 (627)
+..+-.++.++|++++|+||||||||||+++|+|.+ |.+.+++.++...... +...|+++|+....+.+++.
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 90 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSL 90 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHH
Confidence 333444667899999999999999999999999875 7888988775432222 23467777764433333333
Q ss_pred HHH
Q 006897 165 ETL 167 (627)
Q Consensus 165 e~l 167 (627)
+++
T Consensus 91 ~~~ 93 (200)
T 4eun_A 91 AEW 93 (200)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 147
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.59 E-value=1.2e-08 Score=100.86 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=22.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS-GRVR 122 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~-Gl~~ 122 (627)
+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999999 9974
No 148
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.58 E-value=3.8e-09 Score=100.27 Aligned_cols=137 Identities=10% Similarity=0.163 Sum_probs=77.8
Q ss_pred ee--eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc--cC-CC-----hhhhcccEEEEccCC
Q 006897 86 IL--KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH--QI-KK-----PAQLRKICGFVAQED 155 (627)
Q Consensus 86 iL--~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~--~~-~~-----~~~~r~~ig~v~Q~~ 155 (627)
.+ +++++++.+| +++|+||||||||||+++|.+++.+.. |...-.+. ++ .. ....+..|..++|++
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLS---AKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCC---TGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCc---ccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 46 7899999999 999999999999999999999876542 22111110 11 00 012345688999975
Q ss_pred CC-C-C---CCCHHHHHHHH--HHhcCCCCCHHHHHHHHHHHHHHcCCcccc-CCcCCccccCCCCCCCHHHHHHHHHHH
Q 006897 156 NL-L-P---LLTVKETLMFS--ANFRLKGMSHKEKEDRVESLMDELGLTHVA-GSFVGDEENRGISGLDSTSALQVIELL 227 (627)
Q Consensus 156 ~l-~-~---~lTV~e~l~~~--~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~~gGe~qrPtsgLD~~~~~~i~~~L 227 (627)
.- + + .++|...+.-. ..++..+ .....+++.++++.++++... +-...|+.++ +.-++|..+.++++.+
T Consensus 90 ~~~~~~~~~~~~i~r~~~~~~~~~~~i~g--~~~~~~~~~~~l~~~~l~~~~~~~~~qg~~~~-l~~~~~~~r~~~ld~~ 166 (182)
T 3kta_A 90 DRGFPIDEDEVVIRRRVYPDGRSSYWLNG--RRATRSEILDILTAAMISPDGYNIVLQGDITK-FIKMSPLERRLLIDDI 166 (182)
T ss_dssp TCCSSSSSSEEEEEEEECTTSCEEEEETT--EEECHHHHHHHHHHTTCCTTCTTEECTTCTTH-HHHSCHHHHHHHHHHH
T ss_pred CcccccCCcEEEEEEEEEeCCcEEEEECC--eEcCHHHHHHHHHHcCCCCCCCEEEEcccHHH-HHhCCHHHHHHHHHHH
Confidence 31 1 1 12322211000 0001111 112346688899999986532 2223454432 3346788888877766
Q ss_pred HH
Q 006897 228 AS 229 (627)
Q Consensus 228 ~~ 229 (627)
-.
T Consensus 167 ~g 168 (182)
T 3kta_A 167 SG 168 (182)
T ss_dssp HT
T ss_pred HC
Confidence 43
No 149
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.48 E-value=6.3e-09 Score=106.03 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=61.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCCC-CCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDN-LLPL 160 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~~-l~~~ 160 (627)
..+++++++++++| ++|+||||+|||||+++|++... .|.+.+++.++.. ....++.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 35799999999999 89999999999999999999875 2889998876421 1223445778888753 5667
Q ss_pred CCHHHHHHH
Q 006897 161 LTVKETLMF 169 (627)
Q Consensus 161 lTV~e~l~~ 169 (627)
+++.|++..
T Consensus 135 i~~iDeid~ 143 (278)
T 1iy2_A 135 IVFIDEIDA 143 (278)
T ss_dssp EEEEETHHH
T ss_pred EEehhhhHh
Confidence 788888854
No 150
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.47 E-value=6.9e-09 Score=104.09 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=68.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCC-CCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQED-NLLPL 160 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~-~l~~~ 160 (627)
..+++++++++++| ++|+||||+|||||+++|++... .|.+.+++.++.. ....++.+++++|+. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 35799999999999 99999999999999999999874 2889998866421 122344577788874 35567
Q ss_pred CCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHc
Q 006897 161 LTVKETLMFSANFRLKG--MSHKEKEDRVESLMDEL 194 (627)
Q Consensus 161 lTV~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~l 194 (627)
+++.|++......+... ...++..+.+.+++..+
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 146 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 146 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHH
Confidence 78888884332111100 01233445566666554
No 151
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.46 E-value=9.2e-09 Score=97.26 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=43.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC-----hhhhc-ccEE----EEccCCCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK-----PAQLR-KICG----FVAQEDNLL 158 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~-----~~~~r-~~ig----~v~Q~~~l~ 158 (627)
++++|+|+||||||||+++|+|++++.+...|.|.++|.++.+ ...+| +.+| +++|+..+|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 5899999999999999999999998863345999999987532 23455 3566 889987655
No 152
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.44 E-value=2.6e-07 Score=97.25 Aligned_cols=153 Identities=13% Similarity=0.128 Sum_probs=92.8
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE-EECCccCCChhhhcccEEEEccCCCCCCCCC
Q 006897 86 ILKSVS--FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI-TVNCHQIKKPAQLRKICGFVAQEDNLLPLLT 162 (627)
Q Consensus 86 iL~~vs--l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i-~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lT 162 (627)
-||.+- .-+++|+++.|.||+|||||||+..+++...+.+ |.+ ++++....+ ....+++|+.+|+..+....+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~~-~~ra~rlgv~~~~l~i~~~~~ 123 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHALD-PVYAKNLGVDLKSLLISQPDH 123 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCC-HHHHHHHTCCGGGCEEECCSS
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEecccccc-hHHHHHcCCchhhhhhhhccC
Confidence 455543 3689999999999999999999999998765432 544 666665322 234456787777755554557
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCC-----ccccCCc-----CC--ccccCCCCCCCHHHHHHHHHHHHHH
Q 006897 163 VKETLMFSANFRLKGMSHKEKEDRVESLMDELGL-----THVAGSF-----VG--DEENRGISGLDSTSALQVIELLASM 230 (627)
Q Consensus 163 V~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----~~~~~~~-----~g--Ge~qrPtsgLD~~~~~~i~~~L~~l 230 (627)
+.+.+.... .+++..+. +...... .| |++|+ ++-.....++++.|+++
T Consensus 124 ~e~~l~~~~-----------------~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~---~~qar~la~~L~~L~~l 183 (356)
T 3hr8_A 124 GEQALEIVD-----------------ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQV---GLQARLMSQALRKIAGS 183 (356)
T ss_dssp HHHHHHHHH-----------------HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCS---SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------HHhhhcCCCeEEehHhhhhcChhhhcccchhhHH---HHHHHHHHHHHHHHHHH
Confidence 766654422 11111111 1111111 11 33332 12223344677778888
Q ss_pred HHcCCCEEEEEccCc---------------cHHHHHHhhhheeecCC
Q 006897 231 AKAKQRTVVLSIHQP---------------SYRILQYISKFLILSRG 262 (627)
Q Consensus 231 ~~~~g~Tii~~tH~~---------------~~~i~~~~D~i~vL~~G 262 (627)
+++.|.|||++.|-. ...+..++|-++.+..+
T Consensus 184 ak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~ 230 (356)
T 3hr8_A 184 VNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRG 230 (356)
T ss_dssp HHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred HHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEec
Confidence 888899999998851 11145678888888753
No 153
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.44 E-value=1.4e-08 Score=102.05 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=35.8
Q ss_pred eEEEEeE-EEEEccCcccccccccCCccccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 56 KVTVRNL-SYAIQPNTSILSHLLHEPKVPLHILKSVSFEARD---SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 56 ~l~~~nl-s~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~---Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|+++|+ +++|. +..++|+|+||++++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~--------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD--------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec--------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6999999 99982 134699999999999 9999999999999999999999865
No 154
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.44 E-value=4.4e-08 Score=95.30 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=33.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.++|++++|+||||||||||+++|+|++++.+...|.|.++|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 57999999999999999999999999987531112555555443
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.42 E-value=2e-07 Score=95.89 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=80.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~~~ 174 (627)
++|++++++||||+||||+++.|++.+.+.. | +++.++.+|.. ..+..|++...+...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G----------------~~V~lv~~D~~---r~~a~eqL~~~~~~~ 160 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK---H----------------KKIAFITTDTY---RIAAVEQLKTYAELL 160 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT---C----------------CCEEEEECCCS---STTHHHHHHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---C----------------CEEEEEecCcc---cchHHHHHHHHHHhc
Confidence 5799999999999999999999999886532 4 13555555542 246677776643211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHH--HcCCCEEEE-EccCccHHHHH
Q 006897 175 LKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMA--KAKQRTVVL-SIHQPSYRILQ 251 (627)
Q Consensus 175 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~--~~~g~Tii~-~tH~~~~~i~~ 251 (627)
.-..........+...+..+ .+ .+-.+- -|+|+|+.....+.++.+-+. ...+.++++ ++|+.+ ++.+
T Consensus 161 gl~~~~~~~~~~l~~al~~~--~~-~dlvIi-----DT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~ 231 (296)
T 2px0_A 161 QAPLEVCYTKEEFQQAKELF--SE-YDHVFV-----DTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKH 231 (296)
T ss_dssp TCCCCBCSSHHHHHHHHHHG--GG-SSEEEE-----ECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHH
T ss_pred CCCeEecCCHHHHHHHHHHh--cC-CCEEEE-----eCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHH
Confidence 00000000012233344432 11 111111 267888765544444333221 112334444 489876 5888
Q ss_pred HhhhheeecCCeEEee
Q 006897 252 YISKFLILSRGSVVHY 267 (627)
Q Consensus 252 ~~D~i~vL~~G~iv~~ 267 (627)
.++++..+..+.++..
