Query 006898
Match_columns 626
No_of_seqs 288 out of 2664
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 16:04:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 8.6E-49 1.9E-53 400.4 40.3 583 6-598 79-670 (759)
2 KOG0211 Protein phosphatase 2A 100.0 1.5E-31 3.2E-36 274.3 36.4 486 19-504 169-664 (759)
3 KOG2171 Karyopherin (importin) 100.0 2.4E-28 5.2E-33 252.2 51.5 542 9-559 4-612 (1075)
4 KOG2171 Karyopherin (importin) 100.0 7.5E-28 1.6E-32 248.5 50.6 577 11-597 120-919 (1075)
5 KOG2023 Nuclear transport rece 100.0 2.1E-28 4.5E-33 236.3 32.2 523 56-594 99-734 (885)
6 KOG2023 Nuclear transport rece 100.0 2.6E-25 5.7E-30 215.0 33.6 555 11-572 130-806 (885)
7 KOG1241 Karyopherin (importin) 99.9 7.9E-22 1.7E-26 194.4 45.6 555 11-568 131-794 (859)
8 KOG1824 TATA-binding protein-i 99.9 4.7E-23 1E-27 206.8 37.5 559 9-572 6-711 (1233)
9 KOG0213 Splicing factor 3b, su 99.9 6E-22 1.3E-26 193.9 40.7 537 19-572 451-1054(1172)
10 KOG0213 Splicing factor 3b, su 99.9 9.9E-22 2.1E-26 192.4 40.1 537 18-572 485-1131(1172)
11 KOG1241 Karyopherin (importin) 99.9 9.2E-21 2E-25 187.0 39.4 591 16-614 63-758 (859)
12 PLN03200 cellulose synthase-in 99.9 1.4E-19 3E-24 202.6 48.9 562 9-591 99-763 (2102)
13 PLN03200 cellulose synthase-in 99.9 6.6E-20 1.4E-24 205.2 45.8 550 9-572 189-798 (2102)
14 COG5181 HSH155 U2 snRNP splice 99.9 6.2E-20 1.4E-24 176.5 35.6 547 10-572 169-859 (975)
15 COG5181 HSH155 U2 snRNP splice 99.9 2.5E-19 5.3E-24 172.5 38.2 537 18-572 290-936 (975)
16 KOG1242 Protein containing ada 99.9 1.5E-18 3.3E-23 169.7 38.2 471 96-572 27-512 (569)
17 PF01602 Adaptin_N: Adaptin N 99.9 4.7E-19 1E-23 187.2 38.1 498 21-542 18-523 (526)
18 PF01602 Adaptin_N: Adaptin N 99.9 1.2E-18 2.6E-23 184.2 36.8 472 86-590 42-522 (526)
19 KOG1242 Protein containing ada 99.9 3.4E-18 7.3E-23 167.3 36.3 515 50-572 19-553 (569)
20 KOG1824 TATA-binding protein-i 99.9 1.6E-17 3.5E-22 167.6 41.2 508 58-566 16-624 (1233)
21 COG5215 KAP95 Karyopherin (imp 99.8 4.2E-15 9.2E-20 142.5 46.2 500 22-523 147-732 (858)
22 PRK13800 putative oxidoreducta 99.8 3E-18 6.5E-23 188.4 28.0 275 203-540 622-896 (897)
23 PRK09687 putative lyase; Provi 99.8 1.8E-18 3.9E-23 162.2 21.0 252 282-588 25-278 (280)
24 PRK09687 putative lyase; Provi 99.8 5.8E-18 1.3E-22 158.7 23.7 253 165-462 25-279 (280)
25 PRK13800 putative oxidoreducta 99.8 2.7E-18 5.9E-23 188.7 24.5 275 242-589 622-896 (897)
26 COG5215 KAP95 Karyopherin (imp 99.8 8.3E-15 1.8E-19 140.6 43.1 384 56-468 14-440 (858)
27 PTZ00429 beta-adaptin; Provisi 99.8 7.8E-15 1.7E-19 153.9 45.7 491 10-572 33-535 (746)
28 KOG0915 Uncharacterized conser 99.8 3.8E-16 8.3E-21 165.5 31.2 520 56-591 827-1426(1702)
29 KOG0212 Uncharacterized conser 99.8 5E-16 1.1E-20 148.8 28.1 391 168-559 5-422 (675)
30 KOG0212 Uncharacterized conser 99.8 4.1E-15 8.9E-20 142.6 34.2 415 93-509 7-449 (675)
31 PTZ00429 beta-adaptin; Provisi 99.7 1.1E-12 2.4E-17 137.8 47.3 475 2-504 61-546 (746)
32 KOG0915 Uncharacterized conser 99.7 4.4E-13 9.5E-18 142.8 41.3 443 100-544 971-1470(1702)
33 KOG1240 Protein kinase contain 99.7 1.6E-15 3.5E-20 157.3 21.4 282 176-470 436-730 (1431)
34 KOG1240 Protein kinase contain 99.7 2.8E-15 6.1E-20 155.5 21.6 302 203-517 423-738 (1431)
35 KOG0166 Karyopherin (importin) 99.7 1.8E-13 4E-18 133.7 29.2 336 210-545 74-438 (514)
36 KOG4224 Armadillo repeat prote 99.6 6.8E-13 1.5E-17 120.9 24.4 376 9-388 47-447 (550)
37 KOG0166 Karyopherin (importin) 99.6 2.5E-12 5.5E-17 125.9 27.2 377 166-542 69-485 (514)
38 KOG1060 Vesicle coat complex A 99.5 3.1E-10 6.7E-15 113.8 37.5 486 12-534 38-562 (968)
39 KOG1943 Beta-tubulin folding c 99.5 1.4E-09 3E-14 113.3 38.8 458 84-544 339-882 (1133)
40 PF10508 Proteasom_PSMB: Prote 99.4 6.7E-10 1.4E-14 114.4 34.3 364 207-572 43-451 (503)
41 PF10508 Proteasom_PSMB: Prote 99.4 1.5E-09 3.2E-14 111.9 36.5 298 130-427 43-367 (503)
42 KOG1943 Beta-tubulin folding c 99.4 4.2E-08 9.1E-13 102.6 46.2 422 160-591 338-836 (1133)
43 KOG4224 Armadillo repeat prote 99.4 2.4E-11 5.1E-16 111.0 20.1 382 163-545 85-495 (550)
44 COG5240 SEC21 Vesicle coat com 99.4 2.2E-09 4.8E-14 104.1 33.5 463 14-503 70-554 (898)
45 KOG1060 Vesicle coat complex A 99.4 1.2E-09 2.6E-14 109.7 30.6 164 325-504 293-458 (968)
46 KOG1061 Vesicle coat complex A 99.4 1.7E-09 3.8E-14 109.3 29.6 421 131-572 92-517 (734)
47 KOG1991 Nuclear transport rece 99.3 2.2E-07 4.8E-12 96.6 44.6 450 48-535 5-568 (1010)
48 COG5064 SRP1 Karyopherin (impo 99.3 1.4E-10 2.9E-15 105.2 19.0 330 242-572 115-485 (526)
49 COG5240 SEC21 Vesicle coat com 99.3 1.5E-08 3.3E-13 98.4 31.9 470 85-591 64-554 (898)
50 COG1413 FOG: HEAT repeat [Ener 99.3 3.4E-09 7.4E-14 104.8 26.6 248 163-464 43-303 (335)
51 COG1413 FOG: HEAT repeat [Ener 99.3 2.6E-09 5.6E-14 105.6 25.6 277 202-540 43-332 (335)
52 KOG1020 Sister chromatid cohes 99.2 9.4E-07 2E-11 95.8 43.2 509 12-546 819-1408(1692)
53 KOG1243 Protein kinase [Genera 99.2 4.5E-10 9.7E-15 112.4 17.5 255 331-597 266-520 (690)
54 KOG1020 Sister chromatid cohes 99.2 2.4E-06 5.1E-11 92.8 43.9 487 91-591 821-1404(1692)
55 KOG2259 Uncharacterized conser 99.2 2E-08 4.3E-13 99.3 26.3 392 56-468 88-514 (823)
56 KOG2259 Uncharacterized conser 99.2 3.4E-08 7.4E-13 97.7 27.8 212 281-501 199-472 (823)
57 KOG1062 Vesicle coat complex A 99.2 2.9E-07 6.2E-12 93.6 34.5 389 56-459 116-575 (866)
58 TIGR02270 conserved hypothetic 99.2 8.5E-09 1.8E-13 101.7 23.3 239 165-464 56-295 (410)
59 KOG1248 Uncharacterized conser 99.2 6.4E-06 1.4E-10 87.8 45.5 506 57-572 322-887 (1176)
60 TIGR02270 conserved hypothetic 99.2 1.2E-08 2.5E-13 100.8 23.7 240 203-503 55-295 (410)
61 COG5064 SRP1 Karyopherin (impo 99.1 7.2E-10 1.5E-14 100.6 13.1 265 318-592 113-398 (526)
62 KOG1059 Vesicle coat complex A 99.1 4.5E-06 9.7E-11 84.0 40.2 400 122-540 141-574 (877)
63 KOG1062 Vesicle coat complex A 99.1 1.5E-06 3.3E-11 88.4 36.7 386 140-536 119-574 (866)
64 KOG1061 Vesicle coat complex A 99.1 1.1E-07 2.3E-12 96.7 28.3 510 5-546 9-571 (734)
65 KOG1059 Vesicle coat complex A 99.1 6.8E-06 1.5E-10 82.7 39.4 230 149-387 130-365 (877)
66 KOG1078 Vesicle coat complex C 99.1 3.4E-06 7.4E-11 85.7 35.7 457 51-542 68-531 (865)
67 PF12348 CLASP_N: CLASP N term 99.0 5.6E-09 1.2E-13 96.9 15.1 187 397-596 7-210 (228)
68 KOG4535 HEAT and armadillo rep 99.0 1.1E-07 2.4E-12 90.7 23.4 446 99-590 9-601 (728)
69 KOG1243 Protein kinase [Genera 99.0 6.8E-09 1.5E-13 104.1 16.1 256 290-547 264-519 (690)
70 KOG1078 Vesicle coat complex C 99.0 1.8E-06 3.9E-11 87.7 32.9 458 14-503 69-531 (865)
71 KOG1077 Vesicle coat complex A 99.0 1.4E-05 3.1E-10 80.2 38.0 448 56-539 120-583 (938)
72 PF12348 CLASP_N: CLASP N term 99.0 4.9E-08 1.1E-12 90.6 20.2 183 285-470 12-211 (228)
73 KOG1248 Uncharacterized conser 99.0 6.7E-05 1.4E-09 80.4 43.8 477 28-510 369-904 (1176)
74 KOG1992 Nuclear export recepto 99.0 5.4E-06 1.2E-10 84.7 34.3 521 19-547 15-672 (960)
75 KOG1058 Vesicle coat complex C 99.0 5.9E-06 1.3E-10 83.5 33.0 429 10-504 21-463 (948)
76 COG5096 Vesicle coat complex, 98.9 4E-05 8.6E-10 80.0 39.4 167 18-193 28-196 (757)
77 COG5096 Vesicle coat complex, 98.9 9.8E-06 2.1E-10 84.4 33.2 143 161-310 53-196 (757)
78 KOG1991 Nuclear transport rece 98.8 0.00028 6.1E-09 74.3 44.7 438 19-470 14-578 (1010)
79 PF12460 MMS19_C: RNAPII trans 98.8 1.7E-05 3.6E-10 80.4 31.8 199 359-559 190-412 (415)
80 KOG2274 Predicted importin 9 [ 98.8 0.00037 8.1E-09 72.6 42.2 561 10-591 5-688 (1005)
81 KOG4535 HEAT and armadillo rep 98.8 1.3E-05 2.8E-10 77.0 26.4 292 216-507 269-606 (728)
82 KOG1820 Microtubule-associated 98.7 2.1E-06 4.5E-11 91.0 22.4 195 351-549 246-449 (815)
83 KOG1820 Microtubule-associated 98.7 1.4E-05 3E-10 84.8 26.6 188 279-470 252-448 (815)
84 KOG1077 Vesicle coat complex A 98.6 0.00079 1.7E-08 68.2 36.6 437 12-463 114-585 (938)
85 KOG1058 Vesicle coat complex C 98.6 0.0004 8.6E-09 70.8 33.3 323 205-547 102-429 (948)
86 PF12460 MMS19_C: RNAPII trans 98.6 0.00015 3.2E-09 73.5 31.2 286 99-386 56-393 (415)
87 KOG0413 Uncharacterized conser 98.6 0.00071 1.5E-08 70.8 34.7 477 87-590 473-1071(1529)
88 KOG0413 Uncharacterized conser 98.6 0.00028 6.1E-09 73.7 31.6 430 123-559 574-1089(1529)
89 KOG2137 Protein kinase [Signal 98.6 4.1E-06 9E-11 85.0 18.1 238 331-572 285-526 (700)
90 KOG1992 Nuclear export recepto 98.5 0.00032 6.8E-09 72.3 30.1 470 46-596 4-531 (960)
91 KOG0567 HEAT repeat-containing 98.5 1.8E-05 4E-10 70.3 18.7 237 243-543 38-280 (289)
92 PF05804 KAP: Kinesin-associat 98.5 0.0002 4.4E-09 75.5 29.9 365 170-544 257-650 (708)
93 PF12755 Vac14_Fab1_bd: Vacuol 98.5 7.5E-07 1.6E-11 68.3 8.9 88 453-541 3-94 (97)
94 PF05804 KAP: Kinesin-associat 98.5 0.00088 1.9E-08 70.8 34.4 369 205-592 253-649 (708)
95 PF12755 Vac14_Fab1_bd: Vacuol 98.5 8.8E-07 1.9E-11 67.9 8.3 88 218-306 2-93 (97)
96 KOG2137 Protein kinase [Signal 98.5 2E-05 4.4E-10 80.2 20.0 238 292-532 285-526 (700)
97 KOG1967 DNA repair/transcripti 98.5 0.0032 7E-08 66.1 40.4 148 396-543 866-1024(1030)
98 PF04826 Arm_2: Armadillo-like 98.5 2E-05 4.2E-10 72.7 18.2 180 330-509 24-210 (254)
99 KOG0414 Chromosome condensatio 98.4 0.0047 1E-07 66.8 41.0 138 428-572 911-1053(1251)
100 KOG2274 Predicted importin 9 [ 98.4 0.0038 8.2E-08 65.4 41.3 232 292-524 462-718 (1005)
101 KOG2062 26S proteasome regulat 98.4 0.00024 5.2E-09 72.2 26.2 278 145-452 399-681 (929)
102 PF13646 HEAT_2: HEAT repeats; 98.4 2E-06 4.3E-11 66.1 8.3 26 321-346 33-58 (88)
103 KOG2032 Uncharacterized conser 98.4 0.0025 5.4E-08 62.2 30.5 248 202-464 258-530 (533)
104 KOG2025 Chromosome condensatio 98.4 0.00023 4.9E-09 72.1 24.0 169 160-343 82-254 (892)
105 KOG1822 Uncharacterized conser 98.4 0.002 4.3E-08 72.7 33.0 457 144-612 803-1403(2067)
106 KOG4653 Uncharacterized conser 98.3 0.0001 2.2E-09 76.2 21.5 215 326-546 734-967 (982)
107 PF12717 Cnd1: non-SMC mitotic 98.3 6.6E-05 1.4E-09 66.1 17.8 72 398-470 26-97 (178)
108 PF13646 HEAT_2: HEAT repeats; 98.3 5.8E-06 1.3E-10 63.5 9.9 85 322-422 2-88 (88)
109 KOG4413 26S proteasome regulat 98.3 0.0018 3.8E-08 59.7 26.5 243 105-350 62-335 (524)
110 cd00020 ARM Armadillo/beta-cat 98.3 5E-06 1.1E-10 68.3 9.8 107 436-542 7-119 (120)
111 PF12717 Cnd1: non-SMC mitotic 98.3 5.4E-05 1.2E-09 66.6 16.7 112 99-212 1-112 (178)
112 KOG0168 Putative ubiquitin fus 98.3 0.00065 1.4E-08 70.3 25.8 186 10-196 168-368 (1051)
113 KOG2062 26S proteasome regulat 98.3 6.2E-05 1.3E-09 76.3 18.4 293 20-346 353-651 (929)
114 KOG0567 HEAT repeat-containing 98.3 0.00017 3.6E-09 64.3 18.9 84 170-269 43-128 (289)
115 PF04826 Arm_2: Armadillo-like 98.2 5.9E-05 1.3E-09 69.6 16.1 184 168-351 17-208 (254)
116 KOG1293 Proteins containing ar 98.2 0.0032 6.9E-08 63.7 28.9 126 446-572 387-522 (678)
117 KOG1293 Proteins containing ar 98.2 0.0082 1.8E-07 60.9 36.1 105 12-118 12-128 (678)
118 KOG0168 Putative ubiquitin fus 98.2 0.00084 1.8E-08 69.5 25.2 187 164-351 169-367 (1051)
119 COG5218 YCG1 Chromosome conden 98.2 0.0077 1.7E-07 60.1 31.0 172 199-384 88-263 (885)
120 cd00020 ARM Armadillo/beta-cat 98.2 9.8E-06 2.1E-10 66.6 9.8 107 397-503 7-119 (120)
121 PF05918 API5: Apoptosis inhib 98.2 0.00036 7.8E-09 70.8 22.1 282 138-427 35-346 (556)
122 KOG2032 Uncharacterized conser 98.2 0.0023 5E-08 62.5 25.5 281 138-425 230-530 (533)
123 KOG4653 Uncharacterized conser 98.2 0.00036 7.9E-09 72.3 21.3 207 249-466 735-965 (982)
124 KOG2025 Chromosome condensatio 98.2 0.00022 4.8E-09 72.1 19.3 185 107-306 63-256 (892)
125 PF05004 IFRD: Interferon-rela 98.1 0.00079 1.7E-08 64.7 21.7 204 364-568 49-287 (309)
126 PF05918 API5: Apoptosis inhib 98.1 0.00026 5.6E-09 71.8 17.9 54 485-539 278-337 (556)
127 PF13001 Ecm29: Proteasome sta 98.1 0.0025 5.4E-08 66.0 25.4 222 280-504 237-488 (501)
128 KOG4413 26S proteasome regulat 98.1 0.0062 1.3E-07 56.2 24.4 303 239-544 80-440 (524)
129 KOG2956 CLIP-associating prote 98.0 0.00039 8.6E-09 67.1 17.6 196 126-329 288-493 (516)
130 KOG1993 Nuclear transport rece 98.0 0.026 5.7E-07 58.6 37.4 192 393-596 484-689 (978)
131 PF13513 HEAT_EZ: HEAT-like re 98.0 1E-05 2.2E-10 55.4 4.4 53 489-541 1-55 (55)
132 KOG0392 SNF2 family DNA-depend 98.0 0.042 9.1E-07 60.1 32.1 149 85-233 76-239 (1549)
133 KOG1967 DNA repair/transcripti 98.0 0.00031 6.7E-09 73.3 16.0 147 119-265 861-1019(1030)
134 PF05004 IFRD: Interferon-rela 97.9 0.0018 3.9E-08 62.2 20.4 58 332-389 199-259 (309)
135 KOG2956 CLIP-associating prote 97.9 0.0012 2.7E-08 63.8 18.7 188 161-353 285-482 (516)
136 COG5218 YCG1 Chromosome conden 97.9 0.04 8.6E-07 55.3 33.2 167 10-189 92-263 (885)
137 KOG0414 Chromosome condensatio 97.8 0.079 1.7E-06 57.8 37.9 150 350-505 911-1065(1251)
138 PF14500 MMS19_N: Dos2-interac 97.8 0.0074 1.6E-07 56.3 21.0 221 91-315 4-243 (262)
139 PF13513 HEAT_EZ: HEAT-like re 97.8 9.6E-05 2.1E-09 50.5 6.1 53 333-385 1-55 (55)
140 COG5116 RPN2 26S proteasome re 97.8 0.0012 2.7E-08 65.2 15.6 155 166-333 519-676 (926)
141 PF13001 Ecm29: Proteasome sta 97.7 0.013 2.8E-07 60.9 24.1 184 358-548 237-448 (501)
142 PLN03076 ARF guanine nucleotid 97.7 0.093 2E-06 61.8 32.4 273 198-470 1133-1494(1780)
143 KOG1949 Uncharacterized conser 97.7 0.054 1.2E-06 55.6 25.7 143 242-385 175-329 (1005)
144 KOG1525 Sister chromatid cohes 97.7 0.015 3.2E-07 65.4 24.2 290 94-388 58-406 (1266)
145 COG5656 SXM1 Importin, protein 97.7 0.1 2.2E-06 54.1 38.3 143 396-538 407-566 (970)
146 KOG1525 Sister chromatid cohes 97.7 0.032 7E-07 62.8 26.7 146 396-544 258-406 (1266)
147 COG5116 RPN2 26S proteasome re 97.6 0.0074 1.6E-07 59.9 17.8 277 147-449 395-675 (926)
148 PF02985 HEAT: HEAT repeat; I 97.5 0.00018 3.8E-09 42.1 4.0 29 164-192 1-29 (31)
149 PF02985 HEAT: HEAT repeat; I 97.5 0.00023 4.9E-09 41.6 4.1 28 438-465 2-29 (31)
150 KOG1517 Guanine nucleotide bin 97.5 0.0026 5.6E-08 67.6 14.3 222 46-270 470-732 (1387)
151 PF14500 MMS19_N: Dos2-interac 97.5 0.071 1.5E-06 49.8 22.5 149 208-360 5-165 (262)
152 KOG1851 Uncharacterized conser 97.4 0.34 7.5E-06 54.7 31.1 151 396-548 1525-1683(1710)
153 PF12719 Cnd3: Nuclear condens 97.4 0.054 1.2E-06 52.3 22.4 159 209-369 34-208 (298)
154 KOG1949 Uncharacterized conser 97.4 0.012 2.7E-07 59.9 17.9 142 322-464 177-330 (1005)
155 KOG2933 Uncharacterized conser 97.4 0.0065 1.4E-07 55.9 14.3 168 398-572 89-266 (334)
156 PLN03076 ARF guanine nucleotid 97.4 0.29 6.3E-06 57.9 30.3 290 219-508 1109-1493(1780)
157 PF11864 DUF3384: Domain of un 97.3 0.28 6.1E-06 50.6 30.9 125 298-429 195-334 (464)
158 COG5098 Chromosome condensatio 97.3 0.29 6.4E-06 50.4 43.4 148 428-591 884-1036(1128)
159 KOG2933 Uncharacterized conser 97.3 0.0081 1.8E-07 55.3 13.2 172 203-379 89-269 (334)
160 PF01347 Vitellogenin_N: Lipop 97.2 0.093 2E-06 56.9 23.5 202 162-385 362-587 (618)
161 PF01347 Vitellogenin_N: Lipop 97.1 0.031 6.7E-07 60.6 18.4 159 396-572 430-611 (618)
162 smart00638 LPD_N Lipoprotein N 97.1 0.044 9.5E-07 58.7 18.9 159 396-572 392-567 (574)
163 PF08506 Cse1: Cse1; InterPro 97.0 0.035 7.6E-07 54.8 16.5 126 449-587 224-370 (370)
164 KOG1517 Guanine nucleotide bin 97.0 0.015 3.3E-07 62.1 14.1 208 140-347 485-731 (1387)
165 PF12719 Cnd3: Nuclear condens 97.0 0.071 1.5E-06 51.5 17.8 159 364-526 33-209 (298)
166 KOG0946 ER-Golgi vesicle-tethe 96.9 0.69 1.5E-05 48.6 33.4 222 126-347 123-398 (970)
167 PF13251 DUF4042: Domain of un 96.9 0.014 3.1E-07 50.6 11.2 147 102-271 2-175 (182)
168 KOG2213 Apoptosis inhibitor 5/ 96.8 0.41 9E-06 45.9 20.3 112 140-256 39-166 (460)
169 PF08506 Cse1: Cse1; InterPro 96.8 0.15 3.3E-06 50.4 18.4 124 372-498 225-369 (370)
170 PF13251 DUF4042: Domain of un 96.7 0.02 4.2E-07 49.8 10.6 130 89-234 43-177 (182)
171 smart00638 LPD_N Lipoprotein N 96.7 0.24 5.1E-06 53.1 21.0 165 358-538 393-573 (574)
172 PF10363 DUF2435: Protein of u 96.5 0.026 5.7E-07 42.8 8.8 80 166-250 6-86 (92)
173 PF12054 DUF3535: Domain of un 96.5 0.39 8.4E-06 48.9 19.5 94 100-193 101-209 (441)
174 KOG2011 Sister chromatid cohes 96.5 0.24 5.3E-06 54.2 18.7 227 63-305 171-431 (1048)
175 PF11865 DUF3385: Domain of un 96.4 0.045 9.7E-07 46.9 10.6 138 318-466 9-158 (160)
176 PF10363 DUF2435: Protein of u 96.4 0.056 1.2E-06 41.1 9.8 82 402-488 8-90 (92)
177 KOG2011 Sister chromatid cohes 96.4 1.1 2.3E-05 49.5 22.6 130 406-540 296-432 (1048)
178 PF10274 ParcG: Parkin co-regu 96.3 0.029 6.3E-07 48.3 8.9 68 435-502 37-107 (183)
179 KOG0392 SNF2 family DNA-depend 96.3 0.18 3.9E-06 55.6 16.4 175 372-547 143-329 (1549)
180 PF12530 DUF3730: Protein of u 96.3 0.92 2E-05 41.9 21.8 168 170-346 8-187 (234)
181 PF12074 DUF3554: Domain of un 96.3 0.78 1.7E-05 45.3 20.2 87 141-231 3-90 (339)
182 KOG1822 Uncharacterized conser 96.3 3.5 7.5E-05 48.2 38.0 229 120-348 871-1127(2067)
183 cd00256 VATPase_H VATPase_H, r 96.2 1.6 3.4E-05 43.9 24.3 69 475-543 353-425 (429)
184 KOG2160 Armadillo/beta-catenin 96.2 0.38 8.3E-06 45.8 16.1 99 19-119 93-200 (342)
185 PF12530 DUF3730: Protein of u 96.2 1 2.2E-05 41.7 19.0 55 174-230 95-150 (234)
186 KOG2021 Nuclear mRNA export fa 96.0 2.5 5.4E-05 44.5 38.9 454 99-559 206-782 (980)
187 KOG2973 Uncharacterized conser 96.0 1.4 3.1E-05 41.1 18.1 49 524-572 254-304 (353)
188 PF08569 Mo25: Mo25-like; Int 95.9 1.2 2.5E-05 43.4 18.5 186 353-544 71-284 (335)
189 KOG0891 DNA-dependent protein 95.9 6.8 0.00015 48.1 32.6 244 17-269 489-762 (2341)
190 PF10274 ParcG: Parkin co-regu 95.8 0.23 5E-06 42.9 11.9 75 396-470 37-117 (183)
191 KOG1993 Nuclear transport rece 95.6 3.8 8.2E-05 43.5 27.2 211 47-258 487-716 (978)
192 cd08050 TAF6 TATA Binding Prot 95.6 0.34 7.3E-06 47.6 13.9 131 367-504 187-340 (343)
193 cd00256 VATPase_H VATPase_H, r 95.6 3 6.5E-05 41.9 28.8 194 106-309 54-258 (429)
194 PF14664 RICTOR_N: Rapamycin-i 95.5 2.9 6.2E-05 41.6 20.9 225 320-544 26-270 (371)
195 PF01603 B56: Protein phosphat 95.5 2.7 5.9E-05 42.6 20.3 251 329-591 100-369 (409)
196 KOG2160 Armadillo/beta-catenin 95.3 2.7 5.8E-05 40.3 18.1 173 175-347 95-281 (342)
197 KOG1851 Uncharacterized conser 95.3 7.3 0.00016 44.9 30.5 156 315-471 1522-1684(1710)
198 PF12231 Rif1_N: Rap1-interact 95.2 3.8 8.2E-05 41.0 27.2 189 333-544 148-353 (372)
199 COG5098 Chromosome condensatio 95.0 5.5 0.00012 41.6 32.6 106 165-270 301-415 (1128)
200 PF04118 Dopey_N: Dopey, N-ter 94.8 4.1 8.8E-05 39.1 19.1 179 359-543 55-254 (307)
201 PF12054 DUF3535: Domain of un 94.7 1.3 2.8E-05 45.1 15.3 76 139-214 101-180 (441)
202 KOG4524 Uncharacterized conser 94.6 7.2 0.00016 42.6 20.8 91 396-486 802-900 (1014)
203 cd08050 TAF6 TATA Binding Prot 94.6 0.71 1.5E-05 45.4 13.0 140 162-308 177-339 (343)
204 KOG2213 Apoptosis inhibitor 5/ 94.6 4.7 0.0001 39.0 19.6 68 177-250 38-105 (460)
205 KOG2759 Vacuolar H+-ATPase V1 94.6 5.1 0.00011 39.3 29.4 119 105-232 65-187 (442)
206 PF03378 CAS_CSE1: CAS/CSE pro 94.5 3.2 7E-05 42.2 17.7 192 239-432 69-278 (435)
207 PF14664 RICTOR_N: Rapamycin-i 94.5 5.7 0.00012 39.5 23.1 215 171-391 34-273 (371)
208 COG5234 CIN1 Beta-tubulin fold 94.5 7.5 0.00016 40.7 22.8 68 392-464 686-757 (993)
209 PF11864 DUF3384: Domain of un 94.5 7.1 0.00015 40.5 33.4 279 22-308 3-329 (464)
210 PF05536 Neurochondrin: Neuroc 94.4 7.9 0.00017 40.8 29.4 177 217-394 72-268 (543)
211 PF10521 DUF2454: Protein of u 94.4 1.3 2.8E-05 42.4 13.8 35 280-314 119-153 (282)
212 KOG0891 DNA-dependent protein 94.3 18 0.0004 44.6 35.6 250 56-308 490-762 (2341)
213 PF11701 UNC45-central: Myosin 94.3 0.26 5.7E-06 42.1 8.1 130 97-227 16-155 (157)
214 PF12074 DUF3554: Domain of un 94.2 5.6 0.00012 39.3 18.6 74 488-563 175-253 (339)
215 PF11865 DUF3385: Domain of un 94.2 0.68 1.5E-05 39.7 10.4 140 162-310 9-158 (160)
216 PF07571 DUF1546: Protein of u 94.1 0.21 4.6E-06 38.0 6.4 69 447-519 17-89 (92)
217 PF04118 Dopey_N: Dopey, N-ter 94.0 6 0.00013 38.0 18.4 174 204-383 56-250 (307)
218 COG5656 SXM1 Importin, protein 93.9 10 0.00022 40.2 33.5 354 145-499 390-796 (970)
219 PF08713 DNA_alkylation: DNA a 93.9 1.2 2.5E-05 40.7 12.3 131 126-270 52-184 (213)
220 PF08167 RIX1: rRNA processing 93.8 2.2 4.8E-05 36.9 13.0 110 124-235 24-147 (165)
221 COG5095 TAF6 Transcription ini 93.8 5.6 0.00012 37.0 15.6 55 450-504 301-359 (450)
222 KOG2549 Transcription initiati 93.7 3.3 7.1E-05 42.1 15.2 71 434-504 286-370 (576)
223 PF03378 CAS_CSE1: CAS/CSE pro 93.6 9.7 0.00021 38.8 21.5 193 160-355 68-279 (435)
224 KOG2022 Nuclear transport rece 93.4 13 0.00029 40.2 33.0 172 218-394 440-626 (982)
225 PF10521 DUF2454: Protein of u 93.4 2.4 5.2E-05 40.5 13.8 37 199-235 116-152 (282)
226 PF01603 B56: Protein phosphat 93.4 10 0.00022 38.5 23.7 251 250-504 99-370 (409)
227 KOG2081 Nuclear transport regu 92.7 13 0.00029 38.0 36.0 354 161-548 61-462 (559)
228 PF03224 V-ATPase_H_N: V-ATPas 92.6 11 0.00023 36.8 18.5 140 366-507 113-272 (312)
229 KOG4500 Rho/Rac GTPase guanine 92.6 12 0.00025 37.1 33.1 406 56-466 51-520 (604)
230 PF12830 Nipped-B_C: Sister ch 92.5 0.43 9.4E-06 42.3 6.8 73 473-547 6-78 (187)
231 KOG0889 Histone acetyltransfer 92.4 32 0.0007 43.7 23.2 162 435-606 983-1169(3550)
232 PF08167 RIX1: rRNA processing 92.4 3 6.5E-05 36.1 11.7 120 396-547 24-147 (165)
233 PF08389 Xpo1: Exportin 1-like 92.1 2.4 5.2E-05 35.8 10.9 141 177-343 2-148 (148)
234 PF00514 Arm: Armadillo/beta-c 91.9 0.3 6.6E-06 30.5 3.8 30 513-542 11-40 (41)
235 KOG2021 Nuclear mRNA export fa 91.8 20 0.00044 38.2 42.8 147 373-523 414-585 (980)
236 PF14868 DUF4487: Domain of un 91.8 19 0.00041 37.8 23.4 52 144-195 247-298 (559)
237 KOG2022 Nuclear transport rece 91.8 22 0.00048 38.6 35.9 339 200-547 460-871 (982)
238 KOG2038 CAATT-binding transcri 91.7 21 0.00045 38.1 22.5 124 318-445 303-428 (988)
239 KOG2549 Transcription initiati 91.5 2.8 6.1E-05 42.5 11.6 141 162-309 206-370 (576)
240 KOG3678 SARM protein (with ste 91.5 12 0.00026 37.2 15.5 145 360-504 182-336 (832)
241 KOG2149 Uncharacterized conser 91.3 1.9 4.2E-05 41.9 10.1 108 441-548 63-175 (393)
242 PF08161 NUC173: NUC173 domain 91.2 7.6 0.00017 34.6 13.2 106 336-443 17-124 (198)
243 cd03568 VHS_STAM VHS domain fa 91.0 2.2 4.7E-05 35.8 9.0 75 474-548 36-115 (144)
244 COG5095 TAF6 Transcription ini 91.0 4.5 9.8E-05 37.6 11.4 53 372-426 301-359 (450)
245 KOG2973 Uncharacterized conser 91.0 14 0.00031 34.8 20.2 100 246-348 8-111 (353)
246 cd03568 VHS_STAM VHS domain fa 90.8 6 0.00013 33.2 11.5 74 162-235 36-114 (144)
247 PF03224 V-ATPase_H_N: V-ATPas 90.8 8.5 0.00018 37.5 14.4 67 203-269 106-178 (312)
248 KOG0803 Predicted E3 ubiquitin 90.7 34 0.00074 39.8 20.3 93 214-306 53-150 (1312)
249 KOG2149 Uncharacterized conser 90.7 2.9 6.3E-05 40.8 10.5 107 167-273 62-173 (393)
250 KOG1848 Uncharacterized conser 90.6 38 0.00082 39.0 20.1 213 135-347 852-1131(1610)
251 PF11698 V-ATPase_H_C: V-ATPas 90.4 1.1 2.5E-05 35.6 6.4 67 164-230 44-114 (119)
252 PF08389 Xpo1: Exportin 1-like 90.3 7.7 0.00017 32.6 12.3 48 489-538 100-148 (148)
253 PF00790 VHS: VHS domain; Int 90.2 5.6 0.00012 33.3 10.9 78 160-237 39-124 (140)
254 PF05536 Neurochondrin: Neuroc 90.2 28 0.0006 36.9 30.8 173 100-275 71-266 (543)
255 PF00514 Arm: Armadillo/beta-c 90.1 0.72 1.6E-05 28.8 4.3 29 436-464 12-40 (41)
256 KOG1848 Uncharacterized conser 90.1 41 0.00089 38.8 21.8 218 170-387 849-1132(1610)
257 PF11701 UNC45-central: Myosin 90.1 2.4 5.1E-05 36.3 8.7 129 411-540 19-156 (157)
258 KOG0803 Predicted E3 ubiquitin 90.1 21 0.00045 41.5 18.1 112 295-407 201-330 (1312)
259 KOG2005 26S proteasome regulat 90.1 27 0.00059 36.7 18.9 220 160-393 449-710 (878)
260 KOG2005 26S proteasome regulat 90.1 25 0.00053 37.0 16.7 281 204-504 417-704 (878)
261 COG5537 IRR1 Cohesin [Cell div 89.8 16 0.00034 37.8 15.0 131 437-572 276-411 (740)
262 KOG1048 Neural adherens juncti 89.6 32 0.0007 36.9 20.3 110 435-544 517-642 (717)
263 PF08713 DNA_alkylation: DNA a 89.6 16 0.00034 33.2 17.6 134 201-349 50-185 (213)
264 PF08161 NUC173: NUC173 domain 89.5 5.7 0.00012 35.4 10.9 60 376-435 18-79 (198)
265 PF11698 V-ATPase_H_C: V-ATPas 89.4 2.2 4.7E-05 34.1 7.2 67 437-503 44-114 (119)
266 KOG4524 Uncharacterized conser 89.2 39 0.00086 37.3 32.6 92 474-566 802-901 (1014)
267 PF12231 Rif1_N: Rap1-interact 88.6 28 0.00062 34.8 29.2 186 294-503 148-351 (372)
268 COG5101 CRM1 Importin beta-rel 88.5 35 0.00075 35.7 33.1 150 398-547 482-652 (1053)
269 PF14225 MOR2-PAG1_C: Cell mor 88.4 22 0.00048 33.4 17.2 141 437-600 112-259 (262)
270 PF12765 Cohesin_HEAT: HEAT re 88.1 0.57 1.2E-05 29.5 2.7 23 280-302 18-40 (42)
271 PF08767 CRM1_C: CRM1 C termin 88.0 28 0.0006 34.0 16.8 157 413-569 43-229 (319)
272 PF12830 Nipped-B_C: Sister ch 87.9 3.8 8.3E-05 36.3 8.8 72 396-469 7-78 (187)
273 cd03569 VHS_Hrs_Vps27p VHS dom 87.8 15 0.00033 30.7 12.1 74 162-235 40-118 (142)
274 KOG3678 SARM protein (with ste 87.7 5 0.00011 39.7 9.8 151 437-597 181-341 (832)
275 PF07571 DUF1546: Protein of u 87.6 2.3 5E-05 32.4 6.2 57 174-230 17-77 (92)
276 smart00288 VHS Domain present 87.3 15 0.00033 30.3 11.4 75 161-235 35-115 (133)
277 PF12765 Cohesin_HEAT: HEAT re 87.3 0.99 2.1E-05 28.4 3.3 24 358-381 18-41 (42)
278 smart00288 VHS Domain present 87.2 6.8 0.00015 32.4 9.3 77 474-550 36-118 (133)
279 KOG1932 TATA binding protein a 87.2 37 0.0008 38.1 16.7 90 332-425 881-979 (1180)
280 PF00790 VHS: VHS domain; Int 86.7 7.5 0.00016 32.5 9.4 83 473-555 40-130 (140)
281 cd03567 VHS_GGA VHS domain fam 86.6 17 0.00037 30.2 11.6 95 407-507 15-119 (139)
282 PF14868 DUF4487: Domain of un 86.0 50 0.0011 34.8 24.4 62 446-507 490-555 (559)
283 KOG0946 ER-Golgi vesicle-tethe 85.6 58 0.0012 35.2 34.0 74 162-235 121-199 (970)
284 PF04078 Rcd1: Cell differenti 85.2 30 0.00066 32.0 12.9 69 124-192 94-168 (262)
285 COG5537 IRR1 Cohesin [Cell div 85.1 46 0.001 34.6 15.2 106 281-387 276-386 (740)
286 KOG4500 Rho/Rac GTPase guanine 84.8 44 0.00096 33.2 30.4 148 397-544 315-476 (604)
287 KOG0889 Histone acetyltransfer 84.7 1.3E+02 0.0029 38.7 29.3 152 85-236 983-1160(3550)
288 PF08623 TIP120: TATA-binding 84.3 8.5 0.00018 33.1 8.6 61 174-235 38-98 (169)
289 PF08064 UME: UME (NUC010) dom 84.0 18 0.0004 28.5 9.9 60 293-354 28-89 (107)
290 cd03561 VHS VHS domain family; 83.7 24 0.00051 29.2 11.2 74 162-235 36-116 (133)
291 KOG2122 Beta-catenin-binding p 83.5 1E+02 0.0022 36.3 23.9 95 451-545 500-603 (2195)
292 PF08064 UME: UME (NUC010) dom 83.1 21 0.00045 28.1 11.0 59 409-470 27-88 (107)
293 PF09324 DUF1981: Domain of un 82.8 10 0.00022 28.5 7.6 68 160-227 14-84 (86)
294 KOG2759 Vacuolar H+-ATPase V1 82.2 56 0.0012 32.5 28.8 71 474-544 365-439 (442)
295 cd03569 VHS_Hrs_Vps27p VHS dom 82.0 29 0.00063 29.0 12.4 75 201-275 40-119 (142)
296 cd03567 VHS_GGA VHS domain fam 81.6 29 0.00064 28.8 12.3 74 162-235 37-120 (139)
297 cd00197 VHS_ENTH_ANTH VHS, ENT 80.9 27 0.00058 27.9 10.4 37 396-432 36-72 (115)
298 PF11935 DUF3453: Domain of un 80.8 48 0.001 30.8 13.0 89 475-566 43-165 (239)
299 KOG2122 Beta-catenin-binding p 79.8 1.3E+02 0.0029 35.3 22.4 212 176-389 364-603 (2195)
300 cd03572 ENTH_epsin_related ENT 79.7 31 0.00066 27.9 9.7 38 158-195 33-70 (122)
301 KOG1048 Neural adherens juncti 79.6 96 0.0021 33.5 23.6 108 279-386 517-640 (717)
302 KOG2038 CAATT-binding transcri 79.3 98 0.0021 33.4 27.3 259 239-504 302-605 (988)
303 KOG2081 Nuclear transport regu 78.9 85 0.0018 32.5 33.8 147 162-310 152-321 (559)
304 KOG2229 Protein required for a 78.7 82 0.0018 32.2 26.5 137 429-572 233-371 (616)
305 smart00185 ARM Armadillo/beta- 78.6 2.4 5.3E-05 26.1 2.7 28 515-542 13-40 (41)
306 PF12397 U3snoRNP10: U3 small 77.9 35 0.00076 27.5 11.6 71 317-389 4-76 (121)
307 PF08623 TIP120: TATA-binding 77.3 8.3 0.00018 33.1 6.2 59 213-272 38-96 (169)
308 cd00197 VHS_ENTH_ANTH VHS, ENT 76.1 38 0.00083 27.0 10.5 37 160-196 34-70 (115)
309 smart00567 EZ_HEAT E-Z type HE 76.0 2.8 6E-05 23.9 2.2 28 256-291 2-29 (30)
310 KOG3961 Uncharacterized conser 75.6 10 0.00022 33.5 6.3 87 476-563 115-208 (262)
311 smart00185 ARM Armadillo/beta- 74.1 5.5 0.00012 24.4 3.4 27 476-502 13-39 (41)
312 COG5369 Uncharacterized conser 73.5 11 0.00023 38.4 6.7 109 435-543 430-545 (743)
313 cd07064 AlkD_like_1 A new stru 73.4 71 0.0015 28.9 17.1 132 203-349 47-180 (208)
314 PF12397 U3snoRNP10: U3 small 73.1 48 0.001 26.8 12.0 36 199-234 3-39 (121)
315 PF05997 Nop52: Nucleolar prot 72.8 75 0.0016 28.9 12.7 69 13-81 4-77 (217)
316 COG5369 Uncharacterized conser 71.4 15 0.00033 37.4 7.2 108 396-503 430-544 (743)
317 COG5110 RPN1 26S proteasome re 71.3 1.3E+02 0.0029 31.1 28.3 245 318-590 449-703 (881)
318 cd03561 VHS VHS domain family; 70.9 59 0.0013 26.8 12.3 95 329-429 14-115 (133)
319 cd06561 AlkD_like A new struct 70.5 78 0.0017 28.1 16.9 64 283-349 108-171 (197)
320 PF07539 DRIM: Down-regulated 69.8 27 0.00059 29.2 7.4 55 279-340 16-70 (141)
321 PF08569 Mo25: Mo25-like; Int 69.8 1.2E+02 0.0025 29.9 26.9 128 399-526 166-313 (335)
322 smart00802 UME Domain in UVSB 69.7 53 0.0011 25.9 9.4 20 451-470 69-88 (107)
323 cd06561 AlkD_like A new struct 69.5 82 0.0018 28.0 15.9 63 205-270 108-170 (197)
324 COG5234 CIN1 Beta-tubulin fold 69.1 1.7E+02 0.0037 31.4 27.6 218 47-270 245-491 (993)
325 cd03572 ENTH_epsin_related ENT 68.7 61 0.0013 26.2 10.8 36 435-470 37-72 (122)
326 KOG1222 Kinesin associated pro 68.5 1.4E+02 0.0031 30.3 31.3 133 338-472 521-669 (791)
327 PF04078 Rcd1: Cell differenti 66.9 77 0.0017 29.5 10.2 96 411-506 110-220 (262)
328 KOG4199 Uncharacterized conser 66.6 1.3E+02 0.0028 29.1 18.0 143 438-590 285-442 (461)
329 PF11841 DUF3361: Domain of un 66.6 74 0.0016 27.1 9.3 97 452-548 33-136 (160)
330 KOG1932 TATA binding protein a 65.2 2.5E+02 0.0055 32.0 15.3 49 489-540 882-930 (1180)
331 cd03565 VHS_Tom1 VHS domain fa 65.1 82 0.0018 26.3 12.3 74 163-236 38-120 (141)
332 KOG1222 Kinesin associated pro 64.9 1.7E+02 0.0036 29.8 25.7 93 452-544 565-664 (791)
333 cd07064 AlkD_like_1 A new stru 63.8 1.1E+02 0.0025 27.5 16.4 156 58-232 23-180 (208)
334 smart00802 UME Domain in UVSB 63.5 72 0.0016 25.1 9.9 58 295-354 30-89 (107)
335 PF08767 CRM1_C: CRM1 C termin 62.9 1.6E+02 0.0034 28.8 26.2 74 356-430 115-198 (319)
336 cd03565 VHS_Tom1 VHS domain fa 62.9 90 0.002 26.1 10.9 75 136-210 50-133 (141)
337 KOG1566 Conserved protein Mo25 62.6 1.5E+02 0.0032 28.4 18.8 132 440-572 170-322 (342)
338 KOG1988 Uncharacterized conser 61.7 50 0.0011 36.0 9.0 95 454-548 42-136 (970)
339 KOG2199 Signal transducing ada 61.0 55 0.0012 32.1 8.4 76 279-354 44-124 (462)
340 PF03130 HEAT_PBS: PBS lyase H 60.6 6.8 0.00015 21.7 1.6 14 179-192 1-14 (27)
341 PF07539 DRIM: Down-regulated 60.1 66 0.0014 26.9 8.0 50 160-214 14-63 (141)
342 PF09324 DUF1981: Domain of un 57.8 78 0.0017 23.7 8.1 55 445-499 27-83 (86)
343 PF04388 Hamartin: Hamartin pr 57.7 2.6E+02 0.0057 30.7 14.0 151 9-172 4-161 (668)
344 COG2733 Predicted membrane pro 57.4 2.1E+02 0.0045 28.4 22.4 23 484-506 310-332 (415)
345 KOG2199 Signal transducing ada 56.2 1.7E+02 0.0036 28.9 10.7 75 201-275 44-123 (462)
346 PF14668 RICTOR_V: Rapamycin-i 55.7 34 0.00074 24.7 4.8 53 453-505 4-59 (73)
347 PF12612 TFCD_C: Tubulin foldi 54.6 1.4E+02 0.003 26.6 9.7 58 428-485 79-137 (193)
348 PF14631 FancD2: Fanconi anaem 54.5 4.7E+02 0.01 31.7 17.4 144 126-272 436-585 (1426)
349 KOG3961 Uncharacterized conser 53.9 55 0.0012 29.2 6.6 87 201-289 113-201 (262)
350 PF06371 Drf_GBD: Diaphanous G 52.8 91 0.002 27.4 8.4 55 448-502 128-185 (187)
351 KOG3036 Protein involved in ce 52.6 1.9E+02 0.0042 26.7 10.8 55 410-464 138-196 (293)
352 PF12612 TFCD_C: Tubulin foldi 52.0 1.2E+02 0.0026 26.9 9.0 24 441-464 12-35 (193)
353 KOG1087 Cytosolic sorting prot 49.8 1.3E+02 0.0029 30.9 9.6 97 406-508 14-116 (470)
354 PF14225 MOR2-PAG1_C: Cell mor 49.2 2.3E+02 0.0051 26.7 19.8 64 152-215 177-241 (262)
355 PF08620 RPAP1_C: RPAP1-like, 46.6 39 0.00085 24.3 3.9 36 6-41 36-71 (73)
356 COG5101 CRM1 Importin beta-rel 46.5 3.9E+02 0.0085 28.5 30.8 156 120-275 476-653 (1053)
357 KOG1087 Cytosolic sorting prot 44.7 3.1E+02 0.0068 28.3 11.3 98 171-274 13-116 (470)
358 PF14668 RICTOR_V: Rapamycin-i 43.5 1.1E+02 0.0025 22.0 5.9 52 376-427 5-59 (73)
359 PF14228 MOR2-PAG1_mid: Cell m 43.1 6.2E+02 0.013 29.8 31.3 139 160-311 193-359 (1120)
360 PF12783 Sec7_N: Guanine nucle 41.8 2.3E+02 0.0049 24.4 12.5 94 411-504 36-146 (168)
361 PF04388 Hamartin: Hamartin pr 40.2 4.7E+02 0.01 28.8 12.6 86 475-563 70-161 (668)
362 PF06685 DUF1186: Protein of u 40.1 3.1E+02 0.0068 25.5 17.3 52 322-373 114-169 (249)
363 PF11841 DUF3361: Domain of un 39.9 2.4E+02 0.0052 24.1 12.2 97 373-469 32-135 (160)
364 KOG4646 Uncharacterized conser 39.5 2.2E+02 0.0048 23.6 10.3 68 437-504 59-128 (173)
365 KOG1837 Uncharacterized conser 38.3 7.9E+02 0.017 29.7 25.8 75 396-470 1540-1616(1621)
366 PF14911 MMS22L_C: S-phase gen 37.2 4.4E+02 0.0095 26.3 17.9 33 435-467 255-289 (373)
367 COG4912 Predicted DNA alkylati 35.4 2.4E+02 0.0052 25.5 7.8 32 239-270 152-183 (222)
368 PF12333 Ipi1_N: Rix1 complex 34.0 1.7E+02 0.0036 22.8 6.1 53 162-214 10-65 (102)
369 KOG3036 Protein involved in ce 33.9 3.9E+02 0.0084 24.8 13.4 68 125-192 124-197 (293)
370 PF12333 Ipi1_N: Rix1 complex 33.4 1.3E+02 0.0028 23.4 5.4 37 200-236 9-45 (102)
371 PF04821 TIMELESS: Timeless pr 33.0 3.8E+02 0.0083 25.3 9.5 63 4-74 8-70 (266)
372 PF12726 SEN1_N: SEN1 N termin 31.1 7.8E+02 0.017 27.5 27.9 137 177-314 96-248 (727)
373 KOG1789 Endocytosis protein RM 31.1 8.9E+02 0.019 28.1 22.5 333 167-516 1776-2178(2235)
374 PF12243 CTK3: CTD kinase subu 29.4 3.4E+02 0.0073 22.7 8.5 89 449-544 21-120 (139)
375 PF12726 SEN1_N: SEN1 N termin 28.9 8.5E+02 0.018 27.2 34.1 136 59-196 94-247 (727)
376 KOG2842 Interferon-related pro 28.0 6.2E+02 0.013 25.3 15.6 207 10-216 61-303 (427)
377 PF06371 Drf_GBD: Diaphanous G 27.9 4.1E+02 0.0088 23.2 9.5 27 398-424 159-185 (187)
378 KOG4646 Uncharacterized conser 27.8 3.6E+02 0.0077 22.4 9.0 69 162-230 57-127 (173)
379 COG5330 Uncharacterized protei 27.7 3E+02 0.0064 27.2 7.7 59 326-384 14-73 (364)
380 KOG0929 Guanine nucleotide exc 26.7 1.2E+03 0.026 28.3 17.4 154 47-205 1036-1219(1514)
381 KOG0905 Phosphoinositide 3-kin 25.9 6.7E+02 0.015 29.3 10.6 112 331-456 902-1018(1639)
382 COG5330 Uncharacterized protei 24.9 4.8E+02 0.01 25.8 8.5 63 401-463 11-74 (364)
383 PF13764 E3_UbLigase_R4: E3 ub 24.9 1E+03 0.022 26.8 12.0 62 484-548 238-305 (802)
384 PF11919 DUF3437: Domain of un 24.6 2.9E+02 0.0064 20.9 5.7 57 490-547 4-62 (90)
385 PF14663 RasGEF_N_2: Rapamycin 23.6 1.5E+02 0.0032 23.7 4.3 28 476-503 9-36 (115)
386 PF08620 RPAP1_C: RPAP1-like, 23.2 96 0.0021 22.4 2.7 34 513-546 38-71 (73)
387 PF14222 MOR2-PAG1_N: Cell mor 22.8 9.6E+02 0.021 25.7 27.1 336 86-427 129-550 (552)
388 PF14663 RasGEF_N_2: Rapamycin 22.4 2E+02 0.0044 22.9 4.8 34 433-466 5-38 (115)
389 KOG4199 Uncharacterized conser 22.4 7.5E+02 0.016 24.3 27.4 144 399-542 285-443 (461)
390 COG5209 RCD1 Uncharacterized p 21.5 6.3E+02 0.014 23.1 8.1 54 410-463 159-216 (315)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-49 Score=400.40 Aligned_cols=583 Identities=54% Similarity=0.798 Sum_probs=546.6
Q ss_pred CCcccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhh
Q 006898 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAH 85 (626)
Q Consensus 6 ~~~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~ 85 (626)
++.|||..++++++..|...|..+.+-+.+++..+|.+.++.+++|++.+..++..+|+.+++..+|.+.++.|++.+.+
T Consensus 79 ~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~ 158 (759)
T KOG0211|consen 79 DSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAH 158 (759)
T ss_pred cccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHH
Confidence 37999999999999999999999999999999999999999999999999668899999999999999999999999999
Q ss_pred cchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC-hHHHHHH
Q 006898 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DILKTEL 164 (626)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~-~~~~~~l 164 (626)
.+++.+..+..+.+..+|+.+++.+..++...+++....++.|++..+..+++...|..+|.+++..+...+ +..+.++
T Consensus 159 ~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~el 238 (759)
T KOG0211|consen 159 MLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKREL 238 (759)
T ss_pred HhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHH
Confidence 999999999999999999999999999999999988889999999999999988999999999999999998 5789999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch-hhhhhhH
Q 006898 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-DCVAHIL 243 (626)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~i~ 243 (626)
.+.+.++++|.++.||..+++-++.++...+.+...+.++|.+.++..|+.+.||..|...+..+.+.+... ...+.+.
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~ 318 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLT 318 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhh
Confidence 999999999999999999999999999999998888999999999999999999999999999999999886 7788899
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----hHHHHHh
Q 006898 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQH 319 (626)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~ 319 (626)
+.+....+|++|.+|...+..+..+...+|.+....++.+.+...++|+.+++|.+++.....++.... .+...+.
T Consensus 319 ~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ 398 (759)
T KOG0211|consen 319 ESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSS 398 (759)
T ss_pred HHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhh
Confidence 999999999999999999999999999999977777899999999999999999999999999998877 4455677
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHh---hHHHHhhhchhhHHh
Q 006898 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK---LDQVNQVIGIDLLSQ 396 (626)
Q Consensus 320 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~---L~~~~~~~~~~~~~~ 396 (626)
++|.+..+..|.+..||.+.+..+..+...+|.+.....+.|.+...++|.++.||...... +..+....|.+...+
T Consensus 399 ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~ 478 (759)
T KOG0211|consen 399 ILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN 478 (759)
T ss_pred hhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh
Confidence 88999999999999999999999999999999888888999999999999999999999954 444556678888889
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhh
Q 006898 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 476 (626)
Q Consensus 397 ~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i 476 (626)
..+|.+..+..+.+||+|.+.++.+..++...|..++.+.+.+.+..++.|....+|++|+..+..++..+|.+|....+
T Consensus 479 slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~ 558 (759)
T KOG0211|consen 479 SLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEE 558 (759)
T ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccc
Q 006898 477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSP 556 (626)
Q Consensus 477 l~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~ 556 (626)
+|.+..+..+++|..|++.+.++..+++.+|.+.+.+.++|.+..+.+|++++||.++++.|..+...+..+.....+.|
T Consensus 559 i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~p 638 (759)
T KOG0211|consen 559 IPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLP 638 (759)
T ss_pred hHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred hHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhcCC
Q 006898 557 FSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQS 598 (626)
Q Consensus 557 ~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~~~ 598 (626)
++. .+..|+|.+||+ +|..|++.+.......+
T Consensus 639 ll~-~L~~d~~~dvr~---------~a~~a~~~i~l~~~~~~ 670 (759)
T KOG0211|consen 639 LLE-TLSSDQELDVRY---------RAILAFGSIELSRLESS 670 (759)
T ss_pred HHH-HhccCcccchhH---------HHHHHHHHHHHHHHhhh
Confidence 999 999999999999 99999988865443333
No 2
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-31 Score=274.32 Aligned_cols=486 Identities=19% Similarity=0.239 Sum_probs=430.7
Q ss_pred cCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccc-cCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcC
Q 006898 19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV 97 (626)
Q Consensus 19 ~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~-~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~ 97 (626)
..+...+|..++..+..++..+..+..++.+.|.+... .++.-.-|..++...+..+...........+.+....+.+|
T Consensus 169 ~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d 248 (759)
T KOG0211|consen 169 TVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQD 248 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccc
Confidence 35566679999999999988888777778999999873 33333345555566666555554445667888999999999
Q ss_pred cchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCCh--HHHHHHHHHHHHhcCCC
Q 006898 98 EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--ILKTELRSIYTQLCQDD 175 (626)
Q Consensus 98 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~--~~~~~l~~~l~~l~~d~ 175 (626)
+++.||.++..-++.+++.++.+.....++|.+..+..|+...||..|...+..+...+.. +..+.+.+.+.+..+|.
T Consensus 249 ~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~ 328 (759)
T KOG0211|consen 249 DTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDG 328 (759)
T ss_pred cchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcCh
Confidence 9999999999999999999998888888999999999999999999999988887776644 56778889999999999
Q ss_pred CHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcC
Q 006898 176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ 251 (626)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~ 251 (626)
+|++|...+.....+...++++..+....+.+..+++|+.+++|.+...-...+...... ....+.++|.+..++.
T Consensus 329 ~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~ 408 (759)
T KOG0211|consen 329 SWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVL 408 (759)
T ss_pred hHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHh
Confidence 999999999999999999999878888999999999999999999999998888888773 4445667899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhH---HHHHHhhChHHHHHhhHHHHHHhc
Q 006898 252 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV---TKFCRILNPELAIQHILPCVKELS 328 (626)
Q Consensus 252 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l---~~l~~~~~~~~~~~~l~~~l~~l~ 328 (626)
|.+.+||.+.+..+..+....|++...+.+.|.+...++|+.+.||......+ .......|...+.+..+|.+..+.
T Consensus 409 d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~ 488 (759)
T KOG0211|consen 409 DNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA 488 (759)
T ss_pred cccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc
Confidence 99999999999988888888888888889999999999999999999998544 344445677788899999999999
Q ss_pred cCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC
Q 006898 329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408 (626)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~ 408 (626)
.|.+|++|.++.+.++.++...|.+++.+.+.+.+..++.|...++|.+|...+..++..+|.+|....++|.+.....+
T Consensus 489 ~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q 568 (759)
T KOG0211|consen 489 EDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQ 568 (759)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999888
Q ss_pred CChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCC
Q 006898 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH 488 (626)
Q Consensus 409 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~ 488 (626)
++|.+|.+.+..+..++..+|.+.+.+.++|.+..+..|++++||..+++.+..+...+......+.+.|.+..+..|++
T Consensus 569 ~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~ 648 (759)
T KOG0211|consen 569 DNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQE 648 (759)
T ss_pred cccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcc
Confidence 89999999999999999999999999999999999999999999999999999999999888788999999999999999
Q ss_pred hHHHHHHHHHHHHhcc
Q 006898 489 YLYRMTILRAISLLAP 504 (626)
Q Consensus 489 ~~vR~~a~~~l~~i~~ 504 (626)
.++|..|..+++.+..
T Consensus 649 ~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 649 LDVRYRAILAFGSIEL 664 (759)
T ss_pred cchhHHHHHHHHHHHH
Confidence 9999999999987754
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-28 Score=252.16 Aligned_cols=542 Identities=17% Similarity=0.224 Sum_probs=423.1
Q ss_pred ccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccc--cCCchHHHHHHHHHHhccccc----cCCcc
Q 006898 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN--NDDDDEVLLAMAEELGVFIPY----VGGVE 82 (626)
Q Consensus 9 ~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~--~~~~~~vr~~~~~~l~~~~~~----~~~~~ 82 (626)
-++..|+..+.|+|.+.|..|-+.+.++...- .+.|.|..+ ...+|++|..++-.+.++... +. .+
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~-------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~-~e 75 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE-------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS-AE 75 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc-------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC-HH
Confidence 46788999999999999999999999875422 267777772 457999999999888766442 11 12
Q ss_pred hhhcchH-HHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH--
Q 006898 83 HAHVLLP-PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-- 159 (626)
Q Consensus 83 ~~~~l~~-~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-- 159 (626)
..+.+.. +|....+.+.+.||+.-+..+..+++..-++ -++.+++++.+..++.++..|..|..++..+...++..
T Consensus 76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~ 154 (1075)
T KOG2171|consen 76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ 154 (1075)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence 2233333 4555667789999999999999999998887 78899999999999999999999999999988877763
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cchh---hhHHH----HHHHhhcCCchhHHHHHHHHHHHhh
Q 006898 160 -LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLK---TDIMS----IFEDLTQDDQDSVRLLAVEGCAALG 230 (626)
Q Consensus 160 -~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~---~~ll~----~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (626)
+...+.++|.+.++|++..||-.++++++.++..... ...+ ..++| .+...+.+.+...-..+++++..++
T Consensus 155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 6679999999999999988999999999999998852 2111 22344 4445566677777788889998888
Q ss_pred cccCc--hhhhhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCC-----CccccchHHHHHHhcCCCh--------
Q 006898 231 KLLEP--QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP-----EPTRMDLVPAYVRLLRDNE-------- 293 (626)
Q Consensus 231 ~~~~~--~~~~~~i~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~-------- 293 (626)
+..++ ..+...++.+......+. +..+|..+.+.+..+++..+. ......+++.++.++.|.+
T Consensus 235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE 314 (1075)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence 87776 445566666666665554 678999999999888776321 1234578888888764211
Q ss_pred --------HHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHH
Q 006898 294 --------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIF 363 (626)
Q Consensus 294 --------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l 363 (626)
..-...|.+++..++..+|++.+...+++.+..++.+++|+-|.++.-+++.+++..++. ...+.+++++
T Consensus 315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~V 394 (1075)
T KOG2171|consen 315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIV 394 (1075)
T ss_pred cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 113567889999999999999888999999999999999999999999999999877653 3467899999
Q ss_pred HHhhcCCCHHHHHHHHHhhHHHHhhhchhhH---HhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhhHHHH---
Q 006898 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDDK--- 436 (626)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~---~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~~--- 436 (626)
.+.|+|+++.||.+|+.+++.+...++++.. .+.+.|.+...+.+. +.++...+..++-.+.+.+.++.+.++
T Consensus 395 l~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~ 474 (1075)
T KOG2171|consen 395 LNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG 474 (1075)
T ss_pred HhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999999999999999998887643 356677777777664 679999999999888887776655443
Q ss_pred HHH-HHHHHhcCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCC----ChHHHHHHHHHHHHhccccChH
Q 006898 437 LGA-LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP----HYLYRMTILRAISLLAPVMGSE 509 (626)
Q Consensus 437 l~p-~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~----~~~vR~~a~~~l~~i~~~~~~~ 509 (626)
++. .+..+++.+.+.||+.++.+++.++...+..+ ..+.++|.+.+.+... ....|....+|++.++...|++
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 333 44556678889999999999999999887764 3488899998876543 3557888899999999999977
Q ss_pred Hhh---hcHHHHHhhh---CCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHH
Q 006898 510 ITC---SRLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSF 559 (626)
Q Consensus 510 ~~~---~~~l~~l~~~---l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~ 559 (626)
.|. +.++..+..+ ..|.++..|......++++++.+|++ ++.+.++|.+.
T Consensus 555 ~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~ 612 (1075)
T KOG2171|consen 555 KFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLL 612 (1075)
T ss_pred hhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHH
Confidence 554 4566666666 56777889999999999999999985 55666666655
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-28 Score=248.52 Aligned_cols=577 Identities=19% Similarity=0.257 Sum_probs=429.6
Q ss_pred HHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHh--hhhhhcccccc-ccCCchHHHHHHHHHHhccccccC-Ccc----
Q 006898 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEER--TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG-GVE---- 82 (626)
Q Consensus 11 i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~-~~~---- 82 (626)
+.+|.++.+|+|+..|++|+..|..+....|... ..+.+.+.+.+ ..|++..||-+++++++.++.+.. .+.
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~ 199 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDK 199 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHH
Confidence 5678899999999999999999999988777543 24577788877 556666699999999999998874 222
Q ss_pred ---hhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHHhcCC--ccchhHHHhhHhHHhcCC
Q 006898 83 ---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGE--WFTARVSACGLFHIAYPS 155 (626)
Q Consensus 83 ---~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~~~--~~~~r~~a~~~l~~~~~~ 155 (626)
..+.++..+...+.+++.+.-..+.+++..+....++ ......++.+......++ +..+|..|.+++..+.+.
T Consensus 200 ~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 200 FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 2233444556667777777778888888888887665 223334566666666665 577999999999888777
Q ss_pred CCh------HHHHHHHHHHHHhcC----CCC------------HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcC
Q 006898 156 APD------ILKTELRSIYTQLCQ----DDM------------PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD 213 (626)
Q Consensus 156 ~~~------~~~~~l~~~l~~l~~----d~~------------~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d 213 (626)
.+. .....+++.++.+.. |+. ..--..|.+++..++..+|++...+-+++.+..++.+
T Consensus 280 Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S 359 (1075)
T KOG2171|consen 280 APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQS 359 (1075)
T ss_pred hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcC
Confidence 443 244566666666542 211 1245678899999999999999889999999999999
Q ss_pred CchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHh
Q 006898 214 DQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRL 288 (626)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~ 288 (626)
++|.-|.+++.+++.+++++++ ....+.+++.+...++|++++||.+++.++|+++..++.+. ..+.+.|.++..
