BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006898
(626 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/547 (59%), Positives = 416/547 (76%), Gaps = 4/547 (0%)
Query: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVL
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
LA+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
++PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
S LG+FA +E ++K++I+ +F +L D+QDSVRLLAVE C + +LL +D A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
+ ++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
+FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
P+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
L M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 541 LIPIVDQ 547
+ PI+D
Sbjct: 546 IGPILDN 552
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/413 (21%), Positives = 162/413 (39%), Gaps = 44/413 (10%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL +P +++ A + + R F + P+I KT+L + L +D
Sbjct: 234 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 293
Query: 176 MPMVRRSAASNLGKFAATVEP-----------------------AHLKTDIMSIFEDLT- 211
VR +A+ + +F + H+K+ + S+ L+
Sbjct: 294 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353
Query: 212 -------------------QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD 252
+D+ VRL + + +++ + +LP IV ++D
Sbjct: 354 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 413
Query: 253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312
WRVR + + L +G E L + L D+ +R AA + K
Sbjct: 414 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 473
Query: 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 474 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533
Query: 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 534 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/547 (59%), Positives = 416/547 (76%), Gaps = 4/547 (0%)
Query: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVL
Sbjct: 7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
LA+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL
Sbjct: 67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
++PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
S LG+FA +E ++K++I+ +F +L D+QDSVRLLAVE C + +LL +D A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
+ ++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
+FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
P+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
L M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546
Query: 541 LIPIVDQ 547
+ PI+D
Sbjct: 547 IGPILDN 553
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 88/413 (21%), Positives = 162/413 (39%), Gaps = 44/413 (10%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 234
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL +P +++ A + + R F + P+I KT+L + L +D
Sbjct: 235 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 294
Query: 176 MPMVRRSAASNLGKFAATVEP-----------------------AHLKTDIMSIFEDLT- 211
VR +A+ + +F + H+K+ + S+ L+
Sbjct: 295 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 354
Query: 212 -------------------QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD 252
+D+ VRL + + +++ + +LP IV ++D
Sbjct: 355 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 414
Query: 253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312
WRVR + + L +G E L + L D+ +R AA + K
Sbjct: 415 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 474
Query: 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 475 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 534
Query: 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 535 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 587
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/547 (59%), Positives = 416/547 (76%), Gaps = 4/547 (0%)
Query: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVL
Sbjct: 7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
LA+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL
Sbjct: 67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
++PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
S LG+FA +E ++K++I+ +F +L D+QDSVRLLAVE C + +LL +D A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
+ ++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
+FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
P+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
L M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546
Query: 541 LIPIVDQ 547
+ PI+D
Sbjct: 547 IGPILDN 553
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/413 (21%), Positives = 161/413 (38%), Gaps = 44/413 (10%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 234
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL +P +++ A + + R F + P+I KT+L + L +D
Sbjct: 235 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 294
Query: 176 MPMVRRSAASNLGKF----AATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231
VR +A+ + +F +A + T I+ ++L D V+ L
Sbjct: 295 EAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSP 354
Query: 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 291
+L + + H+LP+ + +D+ VR + + L + E +G L+PA V L D
Sbjct: 355 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 414
Query: 292 NEAEVRIA---------------------------------------AAGKVTKFCRILN 312
+ VR+A A + K
Sbjct: 415 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 474
Query: 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 475 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 534
Query: 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 535 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 587
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/547 (59%), Positives = 416/547 (76%), Gaps = 4/547 (0%)
Query: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVL
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
LA+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
++PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
S LG+FA +E ++K++I+ +F +L D+QDSVRLLAVE C + +LL +D A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
+ ++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
+FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
P+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
L M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 541 LIPIVDQ 547
+ PI+D
Sbjct: 546 IGPILDN 552
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/413 (21%), Positives = 161/413 (38%), Gaps = 44/413 (10%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL +P +++ A + + R F + P+I KT+L + L +D
Sbjct: 234 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 293