T Consensus 232 ~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 232 IVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HTTTTSSSCCCEEEEE
T ss_pred HHHHHhcCCCCEEEEe
Confidence 9999888888888764
No 156
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.38 E-value=1e-07 Score=97.82 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=63.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCHHHHHHHHHH--
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSAN-- 172 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l~~~~~-- 172 (627)
+++.+++|.||||||||||.+.|++++.+. | . . ++.+.+|+||+.+++. ++++|+.++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~ 90 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNN 90 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C------C-CceEEEeccccccCCh-HHHHHHhcccccc
Confidence 478999999999999999999999987642 2 0 1 3446677999988875 89999987621
Q ss_pred --hcCCCCCHHHHHHHHHHHHHHcCCc------------cccCCcCCccccC
Q 006897 173 --FRLKGMSHKEKEDRVESLMDELGLT------------HVAGSFVGDEENR 210 (627)
Q Consensus 173 --~~~~~~~~~~~~~~v~~~l~~lgL~------------~~~~~~~gGe~qr 210 (627)
+...+.+.....+.+.+.++.+.-. ..-...+|||+||
T Consensus 91 ~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R 142 (290)
T 1odf_A 91 KLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDR 142 (290)
T ss_dssp GGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEE
T ss_pred chhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccc
Confidence 1111122222344566667766332 1122345888886
No 157
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.34 E-value=1.2e-07 Score=87.34 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee--cCCe
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL--SRGS 263 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL--~~G~ 263 (627)
||+|||+.++..+.+.|+++.++ |+|||++||+++ +.+.||++++| ++|.
T Consensus 90 Pt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~--~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 90 PTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE--LKDAADHVIRISLENGS 141 (148)
T ss_dssp CSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG--GGGGCSEEEEEEEETTE
T ss_pred CCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHH--HHHhCCEEEEEEcCCCe
Confidence 99999999999999999998654 899999999984 57899999999 4564
No 158
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.33 E-value=1.2e-07 Score=98.60 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=63.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCCh------hhh-----cccEEEE-ccC
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKP------AQL-----RKICGFV-AQE 154 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~------~~~-----r~~ig~v-~Q~ 154 (627)
+++++|++++|++++|+|+||+||||++..|++.+.+.+ |+|.+.+.+.... ..+ +..++++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 478999999999999999999999999999999987653 8899888775332 123 5679999 777
Q ss_pred CCCCCCCCHHHHHHHH
Q 006897 155 DNLLPLLTVKETLMFS 170 (627)
Q Consensus 155 ~~l~~~lTV~e~l~~~ 170 (627)
....|..++.+++...
T Consensus 172 ~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 172 LNADPASVVFDAIKKA 187 (320)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6556655677777654
No 159
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.32 E-value=1.3e-08 Score=98.34 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=42.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceE--EECCccC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSI--TVNCHQI 138 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i--~i~g~~~ 138 (627)
..+.++.++..++|++++|+||||||||||+++|++++. .. |.+ .++|.++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~---G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QK---GKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HT---TCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hc---CceEEEecCchh
Confidence 446778888889999999999999999999999999886 22 776 7887653
No 160
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.28 E-value=2e-07 Score=90.05 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 161
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.25 E-value=9.2e-08 Score=96.08 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=54.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCccceEE--------ECCccCCC---hhhhcccEEEE
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS---GRVRDQDFDPRSIT--------VNCHQIKK---PAQLRKICGFV 151 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~---Gl~~~~~~~~G~i~--------i~g~~~~~---~~~~r~~ig~v 151 (627)
++++.+ ++|++++|+|||||||||++++|+ |+..++ .|.+. .+|.++.+ ...+++.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 445544 789999999999999999999999 987764 48888 78877532 34577889999
Q ss_pred ccCCC-----CCCCCCHHHHH
Q 006897 152 AQEDN-----LLPLLTVKETL 167 (627)
Q Consensus 152 ~Q~~~-----l~~~lTV~e~l 167 (627)
+|.+. .....++.+++
T Consensus 93 ~~~~~~~~~~~l~~~~v~~~i 113 (252)
T 4e22_A 93 FVSQNGQLQVILEGEDVSNEI 113 (252)
T ss_dssp EEEETTEEEEEETTEECTTGG
T ss_pred EecCCCCceEEECCeehhHHH
Confidence 97532 23344555554
No 162
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.19 E-value=4.2e-07 Score=86.65 Aligned_cols=27 Identities=44% Similarity=0.694 Sum_probs=25.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999864
No 163
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=6.3e-07 Score=86.35 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=24.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 82 VPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 82 ~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+...+++||||++++|++++|+||+||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4456899999999999999999999999999999999765
No 164
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.18 E-value=1.2e-07 Score=89.26 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=32.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~ 139 (627)
.+|++++|+||||||||||++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcccc
Confidence 468999999999999999999999864 77788876643
No 165
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.11 E-value=1.3e-06 Score=84.16 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=27.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
+++++|++++|+||||||||||+++|++++.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 36789999999999999999999999999855
No 166
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.10 E-value=1.2e-06 Score=95.71 Aligned_cols=173 Identities=15% Similarity=0.162 Sum_probs=95.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc-eEEECCccCCChhhhccc-----EEEEccCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR-SITVNCHQIKKPAQLRKI-----CGFVAQEDNL 157 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G-~i~i~g~~~~~~~~~r~~-----ig~v~Q~~~l 157 (627)
...|+++..-+++|+++.|.|++|+|||||+..+++...+.. | .+.+.+.+. +..++.++ .++-.+.- .
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~~s~E~-s~~~l~~r~~~~~~~~~~~~l-~ 264 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAIFSLEM-SAQQLVMRMLCAEGNINAQNL-R 264 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEEEESSS-CHHHHHHHHHHHHHTCCHHHH-H
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEEECCC-CHHHHHHHHHHHHcCCCHHHH-h
Confidence 357899998899999999999999999999999988664321 3 455544332 22222211 12222210 0
Q ss_pred CCCCCHHHHHHH--HH-Hhc-----C---CCCCHHHHHHHHHHHHHHcCCccc-cCCcC---CccccCCCCCCCHHHHHH
Q 006897 158 LPLLTVKETLMF--SA-NFR-----L---KGMSHKEKEDRVESLMDELGLTHV-AGSFV---GDEENRGISGLDSTSALQ 222 (627)
Q Consensus 158 ~~~lTV~e~l~~--~~-~~~-----~---~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~---gGe~qrPtsgLD~~~~~~ 222 (627)
...++-.|--.+ +. .+. . ...+..+...++.++....+.+-+ .|.+. ++.. -+.-+.....+
T Consensus 265 ~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~---~~~~~~~~i~~ 341 (454)
T 2r6a_A 265 TGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGR---SKENRQQEVSE 341 (454)
T ss_dssp TSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC-------CHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCC---CCCCHHHHHHH
Confidence 112332221111 10 000 0 012333444444444433333211 12111 1110 01124566688
Q ss_pred HHHHHHHHHHcCCCEEEEEcc---------C--ccH-------HHHHHhhhheeecCCeE
Q 006897 223 VIELLASMAKAKQRTVVLSIH---------Q--PSY-------RILQYISKFLILSRGSV 264 (627)
Q Consensus 223 i~~~L~~l~~~~g~Tii~~tH---------~--~~~-------~i~~~~D~i~vL~~G~i 264 (627)
+.+.|+.++++.|.+||+++| + |.. .+...||.|++|++++.