T Consensus 360 ~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ 439 (1075)
T KOG2171|consen 360 TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIAL 439 (1075)
T ss_pred CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999987 45688899999999999999999999999999999887653 234677788887
Q ss_pred cCCCh-HHHHHHHHHhHHHHHHhhChHHH---HHhhHH-HHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH--HHHhHHH
Q 006898 289 LRDNE-AEVRIAAAGKVTKFCRILNPELA---IQHILP-CVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLP 361 (626)
Q Consensus 289 l~d~~-~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~-~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~ 361 (626)
+.|.. +.|..+|+.++..+.+.+..+.+ .+.++. .+..+.++..+.||+.+..+++..+...+..+ +.+.++|
T Consensus 440 ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp 519 (1075)
T KOG2171|consen 440 LDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMP 519 (1075)
T ss_pred hcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Confidence 77655 78999999999999998877644 334444 44456778889999999999999998776643 5678999
Q ss_pred HHHHhhcC----CCHHHHHHHHHhhHHHHhhhchhhHH---hhHHHHHHHH---hcCCChHHHHHHHHHHHHHHHhhChh
Q 006898 362 IFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVEL---AEDRHWRVRLAIIEYIPLLASQLGVG 431 (626)
Q Consensus 362 ~l~~~l~d----~~~~vr~~a~~~L~~~~~~~~~~~~~---~~i~~~l~~~---~~~~~~~~r~~~~~~l~~l~~~~~~~ 431 (626)
.+.+++.. +...+|...+++++.+...+|.+.+. +.++..+... ..+.+.+.|...+.++..+++.+|+.
T Consensus 520 ~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~ 599 (1075)
T KOG2171|consen 520 LLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDD 599 (1075)
T ss_pred HHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchh
Confidence 99998863 34678888999999999999987764 3455555555 34567788899999999999988876
Q ss_pred h--HHHHHHHHHHHHhc--------C------------------------------------------------------
Q 006898 432 F--FDDKLGALCMQWLQ--------D------------------------------------------------------ 447 (626)
Q Consensus 432 ~--~~~~l~p~l~~~l~--------d------------------------------------------------------ 447 (626)
+ +.+.++|.++...+ |
T Consensus 600 F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~p 679 (1075)
T KOG2171|consen 600 FAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAP 679 (1075)
T ss_pred hHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5 34555665554321 0
Q ss_pred ----------------CchHHHHHHHHHHHHHHHHh------ChHH---HhhhhHHHHHhhhcC-CChHHHHHHHHHHHH
Q 006898 448 ----------------KVYSIRDAAANNLKRLAEEF------GPEW---AMQHITPQVLEMINN-PHYLYRMTILRAISL 501 (626)
Q Consensus 448 ----------------~~~~VR~~a~~~l~~l~~~~------~~~~---~~~~il~~l~~~l~~-~~~~vR~~a~~~l~~ 501 (626)
-...||.+|++++..++... ++.. ....+.|.+...+.+ ++..+-...++++++
T Consensus 680 Yve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~ 759 (1075)
T KOG2171|consen 680 YVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAE 759 (1075)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Confidence 12345667776666665432 1111 124445555544433 455566666666666
Q ss_pred hccccChH------------------------------------------------------------------------
Q 006898 502 LAPVMGSE------------------------------------------------------------------------ 509 (626)
Q Consensus 502 i~~~~~~~------------------------------------------------------------------------ 509 (626)
..+.+|..
T Consensus 760 ~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~ 839 (1075)
T KOG2171|consen 760 CIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFL 839 (1075)
T ss_pred HHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHcccccc
Confidence 55544411
Q ss_pred HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHH
Q 006898 510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLAL 587 (626)
Q Consensus 510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al 587 (626)
.+...+.|.+..++.++.+.-|..+.-+++.+++..|+. .+...++|.+. ....|.+++||. +|+-++
T Consensus 840 p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~-~~~~d~~pEVRq---------aAsYGi 909 (1075)
T KOG2171|consen 840 PFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVL-EALQDSDPEVRQ---------AAAYGM 909 (1075)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-HHcCCCCHHHHH---------HHHHHH
Confidence 122567888888888888877999999999999998875 67788999999 999999999999 999999
Q ss_pred HHHHHHhhcC
Q 006898 588 NYCHRWWRKQ 597 (626)
Q Consensus 588 ~~~~~~~~~~ 597 (626)
+.+.+..+..
T Consensus 910 Gvlaq~~g~~ 919 (1075)
T KOG2171|consen 910 GVLAQFGGED 919 (1075)
T ss_pred HHHHHHcCcc
Confidence 9888765544
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.1e-28 Score=236.30 Aligned_cols=523 Identities=20% Similarity=0.192 Sum_probs=373.1
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh-------hHHHhHHH
Q 006898 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES-------DLVDWYIP 128 (626)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~-------~~~~~l~~ 128 (626)
+.|.++.+|...+..+..++.. ++-..|+.++|.|..++..++....+.|..+|.+|++..... .....++|
T Consensus 99 lgd~~~lIr~tvGivITTI~s~-~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mip 177 (885)
T KOG2023|consen 99 LGDASPLIRATVGIVITTIAST-GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIP 177 (885)
T ss_pred ccCchHHHHhhhhheeeeeecc-cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHH
Confidence 3466677777766666665543 335578999999999998888888999999999999876431 22345889
Q ss_pred HHHHHhcCCccchhHHHhhHhHHhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhH
Q 006898 129 LVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDI 203 (626)
Q Consensus 129 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l 203 (626)
.+.++.++.++..|..|..++..+...-++. ..+..+..+..+.+|+++.||+..|.++..+.+..+.. .....+
T Consensus 178 kfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~I 257 (885)
T KOG2023|consen 178 KFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNI 257 (885)
T ss_pred HHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHH
Confidence 9999999999999999999999887766653 55778888889999999999999999999999876553 344567
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHH----------hcC------------------
Q 006898 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVN----------FSQ------------------ 251 (626)
Q Consensus 204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~----------~~~------------------ 251 (626)
+.++....+|.+.+|-..|++.+.++++.--. ..+.+.++|.+.. ++.
T Consensus 258 veyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPR 337 (885)
T KOG2023|consen 258 VEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPR 337 (885)
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccch
Confidence 88888889999999999999999998876432 3456667776543 111
Q ss_pred ------------------C----------CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHh
Q 006898 252 ------------------D----------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK 303 (626)
Q Consensus 252 ------------------d----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 303 (626)
| .+|..|++.+.+++.++..+|.+. ...++|.+.+.+..++|.+|++++-+
T Consensus 338 fhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~~W~vrEagvLA 416 (885)
T KOG2023|consen 338 FHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSEEWKVREAGVLA 416 (885)
T ss_pred hhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcchhhhhhhhHHH
Confidence 0 138999999999999999988665 46788888888888999999999999
Q ss_pred HHHHHHhhCh--HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHH
Q 006898 304 VTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNI 378 (626)
Q Consensus 304 l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a 378 (626)
+|.+++.... ......++|.+.+++.|+.+-||...|..++..++..-.+ .+...++.-++..+-|.+..|+++|
T Consensus 417 lGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAA 496 (885)
T KOG2023|consen 417 LGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAA 496 (885)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 9999986532 2345788999999999999999999999999988755333 2333344445555669999999999
Q ss_pred HHhhHHHHhhhchhhH--HhhHHHHHHHHh---cCCChHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHH---Hhc
Q 006898 379 ISKLDQVNQVIGIDLL--SQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQL----GVGFFDDKLGALCMQ---WLQ 446 (626)
Q Consensus 379 ~~~L~~~~~~~~~~~~--~~~i~~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~----~~~~~~~~l~p~l~~---~l~ 446 (626)
+.++..+-+..|.+.. .+.|+..+.... +.+|-.+ ...+++.++... .+..+.+.++|.+.. .+.
T Consensus 497 csAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ls 573 (885)
T KOG2023|consen 497 CSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLS 573 (885)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcC
Confidence 9999999887776532 244555554443 3344333 345555666554 445556667776655 367
Q ss_pred CCchHHHHHHHHHHHHHHHHhChHHH------hh---hhHHHHHh-h---hcC-----CChHHHHHHHHHHHHhccccCh
Q 006898 447 DKVYSIRDAAANNLKRLAEEFGPEWA------MQ---HITPQVLE-M---INN-----PHYLYRMTILRAISLLAPVMGS 508 (626)
Q Consensus 447 d~~~~VR~~a~~~l~~l~~~~~~~~~------~~---~il~~l~~-~---l~~-----~~~~vR~~a~~~l~~i~~~~~~ 508 (626)
|++.++= --.+|+..++..+|..+. .+ .++..-.+ + -++ |+.+.-..++..++-+++.+|.
T Consensus 574 d~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~ 652 (885)
T KOG2023|consen 574 DSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGS 652 (885)
T ss_pred cccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhh
Confidence 7776653 456778888877765421 11 22221111 1 122 3444556777777777776654
Q ss_pred H----HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCcccccccccCchhHH
Q 006898 509 E----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLF 582 (626)
Q Consensus 509 ~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~ 582 (626)
. .....++..+..++.|+.++||+.+...||.+.....+. +.....+|.+- .-++-....+-. +
T Consensus 653 ~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg-~Nl~~~~isv~n---------N 722 (885)
T KOG2023|consen 653 HIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILG-ANLNPENISVCN---------N 722 (885)
T ss_pred chHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHh-hcCChhhchHHH---------H
Confidence 2 345679999999999999999999999999998775331 22233333333 212222233344 8
Q ss_pred HHHHHHHHHHHh
Q 006898 583 SCLALNYCHRWW 594 (626)
Q Consensus 583 a~~al~~~~~~~ 594 (626)
|.+|++.+.--+
T Consensus 723 A~WAiGeia~k~ 734 (885)
T KOG2023|consen 723 AIWAIGEIALKM 734 (885)
T ss_pred HHHHHHHHHHHh
Confidence 999999886433
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-25 Score=215.00 Aligned_cols=555 Identities=18% Similarity=0.180 Sum_probs=384.7
Q ss_pred HHHHHHHhcCccHHHHHHHHhhHHHHHHh----hChH---hhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCc-
Q 006898 11 IAVLIDELKNDDIQLRLNSIRRLSTIARA----LGEE---RTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV- 81 (626)
Q Consensus 11 i~~l~~~l~s~d~~~r~~a~~~l~~i~~~----~~~~---~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~- 81 (626)
+..|.+.|.++|......|..+|.+|.+- ++.+ +-.+-++|-+.+ ..+++|.+|.-+..++.+++......
T Consensus 130 Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal 209 (885)
T KOG2023|consen 130 LPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQAL 209 (885)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHH
Confidence 56788889999999999999999998552 2211 233456777777 57889999999999999887754432
Q ss_pred -chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHH---hHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC
Q 006898 82 -EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD---WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (626)
Q Consensus 82 -~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~---~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~ 157 (626)
...+.++..+..+.+|+++.||+..+.++.-+.+..+. .+.+ .++.++.....|.+..+...||+....+++..-
T Consensus 210 ~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi 288 (885)
T KOG2023|consen 210 YVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI 288 (885)
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC
Confidence 23455666667778999999999999999888776543 3333 356666777788888898999998887766432
Q ss_pred -h----HHHHHHHHHHHHhc----------C------------------------------------C----------CC
Q 006898 158 -D----ILKTELRSIYTQLC----------Q------------------------------------D----------DM 176 (626)
Q Consensus 158 -~----~~~~~l~~~l~~l~----------~------------------------------------d----------~~ 176 (626)
+ .+...++|.++... + | .+
T Consensus 289 ~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~d 368 (885)
T KOG2023|consen 289 CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSD 368 (885)
T ss_pred cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccccc
Confidence 2 35566666665432 1 0 12
Q ss_pred HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCC
Q 006898 177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKS 254 (626)
Q Consensus 177 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~ 254 (626)
|..|+-.+.+|.-++..++. ...+.++|.+.+.+.+++|.+|++++-+++++++++-. -.+.+.++|++..+++|+.
T Consensus 369 WNLRkCSAAaLDVLanvf~~-elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKk 447 (885)
T KOG2023|consen 369 WNLRKCSAAALDVLANVFGD-ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKK 447 (885)
T ss_pred ccHhhccHHHHHHHHHhhHH-HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCc
Confidence 88999999999999988876 55688999999999999999999999999999998765 4567789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccchHHHHH---HhcCCChHHHHHHHHHhHHHHHHhhChHHH--HHhhHHHHHHhcc
Q 006898 255 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYV---RLLRDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSS 329 (626)
Q Consensus 255 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~ 329 (626)
+-||...+.+++..+...-.+...+.+.|.+. ..+-|.+..|+++|+.++..+-+..+.+.+ .+.++..+....+
T Consensus 448 plVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~ 527 (885)
T KOG2023|consen 448 PLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG 527 (885)
T ss_pred cceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999987765554445555554 445588999999999999999887666532 2222222221111
Q ss_pred ---CCCHHHHHHHHHHHHhhhhhhc----HHHHHHhHHHHHHH---hhcCCCHHHHHHHHHhhHHHHhhhchhhH--Hhh
Q 006898 330 ---DSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLS---LLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQS 397 (626)
Q Consensus 330 ---d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~L~~~~~~~~~~~~--~~~ 397 (626)
.+|-. ....+++.++...| +..+.+.++|.+.. .++|++.++- -.+++++.+...+|.... .+.
T Consensus 528 kYQ~KNLl---ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF~P~~~~ 603 (885)
T KOG2023|consen 528 KYQKKNLL---ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLF-PLLECLSSIASALGVGFLPYAQP 603 (885)
T ss_pred HHhhccee---hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHH-HHHHHHHHHHHHHhccccccCHH
Confidence 12211 34456666665544 45567777877754 5678776652 345566666655543221 011
Q ss_pred -------HHH----HHHHHhcC-----CChHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcCCchHHHHHHH
Q 006898 398 -------LLP----AIVELAED-----RHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAA 457 (626)
Q Consensus 398 -------i~~----~l~~~~~~-----~~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~p~l~~~l~d~~~~VR~~a~ 457 (626)
++. .+.+.-++ ++...-..++..++.+++++|... ..+.+..+++.++.|..++||+.+.
T Consensus 604 Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~F 683 (885)
T KOG2023|consen 604 VYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAF 683 (885)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHH
Confidence 111 11111122 233445668889999999887542 3356899999999999999999999
Q ss_pred HHHHHHHHHhChHH--HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCC--CCCchHH
Q 006898 458 NNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASK--DRVPNIK 531 (626)
Q Consensus 458 ~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~--d~~~~vR 531 (626)
..+|.++....+.. ....++|.+...++-.+-.+..+|++++|.++.+++.+ .+...++..|...++ .....+-
T Consensus 684 ALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tll 763 (885)
T KOG2023|consen 684 ALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLL 763 (885)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHH
Confidence 99999998764331 23556666665566667789999999999999988876 234444444444443 3345688
Q ss_pred HHHHHHHHHHHhhhcc---chhhhcccchHHhhhccCCCccccc
Q 006898 532 FNVAKVLQSLIPIVDQ---SVSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 532 ~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
.+++-++|++....++ +.....+.|... .+.+-.|.+-+.
T Consensus 764 ENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~-sl~~i~DneEK~ 806 (885)
T KOG2023|consen 764 ENTAITIGRLGYICPEEVAPHLDSFMRPWCT-SLRNIDDNEEKE 806 (885)
T ss_pred HhhhhhhhhhhccCHHhcchhHHHHHHHHHH-HhcccccchhHH
Confidence 8899999998766544 233345566666 666555555555
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.9e-22 Score=194.40 Aligned_cols=555 Identities=16% Similarity=0.196 Sum_probs=401.9
Q ss_pred HHHHHHHhcCccHH-HHHHHHhhHHHHHHhhChHhhhhhh----cccccc--ccCCchHHHHHHHHHHhccccccC----
Q 006898 11 IAVLIDELKNDDIQ-LRLNSIRRLSTIARALGEERTRKEL----IPFLSE--NNDDDDEVLLAMAEELGVFIPYVG---- 79 (626)
Q Consensus 11 i~~l~~~l~s~d~~-~r~~a~~~l~~i~~~~~~~~~~~~l----~~~l~~--~~~~~~~vr~~~~~~l~~~~~~~~---- 79 (626)
|..|+....++.+. +|..++.+++.+.....|+...+.- ...+.. -.+++..||.++..+|.+-....+
T Consensus 131 i~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~ 210 (859)
T KOG1241|consen 131 IVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFN 210 (859)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555555555 8999999999999988887533322 222222 245677899999999876444322
Q ss_pred CcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcC--
Q 006898 80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP-- 154 (626)
Q Consensus 80 ~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~-- 154 (626)
.+...+.++.......+.++.+||.+|..||.+|....-.. -..+-+.++......++++.+...+.+..+.++.
T Consensus 211 ~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEE 290 (859)
T KOG1241|consen 211 NEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEE 290 (859)
T ss_pred cHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 23456778887777788899999999999999998865431 1122244555556677788888877777665443
Q ss_pred -------------CCCh-------HHHHHHHHHHHHhcC-------CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHH
Q 006898 155 -------------SAPD-------ILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207 (626)
Q Consensus 155 -------------~~~~-------~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l 207 (626)
..++ ...+.++|.+++++. |.+|..-++|..+|.-+++..++ .+.++++|++
T Consensus 291 iD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D-~Iv~~Vl~Fi 369 (859)
T KOG1241|consen 291 IDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD-DIVPHVLPFI 369 (859)
T ss_pred HHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc-cchhhhHHHH
Confidence 1111 123467777777652 35699999999999999998876 4557899999
Q ss_pred HHhhcCCchhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc----ccc
Q 006898 208 EDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RMD 280 (626)
Q Consensus 208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ 280 (626)
.+-+++++|.-|.+++-+++.+.+.-.+ ..+.+..+|.+..+..|++-.||.+++.+||.++..++.... ...
T Consensus 370 ee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~ 449 (859)
T KOG1241|consen 370 EENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQS 449 (859)
T ss_pred HHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence 9999999999999999999999877655 345677888999999999999999999999999998764432 335
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH-----------HHHHhhHHHHHHhcc--C-CCHHHHHHHHHHHHhh
Q 006898 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-----------LAIQHILPCVKELSS--D-SSQHVRSALASVIMGM 346 (626)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-----------~~~~~l~~~l~~l~~--d-~~~~vr~~~~~~l~~l 346 (626)
.++.+.+.++| +|.+...+..++..+++..... .+.+.++..|.+..+ | .....|.++.++|+.+
T Consensus 450 ~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl 528 (859)
T KOG1241|consen 450 KLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL 528 (859)
T ss_pred HHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 66777777777 4789899999988888644211 122344444443332 2 3458999999999999
Q ss_pred hhhhcHHHHH--HhHHHHHHH---------hhc--C--CCHHHHHHHHHhhHHHHhhhchhh--HHhhHHHHHHHHhcC-
Q 006898 347 APLLGKDATI--EQLLPIFLS---------LLK--D--EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED- 408 (626)
Q Consensus 347 ~~~~~~~~~~--~~l~~~l~~---------~l~--d--~~~~vr~~a~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~- 408 (626)
.+..+++.+. ..+.+.+.. .+. | .-.++....+..|..+...++++. ..+.++..+.++++.
T Consensus 529 Ik~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~ 608 (859)
T KOG1241|consen 529 IKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESK 608 (859)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCC
Confidence 9887665431 122222222 222 1 124566666777888877777643 346788888888887
Q ss_pred CChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhh
Q 006898 409 RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEM 483 (626)
Q Consensus 409 ~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~ 483 (626)
++-.+...++-+++.++..+|+.+ +.+.+.|.+...+ +-.+..|..+|+...|.++..++.+. +.+.++..|.+.
T Consensus 609 ~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~ 688 (859)
T KOG1241|consen 609 RSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQC 688 (859)
T ss_pred ccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 566788899999999999999876 4478999998888 56678899999999999999998874 347888889998
Q ss_pred hcCC--ChHHHHHHHHHHHHhccccChHH--hhhcHHHHHhhhC---CCC--------CchHHHHHHHHHHHHHhhhcc-
Q 006898 484 INNP--HYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINAS---KDR--------VPNIKFNVAKVLQSLIPIVDQ- 547 (626)
Q Consensus 484 l~~~--~~~vR~~a~~~l~~i~~~~~~~~--~~~~~l~~l~~~l---~d~--------~~~vR~~a~~~l~~i~~~~~~- 547 (626)
+.++ ...++-..+.++|.|+-.+|..+ +.+.++|.+.... .|+ ..++|.+++++...+...++.
T Consensus 689 Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~ 768 (859)
T KOG1241|consen 689 LSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTH 768 (859)
T ss_pred ccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8887 46689999999999998888764 6788888888765 233 235899999999999888874
Q ss_pred ------chhhhcccchHHhhhccCCCc
Q 006898 548 ------SVSTFSVSPFSFMLYLNVNNF 568 (626)
Q Consensus 548 ------~~~~~~i~~~l~~~l~~d~d~ 568 (626)
.++.+.|+..+. +...|++.
T Consensus 769 ~~~~~~~p~v~~I~sfi~-~I~~e~~~ 794 (859)
T KOG1241|consen 769 ADVMLVQPYVPHIISFID-RIAAEPDV 794 (859)
T ss_pred cchhhhhcchHHHHHHHH-HHhcCccc
Confidence 255566777777 76666654
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.94 E-value=4.7e-23 Score=206.78 Aligned_cols=559 Identities=15% Similarity=0.201 Sum_probs=368.2
Q ss_pred ccHHHHHHHhcCccHHHHHHHHhhHHHHHH----hhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchh
Q 006898 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIAR----ALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHA 84 (626)
Q Consensus 9 ~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~----~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~ 84 (626)
+.| -|+++|.|.|.+.|++|...|.+-.. .+..+...+.+--+|+.+.|.++||++.|.+|+|.++..++.....
T Consensus 6 ~~i-~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le 84 (1233)
T KOG1824|consen 6 VGI-NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE 84 (1233)
T ss_pred HHH-HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH
Confidence 344 78999999999999999998886533 3444444444444444478999999999999999998877643332
Q ss_pred hcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcCh-------hhHHHhHHHHHHHHhcC--CccchhHHHhhHhHHhcCC
Q 006898 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-------SDLVDWYIPLVKRLAAG--EWFTARVSACGLFHIAYPS 155 (626)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~-------~~~~~~l~~~l~~l~~~--~~~~~r~~a~~~l~~~~~~ 155 (626)
..+-.+..++.+ ..++.|..+.-+|.....+++| ..+...+.|.+...... +...++..++.+++.+..+
T Consensus 85 ~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 85 TIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 323333444443 3445688888888888777775 11222344444333221 2233555555555555444
Q ss_pred CCh---HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhC-------------------------------------
Q 006898 156 APD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE------------------------------------- 195 (626)
Q Consensus 156 ~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~------------------------------------- 195 (626)
++. +....++..+..-+..+...||+.++.+++.++...+
T Consensus 164 ~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ 243 (1233)
T KOG1824|consen 164 FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQ 243 (1233)
T ss_pred hcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 443 2333444444444444445566666666655554433
Q ss_pred --c--cchhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhhcccCch--hhhhhhHHHHHHhc----------------
Q 006898 196 --P--AHLKTDIMSIFEDLT---QDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFS---------------- 250 (626)
Q Consensus 196 --~--~~~~~~ll~~l~~l~---~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~---------------- 250 (626)
. ....+.++|.+.+.+ +.++++.|+.++++++.+...++.+ .+++.++..+...+
T Consensus 244 ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~ 323 (1233)
T KOG1824|consen 244 AGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDA 323 (1233)
T ss_pred hcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhh
Confidence 2 123455778877777 6667899999999999999888763 24444444432211
Q ss_pred ------------------CCCCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 006898 251 ------------------QDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310 (626)
Q Consensus 251 ------------------~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 310 (626)
+|.+|.||+++++++..+...-.+- .+...+-|.++..+++.+.+|+...+.++-.+...
T Consensus 324 ~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~q 403 (1233)
T KOG1824|consen 324 MFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQ 403 (1233)
T ss_pred hhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 1237999999999998876542211 12345677778888999999999988888777664
Q ss_pred hCh----------------H---HHH----HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHH
Q 006898 311 LNP----------------E---LAI----QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLS 365 (626)
Q Consensus 311 ~~~----------------~---~~~----~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ 365 (626)
.++ . .+. ..++..+...+.+++...|..+...+..+....+. ....+.++|.+..
T Consensus 404 t~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~ 483 (1233)
T KOG1824|consen 404 TRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIY 483 (1233)
T ss_pred CCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhh
Confidence 431 0 111 12333334444556666777777777777765543 2345678999999
Q ss_pred hhcCCC--HHHHHHHHHhhHHHHhhhchhhHH---hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---------hh
Q 006898 366 LLKDEF--PDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---------VG 431 (626)
Q Consensus 366 ~l~d~~--~~vr~~a~~~L~~~~~~~~~~~~~---~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---------~~ 431 (626)
.|+|.+ ...+..++..+.......+++.+. ..+.|.+.....++-+.+-..++.....+.+... ..
T Consensus 484 ~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~ 563 (1233)
T KOG1824|consen 484 SLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDAS 563 (1233)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCC
Confidence 999865 456677777776666666666553 3455666667789999999999999888887542 22
Q ss_pred hHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccc--
Q 006898 432 FFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPV-- 505 (626)
Q Consensus 432 ~~~~~l~p~l~~~l--~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~-- 505 (626)
.+...+....++.+ +|.+.+||++|..|+|.++..+|+. . ..-+|.....+-+ .|.-+|..|+.++..++..
T Consensus 564 ~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~-l-~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l 641 (1233)
T KOG1824|consen 564 PYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDF-L-GNELPRTLPILLERLGNEITRLTAVKALTLIAMSPL 641 (1233)
T ss_pred hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhh-h-hhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccc
Confidence 33344555545544 6888999999999999999999853 2 2233333332222 4677999999999988752
Q ss_pred -cChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc---hhhhcccchHHhhhccCCCccccc
Q 006898 506 -MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 506 -~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
++.......++|.+...+.-.....|.....++..+...++.. ...+.++..+. .+..+.|..+..
T Consensus 642 ~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~-~Lisesdlhvt~ 711 (1233)
T KOG1824|consen 642 DIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELP-PLISESDLHVTQ 711 (1233)
T ss_pred eeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 3334567789999999998888999999999999999888653 33455666666 788898988777
No 9
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.93 E-value=6e-22 Score=193.92 Aligned_cols=537 Identities=17% Similarity=0.199 Sum_probs=383.2
Q ss_pred cCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCc
Q 006898 19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE 98 (626)
Q Consensus 19 ~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~ 98 (626)
-.+|...|.+....+.+++...|-.+....+.|-+. +.++-||+..+.+.+.++..+| .+.++|+|..++.+.
T Consensus 451 ided~yar~egreIisnLakaaGla~mistmrpDid---n~deYVRnttarafavvasalg----ip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 451 IDEDYYARVEGREIISNLAKAAGLATMISTMRPDID---NKDEYVRNTTARAFAVVASALG----IPALLPFLKAVCGSK 523 (1172)
T ss_pred ecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcc---cccHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHhccc
Confidence 456777888887788888777776655555555443 4577889888888888877665 357888888888776
Q ss_pred -chHHHHHHHHHHHHHHhhcChhhHH--HhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCCh---HHHHHHHHHHHHhc
Q 006898 99 -ETCVRDKAVESLCRIGSQMRESDLV--DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLC 172 (626)
Q Consensus 99 -~~~vR~~a~~~l~~i~~~~~~~~~~--~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~ 172 (626)
+++-|+..+++..+|+..++-..+. .-++..+...+.|++..+|..++..++.+++..++ +..+.++..|.+..
T Consensus 524 kSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgi 603 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGI 603 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 7888888888888888777653321 23566677778888888888888888888777665 45666777776665
Q ss_pred CCCCHHHHHHHHHhHHHHHHhhCcc---chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch--hhhhhhHHHH-
Q 006898 173 QDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVI- 246 (626)
Q Consensus 173 ~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l- 246 (626)
.......-.+.+++++.++....++ .+..+++-.+.+-.+.++++.++..++.+...+...|-+ -....++|.+
T Consensus 604 r~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff 683 (1172)
T KOG0213|consen 604 RQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFF 683 (1172)
T ss_pred HHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHH
Confidence 5554455555666666665544332 233344555555566777777777777777666554431 1112222221
Q ss_pred --------------------------------------HHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc----chHHH
Q 006898 247 --------------------------------------VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM----DLVPA 284 (626)
Q Consensus 247 --------------------------------------~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~----~l~~~ 284 (626)
..-+.|.++.-|...+.++..+...+|.....+ .++..
T Consensus 684 ~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidg 763 (1172)
T KOG0213|consen 684 FSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDG 763 (1172)
T ss_pred hhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH
Confidence 122345566677777777777776666543322 33444
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHHhhCh--HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh---cHHHHHHhH
Q 006898 285 YVRLLRDNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL---GKDATIEQL 359 (626)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l 359 (626)
++..+.++..+.. ..+..++.++..++. ..+...+...+...++++++.||+.++..++.++..+ +++....++
T Consensus 764 il~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~l 842 (1172)
T KOG0213|consen 764 ILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHL 842 (1172)
T ss_pred HHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 4444433322221 234556666666655 3344556666677789999999999999999888654 555566677
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHH
Q 006898 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 436 (626)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~---~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~ 436 (626)
--++...+..+.++|--..+.++..+.+.+|-... .+.++|.+..++++.+..+....+..++.++..-....-...
T Consensus 843 GvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aRE 922 (1172)
T KOG0213|consen 843 GVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSARE 922 (1172)
T ss_pred hHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHH
Confidence 77788889999999999999999999888865543 257899999999999999999999999999875332211122
Q ss_pred HHHH---HHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhh
Q 006898 437 LGAL---CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 513 (626)
Q Consensus 437 l~p~---l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~ 513 (626)
.+-+ ++.+|...+.++|.+|..++|.+.+.+|+. .++..|++.++-.+.+.|.+..-+++.+++.|++-
T Consensus 923 WMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF---- 994 (1172)
T KOG0213|consen 923 WMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF---- 994 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----
Confidence 2333 445567778999999999999999999985 57888888888888899999999999999988874
Q ss_pred cHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCccccc
Q 006898 514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 514 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
.++|.|+.-..-++.+|+...++++.-+++..|+. .+...+.|.|. -.+.|.|..-|.
T Consensus 995 tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~Plle-DAlmDrD~vhRq 1054 (1172)
T KOG0213|consen 995 TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLE-DALMDRDLVHRQ 1054 (1172)
T ss_pred hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHH-HhhccccHHHHH
Confidence 57888888888899999999999999999999874 56678999999 888899998888
No 10
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.93 E-value=9.9e-22 Score=192.43 Aligned_cols=537 Identities=16% Similarity=0.143 Sum_probs=382.1
Q ss_pred hcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCC-chHHHHHHHHHHhccccccCCc--chhhcchHHHhh
Q 006898 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGV--EHAHVLLPPLET 93 (626)
Q Consensus 18 l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~-~~~vr~~~~~~l~~~~~~~~~~--~~~~~l~~~l~~ 93 (626)
+.+.|+.+|....++.+.++.++|. +.++|||.. +.+. +.+-|+...++..+++...|.. .+...++.++..
T Consensus 485 idn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~ 560 (1172)
T KOG0213|consen 485 IDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH 560 (1172)
T ss_pred cccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 4578999999999999999999984 688999988 6654 7788888888888877766643 355667788888
Q ss_pred hhcCcchHHHHHHHHHHHHHHhhcChhhHHH---hHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH----HHHHHHH
Q 006898 94 LCTVEETCVRDKAVESLCRIGSQMRESDLVD---WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS 166 (626)
Q Consensus 94 l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~---~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~ 166 (626)
++.|+...||..++.++..+++...|..++. .+-|+.... ...-...-.+....++.+++....+ +..+++-
T Consensus 561 gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgi-r~hrgk~laafLkAigyliplmd~eya~yyTrevml 639 (1172)
T KOG0213|consen 561 GLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGI-RQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVML 639 (1172)
T ss_pred hhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-HHccChHHHHHHHHHhhccccccHHHHHHhHHHHHH
Confidence 9999999999999999999999887743332 233333222 2111122223334455555544433 2344555
Q ss_pred HHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc--hhhhH---------------------------------------HH
Q 006898 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDI---------------------------------------MS 205 (626)
Q Consensus 167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l---------------------------------------l~ 205 (626)
.+..-.+.++.++++-.++.+.+.+...|-+. ...++ +.
T Consensus 640 il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~ 719 (1172)
T KOG0213|consen 640 ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVS 719 (1172)
T ss_pred HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHH
Confidence 55555566666666666666666665544210 01111 11
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHhhcccC------------------------------------------c--hhhhhh
Q 006898 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLE------------------------------------------P--QDCVAH 241 (626)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~------------------------------------------~--~~~~~~ 241 (626)
.+..-+.|+.+..|....++...+...+| . ..+.+.
T Consensus 720 R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpq 799 (1172)
T KOG0213|consen 720 RVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQ 799 (1172)
T ss_pred HHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHH
Confidence 12222344555555555555444433332 2 233444
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH--
Q 006898 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-- 316 (626)
Q Consensus 242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-- 316 (626)
+...+...++++++.||..++..++.++..+. ++....++--++.+.+..+.|+|-...+.++..+...+|....
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 55556667889999999999999998887653 3333445666677888888899999888888888887764422
Q ss_pred -HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHH---HHhhcCCCHHHHHHHHHhhHHHHhhhchh
Q 006898 317 -IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF---LSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (626)
Q Consensus 317 -~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~d~~~~vr~~a~~~L~~~~~~~~~~ 392 (626)
.+.++|.+...+++.+..|....+..++.++..-+........+.++ +.+|+..+.++|.+|..+++.+.+.+|+.
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq 959 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ 959 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH
Confidence 36678888888899999999999999999886533222223344443 44556778899999999999999999985
Q ss_pred hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH--
Q 006898 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-- 470 (626)
Q Consensus 393 ~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-- 470 (626)
.++..|++-++....+.|.+..-+++.+++.+++- .++|.++.--..++.+|++...++++.+++..|.-
T Consensus 960 ----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen 960 ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred ----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence 46777777777777778888888888888888764 36888888888899999999999999999987753
Q ss_pred HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc---cChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 471 WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 471 ~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~---~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
...-.+.|.+...+.|.+...|+.+..++.+++-. .+.+...-+++..+.-..-++.|.|.+....++..+...+|.
T Consensus 1032 dYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1032 DYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred hHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhch
Confidence 23356789999999999999999999999998754 344555666777777777799999999999999999999999
Q ss_pred chhhhcccchHHhhhccCCCccccc
Q 006898 548 SVSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 548 ~~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
..+.++++..|. .+...||.
T Consensus 1112 ~~~~~Y~~QGLF-----HParkVR~ 1131 (1172)
T KOG0213|consen 1112 QAMLKYCLQGLF-----HPARKVRK 1131 (1172)
T ss_pred HHHHHHHHHhcc-----CcHHHHHH
Confidence 877777776666 55566666
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.2e-21 Score=186.99 Aligned_cols=591 Identities=14% Similarity=0.161 Sum_probs=402.4
Q ss_pred HHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhh
Q 006898 16 DELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL 94 (626)
Q Consensus 16 ~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l 94 (626)
+.|.+.|++....-.+.+-.+ +...++++-..+.. +..+.|.+...++++++.++..--....|+.++..+..-
T Consensus 63 N~L~akd~~~k~~~~qRWl~l-----~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~n 137 (859)
T KOG1241|consen 63 NSLTAKDPERKQQYQQRWLQL-----PAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSN 137 (859)
T ss_pred hhhccCCHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHh
Confidence 344444554444444444322 22344555555555 456788888899999988876433345788888877776
Q ss_pred hcCcch-HHHHHHHHHHHHHHhhcChhhHHHh---HHHHHHHHh--cCCccchhHHHhhHhHHhcC----CCC-hHHHHH
Q 006898 95 CTVEET-CVRDKAVESLCRIGSQMRESDLVDW---YIPLVKRLA--AGEWFTARVSACGLFHIAYP----SAP-DILKTE 163 (626)
Q Consensus 95 ~~~~~~-~vR~~a~~~l~~i~~~~~~~~~~~~---l~~~l~~l~--~~~~~~~r~~a~~~l~~~~~----~~~-~~~~~~ 163 (626)
..++.+ .+|+.++++++.+++.+.|+.+.+. ++-.+.... ...+..+|.+|..++..... ++. +..++.
T Consensus 138 v~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~ 217 (859)
T KOG1241|consen 138 VGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY 217 (859)
T ss_pred cccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce
Confidence 666655 4999999999999999999865544 333333322 23467789888887765433 222 345667
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhccc-------
Q 006898 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL------- 233 (626)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~------- 233 (626)
++....+..+.++.+||.++..+|.++....-. ....+.++++-...+.+++++|...+++.+..+++.-
T Consensus 218 iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~ 297 (859)
T KOG1241|consen 218 IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEY 297 (859)
T ss_pred eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888889999999999999998875432 1223345566666678888999999999988766431
Q ss_pred Cc--h------------hhhhhhHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC
Q 006898 234 EP--Q------------DCVAHILPVIVNFS-------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN 292 (626)
Q Consensus 234 ~~--~------------~~~~~i~~~l~~~~-------~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 292 (626)
++ + .-.+.++|.+..++ .|.+|..-.++..||.-++...|.+.. +.++|.+.+-++.+
T Consensus 298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~p 376 (859)
T KOG1241|consen 298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNP 376 (859)
T ss_pred HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCc
Confidence 10 0 01235677776554 235799999999999999999997774 58889998899999
Q ss_pred hHHHHHHHHHhHHHHHHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc----HHHHHHhHHHHHHH
Q 006898 293 EAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLS 365 (626)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~ 365 (626)
+|.-|.+++.+++.+.+.-... .+....+|.+..+..|++-.||.++...++.++.... ........++.+..
T Consensus 377 dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~ 456 (859)
T KOG1241|consen 377 DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE 456 (859)
T ss_pred chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence 9999999999999988754433 2345677888888899999999999999999987654 33445567777888
Q ss_pred hhcCCCHHHHHHHHHhhHHHHhhhc---hh--------hHHhhHHHHHHHHhc--C-CChHHHHHHHHHHHHHHHhhChh
Q 006898 366 LLKDEFPDVRLNIISKLDQVNQVIG---ID--------LLSQSLLPAIVELAE--D-RHWRVRLAIIEYIPLLASQLGVG 431 (626)
Q Consensus 366 ~l~d~~~~vr~~a~~~L~~~~~~~~---~~--------~~~~~i~~~l~~~~~--~-~~~~~r~~~~~~l~~l~~~~~~~ 431 (626)
.++|. |.|-.++++++..+.+... .+ .+.+.|+..|.+... | .....|.++.+++..+.+.....
T Consensus 457 gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 457 GLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD 535 (859)
T ss_pred HhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence 88876 8888889998888875431 11 123455555555543 2 34689999999999999877655
Q ss_pred hHH--HHHHHHHHH----Hhc---------CCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcC-CChHHHH
Q 006898 432 FFD--DKLGALCMQ----WLQ---------DKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN-PHYLYRM 493 (626)
Q Consensus 432 ~~~--~~l~p~l~~----~l~---------d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~-~~~~vR~ 493 (626)
.+. ..+.+.++. .++ +...+++..-+.+|+.+...++.+. ..+.++..+..+++. .+..+-.
T Consensus 536 vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e 615 (859)
T KOG1241|consen 536 VYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHE 615 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchH
Confidence 432 222222222 221 1223566777888888888887752 347788888888887 4566788
Q ss_pred HHHHHHHHhccccChHH--hhhcHHHHHhhhC-CCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCC--
Q 006898 494 TILRAISLLAPVMGSEI--TCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVN-- 566 (626)
Q Consensus 494 ~a~~~l~~i~~~~~~~~--~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~-- 566 (626)
.+..+++.++..+|..+ +.+.+.|+|...+ +-.+..|-..|....|.+...++.+ ++.+.+...|. ..+..+
T Consensus 616 ~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lv-q~Lss~~~ 694 (859)
T KOG1241|consen 616 EAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLV-QCLSSPNL 694 (859)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHccCccc
Confidence 89999999999998865 6788999999988 5556678888999999999998875 45556666555 444333
Q ss_pred Cccccc----ccccCchhHHHHH------H---HHHHHH---HhhcCCcccccchhhHHHHHHh
Q 006898 567 NFNVGF----IFAAFPLVLFSCL------A---LNYCHR---WWRKQSVPVWLSSLRIQMLMSV 614 (626)
Q Consensus 567 d~~vr~----~~~~~~~~~~a~~------a---l~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 614 (626)
+++|+- +++.+.+.+-+.. . |.+..+ -..+.+.-.|.+.+|--||...
T Consensus 695 hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay 758 (859)
T KOG1241|consen 695 HRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAY 758 (859)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHH
Confidence 344444 4444443222111 0 111110 1123455678888888777654
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.91 E-value=1.4e-19 Score=202.64 Aligned_cols=562 Identities=13% Similarity=0.085 Sum_probs=390.1
Q ss_pred ccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhh------hhhhcccccc-ccCC---chHHHHHHHHHHhcccccc
Q 006898 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT------RKELIPFLSE-NNDD---DDEVLLAMAEELGVFIPYV 78 (626)
Q Consensus 9 ~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~------~~~l~~~l~~-~~~~---~~~vr~~~~~~l~~~~~~~ 78 (626)
..|+.|++-|++++...|..|..+|-.++..-..+.. ..-.+|.|.. +.+. +..++..+..+|.++...-
T Consensus 99 GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~ 178 (2102)
T PLN03200 99 GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST 178 (2102)
T ss_pred CChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc
Confidence 4677889999999999999999999999653210111 1334555555 3332 3346667778888887643
Q ss_pred CCcc---hhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcCh---hhHHHhHHHHHHHHhcC-CccchhHHHhhHhHH
Q 006898 79 GGVE---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAG-EWFTARVSACGLFHI 151 (626)
Q Consensus 79 ~~~~---~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~ 151 (626)
.+.. .....+|.+-.+++++++.++..|+.++..++...+. .......+|.+.+++.+ ++..+|..|+.++..
T Consensus 179 en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~n 258 (2102)
T PLN03200 179 DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEA 258 (2102)
T ss_pred cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 3211 1244778888888888999999999988888765432 22334577888888865 456889999999999
Q ss_pred hcCCCChH----HHHHHHHHHHHhcCCCC---------HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhh-------
Q 006898 152 AYPSAPDI----LKTELRSIYTQLCQDDM---------PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT------- 211 (626)
Q Consensus 152 ~~~~~~~~----~~~~l~~~l~~l~~d~~---------~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~------- 211 (626)
++.+.++. .....++.|..++..++ ...++.+..+|++++.... .+++.+.+.+
T Consensus 259 LAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~------~ll~~L~~ll~s~rd~~ 332 (2102)
T PLN03200 259 LSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMS------ALILYLGELSESPRSPA 332 (2102)
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCch------hhHHHHHHhhcccchHH
Confidence 88764331 11233456666655433 4468899999999887431 2222222222
Q ss_pred ----------------cCCchhHHH----HHHHHHHHhhcccCchhh----------------------hhhhHHHHHHh
Q 006898 212 ----------------QDDQDSVRL----LAVEGCAALGKLLEPQDC----------------------VAHILPVIVNF 249 (626)
Q Consensus 212 ----------------~d~~~~vr~----~a~~~l~~l~~~~~~~~~----------------------~~~i~~~l~~~ 249 (626)
++++...+. .+...|..++++-.+... .....+.+..+
T Consensus 333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~L 412 (2102)
T PLN03200 333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGL 412 (2102)
T ss_pred HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhh
Confidence 222111111 111222333322211110 11233444555
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH---HHHHhhHHH
Q 006898 250 SQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPC 323 (626)
Q Consensus 250 ~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~ 323 (626)
+...+..++..++.++..++..-. ........+|.+.++++..++++|..++..++.++...... ......+|.
T Consensus 413 L~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 413 ITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred hccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 555667888888888877763311 00112347899999999888999999999999887633221 233567899
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhhhhhcH--HHH-HHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHH
Q 006898 324 VKELSSDSSQHVRSALASVIMGMAPLLGK--DAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (626)
Q Consensus 324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~ 400 (626)
+.+++.+++..+|..++.++++++..-.. ... ....+|.+..+|++.++.++..|+.+|..+...-.. ..++
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~~I~ 567 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----ATIS 567 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----hHHH
Confidence 99999999999999999999999863111 112 224688899999999999999999999998765332 3457
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HH
Q 006898 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EW 471 (626)
Q Consensus 401 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~------~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~ 471 (626)
.+..++..++..++..+++.++.+......... ...-+|.+..++++++..+++.|++++..++..-.+ ..
T Consensus 568 ~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~av 647 (2102)
T PLN03200 568 QLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESL 647 (2102)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 778888888888888899999888765443321 134688999999999999999999999999864322 12
Q ss_pred HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH----HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 472 AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 472 ~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
.....+|.+..++.+.+..++..++++++++......+ ......+|.|..++++++..++..++.+|..+...-..
T Consensus 648 v~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~ 727 (2102)
T PLN03200 648 ATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV 727 (2102)
T ss_pred HHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH
Confidence 44678999999999999999999999999998643332 13456889999999999999999999999999887543
Q ss_pred c--hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898 548 S--VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH 591 (626)
Q Consensus 548 ~--~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~ 591 (626)
. ......++.|. +++.+.+.++|. .|..||..+.
T Consensus 728 ~~ei~~~~~I~~Lv-~lLr~G~~~~k~---------~Aa~AL~~L~ 763 (2102)
T PLN03200 728 AAEALAEDIILPLT-RVLREGTLEGKR---------NAARALAQLL 763 (2102)
T ss_pred HHHHHhcCcHHHHH-HHHHhCChHHHH---------HHHHHHHHHH
Confidence 2 23457789999 999999999999 9999987764
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.90 E-value=6.6e-20 Score=205.18 Aligned_cols=550 Identities=13% Similarity=0.111 Sum_probs=391.3
Q ss_pred ccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHh---hhhhhcccccc-cc-CCchHHHHHHHHHHhccccccCCcch
Q 006898 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEER---TRKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGVEH 83 (626)
Q Consensus 9 ~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~---~~~~l~~~l~~-~~-~~~~~vr~~~~~~l~~~~~~~~~~~~ 83 (626)
..++.|++.++++++..+..|...+..++...+... ...-.+|.|.+ +. ++++.+|..++.+|++++.. +.++
T Consensus 189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~--s~e~ 266 (2102)
T PLN03200 189 GGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ--SKEA 266 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC--CHHH
Confidence 467789999999999999999988877755422111 12344677766 33 35668999999999998762 2322
Q ss_pred h-----hcchHHHhhhhcCcc---------hHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccch-hHHHhhH
Q 006898 84 A-----HVLLPPLETLCTVEE---------TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTA-RVSACGL 148 (626)
Q Consensus 84 ~-----~~l~~~l~~l~~~~~---------~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~-r~~a~~~ 148 (626)
. ...+|.|..++..++ ...++.|+-+|+.++... ..++|.+.+++++....+ -..++..
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gA 340 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGA 340 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhh
Confidence 2 223444544444332 346888999999999875 346777777765542222 2234445
Q ss_pred hHHhcCCCC---hHHH----HHHHHHHHHhcCCCCHH-HHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhH
Q 006898 149 FHIAYPSAP---DILK----TELRSIYTQLCQDDMPM-VRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSV 218 (626)
Q Consensus 149 l~~~~~~~~---~~~~----~~l~~~l~~l~~d~~~~-vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~v 218 (626)
++.+...+. +... ..+.+.+.+++.++++. ++..+..+|..+..+..- -....+.++.+..++...+.++
T Consensus 341 Layll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~ev 420 (2102)
T PLN03200 341 LAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADV 420 (2102)
T ss_pred HHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHH
Confidence 544422221 1111 23457788888887665 477777777553322110 0112356778889999888999
Q ss_pred HHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCC
Q 006898 219 RLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDN 292 (626)
Q Consensus 219 r~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~ 292 (626)
+..++.++..++..-.. .......+|.+..++.+.+..+|..++..++.++..... .......+|.+.++++.+
T Consensus 421 Q~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~ 500 (2102)
T PLN03200 421 QEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG 500 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC
Confidence 99999999998866433 122344789999999999999999999999988752211 122346899999999999
Q ss_pred hHHHHHHHHHhHHHHHHhhC-hH-HH-HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC
Q 006898 293 EAEVRIAAAGKVTKFCRILN-PE-LA-IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD 369 (626)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~~~-~~-~~-~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 369 (626)
++.+|+.|+.++..++..-. .. .+ ....+|.+.+++++.+++++..++.++..+...-..+ .++.+..++..
T Consensus 501 ~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLls 575 (2102)
T PLN03200 501 SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLLG 575 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhcC
Confidence 99999999999999986311 11 12 2367888999999999999999999999987543222 23556677888
Q ss_pred CCHHHHHHHHHhhHHHHhhhchhhH------HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHH
Q 006898 370 EFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGAL 440 (626)
Q Consensus 370 ~~~~vr~~a~~~L~~~~~~~~~~~~------~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~ 440 (626)
+++.++..+++.++.+......+.. ....+|.|.+++++++.+++..+..++..++..... .......+|.
T Consensus 576 dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpP 655 (2102)
T PLN03200 576 DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINP 655 (2102)
T ss_pred CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHH
Confidence 8889999999999888664433321 135789999999999999999999999998864322 2334557888
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--Hhhhc
Q 006898 441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSR 514 (626)
Q Consensus 441 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~ 514 (626)
+..++.+.+..+|..++++|+.+......+ ......+|.|.+++++++..++..++.++.+++..-+.. .....
T Consensus 656 LV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~ 735 (2102)
T PLN03200 656 CIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAED 735 (2102)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcC
Confidence 999999999999999999999999743332 123567899999999999999999999999999865432 34467
Q ss_pred HHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccch------hhhcccchHHhhhccCCCccccc
Q 006898 515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV------STFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 515 ~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~------~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
.+|.|..++++.++.+|.+|+++|..+......+. .....+..|. .+++-.|.++..
T Consensus 736 ~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~-~~L~~~~~~~~~ 798 (2102)
T PLN03200 736 IILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALV-DLLNSTDLDSSA 798 (2102)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHH-HHHhcCCcchhh
Confidence 78999999999999999999999999998765432 2234555556 577766666655
No 14
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.90 E-value=6.2e-20 Score=176.53 Aligned_cols=547 Identities=16% Similarity=0.205 Sum_probs=367.5
Q ss_pred cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc--ccCCchHHHHHHHHHHhccccccCC--cchhh
Q 006898 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVGG--VEHAH 85 (626)
Q Consensus 10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~--~~~~~~~vr~~~~~~l~~~~~~~~~--~~~~~ 85 (626)
.+-.++-+.+++++..|.++++.|..-+.-.|+.-..+.++|.+.. +.|+. |....+.+..+.-.++. ..|.+
T Consensus 169 ~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqe---rhl~vk~idr~Ly~lddl~~pyvh 245 (975)
T COG5181 169 DVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQE---RHLVVKLIDRLLYGLDDLKVPYVH 245 (975)
T ss_pred hHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhh---hHhHHHHHHHHHHhccccccccee
Confidence 4556778889999999999999999988889998888999999987 33332 33333333222111110 00111
Q ss_pred ----------------------c-chHHHhh------------hhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHH
Q 006898 86 ----------------------V-LLPPLET------------LCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130 (626)
Q Consensus 86 ----------------------~-l~~~l~~------------l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l 130 (626)
+ +..+... =+.+.++-||+....+.+.+++.++- +.++|++
T Consensus 246 kILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl 321 (975)
T COG5181 246 KILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFL 321 (975)
T ss_pred eEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHH
Confidence 1 1111110 12445778888888888888888775 4588999
Q ss_pred HHHhcCC-ccchhHHHhhHhHHhcCCCCh---HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch--hhhHH
Q 006898 131 KRLAAGE-WFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL--KTDIM 204 (626)
Q Consensus 131 ~~l~~~~-~~~~r~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll 204 (626)
..++.+. +|..|..+.++...++...+- .+...++..+.+++.|.+..||..++.+++.+++..++-.. .+.++
T Consensus 322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl 401 (975)
T COG5181 322 EALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVL 401 (975)
T ss_pred HHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHH
Confidence 9998876 889999888777766655544 46678888999999999999999999999999999887322 23344
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHhhcccCchh---hhhhhHHHHHHhc----------------------CCCCHHHHH
Q 006898 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVNFS----------------------QDKSWRVRY 259 (626)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~----------------------~d~~~~vR~ 259 (626)
..+.+..+..--.+-.+-+++.+.+.....++. +....+.++.+.+ .+..|..|.
T Consensus 402 ~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~ 481 (975)
T COG5181 402 CPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRD 481 (975)
T ss_pred HHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHH
Confidence 443333332222222333444443333333210 1111122222212 223344443
Q ss_pred HHH-HHHHHHHHH--hC----------------CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH------
Q 006898 260 MVA-NQLYELCEA--VG----------------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE------ 314 (626)
Q Consensus 260 ~a~-~~l~~l~~~--~~----------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------ 314 (626)
... +.+..+... .+ +......+..-+++-++|+....|..++.+..++...+|..
T Consensus 482 ~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErl 561 (975)
T COG5181 482 QVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERL 561 (975)
T ss_pred hhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHH
Confidence 221 111111110 00 00012334555556667776666776666665555444310
Q ss_pred --------------------------------------HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh---cHH
Q 006898 315 --------------------------------------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL---GKD 353 (626)
Q Consensus 315 --------------------------------------~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~---~~~ 353 (626)
.+...++..+..++.++.+.+|..++..++.++..+ |+.
T Consensus 562 eerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~ 641 (975)
T COG5181 562 EERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET 641 (975)
T ss_pred HHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH
Confidence 112333444456678899999999998888877654 555
Q ss_pred HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh
Q 006898 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (626)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~---~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 430 (626)
....++-.++..-+....++|--..+.++..+....+-... ...++|.+..++++++..+....+..++.++.....
T Consensus 642 ~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe 721 (975)
T COG5181 642 KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE 721 (975)
T ss_pred HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc
Confidence 55667777788888888999988888888887776654422 257899999999999999999999999998875432
Q ss_pred hhHHHHHHHH---HHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC
Q 006898 431 GFFDDKLGAL---CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507 (626)
Q Consensus 431 ~~~~~~l~p~---l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~ 507 (626)
..-....+-+ +...+...+.++|++|..++|-+...+|+. .++..+++.++..+.+.|.+..-+++..++.++
T Consensus 722 yi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg 797 (975)
T COG5181 722 YIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG 797 (975)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC
Confidence 2111222222 445667789999999999999999999985 578888888888899999999999999999998
Q ss_pred hHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCccccc
Q 006898 508 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 508 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
+- .++|.++.-...++.+|+...++++.-+.+..|+. .+...+.|.|. ..+.|.|..-|.
T Consensus 798 pf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlle-DAltDrD~vhRq 859 (975)
T COG5181 798 PF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLE-DALTDRDPVHRQ 859 (975)
T ss_pred ch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH-hhhcccchHHHH
Confidence 74 57888888888999999999999999999999885 56678999999 889999998888
No 15
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=2.5e-19 Score=172.49 Aligned_cols=537 Identities=15% Similarity=0.112 Sum_probs=367.1
Q ss_pred hcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccC-CchHHHHHHHHHHhccccccCCc--chhhcchHHHhh
Q 006898 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGV--EHAHVLLPPLET 93 (626)
Q Consensus 18 l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~-~~~~vr~~~~~~l~~~~~~~~~~--~~~~~l~~~l~~ 93 (626)
+.+.|+.+|.-..++.+.++.++|- ++++|++.. +.+ ++.+-|+...++..++...+|.. .+...++.++..
T Consensus 290 i~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~ 365 (975)
T COG5181 290 ITSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISK 365 (975)
T ss_pred cccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHH
Confidence 4688999999999999999998884 688899987 544 36777888887777776665543 355667788888
Q ss_pred hhcCcchHHHHHHHHHHHHHHhhcChhhHHH---hHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH----HHHHHHH
Q 006898 94 LCTVEETCVRDKAVESLCRIGSQMRESDLVD---WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS 166 (626)
Q Consensus 94 l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~---~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~ 166 (626)
++.|+...||..++.+++.+++...|..+++ .+-|+.....+ ....+-.+.....+-+.+..+++ ...+...
T Consensus 366 ~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~ 444 (975)
T COG5181 366 LLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTREHME 444 (975)
T ss_pred HhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHHHHHH
Confidence 9999999999999999999999888743332 23333322221 11111122222333333433332 1233444
Q ss_pred HHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-----------------------------------------cchhhhHHH
Q 006898 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEP-----------------------------------------AHLKTDIMS 205 (626)
Q Consensus 167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-----------------------------------------~~~~~~ll~ 205 (626)
++...++.++...++............-+. ..-.+.+..
T Consensus 445 iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~ 524 (975)
T COG5181 445 IVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSR 524 (975)
T ss_pred HHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHH
Confidence 444444444333333222221111111000 000123444
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHhhcccCch--------------------------------------------hhhhh
Q 006898 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--------------------------------------------DCVAH 241 (626)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--------------------------------------------~~~~~ 241 (626)
-+....+|+.+..|..+..+...+...+|.. .+...
T Consensus 525 kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ 604 (975)
T COG5181 525 KILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSM 604 (975)
T ss_pred HHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHH
Confidence 5556667777777777777666655544421 12233
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHH---
Q 006898 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--- 315 (626)
Q Consensus 242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--- 315 (626)
++..+...+.++.+.||..++...+.++..+ |+......+-.++.+-+....|+|-...++++..+....+...
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqp 684 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQP 684 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCC
Confidence 4555566788999999999999888877654 3333344566677777888889998888888877766544321
Q ss_pred HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHH---HHHhhcCCCHHHHHHHHHhhHHHHhhhchh
Q 006898 316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI---FLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (626)
Q Consensus 316 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~ 392 (626)
-...++|.+...+.+++..|....+..++.++..-+...-....+.+ +...|+.-+.++|.+|..+++.+.+.+|++
T Consensus 685 Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq 764 (975)
T COG5181 685 PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ 764 (975)
T ss_pred chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH
Confidence 12567777777788889999888888888887543322112233333 345566778999999999999999999985
Q ss_pred hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH-
Q 006898 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW- 471 (626)
Q Consensus 393 ~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~- 471 (626)
.++..+.+-++..+.+.|....-+++.+++.+|+- .++|.++.--..++.+|++...+++..+++..|...
T Consensus 765 ----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~ 836 (975)
T COG5181 765 ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL 836 (975)
T ss_pred ----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 56677777777777778888888888888888874 367888888888999999999999999999887642
Q ss_pred -HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC---hHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 472 -AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 472 -~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~---~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
..-.+.|.+...+.|.++..|+.+...+.+++-.+. .+...-+++..+....-++.|.|....-+++..+...+|.
T Consensus 837 dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 837 DYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred HHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 335678999999999999999999999999976553 3445556677777777799999999999999999999998
Q ss_pred chhhhcccchHHhhhccCCCccccc
Q 006898 548 SVSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 548 ~~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
..+.+++...|. .|...||.
T Consensus 917 g~~m~Yv~qGLF-----HPs~~VRk 936 (975)
T COG5181 917 GAMMKYVQQGLF-----HPSSTVRK 936 (975)
T ss_pred HHHHHHHHHhcc-----CchHHHHH
Confidence 777667665555 56666666
No 16
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.5e-18 Score=169.66 Aligned_cols=471 Identities=14% Similarity=0.074 Sum_probs=346.1
Q ss_pred cCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcC-CccchhHHHhhHhHHhcCCCCh--HHHHHHHHHHHHhc
Q 006898 96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPD--ILKTELRSIYTQLC 172 (626)
Q Consensus 96 ~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~~--~~~~~l~~~l~~l~ 172 (626)
.|+...+|..-.++.......-+.+. ...+.|...+.++. .++..|.......+.+..+... .....++..+..-+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~-v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~ 105 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQN-VLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEEL 105 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHH-HHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhc
Confidence 67778888877777666655544433 34466666555543 3566777777777777766643 24456777888888
Q ss_pred CCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhh-hhhhHHHHHHhcC
Q 006898 173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC-VAHILPVIVNFSQ 251 (626)
Q Consensus 173 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~i~~~l~~~~~ 251 (626)
+-+++.+|++...++..+...... .-...+.+.+.++++...-.-|..+...+..+....+-+.. ...++..+.....
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~ 184 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAII 184 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhc
Confidence 999999999999999887765543 22356777777888877777888888888888777665332 3456777778888
Q ss_pred CCCHH-HHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhc
Q 006898 252 DKSWR-VRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS 328 (626)
Q Consensus 252 d~~~~-vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~ 328 (626)
|.... .|+.+..++......+|... +.-.++|.++.-+.|..+.||.++..+...+...+....+ +.++|.+..-+
T Consensus 185 dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l 263 (569)
T KOG1242|consen 185 DKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSL 263 (569)
T ss_pred ccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHH
Confidence 87655 44466677777777787543 2336777788888899999999999999999888877655 45555555444
Q ss_pred cCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh
Q 006898 329 SDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406 (626)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~ 406 (626)
.+..|+-+.++++.++.++...+. +...+.++|.+...++|..++||.++..++..++..+....+ +.++|.+.+.+
T Consensus 264 ~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l 342 (569)
T KOG1242|consen 264 LEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDAL 342 (569)
T ss_pred HHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHh
Confidence 445999999999999998877654 345778999999999999999999999999999998887775 67999999999
Q ss_pred cCCChHHHHHHHHHHHH-HHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh-HH---HhhhhHHHHH
Q 006898 407 EDRHWRVRLAIIEYIPL-LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EW---AMQHITPQVL 481 (626)
Q Consensus 407 ~~~~~~~r~~~~~~l~~-l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-~~---~~~~il~~l~ 481 (626)
.|++.++..+.-..... ++....+ .....++|++.+.+.+++...++.++..++.++....+ .+ +...++|.+.
T Consensus 343 ~dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk 421 (569)
T KOG1242|consen 343 ADPSCYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK 421 (569)
T ss_pred cCcccchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence 99985555443221111 1111111 22456899999999999999999999999999998843 32 3477888888
Q ss_pred hhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCch-HHHHHHHHHHHHHhhhccchhhhcccchHHh
Q 006898 482 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPN-IKFNVAKVLQSLIPIVDQSVSTFSVSPFSFM 560 (626)
Q Consensus 482 ~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~-vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~ 560 (626)
..+.|+.+.+|..+.++++.+.+..|...+ ....|.+....++.... -|..+++.++.....++...+.+.+-..+..
T Consensus 422 ~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~ 500 (569)
T KOG1242|consen 422 ENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILAN 500 (569)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHH
Confidence 888999999999999999999998887655 78888888887665544 5889999999999888876554333333331
Q ss_pred hhccCCCccccc
Q 006898 561 LYLNVNNFNVGF 572 (626)
Q Consensus 561 ~l~~d~d~~vr~ 572 (626)
......++.++.
T Consensus 501 ~~~~~~~~~~~d 512 (569)
T KOG1242|consen 501 ASSVLIDERIRD 512 (569)
T ss_pred Hhhccchhhhcc
Confidence 223344555666
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.88 E-value=4.7e-19 Score=187.22 Aligned_cols=498 Identities=18% Similarity=0.170 Sum_probs=360.0
Q ss_pred ccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcc
Q 006898 21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE 99 (626)
Q Consensus 21 ~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 99 (626)
.+...|..+++.+-.+ ...|.+. +.+.+.+.. +..++.+.++.+--.+..+... .++..-.+.+.+.+=+.+++
T Consensus 18 ~~~~~~~~~l~kli~~-~~~G~~~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l~~n~l~kdl~~~n 92 (526)
T PF01602_consen 18 IDISKKKEALKKLIYL-MMLGYDI--SFLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLILIINSLQKDLNSPN 92 (526)
T ss_dssp THHHHHHHHHHHHHHH-HHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHHHCSSS
T ss_pred CCHHHHHHHHHHHHHH-HHcCCCC--chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHhhcCCC
Confidence 3888888888888876 4555433 244444444 5577888888887777776652 33333445555666667899
Q ss_pred hHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHH
Q 006898 100 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMV 179 (626)
Q Consensus 100 ~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~v 179 (626)
+.+|-.|.++++.+. .....+.+.+.+.+++.++++.+|..|+.++..++...++.....+.+.+..++.|+++.|
T Consensus 93 ~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V 168 (526)
T PF01602_consen 93 PYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSV 168 (526)
T ss_dssp HHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHH
T ss_pred HHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchh
Confidence 999999999999886 2345566888899999999999999999999998877555433227889999999999999
Q ss_pred HHHHHHhHHHHHHhhCcc---chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHH
Q 006898 180 RRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWR 256 (626)
Q Consensus 180 R~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~ 256 (626)
+.+|+.++..+ + ..++ ...+.+.+.+.+.+.+.++..+...++.+..++...........+++.+...+++.++.
T Consensus 169 ~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~ 246 (526)
T PF01602_consen 169 VSAALSLLSEI-K-CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPS 246 (526)
T ss_dssp HHHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-c-cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccH
Confidence 99999999988 2 1222 34455666666667888888888888888766543332211145777777777788888
Q ss_pred HHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHH
Q 006898 257 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVR 336 (626)
Q Consensus 257 vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr 336 (626)
|+..++.++..+.. .......+++.+..++.+.++++|..++.++..++... +..+ ......+..+..+++..+|
T Consensus 247 V~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v-~~~~~~~~~l~~~~d~~Ir 321 (526)
T PF01602_consen 247 VVYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAV-FNQSLILFFLLYDDDPSIR 321 (526)
T ss_dssp HHHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHH-GTHHHHHHHHHCSSSHHHH
T ss_pred HHHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhh-hhhhhhhheecCCCChhHH
Confidence 88888887775432 12234567888999999999999999999999887754 2222 1222333444558889999
Q ss_pred HHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCC-CHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHH
Q 006898 337 SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415 (626)
Q Consensus 337 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~ 415 (626)
..+++.+..++.. .....+++.+...+.+. ++++|..++.+++.++..+..+. +..++.+.+++...+..+..