Query: 176 MPMVRRSAASNLGKF----AATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231
VR +A+ + +F +A + T I+ ++L D V+ L
Sbjct: 294 EAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSP 353
Query: 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 291
+L + + H+LP+ + +D+ VR + + L + E +G L+PA V L D
Sbjct: 354 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 413
Query: 292 NEAEVRIA---------------------------------------AAGKVTKFCRILN 312
+ VR+A A + K
Sbjct: 414 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 473
Query: 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 474 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533
Query: 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 534 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/544 (60%), Positives = 414/544 (76%), Gaps = 4/544 (0%)
Query: 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVLLA+
Sbjct: 3 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 62
Query: 68 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL ++
Sbjct: 63 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AAS L
Sbjct: 123 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 182
Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
G+FA +E ++K++I+ +F +L D+QDSVRLLAVE C + +LL +D A ++P +
Sbjct: 183 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 242
Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307
++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +F
Sbjct: 243 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 302
Query: 308 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
C L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+F
Sbjct: 303 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 362
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
L+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+PL
Sbjct: 363 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 422
Query: 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483
LA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+VL M
Sbjct: 423 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 482
Query: 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
+P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ + P
Sbjct: 483 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 542
Query: 544 IVDQ 547
I+D
Sbjct: 543 ILDN 546
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/413 (21%), Positives = 162/413 (39%), Gaps = 44/413 (10%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 168 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 227
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL +P +++ A + + R F + P+I KT+L + L +D
Sbjct: 228 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 287
Query: 176 MPMVRRSAASNLGKFAATVEP-----------------------AHLKTDIMSIFEDLT- 211
VR +A+ + +F + H+K+ + S+ L+
Sbjct: 288 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 347
Query: 212 -------------------QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD 252
+D+ VRL + + +++ + +LP IV ++D
Sbjct: 348 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 407
Query: 253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312
WRVR + + L +G E L + L D+ +R AA + K
Sbjct: 408 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 467
Query: 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 468 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 527
Query: 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 528 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 580
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/544 (60%), Positives = 414/544 (76%), Gaps = 4/544 (0%)
Query: 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVLLA+
Sbjct: 1 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60
Query: 68 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL ++
Sbjct: 61 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AAS L
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 180
Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
G+FA +E ++K++I+ +F +L D+QDSVRLLAVE C + +LL +D A ++P +
Sbjct: 181 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 240
Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307
++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +F
Sbjct: 241 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 300
Query: 308 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
C L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+F
Sbjct: 301 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 360
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
L+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+PL
Sbjct: 361 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 420
Query: 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483
LA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+VL M
Sbjct: 421 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 480
Query: 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
+P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ + P
Sbjct: 481 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 540
Query: 544 IVDQ 547
I+D
Sbjct: 541 ILDN 544
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/413 (21%), Positives = 162/413 (39%), Gaps = 44/413 (10%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 166 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 225
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL +P +++ A + + R F + P+I KT+L + L +D
Sbjct: 226 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 285
Query: 176 MPMVRRSAASNLGKFAATVEP-----------------------AHLKTDIMSIFEDLT- 211
VR +A+ + +F + H+K+ + S+ L+
Sbjct: 286 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 345
Query: 212 -------------------QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD 252
+D+ VRL + + +++ + +LP IV ++D
Sbjct: 346 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 405
Query: 253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312
WRVR + + L +G E L + L D+ +R AA + K
Sbjct: 406 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 465
Query: 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 466 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 525
Query: 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 526 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 578
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/546 (58%), Positives = 403/546 (73%), Gaps = 4/546 (0%)
Query: 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVLL
Sbjct: 1 DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60
Query: 66 AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW 125
A+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL
Sbjct: 61 ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120
Query: 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAAS 185
++PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD P VRR+AAS
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAAS 180
Query: 186 NLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV 245
LG+FA +E ++K++I+ F +L D+QDSVRLLAVE C + +LL +D A + P
Sbjct: 181 KLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPT 240
Query: 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305
+ ++DKSWRVRY VA++ EL +AVGPE T+ DLVPA+ L +D EAEVR AA+ KV
Sbjct: 241 LRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVK 300
Query: 306 KFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 361
+FC L+ + + ILPC+KEL SD++QHV+SALASVI G++P+LGKD TIE LLP
Sbjct: 301 EFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLP 360
Query: 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421
+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 361 LFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYX 420
Query: 422 PLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481
PLLA QLGV FFD+KL +LC WL D VY+IR+AA +NLK+L E+FG EWA I P+VL
Sbjct: 421 PLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 480
Query: 482 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541
+P+YL+R T L I++L+ V G +IT LP V+ + D V N++FNVAK LQ +
Sbjct: 481 AXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKI 540
Query: 542 IPIVDQ 547
PI+D
Sbjct: 541 GPILDN 546
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/413 (21%), Positives = 157/413 (38%), Gaps = 44/413 (10%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 168 SDDTPXVRRAAASKLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQL 227
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL P +++ A + + R F + P+I KT+L + L +D
Sbjct: 228 LPQEDLEALVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDC 287
Query: 176 MPMVRRSAASNLGKF----AATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231
VR +A+ + +F +A + + I+ ++L D V+ L
Sbjct: 288 EAEVRAAASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSP 347
Query: 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 291
+L + + H+LP+ + +D+ VR + + L + E +G L+PA V L D
Sbjct: 348 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 407
Query: 292 NEAEVRIA---------------------------------------AAGKVTKFCRILN 312
+ VR+A A + K
Sbjct: 408 AKWRVRLAIIEYXPLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFG 467
Query: 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372
E A I+P V S D + R I ++ + G+D T + LP L D
Sbjct: 468 KEWAHATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVA 527
Query: 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 528 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 580
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 232
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/188 (54%), Positives = 136/188 (72%)
Query: 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 419
+ + + L++E +RLN I KL + +G++ LSQSLLPAIVELAED WRVRLAIIE
Sbjct: 9 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 420 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 479
Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+
Sbjct: 69 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 480 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 539
VL M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 188
Query: 540 SLIPIVDQ 547
+ PI+D
Sbjct: 189 KIGPILDN 196
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 14/231 (6%)
Query: 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD-EVLLA 66
LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ER + L+P + E +D V LA
Sbjct: 6 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLA 65
Query: 67 MAEELGVFIPYVGGVEHAHVLLPPLETLCTV----EETCVRDKAVESLCRIGSQMRESDL 122
+ E ++P + G L +LC +R+ A +L ++ + +
Sbjct: 66 IIE----YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 121
Query: 123 VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDMPMV 179
IP V ++ + R++ LF I S DI + ++ D + V
Sbjct: 122 HATIIPKVLAMSGDPNYLHRMTT--LFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 179
Query: 180 RRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230
R + A +L K ++ + L++++ I E LTQD V+ A E L
Sbjct: 180 RFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 230
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 101/229 (44%)
Query: 197 AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWR 256
+H+ +++ D +++ +RL +++ + + L + +LP IV ++D WR
Sbjct: 2 SHMSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWR 61
Query: 257 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 316
VR + + L +G E L + L D+ +R AA + K E A
Sbjct: 62 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 121
Query: 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRL 376
I+P V +S D + R I ++ + G+D T + +LP L + D +VR
Sbjct: 122 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 181
Query: 377 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425
N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 182 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 230
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
++ C A G L D V H+LP I ++ W RY A +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 266 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320
C GPEP+++ +P + L++D VR AA V + C +L PE AI +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
++ C A G L D V H+LP I ++ W RY A +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 266 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320
C GPEP+++ +P + L++D VR AA V + C +L PE AI +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
D V H+LP I ++ W RY A + C GPEP+++ +P + L++D
Sbjct: 237 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
VR AA V + C +L PE AI +
Sbjct: 295 PSVVVRDTAAWTVGRICELL-PEAAINDV 322
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
D V H+LP I ++ W RY A + C GPEP+++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
VR AA V + C +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
D V H+LP I ++ W RY A + C GPEP+++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
VR AA V + C +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
D V H+LP I ++ WR R + E GPEP ++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILE--GPEPNQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
VR A V + C +L PE AI +
Sbjct: 420 PSVVVRDTTAWTVGRICELL-PEAAINDV 447
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
D V H+LP I ++ WR R + E GPEP ++ P + L +D
Sbjct: 368 DIVPHVLPFIKEHIKNPDWRYRDAAVXAFGSILE--GPEPNQLKPLVIQAXPTLIELXKD 425
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
VR A V + C +L PE AI +