T Consensus 342 i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 342 ISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 999999999888999999999 2 420 26788999999987764
No 167
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.06 E-value=2.1e-06 Score=90.29 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=44.6
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 86 ILKSVS--FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 86 iL~~vs--l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
-||.+- .-+++|+++.|.||+|+|||||+..++......+ ...++++.....+ ....+.+|+.+|+..+....++
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~-~~~a~~lG~~~~~l~i~~~~~~ 124 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALD-PEYAKKLGVDTDSLLVSQPDTG 124 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCC-HHHHHHTTCCGGGCEEECCSSH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcC-HHHHHHcCCCHHHeEEecCCCH
Confidence 355543 3689999999999999999999888875443221 1234454443112 2223334544444333333355
Q ss_pred HHHH
Q 006897 164 KETL 167 (627)
Q Consensus 164 ~e~l 167 (627)
.+.+
T Consensus 125 e~~l 128 (349)
T 2zr9_A 125 EQAL 128 (349)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 168
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.01 E-value=2.2e-06 Score=81.24 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=26.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+|++++|+||||||||||+++|++..++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 36899999999999999999999998753
No 169
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.97 E-value=1.9e-06 Score=94.60 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=35.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCccceEEECCcc
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISG--RVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G--l~~~~~~~~G~i~i~g~~ 137 (627)
.+++++.++..++|.|++||||||+++.|.. +.+.. .|++.+.+.|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liD 206 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMID 206 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEEC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEEC
Confidence 4788889999999999999999999999875 33322 2667665555
No 170
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.95 E-value=3.1e-06 Score=83.50 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=34.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.+.++|++++|.|+||||||||+++|+|+ . |+|.+.+++
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~---g~v~~~~~~ 53 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----K---NDICLLTEP 53 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----T---TTEEEECCT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----c---CCeEEEecC
Confidence 34578999999999999999999999997 2 888888876
No 171
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.87 E-value=6.4e-06 Score=79.93 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=27.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999865
No 172
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.84 E-value=4.1e-06 Score=80.78 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=35.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
..++|++++|+|+||||||||++.|++.+++.+ |.+.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~---~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQG---ISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC---CeEEEeccC
Confidence 357899999999999999999999999886643 777776655
No 173
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.80 E-value=2.7e-06 Score=90.25 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=35.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..+|+++|+.+++|++++|+||||||||||+++|+|..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35899999999999999999999999999999999864
No 174
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.77 E-value=2.2e-06 Score=88.91 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=35.4
Q ss_pred ccceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 83 PLHILKSVSFEARDSE------ILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge------~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+..|++++..+.+++ ++||+||||||||||+++|++++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3457888888888777 9999999999999999999998763
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.77 E-value=9.4e-06 Score=78.18 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+...+|++++|+||||||||||++.|++..+
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445899999999999999999999998765
No 176
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.72 E-value=1e-05 Score=87.55 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=28.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ 124 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~ 124 (627)
+++.+|++++|+|||||||||||++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 456789999999999999999999999987653
No 177
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.69 E-value=2e-05 Score=76.05 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=27.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
--++++|++++|+|++|||||||++.|++.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999999999875
No 178
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.67 E-value=3.6e-06 Score=82.31 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=41.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEE--------CCccCCC---hhhhcccEEEEccCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV--------NCHQIKK---PAQLRKICGFVAQED 155 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i--------~g~~~~~---~~~~r~~ig~v~Q~~ 155 (627)
+.+++|+|||||||||+.++|++.+.....+.|++.. +|.++.+ ...+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999865221123477765 5655322 134667789988864
No 179
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.67 E-value=9.4e-06 Score=91.75 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=55.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCC
Q 006897 83 PLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQED 155 (627)
Q Consensus 83 ~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~ 155 (627)
...+++++++.+++|+.++|+||||+|||||+++|+|++++.. .|.+.+++.+. ......++++|+..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~--~~~~~~~~~~~---~~~~p~i~~~p~g~ 113 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET--LEDILVFPNPE---DENMPRIKTVPACQ 113 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS--CEEEEEECCTT---CTTSCEEEEEETTH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc--CCeEEEeCCcc---cccCCcEEEEecch
Confidence 3568999999999999999999999999999999999998753 38888887663 23455688888753
No 180
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.65 E-value=8.7e-06 Score=90.60 Aligned_cols=43 Identities=28% Similarity=0.433 Sum_probs=36.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEE-ECCcc
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSIT-VNCHQ 137 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~-i~g~~ 137 (627)
.+++|++++|+|+||||||||+++|+|++.+.+ .|++. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~--G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG--GRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC--SSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC--CceEEEECCcH
Confidence 578999999999999999999999999998753 13675 77755
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.65 E-value=3e-06 Score=96.82 Aligned_cols=134 Identities=11% Similarity=0.092 Sum_probs=77.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCC--hhhhcccEEEEccCCCCCCCCCHHHHHH
Q 006897 91 SFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQLRKICGFVAQEDNLLPLLTVKETLM 168 (627)
Q Consensus 91 sl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~--~~~~r~~ig~v~Q~~~l~~~lTV~e~l~ 168 (627)
|+++++|+.++|+|++|+|||||++.|++...+.. ..|+| .+|..+.+ ..+.++.+++.+|...++.. ++..||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~-~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nli 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKE-RRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFLL 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSS-SCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCC-cccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEEE
Confidence 45678899999999999999999999997654422 23777 56655432 33455667777776554432 3333332
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHcCCccccCCcCCccccCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccH
Q 006897 169 FSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSFVGDEENRGISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSY 247 (627)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~gGe~qrPtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~ 247 (627)
- .++. .+....+...+...+..-+.- -++.|+|+.+. ++++.++ +.+..+|++.|.++.
T Consensus 80 D-----TpG~--~~f~~~~~~~l~~ad~~ilVv--------D~~~g~~~qt~-~~~~~~~----~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 80 D-----APGY--GDFVGEIRGALEAADAALVAV--------SAEAGVQVGTE-RAWTVAE----RLGLPRMVVVTKLDK 138 (665)
T ss_dssp E-----CCCS--GGGHHHHHHHHHHCSEEEEEE--------ETTTCSCHHHH-HHHHHHH----HTTCCEEEEEECGGG
T ss_pred e-----CCCc--cchHHHHHHHHhhcCcEEEEE--------cCCcccchhHH-HHHHHHH----HccCCEEEEecCCch
Confidence 1 1121 122234555555444321110 05678887765 3333332 247889999998763
No 182
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.61 E-value=2e-05 Score=73.46 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999998763
No 183
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.60 E-value=1e-05 Score=83.41 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=39.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
.+++..++|++++|+|||||||||+++.|++.+.+.+ |+|.+.+.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D~ 142 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAADT 142 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECT
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEcccc
Confidence 3456678999999999999999999999999987643 7888876653
No 184
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.59 E-value=3e-05 Score=73.72 Aligned_cols=40 Identities=35% Similarity=0.531 Sum_probs=31.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCC--------CccceEEECCccC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRDQD--------FDPRSITVNCHQI 138 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~~~--------~~~G~i~i~g~~~ 138 (627)
.++|+|+||||||||++.++|...+.. ...|++.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 689999999999999999999875421 1248888888653
No 185
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.59 E-value=1.5e-05 Score=81.80 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=40.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
++++++ +|++++++|+||+||||+++.|+|.+.+.+ |+|.+.+.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~~d~ 136 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADT 136 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEECCS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCc
Confidence 678888 999999999999999999999999987643 8899888774
No 186
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.55 E-value=4e-05 Score=70.33 Aligned_cols=30 Identities=37% Similarity=0.570 Sum_probs=25.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
++.++++.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666665 99999999999999999986
No 187
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.52 E-value=3.2e-05 Score=72.90 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheee--cCCeE-EeeCCHHHH
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLIL--SRGSV-VHYGSLELL 273 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL--~~G~i-v~~G~~~~~ 273 (627)
|++|||+.++..+.+.|+++.+ +.++|++||+.. +.+.||+++.+ .+|.. +...+.++.
T Consensus 95 p~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~--~~~~ad~i~~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 95 IDAHLDDANVKRVADLIKESSK--ESQFIVITLRDV--MMANADKIIGVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp TTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHH--HHTTCSEEEEEEEETTEEEEEECCHHHH
T ss_pred CccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHH--HHHhCCEEEEEEecCCEEEEEEEEcHHH
Confidence 9999999999999999999864 468999999975 57899999865 46643 223444433
No 188
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.52 E-value=5.6e-06 Score=90.99 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=41.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
.+++++++.+++| +.|+||||+|||||+++|+|... .+.+.+++.++
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~ 100 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 100 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGG
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHH
Confidence 4789999999999 89999999999999999999864 27888888765
No 189
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.45 E-value=1.4e-05 Score=84.14 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=31.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
|+++.+.+|+.++|+||+|+|||||++.|++.+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999998765
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.42 E-value=1.2e-05 Score=84.37 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=42.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+.+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+.+ +++.+-+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~---~~v~v~~~d 93 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG---LKVAVIAVD 93 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEEeec
Confidence 458899999999999999999999999999999999876543 566554443
No 191
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.36 E-value=0.0001 Score=70.25 Aligned_cols=39 Identities=33% Similarity=0.454 Sum_probs=30.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC-----CCC---CccceEEECCcc
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR-----DQD---FDPRSITVNCHQ 137 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~-----~~~---~~~G~i~i~g~~ 137 (627)
.++|+|+||||||||++.|+|... |+. ...|.+.++|++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 479999999999999999999853 211 124788888865
No 192
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.34 E-value=8.5e-05 Score=73.22 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=31.6
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 86 ILKSVSFEAR---DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 86 iL~~vsl~i~---~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
-|.++|+++. +|.+++|.|++||||||+++.|+..+.+ . +.+....