T Consensus 322 ~~~l~lL~~l~~~----~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~--~~~v~~l~~ll~~~~~~~~~ 395 (526)
T PF01602_consen 322 KKALDLLYKLANE----SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA--EWYVDTLLKLLEISGDYVSN 395 (526)
T ss_dssp HHHHHHHHHH--H----HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH--HHHHHHHHHHHHCTGGGCHC
T ss_pred HHHHHHHhhcccc----cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH--HHHHHHHHHhhhhccccccc
Confidence 9999988888743 33445777788888544 78899999999999998875543 56788888888887777788
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHH
Q 006898 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMT 494 (626)
Q Consensus 416 ~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~ 494 (626)
.++..+..+....... ....+..+...+.+ .++.++..+++++|..+...........++..+.+.+.+.+..+|..
T Consensus 396 ~~~~~i~~ll~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ 473 (526)
T PF01602_consen 396 EIINVIRDLLSNNPEL--REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQ 473 (526)
T ss_dssp HHHHHHHHHHHHSTTT--HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHhhcChhh--hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHH
Confidence 8888887777553322 23456666666665 66789999999999998887651134567777777788888899999
Q ss_pred HHHHHHHhccccChHHhhhcHHHHHhhhCC--CCCchHHHHHHHHHHHHH
Q 006898 495 ILRAISLLAPVMGSEITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLI 542 (626)
Q Consensus 495 a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~--d~~~~vR~~a~~~l~~i~ 542 (626)
++.++..+....+.+...+.+.+.+..+.+ +.+++||..|...+.-+-
T Consensus 474 ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 474 ILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 999999998877654455688888888888 889999999988776553
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.86 E-value=1.2e-18 Score=184.16 Aligned_cols=472 Identities=14% Similarity=0.114 Sum_probs=351.9
Q ss_pred cchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHH
Q 006898 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELR 165 (626)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~ 165 (626)
...+-..+++++++...|+.+--++..+...-+. ..-.....+.+-+.++++.+|..|.+.++.+. .++..+.+.
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~--~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~ 116 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE--LLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLI 116 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH--HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHH
Confidence 4555555666688888898888777777664332 22335566677778888999999999999886 567888999
Q ss_pred HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch--hhhhhhH
Q 006898 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHIL 243 (626)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~ 243 (626)
+.+.+++.|+++.||+.|+.++..+.+..+. .....+++.+.+++.|+++.|+..|+.++..+ +.-++. ...+.+.
T Consensus 117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~ 194 (526)
T PF01602_consen 117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLI 194 (526)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHH
Confidence 9999999999999999999999999987443 22222789999999999999999999999888 211111 3345555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhH
Q 006898 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 321 (626)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 321 (626)
..+.+.+.++++..+..+++.+..++.... ... ..+++.+..++++.++.|+..++.++..+.. .......++
T Consensus 195 ~~L~~~l~~~~~~~q~~il~~l~~~~~~~~--~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~~~~~~~~~ 269 (526)
T PF01602_consen 195 RILCQLLSDPDPWLQIKILRLLRRYAPMEP--EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP---SPELLQKAI 269 (526)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHTTSTSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHHHHHHHH
T ss_pred HHhhhcccccchHHHHHHHHHHHhcccCCh--hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc---chHHHHhhH
Confidence 666666688888888888887775543211 112 3578888888888888998888888775543 223457788
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHH
Q 006898 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (626)
Q Consensus 322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~ 401 (626)
+.+..++.++++.+|..+++.+..++........ .....+..+..|++..+|..++..+..++..-.. +.+++.
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~----~~Il~e 343 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV----KEILDE 343 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH----HHHHHH
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccch----hhHHHH
Confidence 8899999999999999999999999876522222 3233344445588999999999999888764332 457888
Q ss_pred HHHHhc-CCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHH
Q 006898 402 IVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480 (626)
Q Consensus 402 l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l 480 (626)
+.+.+. ..+..+|..++..+..++...... .+..++.++.++......+...+...+..+...... ....++..+
T Consensus 344 L~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~--~~~~~l~~L 419 (526)
T PF01602_consen 344 LLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE--LREKILKKL 419 (526)
T ss_dssp HHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT--THHHHHHHH
T ss_pred HHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh--hhHHHHHHH
Confidence 888874 447789999999999999877442 345778888999888888898999998888876433 245577888
Q ss_pred HhhhcC-CChHHHHHHHHHHHHhccccCh-HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchH
Q 006898 481 LEMINN-PHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFS 558 (626)
Q Consensus 481 ~~~l~~-~~~~vR~~a~~~l~~i~~~~~~-~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l 558 (626)
.+.+.+ .++..+..+++++|..+...+. + ....++..+.....+.++.||..+..++.++....+.....+.+.+.+
T Consensus 420 ~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~ 498 (526)
T PF01602_consen 420 IELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFL 498 (526)
T ss_dssp HHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHH
Confidence 877765 6778999999999999887765 3 456677777777778889999999999999998876555556788888
Q ss_pred Hhhhcc--CCCcccccccccCchhHHHHHHHHHH
Q 006898 559 FMLYLN--VNNFNVGFIFAAFPLVLFSCLALNYC 590 (626)
Q Consensus 559 ~~~l~~--d~d~~vr~~~~~~~~~~~a~~al~~~ 590 (626)
. .+.. +.|.+||. .|..-+.-+
T Consensus 499 ~-~~~~~~s~~~evr~---------Ra~~y~~ll 522 (526)
T PF01602_consen 499 L-SLATEDSSDPEVRD---------RAREYLRLL 522 (526)
T ss_dssp H-CHHHHS-SSHHHHH---------HHHHHHHHH
T ss_pred H-HHhccCCCCHHHHH---------HHHHHHHHH
Confidence 8 8877 88999999 777655443
No 19
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.4e-18 Score=167.25 Aligned_cols=515 Identities=16% Similarity=0.133 Sum_probs=365.5
Q ss_pred cccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhh-cCcchHHHHHHHHHHHHHHhhcChhhHHHh-H
Q 006898 50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMRESDLVDW-Y 126 (626)
Q Consensus 50 ~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~-l 126 (626)
++++.. -.|+.+.||....++.......- +.+....+.|.+..-+ ++.+..+|+..+---+.+..++...+...+ +
T Consensus 19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~-~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~ 97 (569)
T KOG1242|consen 19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQH-GDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI 97 (569)
T ss_pred ceeecccCCCcchhhHHhHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence 555544 35667778877776655443322 3445556677765544 445778888888777888887765433322 3
Q ss_pred HHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch-hhhHHH
Q 006898 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL-KTDIMS 205 (626)
Q Consensus 127 ~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~ll~ 205 (626)
+..+.+-.+.+...+|.++..++..+...........+.+.+.++++.....-|..++..+..+....+.+.. ...++.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~ 177 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLD 177 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHH
Confidence 4444445555677788888888887766665556677777888888877888899999988888877665433 235777
Q ss_pred HHHHhhcCCch-hHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 006898 206 IFEDLTQDDQD-SVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282 (626)
Q Consensus 206 ~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~ 282 (626)
.+.....|... ..|+.+..+.......+++ +.+.-.++|.+...+.|....||.++..+...+...+.... ...++
T Consensus 178 ~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a-VK~ll 256 (569)
T KOG1242|consen 178 NLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA-VKLLL 256 (569)
T ss_pred HHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch-hhHhh
Confidence 77888888755 4455677777777777775 55566667777777889999999999999888887765444 34566
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHH
Q 006898 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360 (626)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 360 (626)
|.++.-+.+..|....++++.++.++...+.. ...+.++|.+.+.+.|.++.||.++.+++..++....... ...++
T Consensus 257 psll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~i 335 (569)
T KOG1242|consen 257 PSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKII 335 (569)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHH
Confidence 66665555558888999999999887765544 4467889999999999999999999999999988776654 56788
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhHH--HHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh-Chh---hHH
Q 006898 361 PIFLSLLKDEFPDVRLNIISKLDQ--VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG---FFD 434 (626)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~L~~--~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~-~~~---~~~ 434 (626)
|.+..++.|+...+.. +...|+. +...+....+ ..++|.+.+-+.+.+...+..++..+..++... .+. .|.
T Consensus 336 p~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psL-almvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl 413 (569)
T KOG1242|consen 336 PTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSL-ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL 413 (569)
T ss_pred HHHHHHhcCcccchHH-HHHhhcceeeeeeecchhH-HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH
Confidence 9999999998755443 2233322 2222333222 567888888888888888888888899888877 333 244
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCC-ChHHHHHHHHHHHHhccccChHHhhh
Q 006898 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEITCS 513 (626)
Q Consensus 435 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~a~~~l~~i~~~~~~~~~~~ 513 (626)
+.++|-+...+.|..++||..+.++++.+.+..|...+ ....|.+.+...+. ....|..+++.++......+.+. ..
T Consensus 414 ~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~-~~ 491 (569)
T KOG1242|consen 414 PSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEK-VE 491 (569)
T ss_pred HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchH-HH
Confidence 66788888889999999999999999999999987754 77889998877654 56679999999999988877663 44
Q ss_pred cHHHHHhhhCCCC--CchHHHHHHHHHHHHHhhhcc--chhhhcccchHHhhhccCCCccccc
Q 006898 514 RLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ--SVSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 514 ~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~~~~--~~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
.++|.+....... ++.+|..-.+.+.-+-...+. .++...+++.+. +-+.|.|+.++.
T Consensus 492 ~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~-k~~ad~de~~~~ 553 (569)
T KOG1242|consen 492 DILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFL-KGLADNDEKGRD 553 (569)
T ss_pred HHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHH-HHhhhcCCcccc
Confidence 5555555544333 344777766666554333332 245556677666 666688888888
No 20
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.86 E-value=1.6e-17 Score=167.57 Aligned_cols=508 Identities=15% Similarity=0.137 Sum_probs=346.7
Q ss_pred CCchHHHHHHHHHH-hcccc---ccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHH
Q 006898 58 DDDDEVLLAMAEEL-GVFIP---YVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL 133 (626)
Q Consensus 58 ~~~~~vr~~~~~~l-~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l 133 (626)
++|-..|.+|..-| ..+-+ .+ +.+....++..+.++++|.+.+|.+.|++|++-+.+..+.++++..+-.++..+
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~L-d~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~ 94 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKL-DDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNM 94 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhc-cccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhh
Confidence 44455566665433 22221 11 123445677788888999999999999999999999998887776666666665
Q ss_pred hcCCccchhHHHhh---HhHHhcCCCC----hHHHHHHHHHHHHhcC--CCCHHHHHHHHHhHHHHHHhhCc--cchhhh
Q 006898 134 AAGEWFTARVSACG---LFHIAYPSAP----DILKTELRSIYTQLCQ--DDMPMVRRSAASNLGKFAATVEP--AHLKTD 202 (626)
Q Consensus 134 ~~~~~~~~r~~a~~---~l~~~~~~~~----~~~~~~l~~~l~~l~~--d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ 202 (626)
.+++....-.++.. .++++.+..+ ......+.+.+..... .+...+|-.++..++.+...+|. ..+...
T Consensus 95 ~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~ 174 (1233)
T KOG1824|consen 95 LSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLS 174 (1233)
T ss_pred ccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHH
Confidence 55543222223333 4444554332 2455666777666432 34566888899999888888775 346666
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccc
Q 006898 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMD 280 (626)
Q Consensus 203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ 280 (626)
++..+..-+..+...||+.++.+++.++..++...+...+-..+..+...++...-+..+++++.++...|.... ...
T Consensus 175 il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ 254 (1233)
T KOG1824|consen 175 ILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDK 254 (1233)
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccch
Confidence 777777777888889999999999999998888765555555555555555555555667999999999887653 347
Q ss_pred hHHHHHHhc---CCChHHHHHHHHHhHHHHHHhhChHH--HHHhhHHHHHHhc---------------------------
Q 006898 281 LVPAYVRLL---RDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELS--------------------------- 328 (626)
Q Consensus 281 l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~--------------------------- 328 (626)
++|.+.+.+ +..+.+.|+.++++++.|....+.+. +++.++..+.+.+
T Consensus 255 ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~ 334 (1233)
T KOG1824|consen 255 IVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQ 334 (1233)
T ss_pred hhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchh
Confidence 889888888 66778999999999999998876552 2233333332221
Q ss_pred -------cCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch--------
Q 006898 329 -------SDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-------- 391 (626)
Q Consensus 329 -------~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~-------- 391 (626)
+|-+|.||+++++++..+.....+ ..+...+-|.+..-+++.+++|+...+.+.-.+....++
T Consensus 335 ~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~ 414 (1233)
T KOG1824|consen 335 DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADN 414 (1233)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCc
Confidence 134699999999999887654322 235567889999999999999999888877666544321
Q ss_pred --------h---hHH----hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCCc--hHH
Q 006898 392 --------D---LLS----QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKV--YSI 452 (626)
Q Consensus 392 --------~---~~~----~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~--~~V 452 (626)
. ++. ..++..+.+.+++++-..|..++..+..+...+.... ....++|.+...+.|.+ .+.
T Consensus 415 d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ 494 (1233)
T KOG1824|consen 415 DAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNL 494 (1233)
T ss_pred hhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHH
Confidence 1 111 1233444444556666678888888888777654322 22457888888888865 456
Q ss_pred HHHHHHHHHHHHHHhChHHHh---hhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC---------hHHhhhcHHHHHh
Q 006898 453 RDAAANNLKRLAEEFGPEWAM---QHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---------SEITCSRLLPVVI 520 (626)
Q Consensus 453 R~~a~~~l~~l~~~~~~~~~~---~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~---------~~~~~~~~l~~l~ 520 (626)
+..+...+.......+++.+. ..+.|.+.....++-+++-..|+...+.+++.+. ...+...++....
T Consensus 495 ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl 574 (1233)
T KOG1824|consen 495 KIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTL 574 (1233)
T ss_pred HHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHH
Confidence 767777766666666665432 4566667777899999999999988888876542 2334455555555
Q ss_pred hhC--CCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCC
Q 006898 521 NAS--KDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVN 566 (626)
Q Consensus 521 ~~l--~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~ 566 (626)
+.+ +|.+.+||..|+.++|.++..+|+. ...+.++|.+.+++.++.
T Consensus 575 ~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi 624 (1233)
T KOG1824|consen 575 QRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI 624 (1233)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh
Confidence 544 6888899999999999999998853 334566777665666653
No 21
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.83 E-value=4.2e-15 Score=142.55 Aligned_cols=500 Identities=14% Similarity=0.103 Sum_probs=335.3
Q ss_pred cHHHHHHHHhhHHHHHHhhChHhhhh----hhcccccc--ccCCchHHHHHHHHHHhc-c--cc-ccCCcchhhcchHHH
Q 006898 22 DIQLRLNSIRRLSTIARALGEERTRK----ELIPFLSE--NNDDDDEVLLAMAEELGV-F--IP-YVGGVEHAHVLLPPL 91 (626)
Q Consensus 22 d~~~r~~a~~~l~~i~~~~~~~~~~~----~l~~~l~~--~~~~~~~vr~~~~~~l~~-~--~~-~~~~~~~~~~l~~~l 91 (626)
....+.+++.++++......|+.... -+...... -.+++..||.++.++|.. + ++ ....+...+.++...
T Consensus 147 p~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv 226 (858)
T COG5215 147 PVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV 226 (858)
T ss_pred chHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee
Confidence 44456666666666666555533221 12222222 245677899999988865 2 22 111234566777777
Q ss_pred hhhhcCcchHHHHHHHHHHHHHHhhcCh---hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCC----------CC-
Q 006898 92 ETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS----------AP- 157 (626)
Q Consensus 92 ~~l~~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~----------~~- 157 (626)
....+.++.++..+|..|+.+|....-. .-.++-+..+..+...++++.+...+.+..+.+++. ++
T Consensus 227 ceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe 306 (858)
T COG5215 227 CEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPE 306 (858)
T ss_pred ehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Confidence 7777888999999999999998875433 222333555666777888888888888877665531 11
Q ss_pred ---------hHHHHHHHHHHHHhcC-------CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHH
Q 006898 158 ---------DILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLL 221 (626)
Q Consensus 158 ---------~~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~ 221 (626)
.....+++|.+++++. +.+|.+-.+|..+|.-+++..|+... .-++.++.+-+..++|.-|.+
T Consensus 307 ~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~-~pVl~FvEqni~~~~w~nrea 385 (858)
T COG5215 307 VPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM-RPVLGFVEQNIRSESWANREA 385 (858)
T ss_pred CchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH-HHHHHHHHHhccCchhhhHHH
Confidence 0123557777777653 35789999999999999998876433 337777888899999999999
Q ss_pred HHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc-chHHHHH---HhcCCChH
Q 006898 222 AVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-DLVPAYV---RLLRDNEA 294 (626)
Q Consensus 222 a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~-~l~~~l~---~~l~d~~~ 294 (626)
++-+++.+.+.-.+ ..+.+..+|.+....+|+.-.|+..++.++|.++........+. ++.+... ..+.| .|
T Consensus 386 avmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p 464 (858)
T COG5215 386 AVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CP 464 (858)
T ss_pred HHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cc
Confidence 99999998876554 34677788889899999999999999999999998775443332 2333322 22334 34
Q ss_pred HHHHHHHHhHHHHHHhhChH---------HHHHhhHHHHHHhc--cCCCHHHHHHHHHHHHhhhhhhcHHH------HHH
Q 006898 295 EVRIAAAGKVTKFCRILNPE---------LAIQHILPCVKELS--SDSSQHVRSALASVIMGMAPLLGKDA------TIE 357 (626)
Q Consensus 295 ~vr~~a~~~l~~l~~~~~~~---------~~~~~l~~~l~~l~--~d~~~~vr~~~~~~l~~l~~~~~~~~------~~~ 357 (626)
.+...+......+...+.+. .+-..++..+.... .+.+...|.++.++++.+....+... +.+
T Consensus 465 ~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~ 544 (858)
T COG5215 465 FRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYD 544 (858)
T ss_pred hHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 55555555555555544322 11123333333221 24456789999999999887654321 111
Q ss_pred h-------HHHHHHHhhcCC----CHHHHHHHHHhhHHHHhhhch--hhHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHH
Q 006898 358 Q-------LLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPL 423 (626)
Q Consensus 358 ~-------l~~~l~~~l~d~----~~~vr~~a~~~L~~~~~~~~~--~~~~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~ 423 (626)
. .+....+.+.-+ ..++..+.+.-|..+....+. +...+.++..+.++++.. ...+-.....+++.
T Consensus 545 ~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsa 624 (858)
T COG5215 545 YTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISA 624 (858)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHH
Confidence 1 122222222222 245666666667777766666 445567888888888776 44556667778888
Q ss_pred HHHhhChhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCC--ChHHHHHHHH
Q 006898 424 LASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILR 497 (626)
Q Consensus 424 l~~~~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~--~~~vR~~a~~ 497 (626)
+...+++.+ +.+.+.|.+.+.++-.+..|-..|+..++.+...+|.++ ....++..|.+.+.++ ...++-+.+.
T Consensus 625 l~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLS 704 (858)
T COG5215 625 LSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILS 704 (858)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHH
Confidence 888776544 557899999999988889999999999999999999874 3467788888888776 4668999999
Q ss_pred HHHHhccccChHH--hhhcHHHHHhhhC
Q 006898 498 AISLLAPVMGSEI--TCSRLLPVVINAS 523 (626)
Q Consensus 498 ~l~~i~~~~~~~~--~~~~~l~~l~~~l 523 (626)
++|.|+..+|..+ +.+.++-.+.+..
T Consensus 705 vFgDIAlaiga~F~~YL~~im~L~qqas 732 (858)
T COG5215 705 VFGDIALAIGANFESYLDMIMMLFQQAS 732 (858)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 9999998888753 4566666555543
No 22
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.82 E-value=3e-18 Score=188.38 Aligned_cols=275 Identities=20% Similarity=0.182 Sum_probs=195.8
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 006898 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282 (626)
Q Consensus 203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~ 282 (626)
-++.|...++|+++.||..|+..|+.+. .+..++.|...++|+++.||..++.+|+.+..... -.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-------~~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-------PA 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-------ch
Confidence 3456667778888888888888887754 24466777778888888888888888877754322 12
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHH
Q 006898 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 362 (626)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 362 (626)
+.+...++++++.||..++.+|+.+.. +. ...+...+.|+++.||.+++.+++.+.. .+.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence 456667778888888888888877542 11 1234456788888888888888877531 123
Q ss_pred HHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 006898 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442 (626)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~ 442 (626)
+...+.|+++.||..++.+|+.+...- ....+.+..+++|+++.+|..++..|+.+... ....+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence 556788888888888888888775421 12356777888888888888888888775321 11234466
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhh
Q 006898 443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINA 522 (626)
Q Consensus 443 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~ 522 (626)
..+.|+++.||..|+.+|+.+.. ...++.|..+++|+++.||..++.+|+.+. + .+...+.|...
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a 878 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA 878 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence 77888888899888888876531 235677888888899999999999998872 1 13456677788
Q ss_pred CCCCCchHHHHHHHHHHH
Q 006898 523 SKDRVPNIKFNVAKVLQS 540 (626)
Q Consensus 523 l~d~~~~vR~~a~~~l~~ 540 (626)
++|+++.||..|..+|..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 888899999999888863
No 23
>PRK09687 putative lyase; Provisional
Probab=99.82 E-value=1.8e-18 Score=162.16 Aligned_cols=252 Identities=18% Similarity=0.159 Sum_probs=159.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHH
Q 006898 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 361 (626)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 361 (626)
.+.+...+.|++..||..++.+|+.+.. +.+++.+..+++|+++.+|..++..|+.+...-. .....+|
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHHHH
Confidence 3445556666677777777777666543 3345556666667777777777777776643110 0223455
Q ss_pred HHHHh-hcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHH
Q 006898 362 IFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 440 (626)
Q Consensus 362 ~l~~~-l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~ 440 (626)
.+..+ ++|+++.||..|+.+|+.++.... .+ ....++.+.....|++|++|..++.+++.+. .+..++.
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~~ 163 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNP-LY-SPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAIPL 163 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccccc-cc-chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHHHH
Confidence 55544 567777777777777776643211 01 1234455556667777777777777775432 1235667
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHh
Q 006898 441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI 520 (626)
Q Consensus 441 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~ 520 (626)
+...+.|+++.||..|+.+||.+. .+ .....+.|...+.|+++.||..++.+++.+.. ...+|.|.
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~Li 229 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVLI 229 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHHH
Confidence 777778888888888888887771 11 23466777777788888888888888876532 35677777
Q ss_pred hhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhcc-CCCcccccccccCchhHHHHHHHH
Q 006898 521 NASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLN-VNNFNVGFIFAAFPLVLFSCLALN 588 (626)
Q Consensus 521 ~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~-d~d~~vr~~~~~~~~~~~a~~al~ 588 (626)
..+++++ +|..++.+||++... ..+|.|. .+.+ ++|..|+. .|.+++.
T Consensus 230 ~~L~~~~--~~~~a~~ALg~ig~~--------~a~p~L~-~l~~~~~d~~v~~---------~a~~a~~ 278 (280)
T PRK09687 230 KELKKGT--VGDLIIEAAGELGDK--------TLLPVLD-TLLYKFDDNEIIT---------KAIDKLK 278 (280)
T ss_pred HHHcCCc--hHHHHHHHHHhcCCH--------hHHHHHH-HHHhhCCChhHHH---------HHHHHHh
Confidence 7777755 677777777776542 5677777 6654 77777777 6666554
No 24
>PRK09687 putative lyase; Provisional
Probab=99.81 E-value=5.8e-18 Score=158.74 Aligned_cols=253 Identities=19% Similarity=0.163 Sum_probs=180.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHH
Q 006898 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (626)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~ 244 (626)
.+.+...+.|++..||..++.+|+.+.. +.+.+.+..+++|+++.+|..++.+|+.+...-.. ....++
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHH
Confidence 3455566788999999999998876532 45677778888889999999999999887642111 245677
Q ss_pred HHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHH
Q 006898 245 VIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (626)
Q Consensus 245 ~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 323 (626)
.+..+ .+|+++.||.+++.+||.++... .......++.+...+.|+++.||..++.+|+.+.. +..++.
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~ 163 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKN--PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIPL 163 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccccc--cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHHH
Confidence 77665 78889999999999888875321 11123456666677788888899888888876543 345677
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHH
Q 006898 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (626)
Q Consensus 324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~ 403 (626)
|..+++|+++.||..++.+|+.+.. + .+...+.+...+.|.++.||..|+.+|+.+.. ...+|.|.
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~Li 229 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVLI 229 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHHH
Confidence 7788888888888888888888721 1 22456777888888888888888888887643 35777888
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHH
Q 006898 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKR 462 (626)
Q Consensus 404 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~ 462 (626)
+.++++++ |..++++++.+.. +..+|.+..+++ +++..|+..+.+++.+
T Consensus 230 ~~L~~~~~--~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 230 KELKKGTV--GDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHcCCch--HHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 88777664 4556666665532 246777777775 7777788777777643
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.81 E-value=2.7e-18 Score=188.72 Aligned_cols=275 Identities=20% Similarity=0.203 Sum_probs=219.4
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhH
Q 006898 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 321 (626)
Q Consensus 242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 321 (626)
.++.+...+.|+++.||..+++.|+.+. ....++.+...++|++++||..|+.+|..+.+.... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence 4566777889999999999999999765 355788899999999999999999999888653322 2
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHH
Q 006898 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (626)
Q Consensus 322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~ 401 (626)
+.+...++++++.||.+++..|+.+... . .+.+...|.|+++.||..|+.+|+.+.. .+.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRAG--D-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccC--C-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence 4455667889999999999998887421 1 1245678999999999999999998621 134
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHH
Q 006898 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481 (626)
Q Consensus 402 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~ 481 (626)
+...+.|+++.+|..+..+|..+...-. ...+.+..+++|+++.||.+|+.+|+.+... ..+.+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence 5677899999999999999988754211 1256788899999999999999999887421 22345678
Q ss_pred hhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhh
Q 006898 482 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFML 561 (626)
Q Consensus 482 ~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~ 561 (626)
..+.|++|.+|..++.+++.+.. +...+.|..+++|+++.||..|+.+|+.+. + .+...+.|. .
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~-~ 877 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALT-T 877 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHH-H
Confidence 88999999999999999997642 345688999999999999999999999962 1 135677888 8
Q ss_pred hccCCCcccccccccCchhHHHHHHHHH
Q 006898 562 YLNVNNFNVGFIFAAFPLVLFSCLALNY 589 (626)
Q Consensus 562 l~~d~d~~vr~~~~~~~~~~~a~~al~~ 589 (626)
.++|+|.+||. .|..||+.
T Consensus 878 al~D~d~~Vr~---------~A~~aL~~ 896 (897)
T PRK13800 878 ALTDSDADVRA---------YARRALAH 896 (897)
T ss_pred HHhCCCHHHHH---------HHHHHHhh
Confidence 89999999999 99999864
No 26
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.80 E-value=8.3e-15 Score=140.59 Aligned_cols=384 Identities=14% Similarity=0.106 Sum_probs=273.6
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcC-cchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHh
Q 006898 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA 134 (626)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~ 134 (626)
...+++.+|..+...+.++.. .++.+.+.-+.+-++.+ +++..|..|.-+|+.-...-.++...+
T Consensus 14 vLspD~n~rl~aE~ql~~l~~----~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~---------- 79 (858)
T COG5215 14 VLSPDPNARLRAEAQLLELQS----GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKG---------- 79 (858)
T ss_pred cCCCCCCccccHHHHHHHhcc----ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHH----------
Confidence 457888889888888777644 23434333333444433 467889888777765444333322111
Q ss_pred cCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC
Q 006898 135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD 214 (626)
Q Consensus 135 ~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~ 214 (626)
. ...+-..+.+.++++....+..+..+.++.-..|++.++.++..--+...|+.+...+.....|+
T Consensus 80 ---------~-----~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~e 145 (858)
T COG5215 80 ---------C-----SQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDE 145 (858)
T ss_pred ---------H-----HHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhcccc
Confidence 1 11122245677888888889999999999999999999999998777788899998888888888
Q ss_pred ch-hHHHHHHHHHHHhhcccCchhhh---hhhH-HHHHH-hcCCCCHHHHHHHHHHHHHHHHH----hCCCccccchHHH
Q 006898 215 QD-SVRLLAVEGCAALGKLLEPQDCV---AHIL-PVIVN-FSQDKSWRVRYMVANQLYELCEA----VGPEPTRMDLVPA 284 (626)
Q Consensus 215 ~~-~vr~~a~~~l~~l~~~~~~~~~~---~~i~-~~l~~-~~~d~~~~vR~~a~~~l~~l~~~----~~~~~~~~~l~~~ 284 (626)
.+ .++..++.+++..++...++... +.++ .++.. .-+.++..||-++..++..-... +..+...+.++..
T Consensus 146 qp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqv 225 (858)
T COG5215 146 QPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQV 225 (858)
T ss_pred CchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhhee
Confidence 66 67888999999999888774322 2222 22222 23556788999999998763322 2233334567777
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHHhhC---hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh----------c
Q 006898 285 YVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL----------G 351 (626)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~----------~ 351 (626)
.....+.++.+++.+++.++.++....- +...-+.+..+..+..++++..|...+.+.+..+++.- +
T Consensus 226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~p 305 (858)
T COG5215 226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP 305 (858)
T ss_pred eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Confidence 7777788889999999999988876321 11222333344456678999999999999998776421 1
Q ss_pred HH---------HHHHhHHHHHHHhhc-------CCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHH
Q 006898 352 KD---------ATIEQLLPIFLSLLK-------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415 (626)
Q Consensus 352 ~~---------~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~ 415 (626)
+. .....++|.++++|. ++++++..+|..+|.-+.+..|.... +.++..+.+-+++++|+-|.
T Consensus 306 e~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~-~pVl~FvEqni~~~~w~nre 384 (858)
T COG5215 306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM-RPVLGFVEQNIRSESWANRE 384 (858)
T ss_pred cCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH-HHHHHHHHHhccCchhhhHH
Confidence 00 013458899999885 24578999999999999988887655 45777777788999999999
Q ss_pred HHHHHHHHHHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhC
Q 006898 416 AIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (626)
Q Consensus 416 ~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~ 468 (626)
+++.+++.+...-.... +.++.+|.+...+.|+.-.|+..+++|++.+...+.
T Consensus 385 aavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 385 AAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred HHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence 99999999887554433 346678888889999999999999999999987653
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=99.80 E-value=7.8e-15 Score=153.86 Aligned_cols=491 Identities=12% Similarity=0.079 Sum_probs=262.7
Q ss_pred cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcch
Q 006898 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (626)
Q Consensus 10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~ 88 (626)
.+..|-+.|.+.|...|..+++.+-.. ..+|.+. ..+.+-+.. +..++.++|+.+--.+.++++. .++..-..+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~-mt~G~Dv--S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalLaI 107 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIAN-MTMGRDV--SYLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALLAV 107 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCCCc--hHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHHHH
Confidence 456666666666666666666555443 2333221 223222222 3445566666665555544431 122222233
Q ss_pred HHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHH
Q 006898 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (626)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l 168 (626)
+.+.+=+.|+++.+|-.|+++++.|.. ++..+.+.+.+
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~------------------------------------------~~i~e~l~~~l 145 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRV------------------------------------------SSVLEYTLEPL 145 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCc------------------------------------------HHHHHHHHHHH
Confidence 344444455666666666655544321 22333444455
Q ss_pred HHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHH-
Q 006898 169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV- 247 (626)
Q Consensus 169 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~- 247 (626)
.+++.|.++.||+.|+.++.++....+.-.....+++.+.+++.|+++.|...|+.+|..+.+..+.. .....+.+.
T Consensus 146 kk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~ 223 (746)
T PTZ00429 146 RRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNR 223 (746)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHH
Confidence 55666666666666666666665543321112235555666666666666666666666665443321 111122222
Q ss_pred --HhcCCCCHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH---HHhhH
Q 006898 248 --NFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA---IQHIL 321 (626)
Q Consensus 248 --~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~ 321 (626)
..+.+-+.--+....+.+ ....+.+ .....++..+...++..++.|..+|++++-.+....+++.. ...+-
T Consensus 224 Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~ 300 (746)
T PTZ00429 224 LVYHLPECNEWGQLYILELL---AAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVN 300 (746)
T ss_pred HHHHhhcCChHHHHHHHHHH---HhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 222222222333333333 2221111 11234666666666777777777777777666544332211 11222
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHH
Q 006898 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (626)
Q Consensus 322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~ 401 (626)
+.+..+ .+.++.+|..+++.+..+....+ ..+... +..++-..+|+.. ||...+..|..++..-.. +.++..
T Consensus 301 ~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~-~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~Nv----~~IL~E 372 (746)
T PTZ00429 301 TALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTN-LDSFYVRYSDPPF-VKLEKLRLLLKLVTPSVA----PEILKE 372 (746)
T ss_pred HHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHH-HHhhhcccCCcHH-HHHHHHHHHHHHcCcccH----HHHHHH
Confidence 333444 34566778777777766665432 222222 4445555566654 777777777766543222 456667
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHH
Q 006898 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481 (626)
Q Consensus 402 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~ 481 (626)
|.+...+.+..++..++.+++.++..+. ...+.++..+..++.++.. +...++..+..+.+.+... .+++.+.
T Consensus 373 L~eYa~d~D~ef~r~aIrAIg~lA~k~~--~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~----~il~~L~ 445 (746)
T PTZ00429 373 LAEYASGVDMVFVVEVVRAIASLAIKVD--SVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL----LMLDTLV 445 (746)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH----HHHHHHH
Confidence 7777777777888888888888875543 2345667777777766544 3345677777777665443 2445554
Q ss_pred hhh---cCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchH
Q 006898 482 EMI---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFS 558 (626)
Q Consensus 482 ~~l---~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l 558 (626)
..+ .-.++..|.+.++.+|..++.+.. ...++..+..-..+..+.||...+.+..++.-..+.. ....+...|
T Consensus 446 ~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL 521 (746)
T PTZ00429 446 TDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVL 521 (746)
T ss_pred HhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHH
Confidence 432 124677888888888887765432 1334433344445567788888888888877664422 223344455
Q ss_pred Hhhh-ccCCCccccc
Q 006898 559 FMLY-LNVNNFNVGF 572 (626)
Q Consensus 559 ~~~l-~~d~d~~vr~ 572 (626)
. .+ ..+.|++||.
T Consensus 522 ~-~~t~~~~d~DVRD 535 (746)
T PTZ00429 522 E-TVTTHSDDPDVRD 535 (746)
T ss_pred H-HHHhcCCChhHHH
Confidence 4 44 3456678888
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=3.8e-16 Score=165.45 Aligned_cols=520 Identities=18% Similarity=0.182 Sum_probs=343.6
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcc----hhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHH
Q 006898 56 NNDDDDEVLLAMAEELGVFIPYVGGVE----HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVK 131 (626)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~ 131 (626)
+-+++|..|++...+|-.++.++|... ..+.+...+..+++|.++-+...|.+.++-+.+.-+.......+-.++.
T Consensus 827 ~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~ 906 (1702)
T KOG0915|consen 827 LTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVN 906 (1702)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHH
Confidence 567899999999999988888888432 3455667788899999999999999999877664333222222233344
Q ss_pred HHhcCCccchhH------HHhhHh------------HHhcCCCChHHHHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHH
Q 006898 132 RLAAGEWFTARV------SACGLF------------HIAYPSAPDILKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAA 192 (626)
Q Consensus 132 ~l~~~~~~~~r~------~a~~~l------------~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~ 192 (626)
.++.++...... ..-..+ -+++.-.++-.+++++--|.++.++ ..|.-|+.|+..++.++.
T Consensus 907 tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~ 986 (1702)
T KOG0915|consen 907 TLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAK 986 (1702)
T ss_pred HHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHH
Confidence 444332110000 000111 1111111122345677777777765 478999999999999998
Q ss_pred hhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006898 193 TVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 268 (626)
Q Consensus 193 ~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l 268 (626)
..+. +.+...++|.+.+.-.|++..|+.+....+..+...-.. +.+.++|+.-+...+.+..|+||++++-++..+
T Consensus 987 ~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen 987 QAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADL 1066 (1702)
T ss_pred HHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 8765 466778999999999999999999999999888765433 567788888888889999999999999999998
Q ss_pred HHHhCCCccccchHHH---HHHhcCCChHHHHHHHHHhHHHHHHhh---C-------hHHHHHhhHHHHHH-hccCCCHH
Q 006898 269 CEAVGPEPTRMDLVPA---YVRLLRDNEAEVRIAAAGKVTKFCRIL---N-------PELAIQHILPCVKE-LSSDSSQH 334 (626)
Q Consensus 269 ~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~---~-------~~~~~~~l~~~l~~-l~~d~~~~ 334 (626)
...-+.+...+.+..+ +...+.|-...||.++-.+...+++.+ . ...+...++|.+.. ..-++-..
T Consensus 1067 l~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~e 1146 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNE 1146 (1702)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHH
Confidence 8765544444444444 444556766889988766665555433 1 22456788888764 33467789
Q ss_pred HHHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhhcCCCHHH-------------------HHHHH------HhhHHHHh
Q 006898 335 VRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDV-------------------RLNII------SKLDQVNQ 387 (626)
Q Consensus 335 vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~v-------------------r~~a~------~~L~~~~~ 387 (626)
||...+..+..+++..|.. .+.+.++|.+...+..-++.| |..++ ++++.+.+
T Consensus 1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 9999999999999887763 356678888877776544333 33322 23344444
Q ss_pred hhchhhHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898 388 VIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 388 ~~~~~~~~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
.++...+ ++++|.+.++++.. .-..|..+..++..++..+|.+. +...++..++..+.|.+..+|.+-+.+.|.+.
T Consensus 1227 ~iD~~vL-eelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1227 YIDISVL-EELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred hhhHHHH-HHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 4444444 67899999888654 56778889999999998887653 56778999999999999999999999999999
Q ss_pred HHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh--HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHH
Q 006898 465 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (626)
Q Consensus 465 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~ 542 (626)
..-.++.....+-..+...+.+.+. .+..++..+.+|+.+... +.+...++|.+.-..++. -..-...+.++.
T Consensus 1306 k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee----~Ka~q~Lw~dvW 1380 (1702)
T KOG0915|consen 1306 KFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE----EKANQELWNDVW 1380 (1702)
T ss_pred hcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH----HHHHHHHHHHHH
Confidence 8877654333333334444544332 224445555555544332 235677888777666554 112223333333
Q ss_pred hhhcc--c-----hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898 543 PIVDQ--S-----VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH 591 (626)
Q Consensus 543 ~~~~~--~-----~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~ 591 (626)
..+-+ . .....+.+... ...++..+.+|. .+..++..+.
T Consensus 1381 ~e~vsggagtvrl~~~eiLn~ice-ni~nn~~w~lr~---------q~Akai~~~a 1426 (1702)
T KOG0915|consen 1381 AELVSGGAGTVRLYLLEILNLICE-NITNNESWKLRK---------QAAKAIRVIA 1426 (1702)
T ss_pred HHhCCCCcchhhhhHHHHHHHHHH-HhccchHHHHHH---------HHHHHHHHHc
Confidence 22211 1 12233444444 667777788888 7777766654
No 29
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=5e-16 Score=148.79 Aligned_cols=391 Identities=16% Similarity=0.177 Sum_probs=300.6
Q ss_pred HHHhcCCCCHHHHHHHHHhHHHHHHhhCccch---hhhHHH-HHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhh
Q 006898 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHL---KTDIMS-IFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAH 241 (626)
Q Consensus 168 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~ll~-~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ 241 (626)
+...+.|...+-|++++..+..++..+-...- ..+++. ............-|++++-.+.+.+-..|. ..+...
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 34567888889999999999999887655433 333444 333445556667788888888888777766 347888
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH----H
Q 006898 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----L 315 (626)
Q Consensus 242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~ 315 (626)
++|.+...++|.+..||..+++.+..+++....+. +.+.+...+.++..|.+..||.+ ++.+..+.+.+..+ .
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhcccccccc
Confidence 89999999999999999999999999999876553 34578888889999999888865 46677766655322 3
Q ss_pred HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH--HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhh
Q 006898 316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (626)
Q Consensus 316 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~ 393 (626)
-.+.++|.+.+-+...++..|..+.+++..+-..-+-+. +.+.+++.++++|.|+..+||..+-.+++++...+..+.
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 357889999999999999999999999998876655443 467899999999999999999999999998887664322
Q ss_pred ---HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHh
Q 006898 394 ---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEF 467 (626)
Q Consensus 394 ---~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~-~VR~~a~~~l~~l~~~~ 467 (626)
-...+++.+..-+.+++..++..++.++..+.+..|.... .+.++..++.++.|++. .++..+...-+.+...+
T Consensus 244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 1245777777778899999999999999999988877643 35666777778888777 57877776665665554
Q ss_pred ChHH-----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH--hhhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898 468 GPEW-----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQS 540 (626)
Q Consensus 468 ~~~~-----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 540 (626)
+.+. -...++..+.+.+.+....+|.+++.++..+-...+.+. +.+.+.+.|++.+.|++++|-..+...+..
T Consensus 324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 4332 225788888889999999999999999999988777664 456789999999999999999999999999
Q ss_pred HHhhhccchhhhcccchHH
Q 006898 541 LIPIVDQSVSTFSVSPFSF 559 (626)
Q Consensus 541 i~~~~~~~~~~~~i~~~l~ 559 (626)
++..-....+.+.+...|.
T Consensus 404 i~~s~~~~~~~~fl~sLL~ 422 (675)
T KOG0212|consen 404 ICSSSNSPNLRKFLLSLLE 422 (675)
T ss_pred HhcCcccccHHHHHHHHHH
Confidence 8865433223333333333
No 30
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=4.1e-15 Score=142.61 Aligned_cols=415 Identities=15% Similarity=0.115 Sum_probs=299.3
Q ss_pred hhhcCcchHHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCCh---HHHHHHH
Q 006898 93 TLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTELR 165 (626)
Q Consensus 93 ~l~~~~~~~vR~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~~~~l~ 165 (626)
+.++|.-.+-|++|+.-+..+.+.+-. ..+.+.+-.+......+.+...|.++.-.++...-..+. .+.+.++
T Consensus 7 r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv 86 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIV 86 (675)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhh
Confidence 344566667788888788777775533 222222333455555555555666544444443322322 3788899
Q ss_pred HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch----hhh
Q 006898 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCV 239 (626)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~ 239 (626)
+....+++|++.+||..||+++-++++....+ .+.+++...+.++..|.+..||. +.+.+..+.+....+ -..
T Consensus 87 ~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL 165 (675)
T KOG0212|consen 87 PPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSL 165 (675)
T ss_pred HHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCH
Confidence 99999999999999999999999999988764 34578889999999999999986 556777776655432 246
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--H
Q 006898 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--L 315 (626)
Q Consensus 240 ~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~ 315 (626)
+.++|.+...+.+.++.+|...+..+..+-..-+-+. +...+++.+.++++|+.++||.-+-.+++.+...+..+ .
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 7899999999999999999999988876654322221 24578999999999999999999999998888866432 1
Q ss_pred -HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHH--HHhHHHHHHHhhcCCCH-HHHHHHHHhhHHHHhhhch
Q 006898 316 -AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGI 391 (626)
Q Consensus 316 -~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-~vr~~a~~~L~~~~~~~~~ 391 (626)
-.+..++.+..-+.++++.++..++.++..+.+..|.+.. ...++..++.++.|.++ .++..+...=+.+....+.
T Consensus 246 ~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~ 325 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS 325 (675)
T ss_pred cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence 1245677777777889999999999999999998887643 44566677777777766 4665555443344433333
Q ss_pred hhH-----HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898 392 DLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 392 ~~~-----~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
+.. ...++..+.+.+.+.....|.+++.++..+....+.+.+ .+.+.+.++..+.|+...|-..+...++.++
T Consensus 326 ~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 326 ERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred hhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence 221 246888888999999999999999999999888776654 3678999999999999999999999999999
Q ss_pred HHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH
Q 006898 465 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509 (626)
Q Consensus 465 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~ 509 (626)
..-... ....++..+.+++..+..-.+..+...+.+++-.+.++
T Consensus 406 ~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE 449 (675)
T KOG0212|consen 406 SSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAE 449 (675)
T ss_pred cCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHH
Confidence 764432 23445666666666655555555555666666555554
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=99.72 E-value=1.1e-12 Score=137.80 Aligned_cols=475 Identities=11% Similarity=0.050 Sum_probs=314.7
Q ss_pred CCCCCCcccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCc
Q 006898 2 AMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV 81 (626)
Q Consensus 2 ~~~~~~~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~ 81 (626)
..|.|.-.-....+..+.++|...|....--+...+... ++...--+-.+.+++.|++|.+|..+.+.++.+. .+
T Consensus 61 t~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir----~~ 135 (746)
T PTZ00429 61 TMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR----VS 135 (746)
T ss_pred HCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----cH
Confidence 344444444556777899999999998887777775432 3322222223334488999999999999999763 36
Q ss_pred chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH--
Q 006898 82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-- 159 (626)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-- 159 (626)
...+.+.+.+.+.++|+++.||+.|+-|+.++....+.-.....+.+.+.+++.|.++.|...|...+..+....+..
T Consensus 136 ~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~ 215 (746)
T PTZ00429 136 SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE 215 (746)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH
Confidence 677888888999999999999999999999998765532223457778888899999999999999998887665432
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh-
Q 006898 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD- 237 (626)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~- 237 (626)
.....+..++..+.+-+++-+-..++.|.. ..+. +.....++..+...+++.++.|...|++++-.+.....++.
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~ 292 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI 292 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH
Confidence 112233334444455556666666666643 2222 22234577778888888899999999999988876543321
Q ss_pred --hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHH
Q 006898 238 --CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL 315 (626)
Q Consensus 238 --~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 315 (626)
....+.+.+..+ .+.++++|..+...+..+....+. .+..+ +..|.-..+|+. .+|...+..|..++..-..
T Consensus 293 ~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~-lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~Nv-- 366 (746)
T PTZ00429 293 ERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPN-LLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTPSVA-- 366 (746)
T ss_pred HHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHH-HHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCcccH--
Confidence 112233434444 456778999999998877765431 11111 333444456765 5888888888777653333
Q ss_pred HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHH
Q 006898 316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 395 (626)
Q Consensus 316 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~ 395 (626)
+.++.-+.+...+.+..++..++++++.++..++. ..+.++..+..++.+... +...++..+..+.+.....
T Consensus 367 --~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~--- 438 (746)
T PTZ00429 367 --PEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL--- 438 (746)
T ss_pred --HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH---
Confidence 44566666777788999999999999999876643 466788888888876544 3345677777776655432
Q ss_pred hhHHHHHHHHh---cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH
Q 006898 396 QSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 472 (626)
Q Consensus 396 ~~i~~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~ 472 (626)
.+++.+.... .-.+...|.+.+-.++..++.... ...++..+..-+.+....||.+...+..++.-....+ .
T Consensus 439 -~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~ 513 (746)
T PTZ00429 439 -LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-M 513 (746)
T ss_pred -HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-H
Confidence 2445554432 123567788878888877664432 2234444455556778899999998888887765433 2
Q ss_pred hhhhHHHHHh-hhc-CCChHHHHHHHHHHHHhcc
Q 006898 473 MQHITPQVLE-MIN-NPHYLYRMTILRAISLLAP 504 (626)
Q Consensus 473 ~~~il~~l~~-~l~-~~~~~vR~~a~~~l~~i~~ 504 (626)
...+..+.+ +.+ +.|+++|-.|.....-+..
T Consensus 514 -~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~ 546 (746)
T PTZ00429 514 -EPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSK 546 (746)
T ss_pred -HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcC
Confidence 334444553 334 5788999888876665543
No 32
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=4.4e-13 Score=142.75 Aligned_cols=443 Identities=17% Similarity=0.155 Sum_probs=291.0
Q ss_pred hHHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC---hHHHHHHHHHHHHhcCC
Q 006898 100 TCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---DILKTELRSIYTQLCQD 174 (626)
Q Consensus 100 ~~vR~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~---~~~~~~l~~~l~~l~~d 174 (626)
+.-|..|+-.++.|++..+. +.....++|-+.+.--|++..++.+-..+...+..... +++..+|+.-++..+.+
T Consensus 971 wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTS 1050 (1702)
T ss_pred hhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc
Confidence 44566777777777776543 23344577877777788888888888888887766533 35778899999999999
Q ss_pred CCHHHHHHHHHhHHHHHHhhCccchhh---hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----------hhhhhh
Q 006898 175 DMPMVRRSAASNLGKFAATVEPAHLKT---DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----------QDCVAH 241 (626)
Q Consensus 175 ~~~~vR~~a~~~l~~l~~~~~~~~~~~---~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~ 241 (626)
..|+||.++|.++..+.+.-+.+.+.+ ++...+.+.+.|-.+.||.+|-++...+++.+-. ......
T Consensus 1051 kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~ 1130 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDI 1130 (1702)
T ss_pred hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHH
Confidence 999999999999999998766554444 4445556667777889999887776666654321 345677
Q ss_pred hHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCChHHH-------------------HHH
Q 006898 242 ILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEV-------------------RIA 299 (626)
Q Consensus 242 i~~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~v-------------------r~~ 299 (626)
++|++.. ..-++...||+.++..+..+++..|+..- ..+++|.++...+.-++.| |..
T Consensus 1131 iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s 1210 (1702)
T KOG0915|consen 1131 ILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRAS 1210 (1702)
T ss_pred HHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 8888753 34477889999999999999999887643 3478888888776555443 333
Q ss_pred HHHh------HHHHHHhhChHHHHHhhHHHHHHhccC-CCHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhhcCC
Q 006898 300 AAGK------VTKFCRILNPELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDE 370 (626)
Q Consensus 300 a~~~------l~~l~~~~~~~~~~~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~ 370 (626)
+++. +..+...++.. +.++++|.+.++... -.-..|..++..+..+...+|.+ .+...++..++..++|.
T Consensus 1211 ~aksspmmeTi~~ci~~iD~~-vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dR 1289 (1702)
T KOG0915|consen 1211 AAKSSPMMETINKCINYIDIS-VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDR 1289 (1702)
T ss_pred hhcCCcHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccc
Confidence 2222 22222222332 357788888877653 33456778888888888877765 45678999999999999
Q ss_pred CHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcCC
Q 006898 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDK 448 (626)
Q Consensus 371 ~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~ 448 (626)
++.+|++.+.+.+.+...-.++...+.+-..+..++.+.+.. +..++..+..+++.... +...+.++|..+-..++.
T Consensus 1290 Nesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~-~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1290 NESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESL-KSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred cHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCc-cchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH
Confidence 999999999999999988877766443444444555443321 13333333334433221 123467899877766554
Q ss_pred chHHHHHHHHHHHHHHHHhCh--HHHhhhhHHHH-HhhhcCCChHHHHHHHHHHHHhccccCh---HHhhhcHHHHHhhh
Q 006898 449 VYSIRDAAANNLKRLAEEFGP--EWAMQHITPQV-LEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINA 522 (626)
Q Consensus 449 ~~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l-~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~~l~~l~~~ 522 (626)
+.+...-=-+.|..++..-.. .....+++..+ .+..++..|..|..++.++..++..... .+..-.+.+.+...
T Consensus 1369 ~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~ 1448 (1702)
T KOG0915|consen 1369 EKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDT 1448 (1702)
T ss_pred HHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHH
Confidence 222222112222222221111 11234444444 4456777899999999999988875432 23455666777777
Q ss_pred CCCCCchHHHHHHHHHHHHHhh
Q 006898 523 SKDRVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 523 l~d~~~~vR~~a~~~l~~i~~~ 544 (626)
+....++-+....+++......
T Consensus 1449 L~GRiwdGKe~iLKAl~~~~~a 1470 (1702)
T KOG0915|consen 1449 LNGRIWDGKEEILKALASAFEA 1470 (1702)
T ss_pred hhccccccHHHHHHHHHHHHHH
Confidence 7777777666666666644433
No 33
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=1.6e-15 Score=157.26 Aligned_cols=282 Identities=18% Similarity=0.176 Sum_probs=173.3
Q ss_pred CHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc------hhhhhhhHHHHHHh
Q 006898 176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNF 249 (626)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~~ 249 (626)
...-|.+|++.|..++.....+...+.++|++..++.|++..||..|+.++..+...+.+ ..+.++++|.+..+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 356778888889999888888888889999999999999999999999988887765543 34678899999999
Q ss_pred cCC-CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHH-----hcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHH
Q 006898 250 SQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR-----LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (626)
Q Consensus 250 ~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-----~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 323 (626)
..| ....||.+.+.+|+.++...- .++..-.. +++|.+.+ +.+.-....+...+.+.+-..
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~------rFle~~q~~~~~g~~n~~nse-------t~~~~~~~~~~~~L~~~V~~~ 582 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAY------RFLELTQELRQAGMLNDPNSE-------TAPEQNYNTELQALHHTVEQM 582 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHH------HHHHHHHHHHhcccccCcccc-------cccccccchHHHHHHHHHHHH
Confidence 888 667799999999998886421 01110000 12232222 000000000111122333344
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHH
Q 006898 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (626)
Q Consensus 324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~ 403 (626)
+..++.|+.+.||+++.+.+..++..||++...+.+++++...|+|.|+..|.+....+..++-.+|.....+.++|.+.
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~ 662 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQ 662 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666665555555544455666666
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 404 ELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 404 ~~~~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
+.+.|+...|-..++.++..+.+.-- .+...-.++.....++-.++.+||.+++..+..+...++..
T Consensus 663 Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 663 QGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred HhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 66666666666666666666554211 11112234444455555666666666666666666555443
No 34
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=2.8e-15 Score=155.52 Aligned_cols=302 Identities=21% Similarity=0.242 Sum_probs=226.1
Q ss_pred HHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC------C
Q 006898 203 IMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP------E 275 (626)
Q Consensus 203 ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~------~ 275 (626)
+++.+...+.. .....|..|++.+..++.....+...+.++|++..++.|+...||..|+.++..+.....+ .
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 44444444433 2456778899999999998888888999999999999999999999999988887665432 2
Q ss_pred ccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHH--hccCCCHHHHHHHHHHHHhhhhhhcH
Q 006898 276 PTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE--LSSDSSQHVRSALASVIMGMAPLLGK 352 (626)
Q Consensus 276 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~--l~~d~~~~vr~~~~~~l~~l~~~~~~ 352 (626)
.+.+.++|.+..++.| ....||.+-+.+|+.+++....-. .+-..+.. ..++++.. ...+..+.
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl---e~~q~~~~~g~~n~~nse----------t~~~~~~~ 569 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL---ELTQELRQAGMLNDPNSE----------TAPEQNYN 569 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHH---HHHHHHHhcccccCcccc----------cccccccc
Confidence 4677899999999988 556788888889988887321110 00011111 12333322 00000000
Q ss_pred ---HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC
Q 006898 353 ---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (626)
Q Consensus 353 ---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 429 (626)
......+-.....++.|+.+.||++.++.+..++..+|.+.-.+.+++++..+++|++|+.|.+..+.+..++-..|
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence 01122234456778899999999999999999999999998888899999999999999999999999998888888
Q ss_pred hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh-HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh
Q 006898 430 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (626)
Q Consensus 430 ~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~ 508 (626)
.....+.++|.+.+.+.|.++.|-..|..++..+++..-- ....-+++..+..++-+||..+|.+++..+..+.+.++.
T Consensus 650 ~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 650 WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 8888899999999999999999999999999999985321 123455677777788999999999999999999988876
Q ss_pred HHhhhcHHH
Q 006898 509 EITCSRLLP 517 (626)
Q Consensus 509 ~~~~~~~l~ 517 (626)
....-.++|
T Consensus 730 advyc~l~P 738 (1431)
T KOG1240|consen 730 ADVYCKLMP 738 (1431)
T ss_pred hhheEEeeh
Confidence 544333333
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.8e-13 Score=133.75 Aligned_cols=336 Identities=14% Similarity=0.127 Sum_probs=240.4
Q ss_pred hhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCC---Cccccch
Q 006898 210 LTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGP---EPTRMDL 281 (626)
Q Consensus 210 l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l 281 (626)
.+..++...+..+...+..+...-.. +.+...++|.+..++ .+.++.++..++.+|..++..-.. .......
T Consensus 74 ~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~aga 153 (514)
T KOG0166|consen 74 ALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGA 153 (514)
T ss_pred HHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCc
Confidence 33333344444444444444332221 223445677776666 466788888888888888864321 1234568
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh---HHHHHhhHHHHHHhccCCCH-HHHHHHHHHHHhhhhhhcH---HH
Q 006898 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGK---DA 354 (626)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~-~vr~~~~~~l~~l~~~~~~---~~ 354 (626)
+|.|..++.+++.+|++.|+.+|+.++..-.. ..+...+++.+..++...+. ...+.+..++..++..-.+ -.
T Consensus 154 vp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~ 233 (514)
T KOG0166|consen 154 VPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFD 233 (514)
T ss_pred hHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHH
Confidence 89999999999999999999999988753221 12233445555555554443 6777788899999876521 13
Q ss_pred HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhh---HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh
Q 006898 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (626)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~---~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 431 (626)
....++|.+..++.+.|++|..-|+.+++++...-.... +...+.|.+.+++.+.+..++..++++++.++.+-+..
T Consensus 234 ~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~Q 313 (514)
T KOG0166|consen 234 VVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQ 313 (514)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHH
Confidence 456789999999999999999999999999875432211 22457899999999999999999999999987654422
Q ss_pred ---hHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898 432 ---FFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (626)
Q Consensus 432 ---~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~ 504 (626)
......+|.+..++. .+...+|..|+++++.++..-... .+...++|.|..++...++++|..|+++++++..
T Consensus 314 Tq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 314 TQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 234567888989887 566669999999999998732111 2346789999999999999999999999999987
Q ss_pred ccChHH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh
Q 006898 505 VMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (626)
Q Consensus 505 ~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 545 (626)
...++. +...+++.+..++.-++..+-..+..++..|....
T Consensus 394 ~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 394 SGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred cCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 666542 23457888888888788888888888888877654
No 36
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=6.8e-13 Score=120.88 Aligned_cols=376 Identities=17% Similarity=0.133 Sum_probs=256.7
Q ss_pred ccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhc--
Q 006898 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV-- 86 (626)
Q Consensus 9 ~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~-- 86 (626)
.|+..+.---.|++.....+|.-+...+....--+..++..-|.+..+.+.++.+..++...+|+++-..+.....-.
T Consensus 47 ~plraltvL~ySDnlnlqrsaalafAeitek~vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~ 126 (550)
T KOG4224|consen 47 SPLRALTVLKYSDNLNLQRSAALAFAEITEKGVRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLL 126 (550)
T ss_pred CccchheeeeeccccccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEecc
Confidence 344443333335666655566656666543322223345556777667788999999999999999876554433333
Q ss_pred -chHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhh-H--HHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHH
Q 006898 87 -LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-L--VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT 162 (626)
Q Consensus 87 -l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~-~--~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~ 162 (626)
+-+++..+.+|... +|-.|+.|+-.++..-..+. + .+-+.|++. +.+.++..+|..+...+..+... .+.+.
T Consensus 127 Gl~~Li~qmmtd~ve-vqcnaVgCitnLaT~d~nk~kiA~sGaL~pltr-LakskdirvqrnatgaLlnmThs--~EnRr 202 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVE-VQCNAVGCITNLATFDSNKVKIARSGALEPLTR-LAKSKDIRVQRNATGALLNMTHS--RENRR 202 (550)
T ss_pred ChHHHHHHhcCCCcE-EEeeehhhhhhhhccccchhhhhhccchhhhHh-hcccchhhHHHHHHHHHHHhhhh--hhhhh
Confidence 33466777665544 78889999988887633221 1 122555554 88888888888888877766432 12222
Q ss_pred H-----HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhccc
Q 006898 163 E-----LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (626)
Q Consensus 163 ~-----l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (626)
. -+|.+..++...++.||..++.+++.++-..... ...+.++|.+..++.|+++.++..|.-+|..++...
T Consensus 203 ~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 203 VLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred hhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 2 3578889999999999999999999987543321 223569999999999999999999999999887654
Q ss_pred Cc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCh-HHHHHHHHHhHHHHH
Q 006898 234 EP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFC 308 (626)
Q Consensus 234 ~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~ 308 (626)
.- +.....-+|.+.++++|+.-..-...+.|+..++-+-+.+.. ...++..+..++.-.+ .+++-+|...|-.++
T Consensus 283 ~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA 362 (550)
T KOG4224|consen 283 EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA 362 (550)
T ss_pred hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence 32 334555788999999988776666666777777665544321 2234455666665433 568889998888877
Q ss_pred HhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh--hcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhH
Q 006898 309 RILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL--LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (626)
Q Consensus 309 ~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~ 383 (626)
...... .+-...+|.+.+++-|....+|..+..++..++-. ........-++|++..++.+...+||..++.+|.
T Consensus 363 asse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~ 442 (550)
T KOG4224|consen 363 ASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALI 442 (550)
T ss_pred hhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHH
Confidence 633221 33345689999999999888888877777766532 2222334458899999999999999999999999
Q ss_pred HHHhh
Q 006898 384 QVNQV 388 (626)
Q Consensus 384 ~~~~~ 388 (626)
+++..
T Consensus 443 Nlss~ 447 (550)
T KOG4224|consen 443 NLSSD 447 (550)
T ss_pred hhhhh
Confidence 98754
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.5e-12 Score=125.85 Aligned_cols=377 Identities=15% Similarity=0.167 Sum_probs=268.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhhcccCch---h
Q 006898 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ---D 237 (626)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~---~ 237 (626)
+.....+...+...+..+...+..+......+ .....++|.+...+. +..+.++..|.-+|.+++.+.... .
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 34444444445555666677776666544332 233457888888875 667899999999999999876552 2
Q ss_pred hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCChH-HHHHHHHHhHHHHHHhhCh
Q 006898 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRILNP 313 (626)
Q Consensus 238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~ 313 (626)
.....+|.+..++.+++..||..++.+||.++..... -......++.++.++....+ ...+.+..+|..++..-.+
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 4566889999999999999999999999988743211 01123466667777766554 6777888999999885532
Q ss_pred H---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898 314 E---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (626)
Q Consensus 314 ~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~ 387 (626)
. .....++|.+..++.+.+..|..-++.++..+...-.+. ......+|.+..+|...+..|+..|+++++++..
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 1 345788999999999999999999999999887543321 1233578999999999999999999999999654
Q ss_pred hhchh---hHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006898 388 VIGID---LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNL 460 (626)
Q Consensus 388 ~~~~~---~~~~~i~~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l 460 (626)
..+.. .+....+|.+..++. ++...+|..++-.++.+..+... ..+...++|.+..+++..+...|..|++++
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaI 388 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAI 388 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHH
Confidence 32221 123456788888887 56677999999999998864322 234567899999999999999999999999
Q ss_pred HHHHHHhChHH----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh------HHh-----hhcHHHHHhhhCCC
Q 006898 461 KRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS------EIT-----CSRLLPVVINASKD 525 (626)
Q Consensus 461 ~~l~~~~~~~~----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~------~~~-----~~~~l~~l~~~l~d 525 (626)
+.++....++. ....+++.+..++.-++.++-..++.++.++.+.-.. +.+ ....+..+..+..+
T Consensus 389 sN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~h 468 (514)
T KOG0166|consen 389 SNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSH 468 (514)
T ss_pred HhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhcc
Confidence 99987655442 2356889999999888888888888899888653221 111 11233344444555
Q ss_pred CCchHHHHHHHHHHHHH
Q 006898 526 RVPNIKFNVAKVLQSLI 542 (626)
Q Consensus 526 ~~~~vR~~a~~~l~~i~ 542 (626)
.+.++...|.+.+....
T Consensus 469 en~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 469 ENEEIYKKAYKIIDTYF 485 (514)
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 56667766666666544
No 38
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.1e-10 Score=113.83 Aligned_cols=486 Identities=16% Similarity=0.135 Sum_probs=317.2
Q ss_pred HHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccc-cccCCchHHHHHHHHHHhccccccCCcchhhcchHH
Q 006898 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS-ENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (626)
Q Consensus 12 ~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~-~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~ 90 (626)
..|.+-|.|.....+.+|++.+-.+ ...|.+ ...+.|-+. +...++.+|++-+---|-++++. +++..-.=+..
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~-iA~G~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALLSInt 112 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIAL-IAKGKD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALLSINT 112 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHH-HhcCCc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceeeeHHH
Confidence 4567778888888899998877765 333433 445555554 47788999999887777776663 23322223456
Q ss_pred HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHH
Q 006898 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (626)
Q Consensus 91 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ 170 (626)
+++-+.|+++.+|-.|.+++..|-- ..+.+.++-.+.++..|..+.||..|+..|..++..-+ +.+.++...+..