Sbjct: 426 PSVVVRDTTAWTVGRICELL-PEAAINDV 453
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 19/171 (11%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
++ C A G L D V H+LP I ++ W RY A +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 266 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311
C GPEP+++ +P + L++D VR AA V + C +L
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 74/182 (40%), Gaps = 30/182 (16%)
Query: 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
+ + I L++D +R + L I G+ER + LI L D+D V A A+
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKAL---KDEDAWVRRAAADA 68
Query: 71 LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
LG G E A + PL E+ VR A +L +IG + PL+
Sbjct: 69 LGQI-----GDERA---VEPLIKALKDEDGWVRQSAAVALGQIGDERAVE-------PLI 113
Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
K L +WF +A L I A + L L+ D+ VR+SAA LG+
Sbjct: 114 KALKDEDWFVRIAAAFALGEIGDERAVEPLIKALK--------DEDGWVRQSAADALGEI 165
Query: 191 AA 192
Sbjct: 166 GG 167
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 32/178 (17%)
Query: 167 IYTQLCQDDMPMVRRSAASNLGKFA--ATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVE 224
+Y + QDD VRR+AA LGK VEP + + L +D+ VR A +
Sbjct: 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEP---------LIKAL-KDEDAWVRRAAAD 67
Query: 225 GCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 284
ALG++ + + + P+I + W VR A L ++ + EP
Sbjct: 68 ---ALGQIGDER----AVEPLIKALKDEDGW-VRQSAAVALGQIGDERAVEP-------- 111
Query: 285 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 342
++ L+D + VRIAAA + + + E A++ ++ +K+ Q AL +
Sbjct: 112 LIKALKDEDWFVRIAAAFALGE----IGDERAVEPLIKALKDEDGWVRQSAADALGEI 165
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 30/182 (16%)
Query: 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
+ + I L++D +R + L I G+ER + LI L D+D V A A+
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKAL---KDEDAWVRRAAADA 73
Query: 71 LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
LG G E A + PL E+ VR A +L +IG + PL+
Sbjct: 74 LGQI-----GDERA---VEPLIKALKDEDGWVRQSAAVALGQIGDERA-------VEPLI 118
Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
K L +WF +A L I A + L + +D+ VR+SAA LG+
Sbjct: 119 KALKDEDWFVRIAAAFALGEIGDERAVEPL--------IKALKDEDGWVRQSAADALGEI 170
Query: 191 AA 192
Sbjct: 171 GG 172
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 166 SIYTQLCQDDMPMVRRSAASNLGKFA--ATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAV 223
+Y + QDD VRR+AA LGK VEP I ++ +D+ VR A
Sbjct: 22 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPL-----IKAL-----KDEDAWVRRAAA 71
Query: 224 EGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP 283
+ ALG++ + + + P+I + W VR A L ++ + EP
Sbjct: 72 D---ALGQIGDER----AVEPLIKALKDEDGW-VRQSAAVALGQIGDERAVEP------- 116
Query: 284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 342
++ L+D + VRIAAA + + + E A++ ++ +K+ Q AL +
Sbjct: 117 -LIKALKDEDWFVRIAAAFALGE----IGDERAVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 26/143 (18%)
Query: 276 PTRMD--LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 333
P R D V Y++ L+D+ VR AAA + K + E A++ ++ +K D
Sbjct: 13 PLRADPEKVEMYIKNLQDDSYYVRRAAAYALGK----IGDERAVEPLIKALK----DEDA 64
Query: 334 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393
VR A A + +G + +E L + LKDE VR + L Q+ ++
Sbjct: 65 WVRRAAADAL----GQIGDERAVEPL----IKALKDEDGWVRQSAAVALGQIGDERAVEP 116
Query: 394 LSQSLLPAIVELAEDRHWRVRLA 416
L ++L +D W VR+A
Sbjct: 117 LIKAL--------KDEDWFVRIA 131
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 33/167 (19%)
Query: 289 LRDNEAEVRIAAAGKVTKFCR---ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 345
L D A VR A + C+ I +P++ Q + D S +VR A A I
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-----DKSTNVRRATAFAI-- 152
Query: 346 MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405
++ ATI P+ ++LLKD DVR N + +N+ D+ VE
Sbjct: 153 --SVINDKATI----PLLINLLKDPNGDVR-NWAAFAININKYDNSDIRD-----CFVEX 200
Query: 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQWLQDKVY 450
+D++ VR+ I +G+ + DK L LC + ++ VY
Sbjct: 201 LQDKNEEVRIEAI---------IGLSYRKDKRVLSVLCDELKKNTVY 238
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 26 RLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAH 85
R+ +IR+LS +RA G + R+EL+ L ++D+ LL +A F+ E H
Sbjct: 34 RVETIRKLSKSSRA-GNDANRQELLTTLQNLSNDE---LLPVARAFSQFLNLANTAEQYH 89
Query: 86 VLLPPLETLCTVE 98
+ P E E
Sbjct: 90 SISPKGEAASNPE 102
>pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|B Chain B, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|C Chain C, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
Length = 304
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 303 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex With Its Binding Site
On Zap-70
Length = 305
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 303 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|1YVH|A Chain A, Crystal Structure Of The C-Cbl Tkb Domain In Complex With
The Aps Ptyr-618 Phosphopeptide
pdb|3BUM|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty2
pdb|3BUN|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty4
pdb|3BUO|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUO|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUW|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUW|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUX|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3BUX|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3OB1|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Spry2 Peptide
pdb|3OB2|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Egfr Peptide
pdb|3PLF|B Chain B, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
pdb|3PLF|D Chain D, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
Length = 329
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 303 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 43 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 90
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 303 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 303 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 303 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 21 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 68
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 303 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 21 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,560,670
Number of Sequences: 62578
Number of extensions: 639176
Number of successful extensions: 2174
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1897
Number of HSP's gapped (non-prelim): 64
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)