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~---~~~~~~~ 60 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-D---YDVIMTR 60 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-T---SCEEEEC
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-C---CCceeec
Confidence 3778888877 9999999999999999999999988765 3 5554433
No 193
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.29 E-value=6.9e-05 Score=70.42 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=31.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc--eEEECCcc
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR--SITVNCHQ 137 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G--~i~i~g~~ 137 (627)
++|++++|+|++||||||+++.|++.+++. | .+.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~----g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCH----GIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhC----CCcEEEECChH
Confidence 479999999999999999999999987542 4 56666544
No 194
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.29 E-value=2.9e-05 Score=86.51 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=39.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCH 136 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~ 136 (627)
.+++++++++ +|+.++|+||||+|||||+++|++.+.+. .|.+...|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEeccc
Confidence 4678888888 89999999999999999999999988653 377766653
No 195
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.26 E-value=0.00019 Score=77.66 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=38.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC----C-----CCccceEEECCccC--CChhhhcccEEEEccCCCCCCCCCHHHHH
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRD----Q-----DFDPRSITVNCHQI--KKPAQLRKICGFVAQEDNLLPLLTVKETL 167 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~----~-----~~~~G~i~i~g~~~--~~~~~~r~~ig~v~Q~~~l~~~lTV~e~l 167 (627)
.++|+|+||+|||||++.|+|.... . ....|.+.++|+++ .+....++..++.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 7999999999999999999998531 0 01238888888754 12222344445555554445444444444
Q ss_pred H
Q 006897 168 M 168 (627)
Q Consensus 168 ~ 168 (627)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 4
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.22 E-value=9.1e-05 Score=77.80 Aligned_cols=40 Identities=18% Similarity=0.352 Sum_probs=33.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+++.+++|+|++|||||||++.|+|.+.+.+ |+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~---~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERG---HKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcC---CeEEEEeec
Confidence 4688999999999999999999999877643 777776655
No 197
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.16 E-value=0.00021 Score=69.00 Aligned_cols=30 Identities=37% Similarity=0.570 Sum_probs=25.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
++.++++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4455666665 99999999999999999985
No 198
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.08 E-value=1.6e-05 Score=84.01 Aligned_cols=47 Identities=30% Similarity=0.314 Sum_probs=35.3
Q ss_pred eEEEEeEEEEEccCcccccccccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 56 KVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 56 ~l~~~nls~~y~~~~~~~~~~~~~~~~~~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+.++|++..|. .+.++++++++| +|+|++|+|||||++.|.|....
T Consensus 17 ~v~~~~l~~~~~---------------~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQVH---------------RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHHH---------------THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHhC---------------CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 578888887762 345789999987 99999999999999999886443
No 199
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.05 E-value=0.00024 Score=66.95 Aligned_cols=40 Identities=30% Similarity=0.419 Sum_probs=29.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.+++|+|+||||||||++.|.+.+++.+...|.+..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5899999999999999999998765433234666665543
No 200
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.02 E-value=0.00031 Score=67.42 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
+++|+|||||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 201
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.97 E-value=0.00025 Score=76.28 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=40.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~ 139 (627)
++++++ +|++++++|+|||||||++..|++.+.+.+ +.|.+.+.+..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g---~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeecccc
Confidence 678887 899999999999999999999999988753 88888777653
No 202
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.97 E-value=0.00031 Score=66.41 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=26.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 89 SVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 89 ~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999865
No 203
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.93 E-value=0.00036 Score=67.08 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=25.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999998765
No 204
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.90 E-value=0.00018 Score=69.63 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=34.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccc--eEEECCcc
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR--SITVNCHQ 137 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G--~i~i~g~~ 137 (627)
..+++|.+++|+|++||||||+.+.|++.+.+. .| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 346789999999999999999999999887643 25 67776544
No 205
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.85 E-value=0.00083 Score=71.00 Aligned_cols=46 Identities=9% Similarity=0.157 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
|++|||+..+..+.+.|+++. .+.+||++||+++ +...||++++|+
T Consensus 314 p~~~LD~~~~~~l~~~l~~~~--~~~~vi~~th~~~--~~~~~d~~~~l~ 359 (371)
T 3auy_A 314 PTVYLDENRRAKLAEIFRKVK--SIPQMIIITHHRE--LEDVADVIINVK 359 (371)
T ss_dssp TTTTCCHHHHHHHHHHHHHCC--SCSEEEEEESCGG--GGGGCSEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHhc--cCCeEEEEEChHH--HHhhCCEEEEEE
Confidence 899999999999999999874 2468999999986 578999999997
No 206
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.85 E-value=0.00053 Score=72.53 Aligned_cols=31 Identities=26% Similarity=0.492 Sum_probs=27.5
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
+++..+++.+| +++|+|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 57788888786 99999999999999999985
No 207
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.84 E-value=0.00053 Score=63.82 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 208
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.82 E-value=0.00042 Score=72.87 Aligned_cols=34 Identities=35% Similarity=0.424 Sum_probs=27.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
..+|++++++++ .++|+|++|||||||++.|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 358999999998 8999999999999999999994
No 209
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.81 E-value=0.00047 Score=65.97 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 210
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.79 E-value=5.9e-05 Score=78.71 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=36.2
Q ss_pred cceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 006897 84 LHILKSVSFEARDSEI--LAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~--~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4588899999999999 999999999999999999998754
No 211
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.77 E-value=0.00055 Score=68.93 Aligned_cols=49 Identities=16% Similarity=0.077 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
|+|+++.....++.+.+.+..++.+.+..+..|..+ ++.+.++++.-.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~-~~e~~~~~l~~~~ 192 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDE-DIEREIKHISELL 192 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCH-HHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCH-HHHHHHHHHHHHH
Confidence 889999999999999998887665555566777766 5788888765443
No 212
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.77 E-value=0.00047 Score=65.07 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=26.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
..+|.++.|+|++||||||+.+.|++.+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999988764
No 213
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.73 E-value=0.0006 Score=64.49 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=20.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+++++++..++. .++++|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 5689999999999999999873
No 214
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.69 E-value=0.00021 Score=73.35 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=38.5
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccC
Q 006897 88 KS-VSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138 (627)
Q Consensus 88 ~~-vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~ 138 (627)
++ ++++.+ |++++++|+||+||||++..|++.+.+.+ +++.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecCC
Confidence 45 777766 99999999999999999999999887543 7777766553
No 215
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.69 E-value=0.00018 Score=75.20 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=34.4
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCC
Q 006897 85 HILKSVSFEARDSEI--LAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~--~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+++++++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478899999999999 99999999999999999998653
No 216
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.60 E-value=0.00072 Score=69.38 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++..++|+|++|+|||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34489999999999999999999863
No 217
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.60 E-value=0.0005 Score=68.60 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=35.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
++++.+ ..+++.++.|+|++||||||+.+.|+..+.. +.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 444444 5678899999999999999999999987632 556677654
No 218
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.55 E-value=0.0011 Score=62.12 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 219
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.54 E-value=0.00065 Score=73.26 Aligned_cols=47 Identities=6% Similarity=0.068 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhheeec
Q 006897 211 GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLILS 260 (627)
Q Consensus 211 PtsgLD~~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~vL~ 260 (627)
|+++||+..+..+.+.|+++.+ .|.++|++||+.. ....||+++.+.