T Consensus 113 fQk~L~DpN~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~qL~e~I~~ 187 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQKDQLEEVIKK 187 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhHHHHHHHHHH
Confidence 8888999999999999998876622 23445566677888899999999999999999987554 455599999999
Q ss_pred hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHH---HhhcCCchhHHHHHHHHHHHhhcccC-------------
Q 006898 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFE---DLTQDDQDSVRLLAVEGCAALGKLLE------------- 234 (626)
Q Consensus 171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~---~l~~d~~~~vr~~a~~~l~~l~~~~~------------- 234 (626)
++.|.++.|--+|+.++..++... .+.|.+.+. +++-|-++-=+...+..|.+-+.+.-
T Consensus 188 LLaD~splVvgsAv~AF~evCPer-----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n 262 (968)
T KOG1060|consen 188 LLADRSPLVVGSAVMAFEEVCPER-----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDN 262 (968)
T ss_pred HhcCCCCcchhHHHHHHHHhchhH-----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccC
Confidence 999999999888888887765421 122223222 22333332223334444444333210
Q ss_pred ---------------c---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHH
Q 006898 235 ---------------P---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEV 296 (626)
Q Consensus 235 ---------------~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 296 (626)
+ +.....++...+.++.+.++.|-.++++.+..++.... ...+...++.++.. +.++
T Consensus 263 ~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~----~~~i~kaLvrLLrs-~~~v 337 (968)
T KOG1060|consen 263 GRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ----VTKIAKALVRLLRS-NREV 337 (968)
T ss_pred cccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH----HHHHHHHHHHHHhc-CCcc
Confidence 0 11233456666777888888888888888887775431 34566777777765 3578
Q ss_pred HHHHHHhHHHHHHhhChHHHHHhhHHHHHHhc-cCCCH-HHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHH
Q 006898 297 RIAAAGKVTKFCRILNPELAIQHILPCVKELS-SDSSQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV 374 (626)
Q Consensus 297 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 374 (626)
+...+.++..++... ..-+.|+++.+. -..++ .++.-=++.+..++.. .....+++-+....++.+..+
T Consensus 338 qyvvL~nIa~~s~~~-----~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~e----sni~~ILrE~q~YI~s~d~~f 408 (968)
T KOG1060|consen 338 QYVVLQNIATISIKR-----PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANE----SNISEILRELQTYIKSSDRSF 408 (968)
T ss_pred hhhhHHHHHHHHhcc-----hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHHhcCchhH
Confidence 888888888877632 123457777643 22232 4444444555555532 234567888888888888889
Q ss_pred HHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC-CchHHH
Q 006898 375 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIR 453 (626)
Q Consensus 375 r~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d-~~~~VR 453 (626)
-..++.++|.++...+.- .+..+.-|..++.+.+..+-..++..+..+.+.-..+. ..++..+.++++. ..+.-|
T Consensus 409 aa~aV~AiGrCA~~~~sv--~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h--~~ii~~La~lldti~vp~AR 484 (968)
T KOG1060|consen 409 AAAAVKAIGRCASRIGSV--TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH--LEILFQLARLLDTILVPAAR 484 (968)
T ss_pred HHHHHHHHHHHHHhhCch--hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH--HHHHHHHHHHhhhhhhhhhh
Confidence 999999999998876542 25677888888888888888888888888876544432 1244444444422 245567
Q ss_pred HHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhC-CCCCchHHH
Q 006898 454 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKF 532 (626)
Q Consensus 454 ~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l-~d~~~~vR~ 532 (626)
....|.+|..+..... ....++-.+.+-+.+....+|..++.....+.-.-..+ ...+..+...+. .|.+-++|.
T Consensus 485 A~IiWLige~~e~vpr--i~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~--~kll~~Yv~~L~~yD~sYDiRD 560 (968)
T KOG1060|consen 485 AGIIWLIGEYCEIVPR--IAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ--TKLLVQYVFELARYDLSYDIRD 560 (968)
T ss_pred ceeeeeehhhhhhcch--hchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh--HHHHHHHHHHHhccCCCcchhH
Confidence 7777888888876432 23455666666788889999988887777664322222 233444444443 366666665
Q ss_pred HH
Q 006898 533 NV 534 (626)
Q Consensus 533 ~a 534 (626)
.+
T Consensus 561 Ra 562 (968)
T KOG1060|consen 561 RA 562 (968)
T ss_pred HH
Confidence 54
No 39
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.4e-09 Score=113.32 Aligned_cols=458 Identities=16% Similarity=0.117 Sum_probs=280.9
Q ss_pred hhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcC-CccchhHHHhhHhHHhcCC--CChHH
Q 006898 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPS--APDIL 160 (626)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~--~~~~~ 160 (626)
.+.++.-+...++|.+..||+.|++.++.+...+|++- ..+++..+..+.+- +.+..=..+|.++++++.. ..+..
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 34555666667788999999999999999999999643 33444444333322 2233445888899888654 23456
Q ss_pred HHHHHHHHHHhcCC--------CCHHHHHHHHHhHHHHHHhhCccchh---hhHHH-HHHHhhcCCchhHHHHHHHHHHH
Q 006898 161 KTELRSIYTQLCQD--------DMPMVRRSAASNLGKFAATVEPAHLK---TDIMS-IFEDLTQDDQDSVRLLAVEGCAA 228 (626)
Q Consensus 161 ~~~l~~~l~~l~~d--------~~~~vR~~a~~~l~~l~~~~~~~~~~---~~ll~-~l~~l~~d~~~~vr~~a~~~l~~ 228 (626)
..+++|.+.+.+.- ....||.+|+..+..+++...+.... +.+.+ .+...+.|.+-.+|.+|..++..
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 67888888877642 24579999999999999988775433 33333 34455788999999988877765
Q ss_pred hhcccCc-----h-------------------------hhhhhhHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHhCC
Q 006898 229 LGKLLEP-----Q-------------------------DCVAHILPVIVNF----SQDKSWRVRYMVANQLYELCEAVGP 274 (626)
Q Consensus 229 l~~~~~~-----~-------------------------~~~~~i~~~l~~~----~~d~~~~vR~~a~~~l~~l~~~~~~ 274 (626)
..-..+. + .+..+.-|.+..+ +.+.+..+|..++.+|..+....++
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk 577 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPK 577 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHH
Confidence 4332211 0 1122233344333 3456778999999999998876654
Q ss_pred CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHH-----HHH-------hhHHHHHHhccCC--CHHHHHHHH
Q 006898 275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-----AIQ-------HILPCVKELSSDS--SQHVRSALA 340 (626)
Q Consensus 275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~~-------~l~~~l~~l~~d~--~~~vr~~~~ 340 (626)
.. ....+|.++......+...|.++..+.+.+......-. ..+ .++|.+....-.. ..-.|.+.+
T Consensus 578 ~~-a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~ 656 (1133)
T KOG1943|consen 578 YL-ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATL 656 (1133)
T ss_pred hh-cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHH
Confidence 43 34555556666666778899988888877765332111 001 1122221111111 145566666
Q ss_pred HHHHhhhhhh---cHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh--chhhHHhhHHHHHHHHhcC-CChHHH
Q 006898 341 SVIMGMAPLL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVELAED-RHWRVR 414 (626)
Q Consensus 341 ~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~--~~~~~~~~i~~~l~~~~~~-~~~~~r 414 (626)
+.+..+...- ..+.+.+.....+.+.+.+++ .+|.++..+++.++..+ +.+.....++......+.+ .+.++|
T Consensus 657 ~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r 735 (1133)
T KOG1943|consen 657 KFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIR 735 (1133)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHH
Confidence 6666654322 224445555556666666665 89999999999987654 2222222344444444444 467888
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhhc----C
Q 006898 415 LAIIEYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMIN----N 486 (626)
Q Consensus 415 ~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~----~ 486 (626)
....-+++.+-...-.....+.+...++... .|..+.-|+..+.++..++...+.. ...+++...+.+.+. |
T Consensus 736 ~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd 815 (1133)
T KOG1943|consen 736 RGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTD 815 (1133)
T ss_pred HHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccc
Confidence 8776666655432222222333444444433 4447788999999999999887722 223445555555443 3
Q ss_pred C----ChHHHHHHHHHHHHhccccC-hHH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898 487 P----HYLYRMTILRAISLLAPVMG-SEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 487 ~----~~~vR~~a~~~l~~i~~~~~-~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 544 (626)
. ...||.+|..++..+...+. ++. ....++-.+.+-.-++.+..|..|+.++..+...
T Consensus 816 ~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 816 SRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred cCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 2 35699999999998876554 332 2333444444445567777899999999887765
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.44 E-value=6.7e-10 Score=114.38 Aligned_cols=364 Identities=17% Similarity=0.161 Sum_probs=247.0
Q ss_pred HHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHH
Q 006898 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVP 283 (626)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~ 283 (626)
+...+++.+.+.-..++..|..+.+........+.+.+.+...+.++++.||..+++.++.++..-.. ......+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 55556666666667788888888887777666788889999999999999999999998887653211 112457999
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH---HHHh
Q 006898 284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQ 358 (626)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~ 358 (626)
.+...+.|++.+|...|+.+|..+++.-... .+.....+.+..+...++..+|.-+++.+..++..-..-. ....
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg 202 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG 202 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 9999999999999999999999998742211 1123336778888877788889888888888865432211 1224
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh-chhhH-HhhHHHHHHHHhcCC--Ch---HHH-HHHHHHHHHHHHhhCh
Q 006898 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLL-SQSLLPAIVELAEDR--HW---RVR-LAIIEYIPLLASQLGV 430 (626)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~~~~-~~~i~~~l~~~~~~~--~~---~~r-~~~~~~l~~l~~~~~~ 430 (626)
+++.++..++++|.-++.++++.+..++..- |.+++ ...+++.+.+.+.+. ++ .+. -..+.+++.++.. .+
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~ 281 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SP 281 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-Ch
Confidence 8889999999999999999999999998632 22332 245777787776432 22 222 2233566666664 33
Q ss_pred hhHH---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh-HHH-------hhhhHHHHHhhhcCCChHHHHHHHHHH
Q 006898 431 GFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWA-------MQHITPQVLEMINNPHYLYRMTILRAI 499 (626)
Q Consensus 431 ~~~~---~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-~~~-------~~~il~~l~~~l~~~~~~vR~~a~~~l 499 (626)
..+. +.++..++..+.+.+...+..|..++|.++..... ... ...++..+..........+|..++.++
T Consensus 282 ~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al 361 (503)
T PF10508_consen 282 QEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHAL 361 (503)
T ss_pred HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 3222 45667777888899999999999999999865322 211 123444444455666778999999999
Q ss_pred HHhccccCh---HHh---h--------hcHHH-HHhhhCCCCCchHHHHHHHHHHHHHhhhccc---hhhhcccchHHhh
Q 006898 500 SLLAPVMGS---EIT---C--------SRLLP-VVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VSTFSVSPFSFML 561 (626)
Q Consensus 500 ~~i~~~~~~---~~~---~--------~~~l~-~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~ 561 (626)
+.+...... +.. . +.-.. .+..+++.|-+++|.++...|..++.+-... ...+.++..+. .
T Consensus 362 ~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~ll-d 440 (503)
T PF10508_consen 362 ASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLL-D 440 (503)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhc-C
Confidence 999643332 111 1 11112 7788889999999999999999987664221 11223343333 3
Q ss_pred hccCCCccccc
Q 006898 562 YLNVNNFNVGF 572 (626)
Q Consensus 562 l~~d~d~~vr~ 572 (626)
-..+++++.++
T Consensus 441 r~~E~~K~~ke 451 (503)
T PF10508_consen 441 RSTETTKEGKE 451 (503)
T ss_pred CCCCCCHHHHH
Confidence 34455666665
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.43 E-value=1.5e-09 Score=111.87 Aligned_cols=298 Identities=16% Similarity=0.190 Sum_probs=200.7
Q ss_pred HHHHhcCCccchhHHHhhHhHHhcCCCCh-HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--c-chhhhHHH
Q 006898 130 VKRLAAGEWFTARVSACGLFHIAYPSAPD-ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--A-HLKTDIMS 205 (626)
Q Consensus 130 l~~l~~~~~~~~r~~a~~~l~~~~~~~~~-~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~ll~ 205 (626)
+...+++.+...-..++.++..+...... ...+++.+.+...+.++++.||..++..+++++..-.. + .....+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 44444444333344677777777666554 35788999999999999999999999999988764322 1 12356889
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHhhcccCc-h-hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccc
Q 006898 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEP-Q-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMD 280 (626)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ 280 (626)
.+..++.|++..|...|+.++..+++.-.. + .+.+...+.+..++...+..+|..+.+.+..++...... .....
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg 202 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG 202 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 999999999999999999999999876433 1 123344778888887778888888888888876542211 11235
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh-HH-HHHhhHHHHHHhccCCC--HHHH----HHHHHHHHhhhhhhcH
Q 006898 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-EL-AIQHILPCVKELSSDSS--QHVR----SALASVIMGMAPLLGK 352 (626)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~-~~~~l~~~l~~l~~d~~--~~vr----~~~~~~l~~l~~~~~~ 352 (626)
+++.++..++++|.-+|..+++.+..+++.-.. +. ....+++.+..++.+.. ++.+ -..+..++.++...+.
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~ 282 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ 282 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH
Confidence 888889989998899999999999999883221 11 22345666665544321 2111 2333555566554222
Q ss_pred HH--HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh-chhhH-------HhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 006898 353 DA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLL-------SQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (626)
Q Consensus 353 ~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~~~~-------~~~i~~~l~~~~~~~~~~~r~~~~~~l~ 422 (626)
.. ..+.++..+..++...++..+..|+.+++.++... |...+ .+.++..+.....+....+|..+++++.
T Consensus 283 ~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~ 362 (503)
T PF10508_consen 283 EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALA 362 (503)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 21 23456777778888999999999999999987543 22222 1233444444455666778888888888
Q ss_pred HHHHh
Q 006898 423 LLASQ 427 (626)
Q Consensus 423 ~l~~~ 427 (626)
.+...
T Consensus 363 ~il~~ 367 (503)
T PF10508_consen 363 SILTS 367 (503)
T ss_pred HHHhc
Confidence 88653
No 42
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.2e-08 Score=102.60 Aligned_cols=422 Identities=18% Similarity=0.137 Sum_probs=252.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhccc-Cchh
Q 006898 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLL-EPQD 237 (626)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~-~~~~ 237 (626)
..+.++..++..++|.+..||..+++.++.+....+.+ ..++.+.....+.+-- ++..=..++-+++.++... -...
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 55678888889999999999999999999999998853 3333444333332221 2333346777777766431 1122
Q ss_pred hhhhhHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHhCCCcccc---chHHHH-HHhcCCChHHHHHHHHHhHH
Q 006898 238 CVAHILPVIVNFSQ--------DKSWRVRYMVANQLYELCEAVGPEPTRM---DLVPAY-VRLLRDNEAEVRIAAAGKVT 305 (626)
Q Consensus 238 ~~~~i~~~l~~~~~--------d~~~~vR~~a~~~l~~l~~~~~~~~~~~---~l~~~l-~~~l~d~~~~vr~~a~~~l~ 305 (626)
....++|.+.+.+. .....||.+++..+-.+++......... .+.+.+ ...+-|.+-.+|.+|..++.
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 35567777765442 2346799999999999998776443222 222222 34556999999999998887
Q ss_pred HHHHhhCh-----H-------------------------HHHHhhHHHHHHhcc----CCCHHHHHHHHHHHHhhhhhhc
Q 006898 306 KFCRILNP-----E-------------------------LAIQHILPCVKELSS----DSSQHVRSALASVIMGMAPLLG 351 (626)
Q Consensus 306 ~l~~~~~~-----~-------------------------~~~~~l~~~l~~l~~----d~~~~vr~~~~~~l~~l~~~~~ 351 (626)
......|. + .+....-|.+..+.. +-+..+|..++.++..++..-+
T Consensus 497 E~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p 576 (1133)
T KOG1943|consen 497 ENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEP 576 (1133)
T ss_pred HHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH
Confidence 65443220 0 111122334444443 3455789999999999776544
Q ss_pred HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhh-----HHh-------hHHHHHHHHhcCC--ChHHHHHH
Q 006898 352 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-----LSQ-------SLLPAIVELAEDR--HWRVRLAI 417 (626)
Q Consensus 352 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~-----~~~-------~i~~~l~~~~~~~--~~~~r~~~ 417 (626)
+ ...+..+|.++......+...|.+...+.+++....-.-. +.+ .++|.+....... ..-+|.+.
T Consensus 577 k-~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~ 655 (1133)
T KOG1943|consen 577 K-YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQAT 655 (1133)
T ss_pred H-hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHH
Confidence 3 3344556666666666778888888888777654321100 111 1223322221111 13456666
Q ss_pred HHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhC--hHHHhhhhHHHHHhhhc-CCChHH
Q 006898 418 IEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMIN-NPHYLY 491 (626)
Q Consensus 418 ~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~--~~~~~~~il~~l~~~l~-~~~~~v 491 (626)
...+..+...-. .+++.+....++.+.+.+++ .+|.++.++++.++..+- ++.....++...+..+. ..+..+
T Consensus 656 ~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~ 734 (1133)
T KOG1943|consen 656 LKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERI 734 (1133)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHH
Confidence 666665543211 23344445555666666666 899999999999998652 22112234444444444 447889
Q ss_pred HHHHHHHHHHhccccChHHhhhcHHHHHhhh-CCCCCchHHHHHHHHHHHHHhhhcc-------chhhhcccchHHhhhc
Q 006898 492 RMTILRAISLLAPVMGSEITCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQ-------SVSTFSVSPFSFMLYL 563 (626)
Q Consensus 492 R~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~-l~d~~~~vR~~a~~~l~~i~~~~~~-------~~~~~~i~~~l~~~l~ 563 (626)
|....-+++.+....=.-...+.+...++.. -.|..+.-|.....++..+....+. ..+.+.++.+|. ...
T Consensus 735 r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~ld-dYt 813 (1133)
T KOG1943|consen 735 RRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALD-DYT 813 (1133)
T ss_pred HHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh-hcc
Confidence 9998888887653211111233343333333 3455778899999999998877762 255567777777 777
Q ss_pred cCCCccccc-ccccCchhHHHHHHHHHHH
Q 006898 564 NVNNFNVGF-IFAAFPLVLFSCLALNYCH 591 (626)
Q Consensus 564 ~d~d~~vr~-~~~~~~~~~~a~~al~~~~ 591 (626)
.|...+|-. |.+ .|..|+..+-
T Consensus 814 td~rGDVGswVRe------aAm~al~~~~ 836 (1133)
T KOG1943|consen 814 TDSRGDVGSWVRE------AAMKALSSLL 836 (1133)
T ss_pred cccCccHHHHHHH------HHHHHHHhhh
Confidence 777777644 222 6666666553
No 43
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.4e-11 Score=111.00 Aligned_cols=382 Identities=14% Similarity=0.129 Sum_probs=267.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhh---hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh--
Q 006898 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKT---DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-- 237 (626)
Q Consensus 163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~---~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-- 237 (626)
+....++.++++.++.++.++..++|+++-..+.....- .+-+.+.+++.|. .+||..+++++.+++..-....
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhh
Confidence 344455567788899999999999999998877754332 2445667777766 4677888888888887633211
Q ss_pred hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH-
Q 006898 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE- 314 (626)
Q Consensus 238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~- 314 (626)
-....+..+.++.+.++-+||..+..++..+...... ......-+|++..+++..++++|..|..+++.++-.-...
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 1122344455588888899999999888877654322 2233456899999999999999999999998876422111
Q ss_pred HH---HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh--cHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh
Q 006898 315 LA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (626)
Q Consensus 315 ~~---~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~ 389 (626)
.+ -+.++|.+..+..|++++++..+.-+++.++..- ..+....--+|.+..++.++.-..-.+.+.++..+.-+-
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 11 1358899999999999999999999999987532 122223345789999998876555555556665554433
Q ss_pred chhhH--HhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006898 390 GIDLL--SQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (626)
Q Consensus 390 ~~~~~--~~~i~~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l 463 (626)
+.+.+ ....+..+.+++.- ++...+..+...+-.++.... ...+...-+|.+..++.|..-.||..-..|+..+
T Consensus 324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 33221 12344556666654 456688888888887775332 2233455688899999999999999888888887
Q ss_pred HHHh--ChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH--------hhhcHHHHHhhhCCCCCchHHHH
Q 006898 464 AEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--------TCSRLLPVVINASKDRVPNIKFN 533 (626)
Q Consensus 464 ~~~~--~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~--------~~~~~l~~l~~~l~d~~~~vR~~ 533 (626)
.-.- ........++|.++.+..+.+..+|-+++.++.++......-. -.+.+-..|..++......+|..
T Consensus 404 al~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hi 483 (550)
T KOG4224|consen 404 ALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHI 483 (550)
T ss_pred HhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHH
Confidence 6432 2223446789999999999999999999999999976432210 01345567777788888889999
Q ss_pred HHHHHHHHHhhh
Q 006898 534 VAKVLQSLIPIV 545 (626)
Q Consensus 534 a~~~l~~i~~~~ 545 (626)
+.+++-.+.+..
T Consensus 484 a~wTI~qLle~h 495 (550)
T KOG4224|consen 484 ARWTIQQLLEDH 495 (550)
T ss_pred HHHHHHHHHHhC
Confidence 999998887654
No 44
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.42 E-value=2.2e-09 Score=104.06 Aligned_cols=463 Identities=12% Similarity=0.073 Sum_probs=277.4
Q ss_pred HHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCch-HHHHHHHHHHhccccccCCcchhhcchHHHh
Q 006898 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD-EVLLAMAEELGVFIPYVGGVEHAHVLLPPLE 92 (626)
Q Consensus 14 l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~-~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~ 92 (626)
+...+++.|..+|.....++.++... ..+.. --.--.+++.+...+ .+|-.|.+.|..++.. .....+-.++.
T Consensus 70 i~KlFQhkd~~Lrq~VY~aIkelS~~-tedvl-m~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~----~tv~~~er~l~ 143 (898)
T COG5240 70 ILKLFQHKDLYLRQCVYSAIKELSKL-TEDVL-MGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDG----ETVYDFERYLN 143 (898)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhhc-chhhh-HHHHHHHHhhccCCccccccHHHHHHHHhcCc----chhhhHHHHhh
Confidence 44567899999999988888887432 21110 000122233333333 5777777777766552 12233444566
Q ss_pred hhhcCcchHHHHHHHHHHHHHHhhcChh-hH----HHhHHHHHHHHhcCC------------ccchhHHHhhHhHHhcCC
Q 006898 93 TLCTVEETCVRDKAVESLCRIGSQMRES-DL----VDWYIPLVKRLAAGE------------WFTARVSACGLFHIAYPS 155 (626)
Q Consensus 93 ~l~~~~~~~vR~~a~~~l~~i~~~~~~~-~~----~~~l~~~l~~l~~~~------------~~~~r~~a~~~l~~~~~~ 155 (626)
....++.+.+|.+|.-. -...++.. .. .......+..+.+.+ ++-..+.|..++...-.+
T Consensus 144 ~a~Vs~~~a~~saalv~---aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~ 220 (898)
T COG5240 144 QAFVSTSMARRSAALVV---AYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRT 220 (898)
T ss_pred hhccccchhhhhhHHHH---hhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcc
Confidence 66677888777765422 12222211 00 111111122222111 122334444444433222
Q ss_pred CChHHHHHHHHHHHHhcCCCCHHHHHHHH--HhHHHHHHhh-CccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcc
Q 006898 156 APDILKTELRSIYTQLCQDDMPMVRRSAA--SNLGKFAATV-EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (626)
Q Consensus 156 ~~~~~~~~l~~~l~~l~~d~~~~vR~~a~--~~l~~l~~~~-~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (626)
- +.....++..+.. .. .++.+.+ ..+....+.+ .+..+...+.|.+...++|.-+.|...+.+++.+++..
T Consensus 221 d-kma~lklv~hf~~---n~--smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~ 294 (898)
T COG5240 221 D-KMAQLKLVEHFRG---NA--SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEE 294 (898)
T ss_pred c-HHHHHHHHHHhhc---cc--ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHh
Confidence 1 1111122222221 11 2222211 1112222222 22455667889999999998889998899988888766
Q ss_pred cCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC
Q 006898 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (626)
Q Consensus 233 ~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 312 (626)
.-..++....+..+..++..+....|-+|...+..++...+... ...-+-+..++.|.+..+...|+.+|-+- |
T Consensus 295 nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN~evEsLIsd~Nr~IstyAITtLLKT----G 368 (898)
T COG5240 295 NVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCNKEVESLISDENRTISTYAITTLLKT----G 368 (898)
T ss_pred ccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecChhHHHHhhcccccchHHHHHHHHHc----C
Confidence 53445677788888999999999999999999999998876543 23345566788888877766666655443 3
Q ss_pred hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC-CCHHHHHHHHHhhHHHHhhhch
Q 006898 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI 391 (626)
Q Consensus 313 ~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~L~~~~~~~~~ 391 (626)
.+.-...++..+..+..|-+...+..++.++..++-.|+.+ ...++..+.+.|.+ ...+.+..++.++..+++..+.
T Consensus 369 t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k--~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~ 446 (898)
T COG5240 369 TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK--KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD 446 (898)
T ss_pred chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH--HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch
Confidence 34444666777777777777777888888888888877754 23455666665554 4578888999999988877654
Q ss_pred hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH
Q 006898 392 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (626)
Q Consensus 392 ~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~ 471 (626)
.. +.++..+..+++|-.+ ...+++.++.+++.-+...-....+-.+...+-=.+.-||.+|+.+|.++.-...+..
T Consensus 447 sk--EraLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~ 522 (898)
T COG5240 447 SK--ERALEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV 522 (898)
T ss_pred HH--HHHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc
Confidence 33 5677777777777543 2334445555554322111111122222222222467799999999999887666655
Q ss_pred HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 006898 472 AMQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (626)
Q Consensus 472 ~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~ 503 (626)
..+.+...+..+++|.+..+|..|..++..+-
T Consensus 523 ~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 523 SPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 66777778888999999999999988888764
No 45
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.2e-09 Score=109.74 Aligned_cols=164 Identities=15% Similarity=0.219 Sum_probs=76.1
Q ss_pred HHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHH
Q 006898 325 KELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 404 (626)
Q Consensus 325 ~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~ 404 (626)
..++.+.++.|-.++++++..++... -...+...++.+|... ..++...+.++..+..... ....|.+..
T Consensus 293 kpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~-----~lF~P~lKs 362 (968)
T KOG1060|consen 293 KPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRP-----TLFEPHLKS 362 (968)
T ss_pred cHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcch-----hhhhhhhhc
Confidence 33445555566666666655555322 2233444555544432 4555555555555443211 112233333
Q ss_pred Hh--cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHh
Q 006898 405 LA--EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 482 (626)
Q Consensus 405 ~~--~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~ 482 (626)
+. ..+...+...=++.+..++..-.. ..+++-+..+..+.+..+-..|++++|..+...+. .....+..|..
T Consensus 363 Ffv~ssDp~~vk~lKleiLs~La~esni----~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~ 436 (968)
T KOG1060|consen 363 FFVRSSDPTQVKILKLEILSNLANESNI----SEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQ 436 (968)
T ss_pred eEeecCCHHHHHHHHHHHHHHHhhhccH----HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHH
Confidence 21 111223333333444444332221 22344444555555555555566666666555442 23445555555
Q ss_pred hhcCCChHHHHHHHHHHHHhcc
Q 006898 483 MINNPHYLYRMTILRAISLLAP 504 (626)
Q Consensus 483 ~l~~~~~~vR~~a~~~l~~i~~ 504 (626)
++...+..|-..++..+..+.+
T Consensus 437 Llsshde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 437 LLSSHDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HHhcccchhHHHHHHHHHHHHh
Confidence 5555565565555555555554
No 46
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.7e-09 Score=109.27 Aligned_cols=421 Identities=14% Similarity=0.100 Sum_probs=248.6
Q ss_pred HHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHh
Q 006898 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL 210 (626)
Q Consensus 131 ~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l 210 (626)
..-..|+++..|..|.+..+.+-- +.....+...+..+++|.++.||+.++-+...+-..-+.......+++.+..+
T Consensus 92 ~kD~~d~np~iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~l 168 (734)
T KOG1061|consen 92 LKDCEDPNPLIRALALRTMGCLRV---DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDL 168 (734)
T ss_pred hccCCCCCHHHHHHHhhceeeEee---hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHH
Confidence 333344444445444444333211 23445566677788888889999988888887766544444455688888888
Q ss_pred hcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhc
Q 006898 211 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLL 289 (626)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l 289 (626)
+.|+++.|-..|+.++..+.+.-+........-+.+..++..-+..+--.-+..+..++...+++. -..++...+...+
T Consensus 169 l~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~L 248 (734)
T KOG1061|consen 169 LSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRL 248 (734)
T ss_pred hcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhh
Confidence 889999999999999888877655322222222222222221111111122334455555555443 1224555556666
Q ss_pred CCChHHHHHHHHHhHHHHHHhhCh--HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhh
Q 006898 290 RDNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 367 (626)
Q Consensus 290 ~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 367 (626)
...++.|...+.+.+-........ +.+.+.+-|.+..++.... .+...+++.+..+....+. .+..+ ...++--.
T Consensus 249 qh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~~~~-~~~Ff~ky 325 (734)
T KOG1061|consen 249 QHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-ILKVE-IKVFFCKY 325 (734)
T ss_pred ccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-HHHhH-hHeeeeec
Confidence 666777777777777666655443 2333445555555555444 5555555555555443332 11111 11122222
Q ss_pred cCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC
Q 006898 368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 447 (626)
Q Consensus 368 ~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d 447 (626)
+|+ -.|+..=++.+..+... +. ..++++.+.....+.+...-..++.+++.++-..... +..++.++.+++-
T Consensus 326 nDP-iYvK~eKleil~~la~~---~n-l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~ 397 (734)
T KOG1061|consen 326 NDP-IYVKLEKLEILIELAND---AN-LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLET 397 (734)
T ss_pred CCc-hhhHHHHHHHHHHHhhH---hH-HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhh
Confidence 333 23443333333333221 11 2457777777777888777778888898887655443 6688888888887
Q ss_pred CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC-CChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCC
Q 006898 448 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 526 (626)
Q Consensus 448 ~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~-~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~ 526 (626)
+..-|-+.+...+..+...+... .+.+.+.+...+.. .++..|.+.++.+|.-++.++.. ..++..+.+...|.
T Consensus 398 ~~~yvvqE~~vvi~dilRkyP~~--~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE 472 (734)
T KOG1061|consen 398 KVDYVVQEAIVVIRDILRKYPNK--YESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDE 472 (734)
T ss_pred cccceeeehhHHHHhhhhcCCCc--hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccc
Confidence 77778888888888888877654 25566666554443 57889999999999888877654 56777788888888
Q ss_pred CchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccC-CCccccc
Q 006898 527 VPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNV-NNFNVGF 572 (626)
Q Consensus 527 ~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d-~d~~vr~ 572 (626)
...|+.....+.-++..+.+. .-..-+...|. ....| .++++|.
T Consensus 473 ~~~Vql~LLta~ik~Fl~~p~-~tq~~l~~vL~-~~~~d~~~~dlrD 517 (734)
T KOG1061|consen 473 TAEVQLELLTAAIKLFLKKPT-ETQELLQGVLP-LATADTDNPDLRD 517 (734)
T ss_pred hHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHh-hhhccccChhhhh
Confidence 888988777777776655443 12222333333 33333 3457777
No 47
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.2e-07 Score=96.60 Aligned_cols=450 Identities=14% Similarity=0.106 Sum_probs=263.7
Q ss_pred hhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcc-hHHHHHHHHHHHH-HHhhcChhhHHHh
Q 006898 48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE-TCVRDKAVESLCR-IGSQMRESDLVDW 125 (626)
Q Consensus 48 ~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~vR~~a~~~l~~-i~~~~~~~~~~~~ 125 (626)
.++..+....+++|..|.+|...|.++-+..| .+..+++...+|.. .-||++|+--++. |.+.++... .+.
T Consensus 5 ~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pg------Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~-~~g 77 (1010)
T KOG1991|consen 5 SLLQIFRATIDSDAKERKAAEQQLNQLEKQPG------FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE-APG 77 (1010)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCCc------HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC-CCC
Confidence 45566667788889999999999998866432 33444555555554 3579988877765 444444321 000
Q ss_pred HHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHH
Q 006898 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS 205 (626)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~ 205 (626)
.-.+..++.+..+...++..+-....-+|-....++..+...-.+ ..|+.+++
T Consensus 78 --------------------------~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d 130 (1010)
T KOG1991|consen 78 --------------------------RPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLD 130 (1010)
T ss_pred --------------------------CcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHH
Confidence 011122333344444444433333455677666666666554333 66788999
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHhhcccC-c------------hhhhhhhHHHHHHhcCCCCHH---HHHHHHHHHHHHH
Q 006898 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLE-P------------QDCVAHILPVIVNFSQDKSWR---VRYMVANQLYELC 269 (626)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~------------~~~~~~i~~~l~~~~~d~~~~---vR~~a~~~l~~l~ 269 (626)
....++++++...-..|+-++..+.+... + +...+.++.....++.+.+.. .....++.+-.++
T Consensus 131 ~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~ 210 (1010)
T KOG1991|consen 131 KIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLI 210 (1010)
T ss_pred HHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Confidence 99999999888777888888888887654 1 112334444455566666543 3333444443333
Q ss_pred HH-hCCCcccc----chHHHHHHhcC-----------------CChHHHHHHHHHhHHHHHHhhChH------------H
Q 006898 270 EA-VGPEPTRM----DLVPAYVRLLR-----------------DNEAEVRIAAAGKVTKFCRILNPE------------L 315 (626)
Q Consensus 270 ~~-~~~~~~~~----~l~~~l~~~l~-----------------d~~~~vr~~a~~~l~~l~~~~~~~------------~ 315 (626)
.. ++...... ..+..++..++ ...+.+++.|+..|.++.+..|.. .
T Consensus 211 ~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~ 290 (1010)
T KOG1991|consen 211 YYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQM 290 (1010)
T ss_pred HHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHH
Confidence 32 22222111 23333333332 122446788999999988877632 1
Q ss_pred HHHhhHHH--------HHHhcc--CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHH--------HHhh--cC------
Q 006898 316 AIQHILPC--------VKELSS--DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF--------LSLL--KD------ 369 (626)
Q Consensus 316 ~~~~l~~~--------l~~l~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l--------~~~l--~d------ 369 (626)
+.....+. +.+..+ --+++|-.-++..+.... ........+-|++ +.++ +|
T Consensus 291 f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~V---s~~~twkll~PHl~~ii~~vIFPlmc~~d~deelw 367 (1010)
T KOG1991|consen 291 FLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCV---SHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELW 367 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhc---cHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHH
Confidence 11222221 111111 022344444444433332 2222222222222 2222 22
Q ss_pred ---CCHHHH-------------HHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc--------CCChHHHHHHHHHHHHHH
Q 006898 370 ---EFPDVR-------------LNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLA 425 (626)
Q Consensus 370 ---~~~~vr-------------~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~r~~~~~~l~~l~ 425 (626)
+..-+| .+|...+-.++..-|++.+ ..+++.+.+.++ ..+++-...|+..+++++
T Consensus 368 e~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~ 446 (1010)
T KOG1991|consen 368 EEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA 446 (1010)
T ss_pred hcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH
Confidence 223344 4677777778877777776 567777777654 346888899999999999
Q ss_pred HhhChh-h----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHhChHHHhhhhHHHHHhhhc-CCChHHHHHHHHH
Q 006898 426 SQLGVG-F----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA-EEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRA 498 (626)
Q Consensus 426 ~~~~~~-~----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~-~~~~~~~~~~~il~~l~~~l~-~~~~~vR~~a~~~ 498 (626)
..+.+. . +...+.+.++..++++..-.|..||+.++.++ ..+.......+++....+.+. |.+-.||..|+-|
T Consensus 447 ~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalA 526 (1010)
T KOG1991|consen 447 SILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALA 526 (1010)
T ss_pred HHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHH
Confidence 876432 2 33456777777889999999999999999999 455555455666777766655 8889999999999
Q ss_pred HHHhccccChH-----HhhhcHHHHHhhhCCCCCchHHHHHH
Q 006898 499 ISLLAPVMGSE-----ITCSRLLPVVINASKDRVPNIKFNVA 535 (626)
Q Consensus 499 l~~i~~~~~~~-----~~~~~~l~~l~~~l~d~~~~vR~~a~ 535 (626)
+..++...... ...+.++..|+.+.++.+.+.-.+..
T Consensus 527 Lq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vm 568 (1010)
T KOG1991|consen 527 LQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVM 568 (1010)
T ss_pred HHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHH
Confidence 99998766532 23445555666666666555544333
No 48
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.34 E-value=1.4e-10 Score=105.15 Aligned_cols=330 Identities=12% Similarity=0.083 Sum_probs=217.3
Q ss_pred hHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---hH
Q 006898 242 ILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PE 314 (626)
Q Consensus 242 i~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~ 314 (626)
++|-+..++ +.........++.++..++..-... ......+|.|++++.+.+.+||+.++.+|+.++..-. ..
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~ 194 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDY 194 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHH
Confidence 445555554 3333344557778888887643322 1234689999999999999999999999998865221 11
Q ss_pred HHHHhhHHHHHHhccCC--CHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh
Q 006898 315 LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (626)
Q Consensus 315 ~~~~~l~~~l~~l~~d~--~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~ 389 (626)
.+....+..+..++.+. +-..-+.+-..+..++..-.+ .....+.+|++.+++...+++|-.-|+.+++++...-
T Consensus 195 vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~ 274 (526)
T COG5064 195 VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP 274 (526)
T ss_pred HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence 11222333333333332 235555667778888764322 2346678999999999999999999999999986532
Q ss_pred chh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006898 390 GID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (626)
Q Consensus 390 ~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l 463 (626)
... .+...+.+.|.+++.+++..+..-+++.++.+..+-... .+.-..++.+..++..+..++|..||+++..+
T Consensus 275 ~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 275 NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI 354 (526)
T ss_pred HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence 111 112345678999999999888888999999887654322 12234677777889999999999999999988
Q ss_pred HHHhChH---HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH-H-----hhhcHHHHHhhhCCCCCchHHHHH
Q 006898 464 AEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-I-----TCSRLLPVVINASKDRVPNIKFNV 534 (626)
Q Consensus 464 ~~~~~~~---~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~-~-----~~~~~l~~l~~~l~d~~~~vR~~a 534 (626)
...-... .....++|.|..++...++.+|..||+++.+.....-.. . +.+.++..|..++.-.+-.+-..+
T Consensus 355 TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~ 434 (526)
T COG5064 355 TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA 434 (526)
T ss_pred ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh
Confidence 6432221 234678999999999999999999999999987643221 1 123345556666654444466667
Q ss_pred HHHHHHHHhhhccc------------hh--hhcccchHHhhhccCCCccccc
Q 006898 535 AKVLQSLIPIVDQS------------VS--TFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 535 ~~~l~~i~~~~~~~------------~~--~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
+.++..+......+ .+ ....+..+. .+.+..+.++-.
T Consensus 435 LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~-~~Q~s~n~~iy~ 485 (526)
T COG5064 435 LDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIH-GLQDSVNRTIYD 485 (526)
T ss_pred HHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHH-HhhhccccHHHH
Confidence 88887776543211 11 124455555 666666666555
No 49
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.31 E-value=1.5e-08 Score=98.37 Aligned_cols=470 Identities=12% Similarity=0.026 Sum_probs=265.5
Q ss_pred hcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCC----ccchhHHHhhHhHHhcCCCChHH
Q 006898 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE----WFTARVSACGLFHIAYPSAPDIL 160 (626)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~----~~~~r~~a~~~l~~~~~~~~~~~ 160 (626)
..+.--+.++.++.++..|+..-.++..+...- +.++.....+++|- ...+|-.|.+.+-.+.+. +.
T Consensus 64 t~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~t------edvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~---~t 134 (898)
T COG5240 64 TNLFFAILKLFQHKDLYLRQCVYSAIKELSKLT------EDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDG---ET 134 (898)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc------hhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCc---ch
Confidence 344445677888899999988777766654432 12233333333332 234666666655544433 33
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcC------------CchhHHHHHHHHH
Q 006898 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQD------------DQDSVRLLAVEGC 226 (626)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d------------~~~~vr~~a~~~l 226 (626)
...+-.++.+..-++++.+|.+++-.--.+...... ..|.++.-.....+.+. .++-.+-.|++.|
T Consensus 135 v~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlL 214 (898)
T COG5240 135 VYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLL 214 (898)
T ss_pred hhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHH
Confidence 333444555666677777777654332222111000 01111111111111111 1222333344444
Q ss_pred HHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-CccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 006898 227 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305 (626)
Q Consensus 227 ~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 305 (626)
..+-.+-. -..+..+..+..+.+..-..+.+..+..+...+.. .....++.|.+-..++|...-|...+++++.
T Consensus 215 yq~kr~dk-----ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~ 289 (898)
T COG5240 215 YQSKRTDK-----MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVC 289 (898)
T ss_pred HHHhcccH-----HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 33221100 00111122222221111111111111222222211 1223567888888889988899999999999
Q ss_pred HHHHhh-ChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHH
Q 006898 306 KFCRIL-NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (626)
Q Consensus 306 ~l~~~~-~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~ 384 (626)
.++... +++.+ +..+..+..+++.+....|-++++.+..++-..+... ...-+-+..+.+|.+..+...|+.+|-.
T Consensus 290 ~~~~~nv~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN~evEsLIsd~Nr~IstyAITtLLK 366 (898)
T COG5240 290 ALSEENVGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCNKEVESLISDENRTISTYAITTLLK 366 (898)
T ss_pred HHHHhccCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecChhHHHHhhcccccchHHHHHHHHH
Confidence 887754 55544 5667788888888888999999999999986554321 1233456677888888888777777654
Q ss_pred HHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHH
Q 006898 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVYSIRDAAANNLKRL 463 (626)
Q Consensus 385 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~-l~d~~~~VR~~a~~~l~~l 463 (626)
- |.+.-.+.++..+..++.|-+...+..+++++..++..++.+. ..++..+... ++....+.+..++.++..+
T Consensus 367 T----Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~ 440 (898)
T COG5240 367 T----GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGGLEFKKYMVDAISDA 440 (898)
T ss_pred c----CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3 3333334566666666666555566666777777666555432 1233333333 3345667888888888888
Q ss_pred HHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898 464 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (626)
Q Consensus 464 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 543 (626)
.+...+ .++..+..+...+.|-.+. +.+++.++-+++..+..........++...+-=.+.-||.+|..+|.++.-
T Consensus 441 ~~~~p~--skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~l 516 (898)
T COG5240 441 MENDPD--SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFAL 516 (898)
T ss_pred HhhCch--HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 876543 3566777787777775432 334444554444322211111222222222223467799999999999988
Q ss_pred hhccchhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898 544 IVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH 591 (626)
Q Consensus 544 ~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~ 591 (626)
..........+..+|+ +.++|.|.+||. .|..++..+.
T Consensus 517 n~~d~~~~~sv~~~lk-RclnD~DdeVRd---------rAsf~l~~~~ 554 (898)
T COG5240 517 NISDVVSPQSVENALK-RCLNDQDDEVRD---------RASFLLRNMR 554 (898)
T ss_pred CccccccHHHHHHHHH-HHhhcccHHHHH---------HHHHHHHhhh
Confidence 7777677788999999 999999999999 8888888775
No 50
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.27 E-value=3.4e-09 Score=104.78 Aligned_cols=248 Identities=23% Similarity=0.296 Sum_probs=152.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhh
Q 006898 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (626)
Q Consensus 163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 242 (626)
...+.+.+.+.++++.+|..++..++.+.. ...+|.+...+.|.++.+|..+..+++.+. .+..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------~~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELG--------DPEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------ChhH
Confidence 345667778888889999999988766543 457788889999999999999999877654 2345
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh------------HHHHHHHHHhHHHHHH
Q 006898 243 LPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE------------AEVRIAAAGKVTKFCR 309 (626)
Q Consensus 243 ~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~l~~ 309 (626)
++.+...+. |+++.||..++.+|+.+... ..+..++..+.|.. ..+|..++..++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 555555555 79999999999999877642 22444555565544 2456666666655543
Q ss_pred hhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh
Q 006898 310 ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (626)
Q Consensus 310 ~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~ 389 (626)
+...+.+...+.+.+..||..++..++.+.... ..+.+.+...+.|++..+|..++.+++.+..
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 333455555666666667776666666654221 2344556666666666666666666665532
Q ss_pred chhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898 390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 390 ~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
....+.+.....+.+|.++......... .+ ...-.+.+...+.|....+|..+...++.+.
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGA----LD----LAEAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhcc----cC----chhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 2344455555555555555544433331 00 0111223444455556666666665555554
No 51
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.27 E-value=2.6e-09 Score=105.63 Aligned_cols=277 Identities=23% Similarity=0.251 Sum_probs=201.8
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 006898 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL 281 (626)
Q Consensus 202 ~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 281 (626)
...+.+.+.+.|+++.+|..+...++.+. ....+|.+...+.|.++.||..++.+++.+. .+..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------~~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELG--------DPEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------ChhH
Confidence 35667778888889999999998876654 4668899999999999999999999888665 3456
Q ss_pred HHHHHHhcC-CChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCC------------HHHHHHHHHHHHhhhh
Q 006898 282 VPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS------------QHVRSALASVIMGMAP 348 (626)
Q Consensus 282 ~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~------------~~vr~~~~~~l~~l~~ 348 (626)
++.+...++ |.+..||..+..+|+.+... ..++.+...+++.. +.+|.++...++.+.
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~- 177 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG- 177 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-
Confidence 777777777 79999999999999988652 11233333334333 468888888887775
Q ss_pred hhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 006898 349 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (626)
Q Consensus 349 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 428 (626)
.+...+.+...+.|.+..||..+..+|+.+.... ..+.+.+.+...+++|.+|..++..++.+..
T Consensus 178 -------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 178 -------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred -------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 2345667788889999999999999999886542 2466788888899999999999888876532
Q ss_pred ChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh
Q 006898 429 GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (626)
Q Consensus 429 ~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~ 508 (626)
..-.+.+...+.+.+..++..+...++.. ......+.+...+.|.++.+|..+...++.+.....
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 307 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGAL--------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA- 307 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhccc--------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch-
Confidence 23445566777888888887777666511 112234556667888899999999999988765332
Q ss_pred HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898 509 EITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540 (626)
Q Consensus 509 ~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 540 (626)
.........+....+|..+......
T Consensus 308 -------~~a~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
T COG1413 308 -------VAALLLALEDGDADVRKAALILLEG 332 (335)
T ss_pred -------HHHHHHHhcCCchhhHHHHHHHHHh
Confidence 2244455667778888777666554
No 52
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.23 E-value=9.4e-07 Score=95.77 Aligned_cols=509 Identities=14% Similarity=0.105 Sum_probs=264.3
Q ss_pred HHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHH
Q 006898 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (626)
Q Consensus 12 ~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~ 90 (626)
..++-.+..+-..+|..|+++|+.+...-+.--..+.+-..+-. ..|....||.++.+.+|.++-+ .++........
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~--~~e~~~qyY~~ 896 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS--IPELIFQYYDQ 896 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc--cHHHHHHHHHH
Confidence 45667788999999999999999996642211123333333333 6788889999999999998764 34455555556
Q ss_pred HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH------HHHHH
Q 006898 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI------LKTEL 164 (626)
Q Consensus 91 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~------~~~~l 164 (626)
+.+-+.|+.-.||+-+++.+..++...|.-.....+..-+..-.+|+...+...++..+-.++..-.+. ....+
T Consensus 897 i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI 976 (1692)
T KOG1020|consen 897 IIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKI 976 (1692)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhh
Confidence 666677888999999999999999988763333344444444456666668888888887776543221 11111
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHH-hh-cCCchhHHHHHHHHHH---HhhcccCchhhh
Q 006898 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LT-QDDQDSVRLLAVEGCA---ALGKLLEPQDCV 239 (626)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~-l~-~d~~~~vr~~a~~~l~---~l~~~~~~~~~~ 239 (626)
...+ . .|+.. . ..+ ..+.+.++..+.+ .. .-....+...+..... .+..++- .
T Consensus 977 ~~~~-~-------vv~~~-~--------d~~-~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl----~ 1034 (1692)
T KOG1020|consen 977 SLEV-D-------VVMSQ-V--------DLM-NDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCL----V 1034 (1692)
T ss_pred HHHH-H-------HHHHH-H--------HHh-cChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHH----H
Confidence 1000 0 01110 0 000 1111111111111 10 0001111111111111 1110000 0
Q ss_pred hhhHHHHHHhcCCCCHHHHHHH-HHHHHHHHHHhCCCcc---ccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhC--
Q 006898 240 AHILPVIVNFSQDKSWRVRYMV-ANQLYELCEAVGPEPT---RMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILN-- 312 (626)
Q Consensus 240 ~~i~~~l~~~~~d~~~~vR~~a-~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~-- 312 (626)
..+...-.....+++..+|..+ +..|..++...+.-.+ ...+.|++..-.+. ++..+-...+..+..+...+.
T Consensus 1035 ~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~ 1114 (1692)
T KOG1020|consen 1035 EKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANP 1114 (1692)
T ss_pred HHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccc
Confidence 0111111112233344455433 3444555544332221 12344544433221 122333334444444333222
Q ss_pred hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH-HHHHhHHHHHHHhh-------cCC----CHHHHHHHHH
Q 006898 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-ATIEQLLPIFLSLL-------KDE----FPDVRLNIIS 380 (626)
Q Consensus 313 ~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l-------~d~----~~~vr~~a~~ 380 (626)
.+.+...+-..|.+++-..+...-..+..+++.++..+... .....++..+.+.+ .+. ....-...+-
T Consensus 1115 sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rsif 1194 (1692)
T KOG1020|consen 1115 SESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIF 1194 (1692)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHH
Confidence 22333444444444333333344445555566655432211 11222222222222 111 1011122333
Q ss_pred hhHHHHhhhc--------h------hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc
Q 006898 381 KLDQVNQVIG--------I------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 446 (626)
Q Consensus 381 ~L~~~~~~~~--------~------~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~ 446 (626)
++|.++..+. + +...+.++..+.-+.++.+..+|..++..++.++-....-+....+...+...+.
T Consensus 1195 tlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila 1274 (1692)
T KOG1020|consen 1195 TLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILA 1274 (1692)
T ss_pred HHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHh
Confidence 4555554321 1 1233556666666677778889999999998887665555555666666666665
Q ss_pred CCchHHH--HHHHHHHHHHHHH----h---Ch---------------------------HHHhhhhHHHHHhhhcCCChH
Q 006898 447 DKVYSIR--DAAANNLKRLAEE----F---GP---------------------------EWAMQHITPQVLEMINNPHYL 490 (626)
Q Consensus 447 d~~~~VR--~~a~~~l~~l~~~----~---~~---------------------------~~~~~~il~~l~~~l~~~~~~ 490 (626)
|.+..+. ..+...+..+... + |. .-..+.+++.+++.+-+.+.+
T Consensus 1275 ~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~ 1354 (1692)
T KOG1020|consen 1275 DDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQ 1354 (1692)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchH
Confidence 5544332 2333332222110 0 00 013466788888888899999
Q ss_pred HHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhc
Q 006898 491 YRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (626)
Q Consensus 491 vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 546 (626)
+|..|++.+.-+...- -..-....|.|..+-.|+....|..|-..|..|-+++.
T Consensus 1355 ~r~~aikvl~liL~QG--LVhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~ 1408 (1692)
T KOG1020|consen 1355 VRLVAIKVLKLILNQG--LVHPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYE 1408 (1692)
T ss_pred HHHHHHHHHHHHHHcc--CCCccchhhhheeecCChHHHHHHHHHHHHHHHHHhhH
Confidence 9999999998776521 11124688999999999999999999999999988874
No 53
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.23 E-value=4.5e-10 Score=112.38 Aligned_cols=255 Identities=14% Similarity=0.128 Sum_probs=206.0
Q ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCC
Q 006898 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 410 (626)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 410 (626)
++..-|....+.|......++++.....++|.++..+.-.+ --...+..+-.+.+.+..+.+...++|.+.++....+
T Consensus 266 ks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~D 343 (690)
T KOG1243|consen 266 KSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPD 343 (690)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcc
Confidence 45555666666666666677777777778888777664322 1112223333344445555566789999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChH
Q 006898 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL 490 (626)
Q Consensus 411 ~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~ 490 (626)
..+|...++.+......+.++...+.++|.+...+.|+++.+|+.+++++..++..++......+++..+..+-.|....
T Consensus 344 r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~ 423 (690)
T KOG1243|consen 344 RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGG 423 (690)
T ss_pred hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999998877788999999888899999
Q ss_pred HHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCccc
Q 006898 491 YRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNV 570 (626)
Q Consensus 491 vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~v 570 (626)
+|....-|++.++.++.+......+.-.+.+.++|+...-|.++...+....+.+........|+|.+. .+.-|++..|
T Consensus 424 irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~-pl~vd~e~~v 502 (690)
T KOG1243|consen 424 IRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLV-PLTVDPEKTV 502 (690)
T ss_pred ccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhcccccc-ccccCcccch
Confidence 999999999999988776643333334455578999999999999999999999988888899999999 9999999999
Q ss_pred ccccccCchhHHHHHHHHHHHHHhhcC
Q 006898 571 GFIFAAFPLVLFSCLALNYCHRWWRKQ 597 (626)
Q Consensus 571 r~~~~~~~~~~~a~~al~~~~~~~~~~ 597 (626)
|. -|-.+++.+.+...+.
T Consensus 503 r~---------~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 503 RD---------TAEKAIRQFLEKLEKV 520 (690)
T ss_pred hh---------HHHHHHHHHHhhhhhh
Confidence 99 8888888776554443
No 54
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.19 E-value=2.4e-06 Score=92.81 Aligned_cols=487 Identities=14% Similarity=0.106 Sum_probs=280.2
Q ss_pred HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHH
Q 006898 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (626)
Q Consensus 91 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ 170 (626)
+...+..+...+|..|.+|+..+.+.=+.-...+.+...+..-..|....||.+|..++|.+.-.- ++...++...+..
T Consensus 821 Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~qyY~~i~e 899 (1692)
T KOG1020|consen 821 ILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQYYDQIIE 899 (1692)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHHHHHHHHh
Confidence 334456677889999999999998753332222334445555667788899999999999876543 3455666677777
Q ss_pred hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch-----hhhhhhH--
Q 006898 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-----DCVAHIL-- 243 (626)
Q Consensus 171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~i~-- 243 (626)
...|+...||+.+++.+..++...+.-....++.--+..-.+|++..+...+.+++..+.=.-.+. .+...+.
T Consensus 900 rIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~ 979 (1692)
T KOG1020|consen 900 RILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLE 979 (1692)
T ss_pred hcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHH
Confidence 888999999999999999999877663333444445555578888889998888888764211111 1111111
Q ss_pred -HHHH---HhcCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHh------------cCCChHHHHH-HHHH
Q 006898 244 -PVIV---NFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRL------------LRDNEAEVRI-AAAG 302 (626)
Q Consensus 244 -~~l~---~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~------------l~d~~~~vr~-~a~~ 302 (626)
..+. .+..++.+..-....+.=.......+.+. .....+..+... ..+++.++|. +.+.
T Consensus 980 ~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~ls 1059 (1692)
T KOG1020|consen 980 VDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLS 1059 (1692)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHH
Confidence 1110 12222222111111100000000000000 001111111111 1223334444 5567
Q ss_pred hHHHHHHhhChH---HHHHhhHHHHHHhccC-CCHHHHHHHHHHHHhhhhhhc--HHHHHHhHHHHHHHhhcCCCHHHHH
Q 006898 303 KVTKFCRILNPE---LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDVRL 376 (626)
Q Consensus 303 ~l~~l~~~~~~~---~~~~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~ 376 (626)
.|..|++..+.- .+...+.|++..-+.. ...++-..++..+....+... .+.+...+-..+.+.+--..-..-.
T Consensus 1060 tL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~ 1139 (1692)
T KOG1020|consen 1060 TLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVV 1139 (1692)
T ss_pred HHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHH
Confidence 778887744321 2335566777654322 223444455544444443322 2344555555666665555555566
Q ss_pred HHHHhhHHHHhhh--chhhHHhhHHHHHHHHh---c----CC----ChHHHHHHHHHHHHHHHhh--------Chh----
Q 006898 377 NIISKLDQVNQVI--GIDLLSQSLLPAIVELA---E----DR----HWRVRLAIIEYIPLLASQL--------GVG---- 431 (626)
Q Consensus 377 ~a~~~L~~~~~~~--~~~~~~~~i~~~l~~~~---~----~~----~~~~r~~~~~~l~~l~~~~--------~~~---- 431 (626)
.|+.+++.+.... |.... ..++....+.+ + +. +...-...+-.++.++..+ |+.
T Consensus 1140 ~~vsCl~sl~~k~~~~~~~v-~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~ 1218 (1692)
T KOG1020|consen 1140 EAVSCLGSLATKRTDGAKVV-KACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQE 1218 (1692)
T ss_pred HHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhh
Confidence 7778888877653 22222 23333333322 1 11 2233344556666666643 222
Q ss_pred --hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChH-H-HHHHHHHHHHhccc--
Q 006898 432 --FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL-Y-RMTILRAISLLAPV-- 505 (626)
Q Consensus 432 --~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~-v-R~~a~~~l~~i~~~-- 505 (626)
...+.++-.+..+..+.+..+|..|...+|.+|-....-.....+...+.+.+++.+.. . +..+++.+......
T Consensus 1219 ~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee 1298 (1692)
T KOG1020|consen 1219 GETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEE 1298 (1692)
T ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777888899999999999999987666555666777777766665433 2 44444444332210
Q ss_pred --c--------------------------Ch----HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhc
Q 006898 506 --M--------------------------GS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFS 553 (626)
Q Consensus 506 --~--------------------------~~----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~ 553 (626)
+ +. ....+..++.++...-|.+..+|..|++.+.-+.... - ...-.
T Consensus 1299 ~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QG-L-VhP~~ 1376 (1692)
T KOG1020|consen 1299 KKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQG-L-VHPVH 1376 (1692)
T ss_pred HHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcc-C-CCccc
Confidence 0 00 0244667788888888999999999999999887652 1 11235
Q ss_pred ccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898 554 VSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH 591 (626)
Q Consensus 554 i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~ 591 (626)
.+|.|. .+-.|+...+|. .|..-|..+.
T Consensus 1377 cvPtLI-AL~Tdp~~~~r~---------~Ad~LL~eid 1404 (1692)
T KOG1020|consen 1377 CVPTLI-ALETDPSQAIRH---------VADELLKEID 1404 (1692)
T ss_pred hhhhhe-eecCChHHHHHH---------HHHHHHHHHH
Confidence 788888 899999999999 6666665553
No 55
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=2e-08 Score=99.28 Aligned_cols=392 Identities=17% Similarity=0.114 Sum_probs=227.9
Q ss_pred ccCCchHHHHHHHHHHhcc-ccccCCcchhhcchHHHhhhhc-CcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH-
Q 006898 56 NNDDDDEVLLAMAEELGVF-IPYVGGVEHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKR- 132 (626)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~-~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~- 132 (626)
..|.++++|...+..++-+ +...+ ...+.+.......+. +.+..+-..-..++-.++...++......+.--...
T Consensus 88 ~fDs~~s~~~K~~~l~~~l~~~~~~--~s~d~I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~ 165 (823)
T KOG2259|consen 88 IFDSDESSRKKLAILLGILEADFEN--GSTDAISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKV 165 (823)
T ss_pred hccccchhhhHHHHHhhHhhhhhcc--CchhHHHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHH
Confidence 4567777887777777766 22221 122333333222222 223334333444444444444332221111111111
Q ss_pred HhcCCccchhHHHhhHhHHhcCCCCh--HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHh
Q 006898 133 LAAGEWFTARVSACGLFHIAYPSAPD--ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL 210 (626)
Q Consensus 133 l~~~~~~~~r~~a~~~l~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l 210 (626)
.....+...|..+......+....++ ...+.+..-+..+.+|.+++||.+|++++-.+.+.+ .....++....+.
T Consensus 166 ~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~ 242 (823)
T KOG2259|consen 166 RSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKH 242 (823)
T ss_pred hhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHH
Confidence 11122233444444433333322221 233445555778889999999999999998887733 3345577788889
Q ss_pred hcCCchhHHHHHHHHHHHhhcccCc--------hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 006898 211 TQDDQDSVRLLAVEGCAALGKLLEP--------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282 (626)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~ 282 (626)
+.|++..||.+|++.+..+++..+. ....+..+..+...+.|.++.||-.+++.||.+..... +-+.
T Consensus 243 lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-----e~i~ 317 (823)
T KOG2259|consen 243 LSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-----EIIQ 317 (823)
T ss_pred hcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-----HHHH
Confidence 9999999999999999888887732 12334466667788899999999999999998765421 1122
Q ss_pred HHHH-HhcCC-ChHHHHHHHHHhHHHHH---H------hhChHHH---HHhhHH-----HHHHhccCCCHHHHHHHHHHH
Q 006898 283 PAYV-RLLRD-NEAEVRIAAAGKVTKFC---R------ILNPELA---IQHILP-----CVKELSSDSSQHVRSALASVI 343 (626)
Q Consensus 283 ~~l~-~~l~d-~~~~vr~~a~~~l~~l~---~------~~~~~~~---~~~l~~-----~l~~l~~d~~~~vr~~~~~~l 343 (626)
..+. +++++ ..+......-+.+..=+ . ..+.+.. ...++| .+...++|.-..||.++...+
T Consensus 318 QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl 397 (823)
T KOG2259|consen 318 QTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASL 397 (823)
T ss_pred HHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHH
Confidence 2222 12221 10111111111111111 1 1111110 122333 345667888899999999999
Q ss_pred HhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006898 344 MGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423 (626)
Q Consensus 344 ~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~ 423 (626)
+.++..-+ .|....+..+..+++|+...||..|+.+|..+...+.. .+..++.+.+.+.|.+..+|.++-+.+..
T Consensus 398 ~~La~ssP--~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i---~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 398 CSLATSSP--GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI---REEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHcCCC--CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee---cHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99885432 34566788899999999999999999999998877443 36788999999999999999998877764
Q ss_pred HHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhC
Q 006898 424 LASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (626)
Q Consensus 424 l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~ 468 (626)
. +....+. ....++..+-.+-+|.+ ....|++.+.+..+
T Consensus 473 ~-~~~d~~~i~m~v~~lL~~L~kyPqDrd-----~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 473 A-RVSDLECIDMCVAHLLKNLGKYPQDRD-----EILRCMGRIGQNHR 514 (823)
T ss_pred c-CCCcHHHHHHHHHHHHHHhhhCCCCcH-----HHHHHHHHHhccCh
Confidence 2 1111221 12333333433445543 55567777766544
No 56
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=3.4e-08 Score=97.69 Aligned_cols=212 Identities=17% Similarity=0.167 Sum_probs=113.2
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc--H------
Q 006898 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--K------ 352 (626)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--~------ 352 (626)
+...+..+.+|.++.||.+|+++|-.+.+ |.. +.+.+.....+++.|.+..||.++.+.+..++...+ .
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~k-L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSE--GFK-LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcc--ccc-ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 44445566667777777777777766666 221 123444555666677777777777766666655441 1
Q ss_pred HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHH----hhHHH----------------------------
Q 006898 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS----QSLLP---------------------------- 400 (626)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~----~~i~~---------------------------- 400 (626)
....+..+..+...+.|....||..|+++||.+.+. +.+.+. ++++.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v-See~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV-SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh-HHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 111223344445556677777777777777766432 111111 11111
Q ss_pred ----------------------HHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006898 401 ----------------------AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAAN 458 (626)
Q Consensus 401 ----------------------~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~ 458 (626)
.+..-++|.-+.||.+++..+..++..- ..|...-+..+..+++|....||..|..
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss--P~FA~~aldfLvDMfNDE~~~VRL~ai~ 432 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS--PGFAVRALDFLVDMFNDEIEVVRLKAIF 432 (823)
T ss_pred ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1111123333456666666666655322 1233344555566666666666666666
Q ss_pred HHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHH
Q 006898 459 NLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 501 (626)
Q Consensus 459 ~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~ 501 (626)
+|..+...+. +.+..++.+.+.+.|.+.++|.+.-..++.
T Consensus 433 aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 433 ALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 6666655532 234455666666666666666665555553
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.9e-07 Score=93.56 Aligned_cols=389 Identities=14% Similarity=0.149 Sum_probs=221.3
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhc
Q 006898 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA 135 (626)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~ 135 (626)
+++++--|...|.-++|++.. ++....+.|.+.++++++++.||+.|+.|.-++....|. +.+.+++-..+++.
T Consensus 116 L~s~nq~vVglAL~alg~i~s----~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ 189 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICS----PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLC 189 (866)
T ss_pred ccCCCeeehHHHHHHhhccCC----HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHh
Confidence 555666666677777777643 667777888888888888888888888888877776653 34556666666666
Q ss_pred CCccchhHHHhhHhHHhcCCCCh------HHHHHHHHHHHHhcCC-----------CCHHHHHHHHHhHHHHHHhhCc--
Q 006898 136 GEWFTARVSACGLFHIAYPSAPD------ILKTELRSIYTQLCQD-----------DMPMVRRSAASNLGKFAATVEP-- 196 (626)
Q Consensus 136 ~~~~~~r~~a~~~l~~~~~~~~~------~~~~~l~~~l~~l~~d-----------~~~~vR~~a~~~l~~l~~~~~~-- 196 (626)
+++..|-.++..++-.++...++ ...+.++.++.++... ++|-.+..+++.|.-+.+.-.+
T Consensus 190 ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daS 269 (866)
T KOG1062|consen 190 EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADAS 269 (866)
T ss_pred hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHH
Confidence 66666666555555555544321 2344444444443221 2334444444444433332221
Q ss_pred -----------------cchhhhHHHHHHHhh--cCCchhHHHHHHHHHHHhhcccCch-----------------hhhh
Q 006898 197 -----------------AHLKTDIMSIFEDLT--QDDQDSVRLLAVEGCAALGKLLEPQ-----------------DCVA 240 (626)
Q Consensus 197 -----------------~~~~~~ll~~l~~l~--~d~~~~vr~~a~~~l~~l~~~~~~~-----------------~~~~ 240 (626)
....+.|+--....+ -+++...|..|+.+|+.|...-... ....
T Consensus 270 d~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq 349 (866)
T KOG1062|consen 270 DLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ 349 (866)
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH
Confidence 111122222111111 1245567777777777766433221 0111
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHH
Q 006898 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQ 318 (626)
Q Consensus 241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~ 318 (626)
.=-..+..+++|++..+|+.+.+....+...-. ...++.-++..+...+++.+..++..+..+++.+.++ ++.+
T Consensus 350 rHr~tIleCL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~id 425 (866)
T KOG1062|consen 350 RHRSTILECLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHID 425 (866)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHH
Confidence 123356677889999999998888777664322 2345555666666667889998888888888887766 3444
Q ss_pred hhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHH--hHHHHH-HH-hhcCCCHHHHHHHHHhhHHHHhhhch---
Q 006898 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE--QLLPIF-LS-LLKDEFPDVRLNIISKLDQVNQVIGI--- 391 (626)
Q Consensus 319 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~--~l~~~l-~~-~l~d~~~~vr~~a~~~L~~~~~~~~~--- 391 (626)
.++..+...-+--++.+-...+.. ++..++...... .+...+ .. .+.-+.+...+.+.+++|+.+..+-.
T Consensus 426 tml~Vl~~aG~~V~~dv~~nll~L---Ia~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~ 502 (866)
T KOG1062|consen 426 TMLKVLKTAGDFVNDDVVNNLLRL---IANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGAN 502 (866)
T ss_pred HHHHHHHhcccccchhhHHHHHHH---HhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCcc
Confidence 554444443332233333333322 233333221111 111111 11 11223455677889999998754322
Q ss_pred -----hhHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 006898 392 -----DLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (626)
Q Consensus 392 -----~~~~~~i~~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~ 459 (626)
..-.+.++..+.+++.. .+..++..++.++.++...+... .+.+-.++..+...-+.++++.|.+.
T Consensus 503 ~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~elQQRa~E~ 575 (866)
T KOG1062|consen 503 EEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDTELQQRAVEY 575 (866)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccHHHHHHHHHH
Confidence 11124566666666543 35788999999999988776553 45566666677777788899888875
No 58
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.17 E-value=8.5e-09 Score=101.70 Aligned_cols=239 Identities=15% Similarity=0.049 Sum_probs=120.3
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhH
Q 006898 165 RSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243 (626)
Q Consensus 165 ~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 243 (626)
++.+...+ .+++..++..++.++..... ...+..+...+.|.++.||..+.++|+.+. .+...
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a~ 119 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQAE 119 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHHH
Confidence 34444444 35555665554444432100 112455555566666666666666665432 23445
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHH
Q 006898 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (626)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 323 (626)
+.+..++.++++.||..++.+++... .+-.+.+..+++|+++.||..|+.+++.+.. ....|.
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~---------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~ 182 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHR---------HDPGPALEAALTHEDALVRAAALRALGELPR--------RLSEST 182 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhc---------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHH
Confidence 55555556666666666655554411 1223455555666666666666666666543 233444
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHH
Q 006898 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (626)
Q Consensus 324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~ 403 (626)
+...+.|.++.||.+++..+..++. + .-++.+.....+....++..+...+... +. ..+++.|.
T Consensus 183 L~~al~d~~~~VR~aA~~al~~lG~----~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~ 246 (410)
T TIGR02270 183 LRLYLRDSDPEVRFAALEAGLLAGS----R----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLR 246 (410)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHcCC----H----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHH
Confidence 5555666666666666666555431 1 1122333333344444433333333322 11 24555555
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 404 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
.+++++. +|..++.+++.+.. ...++.++..+.|+. +|..|.+++..|.
T Consensus 247 ~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 247 ELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 5555544 56666665554431 224455555555443 6666666666664
No 59
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=6.4e-06 Score=87.82 Aligned_cols=506 Identities=11% Similarity=0.071 Sum_probs=298.0
Q ss_pred cCCchHHHHHHHHHHhccccccCCcchhhcchHH-HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHh-
Q 006898 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA- 134 (626)
Q Consensus 57 ~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~-l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~- 134 (626)
.+..+++-.++.+++.++.+..- .+.+.+..- +..+++-+-..+-..+.+.+..+++.+++ ....++.|.+..+.
T Consensus 322 ~s~~~e~~q~a~q~l~~il~~sv--~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~-~s~~~l~~~L~~l~~ 398 (1176)
T KOG1248|consen 322 ESLIEELVQAASQSLKEILKESV--TVIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGE-LSGPELTKTLEGLCD 398 (1176)
T ss_pred hcccHHHHHHHHHHHHHHhcccC--cccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhh-hcCHHHHHHHHHHHH
Confidence 45677777777788777765322 122333332 44444444444555566666666666655 22334445444433
Q ss_pred --cCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhc
Q 006898 135 --AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 212 (626)
Q Consensus 135 --~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~ 212 (626)
.+++...+...-.+++......+++..-.++|+=+ ..+...-.|.-.+=.|...+....-..|.++++|+...+..
T Consensus 399 lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl--~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~ 476 (1176)
T KOG1248|consen 399 LRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL--HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQL 476 (1176)
T ss_pred hhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc--cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Confidence 23444555566677888888888776666666544 22222334444444444433333334566677776555421
Q ss_pred ------CCc--h-hHHHHHHHH---HHHhhcccCc-hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--C--
Q 006898 213 ------DDQ--D-SVRLLAVEG---CAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--E-- 275 (626)
Q Consensus 213 ------d~~--~-~vr~~a~~~---l~~l~~~~~~-~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~-- 275 (626)
+.. . .++....+. |+.++..-.. +.-...+.|.+...+.- .+..|...+.+|..+...... +
T Consensus 477 K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~ 555 (1176)
T KOG1248|consen 477 KAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAA 555 (1176)
T ss_pred HHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHH
Confidence 111 1 122222222 2223322111 22244555665555443 338899999988888765310 0
Q ss_pred -------ccccchHHHHHHhcCCCh------HHHHHHHHHhHH-HHHHhhChHHHHHhhHHHHHHhccCCCHHHH----H
Q 006898 276 -------PTRMDLVPAYVRLLRDNE------AEVRIAAAGKVT-KFCRILNPELAIQHILPCVKELSSDSSQHVR----S 337 (626)
Q Consensus 276 -------~~~~~l~~~l~~~l~d~~------~~vr~~a~~~l~-~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr----~ 337 (626)
......+|.+.+...... ...|...+.... ...+..+.+ +...+...+.++..+.+..++ .
T Consensus 556 e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~d-v~~~l~~s~~e~as~~~~s~~~~~~~ 634 (1176)
T KOG1248|consen 556 ENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTD-VVGSLKDSAGELASDLDESVASFKTL 634 (1176)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHhHhccchhhhhhHHHH
Confidence 012346777777665433 233443333333 222222332 334455555666666544433 3
Q ss_pred HHHHHHHhhhhhhcHHHHHHhHHHHHHHhh-cCCCHHHHHHHHHhhHHHHhhhchhhH----HhhHHHHHHHHhcCCChH
Q 006898 338 ALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWR 412 (626)
Q Consensus 338 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~L~~~~~~~~~~~~----~~~i~~~l~~~~~~~~~~ 412 (626)
..+..+..++.....+.+...+ .+...+ +.....++..+.+-|..++..-..+.+ .+.+...+.+-.++....
T Consensus 635 slLdl~~~~a~~~~e~~vs~l~--~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~ 712 (1176)
T KOG1248|consen 635 SLLDLLIALAPVQTESQVSKLF--TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSP 712 (1176)
T ss_pred HHHHHHHhhhccccchhHHHHH--HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchH
Confidence 4444455555555544433322 222333 344789999999999998876221111 245666666667777888
Q ss_pred HHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--HH---hChH---HHhhhhHHHHHh
Q 006898 413 VRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLA--EE---FGPE---WAMQHITPQVLE 482 (626)
Q Consensus 413 ~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~--~~---~~~~---~~~~~il~~l~~ 482 (626)
.|...+.++..+.+.++.+.+ ....+|-++-.+.+.+..-|+.|..+|-.++ .. .|.+ ...+.+++.+..
T Consensus 713 ~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isa 792 (1176)
T KOG1248|consen 713 AQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISA 792 (1176)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHh
Confidence 999999999999998885432 2444554444558888889999999998888 32 2322 244667777776
Q ss_pred hhcCCChHHHHHHHHHHHHhccccC---hHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc---hhhhcccc
Q 006898 483 MINNPHYLYRMTILRAISLLAPVMG---SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VSTFSVSP 556 (626)
Q Consensus 483 ~l~~~~~~vR~~a~~~l~~i~~~~~---~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~ 556 (626)
.+-.....++...+-+++.+....+ ...+.+.++..+..++..+.+.++..|+..+..+...++.. .+.+.++|
T Consensus 793 gl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~ 872 (1176)
T KOG1248|consen 793 GLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLP 872 (1176)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHH
Confidence 6656666666665667777665332 34577889999999999999999999999999999888764 56677899
Q ss_pred hHHhhhccCCCccccc
Q 006898 557 FSFMLYLNVNNFNVGF 572 (626)
Q Consensus 557 ~l~~~l~~d~d~~vr~ 572 (626)
.+. ++..|....+|.
T Consensus 873 sll-~ls~d~k~~~r~ 887 (1176)
T KOG1248|consen 873 SLL-ALSHDHKIKVRK 887 (1176)
T ss_pred HHH-HHHHhhhHHHHH
Confidence 999 899998888887
No 60
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.16 E-value=1.2e-08 Score=100.77 Aligned_cols=240 Identities=15% Similarity=0.073 Sum_probs=163.8
Q ss_pred HHHHHHHhh-cCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 006898 203 IMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL 281 (626)
Q Consensus 203 ll~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 281 (626)
.++.+...+ .|++..++..+..++.... ....+..+...+.|.+..||..++++|+.+. ....
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a 118 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQA 118 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHH
Confidence 455555556 5677788877666664321 1223677778888899999999999998654 3567
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHH
Q 006898 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 361 (626)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 361 (626)
.+.+..++++.++.+|..++.+++.... .-.+.+..+++|+++.||..++.+++.+.. ....|
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~ 181 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPR--------RLSES 181 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence 7888889999999999888877776332 123556666789999999999999988863 23455
Q ss_pred HHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHH
Q 006898 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 441 (626)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l 441 (626)
.+...+.|.++.||.+|+.+++.+.. ....+.+..+..++.+..+..+...+... +. +..++.+
T Consensus 182 ~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L 245 (410)
T TIGR02270 182 TLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL 245 (410)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence 56777899999999999999977643 23344555545555554444433333322 22 2456667
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 006898 442 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (626)
Q Consensus 442 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~ 503 (626)
..+++|+. +|..++.++|.+.. ...++.+.+.+.|+. +|..+.+++..|.
T Consensus 246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 77777755 88888888876632 235677777776654 7888888888775
No 61
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.14 E-value=7.2e-10 Score=100.57 Aligned_cols=265 Identities=12% Similarity=0.078 Sum_probs=182.0
Q ss_pred HhhHHHHHHhc-cCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc-h-
Q 006898 318 QHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-I- 391 (626)
Q Consensus 318 ~~l~~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~-~- 391 (626)
..++|.+.+++ +.......-.++.++..+++.-... ......+|.+.++|.+.+.+||..++.+|+.+..... -
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 45567777766 3344455567777777776533221 1123467888888888888899999998888753211 0
Q ss_pred -hhHHhhHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 006898 392 -DLLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (626)
Q Consensus 392 -~~~~~~i~~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (626)
-.+.-..+..++.++.+.. ..+-..+.-.++.++.+-.+.. .....+|++.+++...+++|-.-|++++..+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 0111234455555555433 2444445556777766544322 335679999999999999999999999999876
Q ss_pred HhChH---HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH---HhhhcHHHHHhhhCCCCCchHHHHHHHHHH
Q 006898 466 EFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQ 539 (626)
Q Consensus 466 ~~~~~---~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~ 539 (626)
.-... .....+.+.|.+++.+++..+..-+++.+|+++..-+.. .+.-..++.+..++.++..++|..||+++.
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 43221 123556788999999999999999999999998643322 233457788888899999999999999999
Q ss_pred HHHhhhcc---chhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHH
Q 006898 540 SLIPIVDQ---SVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHR 592 (626)
Q Consensus 540 ~i~~~~~~---~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~ 592 (626)
+|---.-. ......+.|.|. .++...+..++- -|++|++...+
T Consensus 353 NITAGnteqiqavid~nliPpLi-~lls~ae~k~kK---------EACWAisNats 398 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLI-HLLSSAEYKIKK---------EACWAISNATS 398 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHH-HHHHHHHHHHHH---------HHHHHHHhhhc
Confidence 97432111 244567888888 888888888888 89999987643
No 62
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=4.5e-06 Score=83.99 Aligned_cols=400 Identities=14% Similarity=0.074 Sum_probs=211.3
Q ss_pred HHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhh
Q 006898 122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKT 201 (626)
Q Consensus 122 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~ 201 (626)
+...+.+-+..+++..-+.+|..|+.++-.++-.-++ ....-+|-|..-++|+++.|..+|...+..+++..++.. .
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-L- 217 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-L- 217 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc-c-
Confidence 3344556666677777778888887777666544432 334455666777889999999999999999998766543 2
Q ss_pred hHHHHHHHhhcCC--chhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH---hCC-C
Q 006898 202 DIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA---VGP-E 275 (626)
Q Consensus 202 ~ll~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~---~~~-~ 275 (626)
.+-|.|.+++.+. +| +-...++.++++...-++ .-..++|.+..++.+.+. .....+|+..+... .|- +
T Consensus 218 ~LAP~ffkllttSsNNW-mLIKiiKLF~aLtplEPR--LgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNW-VLIKLLKLFAALTPLEPR--LGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred cccHHHHHHHhccCCCe-ehHHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCC
Confidence 2557777766543 44 333455566655533222 234567777776654432 12223333333322 111 1
Q ss_pred --ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH
Q 006898 276 --PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353 (626)
Q Consensus 276 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (626)
....-.+.-+..++.|.+++.+--.+-++.++++.-+.. .+.--..+.+.+.|.++.+|.-++..+-.+... +
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk---k 367 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDKDESIRLRALDLLYGMVSK---K 367 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh---h
Confidence 112235555666778888899888888888887642221 233345567778899999998888777766532 2
Q ss_pred HHHHhHHHHHHHhhcCCC-HHHHHHHHHhhHHHHhhhchhhH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh
Q 006898 354 ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (626)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~L~~~~~~~~~~~~--~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 430 (626)
. ...++..++..+.+.+ ...|...+..+-.+|..-....+ .+..+..+.++.+=+..+.-.-..+.+..++- ..
T Consensus 368 N-l~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~i--RV 444 (877)
T KOG1059|consen 368 N-LMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAI--RV 444 (877)
T ss_pred h-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHhe--ec
Confidence 2 2234444554444333 36666666555555543322211 12234444444332221111111111111110 00
Q ss_pred hhHHHHHHHHHHHHhcCC-----------chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCC-ChHHH----HH
Q 006898 431 GFFDDKLGALCMQWLQDK-----------VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYR----MT 494 (626)
Q Consensus 431 ~~~~~~l~p~l~~~l~d~-----------~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~-~~~vR----~~ 494 (626)
....+..+..+..++.|+ -.+|-.+|+|++|.+...+... ..++..+.+--.+- ...+. ++
T Consensus 445 ~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---~~~leamlrpr~~~lp~~iq~vyvqn 521 (877)
T KOG1059|consen 445 PSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---NDTLEAMLRPRSDLLPGHIQAVYVQN 521 (877)
T ss_pred hhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---HHHHHHHhcCccccCchHHHHHHHHH
Confidence 011111222222333322 3567789999999998876543 22333333211111 11222 23
Q ss_pred HHHHHHHhccccChH-------HhhhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898 495 ILRAISLLAPVMGSE-------ITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540 (626)
Q Consensus 495 a~~~l~~i~~~~~~~-------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 540 (626)
+...+..++....+. ...+.++..|-.+....+-+|+..|-.++.-
T Consensus 522 i~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~l 574 (877)
T KOG1059|consen 522 IVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLEL 574 (877)
T ss_pred HHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHH
Confidence 333333333332221 1235566667777778888888886555543
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.5e-06 Score=88.42 Aligned_cols=386 Identities=12% Similarity=0.108 Sum_probs=219.5
Q ss_pred chhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHH
Q 006898 140 TARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR 219 (626)
Q Consensus 140 ~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr 219 (626)
.....++-.++.+...++++....+.|.+..++++.++.||+.|+.+..++....+ ...+.+++.+.+++.+.+.-|-
T Consensus 119 ~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P--~l~e~f~~~~~~lL~ek~hGVL 196 (866)
T KOG1062|consen 119 SNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP--DLVEHFVIAFRKLLCEKHHGVL 196 (866)
T ss_pred CCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc--hHHHHhhHHHHHHHhhcCCcee
Confidence 33445555666666677788888888888888888888899988888888877654 4456677777777777666666
Q ss_pred HHHHHHHHHhhcccCc-----hhhhhhhHHHHHHh-----------------------------cCCCCHHHHHHHHHHH
Q 006898 220 LLAVEGCAALGKLLEP-----QDCVAHILPVIVNF-----------------------------SQDKSWRVRYMVANQL 265 (626)
Q Consensus 220 ~~a~~~l~~l~~~~~~-----~~~~~~i~~~l~~~-----------------------------~~d~~~~vR~~a~~~l 265 (626)
.+++..+..+++..+. ....+.++..++++ +...+..........|
T Consensus 197 ~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiL 276 (866)
T KOG1062|consen 197 IAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDIL 276 (866)
T ss_pred eeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 5555555555554221 12233333333222 2223333334444555
Q ss_pred HHHHHHhCCC--ccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhChH-----------------HHHHhhHHHHH
Q 006898 266 YELCEAVGPE--PTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE-----------------LAIQHILPCVK 325 (626)
Q Consensus 266 ~~l~~~~~~~--~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-----------------~~~~~l~~~l~ 325 (626)
++++...... ....-+.+.+...+. +++...|..|+..|++|...-+.. ...+.=-..+.
T Consensus 277 aqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIl 356 (866)
T KOG1062|consen 277 AQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTIL 356 (866)
T ss_pred HHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHH
Confidence 5555432211 111123333333332 455788999999998887643211 01122223455
Q ss_pred HhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHH
Q 006898 326 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405 (626)
Q Consensus 326 ~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~ 405 (626)
+.++|++..+|+-+.+..-.+...-. ...++.-++.+|...+++.+...+..+..+.+.+.++.. ..+..+.+.
T Consensus 357 eCL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~--W~idtml~V 430 (866)
T KOG1062|consen 357 ECLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKR--WHIDTMLKV 430 (866)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcch--hHHHHHHHH
Confidence 66789999999988887777654322 334555566666666888998888888888888877642 233444444
Q ss_pred hcCCChHHHHHHHHHHHHHH-HhhChhhHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHhCh--------HH
Q 006898 406 AEDRHWRVRLAIIEYIPLLA-SQLGVGFFDDKLGALCMQW-----LQDKVYSIRDAAANNLKRLAEEFGP--------EW 471 (626)
Q Consensus 406 ~~~~~~~~r~~~~~~l~~l~-~~~~~~~~~~~l~p~l~~~-----l~d~~~~VR~~a~~~l~~l~~~~~~--------~~ 471 (626)
+....-.++......+-.+. ++++...- .......... +.-+....-+.+.||+|...+.+-. ..
T Consensus 431 l~~aG~~V~~dv~~nll~LIa~~~~e~~~-y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~v 509 (866)
T KOG1062|consen 431 LKTAGDFVNDDVVNNLLRLIANAFQELHE-YAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKV 509 (866)
T ss_pred HHhcccccchhhHHHHHHHHhcCCcchhh-HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcC
Confidence 43333334444443333332 23232211 1111111111 1223445677899999998854321 11
Q ss_pred HhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHH
Q 006898 472 AMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAK 536 (626)
Q Consensus 472 ~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~ 536 (626)
....++..+.+.+.. .+..+|..++.++..+...+... .+++-..+..+...-+.++++.|.+
T Consensus 510 tesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 510 TESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccHHHHHHHHH
Confidence 235677777776543 45889999999999887654432 2334444444444555555555543
No 64
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.1e-07 Score=96.65 Aligned_cols=510 Identities=13% Similarity=0.133 Sum_probs=261.8
Q ss_pred CCCcccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccccc-CCchHHHHHHHHHHhccccccCCcch
Q 006898 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEH 83 (626)
Q Consensus 5 ~~~~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~-~~~~~vr~~~~~~l~~~~~~~~~~~~ 83 (626)
+++...+..+...+.|.-...|..|++.+-.- ..+|.+ ...+.|-+..+. -.+-+..+.+-.-+.+.++ +.+..
T Consensus 9 ~~~k~ei~elks~l~s~~~~kr~~a~kkvIa~-Mt~G~D--vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~--~~P~~ 83 (734)
T KOG1061|consen 9 TDKKGEIPELKSQLNSQSKEKRKDAVKKVIAY-MTVGKD--VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK--GKPDL 83 (734)
T ss_pred cchhhhchHHHHHhhhhhhhhHHHHHHHHHhc-CccCcc--hHhhhHHHHhhcccCCchHHHHHHHHHHHhhc--cCchH
Confidence 44556677777788777777777776554432 234432 344554444432 2345555555555666555 22333
Q ss_pred hhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH-HHH
Q 006898 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKT 162 (626)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~ 162 (626)
.-..++.+.+=..|+++.+|..|++.++.+ .-..+.+++..-+.+..+|+++.+|..++.+...+...-++. ...
T Consensus 84 a~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~ 159 (734)
T KOG1061|consen 84 AILAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDS 159 (734)
T ss_pred HHhhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcccc
Confidence 334444455556677888888777766543 333444555555666777777888888877777776655543 445
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc---hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh-h
Q 006898 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-C 238 (626)
Q Consensus 163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~ 238 (626)
.+.+.+..++.|+++.|=..|..++..+.+.-+... ....++..++..++.-+.- .-+..+..+....+++. -
T Consensus 160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW---~qi~IL~~l~~y~p~d~~e 236 (734)
T KOG1061|consen 160 GLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEW---GQIFILDCLAEYVPKDSRE 236 (734)
T ss_pred chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhh---hHHHHHHHHHhcCCCCchh
Confidence 567777777778888888888888888777654311 1122222222222221111 11222222223332211 1
Q ss_pred hhhhHHHHHHhcCCCCH----------------------------------------HHHHHHHHHHHHHHHHhCCCccc
Q 006898 239 VAHILPVIVNFSQDKSW----------------------------------------RVRYMVANQLYELCEAVGPEPTR 278 (626)
Q Consensus 239 ~~~i~~~l~~~~~d~~~----------------------------------------~vR~~a~~~l~~l~~~~~~~~~~ 278 (626)
...++..+...+.+.+. .+...+...+..+....++ ...
T Consensus 237 a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~-~~~ 315 (734)
T KOG1061|consen 237 AEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPE-ILK 315 (734)
T ss_pred HHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChH-HHH
Confidence 11122222222222222 3444444444333333221 100
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHh
Q 006898 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 358 (626)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 358 (626)
.++.-.+.+ ..|+. .|+..-++.+..++. .+. .+.++.-+.+...+.+...-+.++++++.++-...+. ..
T Consensus 316 ~~~~~Ff~k-ynDPi-YvK~eKleil~~la~---~~n-l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~ 386 (734)
T KOG1061|consen 316 VEIKVFFCK-YNDPI-YVKLEKLEILIELAN---DAN-LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---ND 386 (734)
T ss_pred hHhHeeeee-cCCch-hhHHHHHHHHHHHhh---HhH-HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hh
Confidence 010000000 01111 233333333333222 111 2345666666677777777777788888887655443 56
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhhHHHHH
Q 006898 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKL 437 (626)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~l 437 (626)
+++.++.+++-....|-+.+...+..+....+... +.+.+.+.....+ .++.-|.+.+-.++.-++..... ..+
T Consensus 387 cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~el 461 (734)
T KOG1061|consen 387 CVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LEL 461 (734)
T ss_pred hHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHH
Confidence 77778888775555555566666666655544322 4455555444333 35667777777777766655442 346
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh-hcC-CChHHHHHHHHHHHHhccccChH----Hh
Q 006898 438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INN-PHYLYRMTILRAISLLAPVMGSE----IT 511 (626)
Q Consensus 438 ~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~-l~~-~~~~vR~~a~~~l~~i~~~~~~~----~~ 511 (626)
+..+...+.|....|+..-..+.-+++-.... ..++.+..++.. ..| .++++|-.++....-+.. ++. ..
T Consensus 462 L~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~--~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~--~~~~a~~v~ 537 (734)
T KOG1061|consen 462 LESFLENFKDETAEVQLELLTAAIKLFLKKPT--ETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSE--DPLIAKDVV 537 (734)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhc--CHHHHHHHH
Confidence 66677778888888876665555444433332 234455555543 333 356777666654443331 221 11
Q ss_pred hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhc
Q 006898 512 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (626)
Q Consensus 512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 546 (626)
.... |.+.......++.+-.....-++.+...+.
T Consensus 538 ~~~k-P~is~~~~~~~p~~le~l~~~i~tlssVY~ 571 (734)
T KOG1061|consen 538 LAEK-PLISEETDSLDPTLLEELLCDIGTLSSVYH 571 (734)
T ss_pred hcCC-CccccCCCCCCchHHHHHHHhhccccceee
Confidence 1111 333333333556666666666666665553
No 65
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=6.8e-06 Score=82.74 Aligned_cols=230 Identities=14% Similarity=0.094 Sum_probs=154.6
Q ss_pred hHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHH
Q 006898 149 FHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA 228 (626)
Q Consensus 149 l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~ 228 (626)
++.+....++....++-+-+..++++..+.+|+.|.-.+-.+....+. ....-+|-|.+-+.|+|+.|..+|+..+-.
T Consensus 130 L~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe--Alr~~FprL~EkLeDpDp~V~SAAV~VICE 207 (877)
T KOG1059|consen 130 LSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE--ALRPCFPRLVEKLEDPDPSVVSAAVSVICE 207 (877)
T ss_pred ecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH--hHhhhHHHHHHhccCCCchHHHHHHHHHHH
Confidence 333444445566677888888999999999999999998887765543 233456778888999999999999999998
Q ss_pred hhcccCchhhhhhhHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh-HHHHHHHHHhHH
Q 006898 229 LGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVT 305 (626)
Q Consensus 229 l~~~~~~~~~~~~i~~~l~~~~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~ 305 (626)
++..-+.. + -.+-|.+.+++ ++.+|. -.-.++.|+.+...-+. ....++|.+.++++... ..+--.|+.++-
T Consensus 208 LArKnPkn-y-L~LAP~ffkllttSsNNWm-LIKiiKLF~aLtplEPR--LgKKLieplt~li~sT~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 208 LARKNPQN-Y-LQLAPLFYKLLVTSSNNWV-LIKLLKLFAALTPLEPR--LGKKLIEPITELMESTVAMSLLYECVNTVV 282 (877)
T ss_pred HHhhCCcc-c-ccccHHHHHHHhccCCCee-hHHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHHHHHHHHHHHHhe
Confidence 88776653 2 23456665554 345664 33345666666543111 12467888888887654 233334444433
Q ss_pred HHHHhhCh---HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhh
Q 006898 306 KFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (626)
Q Consensus 306 ~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L 382 (626)
...-..|. ....+-.+..+..++.|.++.+|.-.+-+++.+++..+.. ...--..++.+|.|.|+++|..|+.-+
T Consensus 283 a~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 283 AVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDKDESIRLRALDLL 360 (877)
T ss_pred eehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccCCchhHHHHHHHH
Confidence 22111121 1233455666777889999999999999999988765442 233456789999999999999999888
Q ss_pred HHHHh
Q 006898 383 DQVNQ 387 (626)
Q Consensus 383 ~~~~~ 387 (626)
..+..
T Consensus 361 ~gmVs 365 (877)
T KOG1059|consen 361 YGMVS 365 (877)
T ss_pred HHHhh
Confidence 77654
No 66
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.4e-06 Score=85.72 Aligned_cols=457 Identities=12% Similarity=0.083 Sum_probs=249.0
Q ss_pred cccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhh---hcCcchHHHHHHHHHHHHHHhhcChhhHHHhHH
Q 006898 51 PFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL---CTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127 (626)
Q Consensus 51 ~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l---~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~ 127 (626)
...+..+..++..|+..--.++.+...- ...+-....+ .+..++.+|-.|+++|..|...---. .+-
T Consensus 68 ~~tKlfQskd~~LRr~vYl~Ikels~is------edviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~----~ie 137 (865)
T KOG1078|consen 68 AITKLFQSKDVSLRRMVYLAIKELSKIS------EDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQ----AIE 137 (865)
T ss_pred HHHHHHhhcCHHHHHHHHHHHhhccccc------hhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhH----HHH
Confidence 3334456778888888888888765521 2222223333 34457778888888888775532111 223
Q ss_pred HHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHH
Q 006898 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207 (626)
Q Consensus 128 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l 207 (626)
.++.+..-|.+..++..+.-.--.+.+ ..................+.+..++..+...+..+.+.- ....+.++..+
T Consensus 138 ry~kqaivd~~~avSsaalvss~hll~-~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~d--rla~sklv~~~ 214 (865)
T KOG1078|consen 138 RYMKQAIVDKNPAVSSAALVSSYHLLP-ISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKND--RLAVSKLVQKF 214 (865)
T ss_pred HHHHhHeeccccccchHHHHHHhhhhc-ccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHH
Confidence 334444455554444332211111111 222333444444444445555566666655555553321 11222233322
Q ss_pred HH-hhcCCch--hHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 006898 208 ED-LTQDDQD--SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 284 (626)
Q Consensus 208 ~~-l~~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~ 284 (626)
.+ .+.++-. ..-..+...+..- ......+.+++..++.++...|-..++.++..+....+.+..+ .+..
T Consensus 215 ~~~~~~~~~A~~~lir~~~~~l~~~------~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--avs~ 286 (865)
T KOG1078|consen 215 TRGSLKSPLAVCMLIRIASELLKEN------QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--AVSV 286 (865)
T ss_pred ccccccchhHHHHHHHHHHHHhhhc------ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch--HHHH
Confidence 22 1122211 0001111122111 2234567888888889888888888888887776554444332 5566
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHH
Q 006898 285 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL 364 (626)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 364 (626)
+..+++.+.+-+|-+|...|.+++...+... ...=+-+..+.+|.+..+-.-++..+-.- |.+...+.++..+.
T Consensus 287 Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~cN~elE~lItd~NrsIat~AITtLLKT----G~e~sv~rLm~qI~ 360 (865)
T KOG1078|consen 287 LQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TVCNLDLESLITDSNRSIATLAITTLLKT----GTESSVDRLMKQIS 360 (865)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--cccchhHHhhhcccccchhHHHHHHHHHh----cchhHHHHHHHHHH
Confidence 6677788888999999999998877543321 22223456667777765544444333332 33444555665555
Q ss_pred HhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 006898 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443 (626)
Q Consensus 365 ~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~ 443 (626)
.+..|-+.+-+.-+..++..++..+...+ ..+++.+.+++. +.....+.+.++++..+....... ++.-+..+..
T Consensus 361 ~fv~disDeFKivvvdai~sLc~~fp~k~--~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCe 436 (865)
T KOG1078|consen 361 SFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCE 436 (865)
T ss_pred HHHHhccccceEEeHHHHHHHHhhccHHH--HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHH
Confidence 55554444444444445555555444433 356677777665 445777788888877776643221 1112222333
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhC
Q 006898 444 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 523 (626)
Q Consensus 444 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l 523 (626)
.+.|.. .+.-+...+..+.............+-.+.+..-=.|..+|.+|+.++.+++ .+.+...+.+.-.+.+++
T Consensus 437 fIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~ 512 (865)
T KOG1078|consen 437 FIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCL 512 (865)
T ss_pred HHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHh
Confidence 333332 2333444444444332211112333444444444468889999999999988 344445567777888899
Q ss_pred CCCCchHHHHHHHHHHHHH
Q 006898 524 KDRVPNIKFNVAKVLQSLI 542 (626)
Q Consensus 524 ~d~~~~vR~~a~~~l~~i~ 542 (626)
.|++.+||..|.-.+..+-
T Consensus 513 ~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 513 NDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred cCchHHHHHHHHHHHHHhh
Confidence 9999999999988888776
No 67
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.04 E-value=5.6e-09 Score=96.92 Aligned_cols=187 Identities=14% Similarity=0.169 Sum_probs=132.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh----hhHHH---HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh
Q 006898 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (626)
Q Consensus 397 ~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~----~~~~~---~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~ 469 (626)
.+.+.+.+-..+.+|..|..++..+..+...... ..+.+ .+.+.+...+.|....|-..|+.+++.++..++.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444678899999999999998876611 12222 2335666778888888999999999999999887
Q ss_pred HH--HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcH-HHHHhhhCCCCCchHHHHHHHHHHHHHhhhc
Q 006898 470 EW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (626)
Q Consensus 470 ~~--~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~-l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 546 (626)
.+ ..+.++|.|.+.+.+++..+|..+..++..+++.++. ...+ .+.+....+++++.+|..++..+..+....+
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 63 3478999999999999999999999999999998871 1334 7888889999999999999999999998888
Q ss_pred --cc-----hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898 547 --QS-----VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRK 596 (626)
Q Consensus 547 --~~-----~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~ 596 (626)
.+ ...+.+.+.+. +.++|++.+||. +|..++..+.+..+.
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~-~~l~D~~~~VR~---------~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALV-KLLSDADPEVRE---------AARECLWALYSHFPE 210 (228)
T ss_dssp ---GGG--HHHHHHHHHHHH-HHHTSS-HHHHH---------HHHHHHHHHHHHH-H
T ss_pred chHhhhcccchHHHHHHHHH-HHCCCCCHHHHH---------HHHHHHHHHHHHCCH
Confidence 22 12357889999 999999999999 999999888766543
No 68
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.1e-07 Score=90.66 Aligned_cols=446 Identities=11% Similarity=0.079 Sum_probs=240.2
Q ss_pred chHHHHHHHHHHHHHHhhcChhhHHHhHHHHH------------HHHhcCCccchhHHHhhHhHHhcCCC----------
Q 006898 99 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLV------------KRLAAGEWFTARVSACGLFHIAYPSA---------- 156 (626)
Q Consensus 99 ~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l------------~~l~~~~~~~~r~~a~~~l~~~~~~~---------- 156 (626)
+..||..|..++....+.+++..+.+++-.++ .-.++|++++.|..|.+..+.+....
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 55688888888888888877766555532222 11246777778877776665544321
Q ss_pred -----ChH------HHHHHHHHHH-HhcCCCCHHHHHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhcCCchhHHH
Q 006898 157 -----PDI------LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQDSVRL 220 (626)
Q Consensus 157 -----~~~------~~~~l~~~l~-~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~~~~vr~ 220 (626)
.+. ...++...++ .+....++.+-..+++++..+++..+-. .+..++...+..++.+.++.||.
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 110 1122222333 3344556777778899999998876532 33455667777888999999999
Q ss_pred HHHHHHHHhhcccCc--h----------------------hhhhh------------------------------hHHHH
Q 006898 221 LAVEGCAALGKLLEP--Q----------------------DCVAH------------------------------ILPVI 246 (626)
Q Consensus 221 ~a~~~l~~l~~~~~~--~----------------------~~~~~------------------------------i~~~l 246 (626)
.++..++.+...... + +.+++ +.|..
T Consensus 169 s~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~ 248 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLP 248 (728)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecC
Confidence 999998887643221 0 00000 00000
Q ss_pred HH----------hcCC--CCHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh
Q 006898 247 VN----------FSQD--KSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (626)
Q Consensus 247 ~~----------~~~d--~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (626)
.+ .... ....+|-.+.+.+..++.++|-.. ...++...+...+.+.+|.++..+...+.+++...+.
T Consensus 249 ~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~ 328 (728)
T KOG4535|consen 249 KEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQ 328 (728)
T ss_pred CccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhh
Confidence 00 0000 012356666666776766655211 1123444455556788889999888888888775542
Q ss_pred HH--------HHHh-hHHHHH-----Hhc-cCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCC-CHHHH
Q 006898 314 EL--------AIQH-ILPCVK-----ELS-SDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDE-FPDVR 375 (626)
Q Consensus 314 ~~--------~~~~-l~~~l~-----~l~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~vr 375 (626)
+. .... +...+. ... +...+....+.|..+..++..-.. +.-.....+.+.....|. +.-|+
T Consensus 329 ~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~ 408 (728)
T KOG4535|consen 329 QYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVK 408 (728)
T ss_pred hcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHH
Confidence 21 0001 000000 001 112234455666666666542110 111123445555555544 34566
Q ss_pred HHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHH
Q 006898 376 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDA 455 (626)
Q Consensus 376 ~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~ 455 (626)
.+|.++++-+.-+-+... .|... ..-...+...+.|+..++|..
T Consensus 409 ~aA~Ra~~VyVLHp~lr~-------------------d~~fv-----------------~~aa~~il~sl~d~~ln~r~K 452 (728)
T KOG4535|consen 409 AAASRALGVYVLHPCLRQ-------------------DVIFV-----------------ADAANAILMSLEDKSLNVRAK 452 (728)
T ss_pred HHHHhhceeEEeccchhh-------------------hHHHH-----------------HHHHHHHHHHhhhHhHhHHHH
Confidence 667666654432211100 00000 011112333445556666667
Q ss_pred HHHHHHHHHHHhCh-----HHHh----hhhHHHHHhh---hcCCChHHHHHHHHHHHHhccccCh------HHhh-hcHH
Q 006898 456 AANNLKRLAEEFGP-----EWAM----QHITPQVLEM---INNPHYLYRMTILRAISLLAPVMGS------EITC-SRLL 516 (626)
Q Consensus 456 a~~~l~~l~~~~~~-----~~~~----~~il~~l~~~---l~~~~~~vR~~a~~~l~~i~~~~~~------~~~~-~~~l 516 (626)
++++++.|...+-. +-.. ..++..+... ..-.+++||..+.++++++.+.+.+ .... ....
T Consensus 453 aawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~ 532 (728)
T KOG4535|consen 453 AAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQ 532 (728)
T ss_pred HHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHH
Confidence 77776666654311 1111 2222222222 1224788999999999998765442 1111 1222
Q ss_pred HHHhhhCCCCCchHHHHHHHHHHHHHhhh----ccchhhhcccchHHhhhc-cCCCcccccccccCchhHHHHHHHHHH
Q 006898 517 PVVINASKDRVPNIKFNVAKVLQSLIPIV----DQSVSTFSVSPFSFMLYL-NVNNFNVGFIFAAFPLVLFSCLALNYC 590 (626)
Q Consensus 517 ~~l~~~l~d~~~~vR~~a~~~l~~i~~~~----~~~~~~~~i~~~l~~~l~-~d~d~~vr~~~~~~~~~~~a~~al~~~ 590 (626)
..+..-.......||+++|.+++++..+- .+..+...++++|. .+. +..+..||. .|+.||.+.
T Consensus 533 ~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~-~Lv~~~~NFKVRi---------~AA~aL~vp 601 (728)
T KOG4535|consen 533 ALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALT-SLVTSCKNFKVRI---------RAAAALSVP 601 (728)
T ss_pred hcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHH-HHHHHhccceEee---------hhhhhhcCC
Confidence 22222334556789999999999998653 23467778899988 654 567889999 777776654
No 69
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.04 E-value=6.8e-09 Score=104.13 Aligned_cols=256 Identities=13% Similarity=0.197 Sum_probs=207.9
Q ss_pred CCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC
Q 006898 290 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD 369 (626)
Q Consensus 290 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 369 (626)
.=.+.+-|..-...|....+.+..+.....++|.+...+.-.+ --..+...+-.++..+..+.+...++|.+.++++-
T Consensus 264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~ 341 (690)
T KOG1243|consen 264 RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS 341 (690)
T ss_pred ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence 3344566777777777777777777777777887766543222 01111222233444455556777899999999999
Q ss_pred CCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCc
Q 006898 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV 449 (626)
Q Consensus 370 ~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~ 449 (626)
.+..+|...+..+..+...+.++.+.+.|+|.+...+.|.+..+|...+..+..++..+++......++..+-++-.|..
T Consensus 342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~ 421 (690)
T KOG1243|consen 342 PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH 421 (690)
T ss_pred cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999988777889999988888999
Q ss_pred hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCch
Q 006898 450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPN 529 (626)
Q Consensus 450 ~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~ 529 (626)
..+|..+.-|++++...+........+...+..-+.|+-..-|.++..++..-.+.+.......+++|.+.-+..|++..
T Consensus 422 ~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~ 501 (690)
T KOG1243|consen 422 GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKT 501 (690)
T ss_pred CcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccc
Confidence 99999999999999888766543344444455568899889999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 006898 530 IKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 530 vR~~a~~~l~~i~~~~~~ 547 (626)
||..|..++.........
T Consensus 502 vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 502 VRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hhhHHHHHHHHHHhhhhh
Confidence 999999999988776543
No 70
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.8e-06 Score=87.67 Aligned_cols=458 Identities=12% Similarity=0.098 Sum_probs=260.6
Q ss_pred HHHHhcCccHHHHHHHHhhHHHHHHhhChHhh--hhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHH
Q 006898 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERT--RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91 (626)
Q Consensus 14 l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~--~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l 91 (626)
+...+++.|...|.+...+++++..... +.. -+.++.. ....++.+|..+.+.|-.+.. ......+-.++
T Consensus 69 ~tKlfQskd~~LRr~vYl~Ikels~ise-dviivtsslmkD---~t~~~d~yr~~AiR~L~~I~d----~~m~~~iery~ 140 (865)
T KOG1078|consen 69 ITKLFQSKDVSLRRMVYLAIKELSKISE-DVIIVTSSLMKD---MTGKEDLYRAAAIRALCSIID----GTMLQAIERYM 140 (865)
T ss_pred HHHHHhhcCHHHHHHHHHHHhhccccch-hhhhhhHHHHhh---ccCCCcchhHHHHHHHHhhcC----cchhHHHHHHH
Confidence 3345789999999999888888744221 111 1112211 234466778888888877655 22344555667
Q ss_pred hhhhcCcchHHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHH
Q 006898 92 ETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (626)
Q Consensus 92 ~~l~~~~~~~vR~~a~~~l~~i~~~~~~-~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ 170 (626)
...+.|+++.++.+|.-.= ...++. ......+..-+.....+++.-+++.+..++..+-.+.. -....++..+..
T Consensus 141 kqaivd~~~avSsaalvss---~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~dr-la~sklv~~~~~ 216 (865)
T KOG1078|consen 141 KQAIVDKNPAVSSAALVSS---YHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLVQKFTR 216 (865)
T ss_pred HhHeeccccccchHHHHHH---hhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHcc
Confidence 7777888888777653211 111111 12222233334444444444455566665555433211 111222222222
Q ss_pred -hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHh
Q 006898 171 -LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF 249 (626)
Q Consensus 171 -l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 249 (626)
.+.+ +--+-...+....+... .+.....+.+.+..++.+....|-..+..++..+....+.+ ....+..+..+
T Consensus 217 ~~~~~--~~A~~~lir~~~~~l~~--~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~--l~pavs~Lq~f 290 (865)
T KOG1078|consen 217 GSLKS--PLAVCMLIRIASELLKE--NQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE--LAPAVSVLQLF 290 (865)
T ss_pred ccccc--hhHHHHHHHHHHHHhhh--cccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh--cchHHHHHHHH
Confidence 1111 11111111111111111 12334567888889999888888888888887766555543 22266777888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhcc
Q 006898 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (626)
Q Consensus 250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 329 (626)
++.+....|.++...|..++...+.... ..-.-+..+..|.+..+..-|+.++-+-+. +.-...++..+.....
T Consensus 291 lssp~~~lRfaAvRtLnkvAm~~P~~v~--~cN~elE~lItd~NrsIat~AITtLLKTG~----e~sv~rLm~qI~~fv~ 364 (865)
T KOG1078|consen 291 LSSPKVALRFAAVRTLNKVAMKHPQAVT--VCNLDLESLITDSNRSIATLAITTLLKTGT----ESSVDRLMKQISSFVS 364 (865)
T ss_pred hcCcHHHHHHHHHHHHHHHHHhCCcccc--ccchhHHhhhcccccchhHHHHHHHHHhcc----hhHHHHHHHHHHHHHH
Confidence 9999999999999999999987664432 233445667788876666555555544333 2222444444444445
Q ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC-CCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC
Q 006898 330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408 (626)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~ 408 (626)
|-+...+..+.+++..++..++.. ...+++.+.++|++ ...+-+.+.+.++..+++.....+ +..+..+..+++|
T Consensus 365 disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK--e~~L~~LCefIED 440 (865)
T KOG1078|consen 365 DISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK--ERGLEHLCEFIED 440 (865)
T ss_pred hccccceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh--hHHHHHHHHHHHh
Confidence 544444555555666666555543 23456667777664 345667777777777766544333 3455666666655
Q ss_pred CChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCC
Q 006898 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH 488 (626)
Q Consensus 409 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~ 488 (626)
-. .+..+...+..+++........+..+-.+.....=.+..||.+|+.++.++. .+.......+...+..++.|++
T Consensus 441 ce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~D 516 (865)
T KOG1078|consen 441 CE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSD 516 (865)
T ss_pred cc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCch
Confidence 43 3344445555554433222111222222333333357889999999999987 4444456677777788899999
Q ss_pred hHHHHHHHHHHHHhc
Q 006898 489 YLYRMTILRAISLLA 503 (626)
Q Consensus 489 ~~vR~~a~~~l~~i~ 503 (626)
..+|..|..++..+-
T Consensus 517 devRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 517 DEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999988888775
No 71
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.4e-05 Score=80.22 Aligned_cols=448 Identities=14% Similarity=0.108 Sum_probs=234.7
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhc--CcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHH
Q 006898 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT--VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL 133 (626)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~--~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l 133 (626)
+.+.++....-|..+++++ |+.++.+.+.+-+.+++. +..+.||+.|+-|+-.+.+..+.-.-.+.+..-+..+
T Consensus 120 L~srn~~fv~LAL~~I~ni----G~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~L 195 (938)
T KOG1077|consen 120 LSSRNPTFVCLALHCIANI----GSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHL 195 (938)
T ss_pred hhcCCcHHHHHHHHHHHhh----ccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHH
Confidence 5556777777777888776 555555666665666543 3467799999999999998866533344567777788
Q ss_pred hcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchh-hhHHHHHHHhhc
Q 006898 134 AAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK-TDIMSIFEDLTQ 212 (626)
Q Consensus 134 ~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~l~~l~~ 212 (626)
++|....+-.++..++..+..+.++.+..-+...+..+.. .|+..... +....-..-+..+. -.++..+..+-.
T Consensus 196 L~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~r----iv~~~~t~-~qdYTyy~vP~PWL~vKl~rlLq~~p~ 270 (938)
T KOG1077|consen 196 LDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSR----IVVVVGTS-LQDYTYYFVPAPWLQVKLLRLLQIYPT 270 (938)
T ss_pred hCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHH----HHhhcccc-hhhceeecCCChHHHHHHHHHHHhCCC
Confidence 8888888888888899888888887665544433332210 00000000 00000000011111 123333333333
Q ss_pred CCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCC
Q 006898 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRD 291 (626)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d 291 (626)
-+|+.+|..-.+++..+.....+......+. ...+..+...-.-.++.++..+ ......+..+-+++.+
T Consensus 271 ~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq----------~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~ 340 (938)
T KOG1077|consen 271 PEDPSTRARLNEVLERILNKAQEPPKSKKVQ----------HSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSH 340 (938)
T ss_pred CCCchHHHHHHHHHHHHHhccccCccccchH----------hhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhc
Confidence 4566778777777777665544211000000 0111222211112223333222 2223445555667778
Q ss_pred ChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCC
Q 006898 292 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE 370 (626)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 370 (626)
.+.++|--+++.+..++..-......+.-...+...++ +++..+|+-+...+-.++..- ..+.++.-+++.+...
T Consensus 341 rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~----Nak~IV~elLqYL~tA 416 (938)
T KOG1077|consen 341 RETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS----NAKQIVAELLQYLETA 416 (938)
T ss_pred ccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh----hHHHHHHHHHHHHhhc
Confidence 88889998888888887753322222222444444444 888999999988887776432 3446677777778778
Q ss_pred CHHHHHHHHHhhHHHHhhhchh--hHHhhHHHHHHHHhcC----CChHHHHHHHHHHHHHHHh-hChhhHHHHHHHHHHH
Q 006898 371 FPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQ-LGVGFFDDKLGALCMQ 443 (626)
Q Consensus 371 ~~~vr~~a~~~L~~~~~~~~~~--~~~~~i~~~l~~~~~~----~~~~~r~~~~~~l~~l~~~-~~~~~~~~~l~p~l~~ 443 (626)
++.+|+..+.-.+-+.+.+..+ |+.+.++..+ ++..| +-|. | +.+. ...+....+-...++.
T Consensus 417 d~sireeivlKvAILaEKyAtDy~WyVdviLqLi-riagd~vsdeVW~-R---------vvQiVvNnedlq~yaak~~fe 485 (938)
T KOG1077|consen 417 DYSIREEIVLKVAILAEKYATDYSWYVDVILQLI-RIAGDYVSDEVWY-R---------VVQIVVNNEDLQGYAAKRLFE 485 (938)
T ss_pred chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH-HHhcccccHHHHH-H---------hheeEecchhhhHHHHHHHHH
Confidence 8999998888877777766544 4433333322 22222 1121 1 1110 0111111111111222
Q ss_pred HhcCC--chHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHH
Q 006898 444 WLQDK--VYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 519 (626)
Q Consensus 444 ~l~d~--~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l 519 (626)
.++.+ ....-..+.-.||.+...+..+ ......+..+-+-+.--+...|...+...-.++...+ + ....+...+
T Consensus 486 ~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P-E-i~~~v~~vF 563 (938)
T KOG1077|consen 486 YLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP-E-IKSNVQKVF 563 (938)
T ss_pred HHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh-h-hhHHHHHHH
Confidence 22211 1222233333444443332211 0112223333333444456667666666666655432 2 344555566
Q ss_pred hhhCCCCCchHHHHHHHHHH
Q 006898 520 INASKDRVPNIKFNVAKVLQ 539 (626)
Q Consensus 520 ~~~l~d~~~~vR~~a~~~l~ 539 (626)
....+-.+.++++.|++-|.
T Consensus 564 q~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 564 QLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred HhhcccCCHHHHHHHHHHHH
Confidence 66666677788777776654
No 72
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.02 E-value=4.9e-08 Score=90.63 Aligned_cols=183 Identities=20% Similarity=0.245 Sum_probs=124.8
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHHhhChH----HH---HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH--HH
Q 006898 285 YVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--AT 355 (626)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~---~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~ 355 (626)
|...-.+.+|+.|..++..+..++..-... .+ ...+++.+...+.|....|-..++.++..++..++.. .+
T Consensus 12 l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~ 91 (228)
T PF12348_consen 12 LEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY 91 (228)
T ss_dssp HHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 333345666777777777777766644111 11 1223345555666667778888889999998888764 35
Q ss_pred HHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhH-HHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hh
Q 006898 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL-LPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VG 431 (626)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i-~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~ 431 (626)
.+.++|.++..+.|....+|..|..+|..+++..+.. ..+ .+.+....+++++.+|..+++++..+....+ ..
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 6789999999999999999999999999999887611 233 7777888899999999999999999988877 22
Q ss_pred h----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 432 F----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 432 ~----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
. ..+.+.+.+..++.|++++||..|-.++..+...+|..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 1 23568999999999999999999999999999888765
No 73
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=6.7e-05 Score=80.38 Aligned_cols=477 Identities=17% Similarity=0.126 Sum_probs=269.7
Q ss_pred HHHhhHHHHHHhhChHhhhhhhcccccc---cc-CCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcchHHH
Q 006898 28 NSIRRLSTIARALGEERTRKELIPFLSE---NN-DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVR 103 (626)
Q Consensus 28 ~a~~~l~~i~~~~~~~~~~~~l~~~l~~---~~-~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR 103 (626)
++++.+..+...+|+ ....++.|.|.. +. +++..-+...-+++|..+..+| |+..-.++|+=. ..+.....|
T Consensus 369 ~ilqi~s~~fek~G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmG-Pe~vL~~lpLnl--~~~s~~~~R 444 (1176)
T KOG1248|consen 369 FILQILSALFEKCGE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMG-PERVLTILPLNL--HAESLSFTR 444 (1176)
T ss_pred HHHHHHHHHHHHhhh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhC-HHHHHHHcchhc--cccccccch
Confidence 345555555555664 233455555544 11 2222334455556666555555 333333344311 112222223
Q ss_pred HHHHHHHHHHHhhcChhhHHHhHHHHHHHHhc------CCcc---chhHHHhhHhHHh---cCCCCh--HHHHHHHHHHH
Q 006898 104 DKAVESLCRIGSQMRESDLVDWYIPLVKRLAA------GEWF---TARVSACGLFHIA---YPSAPD--ILKTELRSIYT 169 (626)
Q Consensus 104 ~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~------~~~~---~~r~~a~~~l~~~---~~~~~~--~~~~~l~~~l~ 169 (626)
.=-.-.|..-...-+-..+.++++|+...+.. .... ..+....++.+.+ +..-.+ +....+.+.+.
T Consensus 445 sWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~ 524 (1176)
T KOG1248|consen 445 SWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILG 524 (1176)
T ss_pred hHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHH
Confidence 21122222211221223445567776654421 1111 1233344444333 222111 34567777777
Q ss_pred HhcCCCCHHHHHHHHHhHHHHHHhhCcc-----------chhhhHHHHHHHhhcCCch------hHHHHHHHHHHHhhcc
Q 006898 170 QLCQDDMPMVRRSAASNLGKFAATVEPA-----------HLKTDIMSIFEDLTQDDQD------SVRLLAVEGCAALGKL 232 (626)
Q Consensus 170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~-----------~~~~~ll~~l~~l~~d~~~------~vr~~a~~~l~~l~~~ 232 (626)
..+.-. +..|..++.+|..+++...+. .+...++|.+.+..+.... ..|..-+.......-+
T Consensus 525 ~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~ 603 (1176)
T KOG1248|consen 525 AALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFT 603 (1176)
T ss_pred HHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhh
Confidence 666554 499999999999998875221 1223466666666543322 3344334333311111
Q ss_pred cCchhhhhhhHHHHHHhcCCCCHHH----HHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHH
Q 006898 233 LEPQDCVAHILPVIVNFSQDKSWRV----RYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308 (626)
Q Consensus 233 ~~~~~~~~~i~~~l~~~~~d~~~~v----R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 308 (626)
..+.+....+...+.....+.+..+ +.+....+..++....... ...+..+.-..-+..+..+|..+...|..++
T Consensus 604 ~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~ 682 (1176)
T KOG1248|consen 604 VTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAYRLLEELS 682 (1176)
T ss_pred cccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHHHHHHHHh
Confidence 1122233444444545555544333 2333333333333322221 1222222222334446789999999999988
Q ss_pred HhhChHH----HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH--HHHhHHHHHHHhhcCCCHHHHHHHHHhh
Q 006898 309 RILNPEL----AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (626)
Q Consensus 309 ~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~L 382 (626)
.....+. ....+...+..-.++.....|...+.++..+.+..+.+. +....+|-++-.+++.+..-|..+..+|
T Consensus 683 ~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL 762 (1176)
T KOG1248|consen 683 SSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALL 762 (1176)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHH
Confidence 8632222 234455555555666777888899999999988887433 3445555555555999999999999999
Q ss_pred HHHH--hh---hchhh---HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchH
Q 006898 383 DQVN--QV---IGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYS 451 (626)
Q Consensus 383 ~~~~--~~---~~~~~---~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~ 451 (626)
-.++ +. .|.+. ..+..++.+...+-....+++..-+-++..+...++ ...+.+.++..+..++..+...
T Consensus 763 ~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sre 842 (1176)
T KOG1248|consen 763 VFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSRE 842 (1176)
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHH
Confidence 8887 22 23332 224455555544444455555555666666665443 3344566777788889999999
Q ss_pred HHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH
Q 006898 452 IRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (626)
Q Consensus 452 VR~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~ 510 (626)
++.+|+..+..++..+.... ..+.++|.+..+..|.+..+|...-..+..+++.+|.+.
T Consensus 843 I~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 843 IAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHH
Confidence 99999999999999887653 346789999999999999999999999999999999764
No 74
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=5.4e-06 Score=84.72 Aligned_cols=521 Identities=16% Similarity=0.133 Sum_probs=268.2
Q ss_pred cCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccc-cC-CchHHHHHHHHHHhcccccc----CCc------chhhc
Q 006898 19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-ND-DDDEVLLAMAEELGVFIPYV----GGV------EHAHV 86 (626)
Q Consensus 19 ~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~-~~-~~~~vr~~~~~~l~~~~~~~----~~~------~~~~~ 86 (626)
-++|+..|..|-++|... . .+ ...-+.+|.-+ ++ -++.+|.+++..+.++++.- ++. ...+.
T Consensus 15 l~pdps~rk~aEr~L~~~-e---~q--~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ 88 (960)
T KOG1992|consen 15 LSPDPSVRKPAERALRSL-E---GQ--QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQ 88 (960)
T ss_pred CCCCCccCchHHHHHHHh-c---cC--CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHH
Confidence 367888999888888775 1 11 12222222221 22 27788999998888877731 111 01233
Q ss_pred chHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH-----HH
Q 006898 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LK 161 (626)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~ 161 (626)
+-.++-.+.-+....+...-.+++..+++.-=|+ -++.++|-+..-.+..+..+-.++...-..++.+...+ -+
T Consensus 89 ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~-kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~ 167 (960)
T KOG1992|consen 89 IKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPD-KWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALW 167 (960)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhccccch-hhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 3334444444444557777777777777643333 35566666655555555555556666666677766432 12
Q ss_pred HHHH-----------HHHHH---hc--CCCCHHHHHHHHHhHHHHHHhh---C----cc---chhhhHHHHHHHhhcC--
Q 006898 162 TELR-----------SIYTQ---LC--QDDMPMVRRSAASNLGKFAATV---E----PA---HLKTDIMSIFEDLTQD-- 213 (626)
Q Consensus 162 ~~l~-----------~~l~~---l~--~d~~~~vR~~a~~~l~~l~~~~---~----~~---~~~~~ll~~l~~l~~d-- 213 (626)
.+|. .++.+ ++ .+++...-+.....+--+++.+ . ++ +..+..++.+.+++.-
T Consensus 168 ~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~ 247 (960)
T KOG1992|consen 168 LEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDN 247 (960)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccC
Confidence 2211 12221 11 1111111011111111111111 1 11 2233455666666541
Q ss_pred ------C-c----hhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHH-----HHHHHHHHHHHHHhC--
Q 006898 214 ------D-Q----DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVR-----YMVANQLYELCEAVG-- 273 (626)
Q Consensus 214 ------~-~----~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR-----~~a~~~l~~l~~~~~-- 273 (626)
+ + ..+|...++.+.-.+....+ ..+.+.++...-.++.+.++.+| ..+.+.|..+++.-.
T Consensus 248 p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~ 327 (960)
T KOG1992|consen 248 PLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYA 327 (960)
T ss_pred cccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 1 1 13455555555444444333 12333344333344433333222 222333333332110
Q ss_pred ---------------------------CCccccchHHHHHHhcCCChHH-HHHHHHHhHHHHHHhhChHH---HHHhhHH
Q 006898 274 ---------------------------PEPTRMDLVPAYVRLLRDNEAE-VRIAAAGKVTKFCRILNPEL---AIQHILP 322 (626)
Q Consensus 274 ---------------------------~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~---~~~~l~~ 322 (626)
.+.+.+.-+.++..-++..|.+ -|++|+..+..+++.+.... +...+-.
T Consensus 328 ~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~ 407 (960)
T KOG1992|consen 328 ELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQR 407 (960)
T ss_pred hhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 0111122344444444444433 36678888888888774331 1122222
Q ss_pred HHHHhccC--CCHHHHHHHHHHHHhhhhhh-----c----------HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q 006898 323 CVKELSSD--SSQHVRSALASVIMGMAPLL-----G----------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (626)
Q Consensus 323 ~l~~l~~d--~~~~vr~~~~~~l~~l~~~~-----~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~ 385 (626)
.+.+..++ .+|.-+..++..+..++..- | .+++...+.|.+.+-=..+.|-++..+++-+-.+
T Consensus 408 ~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~F 487 (960)
T KOG1992|consen 408 LLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTF 487 (960)
T ss_pred HHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeee
Confidence 23333444 56888887777766665321 1 2334555555554433345677888888877777
Q ss_pred HhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh--------hhHHHHHHHHHHHH---hcCCchHHHH
Q 006898 386 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--------GFFDDKLGALCMQW---LQDKVYSIRD 454 (626)
Q Consensus 386 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--------~~~~~~l~p~l~~~---l~d~~~~VR~ 454 (626)
-+.+|++.+ -.++|.+.+.++.++.-+..-+..++..+....+. ....+.+.+.+..+ ++-+...--+
T Consensus 488 R~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~Ene 566 (960)
T KOG1992|consen 488 RNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENE 566 (960)
T ss_pred cccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccH
Confidence 777887766 45889999999999988888888888887654433 22333333333333 3222222222
Q ss_pred HHHHHHHHHHHHhChHH------HhhhhHHHHHhhhcCC-ChHHHHHHHHHHHHhccccCh------HHhhhcHHHHHhh
Q 006898 455 AAANNLKRLAEEFGPEW------AMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGS------EITCSRLLPVVIN 521 (626)
Q Consensus 455 ~a~~~l~~l~~~~~~~~------~~~~il~~l~~~l~~~-~~~vR~~a~~~l~~i~~~~~~------~~~~~~~l~~l~~ 521 (626)
...+++-.+........ ....+...+.+..++| ++..-....+.++.+....+. ..+...++|.+..
T Consensus 567 ylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~ 646 (960)
T KOG1992|consen 567 YLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQT 646 (960)
T ss_pred HHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 33333333333222211 1223333344445555 566667777777776654322 2366788898888
Q ss_pred hCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 522 ASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 522 ~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
.+..+..+.--.+.+.++.+.+..++
T Consensus 647 Il~eDI~EfiPYvfQlla~lve~~~~ 672 (960)
T KOG1992|consen 647 ILSEDIQEFIPYVFQLLAVLVEHSSG 672 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88877777777888888888877655
No 75
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=5.9e-06 Score=83.53 Aligned_cols=429 Identities=13% Similarity=0.153 Sum_probs=219.8
Q ss_pred cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcch
Q 006898 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (626)
Q Consensus 10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~ 88 (626)
.-..+.+.|.++|...+.+|++.+-.. .+..+...+-++..+.- +...+-++.+..---+.-+=+.-++.+..++++
T Consensus 21 ~~~~ik~~Lek~~~~~KIeamK~ii~~--mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMI 98 (948)
T KOG1058|consen 21 SEDEIKEKLEKGDDEVKIEAMKKIIAL--MLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMI 98 (948)
T ss_pred chHHHHHHHhcCChHHHHHHHHHHHHH--HHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHH
Confidence 345788899999999999998877654 22223333333333332 234444444433322222212222122233322
Q ss_pred H---HHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHH
Q 006898 89 P---PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELR 165 (626)
Q Consensus 89 ~---~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~ 165 (626)
= .+.+=+++|++-+|-...+-+.++ . .++..+.++
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRFLckL----k--------------------------------------E~ELlepl~ 136 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRFLCKL----K--------------------------------------EPELLEPLM 136 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhhhhhc----C--------------------------------------cHHHhhhhH
Confidence 1 223333445555554333222211 1 123455667
Q ss_pred HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhH
Q 006898 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243 (626)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 243 (626)
|.+..++++.++.||+.|.-++..+-..... +. .++++..+ +..+.++..+..|+-.|...- + +..+
T Consensus 137 p~IracleHrhsYVRrNAilaifsIyk~~~~L~pD-apeLi~~f--L~~e~DpsCkRNAFi~L~~~D----~----ErAl 205 (948)
T KOG1058|consen 137 PSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPD-APELIESF--LLTEQDPSCKRNAFLMLFTTD----P----ERAL 205 (948)
T ss_pred HHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCC-hHHHHHHH--HHhccCchhHHHHHHHHHhcC----H----HHHH
Confidence 7777888888888999888888777664211 01 11222221 234556677666665554321 1 1222
Q ss_pred HHHHHhcC---CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhh
Q 006898 244 PVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320 (626)
Q Consensus 244 ~~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 320 (626)
.++...+. +-+.......++.+...+..-+ ......+..+..++..+++.|+-.|+.++..+.. .+..+ +.-
T Consensus 206 ~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p--~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~--~p~al-k~A 280 (948)
T KOG1058|consen 206 NYLLSNIDQIPSFNDSLQLVIVELIRKVCLANP--AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN--DPTAL-KAA 280 (948)
T ss_pred HHHHhhHhhccCccHHHHHHHHHHHHHHHhcCH--HHhhHHHHHHHHHHhcCCchhhhhhcceEEEccC--CHHHH-HHH
Confidence 22222211 1123334444444444443111 1123455666667776677777777666655443 11111 111
Q ss_pred HHHHHHh-ccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHH
Q 006898 321 LPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (626)
Q Consensus 321 ~~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~ 399 (626)
...+..+ .+.++-+++-....-+..+.. +.+...+.++--++..|..++-+||..++.-.-.+......+.+.+.+-
T Consensus 281 a~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lk 358 (948)
T KOG1058|consen 281 ASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLK 358 (948)
T ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHH
Confidence 1112222 222333444444444444431 1222344444456677888999999988876555554433322212111
Q ss_pred HHHHHH---hcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhh
Q 006898 400 PAIVEL---AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 476 (626)
Q Consensus 400 ~~l~~~---~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i 476 (626)
..+.+- -.+++...|...++.+...+-.+. .....++|.++..+.|.+..--......+...++.+.. ....+
T Consensus 359 ke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--Lr~~i 434 (948)
T KOG1058|consen 359 KEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--LRASI 434 (948)
T ss_pred HHHHhccccccccchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch--HHHHH
Confidence 222221 134567789999999888775543 34567999999999999987666666666666666543 34445
Q ss_pred HHHHHhhhcC-CChHHHHHHHHHHHHhcc
Q 006898 477 TPQVLEMINN-PHYLYRMTILRAISLLAP 504 (626)
Q Consensus 477 l~~l~~~l~~-~~~~vR~~a~~~l~~i~~ 504 (626)
+..+.+.+.. ....+-.++++.+|.-++
T Consensus 435 i~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 435 IEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 5555554322 445555666666665544
No 76
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.94 E-value=4e-05 Score=80.03 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=120.9
Q ss_pred hcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccc-cccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhc
Q 006898 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS-ENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT 96 (626)
Q Consensus 18 l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~-~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 96 (626)
+.|.+...|..|++.+-.. ...|.+ ...+.|-+. .+...|.|+++.+-.-+..+++.- +...-..++.+.+=++
T Consensus 28 l~s~n~~~kidAmK~iIa~-M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~--P~~~lLavNti~kDl~ 102 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQ-MSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK--PELALLAVNTIQKDLQ 102 (757)
T ss_pred ccccChHHHHHHHHHHHHH-HhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHhhcc
Confidence 6677777888888766654 344544 344444443 355778888888877776666632 2222233345566668
Q ss_pred CcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHH-HHHHHHHhcCCC
Q 006898 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE-LRSIYTQLCQDD 175 (626)
Q Consensus 97 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~-l~~~l~~l~~d~ 175 (626)
|+++.+|-.|++.++.+ +...+.+.+++-+.++.+|+++.||..|+-++..++..-...+.+. ....+..++.|+
T Consensus 103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADS 178 (757)
T ss_pred CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCC
Confidence 89999999999888765 4456677788889999999999999999999999987666555555 677777888999
Q ss_pred CHHHHHHHHHhHHHHHHh
Q 006898 176 MPMVRRSAASNLGKFAAT 193 (626)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~ 193 (626)
+|.|-.+|..++..+-..