T Consensus 364 p~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~--~~~~~d~~~~~~ 410 (430)
T 1w1w_A 364 VDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNT--MFEKSDALVGVY 410 (430)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHH--HHTTCSEEEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEEE
Confidence 8999999999999999999854 4789999999964 577899999986
No 220
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.53 E-value=0.0014 Score=69.19 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=29.0
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHcCCCCC--------CCccceEEECCcc
Q 006897 96 DSEI-LAVVGPSGTGKSSLLRIISGRVRDQ--------DFDPRSITVNCHQ 137 (627)
Q Consensus 96 ~Ge~-~aIiGpnGsGKSTLl~~L~Gl~~~~--------~~~~G~i~i~g~~ 137 (627)
+|-. ++|+|++|||||||++.|+|..... +...|.+.++|.+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 3444 9999999999999999999986421 0234778887754
No 221
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.53 E-value=0.00094 Score=63.81 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 222
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.53 E-value=0.0012 Score=60.61 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998653
No 223
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.51 E-value=0.00026 Score=67.57 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=31.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
..+++++|+..++++ ++|+|++|+|||||++.+.+-
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 358999999988885 689999999999999999863
No 224
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.47 E-value=0.0011 Score=65.87 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=30.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
.++++++..++| +.|.||+|+|||||+++|++.... --+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~-----~~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV-----PFFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC-----CEEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC-----CEEEEeHHH
Confidence 455666666666 889999999999999999987532 235666544
No 225
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.37 E-value=0.0016 Score=64.03 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=24.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999999999743
No 226
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.35 E-value=0.0018 Score=59.72 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 227
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.34 E-value=0.002 Score=59.93 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997653
No 228
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.23 E-value=0.007 Score=63.51 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=28.8
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 86 ILKSVS--FEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 86 iL~~vs--l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-||.+- .-+++|+++.|.||+|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 466653 35899999999999999999999888754
No 229
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.23 E-value=0.002 Score=60.30 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 230
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.22 E-value=0.0023 Score=59.66 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 231
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.19 E-value=0.002 Score=68.43 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=25.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+..|..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5567889999999999999999999987
No 232
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.16 E-value=0.0025 Score=62.82 Aligned_cols=26 Identities=46% Similarity=0.640 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..-+++|.||+||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998543
No 233
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.15 E-value=0.0027 Score=59.49 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|.++.|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998644
No 234
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.09 E-value=0.002 Score=60.21 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+++|+|++|||||||++.|++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999887653
No 235
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.08 E-value=0.00064 Score=70.83 Aligned_cols=154 Identities=11% Similarity=0.080 Sum_probs=78.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhccc-EE---EEccCCCCCC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKI-CG---FVAQEDNLLP 159 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~-ig---~v~Q~~~l~~ 159 (627)
..-|+.+..-+++|+++.|.|++|+|||||+.-++......+ +.+.+..-+. +..++..+ ++ -++.+...-.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g---~~Vl~fSlEm-s~~ql~~Rlls~~~~v~~~~l~~g 108 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD---RGVAVFSLEM-SAEQLALRALSDLTSINMHDLESG 108 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CEEEEEESSS-CHHHHHHHHHHHHHCCCHHHHHHT
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCC-CHHHHHHHHHHHhhCCCHHHHhcC
Confidence 346888877899999999999999999999988875433211 4444433221 22222111 11 1111110011
Q ss_pred CCCHHHHHHHH--H----H--hcC---CCCCHHHHHHHHHHHHHHc-CCccc----cCCcCCccccCCCCCCCHHHHHHH
Q 006897 160 LLTVKETLMFS--A----N--FRL---KGMSHKEKEDRVESLMDEL-GLTHV----AGSFVGDEENRGISGLDSTSALQV 223 (627)
Q Consensus 160 ~lTV~e~l~~~--~----~--~~~---~~~~~~~~~~~v~~~l~~l-gL~~~----~~~~~gGe~qrPtsgLD~~~~~~i 223 (627)
.++-.|--.+. . . +.. +..+-.+...++..+.+.. |+.-+ .....++.. .+. ......++
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~-~~~---r~~ei~~i 184 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKA-TKE---RHEQIAEI 184 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHH-HHH---CCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCC-CCC---hHHHHHHH
Confidence 23332221111 0 0 110 1123344555555555554 43211 111111110 000 01125688
Q ss_pred HHHHHHHHHcCCCEEEEEccCc
Q 006897 224 IELLASMAKAKQRTVVLSIHQP 245 (627)
Q Consensus 224 ~~~L~~l~~~~g~Tii~~tH~~ 245 (627)
.+.|+.++++.+.+||+++|--
T Consensus 185 sr~LK~lAkel~vpVi~lsQl~ 206 (338)
T 4a1f_A 185 SRELKTLARELEIPIIALVQLN 206 (338)
T ss_dssp HHHHHHHHHHHTSCEEEEEECC
T ss_pred HHHHHHHHHHcCCeEEEEEecC
Confidence 8999999999999999999943
No 236
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.03 E-value=0.0027 Score=59.67 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999854
No 237
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.00 E-value=0.0034 Score=60.64 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 238
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.99 E-value=0.0032 Score=62.76 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998754
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.98 E-value=0.0021 Score=74.79 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=34.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+.+++|+.+.|+||||+|||||+++|+|.+.. --+.+++.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-----~~i~v~~~~ 273 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE 273 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-----EEEEEEHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-----cEEEEEchH
Confidence 36889999999999999999999999998753 346666654
No 240
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.97 E-value=0.0033 Score=59.72 Aligned_cols=22 Identities=45% Similarity=0.771 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999998754
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.96 E-value=0.0036 Score=57.46 Aligned_cols=19 Identities=26% Similarity=0.733 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 006897 99 ILAVVGPSGTGKSSLLRII 117 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L 117 (627)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 242
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.92 E-value=0.004 Score=58.29 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998543
No 243
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.88 E-value=0.0041 Score=58.92 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999754
No 244
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.86 E-value=0.0042 Score=63.14 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=28.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
..|.++.|.|||||||||+.+.|+..++. +.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEec
Confidence 45789999999999999999999865421 5566654
No 245
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.83 E-value=0.004 Score=58.15 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++..+.|+|++||||||+.+.|+-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999843
No 246
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.82 E-value=0.0048 Score=58.59 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 247
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.79 E-value=0.0053 Score=58.53 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999987554
No 248
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.77 E-value=0.0045 Score=60.75 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4789999999999999999997654
No 249
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.74 E-value=0.0048 Score=58.45 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999964
No 250
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.72 E-value=0.0049 Score=57.27 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998654
No 251
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.70 E-value=0.0057 Score=56.65 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006897 98 EILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 252
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.68 E-value=0.0095 Score=64.40 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=77.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhccc-E---EEEccCCCCCCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKI-C---GFVAQEDNLLPL 160 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~-i---g~v~Q~~~l~~~ 160 (627)
.-|+.+..-+++|+++.|.|++|+|||||+.-++....... ....+.+..+. +..++.++ + +-++.+...-..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~~~~~~i~~~~l~~g~ 264 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMMCSEARIDMNRVRLGQ 264 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHHHHHTTCCTTTCCGGG
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhCCC
Confidence 45788877799999999999999999999988876443211 00223333321 22222211 1 111111111112
Q ss_pred CCHHHH--HHHHHH------hcC---CCCCHHHHHHHHHHHHHHcCCccc-cCCc---CCcc-ccCCCCCCCHHHHHHHH
Q 006897 161 LTVKET--LMFSAN------FRL---KGMSHKEKEDRVESLMDELGLTHV-AGSF---VGDE-ENRGISGLDSTSALQVI 224 (627)
Q Consensus 161 lTV~e~--l~~~~~------~~~---~~~~~~~~~~~v~~~l~~lgL~~~-~~~~---~gGe-~qrPtsgLD~~~~~~i~ 224 (627)
++-.|- +.-+.. +.. +..+..+...++.++.+.-+++-+ .|.+ .+.. .++ +.-+.....++.
T Consensus 265 l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~--~~~r~~~i~~i~ 342 (444)
T 2q6t_A 265 LTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKS--GENRQQEIAAIS 342 (444)
T ss_dssp CCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC---------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCC--CCCHHHHHHHHH
Confidence 333221 111110 000 112334455556666655554321 1211 1110 000 011123446888
Q ss_pred HHHHHHHHcCCCEEEEEcc
Q 006897 225 ELLASMAKAKQRTVVLSIH 243 (627)
Q Consensus 225 ~~L~~l~~~~g~Tii~~tH 243 (627)
+.|+.++++.+.+||+++|
T Consensus 343 ~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 343 RGLKALARELGIPIIALSQ 361 (444)
T ss_dssp HHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHHHhCCeEEEEec
Confidence 9999999999999999988
No 253
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.68 E-value=0.0054 Score=58.62 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998543
No 254
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.66 E-value=0.021 Score=70.84 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=26.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
-+++|+++.|.||+|+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 499999999999999999999999976543
No 255
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.63 E-value=0.0053 Score=57.81 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++.+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 36779999999999999999999854
No 256
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.61 E-value=0.0026 Score=60.93 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987764
No 257
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.56 E-value=0.0058 Score=62.38 Aligned_cols=41 Identities=24% Similarity=0.410 Sum_probs=32.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 92 FEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 92 l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
+.+.++..+.|.||+|+|||||+++|++.... +-+.+++.+
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~~~~ 84 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGPE 84 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEECHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEEhHH
Confidence 34678899999999999999999999986531 556666543
No 258
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.56 E-value=0.0071 Score=56.69 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++.+++|.|++||||||+.+.|+-.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999743
No 259
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.53 E-value=0.0063 Score=58.22 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|.+++|.|++||||||+.+.|+-.+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998544
No 260
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.51 E-value=0.0037 Score=67.20 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=32.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
++.+++++||+|+||||++..|++.+.+.+ +.|.+-+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecC
Confidence 689999999999999999999998887643 667665444
No 261
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.44 E-value=0.0068 Score=56.74 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 262
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.38 E-value=0.0045 Score=66.99 Aligned_cols=35 Identities=9% Similarity=0.204 Sum_probs=29.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
.-|+.+..-+++|+++.|.|++|+|||||+.-++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 45777766799999999999999999999877764
No 263
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.34 E-value=0.012 Score=60.36 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=32.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
...+++..+.+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45789988888 8899999999999999999999864
No 264
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.31 E-value=0.0088 Score=56.32 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998655
No 265
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.30 E-value=0.0081 Score=57.08 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 266
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.29 E-value=0.0068 Score=57.18 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999998543
No 267
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.28 E-value=0.0065 Score=56.57 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=18.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998543
No 268
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.22 E-value=0.011 Score=57.24 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998543
No 269
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.0089 Score=55.94 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
=.++|+|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 270
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.15 E-value=0.004 Score=67.85 Aligned_cols=34 Identities=29% Similarity=0.580 Sum_probs=29.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 86 iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++++.+++| +.|+||+|+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 567788888888 7899999999999999999864
No 271
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.12 E-value=0.0079 Score=63.79 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=29.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC 135 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g 135 (627)
.+.-++|+||||||||||++.|++.....+ +.|.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~---~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG---SRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC---CEEEEEe
Confidence 566789999999999999999998765543 6666543
No 272
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.10 E-value=0.011 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999998764
No 273
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.09 E-value=0.0098 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 274
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.07 E-value=0.011 Score=57.59 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=21.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++.+++|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999854
No 275
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.06 E-value=0.011 Score=53.56 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 276
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.05 E-value=0.0076 Score=59.06 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=22.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
+.+|+.+++.||+||||||++.++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4679999999999999999888765
No 277
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.04 E-value=0.009 Score=54.19 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.++|+|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999987543
No 278
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.03 E-value=0.012 Score=56.56 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999743
No 279
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.00 E-value=0.023 Score=59.78 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=27.4
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 86 ILKSVS--FEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 86 iL~~vs--l~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
-||.+- .-+++|+++.|.||+|+|||||...++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 355543 3689999999999999999999877753
No 280
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.00 E-value=0.013 Score=55.56 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998543
No 281
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.99 E-value=0.012 Score=59.21 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 282
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.98 E-value=0.011 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 283
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.98 E-value=0.011 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 284
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.98 E-value=0.012 Score=53.41 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
No 285
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.97 E-value=0.013 Score=54.94 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 286
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.94 E-value=0.012 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 287
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.94 E-value=0.011 Score=54.34 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998543
No 288
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.93 E-value=0.014 Score=55.52 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
..+++|.|++||||||+.+.|+-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999844
No 289
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.93 E-value=0.014 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998543
No 290
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.90 E-value=0.011 Score=53.27 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998754
No 291
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.89 E-value=0.01 Score=55.29 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 292
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.89 E-value=0.012 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++++|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998765
No 293
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.87 E-value=0.012 Score=53.99 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 294
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.87 E-value=0.015 Score=53.34 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
No 295
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.86 E-value=0.013 Score=53.34 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 296
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.85 E-value=0.014 Score=56.08 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 297
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.84 E-value=0.017 Score=52.99 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.-.++|+|++|+|||||++.+.+-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999874
No 298
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.83 E-value=0.013 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998654
No 299
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.83 E-value=0.016 Score=57.82 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998653
No 300
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.82 E-value=0.013 Score=57.89 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.++|+|++|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999998643
No 301
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.82 E-value=0.014 Score=60.77 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=29.3
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 86 ILKSVS-FEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 86 iL~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-||.+- .-+++|+++.|.||+|+|||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 46899999999999999999999998874
No 302
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.82 E-value=0.011 Score=57.06 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+.++.|+|++||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998543
No 303
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.81 E-value=0.013 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|++|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 304
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.81 E-value=0.013 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 305
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.80 E-value=0.013 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 306
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.80 E-value=0.012 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998543
No 307
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.78 E-value=0.015 Score=54.38 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999753
No 308
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.77 E-value=0.021 Score=59.86 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
|-.++|+|.+|+|||||++.|+|-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999984
No 309
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.76 E-value=0.012 Score=53.39 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 310
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.73 E-value=0.013 Score=54.92 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999763
No 311
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.70 E-value=0.016 Score=55.11 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.-+++|+|+.||||||+.+.|+-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999854
No 312
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.66 E-value=0.013 Score=54.48 Aligned_cols=23 Identities=48% Similarity=0.557 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999998864
No 313
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.65 E-value=0.013 Score=53.68 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998763
No 314
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.65 E-value=0.016 Score=57.31 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998643
No 315
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.65 E-value=0.018 Score=56.79 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++-+++|.||+||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999743
No 316
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.64 E-value=0.012 Score=64.75 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=29.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
.-|+.+..-+.+|+++.|.|++|+|||||+.-++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 45666655699999999999999999999877753
No 317
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.60 E-value=0.016 Score=52.50 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 318
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.60 E-value=0.016 Score=53.68 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 319
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.59 E-value=0.014 Score=54.09 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006897 100 LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999999764
No 320
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.59 E-value=0.018 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 321
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.55 E-value=0.016 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.|.|..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998864
No 322
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.54 E-value=0.016 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 323
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.53 E-value=0.017 Score=52.56 Aligned_cols=22 Identities=23% Similarity=0.458 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 324
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.53 E-value=0.016 Score=60.71 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..-.++++|++|+|||||++.|+|..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999999864
No 325
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.50 E-value=0.09 Score=66.06 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=34.7
Q ss_pred eeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCcc
Q 006897 86 ILKSVSF--EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137 (627)
Q Consensus 86 iL~~vsl--~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~ 137 (627)
-||.+-. -+++|+++.|.||+|+|||||+..++......+ ..-++++.+.
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~ 421 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEH 421 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTS
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCC
Confidence 4665542 599999999999999999999888765432221 1345556544
No 326
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.50 E-value=0.017 Score=52.13 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++++|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999753
No 327
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.50 E-value=0.017 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 328
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.47 E-value=0.018 Score=53.61 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4689999999999999999987543
No 329
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.47 E-value=0.021 Score=55.15 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999987653
No 330
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.45 E-value=0.019 Score=58.62 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.| .++|+|++|+|||||++.|.|..
T Consensus 7 ~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 7 SG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred CC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 44 58999999999999999999863
No 331
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.44 E-value=0.011 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006897 97 SEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999974
No 332
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.43 E-value=0.021 Score=58.97 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=29.1
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 86 ILKSVS-FEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 86 iL~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.||.+- .-+++|+++.|.||+|+|||||+..++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 355543 57899999999999999999999988764
No 333
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.40 E-value=0.01 Score=60.47 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=18.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++-+++|.||+||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3558999999999999999999854
No 334
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.39 E-value=0.019 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 335
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.36 E-value=0.019 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48899999999999999998653
No 336
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.35 E-value=0.02 Score=57.82 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++.-+.|.||+|+|||||++.+++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999765
No 337
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.34 E-value=0.017 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 338
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.33 E-value=0.019 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 339
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.32 E-value=0.019 Score=53.40 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|+.|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 340
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.32 E-value=0.022 Score=55.23 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999743
No 341
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.31 E-value=0.016 Score=60.64 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.2
Q ss_pred eCCe--EEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSE--ILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge--~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++. .+.|.||+|+|||||++.+++...+
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456 8999999999999999999987765
No 342
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.31 E-value=0.017 Score=58.06 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|.|.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999997753
No 343
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.28 E-value=0.02 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 344
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.27 E-value=0.02 Score=57.86 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHH
Q 006897 97 SEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
.-+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 345
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.27 E-value=0.022 Score=58.28 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999863
No 346
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.26 E-value=0.019 Score=60.49 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006897 100 LAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 100 ~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999986
No 347
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.26 E-value=0.021 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999766543
No 348
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.25 E-value=0.028 Score=58.18 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46689999999999999999999765
No 349
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.25 E-value=0.017 Score=60.21 Aligned_cols=29 Identities=17% Similarity=0.501 Sum_probs=25.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.++..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999987643
No 350
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.24 E-value=0.017 Score=54.63 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
No 351
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.23 E-value=0.037 Score=52.89 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=29.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..++..-..+ .|..+.|+||+|+|||||...|+...