T Consensus 179 dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 179 DPIVIANALASLAEIDPE 196 (757)
T ss_pred CchHHHHHHHHHHHhchh
Confidence 999999888888777554
No 77
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.90 E-value=9.8e-06 Score=84.43 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhh
Q 006898 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (626)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (626)
...+.+-+.+.....+.++|+-.-..+..+++..+... -..++.+.+-++|+++.+|..|++.++.+ +...+.+
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~ 126 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLG 126 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHH
Confidence 45566666666667889999999999999888765322 23577888889999999999999999764 3446788
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 006898 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310 (626)
Q Consensus 241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 310 (626)
.+++.++++++|+++.||+.|+-++..+-+. +++...+. ....+..++.|++|.|..+|+.++..+...
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 8999999999999999999999999988754 22333343 667777888999999999999999887664
No 78
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=0.00028 Score=74.29 Aligned_cols=438 Identities=14% Similarity=0.066 Sum_probs=239.9
Q ss_pred cCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccccc-CC-chHHHHHHHHHHhccccc-c------CCc-----chh
Q 006898 19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DD-DDEVLLAMAEELGVFIPY-V------GGV-----EHA 84 (626)
Q Consensus 19 ~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~-~~-~~~vr~~~~~~l~~~~~~-~------~~~-----~~~ 84 (626)
-+.|++.|..|-+-|.++-+.- ..+.-.|.-+. |. +-.||.+++--+.+.+.+ = |.+ +-.
T Consensus 14 ~d~d~~~R~~AE~~L~q~~K~p------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk 87 (1010)
T KOG1991|consen 14 IDSDAKERKAAEQQLNQLEKQP------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDK 87 (1010)
T ss_pred cCCChHHHHHHHHHHHHhhcCC------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHH
Confidence 3667999999999988873322 22222222222 33 335798888877765431 0 101 111
Q ss_pred hcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCC----CCh--
Q 006898 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS----APD-- 158 (626)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~----~~~-- 158 (626)
..+-..+...+......+|-.-..++..|...=-| ..++.+++.+..++++.+...-..+.-++..++.. ..+
T Consensus 88 ~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR 166 (1010)
T KOG1991|consen 88 AVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEER 166 (1010)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 22222222222333666888888888777665444 34567889999999888766666777776665432 111
Q ss_pred ----H----HHHHHHHHHHHhcCCCCH---HHHHHHHHhHHHHHHhhCc-c----chhhhHHHHHHHhhcC---------
Q 006898 159 ----I----LKTELRSIYTQLCQDDMP---MVRRSAASNLGKFAATVEP-A----HLKTDIMSIFEDLTQD--------- 213 (626)
Q Consensus 159 ----~----~~~~l~~~l~~l~~d~~~---~vR~~a~~~l~~l~~~~~~-~----~~~~~ll~~l~~l~~d--------- 213 (626)
. ..+.++..+..++.+++. ...+..++.+..++..--| + ......+..+...++-
T Consensus 167 ~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~ 246 (1010)
T KOG1991|consen 167 QPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSL 246 (1010)
T ss_pred ccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccC
Confidence 1 224444555556666554 3455555555555443222 1 2222334444444432
Q ss_pred --------CchhHHHHHHHHHHHhhcccCchh----------------hhhhhHHHHHHhc---CCC---CHHHHHHHHH
Q 006898 214 --------DQDSVRLLAVEGCAALGKLLEPQD----------------CVAHILPVIVNFS---QDK---SWRVRYMVAN 263 (626)
Q Consensus 214 --------~~~~vr~~a~~~l~~l~~~~~~~~----------------~~~~i~~~l~~~~---~d~---~~~vR~~a~~ 263 (626)
+-|.+++=|+..+.++.+..+... +...++..+.+.+ ... +++|-..+..
T Consensus 247 d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~ 326 (1010)
T KOG1991|consen 247 DPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLN 326 (1010)
T ss_pred ChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 123466778999999888776521 1111222221111 111 2233333333
Q ss_pred HHHHHHHHhCCCccccchHHHHHHhc----------C---------CChHHHH-------------HHHHHhHHHHHHhh
Q 006898 264 QLYELCEAVGPEPTRMDLVPAYVRLL----------R---------DNEAEVR-------------IAAAGKVTKFCRIL 311 (626)
Q Consensus 264 ~l~~l~~~~~~~~~~~~l~~~l~~~l----------~---------d~~~~vr-------------~~a~~~l~~l~~~~ 311 (626)
.+.... ....+...+-|.+..++ + |+...+| .+|...+..++..-
T Consensus 327 fl~~~V---s~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR 403 (1010)
T KOG1991|consen 327 FLEQCV---SHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKR 403 (1010)
T ss_pred HHHHhc---cHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhc
Confidence 332221 11111122223222211 2 2223343 45666666666666
Q ss_pred ChHHHHHhhHHHHHHhcc--------CCCHHHHHHHHHHHHhhhhhhcHH-----HHHHhHHHHHHHhhcCCCHHHHHHH
Q 006898 312 NPELAIQHILPCVKELSS--------DSSQHVRSALASVIMGMAPLLGKD-----ATIEQLLPIFLSLLKDEFPDVRLNI 378 (626)
Q Consensus 312 ~~~~~~~~l~~~l~~l~~--------d~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a 378 (626)
|++.+ +.+++.+.+.++ ..+++-+..+...++.++..+.+. ....-++++++..++++.--.|..|
T Consensus 404 ~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrara 482 (1010)
T KOG1991|consen 404 GKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARA 482 (1010)
T ss_pred chhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHH
Confidence 66554 555666555443 345677788999999998766432 2223467788888899999999999
Q ss_pred HHhhHHHH-hhhchhhHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHH---HhcCCchH
Q 006898 379 ISKLDQVN-QVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQ---WLQDKVYS 451 (626)
Q Consensus 379 ~~~L~~~~-~~~~~~~~~~~i~~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~p~l~~---~l~d~~~~ 451 (626)
+..++.++ ..+........++....+.+. |.+-.+|..+.-++..+...... ..+..++-|++.. +.++-+.+
T Consensus 483 c~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End 562 (1010)
T KOG1991|consen 483 CWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND 562 (1010)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh
Confidence 99999998 445555545667777777776 78889999999999998765542 2344444444444 33333322
Q ss_pred HHHHHHHHHHHHHHHhChH
Q 006898 452 IRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 452 VR~~a~~~l~~l~~~~~~~ 470 (626)
. -..++..++..++.+
T Consensus 563 ~---Lt~vme~iV~~fseE 578 (1010)
T KOG1991|consen 563 D---LTNVMEKIVCKFSEE 578 (1010)
T ss_pred H---HHHHHHHHHHHHHHh
Confidence 2 233445555555543
No 79
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.82 E-value=1.7e-05 Score=80.37 Aligned_cols=199 Identities=16% Similarity=0.155 Sum_probs=144.2
Q ss_pred HHHHHHHhh-cCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhh--ChhhHH
Q 006898 359 LLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQL--GVGFFD 434 (626)
Q Consensus 359 l~~~l~~~l-~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~--~~~~~~ 434 (626)
++..+.... +..++..|..+.+.++.+.+.+..+...+.++..+.... .......|..+++.+..+.+++ ......
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 555555543 455699999999999999888755544455555555544 4556677788888887777765 112223
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---------------HHHhhhhHHHHHhhhcCCChHHHHHHHHHH
Q 006898 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---------------EWAMQHITPQVLEMINNPHYLYRMTILRAI 499 (626)
Q Consensus 435 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---------------~~~~~~il~~l~~~l~~~~~~vR~~a~~~l 499 (626)
..+...+..++.| +.+...++++++.+....+. ..+...++|.+.+.++..+...|...+.++
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 4567778888887 77889999999988765211 123467788888888887777999999999
Q ss_pred HHhccccChHHh---hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc--chhhhcccchHH
Q 006898 500 SLLAPVMGSEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVSTFSVSPFSF 559 (626)
Q Consensus 500 ~~i~~~~~~~~~---~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~--~~~~~~i~~~l~ 559 (626)
..+.++.+.+.+ .+.++|.+++.+.-+++++|..+..+|..+.....+ ..+.+.++|.|.
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 999999987654 567999999999999999999999999998876532 133345555444
No 80
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.79 E-value=0.00037 Score=72.56 Aligned_cols=561 Identities=13% Similarity=0.062 Sum_probs=305.7
Q ss_pred cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-cc--CCchHHHHHHHHHHhccccccCCcc----
Q 006898 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NN--DDDDEVLLAMAEELGVFIPYVGGVE---- 82 (626)
Q Consensus 10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~--~~~~~vr~~~~~~l~~~~~~~~~~~---- 82 (626)
.|..+++...|.|+..|..|-..+..... +. .+-..|.+ .. +..-..|+.+.-.|.+++..-..+.
T Consensus 5 ~ii~~L~~~ls~d~~vr~~AE~~l~qle~------~~-~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 5 AIIELLSGSLSADQNVRSQAETQLKQLEL------TE-GFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred HHHHHHHhhcCCChhHHHHHHHHHhcccc------ch-HHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 36678888999999999999988887622 11 25555555 22 2344667777777777655332211
Q ss_pred ---------hhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhc
Q 006898 83 ---------HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY 153 (626)
Q Consensus 83 ---------~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~ 153 (626)
....+-..+.+++-+++..+|.++..++..|+..--|+ -+++++|.+..++.+.+...-..|.+++..+.
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd-~WpElv~~i~~~l~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPD-EWPELVPFILKLLSSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCch-hhHHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 12233345555666889999999999999998865554 36778999999888877777778888988887
Q ss_pred CCCChHHHHH----HHHH---HHHhcCCCCHHHHHHHH--HhHHHHHHhhCc---------cchhhhHHHHHHHhhc---
Q 006898 154 PSAPDILKTE----LRSI---YTQLCQDDMPMVRRSAA--SNLGKFAATVEP---------AHLKTDIMSIFEDLTQ--- 212 (626)
Q Consensus 154 ~~~~~~~~~~----l~~~---l~~l~~d~~~~vR~~a~--~~l~~l~~~~~~---------~~~~~~ll~~l~~l~~--- 212 (626)
.....+.... .++. +.......+...|-.++ ..+........+ ..+...+++.+...+.
T Consensus 157 ~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l 236 (1005)
T KOG2274|consen 157 DEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPL 236 (1005)
T ss_pred HHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7664321111 1111 12223333444444444 222222221111 1222334444444332
Q ss_pred ---CC-chhHHHHHHHHHHHhhcccCc--hhhhhhhHH------------HHHHhc----------CCCCHH---HHHHH
Q 006898 213 ---DD-QDSVRLLAVEGCAALGKLLEP--QDCVAHILP------------VIVNFS----------QDKSWR---VRYMV 261 (626)
Q Consensus 213 ---d~-~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~------------~l~~~~----------~d~~~~---vR~~a 261 (626)
+. ++..|...++++..+.+.++. ..+....++ ++..-. .|.++. +-...
T Consensus 237 ~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~ 316 (1005)
T KOG2274|consen 237 QRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLV 316 (1005)
T ss_pred cccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhh
Confidence 22 346777778888877776654 111111111 111110 111111 11111
Q ss_pred HHH---HHHHHH------HhCCCccccchHHHHHHh------------------cCCCh--HHHHHHHHHhHHHHHHhhC
Q 006898 262 ANQ---LYELCE------AVGPEPTRMDLVPAYVRL------------------LRDNE--AEVRIAAAGKVTKFCRILN 312 (626)
Q Consensus 262 ~~~---l~~l~~------~~~~~~~~~~l~~~l~~~------------------l~d~~--~~vr~~a~~~l~~l~~~~~ 312 (626)
.+. +..+.. .+.+. ..++++.+... ..|++ ..+|..+...+-.+...++
T Consensus 317 i~i~eF~s~i~t~~~~~~ti~~~--l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~ 394 (1005)
T KOG2274|consen 317 IQIVEFLSTIVTNRFLSKTIKKN--LPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFG 394 (1005)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhcc
Confidence 111 111111 11110 11112221111 12222 2455555555555555555
Q ss_pred hHHH---HHhhHHHHH-----HhccCCC-HHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc-CCCHHHHHHHHHhh
Q 006898 313 PELA---IQHILPCVK-----ELSSDSS-QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKL 382 (626)
Q Consensus 313 ~~~~---~~~l~~~l~-----~l~~d~~-~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~L 382 (626)
.+.. .+..-..+. ...++++ |....+...+.......-..+.....+...+...+. ...|..-..+..++
T Consensus 395 ~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i 474 (1005)
T KOG2274|consen 395 NEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTI 474 (1005)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHH
Confidence 4321 111111111 1223333 455555444433333111112222233334444443 44566666888888
Q ss_pred HHHHhh--hchhhHHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 006898 383 DQVNQV--IGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (626)
Q Consensus 383 ~~~~~~--~~~~~~~~~i~~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~ 459 (626)
+.+... ..+..+ +.++..... +..+....+|..+++++...++.---..+.+.++..+.++..+...+|-...+++
T Consensus 475 ~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~ 553 (1005)
T KOG2274|consen 475 SKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEA 553 (1005)
T ss_pred HHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHH
Confidence 887766 333332 333333333 3456778899999888877663222223446677888888888888998888999
Q ss_pred HHHHHHHhChHH---HhhhhHHHHHhhh--cCCChHHHHHHHHHHHHhccccC-hHHhhhcHHHHHhhhCCCCC----ch
Q 006898 460 LKRLAEEFGPEW---AMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRV----PN 529 (626)
Q Consensus 460 l~~l~~~~~~~~---~~~~il~~l~~~l--~~~~~~vR~~a~~~l~~i~~~~~-~~~~~~~~l~~l~~~l~d~~----~~ 529 (626)
|...+.. .+++ ..+.+.|....++ ...++.+-..+-.++..+++... .....+..+|.+...+.-+. +.
T Consensus 554 Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~ 632 (1005)
T KOG2274|consen 554 LSSVVKL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAG 632 (1005)
T ss_pred HHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCch
Confidence 8888865 3322 3467788877754 23455666666666666655222 12356889999999887666 56
Q ss_pred HHHHHHHHHHHHHhhhccc---hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898 530 IKFNVAKVLQSLIPIVDQS---VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH 591 (626)
Q Consensus 530 vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~ 591 (626)
.-..++..|..+.+.-+++ ....+.+|.+..-.+...|.+.-. ++.++|..+-
T Consensus 633 l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ---------~~~EcLra~I 688 (1005)
T KOG2274|consen 633 LCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQ---------NATECLRALI 688 (1005)
T ss_pred hhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHH---------hHHHHHHHHH
Confidence 7778888888888776553 344567777772335555666666 7888887764
No 81
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1.3e-05 Score=76.97 Aligned_cols=292 Identities=14% Similarity=0.068 Sum_probs=176.3
Q ss_pred hhHHHHHHHHHHHhhcccCc-hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc----cccch--HHHHHHh
Q 006898 216 DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDL--VPAYVRL 288 (626)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l--~~~l~~~ 288 (626)
..+|..+++.+..++.+++- ..+.-.+.-.+.....+..+.+...++.++..+....+.+. ....+ -|....+
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~ 348 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMM 348 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHH
Confidence 35888999999999888875 33444455566667788999999999999998887766332 11111 1122222
Q ss_pred cC--------C-ChHHHHHHHHHhHHHHHHhh--ChHHHHHhhHHHHHHhccC-CCHHHHHHHHHHHHhhhhhhcH---H
Q 006898 289 LR--------D-NEAEVRIAAAGKVTKFCRIL--NPELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGK---D 353 (626)
Q Consensus 289 l~--------d-~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~~---~ 353 (626)
+. | ..+....++..++..++..- +-+.-.+...+.+.....| ++.-+|.++++.++.+.-.-+- .
T Consensus 349 l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~ 428 (728)
T KOG4535|consen 349 LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDV 428 (728)
T ss_pred ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhH
Confidence 21 1 11333444444444443311 1111113345555555554 4456788888877765433221 1
Q ss_pred HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch-----h----hHHhhHHHHHHHHhc---CCChHHHHHHHHHH
Q 006898 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-----D----LLSQSLLPAIVELAE---DRHWRVRLAIIEYI 421 (626)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~-----~----~~~~~i~~~l~~~~~---~~~~~~r~~~~~~l 421 (626)
.+.......+...+.|..-.+|..++.+++.+...+-. + .+....+..+..... -.+.++|..+++++
T Consensus 429 ~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraL 508 (728)
T KOG4535|consen 429 IFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRAL 508 (728)
T ss_pred HHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 23344556667778888889999999999998765421 1 122233334333322 34689999999999
Q ss_pred HHHHHhhChh--hHHHHHHHH-HHH----HhcCCchHHHHHHHHHHHHHHHHhC----hHHHhhhhHHHHHhhhc-CCCh
Q 006898 422 PLLASQLGVG--FFDDKLGAL-CMQ----WLQDKVYSIRDAAANNLKRLAEEFG----PEWAMQHITPQVLEMIN-NPHY 489 (626)
Q Consensus 422 ~~l~~~~~~~--~~~~~l~p~-l~~----~l~d~~~~VR~~a~~~l~~l~~~~~----~~~~~~~il~~l~~~l~-~~~~ 489 (626)
+.+.+.+.+- .....++.. ..+ .....+..||..++.+++++++.-. .......++|.+..++. ..|.
T Consensus 509 gnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NF 588 (728)
T KOG4535|consen 509 GNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNF 588 (728)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccc
Confidence 9988766421 001111111 111 1233467799999999999987521 11234678888888765 4799
Q ss_pred HHHHHHHHHHHHhccccC
Q 006898 490 LYRMTILRAISLLAPVMG 507 (626)
Q Consensus 490 ~vR~~a~~~l~~i~~~~~ 507 (626)
++|..|+.++..-.+..+
T Consensus 589 KVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 589 KVRIRAAAALSVPGKREQ 606 (728)
T ss_pred eEeehhhhhhcCCCCccc
Confidence 999999999987766444
No 82
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.73 E-value=2.1e-06 Score=90.98 Aligned_cols=195 Identities=13% Similarity=0.153 Sum_probs=160.7
Q ss_pred cHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc---hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Q 006898 351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (626)
Q Consensus 351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 427 (626)
.+....+.+-+.+...+.++++.-|..|++.+...++.-+ ...+...+...+.-...|.|..+-..++..+..+++.
T Consensus 246 ~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 246 PRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred chhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 4566777888888899999999999999999888776544 3333344444555556788999999999999999998
Q ss_pred hChhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc
Q 006898 428 LGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (626)
Q Consensus 428 ~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~ 505 (626)
++..+ +...+.|.++..+.|....+|.++..++..++.... ...+.+.+...+++.+++.|..+...+....+.
T Consensus 326 lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred cchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence 87654 346688999999999999999999999988887433 456888999999999999999999999988877
Q ss_pred cCh----HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccch
Q 006898 506 MGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 549 (626)
Q Consensus 506 ~~~----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~ 549 (626)
.++ ......+.|.+....+|.+.+||.+|..+++.+...+|...
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 662 23567899999999999999999999999999999998753
No 83
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.68 E-value=1.4e-05 Score=84.84 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=154.9
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--hH-HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH--
Q 006898 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-- 353 (626)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~-~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~-- 353 (626)
..+-+.+...+.+.+|.-|..|+..+...++.-+ .. .+...+...+.....|.|..|-..++..+..++..++..
T Consensus 252 ~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 252 SKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 4566777778889999999999999988887655 11 223445556666778999999999999999999887754
Q ss_pred HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh--
Q 006898 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-- 431 (626)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-- 431 (626)
.+.....|.++..++|..+.+|..+..++..++...+- ..+.+.+...+++.+++.|.....++.......++.
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l----~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL----SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 34556789999999999999999999999988875443 467888889999999999999999999988877732
Q ss_pred --hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 432 --FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 432 --~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
.....+.|.+....+|.+.+||.+|..+++.+...+|.+
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 234678999999999999999999999999999999876
No 84
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.00079 Score=68.22 Aligned_cols=437 Identities=12% Similarity=0.097 Sum_probs=216.7
Q ss_pred HHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHH
Q 006898 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91 (626)
Q Consensus 12 ~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l 91 (626)
+.+.+-|.|-|+..-.-|++.+++++..--.+....++ |-+.-..+..+-||+.++-++-.+.+..++-.....=..-+
T Consensus 114 n~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI-~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~ri 192 (938)
T KOG1077|consen 114 NSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDI-PKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRI 192 (938)
T ss_pred HHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhh-HHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHH
Confidence 44556678888888899999999885432112222222 33333455667899999988876655322211111122233
Q ss_pred hhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHh---c----C--C--ccc-----hhHHHhhHhHHhcCC
Q 006898 92 ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA---A----G--E--WFT-----ARVSACGLFHIAYPS 155 (626)
Q Consensus 92 ~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~---~----~--~--~~~-----~r~~a~~~l~~~~~~ 155 (626)
-.++.|.+-.|-.++..-+..+++..+++. ...+.+.+.++. . + + .+. -....++++...-.-
T Consensus 193 v~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~ 271 (938)
T KOG1077|consen 193 VHLLDDQHMGVVTAATSLIEALVKKNPESY-KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTP 271 (938)
T ss_pred HHHhCccccceeeehHHHHHHHHHcCCHHH-hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCC
Confidence 445566666677777777788888777632 222233332221 1 1 0 000 112233333332111
Q ss_pred CChHHHH---HHHHHHHHhcCCC--C-----HHHHHHHHHhHHHHHHhhCc-cchhhhHHHHHHHhhcCCchhHHHHHHH
Q 006898 156 APDILKT---ELRSIYTQLCQDD--M-----PMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVE 224 (626)
Q Consensus 156 ~~~~~~~---~l~~~l~~l~~d~--~-----~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~d~~~~vr~~a~~ 224 (626)
-+...+. ++++.++...+++ + ..++.+.+...-.++.+... +.........+-+++++.+..+|-.|++
T Consensus 272 ~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLE 351 (938)
T KOG1077|consen 272 EDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALE 351 (938)
T ss_pred CCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHH
Confidence 1112333 3333333333321 1 12333333334444444433 3344556667777888888899999999
Q ss_pred HHHHhhcccCc-hhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHH
Q 006898 225 GCAALGKLLEP-QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAG 302 (626)
Q Consensus 225 ~l~~l~~~~~~-~~~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 302 (626)
.+..++..-.. +....+ ...+...++ +++..+|+.++..|..++..-. .+.++.-+++.+...++.+|+..+-
T Consensus 352 sm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~IV~elLqYL~tAd~sireeivl 426 (938)
T KOG1077|consen 352 SMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQIVAELLQYLETADYSIREEIVL 426 (938)
T ss_pred HHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhh----HHHHHHHHHHHHhhcchHHHHHHHH
Confidence 88888766333 222223 333444444 7888899999999888876432 3456666666676678888888877
Q ss_pred hHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCC--CHHHHHHH
Q 006898 303 KVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE--FPDVRLNI 378 (626)
Q Consensus 303 ~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a 378 (626)
-.+.+++....+ .+...++..+.-..+--+..|-.-+++.+ ...+.........++..|..+ .+..-+.+
T Consensus 427 KvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiV------vNnedlq~yaak~~fe~Lq~~a~hE~mVKvg 500 (938)
T KOG1077|consen 427 KVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIV------VNNEDLQGYAAKRLFEYLQKPACHENMVKVG 500 (938)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeE------ecchhhhHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 777777754433 33333333322111111112111111100 011111111122222222211 11222222
Q ss_pred HHhhHHHHhhhchhh--HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHH
Q 006898 379 ISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAA 456 (626)
Q Consensus 379 ~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a 456 (626)
.--||+++..+..+. -....+..+.+-+..-+...|...+.....+...++ ...+.+...+....+-.+.++++.|
T Consensus 501 gyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P--Ei~~~v~~vFq~~~n~~D~ElQqRa 578 (938)
T KOG1077|consen 501 GYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP--EIKSNVQKVFQLYSNLIDVELQQRA 578 (938)
T ss_pred hhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh--hhhHHHHHHHHhhcccCCHHHHHHH
Confidence 233444444332211 011222333333333445566666666666555442 2334455555555555778888888
Q ss_pred HHHHHHH
Q 006898 457 ANNLKRL 463 (626)
Q Consensus 457 ~~~l~~l 463 (626)
++-+.-.
T Consensus 579 ~EYLql~ 585 (938)
T KOG1077|consen 579 VEYLQLS 585 (938)
T ss_pred HHHHHHH
Confidence 8776543
No 85
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.0004 Score=70.83 Aligned_cols=323 Identities=12% Similarity=0.138 Sum_probs=198.0
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 006898 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 284 (626)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~ 284 (626)
+.+.+-++++++.+|-..++.+..+ .+.+..+.++|.+...+++.+..||+.|+-++..+..... .. ..+.-..
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L-~pDapeL 175 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HL-IPDAPEL 175 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hh-cCChHHH
Confidence 4456668889999998888777543 3445677889999999999999999999999888876521 11 1121122
Q ss_pred HHH-hcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHH
Q 006898 285 YVR-LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363 (626)
Q Consensus 285 l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 363 (626)
+.. +..+.+|..++.|.-.|... +++...+.+...+.+ ..+-+......+.+.+...+..- .......+..+
T Consensus 176 i~~fL~~e~DpsCkRNAFi~L~~~----D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~--p~~~~~~i~~i 248 (948)
T KOG1058|consen 176 IESFLLTEQDPSCKRNAFLMLFTT----DPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLAN--PAEKARYIRCI 248 (948)
T ss_pred HHHHHHhccCchhHHHHHHHHHhc----CHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcC--HHHhhHHHHHH
Confidence 222 33577788888887655443 233222222222211 12233455555556555555421 22234567778
Q ss_pred HHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 006898 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442 (626)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~ 442 (626)
..+|...++.|+-.|+.++-.+... +.........+.+++ +.++-.++...+.-+..+.. .... ..+.+.--++
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS~~---p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~-~~~~-il~~l~mDvL 323 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLSND---PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA-LHEK-ILQGLIMDVL 323 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEccCC---HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh-hhHH-HHHHHHHHHH
Confidence 8888888899988887776655332 111122233344443 33445566666666666651 2222 2334444567
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh---hcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHH
Q 006898 443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM---INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 519 (626)
Q Consensus 443 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~---l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l 519 (626)
+.+..++-+||..+....-.++..-+-+....-+-..+.+. -.+.+...|+..++++..++-.++. +...+.|.+
T Consensus 324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l 401 (948)
T KOG1058|consen 324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL 401 (948)
T ss_pred HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence 88899999999999988777766544332222222222221 1345677899999999988765542 567889999
Q ss_pred hhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 520 INASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 520 ~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
+..+.|.++.--...+.-+.+.++.+++
T Consensus 402 l~fisD~N~~aas~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 402 LDFISDSNEAAASDVLMFVREAIEKFPN 429 (948)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHhCch
Confidence 9999999988777777777777776553
No 86
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.61 E-value=0.00015 Score=73.53 Aligned_cols=286 Identities=14% Similarity=0.127 Sum_probs=153.8
Q ss_pred chHHHHHHHHHHHHHHhhcChhh-------HHH-hHHHHHHHHhcCC-----c--cchhHHHhhHhHHhcCCCChHHHHH
Q 006898 99 ETCVRDKAVESLCRIGSQMRESD-------LVD-WYIPLVKRLAAGE-----W--FTARVSACGLFHIAYPSAPDILKTE 163 (626)
Q Consensus 99 ~~~vR~~a~~~l~~i~~~~~~~~-------~~~-~l~~~l~~l~~~~-----~--~~~r~~a~~~l~~~~~~~~~~~~~~ 163 (626)
+.......+.++..+.+...... ..+ .++|.+.+..... . +.+-..+..++..+..+++.+.+++
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45566677777777665442211 112 2566665544221 1 2333456677788888888876666
Q ss_pred HHHHHHHhcC----------CCC--HHHHHHHHHhHHHHHHhhCccch---hhhHHHHHHHhhc-CCchhHHHHHHHHHH
Q 006898 164 LRSIYTQLCQ----------DDM--PMVRRSAASNLGKFAATVEPAHL---KTDIMSIFEDLTQ-DDQDSVRLLAVEGCA 227 (626)
Q Consensus 164 l~~~l~~l~~----------d~~--~~vR~~a~~~l~~l~~~~~~~~~---~~~ll~~l~~l~~-d~~~~vr~~a~~~l~ 227 (626)
+...+..+.- +.+ +.........+..+...++++.. ...++..+..+.. .+++..|..+++.+.
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la 215 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA 215 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 6665555432 111 11222333334455555554332 2335555555543 345889999999999
Q ss_pred HhhcccCchhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHh--CCCccccchHHHHHHhcCCChHHHHHHHHHhH
Q 006898 228 ALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304 (626)
Q Consensus 228 ~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 304 (626)
.+...++.+...+.++..+.... .......|..+.+.+.-+.+.+ ........++..+..++.| +++...+++++
T Consensus 216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f 293 (415)
T PF12460_consen 216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF 293 (415)
T ss_pred HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence 99988776555555555554444 4455566777777776666643 2222234677888888887 67888888888
Q ss_pred HHHHHhhC---------------hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHH---HHhHHHHHHHh
Q 006898 305 TKFCRILN---------------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSL 366 (626)
Q Consensus 305 ~~l~~~~~---------------~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~ 366 (626)
+.+....+ .+.+...++|.+.+..++.+...|.....++..+.+..+.+.. .+.++|.+.+.
T Consensus 294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs 373 (415)
T PF12460_consen 294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS 373 (415)
T ss_pred hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 88765311 1122233444444443333333444444444444444333222 22344444444
Q ss_pred hcCCCHHHHHHHHHhhHHHH
Q 006898 367 LKDEFPDVRLNIISKLDQVN 386 (626)
Q Consensus 367 l~d~~~~vr~~a~~~L~~~~ 386 (626)
|.-++.+++.+++.++..+.
T Consensus 374 L~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 374 LSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred hCCCCHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 87
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.59 E-value=0.00071 Score=70.81 Aligned_cols=477 Identities=14% Similarity=0.091 Sum_probs=242.1
Q ss_pred chHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHH
Q 006898 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS 166 (626)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~ 166 (626)
+..++..-+-|+.+.||..|+..+..+.+...... ...++..+..-..|+-+.++.++...+..-..-++.+.+..
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~-~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt--- 548 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE-AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTT--- 548 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccch---
Confidence 44445555568889999999888887776554321 12233333333344446666666555554433333221110
Q ss_pred HHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhhcccCchhhhhhhHHH
Q 006898 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV 245 (626)
Q Consensus 167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~ 245 (626)
..+.+....+... =+.+... +..-+...++..+..-++ |+...|+..++..+.....++..+...+..+-+
T Consensus 549 ---~~l~~~~~ii~d~----~~~~~~~-ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~i 620 (1529)
T KOG0413|consen 549 ---DLLLDEQQIIQDF----KLKLMNK-GETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSI 620 (1529)
T ss_pred ---hhcCcchhhhhhc----chhhhhc-cccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHH
Confidence 1111211111111 1111111 111223345555555554 777889999999999888888876666677888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh-h--ChH--H----
Q 006898 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-L--NPE--L---- 315 (626)
Q Consensus 246 l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~--~~~--~---- 315 (626)
+..+|.|+-..||..++..|+.+...-+.-. .....+-.+..+++|.+..+.+.|...+.++..- + +.. .
T Consensus 621 Lq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~LL~ 700 (1529)
T KOG0413|consen 621 LQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTLLD 700 (1529)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHHHH
Confidence 9999999999999999999988765422211 1123445566677888888888888766555432 1 000 0
Q ss_pred ----------HHH--------------hhHHHHHHh----ccCCCHHHHHHHHHHHHhh--hh-hh-----cH-HH---H
Q 006898 316 ----------AIQ--------------HILPCVKEL----SSDSSQHVRSALASVIMGM--AP-LL-----GK-DA---T 355 (626)
Q Consensus 316 ----------~~~--------------~l~~~l~~l----~~d~~~~vr~~~~~~l~~l--~~-~~-----~~-~~---~ 355 (626)
++. ..+....+- ..++.|.+-..++-....+ +- .+ .. +. +
T Consensus 701 ~i~~~~~~s~yl~~~~h~w~~~~k~~~t~~d~~~~hsG~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~s~~~N~~~~ 780 (1529)
T KOG0413|consen 701 TIESVTNHSQYLMSTLHDWVREKKVKRTVMDSMKQHSGSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDLSRESNLVQY 780 (1529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccCcccCcchHHHHHHHHhcccccceeeecccccccchhhhHHHH
Confidence 000 000000000 0123454433322211110 00 00 00 11 1
Q ss_pred HHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHh---------------------h------------HHHHH
Q 006898 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ---------------------S------------LLPAI 402 (626)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~---------------------~------------i~~~l 402 (626)
..+++..+.++-+|-..+.+.....++..+++.-+..+..+ . +.+..
T Consensus 781 L~hI~~~i~~i~~~l~s~~vd~~~~a~K~~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~~ 860 (1529)
T KOG0413|consen 781 LIHIIENIKKIDDDLKSDLVDTLQGAFKDYCKHPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQSF 860 (1529)
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhHH
Confidence 22222222223334444555555555554444333111100 0 00111
Q ss_pred HHHhcCCChHH----HHHHHHHHHHHH--H--hhChhhHHHHHHHHHHHHh----cCC----------------------
Q 006898 403 VELAEDRHWRV----RLAIIEYIPLLA--S--QLGVGFFDDKLGALCMQWL----QDK---------------------- 448 (626)
Q Consensus 403 ~~~~~~~~~~~----r~~~~~~l~~l~--~--~~~~~~~~~~l~p~l~~~l----~d~---------------------- 448 (626)
..+-+...|.. ...++.+.-.++ . .+-+..-....++.+.... .|.
T Consensus 861 ~~~~~~~~~~~~s~~~~~~l~~~y~v~~~~~~ql~P~ar~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g 940 (1529)
T KOG0413|consen 861 EMFKDKDEWKRNSESQERLLCTAYNVAFSYSPQLVPHARLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEG 940 (1529)
T ss_pred hhhhhhHHHhhcchhHHHHHHHHhhccccccceeccchhccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccc
Confidence 00000001110 000111111111 0 0000000011222221111 121
Q ss_pred ---chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhc-CCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCC
Q 006898 449 ---VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK 524 (626)
Q Consensus 449 ---~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~-~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~ 524 (626)
.+-||..+.-+++++|-..+. ...+.+|.+.+-+. .....+|.+.+-+++.++.... ...+..+|.+...+.
T Consensus 941 ~~~~~~vra~~vvTlakmcLah~~--LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--am~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 941 AMFSDKVRAVGVVTLAKMCLAHDR--LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--AMTDRYIPMIAASLC 1016 (1529)
T ss_pred cccchHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--HHHHHhhHHHHHHhc
Confidence 235788888999999876553 45678899887554 4567788888888887765332 245778999999999
Q ss_pred CCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHH
Q 006898 525 DRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYC 590 (626)
Q Consensus 525 d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~ 590 (626)
|+++-||..+.-.|.++.+.- --.|...++=-+. ..+-|.+++||. .|...++.+
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~-~vKw~G~Lf~Rf~-l~l~D~~edIr~---------~a~f~~~~v 1071 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG-IVKWNGELFIRFM-LALLDANEDIRN---------DAKFYISEV 1071 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhh-hhhcchhhHHHHH-HHHcccCHHHHH---------HHHHHHHHH
Confidence 999999999999999988652 2223333333333 345688999998 666655554
No 88
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.58 E-value=0.00028 Score=73.65 Aligned_cols=430 Identities=15% Similarity=0.165 Sum_probs=218.3
Q ss_pred HHhHHHHHHHHhc-CCccchhHHHhhHhHHhcCCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cch
Q 006898 123 VDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHL 199 (626)
Q Consensus 123 ~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~ 199 (626)
...++..+.+-.+ |+-..+|..+++.+.....+++.. ..+..+.+|..+|.|+-..||+.++.+|+.+...-+. -..
T Consensus 574 e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~ 653 (1529)
T KOG0413|consen 574 EKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSL 653 (1529)
T ss_pred HHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhh
Confidence 3445555554444 777889999999999888888765 4456688899999999999999999999998764332 123
Q ss_pred hhhHHHHHHHhhcCCchhHHHHHHHHHHHhh-cccCc-hhhhhhhHHHHHHhcCC--------CCHHH-HHHHHHHHHHH
Q 006898 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALG-KLLEP-QDCVAHILPVIVNFSQD--------KSWRV-RYMVANQLYEL 268 (626)
Q Consensus 200 ~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~-~~~~~-~~~~~~i~~~l~~~~~d--------~~~~v-R~~a~~~l~~l 268 (626)
....+..+..++.|.+..|...|...+..+. .++.. ....-.++..+....+. ..|.- ...-...+...
T Consensus 654 ~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~LL~~i~~~~~~s~yl~~~~h~w~~~~k~~~t~~d~~ 733 (1529)
T KOG0413|consen 654 SSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTLLDTIESVTNHSQYLMSTLHDWVREKKVKRTVMDSM 733 (1529)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhh
Confidence 3456667777788888888877777554432 22211 11111112211111110 00100 00001112222
Q ss_pred HHHhCCCcccc--chHHH-HHH---------hcC-------CChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhcc
Q 006898 269 CEAVGPEPTRM--DLVPA-YVR---------LLR-------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (626)
Q Consensus 269 ~~~~~~~~~~~--~l~~~-l~~---------~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 329 (626)
..+-|.+.... .+... +.+ ... ++....-......++.+.+.+....+ +.+...+..++.
T Consensus 734 ~~hsG~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~s~~~N~~~~L~hI~~~i~~i~~~l~s~~v-d~~~~a~K~~Ck 812 (1529)
T KOG0413|consen 734 KQHSGSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDLSRESNLVQYLIHIIENIKKIDDDLKSDLV-DTLQGAFKDYCK 812 (1529)
T ss_pred hcccCcccCcchHHHHHHHHhcccccceeeecccccccchhhhHHHHHHHHHHHHHhhhhcccHHHH-HHHHHHHHHHHc
Confidence 22222221100 00000 000 001 11111222223333333333333322 444455555444
Q ss_pred CCC----HHHHHHHHHHHHhhhhhhc--HHHHHHhH-------HHHHHHhhcCCC-----HHHHHHHHH-----hhHHHH
Q 006898 330 DSS----QHVRSALASVIMGMAPLLG--KDATIEQL-------LPIFLSLLKDEF-----PDVRLNIIS-----KLDQVN 386 (626)
Q Consensus 330 d~~----~~vr~~~~~~l~~l~~~~~--~~~~~~~l-------~~~l~~~l~d~~-----~~vr~~a~~-----~L~~~~ 386 (626)
.+. ..+-..+..+++..+..-. .++..+.+ +.....+++|.+ ..-...++. +++.+.
T Consensus 813 ~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~~~~~~~~~~~~~~s~~~~~~l~~~y~v~~~~~~ 892 (1529)
T KOG0413|consen 813 HPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQSFEMFKDKDEWKRNSESQERLLCTAYNVAFSYSP 892 (1529)
T ss_pred CCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhHHhhhhhhHHHhhcchhHHHHHHHHhhccccccc
Confidence 433 2333334444444432111 01111111 111122222211 111111111 112221
Q ss_pred hhhchhhHHhhHHHHHHHHhc----C-------------------------CChHHHHHHHHHHHHHHHhhChhhHHHHH
Q 006898 387 QVIGIDLLSQSLLPAIVELAE----D-------------------------RHWRVRLAIIEYIPLLASQLGVGFFDDKL 437 (626)
Q Consensus 387 ~~~~~~~~~~~i~~~l~~~~~----~-------------------------~~~~~r~~~~~~l~~l~~~~~~~~~~~~l 437 (626)
+..+.... .+.++.|.+... | ....+|..+.-.++.++- .........
T Consensus 893 ql~P~ar~-~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~vvTlakmcL--ah~~LaKr~ 969 (1529)
T KOG0413|consen 893 QLVPHARL-GKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVGVVTLAKMCL--AHDRLAKRL 969 (1529)
T ss_pred eeccchhc-cceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHHHHHHHHHHHHHh--hhhHHHHHH
Confidence 21111111 222222222110 0 123356666666666553 333455678
Q ss_pred HHHHHHHhc-CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHH
Q 006898 438 GALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL 516 (626)
Q Consensus 438 ~p~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l 516 (626)
+|.+.+-|+ .....+|...+-+++.+|..+.. ..+..+|.+...+.||+.-+|..++-.+.++.+. +--.+...++
T Consensus 970 ~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~-~~vKw~G~Lf 1046 (1529)
T KOG0413|consen 970 MPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVIVRRQTIILLARLLQF-GIVKWNGELF 1046 (1529)
T ss_pred HHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh-hhhhcchhhH
Confidence 888877664 45678999999999999987642 3477899999999999999999999999988752 1001223333
Q ss_pred HHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHH
Q 006898 517 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSF 559 (626)
Q Consensus 517 ~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~ 559 (626)
-.++..+-|.++++|..|--.++.+...-.+..+....+..+.
T Consensus 1047 ~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1047 IRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYII 1089 (1529)
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 3333345599999999999999998877555444444444443
No 89
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.57 E-value=4.1e-06 Score=84.99 Aligned_cols=238 Identities=17% Similarity=0.237 Sum_probs=169.1
Q ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc-CC
Q 006898 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR 409 (626)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~-~~ 409 (626)
.++.-+....+.|..+...++.......++|.+...+.+.. ..-...-.+-.+.+......+...++|.|...++ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 34455667777777777777777777788888877775431 0000111122233333444455678888888877 55
Q ss_pred ChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh-hcCCC
Q 006898 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPH 488 (626)
Q Consensus 410 ~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~-l~~~~ 488 (626)
+.+.+...++-+..+.+...++.+.+.++|.+...++|.+..++..++..+..+.+.+.-...++.++|.+..+ +++.+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 67788888888888888888999999999999999999999999999999999998888777888999999885 56678
Q ss_pred hHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh--ccchhhhcccchHHhhhccCC
Q 006898 489 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV--DQSVSTFSVSPFSFMLYLNVN 566 (626)
Q Consensus 489 ~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~--~~~~~~~~i~~~l~~~l~~d~ 566 (626)
..+|.+++-|++.+++.++.....+.++|.+.. .+-+++.+......+...+.-.. |.....+.++|.+. .+...+
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli-~ls~~~ 520 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLI-PLSVAP 520 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhh-hhhhcc
Confidence 889999999999999877776667777766554 44556777666666665544332 23555667888777 665444
Q ss_pred Cccccc
Q 006898 567 NFNVGF 572 (626)
Q Consensus 567 d~~vr~ 572 (626)
.-.+..
T Consensus 521 ~L~~~Q 526 (700)
T KOG2137|consen 521 SLNGEQ 526 (700)
T ss_pred cccHHH
Confidence 444433
No 90
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00032 Score=72.31 Aligned_cols=470 Identities=13% Similarity=0.114 Sum_probs=245.5
Q ss_pred hhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCc-chHHHHHHHHHHHHHHh-hcChhhHH
Q 006898 46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGS-QMRESDLV 123 (626)
Q Consensus 46 ~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~i~~-~~~~~~~~ 123 (626)
.+.+..++.+..+++|.+|+.+.++|..+. ......+.++.-+.++. ++.+|.+|+-.++.-++ +|.+..-.
T Consensus 4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e------~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~ 77 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPSVRKPAERALRSLE------GQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS 77 (960)
T ss_pred HHHHHHHHHhcCCCCCccCchHHHHHHHhc------cCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC
Confidence 355666777777888999998888888652 23444444444444433 67788888888877666 55432100
Q ss_pred HhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhH
Q 006898 124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDI 203 (626)
Q Consensus 124 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 203 (626)
.....++.++.+...+..+.-+....++....++++.+++.-- +..|+.+
T Consensus 78 -----------------------------~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DF-P~kWptL 127 (960)
T KOG1992|consen 78 -----------------------------PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDF-PDKWPTL 127 (960)
T ss_pred -----------------------------ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcccc-chhhHHH
Confidence 0112234455666666676666678899888888888876433 3567889
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 006898 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP 283 (626)
Q Consensus 204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~ 283 (626)
+|.+..-++..|-.+-.+.+..-..+-+.+..+...+.+..-++..+ +.++..+ ..++.
T Consensus 128 l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vL---------------d~f~~Pl------t~Lf~ 186 (960)
T KOG1992|consen 128 LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVL---------------DRFAEPL------TDLFR 186 (960)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHH---------------HhhHhHH------HHHHH
Confidence 99988888877665555555555545554443222222221111111 1111000 00000
Q ss_pred HHHHhc--CCChHHHHHHHHHhHHHHHHhh---C----h---HHHHHhhHHHHHHhcc--------C-CC----HHHHHH
Q 006898 284 AYVRLL--RDNEAEVRIAAAGKVTKFCRIL---N----P---ELAIQHILPCVKELSS--------D-SS----QHVRSA 338 (626)
Q Consensus 284 ~l~~~l--~d~~~~vr~~a~~~l~~l~~~~---~----~---~~~~~~l~~~l~~l~~--------d-~~----~~vr~~ 338 (626)
....+. .+++...-......+--+++.+ . + +...+..++.+.+++. | .+ ..+|..
T Consensus 187 ~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ 266 (960)
T KOG1992|consen 187 KTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQ 266 (960)
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHH
Confidence 000011 0111110000001111111110 0 0 0112233343333332 1 11 267778
Q ss_pred HHHHHHhhhhhhcHHH--HHHhHHHHHHHhhcCC----CH-HHHHHHHHhhHHHHhhhchhh--HHhhHHHHHHHHhcCC
Q 006898 339 LASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDE----FP-DVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR 409 (626)
Q Consensus 339 ~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~----~~-~vr~~a~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~~ 409 (626)
+|+.+.-.++...+++ +.++++...-.++.+. .. .....|+..|..+++.-.... -.+.++..+.+...=+
T Consensus 267 ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~Vvlp 346 (960)
T KOG1992|consen 267 ICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLP 346 (960)
T ss_pred HHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhccc
Confidence 8887776665544332 2334443334444432 22 233445555555543221110 0133444444443334
Q ss_pred ChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHhChHHHhhhh---HHHHH-hhh
Q 006898 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHI---TPQVL-EMI 484 (626)
Q Consensus 410 ~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~~~~~~i---l~~l~-~~l 484 (626)
+...|..-.+ .|.+.-+..+-+-+.-.+ ..-|++|+..++.++..+... ...-+ +..++ +..
T Consensus 347 N~~lR~eDeE------------lFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~-vt~v~~~~v~~~l~~y~ 413 (960)
T KOG1992|consen 347 NLILREEDEE------------LFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQ-VTGVFSSEVQRLLDQYS 413 (960)
T ss_pred ccccchhhHH------------HhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHhc
Confidence 4433433222 222223334444443333 345778899999999988433 22222 22222 233
Q ss_pred cCC--ChHHHHHHHHHHHHhccccC---------------hHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 485 NNP--HYLYRMTILRAISLLAPVMG---------------SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 485 ~~~--~~~vR~~a~~~l~~i~~~~~---------------~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
.+| ||.-+..++..+..++-.-+ .+++...++|.|..--....|-+|..+++-+.-+-..++.
T Consensus 414 ~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~ 493 (960)
T KOG1992|consen 414 KNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGK 493 (960)
T ss_pred cCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCCh
Confidence 344 89988888888887764311 1356778888887755566677777666655544444443
Q ss_pred chhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898 548 SVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRK 596 (626)
Q Consensus 548 ~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~ 596 (626)
.+...++|.+. +++..+..-|-. ||+.+++++-.+.++
T Consensus 494 -~~lm~~~p~li-~~L~a~s~vvhs---------YAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 494 -EHLMALLPRLI-RFLEAESRVVHS---------YAAIAIEKLLTVREN 531 (960)
T ss_pred -HHHHHHHHHHH-HhccCcchHHHH---------HHHHHHHhccccccC
Confidence 44467888888 888888888888 999999998665555
No 91
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1.8e-05 Score=70.27 Aligned_cols=237 Identities=19% Similarity=0.150 Sum_probs=149.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh--HHHHHHHHHhHHHHHHhhChHHHHHhh
Q 006898 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHI 320 (626)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l 320 (626)
+..+.+...|.+...+...+.++|+.. ..+-+|.+...+.|++ |-||..|.++|+.+.. +..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~ 101 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PES 101 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhh
Confidence 555666666667777777777877765 3567888888887655 8899999999998873 556
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHH
Q 006898 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (626)
Q Consensus 321 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~ 400 (626)
.+.+.+..+|+...||..+..++..+--.-+-+.. ....|.. + .|+.+. ...+. +.
T Consensus 102 ~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~-S--vdPa~p---~~~ss-----------------v~ 157 (289)
T KOG0567|consen 102 LEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYI-S--VDPAPP---ANLSS-----------------VH 157 (289)
T ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCccc-c--CCCCCc---ccccc-----------------HH
Confidence 77788877888888988766665554311100000 0000000 0 233222 00111 11
Q ss_pred HHHHHhcCCC--hHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 006898 401 AIVELAEDRH--WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (626)
Q Consensus 401 ~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~ 478 (626)
.+...+.|.+ -..|..++-.+-.+ |.+ .-+-.+...+.++..-.|..++.++|++-. ..-+|
T Consensus 158 ~lr~~lld~t~~l~~Ry~amF~LRn~----g~E----eaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~ 221 (289)
T KOG0567|consen 158 ELRAELLDETKPLFERYRAMFYLRNI----GTE----EAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIP 221 (289)
T ss_pred HHHHHHHhcchhHHHHHhhhhHhhcc----CcH----HHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhH
Confidence 1111111111 12233333333222 211 122345566778888899999999988853 33577
Q ss_pred HHHhhhcC--CChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898 479 QVLEMINN--PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (626)
Q Consensus 479 ~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 543 (626)
.+.+.+.| .++-||..+++++|.++. +..++.|.+.++|+++-||..+.-+|.-.--
T Consensus 222 ~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 222 SLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 88887665 578899999999998875 5778899999999999999999888876543
No 92
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.52 E-value=0.0002 Score=75.48 Aligned_cols=365 Identities=15% Similarity=0.145 Sum_probs=217.1
Q ss_pred HhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHH
Q 006898 170 QLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPV 245 (626)
Q Consensus 170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~ 245 (626)
.++...+.-+| .+...|.++++....+ -....+++.+.++++.++.++...++..|..++-.... .-....+++.
T Consensus 257 ~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~k 335 (708)
T PF05804_consen 257 TLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEK 335 (708)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHH
Confidence 33334333344 4556677777654321 23345788888889888888998888888887744332 2234568889
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHHhhH
Q 006898 246 IVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHIL 321 (626)
Q Consensus 246 l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~ 321 (626)
+.+++..++..++..+...|..++..-. .......++|.+..+++|+ ..+..++..|..++..-... ...+..+
T Consensus 336 L~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcI 413 (708)
T PF05804_consen 336 LLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCI 413 (708)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchH
Confidence 9999998888999999998888764221 1122346889999999875 45555666666655421111 1123456
Q ss_pred HHHHHh-ccCCCHHHHHHHHHHHHhhhhhhcH-HH-HHHhHHHHHHH-hhcCCCHHHHHHHHHhhHHHHhhhchhh-HHh
Q 006898 322 PCVKEL-SSDSSQHVRSALASVIMGMAPLLGK-DA-TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDL-LSQ 396 (626)
Q Consensus 322 ~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~-~~-~~~~l~~~l~~-~l~d~~~~vr~~a~~~L~~~~~~~~~~~-~~~ 396 (626)
|.+.++ ...++.++...++..+..++..-.. +. ....-++.++. .++..++- .++.+.++..+-|+.. ...
T Consensus 414 p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~ 489 (708)
T PF05804_consen 414 PQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV 489 (708)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH
Confidence 777664 4456666666555555555432211 11 11112233332 23333322 2233444444432211 111
Q ss_pred hHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhCh----h-hHH-HHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHh
Q 006898 397 SLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV----G-FFD-DKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEF 467 (626)
Q Consensus 397 ~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~----~-~~~-~~l~p~l~~~l~d~--~~~VR~~a~~~l~~l~~~~ 467 (626)
..+..+.+.+..+ ++ ...+++++.+++.--+ . .+. ..++|.+...+... ..++...++..+|+++..-
T Consensus 490 ~~i~~L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~ 566 (708)
T PF05804_consen 490 DFIGDLAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP 566 (708)
T ss_pred HHHHHHHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence 2333333444333 33 4555666666553211 1 122 25788888887543 3468888888888887432
Q ss_pred ChH--HHhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChHH-h--hhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898 468 GPE--WAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI-T--CSRLLPVVINASKDRVPNIKFNVAKVLQS 540 (626)
Q Consensus 468 ~~~--~~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~~-~--~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 540 (626)
... .....+++.+.++++. .|...-...+.++.++..+-.... . ...+...+..++.|+++.||..+-.+|.-
T Consensus 567 ~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldi 646 (708)
T PF05804_consen 567 ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDI 646 (708)
T ss_pred HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 111 2246788999998765 357778888889998887633222 1 24677899999999999999999999988
Q ss_pred HHhh
Q 006898 541 LIPI 544 (626)
Q Consensus 541 i~~~ 544 (626)
+...
T Consensus 647 i~e~ 650 (708)
T PF05804_consen 647 IAEY 650 (708)
T ss_pred HHHh
Confidence 7765
No 93
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.52 E-value=7.5e-07 Score=68.27 Aligned_cols=88 Identities=20% Similarity=0.274 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH--hhhcHHHHHhhhCCCCCc
Q 006898 453 RDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVP 528 (626)
Q Consensus 453 R~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~--~~~~~l~~l~~~l~d~~~ 528 (626)
|..+..+|+.++..++.. ...+.++|.+...+.|++++||..|++++.++++....+. +.+.+++.|.++..|+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 556666666666665554 2346677777777777777777777777777776665443 356777777778888888
Q ss_pred hHHHHHHHHHHHH
Q 006898 529 NIKFNVAKVLQSL 541 (626)
Q Consensus 529 ~vR~~a~~~l~~i 541 (626)
+||..| +.|.++
T Consensus 83 ~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 83 NVRSAA-ELLDRL 94 (97)
T ss_pred hHHHHH-HHHHHH
Confidence 887665 444443
No 94
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.52 E-value=0.00088 Score=70.80 Aligned_cols=369 Identities=13% Similarity=0.135 Sum_probs=217.4
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHhhcccCch--hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCccccc
Q 006898 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMD 280 (626)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~ 280 (626)
..+..++...+.-.| .++..|.++++...-+ -....+++.+.++++..+..+...++..+..++..-. .......
T Consensus 253 kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g 331 (708)
T PF05804_consen 253 KKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG 331 (708)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 344445555544455 5677788888765442 2345688888888888888888888888877763321 1122457
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc-H-HHHH
Q 006898 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-K-DATI 356 (626)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~-~-~~~~ 356 (626)
+++.+..++..++.+++..++..|..++-.-. ...+...++|.+..++.+++ .|..+...+..++..-. + -+..
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAY 409 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhh
Confidence 89999999998888999999998888765322 23445678899999998765 34555666666653211 1 1223
Q ss_pred HhHHHHHHHhhc-CCCHHHHHHHHHhhHHHHhhhch-h-hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh--h
Q 006898 357 EQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI-D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--G 431 (626)
Q Consensus 357 ~~l~~~l~~~l~-d~~~~vr~~a~~~L~~~~~~~~~-~-~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~ 431 (626)
...+|.+..++. .+++.+...++..+-+++..-.. + ......++.+.+......- ...+..+-.++..-|+ .
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~ 486 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKE 486 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHH
Confidence 356777777654 34555554444333333221100 0 0012234444443322111 1223344444443322 2
Q ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh--ChHH---H-hhhhHHHHHhhhcCC--ChHHHHHHHHHHHHhc
Q 006898 432 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEW---A-MQHITPQVLEMINNP--HYLYRMTILRAISLLA 503 (626)
Q Consensus 432 ~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~--~~~~---~-~~~il~~l~~~l~~~--~~~vR~~a~~~l~~i~ 503 (626)
.|.+++.|++-......+. ...++|+|.+...- +.+| . ...++|.+.+.+..+ ..++...++..+|.++
T Consensus 487 ~f~~~i~~L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 487 LFVDFIGDLAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred HHHHHHHHHHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 2344444433332222333 45566666665532 2222 2 247899999887653 4568888888999887
Q ss_pred cccChH--HhhhcHHHHHhhhCCC--CCchHHHHHHHHHHHHHhhhccch---hhhcccchHHhhhccCCCccccccccc
Q 006898 504 PVMGSE--ITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSV---STFSVSPFSFMLYLNVNNFNVGFIFAA 576 (626)
Q Consensus 504 ~~~~~~--~~~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~i~~~~~~~~---~~~~i~~~l~~~l~~d~d~~vr~~~~~ 576 (626)
..-... .....+.+.|..+++. .+.+.-...+.++.++..+-.... ....+..-|. .+..|.+.+||.
T Consensus 564 ~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~yli-dL~~d~N~~ir~---- 638 (708)
T PF05804_consen 564 SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLI-DLMHDKNAEIRK---- 638 (708)
T ss_pred CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHH-HHhcCCCHHHHH----
Confidence 532222 2345677777777643 346777788888888876632221 1234566666 788999999999
Q ss_pred CchhHHHHHHHHHHHH
Q 006898 577 FPLVLFSCLALNYCHR 592 (626)
Q Consensus 577 ~~~~~~a~~al~~~~~ 592 (626)
.+..+|+-+..
T Consensus 639 -----~~d~~Ldii~e 649 (708)
T PF05804_consen 639 -----VCDNALDIIAE 649 (708)
T ss_pred -----HHHHHHHHHHH
Confidence 99999988753
No 95
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.48 E-value=8.8e-07 Score=67.89 Aligned_cols=88 Identities=26% Similarity=0.351 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCh
Q 006898 218 VRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNE 293 (626)
Q Consensus 218 vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~ 293 (626)
.|..++-++.+++..++. ..+.+.++|.+...++|.+++||..+++++..+++..+.+.. .+++++.+.+++.|.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 366777777777766665 456677777778888888888888888888888777654432 2466777777778888
Q ss_pred HHHHHHHHHhHHH
Q 006898 294 AEVRIAAAGKVTK 306 (626)
Q Consensus 294 ~~vr~~a~~~l~~ 306 (626)
++||.+| ..|..
T Consensus 82 ~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 82 ENVRSAA-ELLDR 93 (97)
T ss_pred hhHHHHH-HHHHH
Confidence 8887766 44433
No 96
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.47 E-value=2e-05 Score=80.17 Aligned_cols=238 Identities=15% Similarity=0.225 Sum_probs=179.3
Q ss_pred ChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc-CC
Q 006898 292 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DE 370 (626)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~ 370 (626)
.++.-+..-.+.|.++...++...+.+.++|.+.+.+.+. ..--...-.+..+++......+...++|.+...++ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 3456666777888888888888888888999887655332 11122223344455555666778888999988887 44
Q ss_pred CHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-hcCCc
Q 006898 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKV 449 (626)
Q Consensus 371 ~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~-l~d~~ 449 (626)
...++.-.++.+..+.+....+.+.+.++|.|...+++.+.+++..++..+..+++.++.....+.++|.+..+ +...+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 45677777888888889999999999999999999999999999999999999999999888889999998776 56778
Q ss_pred hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc--cChHHhhhcHHHHHhhhCCCCC
Q 006898 450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV--MGSEITCSRLLPVVINASKDRV 527 (626)
Q Consensus 450 ~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~--~~~~~~~~~~l~~l~~~l~d~~ 527 (626)
..|+..++.|++.+++.+......+.+ +.+.+..+.+++.+....+.+...++-. .|.+...+.++|.+.-+...+.
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~-lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDEL-LPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 899999999999999877654333444 4444556677788888888877766532 2346667889999888877666
Q ss_pred chHHH
Q 006898 528 PNIKF 532 (626)
Q Consensus 528 ~~vR~ 532 (626)
-++-+
T Consensus 522 L~~~Q 526 (700)
T KOG2137|consen 522 LNGEQ 526 (700)
T ss_pred ccHHH
Confidence 55433
No 97
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.47 E-value=0.0032 Score=66.08 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=112.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh--H
Q 006898 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--E 470 (626)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--~ 470 (626)
..+.|.+.+.........|...+.+++.+....+.+... +.++|.+++.+.=++..||..+..++..+....+. .
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 457787777776556667777888888887766655433 56888999998888888999999888888765443 2
Q ss_pred HHhhhhHHHHHhhhcCCC---hHHHHHHHHHHHHhccccChH---HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898 471 WAMQHITPQVLEMINNPH---YLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (626)
Q Consensus 471 ~~~~~il~~l~~~l~~~~---~~vR~~a~~~l~~i~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 543 (626)
.....++|.+..+-.|++ -.||..|++|++.+.+..+.. .+.+.++..+...+.|+..-||..|.++=.++..
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 345778888888777765 468999999999888866543 3667888888889999999999998887666543
No 98
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.46 E-value=2e-05 Score=72.74 Aligned_cols=180 Identities=14% Similarity=0.095 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHhhhhhhc-HHHHHH-hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc
Q 006898 330 DSSQHVRSALASVIMGMAPLLG-KDATIE-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407 (626)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~~~~-~~~~~~-~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~ 407 (626)
..++.+++.+..+++..+..-. ++...+ ..++.+.+++.++++.+|..|+.++..+..........+..++.+.+...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 4567777777777777654322 222222 35778888899999999999999888876554433333455666655443
Q ss_pred C--CChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh--ChHHHhhhhHHHHHhh
Q 006898 408 D--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEM 483 (626)
Q Consensus 408 ~--~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~--~~~~~~~~il~~l~~~ 483 (626)
+ -+..++.+++..+..+.-...........+|.++.++...+..+|..+.++|..+...- ..+....+.++.+..+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~L 183 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSL 183 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHH
Confidence 3 35688888888888875433222233345777888888889999999999998887642 2334456677788887
Q ss_pred hcCC-ChHHHHHHHHHHHHhccccChH
Q 006898 484 INNP-HYLYRMTILRAISLLAPVMGSE 509 (626)
Q Consensus 484 l~~~-~~~vR~~a~~~l~~i~~~~~~~ 509 (626)
++.. +..+-..++..+.++.+.+.++
T Consensus 184 f~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 184 FNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 7765 6777888888888887655443
No 99
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=0.0047 Score=66.75 Aligned_cols=138 Identities=15% Similarity=0.097 Sum_probs=106.4
Q ss_pred hChhhHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhc-CCChHHHHHHHHHHHHh
Q 006898 428 LGVGFFDDKLGALCMQWL----QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLL 502 (626)
Q Consensus 428 ~~~~~~~~~l~p~l~~~l----~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~-~~~~~vR~~a~~~l~~i 502 (626)
.|+......+.|++.... .-.++.++.+|.-+++.+...- .+ +...=+|.+...++ .|++.+|.+++-++|.+
T Consensus 911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-a~-fces~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-AE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence 355666678899988887 3346899999999999987542 22 45566888888665 89999999999999988
Q ss_pred ccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCccccc
Q 006898 503 APVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 503 ~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
+-.++. +.+..-+.|...+.|.++.||.+|..++..++.. +-.-....++.+. .++.|++.+|+.
T Consensus 989 av~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA-~cl~D~~~~Isd 1053 (1251)
T KOG0414|consen 989 AVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMA-LCLEDPNAEISD 1053 (1251)
T ss_pred hhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHH-HHhcCCcHHHHH
Confidence 765543 3455667888899999999999999999988755 1122245677778 899999999999
No 100
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.44 E-value=0.0038 Score=65.44 Aligned_cols=232 Identities=15% Similarity=0.116 Sum_probs=145.1
Q ss_pred ChHHHHHHHHHhHHHHHHh--hChHHHHHhhHHH-HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc
Q 006898 292 NEAEVRIAAAGKVTKFCRI--LNPELAIQHILPC-VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK 368 (626)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~-l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (626)
+.|..-..+..+++.+++. ..+... +.++.. +..+..|..+.+|..++.++...++.-.-..+.+.++..+.++..
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas 540 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLAS 540 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcc
Confidence 3455555677777777775 233332 333333 334556777888888888887776432223446677888888888
Q ss_pred CCCHHHHHHHHHhhHHHHhhhchh--hHHhhHHHHHHHHh--cCCChHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHH
Q 006898 369 DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLASQL-GVGFFDDKLGALCMQ 443 (626)
Q Consensus 369 d~~~~vr~~a~~~L~~~~~~~~~~--~~~~~i~~~l~~~~--~~~~~~~r~~~~~~l~~l~~~~-~~~~~~~~l~p~l~~ 443 (626)
+...+|-...+++|..+++.-... .....+.|....+. ...++.+-..+...+..+.+.. ........++|.+..
T Consensus 541 ~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslis 620 (1005)
T KOG2274|consen 541 KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLIS 620 (1005)
T ss_pred cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 888899999999998887653221 12245667665553 2334456666666666555422 111234678888888
Q ss_pred HhcCCc----hHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhh-hcCCChHHHHHHHHHHHHhccccC--------
Q 006898 444 WLQDKV----YSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEM-INNPHYLYRMTILRAISLLAPVMG-------- 507 (626)
Q Consensus 444 ~l~d~~----~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~-l~~~~~~vR~~a~~~l~~i~~~~~-------- 507 (626)
.++-++ .....-+...|..+.+.-.++ .+....+|.+.+. +...+..+-+.+-+|+..++..-.
T Consensus 621 il~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~ 700 (1005)
T KOG2274|consen 621 VLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHD 700 (1005)
T ss_pred HHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhcc
Confidence 886655 556667778888777765443 3457778888885 455677788888888888765311
Q ss_pred -hHHhhhcHHHHHhhhCC
Q 006898 508 -SEITCSRLLPVVINASK 524 (626)
Q Consensus 508 -~~~~~~~~l~~l~~~l~ 524 (626)
+..-...++..+.++++
T Consensus 701 e~g~~~~yImqV~sqLLd 718 (1005)
T KOG2274|consen 701 EPGHNLWYIMQVLSQLLD 718 (1005)
T ss_pred CCCccHHHHHHHHHHHcC
Confidence 11112356666766663
No 101
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.00024 Score=72.22 Aligned_cols=278 Identities=17% Similarity=0.104 Sum_probs=157.3
Q ss_pred HhhHhHHhcCCCChHHHHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHH
Q 006898 145 ACGLFHIAYPSAPDILKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAV 223 (626)
Q Consensus 145 a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~ 223 (626)
|.-.++.+-.+-+... .+.|...+.+ +++.||..++-.||-.+-.-. ..+++..+...+..++.-.-++|.