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4577766665 57899999999999999999998653
No 352
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.20 E-value=0.021 Score=54.61 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 353
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.20 E-value=0.022 Score=56.79 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999863
No 354
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.17 E-value=0.022 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 355
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.17 E-value=0.022 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 356
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.16 E-value=0.024 Score=57.47 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=24.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVRDQ 124 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~~~ 124 (627)
..+.|.||+|+|||||.+.|++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 689999999999999999999887543
No 357
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.16 E-value=0.023 Score=52.72 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.=.++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
No 358
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.14 E-value=0.022 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 359
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.12 E-value=0.02 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 360
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.11 E-value=0.029 Score=54.28 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=24.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+|.+++|.|++||||||+.+.|+-.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876643
No 361
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.09 E-value=0.029 Score=51.66 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998654
No 362
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.08 E-value=0.023 Score=53.00 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 363
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.05 E-value=0.023 Score=56.34 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 364
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.05 E-value=0.026 Score=54.47 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
|-.+.|+|+.||||||+.+.|+-.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998543
No 365
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.04 E-value=0.024 Score=52.32 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 46899999999999999998653
No 366
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.03 E-value=0.022 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 367
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.03 E-value=0.021 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 368
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.00 E-value=0.025 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999854
No 369
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.00 E-value=0.027 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 370
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.00 E-value=0.022 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 371
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.98 E-value=0.025 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 372
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.98 E-value=0.031 Score=52.88 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.-+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999987654
No 373
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.97 E-value=0.027 Score=56.13 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 374
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.96 E-value=0.025 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 375
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.94 E-value=0.023 Score=55.67 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=22.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 93 EARDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 93 ~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+..+|.++.|.|++||||||+.+.|+..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999986553
No 376
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.93 E-value=0.026 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 377
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.90 E-value=0.027 Score=54.12 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999753
No 378
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.85 E-value=0.028 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 379
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.83 E-value=0.03 Score=58.11 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999998654
No 380
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.83 E-value=0.024 Score=53.50 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57899999999999999998764
No 381
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.83 E-value=0.032 Score=56.49 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006897 98 EILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 382
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.82 E-value=0.027 Score=54.05 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998653
No 383
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.81 E-value=0.035 Score=56.89 Aligned_cols=25 Identities=28% Similarity=0.652 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998654
No 384
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.81 E-value=0.028 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
No 385
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.81 E-value=0.027 Score=56.66 Aligned_cols=23 Identities=22% Similarity=0.602 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.79 E-value=0.035 Score=54.14 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998543
No 387
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.79 E-value=0.028 Score=53.17 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 388
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.78 E-value=0.029 Score=54.32 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 389
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.78 E-value=0.028 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999854
No 390
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.78 E-value=0.034 Score=60.09 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=30.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++++.+ ..+-+|+..+|+||+|+|||||++.|++..
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 466666 677789999999999999999999998654
No 391
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.76 E-value=0.015 Score=59.91 Aligned_cols=36 Identities=8% Similarity=0.217 Sum_probs=31.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 84 ~~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
..-|+++..-+++|+++.|.|++|+|||||+..++.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346888887799999999999999999999888864
No 392
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.76 E-value=0.032 Score=54.97 Aligned_cols=28 Identities=18% Similarity=0.552 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
+|.+++|.|++||||||+++.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999876643
No 393
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.75 E-value=0.029 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 394
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.75 E-value=0.026 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 395
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.75 E-value=0.026 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999843
No 396
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.74 E-value=0.022 Score=53.16 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 397
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.74 E-value=0.029 Score=52.43 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 398
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.73 E-value=0.03 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999999998753
No 399
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.72 E-value=0.03 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 400
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.72 E-value=0.015 Score=55.73 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999874
No 401
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.70 E-value=0.0084 Score=57.62 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 889999999999999999986543
No 402
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.69 E-value=0.032 Score=59.72 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-.+.+++.|+|++||||||+.+.|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999999753
No 403
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.68 E-value=0.031 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998754
No 404
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.68 E-value=0.038 Score=53.67 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=23.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+++..++.|+||.||||+|..+.|+-.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999854
No 405
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.68 E-value=0.027 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999887643
No 406
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.67 E-value=0.027 Score=53.30 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 407
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.67 E-value=0.031 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
No 408
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.66 E-value=0.035 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 409
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.65 E-value=0.031 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 410
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.64 E-value=0.031 Score=56.94 Aligned_cols=23 Identities=48% Similarity=0.666 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
No 411
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.64 E-value=0.027 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999875
No 412
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.61 E-value=0.033 Score=52.35 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.++|+|++|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998654
No 413
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.57 E-value=0.11 Score=64.33 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=28.7
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 86 ILKSVS--FEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 86 iL~~vs--l~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
-||.+- .-+++|+++.|.||+|+|||||...++..
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 466664 35999999999999999999998777543
No 414
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.54 E-value=0.04 Score=56.54 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=28.5
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 86 ILKSVS-FEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 86 iL~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
.||.+- .-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455543 5689999999999999999999988874
No 415
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.54 E-value=0.037 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 416
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.51 E-value=0.026 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 417
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.50 E-value=0.038 Score=53.46 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
+|.++.+-|++||||||+++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999876643
No 418
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.49 E-value=0.035 Score=53.31 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998654
No 419
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.49 E-value=0.044 Score=53.46 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+|.++++.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999986654
No 420
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.47 E-value=0.036 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47899999999999999887653
No 421
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.47 E-value=0.031 Score=53.08 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 422
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.43 E-value=0.035 Score=53.11 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 423
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.43 E-value=0.034 Score=55.65 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999765
No 424
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.41 E-value=0.04 Score=53.50 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=25.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
.+|.++.+-|++||||||+.+.|+-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999876653
No 425
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.38 E-value=0.032 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 426
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.34 E-value=0.037 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998654
No 427
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.34 E-value=0.036 Score=51.01 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
..+..+.|.||+|+|||||++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456778999999999999999986653
No 428
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.33 E-value=0.026 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999764
No 429
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.33 E-value=0.043 Score=53.74 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998665
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.32 E-value=0.042 Score=56.61 Aligned_cols=24 Identities=21% Similarity=0.510 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999754
No 431
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.26 E-value=0.03 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+..+.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 346789999999999999999997653
No 432
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.24 E-value=0.034 Score=56.02 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.++|+|.+|+|||||++.|.|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999998753
No 433
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.24 E-value=0.034 Score=55.33 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999998665
No 434
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.22 E-value=0.038 Score=54.96 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 435
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.21 E-value=0.035 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 436
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.20 E-value=0.057 Score=52.51 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=26.8
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006897 86 ILKSVS-FEARDSEILAVVGPSGTGKSSLLRIIS 118 (627)
Q Consensus 86 iL~~vs-l~i~~Ge~~aIiGpnGsGKSTLl~~L~ 118 (627)
-||++- .=+++|+++.|.|++|+|||||+.-++
T Consensus 18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 466643 468999999999999999999976543
No 437
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.18 E-value=0.0099 Score=69.19 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=29.5
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 90 VSFEARDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 90 vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.++.+.+|+.+.|.||+|+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 456778999999999999999999999998864
No 438
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.15 E-value=0.037 Score=52.29 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 439
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.15 E-value=0.046 Score=52.64 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 440
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.13 E-value=0.024 Score=54.13 Aligned_cols=23 Identities=17% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.|..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 441
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.05 E-value=0.041 Score=54.95 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 442
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.98 E-value=0.041 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 443
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.92 E-value=0.083 Score=49.29 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=26.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
..++..-.. -.|.-+.|.|+||+|||||...|..
T Consensus 5 ~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456665555 4578899999999999999988864
No 444
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.91 E-value=0.059 Score=55.10 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998654
No 445
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.77 E-value=0.052 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
No 446
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.77 E-value=0.059 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.|+||.||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998543
No 447
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.73 E-value=0.016 Score=59.91 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=26.3
Q ss_pred eeeceEEEEeCC--eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 86 ILKSVSFEARDS--EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 86 iL~~vsl~i~~G--e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+++.+.-.+..| ..+.|.||+|+|||||++.+++.+
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444334444 338999999999999999999765
No 448
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.71 E-value=0.049 Score=52.31 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-.++|+|++|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998653
No 449
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.70 E-value=0.053 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 450
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.60 E-value=0.05 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47899999999999999998653
No 451
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.59 E-value=0.026 Score=53.15 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999875
No 452
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.56 E-value=0.049 Score=58.94 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999885
No 453
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.55 E-value=0.036 Score=51.57 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006897 99 ILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~G 119 (627)
.++++|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
No 454
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.53 E-value=0.063 Score=52.76 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
....-+.|.||+|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998754
No 455
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.41 E-value=0.017 Score=57.51 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=24.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++......| +.|.||+|+|||||++.|+...