T Consensus 399 alyAlGLIhA~hG~~~----~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa----~~eiYe~lKevLy~D~AvsGEAAg 470 (929)
T KOG2062|consen 399 ALYALGLIHANHGRGI----TDYLLQQLKTAENEVVRHGACLGLGLAGMGSA----NEEIYEKLKEVLYNDSAVSGEAAG 470 (929)
T ss_pred hhhhhhccccCcCccH----HHHHHHHHHhccchhhhhhhhhhccchhcccc----cHHHHHHHHHHHhccchhhhhHHH
Confidence 3444444433333333 3334433333 367789988887765433211 245667777777666555555555
Q ss_pred HHHHHhhcccCchhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHH
Q 006898 224 EGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAG 302 (626)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 302 (626)
-+++-+.-..... ..+.-+.....+. ..++.+..+-.|.-+. +|. .++.-|++-+++.|.+|-+|...+.
T Consensus 471 i~MGl~mlGt~~~----eaiedm~~Ya~ETQHeki~RGl~vGiaL~~--ygr---qe~Ad~lI~el~~dkdpilR~~Gm~ 541 (929)
T KOG2062|consen 471 IAMGLLMLGTANQ----EAIEDMLTYAQETQHEKIIRGLAVGIALVV--YGR---QEDADPLIKELLRDKDPILRYGGMY 541 (929)
T ss_pred HhhhhHhhCcCcH----HHHHHHHHHhhhhhHHHHHHHHHHhHHHHH--hhh---hhhhHHHHHHHhcCCchhhhhhhHH
Confidence 5665544333222 2233333333222 2334444333333222 232 2345577778888888888888776
Q ss_pred hHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC-CCHHHHHHHHHh
Q 006898 303 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISK 381 (626)
Q Consensus 303 ~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~ 381 (626)
+++---...|.......++ --..+|.+..||+++.-+++.++-. .+...|-.+.+|.+ -++.||.+++-+
T Consensus 542 t~alAy~GTgnnkair~lL---h~aVsD~nDDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~A 612 (929)
T KOG2062|consen 542 TLALAYVGTGNNKAIRRLL---HVAVSDVNDDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAMA 612 (929)
T ss_pred HHHHHHhccCchhhHHHhh---cccccccchHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHHH
Confidence 6644322223332222222 2236788889999988888776522 22345556666654 478899999989
Q ss_pred hHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCchHH
Q 006898 382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSI 452 (626)
Q Consensus 382 L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~V 452 (626)
|+-.|...|.. ..+..|..+..|+.-.||..++-++..+.-+..+... ...+...+.+.+.|++.+.
T Consensus 613 LGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 613 LGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 88888777753 4556666677788888888888887776554432211 1345556666666666554
No 102
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.38 E-value=2e-06 Score=66.11 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=11.7
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhh
Q 006898 321 LPCVKELSSDSSQHVRSALASVIMGM 346 (626)
Q Consensus 321 ~~~l~~l~~d~~~~vr~~~~~~l~~l 346 (626)
+|.+.++++|+++.||.+++.+++.+
T Consensus 33 ~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 33 IPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34444444444444444444444444
No 103
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.0025 Score=62.22 Aligned_cols=248 Identities=16% Similarity=0.135 Sum_probs=141.3
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch--hhhhhhHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Q 006898 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVI-VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (626)
Q Consensus 202 ~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l-~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 278 (626)
.++-.+..-..|++..+|..|+..|++.++..+.+ .+.+.++..+ ..+..+.+..|...+..++..+..........
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 34444555567888899999999999999986653 2333444444 45556667888888888888777655433322
Q ss_pred cc---hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH---HHHH----hhHHHHHHhccCCCHHHHHHHHHHHHhhhh
Q 006898 279 MD---LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQ----HILPCVKELSSDSSQHVRSALASVIMGMAP 348 (626)
Q Consensus 279 ~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~----~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~ 348 (626)
.. +.-.+.+++.|+++++|.+++..++.+....|.. .+.+ .+.|.+.. ++|+++.+-.++-..+.....
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l~d~~p~va~ACr~~~~~c~p 416 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-LQDPNPYVARACRSELRTCYP 416 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-eCCCChHHHHHHHHHHHhcCc
Confidence 33 3333456778899999999999999998877643 2222 23333322 478899887776655555554
Q ss_pred hhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHH-------hcCCCh-HHHHHHHHH
Q 006898 349 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-------AEDRHW-RVRLAIIEY 420 (626)
Q Consensus 349 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~-~~r~~~~~~ 420 (626)
.++.+.... .+-..+ |.+.. |-.+. ...++..+ ..+.|.+..+ +-+.+| .+|.++...
T Consensus 417 ~l~rke~~~----~~q~~l-d~~~~-~~q~F--yn~~c~~L------~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~ 482 (533)
T KOG2032|consen 417 NLVRKELYH----LFQESL-DTDMA-RFQAF--YNQWCIQL------NHIHPDILMLLLTEDQHIFSSSWEQVREAAVLK 482 (533)
T ss_pred hhHHHHHHH----HHhhhh-HHhHH-HHHHH--HHHHHHHH------hhhCHHHHHHHHHhchhheecchHHHHHHHHHH
Confidence 444332221 111111 21111 11110 01111111 1222222222 224566 677776665
Q ss_pred HHHHHHhhChhh----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898 421 IPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 421 l~~l~~~~~~~~----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
-......+.... ....+...+..+..|+-++|+..|.++++.+.
T Consensus 483 t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 483 TTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 555444433322 22445556666778888888888888877664
No 104
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=0.00023 Score=72.08 Aligned_cols=169 Identities=15% Similarity=0.092 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh
Q 006898 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD 237 (626)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (626)
..+.++..++...+.++..||..+++.+..+....+. +...+.+...+..-+.|..+.||..|+.+|..+-..-+.+
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 4455555555555566666666666666665553332 2333444455555556666666666666665554322211
Q ss_pred hhhhhHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHh-HHHHHHhhChHH
Q 006898 238 CVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK-VTKFCRILNPEL 315 (626)
Q Consensus 238 ~~~~i~~~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~-l~~l~~~~~~~~ 315 (626)
.-.+...+..+ -+||+.+||+++..++.. .+.-.|.++....|-+.-+|+.+... ++++ ......
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~ls- 227 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-DLRSLS- 227 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhh-
Confidence 12233333332 255666666665544431 23345555566666555555544322 2222 110000
Q ss_pred HHHhhHHHHHHhccCCCHHHHHHHHHHH
Q 006898 316 AIQHILPCVKELSSDSSQHVRSALASVI 343 (626)
Q Consensus 316 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l 343 (626)
.+.-.-.+...++|.+..||.++..++
T Consensus 228 -i~krv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 228 -IDKRVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred -HHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 122234445555666666666655543
No 105
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.002 Score=72.73 Aligned_cols=457 Identities=14% Similarity=0.137 Sum_probs=254.1
Q ss_pred HHhhHhHHhcCCCChHHHHHHHHHHHHhcCCC----CHHHHHHHHH--h----HHHHHHhhC-----ccchhhhHHHHHH
Q 006898 144 SACGLFHIAYPSAPDILKTELRSIYTQLCQDD----MPMVRRSAAS--N----LGKFAATVE-----PAHLKTDIMSIFE 208 (626)
Q Consensus 144 ~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~----~~~vR~~a~~--~----l~~l~~~~~-----~~~~~~~ll~~l~ 208 (626)
.+...++.++++.+...+-.++..+....... ...|+..+.. + ++.+++..+ ++.+...-+..+.
T Consensus 803 ta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~ 882 (2067)
T KOG1822|consen 803 TAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIV 882 (2067)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHh
Confidence 56678888889988877777777766654432 2234443333 3 333333322 2333333455566
Q ss_pred HhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCCccc---cchHHH
Q 006898 209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTR---MDLVPA 284 (626)
Q Consensus 209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~~~ 284 (626)
..+..+++..|-.+.++++.++...+...+...+.....+-+ +-.++..|..-.-++|.+-++.|.-... ..-+..
T Consensus 883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i 962 (2067)
T KOG1822|consen 883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI 962 (2067)
T ss_pred hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence 777888999999999999999999998777777666655444 4456667777777888888877654333 334557
Q ss_pred HHHhcCCCh-HHHHHHHHHhHHHHHHhhChHH--HHHhhHHHHHH-hccCC--CHHHHHHHHHHHH------hhhhhhcH
Q 006898 285 YVRLLRDNE-AEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKE-LSSDS--SQHVRSALASVIM------GMAPLLGK 352 (626)
Q Consensus 285 l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~-l~~d~--~~~vr~~~~~~l~------~l~~~~~~ 352 (626)
++.+..|+. |.|+..++.++..+....++-. +...-+-.+.. ++.++ +..+++..-+++. .+....|+
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgp 1042 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGP 1042 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhccc
Confidence 778888877 5999999999999887665542 11222222222 33333 3455555554444 44444433
Q ss_pred HH-----------HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 006898 353 DA-----------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (626)
Q Consensus 353 ~~-----------~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l 421 (626)
+. .....+-.+.-.+..+++.+..+++.++..+.-......-.+.+++.+..++.....-.|.+.+..+
T Consensus 1043 eL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~cl 1122 (2067)
T KOG1822|consen 1043 ELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSCL 1122 (2067)
T ss_pred ccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhhh
Confidence 21 1112222333344566888888898888776443333222355677777776666555555544444
Q ss_pred HHHHHhhChhhH----------------HHHHH-----H-HHHHHhcC-CchHHHHHHHHHHHHHHHHhChH----H---
Q 006898 422 PLLASQLGVGFF----------------DDKLG-----A-LCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE----W--- 471 (626)
Q Consensus 422 ~~l~~~~~~~~~----------------~~~l~-----p-~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~----~--- 471 (626)
-.++........ ...+. + .++.++.- .+...+..-..+|..+...+..+ |
T Consensus 1123 rql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~~~~~~~ls~Wl~l 1202 (2067)
T KOG1822|consen 1123 RQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLNSLADELLSSWLML 1202 (2067)
T ss_pred hHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444332110000 00011 1 12222221 11122222333333321111000 0
Q ss_pred ------------------------------HhhhhHHHHHhhh------cCCChHHHHHHHHHHHHhccccChH------
Q 006898 472 ------------------------------AMQHITPQVLEMI------NNPHYLYRMTILRAISLLAPVMGSE------ 509 (626)
Q Consensus 472 ------------------------------~~~~il~~l~~~l------~~~~~~vR~~a~~~l~~i~~~~~~~------ 509 (626)
..+..++.-.... -.|.|..|..++.++..++..+...
T Consensus 1203 ~k~~l~~~~~~s~~~e~s~~kd~~~~~~~~~dDdt~~~t~~~~~~s~p~~qprW~Trvfaa~cv~r~i~~c~a~~~h~d~ 1282 (2067)
T KOG1822|consen 1203 LKDLLQAAEDFSASKELSGEKDEEDEEQESGDDDTVLTTVSRTDDSKPLVQPRWPTRVFAAECVLRIINVCEAVSAHFDM 1282 (2067)
T ss_pred HHHHHHHhhhccccccccccccccchhhcccchhhHHhhhccccccCCccccccchHHHHHHHHHHHhhhhhhhhhhhhH
Confidence 0122223322222 1247999999999999776554421
Q ss_pred --------------Hh----hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc------------chhhhcccchHH
Q 006898 510 --------------IT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------------SVSTFSVSPFSF 559 (626)
Q Consensus 510 --------------~~----~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~------------~~~~~~i~~~l~ 559 (626)
.+ ...+...-.....+++...|....+.+..++..+.. +.++..+-.++.
T Consensus 1283 ~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~~L~~vi~~fSsvpEPeFpGh~iLEQ~qAqvgsAlr 1362 (2067)
T KOG1822|consen 1283 ALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLESLEEVIKRFSSVPEPEFPGHSILEQFQAQVGSALR 1362 (2067)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHhc
Confidence 00 011222222344788899999999999998877643 133344444444
Q ss_pred hhhccCCCcccccccccCchhHHHHHHHHHHHHHhhcCCcccccchhhHHHHH
Q 006898 560 MLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSLRIQMLM 612 (626)
Q Consensus 560 ~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (626)
-++.+|..++|-. .|+..+..+++.-..+.-.+.-|++-+-
T Consensus 1363 pAF~~dts~dv~a------------~acqVcS~wigsgv~~dl~dl~rVhqLL 1403 (2067)
T KOG1822|consen 1363 PAFSDDTSPDVTA------------KACQVCSTWIGSGVARDLSDLSRVHQLL 1403 (2067)
T ss_pred hhccCCCChHHHH------------HHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 2445676677555 6667777777777777666666666543
No 106
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.0001 Score=76.16 Aligned_cols=215 Identities=18% Similarity=0.187 Sum_probs=154.6
Q ss_pred HhccCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHH
Q 006898 326 ELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (626)
Q Consensus 326 ~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~ 403 (626)
..+.|+...+|..+...+..+.+...+ -.....++.+....++|+++.|-.+|++.+..+++... +.++|.+.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL~ 808 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDLS 808 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHHH
Confidence 344667778888888888888774322 23355688899999999999999999998888887743 56788887
Q ss_pred HHhcC----CChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhC---hHHHhh
Q 006898 404 ELAED----RHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQ 474 (626)
Q Consensus 404 ~~~~~----~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~ 474 (626)
+.+.+ .....|...-+++..+++..|+=.+ ...+...++....|++...|..++..+|.++.... .+ ...
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ 887 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFH 887 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHH
Confidence 75432 2245566666999999999886443 35788889999999999999999999999998653 33 334
Q ss_pred hhHHHHHhh-hcCCChHHHHHHHHHHHHhccccChHHh--h----hcHHHHHhhh-CCCCCchHHHHHHHHHHHHHhhhc
Q 006898 475 HITPQVLEM-INNPHYLYRMTILRAISLLAPVMGSEIT--C----SRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVD 546 (626)
Q Consensus 475 ~il~~l~~~-l~~~~~~vR~~a~~~l~~i~~~~~~~~~--~----~~~l~~l~~~-l~d~~~~vR~~a~~~l~~i~~~~~ 546 (626)
+++..+... ..|....+|.+|+..+..+....|.... . -.....+... -.+++..+|..++.++.++-..+.
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~ 967 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALE 967 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 445555543 4578899999999999999887664310 0 0111122222 257777899999999988866554
No 107
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.33 E-value=6.6e-05 Score=66.10 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 398 i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
.+|.+...++|+++.+|..++..+..+... +.-.....++..+..++.|+++.||..|..++..+....+++
T Consensus 26 ~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~ 97 (178)
T PF12717_consen 26 YLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPN 97 (178)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccch
Confidence 344444444444444444444444443321 111122333344455556666666666666666666553333
No 108
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.33 E-value=5.8e-06 Score=63.47 Aligned_cols=85 Identities=28% Similarity=0.414 Sum_probs=61.0
Q ss_pred HHHHHhc-cCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHH
Q 006898 322 PCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (626)
Q Consensus 322 ~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~ 400 (626)
|.+.+.+ +|+++.+|..++.+++.+. .+..+|.+..+++|+++.||..|+.+|+.+.. +..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 4455544 7888999998888888654 23567888888888999999999999887742 34667
Q ss_pred HHHHHhcCC-ChHHHHHHHHHHH
Q 006898 401 AIVELAEDR-HWRVRLAIIEYIP 422 (626)
Q Consensus 401 ~l~~~~~~~-~~~~r~~~~~~l~ 422 (626)
.+.+.+.++ ++.+|..++.+++
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 777766554 4556777776653
No 109
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.0018 Score=59.68 Aligned_cols=243 Identities=12% Similarity=0.109 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH--------HHHHHHHHHHHhcCCCC
Q 006898 105 KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--------LKTELRSIYTQLCQDDM 176 (626)
Q Consensus 105 ~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--------~~~~l~~~l~~l~~d~~ 176 (626)
.++.++.++.+...+..+...++|-+...+..++..++..+|..++.+.+.++.. .-.++++.++.++..++
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 3778888888887777777788899988888888999999999999998888742 13568888899999999
Q ss_pred HHHHHHHHHhHHHHHHhhCc--cchhhhHHH--HHHHhhcCCchhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHh
Q 006898 177 PMVRRSAASNLGKFAATVEP--AHLKTDIMS--IFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNF 249 (626)
Q Consensus 177 ~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~--~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~ 249 (626)
-.|-+++.+.+..++..-.. -.+.+++++ .+.++....++-+|......+..+.+..+. +.....++..+..-
T Consensus 142 deVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE 221 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE 221 (524)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH
Confidence 99999999999998764211 011111111 112222223344555555555554443332 11233455555444
Q ss_pred c-CCCCHHHHHHHHHHHHHHHHHh-CCCccc-cchHHHHHHhcC--CChHHHHHHHHHhHHHHHHhhChHHH--------
Q 006898 250 S-QDKSWRVRYMVANQLYELCEAV-GPEPTR-MDLVPAYVRLLR--DNEAEVRIAAAGKVTKFCRILNPELA-------- 316 (626)
Q Consensus 250 ~-~d~~~~vR~~a~~~l~~l~~~~-~~~~~~-~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~-------- 316 (626)
+ ...+.-||..+.+....++..- |.+... +.++..+.+.+. |.+|--.-. ++..+++.+|.+.+
T Consensus 222 lkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr---almgfgkffgkeaimdvseeai 298 (524)
T KOG4413|consen 222 LKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR---ALMGFGKFFGKEAIMDVSEEAI 298 (524)
T ss_pred hcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH---HHHHHHHHhcchHHhhcCHHHH
Confidence 4 3467788999888888887754 333322 245555555553 444444333 34444444444322
Q ss_pred HHhhH---HHHHHhccCCCHHHHHHHHHHHHhhhhhh
Q 006898 317 IQHIL---PCVKELSSDSSQHVRSALASVIMGMAPLL 350 (626)
Q Consensus 317 ~~~l~---~~l~~l~~d~~~~vr~~~~~~l~~l~~~~ 350 (626)
.+.++ .-..+..+..++....+++.+++.+++..
T Consensus 299 cealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 299 CEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 11111 11223445566677788888888887643
No 110
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.31 E-value=5e-06 Score=68.35 Aligned_cols=107 Identities=15% Similarity=0.082 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhC---hHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH---
Q 006898 436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--- 509 (626)
Q Consensus 436 ~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--- 509 (626)
.++|.+..++.+.++.+|..++.+++.++.... .......++|.+.+++.++++.+|..++.++++++...+..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 356667777777778888888888888875421 12233478888888888888888888888888888754321
Q ss_pred HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHH
Q 006898 510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (626)
Q Consensus 510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~ 542 (626)
.....+++.+...+++.+..+|..++++|..+.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 223457888888888888889999888888764
No 111
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.31 E-value=5.4e-05 Score=66.63 Aligned_cols=112 Identities=20% Similarity=0.200 Sum_probs=81.0
Q ss_pred chHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHH
Q 006898 99 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM 178 (626)
Q Consensus 99 ~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~ 178 (626)
++.||..++.+++.++...+. +.+.+.|.+...+.|+++.+|..|..++..+...-.-..+..++..+..++.|+++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 356788888888887777653 334456677777778888888888888777765543345566767777888999999
Q ss_pred HHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhc
Q 006898 179 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 212 (626)
Q Consensus 179 vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~ 212 (626)
||..|...+..+.....++.+.+.+.+.+..+-+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999998876666665655555555443
No 112
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.00065 Score=70.28 Aligned_cols=186 Identities=18% Similarity=0.170 Sum_probs=131.1
Q ss_pred cHHHHHHHhcCc-cHHHHHHHHhhHHHHHHhhChHhh-----hhhhcccccc-cc-CCchHHHHHHHHHHhccccccCCc
Q 006898 10 PIAVLIDELKND-DIQLRLNSIRRLSTIARALGEERT-----RKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGV 81 (626)
Q Consensus 10 ~i~~l~~~l~s~-d~~~r~~a~~~l~~i~~~~~~~~~-----~~~l~~~l~~-~~-~~~~~vr~~~~~~l~~~~~~~~~~ 81 (626)
.+..|++.++.. |+....+|++-+.++ ..+|.+.+ .+.++|.|.. +. ..+.++...|++++..+...++..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~-L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEM-LSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHH-HhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 788999999977 999999999999988 44554443 4577888877 33 458899999999999987766532
Q ss_pred c---hhhcchHH-HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC
Q 006898 82 E---HAHVLLPP-LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (626)
Q Consensus 82 ~---~~~~l~~~-l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~ 157 (626)
. ..+-.+|. +.+|..-+--+|-+.+.+++..|.+.-+...+...-+......+.=-...++..|..+.++++..+.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 11224554 5667777777899999999999988877655443211111111111112344456666667777665
Q ss_pred hH---HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc
Q 006898 158 DI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP 196 (626)
Q Consensus 158 ~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~ 196 (626)
.+ ..-+.+|+|..+++..+.++=..++.++.+++..+.+
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 53 6678899999999998888888899999999987754
No 113
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=6.2e-05 Score=76.27 Aligned_cols=293 Identities=17% Similarity=0.118 Sum_probs=146.4
Q ss_pred CccHHHHHHHHhhHHHHHHhhChHh-hhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHH-Hhhhhc
Q 006898 20 NDDIQLRLNSIRRLSTIARALGEER-TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCT 96 (626)
Q Consensus 20 s~d~~~r~~a~~~l~~i~~~~~~~~-~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~-l~~l~~ 96 (626)
+.++ -++.|.-.|+.| +.|.+. ..+-+-|+|-. .....+-.--.+..++|-+-..-|. .+... +..|-+
T Consensus 353 AtNW-aKFtAtAsLGvI--H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~-----~~~~yL~~~Lk~ 424 (929)
T KOG2062|consen 353 ATNW-AKFTATASLGVI--HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGR-----GITDYLLQQLKT 424 (929)
T ss_pred cchH-hhhhhhhhccee--eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCc-----cHHHHHHHHHHh
Confidence 4455 347788888887 334333 35666777765 2222332333455566655332221 23333 333445
Q ss_pred CcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhc-CCCChHHHHHHHHHHHHhcCC-
Q 006898 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY-PSAPDILKTELRSIYTQLCQD- 174 (626)
Q Consensus 97 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~-~~~~~~~~~~l~~~l~~l~~d- 174 (626)
.+++.||+.++-.++-..-.-..+. +...+...+..++...-.+|.-.++.+. .....+..++ +.....+
T Consensus 425 ~~~e~v~hG~cLGlGLa~mGSa~~e----iYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaied----m~~Ya~ET 496 (929)
T KOG2062|consen 425 AENEVVRHGACLGLGLAGMGSANEE----IYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIED----MLTYAQET 496 (929)
T ss_pred ccchhhhhhhhhhccchhcccccHH----HHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHH----HHHHhhhh
Confidence 5677888888777765544333332 3334444444443333333333333332 2222222222 2222222
Q ss_pred CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCC
Q 006898 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 254 (626)
Q Consensus 175 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~ 254 (626)
+...+.+..+-.++-..- +.+ +..-|++.+++.|.++..|..+...++---...+.. ..+-..+.-..+|.+
T Consensus 497 QHeki~RGl~vGiaL~~y--grq---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn---kair~lLh~aVsD~n 568 (929)
T KOG2062|consen 497 QHEKIIRGLAVGIALVVY--GRQ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN---KAIRRLLHVAVSDVN 568 (929)
T ss_pred hHHHHHHHHHHhHHHHHh--hhh---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch---hhHHHhhcccccccc
Confidence 223444444433333222 111 234456666777777777766655544322222221 122222333466777
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCH
Q 006898 255 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 333 (626)
Q Consensus 255 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~ 333 (626)
..||++|+.+||-+.-. .....|...+++.+ -++-||-+++-+|+..|...|... .+..+..+.+|+..
T Consensus 569 DDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e----Ai~lLepl~~D~~~ 638 (929)
T KOG2062|consen 569 DDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE----AINLLEPLTSDPVD 638 (929)
T ss_pred hHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH----HHHHHhhhhcChHH
Confidence 77777777777755422 12333444454443 346777777777777776666543 24555556667777
Q ss_pred HHHHHHHHHHHhh
Q 006898 334 HVRSALASVIMGM 346 (626)
Q Consensus 334 ~vr~~~~~~l~~l 346 (626)
-||+.++-++.-+
T Consensus 639 fVRQgAlIa~amI 651 (929)
T KOG2062|consen 639 FVRQGALIALAMI 651 (929)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766555544
No 114
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.29 E-value=0.00017 Score=64.34 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=52.0
Q ss_pred HhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhhcccCchhhhhhhHHHHH
Q 006898 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247 (626)
Q Consensus 170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 247 (626)
+...|.+...+...+.++++... .+-+|.+...+.|+ .+.||..|.++|++++ .+...+++.
T Consensus 43 ka~~d~s~llkhe~ay~LgQ~~~--------~~Av~~l~~vl~desq~pmvRhEAaealga~~--------~~~~~~~l~ 106 (289)
T KOG0567|consen 43 KAFIDDSALLKHELAYVLGQMQD--------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--------DPESLEILT 106 (289)
T ss_pred Hhcccchhhhccchhhhhhhhcc--------chhhHHHHHHhcccccchHHHHHHHHHHHhhc--------chhhHHHHH
Confidence 33344445555555555655432 34556666666665 4567778888887765 344667777
Q ss_pred HhcCCCCHHHHHHHHHHHHHHH
Q 006898 248 NFSQDKSWRVRYMVANQLYELC 269 (626)
Q Consensus 248 ~~~~d~~~~vR~~a~~~l~~l~ 269 (626)
+..+|+...||.++..++..+-
T Consensus 107 k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 107 KYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred HHhcCCccccchHHHHHHHHHH
Confidence 7777777778877666665553
No 115
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.24 E-value=5.9e-05 Score=69.63 Aligned_cols=184 Identities=16% Similarity=0.154 Sum_probs=114.6
Q ss_pred HHHhcC-CCCHHHHHHHHHhHHHHHHhhCccchhh--hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHH
Q 006898 168 YTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKT--DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (626)
Q Consensus 168 l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~--~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~ 244 (626)
+..+++ .+++.+++.+..+++..+..-..+.... ..++.+..++.++++.+|..|+.++.+++.........+..++
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~ 96 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP 96 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 334434 5678899999998888765432222222 3678889999999999999999999988766555333333333
Q ss_pred HHHH-hcCC-CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--hHHHHHhh
Q 006898 245 VIVN-FSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHI 320 (626)
Q Consensus 245 ~l~~-~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l 320 (626)
.+.+ ..++ .+..++.++.+.|..+.............+|.++.++...+..+|..+++.|..+++.-. .+.+....
T Consensus 97 ~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~ 176 (254)
T PF04826_consen 97 QVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQV 176 (254)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccc
Confidence 3333 3333 356778888888887753322112223457777888888888889889888888876432 22333344
Q ss_pred HHHHHHhccCC-CHHHHHHHHHHHHhhhhhhc
Q 006898 321 LPCVKELSSDS-SQHVRSALASVIMGMAPLLG 351 (626)
Q Consensus 321 ~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~ 351 (626)
...+..+.+.. +..+...++..+..+...+.
T Consensus 177 ~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 177 LSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred hhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 45555555543 44555555666666655443
No 116
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.24 E-value=0.0032 Score=63.73 Aligned_cols=126 Identities=15% Similarity=0.101 Sum_probs=94.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHh---ChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---HHhhhcHHHHH
Q 006898 446 QDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVV 519 (626)
Q Consensus 446 ~d~~~~VR~~a~~~l~~l~~~~---~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~~l~~l 519 (626)
--.+..++.+|+.++..+...+ ........+...+.+++.||+..+...++.++.+++-.+++ .+.....+..+
T Consensus 387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 4457789999999988776543 22223467788888999999999999999999999876664 34567788899
Q ss_pred hhhCCCCCchHHHHHHHHHHHHHhhhccc---hhhhccc-chHHhhhccCCCccccc
Q 006898 520 INASKDRVPNIKFNVAKVLQSLIPIVDQS---VSTFSVS-PFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 520 ~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~-~~l~~~l~~d~d~~vr~ 572 (626)
...+.++++++|..+.++|..+.-...+. .....+. ..+. .+.+|+|+.|.+
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~-~l~nd~d~~Vqe 522 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLIL-DLINDPDWAVQE 522 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHH-HHHhCCCHHHHH
Confidence 99999999999999999999876433321 1112222 2233 678999999988
No 117
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.24 E-value=0.0082 Score=60.88 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=67.0
Q ss_pred HHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhh------hhhhccccccccCCchHHHHHHHHHHhccccccCCcch--
Q 006898 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERT------RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEH-- 83 (626)
Q Consensus 12 ~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~------~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~-- 83 (626)
-.++..+-+.|++.-..|+.-..+.....++... ..+.+-.+....+..++.....+..++.+.. +.+..
T Consensus 12 ~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~--~eqd~v~ 89 (678)
T KOG1293|consen 12 LDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFL--GEQDKVD 89 (678)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHh--hccchHH
Confidence 3566667778888777777777766554443321 2233344444566777777777777776544 22222
Q ss_pred ---hhcchHHHhhhhcCcc-hHHHHHHHHHHHHHHhhcC
Q 006898 84 ---AHVLLPPLETLCTVEE-TCVRDKAVESLCRIGSQMR 118 (626)
Q Consensus 84 ---~~~l~~~l~~l~~~~~-~~vR~~a~~~l~~i~~~~~ 118 (626)
....++-+..++++++ ..+++...+++..+.+..+
T Consensus 90 svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~ 128 (678)
T KOG1293|consen 90 SVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK 128 (678)
T ss_pred HHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence 2333445666777777 8899999999999988664
No 118
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.00084 Score=69.53 Aligned_cols=187 Identities=12% Similarity=0.133 Sum_probs=122.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc-----hhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCchh
Q 006898 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH-----LKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQD 237 (626)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~ 237 (626)
+..++..+-...++..+-.++..+.++... +.+. -...++|.+..+++++ +.++...|+++|..+++.+++..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~m-gnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSM-GNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhh-cchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 334444443333444444444444443332 2222 1356889999999987 67999999999999999999831
Q ss_pred ---hhhhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh
Q 006898 238 ---CVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (626)
Q Consensus 238 ---~~~~i~~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (626)
.....+|.+.. +..=.--.|-+.+.+++..+.+.-++......-+-.++..+.=-.-.+++.|+.....+|+.+..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 23457777654 44434456778888888888877665543332222333333211346788888888999998877
Q ss_pred H--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc
Q 006898 314 E--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 351 (626)
Q Consensus 314 ~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~ 351 (626)
+ .+.-+.+|.|..+++..+.++-...+-++..++..+.
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 6 3345678999999998888888888888888887663
No 119
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.23 E-value=0.0077 Score=60.08 Aligned_cols=172 Identities=17% Similarity=0.127 Sum_probs=105.1
Q ss_pred hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 006898 199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (626)
Q Consensus 199 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~ 276 (626)
+.+.++..+......++..||..+++.+..+...+++ +...+.++.-+...+-|..+.||..|+.++..+...-+.+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 3344555566666677778888888888888777776 55566666677777778888888888888877765443322
Q ss_pred cccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHH-HHHHhhhhhhcHHH
Q 006898 277 TRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALA-SVIMGMAPLLGKDA 354 (626)
Q Consensus 277 ~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~-~~l~~l~~~~~~~~ 354 (626)
+.+...+...+ .|++.+||..|+..+.. .+.-.|++.+-..|-+-..|+.+. .+++.++....-+
T Consensus 168 --n~~~n~l~~~vqnDPS~EVRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls- 234 (885)
T COG5218 168 --NRIVNLLKDIVQNDPSDEVRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS- 234 (885)
T ss_pred --HHHHHHHHHHHhcCcHHHHHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc-
Confidence 23334444333 57778888877655432 123357777767776666666544 3445544221110
Q ss_pred HHHhHHHHHHHhhcCCCHHHHHHHHHhhHH
Q 006898 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (626)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~ 384 (626)
..+.+. .+.-.+.|.+.+|+.++...+..
T Consensus 235 i~kri~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 235 IDKRIL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred ccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 111222 44556778888888888777654
No 120
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.23 E-value=9.8e-06 Score=66.56 Aligned_cols=107 Identities=18% Similarity=0.082 Sum_probs=78.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh---ChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH---
Q 006898 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--- 470 (626)
Q Consensus 397 ~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--- 470 (626)
.+++.+.+++.+++|.+|..++.++..++... ........++|.+..++.|+++.+|..++.+++.++......
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 45666777777777777777777777776532 122233467888888889999999999999999998654321
Q ss_pred HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 006898 471 WAMQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (626)
Q Consensus 471 ~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~ 503 (626)
.....+++.+.+.+++++..+|..++.++.+++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 123557889999999889999999999998875
No 121
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.21 E-value=0.00036 Score=70.84 Aligned_cols=282 Identities=16% Similarity=0.148 Sum_probs=148.0
Q ss_pred ccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchh
Q 006898 138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS 217 (626)
Q Consensus 138 ~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~ 217 (626)
+...+..|++.|+.++.+++ +..++.+..++.+|+|++..||..|++.|..++... +.+...+.+.|.+++..+++.
T Consensus 35 ~~k~K~Laaq~I~kffk~FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~tdd~~ 111 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQTDDPV 111 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HH
T ss_pred CHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhcccHH
Confidence 45678889999999999886 455677888899999999999999999999998853 457788999999999988877
Q ss_pred HHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHhCCCccc------cchHHHHHHhc
Q 006898 218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPTR------MDLVPAYVRLL 289 (626)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~------~~l~~~l~~~l 289 (626)
.+...-.+|..+.+.-++.. +-.++.... ...+..+|..+.+.|..-...++.+... +.+...+.+.+
T Consensus 112 E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL 187 (556)
T PF05918_consen 112 ELDAVKNSLMSLLKQDPKGT----LTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL 187 (556)
T ss_dssp HHHHHHHHHHHHHHH-HHHH----HHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH
Confidence 66666667766655433321 122222222 2345678998887775544444443322 34666667778
Q ss_pred CCChHHHHHHHHHhHHHHHHh--hChHHHHHhhHHHHHHhcc-C-----CCHHH----HHHHHHHHHhhhhhhcHHHHHH
Q 006898 290 RDNEAEVRIAAAGKVTKFCRI--LNPELAIQHILPCVKELSS-D-----SSQHV----RSALASVIMGMAPLLGKDATIE 357 (626)
Q Consensus 290 ~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~l~~-d-----~~~~v----r~~~~~~l~~l~~~~~~~~~~~ 357 (626)
.|-..+-=.-.+..|..+-.. .......+.+++.+.+... | .+... ...+-.++..+........+..
T Consensus 188 ~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~ 267 (556)
T PF05918_consen 188 QDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVN 267 (556)
T ss_dssp TT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHH
T ss_pred HhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHH
Confidence 774322111222222221110 1112233556666664432 1 22222 2222223333333323333444
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc------CC----ChHHHHHHHHHHHHHHHh
Q 006898 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DR----HWRVRLAIIEYIPLLASQ 427 (626)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~------~~----~~~~r~~~~~~l~~l~~~ 427 (626)
.+...++..+.+-.+..+...++.+++++...+... ...++|.+.+++. +. ++..-++.+.++..++..
T Consensus 268 y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k 346 (556)
T PF05918_consen 268 YMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK 346 (556)
T ss_dssp HHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence 444444445566567888899999999988887655 3556666655542 12 234444555555555543
No 122
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0023 Score=62.48 Aligned_cols=281 Identities=14% Similarity=0.077 Sum_probs=165.3
Q ss_pred ccchhHHHhhHhHHhcCC-C-Ch-HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHh-h
Q 006898 138 WFTARVSACGLFHIAYPS-A-PD-ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDL-T 211 (626)
Q Consensus 138 ~~~~r~~a~~~l~~~~~~-~-~~-~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l-~ 211 (626)
.+..|..-...++.+... . ++ ....+++..+..-..|++..+|..++..|++.+...+.+ .+.+.++..+... .
T Consensus 230 ~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~ 309 (533)
T KOG2032|consen 230 KENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLY 309 (533)
T ss_pred cccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHh
Confidence 355666655555554332 1 11 344556666666678999999999999999999886653 3344555555544 4
Q ss_pred cCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHH
Q 006898 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI---VNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAY 285 (626)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l---~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l 285 (626)
.+.+.+|...++.+|..+.+........+++++.- ..+..|.+..+|.++...+|.++...|... +.+++...+
T Consensus 310 D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~ 389 (533)
T KOG2032|consen 310 DDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRL 389 (533)
T ss_pred cCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcc
Confidence 55577899999999998888777655666666654 557788999999999999999999887543 222222122
Q ss_pred ---HHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCH-HHHHHHHHHHHhhhhhhcHHHHHHhHHH
Q 006898 286 ---VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGKDATIEQLLP 361 (626)
Q Consensus 286 ---~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 361 (626)
+--+.|++|.+-.++-..+.. +++....+.+...+.+.+ |.+- +.+.---.+...+...+.. ..-.+..
T Consensus 390 ~~lllhl~d~~p~va~ACr~~~~~----c~p~l~rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~d--~l~~~~t 462 (533)
T KOG2032|consen 390 APLLLHLQDPNPYVARACRSELRT----CYPNLVRKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHPD--ILMLLLT 462 (533)
T ss_pred ccceeeeCCCChHHHHHHHHHHHh----cCchhHHHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCHH--HHHHHHH
Confidence 223468888876555443333 233322233333333222 2211 1111111111112111110 1112223
Q ss_pred HHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH----HhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 006898 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (626)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~----~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~ 425 (626)
....+++...+.||.++..--..+......+.- ...+...+..+.+|+-+.++..+.++++.+.
T Consensus 463 ~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 463 EDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred hchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 334445556678888877666655544433221 2456677777888999999999888887654
No 123
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00036 Score=72.27 Aligned_cols=207 Identities=20% Similarity=0.245 Sum_probs=142.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHH
Q 006898 249 FSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE 326 (626)
Q Consensus 249 ~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 326 (626)
.+.|+...+|..+.+.+..+.+...+. ...+.++..++..++|+++.|-..|++++..+++..+ +.++|.+.+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL~e 809 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDLSE 809 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHHHH
Confidence 456777888999999998888744222 3345789999999999999999999999999998633 445666554
Q ss_pred -hccC---CCHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc---hhhHHhh
Q 006898 327 -LSSD---SSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQS 397 (626)
Q Consensus 327 -l~~d---~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~---~~~~~~~ 397 (626)
..+. ....-|.-+.+++..+....|+- .+.+.++..++.+.+|++...|..++.+++.+++... .+++ .+
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~e 888 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-HE 888 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-HH
Confidence 2221 11344555557777777666652 2455788888999999999999999999999987654 4544 34
Q ss_pred HHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH-----------H-hcCCchHHHHHHHHHHHHHH
Q 006898 398 LLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-----------W-LQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 398 i~~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~-----------~-l~d~~~~VR~~a~~~l~~l~ 464 (626)
+...+..+. .|.+..+|.+|+..+..+.++.|.. ++|++-. . -.+++..+|..|..|+..+-
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d-----lLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED-----LLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh-----hHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 445554443 5778899999999999988877743 3333211 1 13344456666666665554
Q ss_pred HH
Q 006898 465 EE 466 (626)
Q Consensus 465 ~~ 466 (626)
..
T Consensus 964 a~ 965 (982)
T KOG4653|consen 964 AA 965 (982)
T ss_pred HH
Confidence 44
No 124
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=0.00022 Score=72.14 Aligned_cols=185 Identities=19% Similarity=0.165 Sum_probs=125.9
Q ss_pred HHHHHHHHhhcCh----hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCC---ChHHHHHHHHHHHHhcCCCCHHH
Q 006898 107 VESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA---PDILKTELRSIYTQLCQDDMPMV 179 (626)
Q Consensus 107 ~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~---~~~~~~~l~~~l~~l~~d~~~~v 179 (626)
++-+.++...++. +++.+.+.-.+.+....++..||..+++++..+.... ++.....+..-+..-+.|..+.|
T Consensus 63 l~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~V 142 (892)
T KOG2025|consen 63 LSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNV 142 (892)
T ss_pred HHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchH
Confidence 3344444444443 3344444555556666778889999999999988744 34567778888888889999999
Q ss_pred HHHHHHhHHHHHHhhCccchhhhHHHHHHHhh-cCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHH
Q 006898 180 RRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVR 258 (626)
Q Consensus 180 R~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR 258 (626)
|..|..+|..+-..-+++. -.+...+..++ +|++++||.+++..+.. .+.-+|++.....|.+..+|
T Consensus 143 RiqAv~aLsrlQ~d~~dee--~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anR 210 (892)
T KOG2025|consen 143 RIQAVLALSRLQGDPKDEE--CPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANR 210 (892)
T ss_pred HHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHH
Confidence 9999999999875433322 23445555444 67899999999887743 35567888888999999899
Q ss_pred HHHHHHH-HHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHH
Q 006898 259 YMVANQL-YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 306 (626)
Q Consensus 259 ~~a~~~l-~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 306 (626)
+.+.+-+ ..+ .... .....-+-.+...+.|.+..|+.++..++..
T Consensus 211 rlvY~r~lpki-d~r~--lsi~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 211 RLVYERCLPKI-DLRS--LSIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred HHHHHHhhhhh-hhhh--hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 8876543 333 1110 0112445556677889888999888877643
No 125
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.13 E-value=0.00079 Score=64.66 Aligned_cols=204 Identities=13% Similarity=0.097 Sum_probs=135.7
Q ss_pred HHhhcCCCHHHHHHHHHhhHHHHhh-hchhhH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC----hhhHHH
Q 006898 364 LSLLKDEFPDVRLNIISKLDQVNQV-IGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDD 435 (626)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~L~~~~~~-~~~~~~---~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~----~~~~~~ 435 (626)
+..+.|.....|.+++..+..+... +-.+.+ ...+++.+.+.++......+..++.+++-++-.+| ...+.+
T Consensus 49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~ 128 (309)
T PF05004_consen 49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE 128 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence 3444566677777777776665432 222322 24567777777776666777778888888877765 334556
Q ss_pred HHHHHHHHHhcCCch--HHHHHHHHHHHHHHHHhChHH-Hhh---hhHHHHHhh--h-cC---------CChHHHHHHHH
Q 006898 436 KLGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEW-AMQ---HITPQVLEM--I-NN---------PHYLYRMTILR 497 (626)
Q Consensus 436 ~l~p~l~~~l~d~~~--~VR~~a~~~l~~l~~~~~~~~-~~~---~il~~l~~~--l-~~---------~~~~vR~~a~~ 497 (626)
.+.|.+...+.|... .+|.+++.+|+.++-..+.+. -.. ..+..+... . .+ ++..+..+|+.
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 788889888887653 577888888888876544331 122 233322111 1 11 24679999999
Q ss_pred HHHHhccccChH---HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---c---hhhhcccchHHhhhccCCCc
Q 006898 498 AISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S---VSTFSVSPFSFMLYLNVNNF 568 (626)
Q Consensus 498 ~l~~i~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~---~~~~~i~~~l~~~l~~d~d~ 568 (626)
+.+-++..++.. ...+..+|.|..++..++.+||.+|-.+|+-+.+.... + ...+.+...|. .+..|+.+
T Consensus 209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~-~La~dS~K 287 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLR-ELATDSSK 287 (309)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHH-HHHHhccC
Confidence 999988777763 34566889999999999999999999999998877643 1 22345666666 66666543
No 126
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.07 E-value=0.00026 Score=71.84 Aligned_cols=54 Identities=20% Similarity=0.410 Sum_probs=23.3
Q ss_pred cCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCC------CCCchHHHHHHHHHH
Q 006898 485 NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK------DRVPNIKFNVAKVLQ 539 (626)
Q Consensus 485 ~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~------d~~~~vR~~a~~~l~ 539 (626)
++=....|...+..+..++.+++... ...++|.+..++. +..++....-++|+-
T Consensus 278 ~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL 337 (556)
T PF05918_consen 278 SDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLL 337 (556)
T ss_dssp T-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHH
T ss_pred hhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHH
Confidence 33355678888999999988887643 3444454444432 233444444444443
No 127
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.06 E-value=0.0025 Score=66.03 Aligned_cols=222 Identities=15% Similarity=0.146 Sum_probs=140.2
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHH--Hhcc-----CCCHHHHHHHHHHHHhhhhhhcH
Q 006898 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALASVIMGMAPLLGK 352 (626)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~--~l~~-----d~~~~vr~~~~~~l~~l~~~~~~ 352 (626)
+.++.++-...|.+.+|...|-..|.++...+....+.+.++.... .... -.++.+|..+...+..-...
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A--- 313 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA--- 313 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH---
Confidence 5566666666788889988888888888776666555555555554 1111 13567777766665543211
Q ss_pred HHHHHhHHHHHHHhhcCC--CHHHHHHHHHhh---HHHHhhhchhhH---HhhHHHHHHHHhc--------CCChHHHHH
Q 006898 353 DATIEQLLPIFLSLLKDE--FPDVRLNIISKL---DQVNQVIGIDLL---SQSLLPAIVELAE--------DRHWRVRLA 416 (626)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~L---~~~~~~~~~~~~---~~~i~~~l~~~~~--------~~~~~~r~~ 416 (626)
-...+.++.++...+... +..+|..++..+ .......++..+ ...+...+....+ ..+...|..
T Consensus 314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL 393 (501)
T ss_pred HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence 112345666777777766 677888888888 666666665543 1223333333342 235678999
Q ss_pred HHHHHHHHHHhhChhhH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH-----HhhhhHHHHH-hhhcCCCh
Q 006898 417 IIEYIPLLASQLGVGFF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-----AMQHITPQVL-EMINNPHY 489 (626)
Q Consensus 417 ~~~~l~~l~~~~~~~~~-~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~-----~~~~il~~l~-~~l~~~~~ 489 (626)
+.++++.+++....-+. .-.++..++..+.++..++|.+.-++|+.+...+.... .....+..+. ....+...
T Consensus 394 aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (501)
T PF13001_consen 394 AYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVR 473 (501)
T ss_pred HHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhH
Confidence 99999999987654331 23466677777889999999999999999988775421 1112222222 23345567
Q ss_pred HHHHHHHHHHHHhcc
Q 006898 490 LYRMTILRAISLLAP 504 (626)
Q Consensus 490 ~vR~~a~~~l~~i~~ 504 (626)
.+|..|++....+..
T Consensus 474 ~~R~~avk~an~~fp 488 (501)
T PF13001_consen 474 SCRYAAVKYANACFP 488 (501)
T ss_pred HHHHHHHHHHHHhCC
Confidence 788888888877654
No 128
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.0062 Score=56.20 Aligned_cols=303 Identities=13% Similarity=0.163 Sum_probs=159.0
Q ss_pred hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-------cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 006898 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (626)
Q Consensus 239 ~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 311 (626)
.+.++|.+...+..++..|+..+++.++.+.+...... ....+++.++..+..++.+|..+|++++..++..-
T Consensus 80 apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfp 159 (524)
T KOG4413|consen 80 APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP 159 (524)
T ss_pred chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH
Confidence 34444444444444444444444444444443332111 12467788888888888899999999998886531
Q ss_pred Ch-HH-HHHhhHH--HHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcC-CCHHHHHHHHHhhH
Q 006898 312 NP-EL-AIQHILP--CVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKD-EFPDVRLNIISKLD 383 (626)
Q Consensus 312 ~~-~~-~~~~l~~--~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~L~ 383 (626)
.. +. +-..+.. .+.++....+.-+|.-..+.+..+.+.-+. +....-++..+..-++- ++.-|+..+++-..
T Consensus 160 aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt 239 (524)
T KOG4413|consen 160 AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT 239 (524)
T ss_pred HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence 11 00 0001110 112222223344455555555554433221 11123356666665554 66778888777766
Q ss_pred HHHhhh-chhhH-HhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHHhhChhhHH--------HH---HHHHHHHHhcCC
Q 006898 384 QVNQVI-GIDLL-SQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFD--------DK---LGALCMQWLQDK 448 (626)
Q Consensus 384 ~~~~~~-~~~~~-~~~i~~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~~~~--------~~---l~p~l~~~l~d~ 448 (626)
.++..- |.+++ .+.++..+.+++. |.++.-+..++..++.+ +|...+. +. .+.-.+......
T Consensus 240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf---fgkeaimdvseeaicealiiaidgsfEmiEmn 316 (524)
T KOG4413|consen 240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF---FGKEAIMDVSEEAICEALIIAIDGSFEMIEMN 316 (524)
T ss_pred HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH---hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC
Confidence 665432 33332 2346666666653 44444444344434333 3332221 11 122234455667
Q ss_pred chHHHHHHHHHHHHHHHHhC-hHHHhhhhHHH---HHhhhcCCC-hHHHHHHHHHHHHhcccc--ChHHh----------
Q 006898 449 VYSIRDAAANNLKRLAEEFG-PEWAMQHITPQ---VLEMINNPH-YLYRMTILRAISLLAPVM--GSEIT---------- 511 (626)
Q Consensus 449 ~~~VR~~a~~~l~~l~~~~~-~~~~~~~il~~---l~~~l~~~~-~~vR~~a~~~l~~i~~~~--~~~~~---------- 511 (626)
++....+|..++|.+..... .+.....--|. +.....|.| ..-...+++++..++... .++..
T Consensus 317 DpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlr 396 (524)
T KOG4413|consen 317 DPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLR 396 (524)
T ss_pred CchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHH
Confidence 77889999999999876542 23222222222 222233433 345677788888886432 11110
Q ss_pred ---hh--------cHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898 512 ---CS--------RLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 512 ---~~--------~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 544 (626)
.+ .=+..+...++.+.+++|.++.+++..+...
T Consensus 397 clifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 397 CLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred HHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence 00 1234566677899999999999999988754
No 129
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.05 E-value=0.00039 Score=67.13 Aligned_cols=196 Identities=18% Similarity=0.205 Sum_probs=119.4
Q ss_pred HHHHHHHHhcCCccchhHHHhhHhHHh-cCC-CC--hHHHHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCccc--
Q 006898 126 YIPLVKRLAAGEWFTARVSACGLFHIA-YPS-AP--DILKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAH-- 198 (626)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~-~~~-~~--~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~-- 198 (626)
+...+.++.+++....|..|..-+..+ +.. ++ +++..+|+..+++.++| .+...|+.|.+.|..++..-+...
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 444455555555555666666533333 322 11 24566777777887877 778888889999998887655422
Q ss_pred hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc-
Q 006898 199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT- 277 (626)
Q Consensus 199 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~- 277 (626)
.....+--+++...|..++|-..|.+.+..+.....+......+.|.+.. .+...--.+++.+..+.+.+..+..
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~ 443 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELL 443 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHH
Confidence 12233444555667776666555555544444333333333444444433 2333334555677777776655432
Q ss_pred --ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhcc
Q 006898 278 --RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (626)
Q Consensus 278 --~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 329 (626)
..++.|.+++.....+..||+.|+.+|..+...+|.+. +.|++.++..
T Consensus 444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~----mePhL~~Lt~ 493 (516)
T KOG2956|consen 444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEE----MEPHLEQLTS 493 (516)
T ss_pred HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHh----hhhHhhhccH
Confidence 35788888888888888899999999988888888654 3566665543
No 130
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.026 Score=58.56 Aligned_cols=192 Identities=14% Similarity=0.139 Sum_probs=120.5
Q ss_pred hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHhC--h
Q 006898 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFG--P 469 (626)
Q Consensus 393 ~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~--~ 469 (626)
++.+.++|.+. .-.+....+|...+-.++.+...-.+......+-..+.++++|. +..||.+++.++..+++..+ +
T Consensus 484 Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ 562 (978)
T KOG1993|consen 484 WLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSE 562 (978)
T ss_pred HHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCCh
Confidence 44556666665 11122344677777778887765444455556666788889998 77899999999999988643 2
Q ss_pred HHH---hhhhHHHHHhhhcC-CChHHHHHHHHHHHHhccccChH--H---hhhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898 470 EWA---MQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSE--I---TCSRLLPVVINASKDRVPNIKFNVAKVLQS 540 (626)
Q Consensus 470 ~~~---~~~il~~l~~~l~~-~~~~vR~~a~~~l~~i~~~~~~~--~---~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 540 (626)
+.+ .+.+...+.+++.. ...+.|...+..++.++.+.+.- + ..-.++|.+..-.+ ..+-.|.+...++.+
T Consensus 563 dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~ 641 (978)
T KOG1993|consen 563 DSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRN 641 (978)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHH
Confidence 211 13333333344433 46678888898888887765532 1 22345566665544 667899999999999
Q ss_pred HHhhhccc--hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898 541 LIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRK 596 (626)
Q Consensus 541 i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~ 596 (626)
+...+|.. .+.+.+.|.+. ...+-+.++-.. ....+++-....++.
T Consensus 642 lV~alg~qS~~~~~fL~pVIe-l~~D~~sP~hv~---------L~EDgmeLW~~~L~n 689 (978)
T KOG1993|consen 642 LVNALGAQSFEFYPFLYPVIE-LSTDPSSPEHVY---------LLEDGMELWLTTLMN 689 (978)
T ss_pred HHHHhccCCccchHHHHHHHH-HhcCCCCCceee---------hhhhHHHHHHHHHhc
Confidence 99999875 44566777777 433333444444 444555555444433
No 131
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.99 E-value=1e-05 Score=55.41 Aligned_cols=53 Identities=23% Similarity=0.156 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHhccccCh--HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHH
Q 006898 489 YLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541 (626)
Q Consensus 489 ~~vR~~a~~~l~~i~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i 541 (626)
|.+|..++.+++.+++..+. +.+.+.++|.|..+++|+++.||.+|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57899999999987765543 346788999999999999999999999999864
No 132
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.96 E-value=0.042 Score=60.11 Aligned_cols=149 Identities=16% Similarity=0.065 Sum_probs=103.3
Q ss_pred hcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh----hHHHhHHHHHHH--------HhcCC-ccchhHHHhhHhHH
Q 006898 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKR--------LAAGE-WFTARVSACGLFHI 151 (626)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~----~~~~~l~~~l~~--------l~~~~-~~~~r~~a~~~l~~ 151 (626)
+.++..|.+..-++.+++|+.+.-++..+.+.-+.. .+...+.-++-- ...+. -..+|..+++.++.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 334444444455789999999999998887654432 222221111111 11211 24689999999999
Q ss_pred hcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHh
Q 006898 152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 229 (626)
Q Consensus 152 ~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l 229 (626)
+..+.......+.++++.+++.-+.|++|...+..+......... ......+++.+...+.|.++.||..|...+..+
T Consensus 156 ~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~ 235 (1549)
T KOG0392|consen 156 YLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPA 235 (1549)
T ss_pred HHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhh
Confidence 999988888888999999999888999999988888776653222 233456778888899999999998888877665
Q ss_pred hccc
Q 006898 230 GKLL 233 (626)
Q Consensus 230 ~~~~ 233 (626)
....
T Consensus 236 ~s~~ 239 (1549)
T KOG0392|consen 236 PSIQ 239 (1549)
T ss_pred hHHH
Confidence 5444
No 133
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.95 E-value=0.00031 Score=73.32 Aligned_cols=147 Identities=14% Similarity=0.091 Sum_probs=116.7
Q ss_pred hhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhh
Q 006898 119 ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 194 (626)
Q Consensus 119 ~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~ 194 (626)
++.+...+.|.+.+........+|..-...++.+..+.+.+ ..+.++|.+++.++-++..||-...+.+..+....
T Consensus 861 kQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 861 KQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 34566678888887777555667778888888888888875 45789999999999999999999999888877655
Q ss_pred Cc--cchhhhHHHHHHHhhcCCc---hhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHH
Q 006898 195 EP--AHLKTDIMSIFEDLTQDDQ---DSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQL 265 (626)
Q Consensus 195 ~~--~~~~~~ll~~l~~l~~d~~---~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l 265 (626)
+. ....+.++|.+..+-.|.+ ..||..|+++|..+.+..+. -.+.+.++..+.+.+.|+-..||..|+.+=
T Consensus 941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 54 4556778999998888776 57999999999999987776 346677888888888998888998887653
No 134
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.95 E-value=0.0018 Score=62.23 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhhhhhhcHHH---HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh
Q 006898 332 SQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (626)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~ 389 (626)
+..+..++++.|+.+....+... ..+..+|.+..+|...+.+||.+|-++++-+.+..
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 46788888888888887776532 23456788888898889999999999888776543
No 135
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.94 E-value=0.0012 Score=63.84 Aligned_cols=188 Identities=15% Similarity=0.219 Sum_probs=122.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCch
Q 006898 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQ 236 (626)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~ 236 (626)
.+.+...+.++-+++...-|+.|...|-.+...-+- +.+..+|+..+.+.++| .++..|+.|++.|..+++.-+..
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 345566666666666677788777766665543221 22234577778888888 67889999999999998776542
Q ss_pred --hhhhhhHHHHHHhcCCCCHHHHHHHHHH-HHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh
Q 006898 237 --DCVAHILPVIVNFSQDKSWRVRYMVANQ-LYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (626)
Q Consensus 237 --~~~~~i~~~l~~~~~d~~~~vR~~a~~~-l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (626)
......+.-+.....|....|-..|.+. +..++.+.+... ...+.|.++. .+...-..+++.+.++.+.+..
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 2233344444555566666665555554 444555444211 2233444333 3445556777888888888887
Q ss_pred HH---HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH
Q 006898 314 EL---AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353 (626)
Q Consensus 314 ~~---~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (626)
+. +...+.|.+.+..++.+..||.++.-++..+....|.+
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 74 34677888888888888888888888888888777744
No 136
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.86 E-value=0.04 Score=55.27 Aligned_cols=167 Identities=14% Similarity=0.044 Sum_probs=107.0
Q ss_pred cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhCh--Hhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhc
Q 006898 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (626)
Q Consensus 10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~ 86 (626)
.+..++-+..|.|..+|..+++.|..+....++ +.....|+.-+.. +.|..+.||..|..+|..+-..-+.++. .
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen--~ 169 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN--R 169 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH--H
Confidence 345677778899999999999999998777765 4444444444444 7788999999999999887654444332 2
Q ss_pred chHHHhh-hhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccc-hhHHHhhHhHHhcCCCChHHHHHH
Q 006898 87 LLPPLET-LCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFT-ARVSACGLFHIAYPSAPDILKTEL 164 (626)
Q Consensus 87 l~~~l~~-l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~-~r~~a~~~l~~~~~~~~~~~~~~l 164 (626)
+..++.. +..||+.+||..|...+..=- --.|.+.+-+.|-+.. .|..-.+++..+.........+.+
T Consensus 170 ~~n~l~~~vqnDPS~EVRr~allni~vdn----------sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri 239 (885)
T COG5218 170 IVNLLKDIVQNDPSDEVRRLALLNISVDN----------STYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRI 239 (885)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHeeeCC----------CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcccccee
Confidence 2333333 446889999998775543111 1224444444443322 333445555555444433344444
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhHHH
Q 006898 165 RSIYTQLCQDDMPMVRRSAASNLGK 189 (626)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~ 189 (626)
+ ++...+.|.+..||.++..++..
T Consensus 240 ~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 240 L-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred h-hhhhcchhhhhhHHHHHHHHHHH
Confidence 4 56667888889999998888765
No 137
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.079 Score=57.80 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=113.5
Q ss_pred hcHHHHHHhHHHHHHHhhcC----CCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHH
Q 006898 350 LGKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLL 424 (626)
Q Consensus 350 ~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~r~~~~~~l~~l 424 (626)
.|+......+.|++....+. .+|+++.+|.-+|+.++-. +.+ +.+.-+|.+...++ ++++++|.-++-+++-+
T Consensus 911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~-fces~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence 45566677888988888753 4699999999999998653 222 33566788888776 78999999999888888
Q ss_pred HHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898 425 ASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (626)
Q Consensus 425 ~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~ 504 (626)
+-.++ .+.+..-+.++..++|.+..||..|..++..++-.-- .-....++.+..++.||+..+|..|-..+..+..
T Consensus 989 av~fp--nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm--iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 989 AVRFP--NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM--IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred hhhcc--cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh--hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 75443 2334567788999999999999999999988875411 1123356777788999999999999888777765
Q ss_pred c
Q 006898 505 V 505 (626)
Q Consensus 505 ~ 505 (626)
.
T Consensus 1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred c
Confidence 3
No 138
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.79 E-value=0.0074 Score=56.34 Aligned_cols=221 Identities=11% Similarity=0.042 Sum_probs=126.9
Q ss_pred HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHh----HHHHHHHHhcCCccchhHHHhhHhHHhc--CCCChHHHHHH
Q 006898 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW----YIPLVKRLAAGEWFTARVSACGLFHIAY--PSAPDILKTEL 164 (626)
Q Consensus 91 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~----l~~~l~~l~~~~~~~~r~~a~~~l~~~~--~~~~~~~~~~l 164 (626)
+...++++++.+|..|...|..+.+.++++.+... +..++..-+. +...+... ...+..+. ..++.+....+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~-D~~~~~~~-l~gl~~L~~~~~~~~~~~~~i 81 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD-DHACVQPA-LKGLLALVKMKNFSPESAVKI 81 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc-cHhhHHHH-HHHHHHHHhCcCCChhhHHHH
Confidence 34455678999999999999999999997544332 3444443332 33333333 44444443 33455555666
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCchhhh
Q 006898 165 RSIYTQLCQ--DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDCV 239 (626)
Q Consensus 165 ~~~l~~l~~--d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~ 239 (626)
+..+.+-.+ .-....|..+.+.+..+.+.... ....+.++..+.+.++.+ ||.--..+.+.+..+...++...+.
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~ 161 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFA 161 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 666555333 33467899999999888876543 122345666666666555 6666677777777777666654444
Q ss_pred hhhHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 006898 240 AHILPVIVNFS--------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (626)
Q Consensus 240 ~~i~~~l~~~~--------~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 311 (626)
+.+...+.-.. +|+..-.|......+..... ....+.+..+|.+++-+.++.+.++..++++|...+...
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 44444332211 23322223333222221111 112223566777777777777777777777777777766
Q ss_pred ChHH
Q 006898 312 NPEL 315 (626)
Q Consensus 312 ~~~~ 315 (626)
|...
T Consensus 240 ~~~~ 243 (262)
T PF14500_consen 240 GADS 243 (262)
T ss_pred CHHH
Confidence 6553
No 139
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.76 E-value=9.6e-05 Score=50.52 Aligned_cols=53 Identities=26% Similarity=0.308 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q 006898 333 QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (626)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~ 385 (626)
|.||.+++.+++.++...+. ..+.+.++|.+..+++|+++.||.+|+.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 68899999999987755443 345678889999999999999999999988753
No 140
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0012 Score=65.17 Aligned_cols=155 Identities=20% Similarity=0.181 Sum_probs=87.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHH-hhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHH
Q 006898 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (626)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~ 244 (626)
..+.+++.|.++..|.+.+-+++.--..-++.. ++..++. ..+|.++.||.+|+-+++-++- .. .+.+..
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~----vv~~lLh~avsD~nDDVrRAAViAlGfvc~--~D---~~~lv~ 589 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGNLG----VVSTLLHYAVSDGNDDVRRAAVIALGFVCC--DD---RDLLVG 589 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCcch----hHhhhheeecccCchHHHHHHHHheeeeEe--cC---cchhhH
Confidence 355566677777777777666654322223322 2222333 3677777788777777765441 11 122333
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH--HHhhHH
Q 006898 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA--IQHILP 322 (626)
Q Consensus 245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~ 322 (626)
.+.-+..+-+++||...+-++|-.+..-|. +....++..++.|...-||++|+-+++-+.....++.. ...+..
T Consensus 590 tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k 665 (926)
T COG5116 590 TVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIK 665 (926)
T ss_pred HHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHH
Confidence 344445556777887777777766655552 34456666677777777888777777766655443311 133444
Q ss_pred HHHHhccCCCH
Q 006898 323 CVKELSSDSSQ 333 (626)
Q Consensus 323 ~l~~l~~d~~~ 333 (626)
.+.+.+.|++.
T Consensus 666 ~f~~vI~~Khe 676 (926)
T COG5116 666 KFNRVIVDKHE 676 (926)
T ss_pred HHHHHHhhhhH
Confidence 45555555443
No 141
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.74 E-value=0.013 Score=60.87 Aligned_cols=184 Identities=15% Similarity=0.158 Sum_probs=122.8
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc--C---------CChHHHHHHHHHHHHHHH
Q 006898 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--D---------RHWRVRLAIIEYIPLLAS 426 (626)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~--~---------~~~~~r~~~~~~l~~l~~ 426 (626)
..++.++-.-.|...+|...|-..|.++...+... .++..|..+.. . -++.+|...+..+..=..
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~----~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~ 312 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDP----DLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI 312 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH
Confidence 34444444557888888888888888776555443 34444444443 1 356777777666655221
Q ss_pred hhChhhHHHHHHHHHHHHhcCC--chHHHHHHHHHH---HHHHHHhChHH---HhhhhHHHHHhhhc--------CCChH
Q 006898 427 QLGVGFFDDKLGALCMQWLQDK--VYSIRDAAANNL---KRLAEEFGPEW---AMQHITPQVLEMIN--------NPHYL 490 (626)
Q Consensus 427 ~~~~~~~~~~l~p~l~~~l~d~--~~~VR~~a~~~l---~~l~~~~~~~~---~~~~il~~l~~~l~--------~~~~~ 490 (626)
.....+.++.++...+.++ +..+|..+...+ .......+... ..+.++..+...+. ..+..
T Consensus 313 ---Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~ 389 (501)
T PF13001_consen 313 ---AATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIE 389 (501)
T ss_pred ---HHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHH
Confidence 1112245666777777777 678888888888 77777766652 22444444444452 23677
Q ss_pred HHHHHHHHHHHhccccChHHh-hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc
Q 006898 491 YRMTILRAISLLAPVMGSEIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (626)
Q Consensus 491 vR~~a~~~l~~i~~~~~~~~~-~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~ 548 (626)
.|..+.+++|.+++..+.-+. .-.++..|...+.++.+++|.+.-++|..+...+...
T Consensus 390 lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~ 448 (501)
T PF13001_consen 390 LRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDL 448 (501)
T ss_pred HHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999987665431 2346667777779999999999999999999988653
No 142
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.71 E-value=0.093 Score=61.78 Aligned_cols=273 Identities=12% Similarity=0.151 Sum_probs=160.5
Q ss_pred chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-h-----hhhhhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHH
Q 006898 198 HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-Q-----DCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCE 270 (626)
Q Consensus 198 ~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~-----~~~~~i~~~l~~-~~~d~~~~vR~~a~~~l~~l~~ 270 (626)
..|..+-+++.....+++..++..|+..|..++-.+-+ + .+.+.++..+.. +....+..+|...++++..+..