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3444444555 7799999999999999998754
No 456
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.39 E-value=0.06 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999765
No 457
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.39 E-value=0.054 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++++|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999998754
No 458
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.35 E-value=0.066 Score=56.72 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998554
No 459
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.35 E-value=0.28 Score=61.73 Aligned_cols=139 Identities=14% Similarity=0.102 Sum_probs=73.4
Q ss_pred eeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccceEEECCccCCChhhhcccEEEEccCCCCCCCCCH
Q 006897 86 ILKSVSF--EARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV 163 (627)
Q Consensus 86 iL~~vsl--~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~~~~~~G~i~i~g~~~~~~~~~r~~ig~v~Q~~~l~~~lTV 163 (627)
-||.+-. -+++|+++.|.|++|+|||||+..++....... ..-+++.++..... ...+++|.-.++-.+.+..+
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g--~~VlyiS~Ees~~q-l~A~rlG~~~~~l~i~~~~~- 794 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDP-IYARKLGVDIDNLLCSQPDT- 794 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCH-HHHHHTTCCTTTCEEECCSS-
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECCCcHHH-HHHHHcCCCccceEEecCCC-
Confidence 3666664 699999999999999999999999886554321 13456666552221 11122221111001111122
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCccc-cCC---cCC-ccc-cCCC--C-CCCHHHHHHHHHHHHHHHHcC
Q 006897 164 KETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV-AGS---FVG-DEE-NRGI--S-GLDSTSALQVIELLASMAKAK 234 (627)
Q Consensus 164 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~---~~g-Ge~-qrPt--s-gLD~~~~~~i~~~L~~l~~~~ 234 (627)
.++..++++++.+..+++-+ .|. ... .+- .+|- + +|-.....++...|+.++++.
T Consensus 795 ----------------i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~ 858 (2050)
T 3cmu_A 795 ----------------GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 858 (2050)
T ss_dssp ----------------HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------------HHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 23333344444433333211 111 111 000 0110 1 333334566777899999999
Q ss_pred CCEEEEEccC
Q 006897 235 QRTVVLSIHQ 244 (627)
Q Consensus 235 g~Tii~~tH~ 244 (627)
+.+||++.|-
T Consensus 859 ~v~VI~l~Qv 868 (2050)
T 3cmu_A 859 NTLLIFINQI 868 (2050)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEeccc
Confidence 9999999983
No 460
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.32 E-value=0.053 Score=58.40 Aligned_cols=78 Identities=8% Similarity=0.224 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEccCccHHHHHHhhhhee-ecCCeEEeeCCHH--HHHH----HHHhcCCCCCCCCCh
Q 006897 218 TSALQVIELLASMAKAKQRTVVLSIHQPSYRILQYISKFLI-LSRGSVVHYGSLE--LLEE----TINNLGYQIPTQLNA 290 (627)
Q Consensus 218 ~~~~~i~~~L~~l~~~~g~Tii~~tH~~~~~i~~~~D~i~v-L~~G~iv~~G~~~--~~~~----~~~~~g~~~p~~~~~ 290 (627)
..+..+...+..+.+ .|+.||++||++..++..+.+++.- +..|.++..++++ +..+ .....+...+. +.
T Consensus 211 ~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~--e~ 287 (440)
T 2z4s_A 211 GVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE--EV 287 (440)
T ss_dssp HHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT--TH
T ss_pred HHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH--HH
Confidence 567888899988864 5889999999854322223333333 4567666666543 3322 23334554443 34
Q ss_pred HHHHHHhc
Q 006897 291 IEFAMEIM 298 (627)
Q Consensus 291 ~d~~~~~~ 298 (627)
.+++.+..
T Consensus 288 l~~la~~~ 295 (440)
T 2z4s_A 288 LNFVAENV 295 (440)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 55555443
No 461
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.15 E-value=0.06 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 462
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.01 E-value=0.083 Score=47.37 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
..+.-+.|.||+|+|||++.+.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456688999999999999999987653
No 463
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.01 E-value=0.082 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=19.6
Q ss_pred CCeEEEEECCCCCcHHHHH-HHHH
Q 006897 96 DSEILAVVGPSGTGKSSLL-RIIS 118 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl-~~L~ 118 (627)
+|.+..+.||.|+||||++ +++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999997 5543
No 464
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.64 E-value=0.11 Score=53.43 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=27.8
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006897 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119 (627)
Q Consensus 87 L~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~G 119 (627)
|+.+-.-+.+|.++.|.||+|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444336789999999999999999999999874
No 465
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.55 E-value=0.089 Score=56.54 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVRD 123 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~~ 123 (627)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999976654
No 466
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.52 E-value=0.094 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998654
No 467
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.47 E-value=0.097 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-.+||+|+.||||||+.+.|+-.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999997543
No 468
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.47 E-value=0.11 Score=49.70 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
|.+++|=|+-||||||+++.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999987664
No 469
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.27 E-value=0.11 Score=52.49 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999865
No 470
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.26 E-value=0.081 Score=54.94 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998655
No 471
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.04 E-value=0.11 Score=52.44 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999998665
No 472
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.02 E-value=0.12 Score=52.74 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+-.++|+|++|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998875
No 473
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.38 E-value=0.042 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.++|+|++|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 5899999999999999988753
No 474
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.98 E-value=0.078 Score=50.76 Aligned_cols=22 Identities=36% Similarity=0.770 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 006897 99 ILAVVGPSGTGKSSLLRI-ISGR 120 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~-L~Gl 120 (627)
.++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5554
No 475
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.95 E-value=0.1 Score=55.49 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|.+++|||||++.|+|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37899999999999999999864
No 476
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.92 E-value=0.12 Score=53.82 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
..-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999987653
No 477
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=90.85 E-value=0.078 Score=55.24 Aligned_cols=23 Identities=48% Similarity=0.614 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 478
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.84 E-value=0.1 Score=56.12 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998853
No 479
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.78 E-value=0.13 Score=51.23 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34557889999999999999999865
No 480
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=90.73 E-value=0.028 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006897 99 ILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 99 ~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.++|+|++|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 481
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.67 E-value=0.14 Score=52.29 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
No 482
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.50 E-value=0.14 Score=52.55 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999765
No 483
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.46 E-value=0.12 Score=54.42 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
++..++++|++|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999986
No 484
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=90.37 E-value=0.14 Score=53.26 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=27.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 88 ~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
..+.++++----++|+|.+++|||||++.|++.
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 556666666556899999999999999999864
No 485
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.29 E-value=0.089 Score=56.52 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=23.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+++|+|++|+||||+...|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999998765
No 486
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.28 E-value=0.15 Score=57.14 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+|.++.|+|.+||||||+.+.|+-.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998665
No 487
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.23 E-value=0.11 Score=56.41 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGR 120 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl 120 (627)
+|=.++|+|++|+|||||++.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999885
No 488
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.18 E-value=0.091 Score=60.76 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 94 ARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 94 i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.|+.+.|+||+||||||++.++.+..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999886543
No 489
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.17 E-value=0.13 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33467788999999999999999655
No 490
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.14 E-value=0.14 Score=56.07 Aligned_cols=28 Identities=4% Similarity=-0.018 Sum_probs=25.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
+.|-.+.|+|.+||||||+-+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999987764
No 491
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.04 E-value=0.15 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 97 SEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 97 Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.-+.|.||+|+|||||.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999999999998765
No 492
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.03 E-value=0.15 Score=56.71 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
+.|-++.|.|++||||||+.+.|+-.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998654
No 493
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=90.01 E-value=0.12 Score=57.57 Aligned_cols=34 Identities=32% Similarity=0.552 Sum_probs=26.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 85 ~iL~~vsl~i~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+|.+++ .+--.++|+|+.|+|||||+|.|.|..
T Consensus 29 ~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 29 KILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3566642 234578999999999999999999974
No 494
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.98 E-value=0.15 Score=52.85 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRVR 122 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~~ 122 (627)
.+|..+.|.||+|+|||||.+.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999997764
No 495
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=89.95 E-value=0.13 Score=56.99 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006897 98 EILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 98 e~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999864
No 496
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.91 E-value=0.15 Score=53.17 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
++.-+.|.||+|+||||+.+.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 44568899999999999999999765
No 497
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.89 E-value=0.17 Score=51.78 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..-+.|.||+|+|||+|.+.++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345568999999999999999998654
No 498
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.78 E-value=0.17 Score=52.65 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 95 ~~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..-+.|.||+|+|||||++.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999998754
No 499
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.78 E-value=0.096 Score=56.55 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=25.4
Q ss_pred ceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 006897 89 SVSFEARDSEI--LAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 89 ~vsl~i~~Ge~--~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+.-.++.|++ +.|.||+|+|||||.++|+...
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 33334445554 8899999999999999999765
No 500
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.70 E-value=0.17 Score=52.73 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006897 96 DSEILAVVGPSGTGKSSLLRIISGRV 121 (627)
Q Consensus 96 ~Ge~~aIiGpnGsGKSTLl~~L~Gl~ 121 (627)
.+..+.|.||+|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998654
Done!