T Consensus 1133 ~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~ 1212 (1780)
T PLN03076 1133 SIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVL 1212 (1780)
T ss_pred hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34555666677765555677889999988887754433 2 233444444444 4456677999999999998887
Q ss_pred HhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh------HHHHHhhHHHHHHhccCC-CHHHHHHHHH
Q 006898 271 AVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ELAIQHILPCVKELSSDS-SQHVRSALAS 341 (626)
Q Consensus 271 ~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~d~-~~~vr~~~~~ 341 (626)
..+... .-..++.++-....++++.+-..|.+.+..+....-. ......++..+.++.+.. +..+--.++.
T Consensus 1213 s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~ 1292 (1780)
T PLN03076 1213 SRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIA 1292 (1780)
T ss_pred HHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHH
Confidence 665432 2245667776667788888888888888877653211 122245556666655432 2333333444
Q ss_pred HHHhhhhhh-----------------------------------cHHHHHHhHHHHHHHh---hcCCCHHHHHHHHHhhH
Q 006898 342 VIMGMAPLL-----------------------------------GKDATIEQLLPIFLSL---LKDEFPDVRLNIISKLD 383 (626)
Q Consensus 342 ~l~~l~~~~-----------------------------------~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~L~ 383 (626)
.+..++..+ +.+......+|.+..+ ..|+.++||..|+..|-
T Consensus 1293 lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF 1372 (1780)
T PLN03076 1293 FLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLF 1372 (1780)
T ss_pred HHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 444332111 0111123455665544 56899999999999988
Q ss_pred HHHhhhchh----hH----HhhHHHHHHHHhc----------------------CCChHHHHHHHHHHHHHHHhhChhh-
Q 006898 384 QVNQVIGID----LL----SQSLLPAIVELAE----------------------DRHWRVRLAIIEYIPLLASQLGVGF- 432 (626)
Q Consensus 384 ~~~~~~~~~----~~----~~~i~~~l~~~~~----------------------~~~~~~r~~~~~~l~~l~~~~~~~~- 432 (626)
.+....|.. .+ ...++|.+..+-. +.+......+..++..+...+..-+
T Consensus 1373 ~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd 1452 (1780)
T PLN03076 1373 DTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYP 1452 (1780)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766643 22 2234444333210 0011234555555555555443221
Q ss_pred ----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 433 ----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 433 ----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
..+.++..+..+...++..+-..+..|+..++...|..
T Consensus 1453 ~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076 1453 TVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 22445555666667778888888999999998876653
No 143
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.054 Score=55.56 Aligned_cols=143 Identities=22% Similarity=0.203 Sum_probs=62.1
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc-------chHHHHHHhcCCChHHHHHHHHHhHHHHHHhh---
Q 006898 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-------DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL--- 311 (626)
Q Consensus 242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~-------~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--- 311 (626)
.-|.+.+.+.-++..||..|+..+-.+....+.+...+ .=...+..+++|+-|.||..|+..+.++...+
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666655544444332111 12233344555555555555555555444322
Q ss_pred -ChHHHHHhhHHH-HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q 006898 312 -NPELAIQHILPC-VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (626)
Q Consensus 312 -~~~~~~~~l~~~-l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~ 385 (626)
++..+ ..++.. +-.+..|....||.+..+.+..+...-..-...++++|.+-..+.|....||.++..-|..+
T Consensus 255 iP~~i~-~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 255 IPPTIL-IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred cCHHHH-HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 11111 112111 11233344444454444444444322212222334444444444444444444444444443
No 144
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.015 Score=65.41 Aligned_cols=290 Identities=15% Similarity=0.109 Sum_probs=158.4
Q ss_pred hhcCcchHHHHHHHHHHHHHHhhcChh---------hHHHhHHHHHHHHhcC--CccchhHHHhhHhHHhc-----C-CC
Q 006898 94 LCTVEETCVRDKAVESLCRIGSQMRES---------DLVDWYIPLVKRLAAG--EWFTARVSACGLFHIAY-----P-SA 156 (626)
Q Consensus 94 l~~~~~~~vR~~a~~~l~~i~~~~~~~---------~~~~~l~~~l~~l~~~--~~~~~r~~a~~~l~~~~-----~-~~ 156 (626)
++.+++..||-..+-|+..|.+-+.|+ ++...++..+..+..- +.+..+..-.+-+..+. . .-
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 456788889998888888888877652 1222233333333322 23334433333332222 1 11
Q ss_pred ChHHHHHHHHHHHHhcCCCCHH-HHHHHHHhHHHHHHhhCccchhhhHHHHHHHhh----cCCchhHHHHHHHHHHHhhc
Q 006898 157 PDILKTELRSIYTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT----QDDQDSVRLLAVEGCAALGK 231 (626)
Q Consensus 157 ~~~~~~~l~~~l~~l~~d~~~~-vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~----~d~~~~vr~~a~~~l~~l~~ 231 (626)
.++...++...+..+..++.+. |=. ....+..+.... +....+++..+..-+ .|....-+..|-..+...+.
T Consensus 138 ~~e~~~~~f~~f~d~~~~~~~~~v~~-~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~ 214 (1266)
T KOG1525|consen 138 CQELVHELFRTFFDLARKGHPKKVFN-MLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCAD 214 (1266)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhh
Confidence 2356677777777777555433 322 222222222211 233344444433322 23334444444444444433
Q ss_pred ccCch-----------------------------------hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 006898 232 LLEPQ-----------------------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (626)
Q Consensus 232 ~~~~~-----------------------------------~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~ 276 (626)
..... .....++|.+..-+...+..+|..|...+|.+....+...
T Consensus 215 ~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l 294 (1266)
T KOG1525|consen 215 NLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQL 294 (1266)
T ss_pred hhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhh
Confidence 32210 1122356777666777788899999999988876544433
Q ss_pred c--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH
Q 006898 277 T--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA 354 (626)
Q Consensus 277 ~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~ 354 (626)
. ...+...++..+.|..++||..+++....+.-..+...-...+.-.+.....|.+.++|..++-...... .+.-..
T Consensus 295 ~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~-~~~l~~ 373 (1266)
T KOG1525|consen 295 SETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVM-KFKLVY 373 (1266)
T ss_pred cccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehh-Hhhhhh
Confidence 3 4567888888889999999999998887776542222111223333444445555555543321100000 001111
Q ss_pred HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhh
Q 006898 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (626)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~ 388 (626)
... ++..+...+.|....||..|+..|..+.+.
T Consensus 374 ~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 374 IPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 222 666677778899999999999999998873
No 145
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.1 Score=54.11 Aligned_cols=143 Identities=9% Similarity=0.071 Sum_probs=101.5
Q ss_pred hhHHHHHHHHhc-----C---CChHHHHHHHHHHHHHHHhhC-----hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006898 396 QSLLPAIVELAE-----D---RHWRVRLAIIEYIPLLASQLG-----VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 462 (626)
Q Consensus 396 ~~i~~~l~~~~~-----~---~~~~~r~~~~~~l~~l~~~~~-----~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~ 462 (626)
+.+++.+...++ + ++.+-...++..++.+..... ...+...+++.+...++++..-+|..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 667887777762 1 356777778888888877332 123345677888888899999999999999999
Q ss_pred HHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH----HhhhcHHHHHhhhCCCCCchHHHHHHHHH
Q 006898 463 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVL 538 (626)
Q Consensus 463 l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l 538 (626)
+...+........+.....+++++..-.++..|+-|+.-+...-... ...+..+..|+.+.++-+.++-....+.+
T Consensus 487 ~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~f 566 (970)
T COG5656 487 IEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESF 566 (970)
T ss_pred HHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHH
Confidence 97777666566677777788888888889999999999887543221 13345566666777776666655555444
No 146
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.032 Score=62.80 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=97.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHh
Q 006898 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM 473 (626)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~ 473 (626)
-.++|.|..-+...+..+|..++..++.+....+...+ .+.+...++..+.|...+||..+++....+..........
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 45788888878888999999999999998876554443 3456777888899999999999999988887653221111
Q ss_pred hhhHHHHHhhhcCCChHHHHHHHHHHHHhcc-ccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898 474 QHITPQVLEMINNPHYLYRMTILRAISLLAP-VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 474 ~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~-~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 544 (626)
..+.-.+. ..|.++.+|....-.++.+.. ......... ++..+...+.|+-+.||..|+..|..+...
T Consensus 338 ~~~~~~l~--~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 338 STILLALR--ERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHH--hhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 11222222 244455555443332222111 011111223 777788888999999999999999999885
No 147
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0074 Score=59.93 Aligned_cols=277 Identities=13% Similarity=0.028 Sum_probs=135.3
Q ss_pred hHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHH
Q 006898 147 GLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGC 226 (626)
Q Consensus 147 ~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l 226 (626)
-.++.+...++.+..+.+++.+...-+...+.+...++-.+|-..-.-. -.+++..+.+++.++..-.-.++...+
T Consensus 395 yalGLI~Agfgr~~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSa----n~eiye~lKe~l~nD~a~~geAa~~gM 470 (926)
T COG5116 395 YALGLIKAGFGREDTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSA----NREIYEKLKELLKNDRALLGEAAVYGM 470 (926)
T ss_pred eeehhhccCcCcccHHHHHHHhCcccccccHHHHHHHHhhhcchhcccc----cHHHHHHHHHHHhcchhhhhhhhhhcc
Confidence 3444444455555555555444333222245666666665554432211 134666666666655544444444444
Q ss_pred HHhhcccCchhhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 006898 227 AALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305 (626)
Q Consensus 227 ~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 305 (626)
+-+.-.... ...+.-+...... ...++.+...-.+.-+. +|.+ +..-.++-+++.|.++-.|-+.+-+++
T Consensus 471 Gl~mLgt~s----~eai~dm~tya~ETqhe~i~Rglgig~aLi~--ygrq---e~add~I~ell~d~ds~lRy~G~fs~a 541 (926)
T COG5116 471 GLLMLGTWS----VEAIEDMRTYAGETQHERIKRGLGIGFALIL--YGRQ---EMADDYINELLYDKDSILRYNGVFSLA 541 (926)
T ss_pred ceeeecCCC----HHHHHHHHHHhcchhhhhHHhhhhhhhhHhh--hhhH---HHHHHHHHHHhcCchHHhhhccHHHHH
Confidence 332221111 1122222222211 12233333322222221 2221 112234446667777777776655554
Q ss_pred HHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc-CCCHHHHHHHHHhhHH
Q 006898 306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQ 384 (626)
Q Consensus 306 ~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~L~~ 384 (626)
.----.|...+...+++ -..+|.+..||+++.-+++.++-. ....++-....|. ..++.||.+.+-+|+-
T Consensus 542 lAy~GTgn~~vv~~lLh---~avsD~nDDVrRAAViAlGfvc~~------D~~~lv~tvelLs~shN~hVR~g~AvaLGi 612 (926)
T COG5116 542 LAYVGTGNLGVVSTLLH---YAVSDGNDDVRRAAVIALGFVCCD------DRDLLVGTVELLSESHNFHVRAGVAVALGI 612 (926)
T ss_pred HHHhcCCcchhHhhhhe---eecccCchHHHHHHHHheeeeEec------CcchhhHHHHHhhhccchhhhhhhHHHhhh
Confidence 32222222222222222 125677778888877777666521 1233444455554 4467788888778877
Q ss_pred HHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCc
Q 006898 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKV 449 (626)
Q Consensus 385 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~ 449 (626)
.+...|.. ..+..+..+..|++..+|..++-+++.+.-++.++.. ...+...+.+.+.|+.
T Consensus 613 acag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 613 ACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred hhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 77666653 3445556666777777888877777777665544321 1234444555555443
No 148
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.52 E-value=0.00018 Score=42.12 Aligned_cols=29 Identities=45% Similarity=0.535 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhHHHHHH
Q 006898 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (626)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~ 192 (626)
++|.+.++++|++++||.+++.+++.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35666666667777777777777666655
No 149
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.48 E-value=0.00023 Score=41.64 Aligned_cols=28 Identities=36% Similarity=0.394 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 006898 438 GALCMQWLQDKVYSIRDAAANNLKRLAE 465 (626)
Q Consensus 438 ~p~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (626)
+|.+.++++|+++.||.+|+.+++.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555543
No 150
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.0026 Score=67.56 Aligned_cols=222 Identities=16% Similarity=0.069 Sum_probs=141.1
Q ss_pred hhhhcccccc-ccCCchHHHHHHHHHHhccccccCC----cchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcCh-
Q 006898 46 RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG----VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE- 119 (626)
Q Consensus 46 ~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~- 119 (626)
.++=+|.+.+ +.+ --.|..|...|+.|... |. -...-.|.|+..+|++++..+.|..-+-.+.+|...=+.
T Consensus 470 PPeQLPiVLQVLLS--QvHRlRAL~LL~RFLDl-GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SC 546 (1387)
T KOG1517|consen 470 PPEQLPIVLQVLLS--QVHRLRALVLLARFLDL-GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSC 546 (1387)
T ss_pred ChHhcchHHHHHHH--HHHHHHHHHHHHHHhcc-chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchh
Confidence 3344555555 222 12366777788877663 21 112346889999999999888888766666665442221
Q ss_pred --hhHHHhHHHHHHHHhcC-C--ccchhHHHhhHhHHhcCCCChH----HHHHHHHHHHHhcCCC-CHHHHHHHHHhHHH
Q 006898 120 --SDLVDWYIPLVKRLAAG-E--WFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDD-MPMVRRSAASNLGK 189 (626)
Q Consensus 120 --~~~~~~l~~~l~~l~~~-~--~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~-~~~vR~~a~~~l~~ 189 (626)
+.+.+....++.+.+.+ . .++.|..++-+++.+..++... ...+++.+++..++|+ .+-.|+-++-+||.
T Consensus 547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~ 626 (1387)
T KOG1517|consen 547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGR 626 (1387)
T ss_pred HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 11111111111111222 2 2468889999999998887543 3367888888888884 69999999999999
Q ss_pred HHHhhCcc---chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc---h---hh------------hhhhHH----
Q 006898 190 FAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---Q---DC------------VAHILP---- 244 (626)
Q Consensus 190 l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~---~~------------~~~i~~---- 244 (626)
+-+.+... .........+..++.|+.++||.+|+.+|+.+...... + .. .+..++
T Consensus 627 LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~ 706 (1387)
T KOG1517|consen 627 LWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLM 706 (1387)
T ss_pred HhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHH
Confidence 98877652 22334556677789999999999999999999886422 0 00 011111
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006898 245 VIVNFSQDKSWRVRYMVANQLYELCE 270 (626)
Q Consensus 245 ~l~~~~~d~~~~vR~~a~~~l~~l~~ 270 (626)
.+..+.+|.++.||...+.++..++.
T Consensus 707 ~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 707 SLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHH
Confidence 34455677777777777777766654
No 151
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.46 E-value=0.071 Score=49.84 Aligned_cols=149 Identities=12% Similarity=0.039 Sum_probs=70.8
Q ss_pred HHhhcCCchhHHHHHHHHHHHhhcccCchh----hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 006898 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP 283 (626)
Q Consensus 208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~ 283 (626)
...+.++++.+|..|+..|..+.+.++++. ....++.++...+.|. ..+..+ +.++..+... . ....+....
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~-~-~~~~~~~~~ 80 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKM-K-NFSPESAVK 80 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhC-c-CCChhhHHH
Confidence 345677788888888888888877777532 2334455555555432 223333 5666655522 1 111111222
Q ss_pred HHHHhcCC-----ChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHh-ccCCCHHHHHHHHHHHHhhhhhhcHHHH
Q 006898 284 AYVRLLRD-----NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDAT 355 (626)
Q Consensus 284 ~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 355 (626)
.+..++++ --...|..+.+.+..+.+..... ...+.++..+.+. -+.++|+--..+.+.+..+...+.-..+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~ 160 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF 160 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence 22222221 11456666666666665542211 1112223333332 3445666555555555555554443333
Q ss_pred HHhHH
Q 006898 356 IEQLL 360 (626)
Q Consensus 356 ~~~l~ 360 (626)
.+.+.
T Consensus 161 ~e~lF 165 (262)
T PF14500_consen 161 AEDLF 165 (262)
T ss_pred HHHHH
Confidence 33333
No 152
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.34 Score=54.75 Aligned_cols=151 Identities=14% Similarity=0.195 Sum_probs=99.5
Q ss_pred hhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHh--hC-hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH
Q 006898 396 QSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQ--LG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (626)
Q Consensus 396 ~~i~~~l~~~~-~~~~~~~r~~~~~~l~~l~~~--~~-~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~ 471 (626)
..++..+..+. .+.+|++|.+.+..+...... ++ .+.-.+.+...+...+.|.+..||+.|+.+|..+...-.-..
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence 44555555443 456799999999998876542 33 223346688889999999999999999999999876422111
Q ss_pred HhhhhHHHHHh-h-hcCCChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 472 AMQHITPQVLE-M-INNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 472 ~~~~il~~l~~-~-l~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
. +........ . ....+...+.+++.++|.++-.++-. .+..+.+-.+.....++ ..++..+-+++.++-.....
T Consensus 1605 ~-~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1605 V-SDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred c-hHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhhh
Confidence 1 111122222 2 23345566788888999887655421 24555555666666666 77899999999988776544
Q ss_pred c
Q 006898 548 S 548 (626)
Q Consensus 548 ~ 548 (626)
.
T Consensus 1683 ~ 1683 (1710)
T KOG1851|consen 1683 T 1683 (1710)
T ss_pred h
Confidence 3
No 153
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.44 E-value=0.054 Score=52.29 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=95.2
Q ss_pred HhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-----------c
Q 006898 209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-----------T 277 (626)
Q Consensus 209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-----------~ 277 (626)
..+.++++.+|..|+++++-.+-.-. ......++.+...++..+..+|..+++++..+....|.+. .
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 45666666777777777765543222 1223334444444444467777777777777766665332 1
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHH--hhCh-HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc--H
Q 006898 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR--ILNP-ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--K 352 (626)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~--~~~~-~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--~ 352 (626)
...+...+...+.+.++++|..+++++.++.- .+.. ..+...++-....-....+.++|+...-++...+..-. +
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q 191 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQ 191 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHH
Confidence 23577788888888899999999999998654 2333 33333333222222334567888888877777765332 2
Q ss_pred HHHHHhHHHHHHHhhcC
Q 006898 353 DATIEQLLPIFLSLLKD 369 (626)
Q Consensus 353 ~~~~~~l~~~l~~~l~d 369 (626)
+...+.++|.+..+.+.
T Consensus 192 ~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 192 ERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 33445566666665543
No 154
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.012 Score=59.94 Aligned_cols=142 Identities=23% Similarity=0.241 Sum_probs=63.8
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHH---hH----HHHHHHhhcCCCHHHHHHHHHhhHHHHhhh----c
Q 006898 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE---QL----LPIFLSLLKDEFPDVRLNIISKLDQVNQVI----G 390 (626)
Q Consensus 322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l----~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~----~ 390 (626)
|.+-+.++-+|..||..++..+-.+....+++...+ .+ ...+.++|.|+.+.||..|...+..+...+ +
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 333444455555666665555555555555543211 11 223445555555666655555555443332 1
Q ss_pred hhhHHhhHHHHH-HHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898 391 IDLLSQSLLPAI-VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 391 ~~~~~~~i~~~l-~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
+..+ ..++..+ -.+..|....+|.+..+.+..++..-......++++|.+-..+.|+...||-+++..+..+-
T Consensus 257 ~~i~-~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 257 PTIL-IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHH-HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 1111 1111111 11223444455555555555554332222233445555555555555555555555554443
No 155
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0065 Score=55.91 Aligned_cols=168 Identities=11% Similarity=0.084 Sum_probs=115.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhh
Q 006898 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ 474 (626)
Q Consensus 398 i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~ 474 (626)
.+......+.+.+|.....++..+..++.... +... ..++..+.+-+......|-.+|+.+++.++..++.... +
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~-~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID-Q 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34444556678889999988888888876544 2222 33455566667888889999999999999999887632 2
Q ss_pred hhHHHHHhhh---cCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc---
Q 006898 475 HITPQVLEMI---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--- 548 (626)
Q Consensus 475 ~il~~l~~~l---~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--- 548 (626)
.+-..+..++ ...+.-+|..+-.++..++.+..+.. +++.|...+...++.+|..++.++.+....+|-.
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~----~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~ 242 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK----LLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVL 242 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH----HHHHHHHHHhhhchhhhhhhhccccccceeccccchh
Confidence 2223333333 34577799999999999998887764 4555555577889999999999999888777632
Q ss_pred -hhhhcccchHHhhhccCCCccccc
Q 006898 549 -VSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 549 -~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
++.....+.+. .-..|.=+..+.
T Consensus 243 ~~~~~dl~~a~~-~~~~d~Lp~~~~ 266 (334)
T KOG2933|consen 243 LQGSCDLSRAAQ-EQGSDKLPELRE 266 (334)
T ss_pred hHhHHHHHHHHH-hhhccccccccc
Confidence 22223345555 455666666665
No 156
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.36 E-value=0.29 Score=57.91 Aligned_cols=290 Identities=13% Similarity=0.139 Sum_probs=169.4
Q ss_pred HHHHHHHHHHhhcccCc------hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC-c-----cccchHHHHH
Q 006898 219 RLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-P-----TRMDLVPAYV 286 (626)
Q Consensus 219 r~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~-----~~~~l~~~l~ 286 (626)
|..++.-+..++..--. ..+|..+-+++.....+++..++..++..|.+++..+-.. . +.++++..|.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 55566666655544322 2345556666666655666778899988888888765322 1 2234555555
Q ss_pred Hhc-CCChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh-hc---H--HHHHH
Q 006898 287 RLL-RDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL-LG---K--DATIE 357 (626)
Q Consensus 287 ~~l-~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~-~~---~--~~~~~ 357 (626)
..+ +..+.++|+..++++..+....+.. .-++.++..+.....++++.+-..+.+.+..+... ++ . .....
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence 544 4556799999999999988765543 12455666666566777777777777777766532 22 1 11223
Q ss_pred hHHHHHHHhhcCC-CHHHHHHHHHhhHHHHhhh-----------------------------------chh---hHHhhH
Q 006898 358 QLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVI-----------------------------------GID---LLSQSL 398 (626)
Q Consensus 358 ~l~~~l~~~l~d~-~~~vr~~a~~~L~~~~~~~-----------------------------------~~~---~~~~~i 398 (626)
.++..+..+.+.. +.++-..|+..|..+...+ +.+ .+.-.+
T Consensus 1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076 1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 4444444444322 3455555555555442221 000 011124
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh--------HHHHHHHHHHHHhc----------------------CC
Q 006898 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--------FDDKLGALCMQWLQ----------------------DK 448 (626)
Q Consensus 399 ~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~--------~~~~l~p~l~~~l~----------------------d~ 448 (626)
+..+.++..|+...||..|++.+-.+....|..+ +...+.|++-.+-. +.
T Consensus 1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 4445556778899999999999888877666432 23345555433210 11
Q ss_pred chHHHHHHHHHHHHHHHHhChHH-----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh
Q 006898 449 VYSIRDAAANNLKRLAEEFGPEW-----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (626)
Q Consensus 449 ~~~VR~~a~~~l~~l~~~~~~~~-----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~ 508 (626)
..++.+....++..++..+...+ ..+.++..+..++..+|...-..+..|+.+++...|.
T Consensus 1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 22456666666666666554321 2234444444556778888888889999988765554
No 157
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.30 E-value=0.28 Score=50.64 Aligned_cols=125 Identities=12% Similarity=0.065 Sum_probs=67.2
Q ss_pred HHHHHhHHHHHHh--hChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc------C
Q 006898 298 IAAAGKVTKFCRI--LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK------D 369 (626)
Q Consensus 298 ~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d 369 (626)
..++..+..+... ++.+.+ ..++..|.....-. .....+-+.+..++...- ....+..+...+. .
T Consensus 195 ~~~L~vldaii~y~~iP~~sl-~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~----g~~~i~~L~~iL~~~~~~~~ 267 (464)
T PF11864_consen 195 EACLSVLDAIITYGDIPSESL-SPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHL----GHSAIRTLCDILRSPDPQNK 267 (464)
T ss_pred HHHHHHHHHHHHcCcCChHHH-HHHHHHHhhHhccc--ccchhHHHHHHHHHcCcc----HHHHHHHHHHHHcccCcccc
Confidence 5666666666552 233222 33333343332211 333334444555543211 1223344455552 2
Q ss_pred CCHHHHHHHHHhhHHHHhhhchhhHH------hhHHHHHHHHhcCCChHHHHHHHHHHHHHH-HhhC
Q 006898 370 EFPDVRLNIISKLDQVNQVIGIDLLS------QSLLPAIVELAEDRHWRVRLAIIEYIPLLA-SQLG 429 (626)
Q Consensus 370 ~~~~vr~~a~~~L~~~~~~~~~~~~~------~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~-~~~~ 429 (626)
++..+-.+|+..++.+.-..|.+.+. ..++|.+...++.++.++-...+..+..+. +.++
T Consensus 268 ~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~ 334 (464)
T PF11864_consen 268 RDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYG 334 (464)
T ss_pred ccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhh
Confidence 34566678888888776554333221 238899999888888888878887777777 4444
No 158
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.27 E-value=0.29 Score=50.38 Aligned_cols=148 Identities=11% Similarity=0.008 Sum_probs=110.8
Q ss_pred hChhhHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhh-cCCChHHHHHHHHHHHHh
Q 006898 428 LGVGFFDDKLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLL 502 (626)
Q Consensus 428 ~~~~~~~~~l~p~l~~~l~d----~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~a~~~l~~i 502 (626)
+|.......+.|++...... +++.+..+|.-+|..+.-.- .+ +..+=+|.++..+ ++|+|.+|.+++-++|.+
T Consensus 884 yGeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS-~~-fc~ehlpllIt~mek~p~P~IR~NaVvglgD~ 961 (1128)
T COG5098 884 YGEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLS-FE-FCSEHLPLLITSMEKHPIPRIRANAVVGLGDF 961 (1128)
T ss_pred hchhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHh-HH-HHHHHHHHHHHHHhhCCCcceeccceeecccc
Confidence 45555666778888777665 78889999988888775432 22 3455678887755 589999999999999987
Q ss_pred ccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCcccccccccCchhHH
Q 006898 503 APVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLF 582 (626)
Q Consensus 503 ~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~ 582 (626)
.-.+. .+.++.-.+|...+.|.+..||..+..++..++.. |. .-...-++.+. +++.|+|.++.. .
T Consensus 962 ~vcfN--~~~de~t~yLyrrL~De~~~V~rtclmti~fLila-gq-~KVKGqlg~ma-~~L~deda~Isd---------m 1027 (1128)
T COG5098 962 LVCFN--TTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-GQ-LKVKGQLGKMA-LLLTDEDAEISD---------M 1027 (1128)
T ss_pred ceehh--hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-cc-eeeccchhhhH-hhccCCcchHHH---------H
Confidence 65443 24566778899999999999999999999988755 22 22245577888 899999999999 7
Q ss_pred HHHHHHHHH
Q 006898 583 SCLALNYCH 591 (626)
Q Consensus 583 a~~al~~~~ 591 (626)
|..-+..++
T Consensus 1028 ar~fft~~a 1036 (1128)
T COG5098 1028 ARHFFTQIA 1036 (1128)
T ss_pred HHHHHHHHH
Confidence 777665553
No 159
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0081 Score=55.28 Aligned_cols=172 Identities=13% Similarity=0.122 Sum_probs=116.7
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc
Q 006898 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD 280 (626)
Q Consensus 203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 280 (626)
.+......+.+++|+....++..+..++.+-++ ......++..+.+-+.++...|-++++.+++.+...++..... .
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-~ 167 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-E 167 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 344445556777888888888888877766554 2234456666677788888889999999999999887755432 2
Q ss_pred hHHHHHHhc---CCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH----H
Q 006898 281 LVPAYVRLL---RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----D 353 (626)
Q Consensus 281 l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~----~ 353 (626)
+-..+..++ .+.+.-||+.|-++|..+.....+......++|. +.+.++++|..++.++......+|. .
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~----~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPI----LQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHH----Hhhhchhhhhhhhccccccceeccccchhh
Confidence 222223333 3455789999999999999988877665555555 5778889999888877777666652 2
Q ss_pred HHHHhHHHHHHHhhcCCCHHHHHHHH
Q 006898 354 ATIEQLLPIFLSLLKDEFPDVRLNII 379 (626)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~ 379 (626)
.+...+.+.+..-..|.-+.+|.+|-
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~ 269 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAAR 269 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccchh
Confidence 23445556666666777666665443
No 160
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.20 E-value=0.093 Score=56.89 Aligned_cols=202 Identities=16% Similarity=0.166 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhccc-Cc-hhh
Q 006898 162 TELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EP-QDC 238 (626)
Q Consensus 162 ~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~-~~~ 238 (626)
++|..++..+... .....|.....++..... ..-+..+.+++...+-.- ..+...+..+.... .+ ...
T Consensus 362 ~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT--------~~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt~e~ 432 (618)
T PF01347_consen 362 EDLEELYKQLKSKSKKEQARKIFLDALPQAGT--------NPAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPTEEL 432 (618)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHHHHHHHH-S--------HHHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----HHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCCHHH
Confidence 3344444333322 356677777777766433 122233344444322111 12344454444443 22 333
Q ss_pred hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC------------ccccchHHHHHHhc----CCChHHHHHHHHH
Q 006898 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE------------PTRMDLVPAYVRLL----RDNEAEVRIAAAG 302 (626)
Q Consensus 239 ~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~------------~~~~~l~~~l~~~l----~d~~~~vr~~a~~ 302 (626)
...+.+.+..-....+..+|.+++-+++.+....... ...+.+++.+...+ +..+.+.+..+++
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 3334443332222346779999999999887654222 22334555555444 3455677788888
Q ss_pred hHHHHHHhhChHHHHHhhHHHHHHhccCC---CHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC--CCHHHHHH
Q 006898 303 KVTKFCRILNPELAIQHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLN 377 (626)
Q Consensus 303 ~l~~l~~~~~~~~~~~~l~~~l~~l~~d~---~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~ 377 (626)
+|+.++. ...++.+...+.+. ...+|.+|+.++..+.... .+.+.+.+...+.| +++++|.+
T Consensus 513 aLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-----~~~v~~~l~~I~~n~~e~~EvRia 579 (618)
T PF01347_consen 513 ALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-----PEKVREILLPIFMNTTEDPEVRIA 579 (618)
T ss_dssp HHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT------HHHHHHHHHHHHH-TTS-HHHHHH
T ss_pred HhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-----cHHHHHHHHHHhcCCCCChhHHHH
Confidence 8887754 34566666666555 6788999998888775433 22344455555543 45789988
Q ss_pred HHHhhHHH
Q 006898 378 IISKLDQV 385 (626)
Q Consensus 378 a~~~L~~~ 385 (626)
|...|-..
T Consensus 580 A~~~lm~~ 587 (618)
T PF01347_consen 580 AYLILMRC 587 (618)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 87766553
No 161
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.09 E-value=0.031 Score=60.57 Aligned_cols=159 Identities=19% Similarity=0.148 Sum_probs=94.4
Q ss_pred hhHHHHHHHHhcC----CChHHHHHHHHHHHHHHHhhChh------------h----HHHHHHHHHHHHhcCCchHHHHH
Q 006898 396 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVG------------F----FDDKLGALCMQWLQDKVYSIRDA 455 (626)
Q Consensus 396 ~~i~~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~~~~------------~----~~~~l~p~l~~~l~d~~~~VR~~ 455 (626)
..++..+..+++. .+..++..++-+++.+....... . +.+.+...+.......+..-+..
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 3455555555543 35678888888888887654222 1 22334444444455667788888
Q ss_pred HHHHHHHHHHHhChHHHhhhhHHHHHhhhcCC---ChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHH
Q 006898 456 AANNLKRLAEEFGPEWAMQHITPQVLEMINNP---HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKF 532 (626)
Q Consensus 456 a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~---~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~ 532 (626)
++++||.+.. ...++.+...+.+. ...+|..|+.++..++..+. +...+.++|.+..- ..+.+||.
T Consensus 510 ~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-~~v~~~l~~I~~n~--~e~~EvRi 578 (618)
T PF01347_consen 510 YLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-EKVREILLPIFMNT--TEDPEVRI 578 (618)
T ss_dssp HHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-HHHHHHHHHHHH-T--TS-HHHHH
T ss_pred HHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-HHHHHHHHHHhcCC--CCChhHHH
Confidence 8888887742 34677777776655 67899999999998865443 33455555555542 33467999
Q ss_pred HHHHHHHHHHhhhccchhhhcccchHHhhhccCCCccccc
Q 006898 533 NVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 533 ~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
+|...|-..-.. ..++..+...+..|++..|+.
T Consensus 579 aA~~~lm~~~P~-------~~~l~~i~~~l~~E~~~QV~s 611 (618)
T PF01347_consen 579 AAYLILMRCNPS-------PSVLQRIAQSLWNEPSNQVAS 611 (618)
T ss_dssp HHHHHHHHT----------HHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHhcCCC-------HHHHHHHHHHHhhCchHHHHH
Confidence 998777664322 123333332667888888888
No 162
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.05 E-value=0.044 Score=58.70 Aligned_cols=159 Identities=17% Similarity=0.132 Sum_probs=97.2
Q ss_pred hhHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHhhCh------hhHHHHHHHHHHH----HhcCCchHHHHHHHHHHH
Q 006898 396 QSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQ----WLQDKVYSIRDAAANNLK 461 (626)
Q Consensus 396 ~~i~~~l~~~~~~~----~~~~r~~~~~~l~~l~~~~~~------~~~~~~l~p~l~~----~l~d~~~~VR~~a~~~l~ 461 (626)
..++..+..+++++ +..+|..++-+++.+...... ....+.+.|.+.. ...+.+...+....++||
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 45666777776643 567888999999988874321 1122344444444 344556667777888887
Q ss_pred HHHHHhChHHHhhhhHHHHHhhhc---CCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHH
Q 006898 462 RLAEEFGPEWAMQHITPQVLEMIN---NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL 538 (626)
Q Consensus 462 ~l~~~~~~~~~~~~il~~l~~~l~---~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l 538 (626)
.+... ..++.+...+. .....+|..|+.++..++...... ..+.+++.+.. .+.+++||..|+..|
T Consensus 472 N~g~~--------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n--~~e~~EvRiaA~~~l 540 (574)
T smart00638 472 NAGHP--------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLN--RAEPPEVRMAAVLVL 540 (574)
T ss_pred ccCCh--------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcC--CCCChHHHHHHHHHH
Confidence 66422 22333333332 345789999999999887655433 44555555533 345678999998888
Q ss_pred HHHHhhhccchhhhcccchHHhhhccCCCccccc
Q 006898 539 QSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 539 ~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
-..-.. ...+..+...+..|++..|+.
T Consensus 541 m~t~P~-------~~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 541 METKPS-------VALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HhcCCC-------HHHHHHHHHHHhhcCcHHHHH
Confidence 764322 123333332666788888887
No 163
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.04 E-value=0.035 Score=54.77 Aligned_cols=126 Identities=16% Similarity=0.239 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhc------CCChHHHHHHHHHHHHhccccC---------------
Q 006898 449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVMG--------------- 507 (626)
Q Consensus 449 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~------~~~~~vR~~a~~~l~~i~~~~~--------------- 507 (626)
...-|.+|+..+..+++..+... ...+...+..+++ ..+|+-+.+|+..++.++....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 35678899999999998876542 2222233333332 3589999999999999875442
Q ss_pred hHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCcccccccccCchhHHHHHHH
Q 006898 508 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLAL 587 (626)
Q Consensus 508 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al 587 (626)
.+++...++|.|. --.+..|-+|..|++.+..+...++.+ ....++|.+. .++.+++.-|+. ||+.|+
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~-~~L~~~~~vv~t---------yAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLV-NHLQSSSYVVHT---------YAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHH-HHTTSS-HHHHH---------HHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHH-HHhCCCCcchhh---------hhhhhC
Confidence 1245677888887 444566779999999999998887654 4457899999 999999999999 998764
No 164
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=0.015 Score=62.06 Aligned_cols=208 Identities=18% Similarity=0.114 Sum_probs=135.6
Q ss_pred chhHHHhhHhHHhcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhc
Q 006898 140 TARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQ 212 (626)
Q Consensus 140 ~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~ 212 (626)
..|..|..+++.+...-+=. .-=-|.|..+++++.+..+.|...+...+++...-+. +.+.+....++.+.+.
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 35777888888876543211 1124889999999999999999887777776554321 1122222234444455
Q ss_pred C-C--chhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCcc---ccchH
Q 006898 213 D-D--QDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPT---RMDLV 282 (626)
Q Consensus 213 d-~--~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~~---~~~l~ 282 (626)
+ + +++-|..|...|..+...+.. +-....++.+....++|+ .+-.|.=++-+||.+-+.+...-. ....-
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 4 2 458899999999999988754 233455666666667774 799999999999999776543211 12345
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHHhh----ChH--------------HHHHhhHH----HHHHhccCCCHHHHHHHH
Q 006898 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRIL----NPE--------------LAIQHILP----CVKELSSDSSQHVRSALA 340 (626)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~--------------~~~~~l~~----~l~~l~~d~~~~vr~~~~ 340 (626)
.-+..+++|+.++||.+|+-+|+.+.... ... ...+.+++ .+..+.+|.++-||..+.
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 56778889999999999999999998753 110 00122222 334455667777777666
Q ss_pred HHHHhhh
Q 006898 341 SVIMGMA 347 (626)
Q Consensus 341 ~~l~~l~ 347 (626)
.++..++
T Consensus 725 v~ls~~~ 731 (1387)
T KOG1517|consen 725 VALSHFV 731 (1387)
T ss_pred HHHHHHH
Confidence 6655543
No 165
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.97 E-value=0.071 Score=51.48 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=95.6
Q ss_pred HHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH----------
Q 006898 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---------- 433 (626)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~---------- 433 (626)
...+...++.||..++++||-++-. +.+. ....++.+...++..+..+|..+++++.-+.-..|...+
T Consensus 33 ~P~v~~~~~~vR~~al~cLGl~~Ll-d~~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~ 110 (298)
T PF12719_consen 33 LPAVQSSDPAVRELALKCLGLCCLL-DKEL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESV 110 (298)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHh-ChHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence 3455566666666666666655432 1111 233445555555445666666666666666655553332
Q ss_pred -HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHh-hhhHHHHHhhhcC----CChHHHHHHHHHHHHhccccC
Q 006898 434 -DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-QHITPQVLEMINN----PHYLYRMTILRAISLLAPVMG 507 (626)
Q Consensus 434 -~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~-~~il~~l~~~l~~----~~~~vR~~a~~~l~~i~~~~~ 507 (626)
...+...+.+.+.+.++++|..|++.+.++.-...- .. ..++..+.-..-+ ++...|+....++...+....
T Consensus 111 ~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i--~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~ 188 (298)
T PF12719_consen 111 DSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI--SDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSP 188 (298)
T ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCH
Confidence 245777888888888999999999999998754211 12 4556666554444 356777777777776665332
Q ss_pred --hHHhhhcHHHHHhhhCCCC
Q 006898 508 --SEITCSRLLPVVINASKDR 526 (626)
Q Consensus 508 --~~~~~~~~l~~l~~~l~d~ 526 (626)
.+.+.+..+|.+..+.+.+
T Consensus 189 ~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 189 ENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 2234556667777765443
No 166
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.69 Score=48.61 Aligned_cols=222 Identities=15% Similarity=0.122 Sum_probs=123.6
Q ss_pred HHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHH------HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cc
Q 006898 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE------LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AH 198 (626)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~------l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~ 198 (626)
.+..+.......++.+|..+++++..+..+-+.+.++- =+.-+..++.|....+|..++-.|..+.+..+. +.
T Consensus 123 ~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQK 202 (970)
T KOG0946|consen 123 NITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQK 202 (970)
T ss_pred hHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHH
Confidence 45556666677789999999999999999888765543 345677788899899999999999998876543 11
Q ss_pred h--hhhHHHHHHHhhcCC----chhHHHHHHHHHHHhhcccCc-hhh--hhhhHHHHHHh-----cCCC---CHHH-HHH
Q 006898 199 L--KTDIMSIFEDLTQDD----QDSVRLLAVEGCAALGKLLEP-QDC--VAHILPVIVNF-----SQDK---SWRV-RYM 260 (626)
Q Consensus 199 ~--~~~ll~~l~~l~~d~----~~~vr~~a~~~l~~l~~~~~~-~~~--~~~i~~~l~~~-----~~d~---~~~v-R~~ 260 (626)
. .+.+...+..++..+ .--|-.-|+..+.++.+.-.. +.+ ....+|-+.++ ..|. .|.. |..
T Consensus 203 lVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~ 282 (970)
T KOG0946|consen 203 LVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQ 282 (970)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHH
Confidence 0 111223333333322 225677788888887765432 211 12234444332 2342 3433 322
Q ss_pred HHHHHHHHHHH-hCCC------------ccccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCh--HHHH------
Q 006898 261 VANQLYELCEA-VGPE------------PTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNP--ELAI------ 317 (626)
Q Consensus 261 a~~~l~~l~~~-~~~~------------~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~--~~~~------ 317 (626)
-+...-.+.+. .... .....++..+...+-.+ ..+|+..++.+.+.+...... +.+.
T Consensus 283 Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~ 362 (970)
T KOG0946|consen 283 NVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPS 362 (970)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCC
Confidence 22222222222 1111 11235666666655443 357888888777776552211 0111
Q ss_pred -----HhhHHHHHHhccCC-CHHHHHHHHHHHHhhh
Q 006898 318 -----QHILPCVKELSSDS-SQHVRSALASVIMGMA 347 (626)
Q Consensus 318 -----~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~ 347 (626)
..++-.+..+..+. .+..|.++.-++..+.
T Consensus 363 ~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l 398 (970)
T KOG0946|consen 363 IPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL 398 (970)
T ss_pred CCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 12223334444443 4578888877776543
No 167
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.93 E-value=0.014 Score=50.61 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHH
Q 006898 102 VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 181 (626)
Q Consensus 102 vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~ 181 (626)
||..|..++..+++..++..+.+++--++-. .+...+ .. -.+++.-++.|++++||.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~----~~~~~~----------------~~---~~sLlt~il~Dp~~kvR~ 58 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPD----SVLQGR----------------PA---TPSLLTCILKDPSPKVRA 58 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCC----CCCcCC----------------CC---CcchhHHHHcCCchhHHH
Confidence 7999999999999997776555544333321 100000 00 112344566788888898
Q ss_pred HHHHhHHHHHHhhCcc------------ch----------hhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCch--
Q 006898 182 SAASNLGKFAATVEPA------------HL----------KTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ-- 236 (626)
Q Consensus 182 ~a~~~l~~l~~~~~~~------------~~----------~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~-- 236 (626)
+|+..+..+.+...+. .| .-++...+...+..+ +..+-...++++..+.+..+-.
T Consensus 59 aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL 138 (182)
T PF13251_consen 59 AAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL 138 (182)
T ss_pred HHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc
Confidence 8888888877643210 00 112333344444444 4566667788888777776643
Q ss_pred --hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006898 237 --DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (626)
Q Consensus 237 --~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~ 271 (626)
++.+.++..+...+.+.+..||..+..+++.+...
T Consensus 139 ~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 139 PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 33444555555666667777777777777766543
No 168
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=96.81 E-value=0.41 Score=45.86 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=71.2
Q ss_pred chhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhc-------
Q 006898 140 TARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ------- 212 (626)
Q Consensus 140 ~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~------- 212 (626)
..+..|.+.|+.++.++++ ...+.+..-+.+++|.+..||++|++.|..++.. ...+.+.+.+.++++
T Consensus 39 k~k~lasq~ip~~fk~fp~-la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLnk~sl~~L 113 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPS-LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLNKASLTGL 113 (460)
T ss_pred HHHHHHHHHHHHHHhhCch-hhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHHHHHHHHH
Confidence 4456778888888888864 3344556667899999999999999999998875 334444454444443
Q ss_pred -----CCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcCCCCHH
Q 006898 213 -----DDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKSWR 256 (626)
Q Consensus 213 -----d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~d~~~~ 256 (626)
-.+..+|..++..+..=.-.++. .+....++..+++.+.|...+
T Consensus 114 f~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtge 166 (460)
T KOG2213|consen 114 FGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGE 166 (460)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHH
Confidence 13556777666655432222221 334555666666666666554
No 169
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.77 E-value=0.15 Score=50.35 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc------CCChHHHHHHHHHHHHHHHhhC---------------h
Q 006898 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG---------------V 430 (626)
Q Consensus 372 ~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~r~~~~~~l~~l~~~~~---------------~ 430 (626)
..-|.+|...+..+++..+.... +.+...+..+++ ..+|+-+.+|+..++.++.... .
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVT-SILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 56777888888888877654432 222223333322 4579999999999998876431 1
Q ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHH
Q 006898 431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRA 498 (626)
Q Consensus 431 ~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~ 498 (626)
+++.+++.|-+. --.+..+-+|..|++.+..+-..+.++ ....++|.+...+.+++.-|+..|+.+
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 122333344333 112334445555555555554444433 233455555555555555555555443
No 170
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.74 E-value=0.02 Score=49.79 Aligned_cols=130 Identities=14% Similarity=0.113 Sum_probs=81.0
Q ss_pred HHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHH
Q 006898 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (626)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l 168 (626)
+++..+..|+++.+|.+|+.++..+.+...+ ++......+ .+..+..-++ ..+ .....++-..+
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~---------~L~~Ae~~~---~~~~sFtslS---~tL-a~~i~~lH~~L 106 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKP---------FLAQAEESK---GPSGSFTSLS---STL-ASMIMELHRGL 106 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHH---------HHHHHHhcC---CCCCCcccHH---HHH-HHHHHHHHHHH
Confidence 4556667899999999999999999886422 222111111 0000000000 000 01223334444
Q ss_pred HHhc-CCCCHHHHHHHHHhHHHHHHhhCc----cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccC
Q 006898 169 TQLC-QDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (626)
Q Consensus 169 ~~l~-~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 234 (626)
...+ .+.+..+-...++++..+++..+- .++...++..+..++.+.|.++|..++.+++.+....+
T Consensus 107 l~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 107 LLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 4444 445677888899999999887653 45566677778888889999999999999998876543
No 171
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.70 E-value=0.24 Score=53.14 Aligned_cols=165 Identities=15% Similarity=0.055 Sum_probs=93.2
Q ss_pred hHHHHHHHhhcC----CCHHHHHHHHHhhHHHHhhhch------hhHHhhHHHHHHHH----hcCCChHHHHHHHHHHHH
Q 006898 358 QLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVEL----AEDRHWRVRLAIIEYIPL 423 (626)
Q Consensus 358 ~l~~~l~~~l~d----~~~~vr~~a~~~L~~~~~~~~~------~~~~~~i~~~l~~~----~~~~~~~~r~~~~~~l~~ 423 (626)
.++..+..++++ ..+.+|..++-+++.+....-. ....+.+++.+.+. .++.+...+..++.+++.
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 344445555543 3567888888888877653211 11123444444433 344566677888888887
Q ss_pred HHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC--CChHHHHHHHHHHHH
Q 006898 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISL 501 (626)
Q Consensus 424 l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~ 501 (626)
++. ......+.|.+. .-.+....+|.+|+.+|..+...... .+.+.+.+.+.+ .+..+|.+|+..+-.
T Consensus 473 ~g~----~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 473 AGH----PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPR-----KVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred cCC----hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 542 222233444433 11234567999999999988765433 345556665554 467799999887764
Q ss_pred hccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHH
Q 006898 502 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL 538 (626)
Q Consensus 502 i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l 538 (626)
.- +.......+.. .+-.|++..|+......|
T Consensus 543 t~---P~~~~l~~ia~---~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 543 TK---PSVALLQRIAE---LLNKEPNLQVASFVYSHI 573 (574)
T ss_pred cC---CCHHHHHHHHH---HHhhcCcHHHHHHhHHhh
Confidence 32 11212222222 233577788887665543
No 172
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.52 E-value=0.026 Score=42.82 Aligned_cols=80 Identities=24% Similarity=0.298 Sum_probs=61.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHhHHHHHHhhC-ccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHH
Q 006898 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (626)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~ 244 (626)
......+.|+.+.||..+...|..+...-. .....+.++..+...++|+++.|-.+|++++..++...+.+ ++|
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-----vl~ 80 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-----VLP 80 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----HHH
Confidence 344456688889999999999999988766 44556778899999999999999999999999998776542 455
Q ss_pred HHHHhc
Q 006898 245 VIVNFS 250 (626)
Q Consensus 245 ~l~~~~ 250 (626)
.+.+..
T Consensus 81 ~L~~~y 86 (92)
T PF10363_consen 81 ILLDEY 86 (92)
T ss_pred HHHHHH
Confidence 554433
No 173
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.49 E-value=0.39 Score=48.88 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH--H--HHHHHHHHHHhcCCC
Q 006898 100 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--L--KTELRSIYTQLCQDD 175 (626)
Q Consensus 100 ~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~--~~~l~~~l~~l~~d~ 175 (626)
-..|-.|+++|+.++..++........-+.+...+++.+...|..++-++.+.+...... . .+.+.+.+...+.++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 456889999999999999876666556667888888899999999999988877655431 1 245666666666633
Q ss_pred C-----------HHHHHHHHHhHHHHHHh
Q 006898 176 M-----------PMVRRSAASNLGKFAAT 193 (626)
Q Consensus 176 ~-----------~~vR~~a~~~l~~l~~~ 193 (626)
+ .++|..+-..+..+...
T Consensus 181 ~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~ 209 (441)
T PF12054_consen 181 EPPYYDELVPSLKRLRTECQQLLATFRDV 209 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 25666665555555543
No 174
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.47 E-value=0.24 Score=54.25 Aligned_cols=227 Identities=15% Similarity=0.103 Sum_probs=130.7
Q ss_pred HHHHHHHHHhccccccCC------cchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhc-
Q 006898 63 VLLAMAEELGVFIPYVGG------VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA- 135 (626)
Q Consensus 63 vr~~~~~~l~~~~~~~~~------~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~- 135 (626)
+|......+++++..+.. ......++..+..+...+.-.+|+.|.-+.-.+...+-. ...++.+
T Consensus 171 fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~---------va~~Ls~~ 241 (1048)
T KOG2011|consen 171 FRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVS---------VALNLSSH 241 (1048)
T ss_pred HHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHh
Confidence 455555666666554332 123455666677776666777888877666665544321 1111111
Q ss_pred ------------CCccchhHHHhhHhHHhcCCCC--hHHHHHHHHHHHHh--------cCCCCHHHHHHHHHhHHHHHHh
Q 006898 136 ------------GEWFTARVSACGLFHIAYPSAP--DILKTELRSIYTQL--------CQDDMPMVRRSAASNLGKFAAT 193 (626)
Q Consensus 136 ------------~~~~~~r~~a~~~l~~~~~~~~--~~~~~~l~~~l~~l--------~~d~~~~vR~~a~~~l~~l~~~ 193 (626)
.+....|.. +..+....+ .+.+.++..++..+ ..|-.+.+|..+++.||.++..
T Consensus 242 ~~~tskQleaEr~k~r~~rar----le~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~ 317 (1048)
T KOG2011|consen 242 NDKTSKQLEAERNKSRGNRAR----LESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKS 317 (1048)
T ss_pred hHHHHHHHHHHhcccccchHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHh
Confidence 111111211 111111111 12233333333332 3588999999999999999999
Q ss_pred hCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHH
Q 006898 194 VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYEL 268 (626)
Q Consensus 194 ~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~-~d~~~~vR~~a~~~l~~l 268 (626)
.|.-.+..-.+.++--.++|.+..||..++++|..+.+.-.. +.+.+.+-.-+..++ .|.+..||......+...
T Consensus 318 yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 318 YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 887555566777888889999999999999999999877221 223333333333333 666777887665544332
Q ss_pred HHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 006898 269 CEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305 (626)
Q Consensus 269 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 305 (626)
.. .......-+..+..++-|.++.++.+|...+.
T Consensus 398 ~~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 398 SS---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred hc---ccccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 21 11112223344567777888888888877664
No 175
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.41 E-value=0.045 Score=46.91 Aligned_cols=138 Identities=12% Similarity=0.105 Sum_probs=81.6
Q ss_pred HhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc-----CCCHHHHHHHHHhhHHHHhh---
Q 006898 318 QHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQV--- 388 (626)
Q Consensus 318 ~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~L~~~~~~--- 388 (626)
+.+++.+.++++ +.+|.+|..+++++|.++..=+-. ......... +.+........ ....
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~------~k~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~ 77 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYK------HKSIQKSLDSKSSENSNDESTDISL-----PMMGISP 77 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHH------HhcccccCCccccccccccchhhHH-----hhccCCC
Confidence 556666666544 456888888888888887431110 000111111 11111111111 1111
Q ss_pred hchhhHHhhHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 006898 389 IGIDLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (626)
Q Consensus 389 ~~~~~~~~~i~~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (626)
...+.+...++..+.+.++|++ ...+..+++++..+.+.+|... +.++++|.++..+.......|+....-|+.++.
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2334445566777888888875 4455678888888887776554 457889999998887777888887777777765
Q ss_pred H
Q 006898 466 E 466 (626)
Q Consensus 466 ~ 466 (626)
.
T Consensus 158 i 158 (160)
T PF11865_consen 158 I 158 (160)
T ss_pred H
Confidence 4
No 176
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.39 E-value=0.056 Score=41.08 Aligned_cols=82 Identities=18% Similarity=0.109 Sum_probs=55.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHH
Q 006898 402 IVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480 (626)
Q Consensus 402 l~~~~~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l 480 (626)
....++|+...+|..++..+..+...-. .....+.++.++...+.|++.-|=.+|++++..++...+. .++|.+
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L 82 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPIL 82 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHH
Confidence 3344456666666666666666665544 3333466777888888888888888888888888877543 367777
Q ss_pred HhhhcCCC
Q 006898 481 LEMINNPH 488 (626)
Q Consensus 481 ~~~l~~~~ 488 (626)
.+.+.+.+
T Consensus 83 ~~~y~~~~ 90 (92)
T PF10363_consen 83 LDEYADPS 90 (92)
T ss_pred HHHHhCcc
Confidence 77665543
No 177
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.36 E-value=1.1 Score=49.55 Aligned_cols=130 Identities=17% Similarity=0.124 Sum_probs=98.7
Q ss_pred hcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH---hCh-HHHhhhhHHHHH
Q 006898 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE---FGP-EWAMQHITPQVL 481 (626)
Q Consensus 406 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~---~~~-~~~~~~il~~l~ 481 (626)
+.|-...+|..+++.++.+.+..+..++....+..+-+.|.|.+..||..++++|..+... .+. ..+.+++-..+.
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV 375 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV 375 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 4678899999999999999999888888888889999999999999999999999999876 111 234577778888
Q ss_pred hhh-cCCChHHHHHHHHHHHHhc--cccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898 482 EMI-NNPHYLYRMTILRAISLLA--PVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540 (626)
Q Consensus 482 ~~l-~~~~~~vR~~a~~~l~~i~--~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 540 (626)
++. .|-+..||...+..+-... ..++. .-.-.+..++-|.++.++..|..-+..
T Consensus 376 eMadrd~~~~Vrav~L~~~~~~~~~g~L~d-----~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLCLLLSSSGLLSD-----KDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHhhhcchhHHHHHHHHHHHHhcccccCh-----hHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 877 5567888887777665442 22222 223345566778899998888777643
No 178
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.32 E-value=0.029 Score=48.29 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhhcCCChHHHHHHHHHHHHh
Q 006898 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLL 502 (626)
Q Consensus 435 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i 502 (626)
+.++|+++..+...+..-|-.|...+..+...-+.+. ....+++.+...++..+..+...++.++..+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666622221 1123333333334444555555555555544
No 179
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.31 E-value=0.18 Score=55.56 Aligned_cols=175 Identities=11% Similarity=0.041 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcCCc
Q 006898 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKV 449 (626)
Q Consensus 372 ~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~ 449 (626)
..||.+++++|+.+.+......+ ...+..+.++...++|++|...+..+.........- .+.+.+++.+...+.|.+
T Consensus 143 apVre~caq~L~~~l~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ 221 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSD 221 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 57999999999999888766654 567778888888889999988777666544322111 233567788888999999
Q ss_pred hHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhc---CCCh---HHHHHHHHHHHHh-ccccChH-HhhhcHHHHH
Q 006898 450 YSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMIN---NPHY---LYRMTILRAISLL-APVMGSE-ITCSRLLPVV 519 (626)
Q Consensus 450 ~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~---~~~~---~vR~~a~~~l~~i-~~~~~~~-~~~~~~l~~l 519 (626)
..||..|+..+..+....-.. .....++..+...+. |-.+ ..|......+... ...+... .....+.|.+
T Consensus 222 ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~ 301 (1549)
T KOG0392|consen 222 DDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRL 301 (1549)
T ss_pred hHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhh
Confidence 999999999887776655111 111233333333221 1111 1221111111110 0000000 1112455666
Q ss_pred hhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 520 INASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 520 ~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
.-.+.+.-..+|..++..+..+.+.-+.
T Consensus 302 ~p~l~~~i~sv~~a~l~~l~~lle~~~q 329 (1549)
T KOG0392|consen 302 WPFLRHTISSVRRAALETLAMLLEADDQ 329 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6667777788999999999988876543
No 180
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.28 E-value=0.92 Score=41.90 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=101.9
Q ss_pred HhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHH-
Q 006898 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN- 248 (626)
Q Consensus 170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~- 248 (626)
++.+..++++.....+.|..++.+-. ...+.++..+..+.+.+....+..+.+.+..+.+.-+.- .+.+-+.+..
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L~~~ 83 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLLLLL 83 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHHHHH
Confidence 35566777777777777777776532 333445566666666666666556666666655443321 1222222222
Q ss_pred --------hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhh--ChHHHH
Q 006898 249 --------FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRIL--NPELAI 317 (626)
Q Consensus 249 --------~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~--~~~~~~ 317 (626)
.-.+..++...+.+.++..++...+. ...++++.+...+ ++.++.++..+++++..+++.- +....+
T Consensus 84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w 161 (234)
T PF12530_consen 84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAW 161 (234)
T ss_pred HhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 12345677777777888888887665 3457888888889 7888889999999999998532 222223
Q ss_pred HhhHHHHHHhccCCCHHHHHHHHHHHHhh
Q 006898 318 QHILPCVKELSSDSSQHVRSALASVIMGM 346 (626)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l 346 (626)
..+.+. +-.+..+.+-...++.+..+
T Consensus 162 ~vl~~~---l~~~~rp~v~~~l~~l~~l~ 187 (234)
T PF12530_consen 162 KVLQKK---LSLDYRPLVLKSLCSLFALV 187 (234)
T ss_pred HHHHHh---cCCccchHHHHHHHHHHHHh
Confidence 333333 33455566665555555443
No 181
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=96.28 E-value=0.78 Score=45.32 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=57.1
Q ss_pred hhHHHhhHhHHhcCCCChHHHHHHHHHHHHhc-CCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHH
Q 006898 141 ARVSACGLFHIAYPSAPDILKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR 219 (626)
Q Consensus 141 ~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr 219 (626)
.|...+.++..+.. .+ .-..+...+..++ ++.+.......+.+++.....+ .......++..+.+.++|..+.+|
T Consensus 3 ~r~~~~~~L~~l~~-~~--~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 3 QRVLHASMLSSLPS-SS--LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHHhCCC-cc--hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHH
Confidence 45555555555544 11 3344444444443 3566777888888888777766 334556788888888888888888
Q ss_pred HHHHHHHHHhhc
Q 006898 220 LLAVEGCAALGK 231 (626)
Q Consensus 220 ~~a~~~l~~l~~ 231 (626)
..-+..++....
T Consensus 79 ~~w~~~~~~~~~ 90 (339)
T PF12074_consen 79 RAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHh
Confidence 888888877665
No 182
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=3.5 Score=48.24 Aligned_cols=229 Identities=15% Similarity=0.105 Sum_probs=142.5
Q ss_pred hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH-HHHHHHHHHH-HhcCCCCHHHHHHHHHhHHHHHHhhCc-
Q 006898 120 SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEP- 196 (626)
Q Consensus 120 ~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~-~l~~d~~~~vR~~a~~~l~~l~~~~~~- 196 (626)
+.++..-.-++...+...++..|..+...++.++...++. ....+...+. ++-+-.++.-|..-.-++|.+-+..|.
T Consensus 871 e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~ 950 (2067)
T KOG1822|consen 871 EEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSI 950 (2067)
T ss_pred HHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCC
Confidence 3333333333444455566778888888888877666543 3444444444 444445666777777888888887765
Q ss_pred --cchhhhHHHHHHHhhcCCch-hHHHHHHHHHHHhhcccCchh--hhhhhHHHHHH-hcCCC--CHHHHHHHHHHHH--
Q 006898 197 --AHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEPQD--CVAHILPVIVN-FSQDK--SWRVRYMVANQLY-- 266 (626)
Q Consensus 197 --~~~~~~ll~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~-~~~d~--~~~vR~~a~~~l~-- 266 (626)
......-+..+..+.+|+.+ .|+.-++.++.-+....++-. +....+..+.. +++++ ..+|+...-.++.
T Consensus 951 ~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~ 1030 (2067)
T KOG1822|consen 951 GSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGD 1030 (2067)
T ss_pred CCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccc
Confidence 23333344577788888755 899999999998887776632 12222222222 34444 3445666556665
Q ss_pred ----HHHHHhCCCccccc-----------hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCC
Q 006898 267 ----ELCEAVGPEPTRMD-----------LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 331 (626)
Q Consensus 267 ----~l~~~~~~~~~~~~-----------l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~ 331 (626)
.+....|++...+. .+-...-++..+++.+..++++++..+.-.-+...-.+.+++.+..++..+
T Consensus 1031 ~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1031 DDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSS 1110 (2067)
T ss_pred hhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcch
Confidence 77777776643221 111112233455788999999999988776666555577888888888877
Q ss_pred CHHHHHHHHHHHHhhhh
Q 006898 332 SQHVRSALASVIMGMAP 348 (626)
Q Consensus 332 ~~~vr~~~~~~l~~l~~ 348 (626)
.--.|.+...++..++.
T Consensus 1111 ~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1111 YLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred hhhhhhhHHhhhhHHhH
Confidence 77777777777766653
No 183
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.21 E-value=1.6 Score=43.89 Aligned_cols=69 Identities=9% Similarity=0.090 Sum_probs=50.4
Q ss_pred hhHHHHHhhhc-CCChHHHHHHHHHHHHhccccChH-Hhhh--cHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898 475 HITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE-ITCS--RLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (626)
Q Consensus 475 ~il~~l~~~l~-~~~~~vR~~a~~~l~~i~~~~~~~-~~~~--~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 543 (626)
.++..|.+++. ..++.+-..||.=+|.++++.+.. ...+ ..-..++.++++++++||..|+.++.++..
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45666666663 446777788889999999876432 2222 245567888999999999999999998854
No 184
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.38 Score=45.85 Aligned_cols=99 Identities=16% Similarity=0.239 Sum_probs=69.6
Q ss_pred cCccHHHHHHHHhhHHHHHHhhChHhh---hhhhccccccccCCchHHHHHHHHHHhccccccCCcchhh------cchH
Q 006898 19 KNDDIQLRLNSIRRLSTIARALGEERT---RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAH------VLLP 89 (626)
Q Consensus 19 ~s~d~~~r~~a~~~l~~i~~~~~~~~~---~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~------~l~~ 89 (626)
.+.+.+.|..|+..|......++.... ..-+.|.+..+.++++++|..++..+|..+.- .+...+ .+-.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qN--NP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQN--NPKSQEQVIELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHcccHHH
Confidence 577888899999888888776654321 22334555556788899999999999988763 222222 2233
Q ss_pred HHhhhhcCcchHHHHHHHHHHHHHHhhcCh
Q 006898 90 PLETLCTVEETCVRDKAVESLCRIGSQMRE 119 (626)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~ 119 (626)
++..+.++++..+|..|.-+++.+.++.++
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~ 200 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKP 200 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcH
Confidence 455566777888899999999998888776
No 185
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.17 E-value=1 Score=41.66 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhh-cCCchhHHHHHHHHHHHhh
Q 006898 174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALG 230 (626)
Q Consensus 174 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~-~d~~~~vr~~a~~~l~~l~ 230 (626)
+..++...+.+.++..++...+. ....+++.+...+ ++.++.++..+++.+..++
T Consensus 95 ~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 95 DEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred cchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 44567777777778888877655 6677888888888 7778888999999998888
No 186
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=2.5 Score=44.50 Aligned_cols=454 Identities=13% Similarity=0.133 Sum_probs=226.5
Q ss_pred chHHHHHHHHHHHHHHhhcChhhHH-HhHHHHHHHHhcCCccchhHHHhhHhHHhcC-CCChHHHHHHHHHHHHhc----
Q 006898 99 ETCVRDKAVESLCRIGSQMRESDLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYP-SAPDILKTELRSIYTQLC---- 172 (626)
Q Consensus 99 ~~~vR~~a~~~l~~i~~~~~~~~~~-~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~-~~~~~~~~~l~~~l~~l~---- 172 (626)
++.+-..+.+++++..+.+.-.-+. +..++++.+.++ ....|.+||.++-++.. +..+..+-.+++.+...+
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg 283 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFG 283 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence 6666667777777766655443222 235666666555 35689999998887655 455555555555552211
Q ss_pred ---CC--CCHHHHHHHHHhHHHHHHh-------hCc-------cc---hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 006898 173 ---QD--DMPMVRRSAASNLGKFAAT-------VEP-------AH---LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (626)
Q Consensus 173 ---~d--~~~~vR~~a~~~l~~l~~~-------~~~-------~~---~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (626)
.| .++++-....+.+..++.. ... +. ..-.++|++.+.+.|++++.-......+....
T Consensus 284 ~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl 363 (980)
T KOG2021|consen 284 YHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYL 363 (980)
T ss_pred hhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 12 3344333332222222110 000 01 11236788888888888777666666555444
Q ss_pred cccCc---------hhhhhhhHHHHHHhcCCC------C----------HHHHHHHHHHHHHHHHHhCCCccccchHHHH
Q 006898 231 KLLEP---------QDCVAHILPVIVNFSQDK------S----------WRVRYMVANQLYELCEAVGPEPTRMDLVPAY 285 (626)
Q Consensus 231 ~~~~~---------~~~~~~i~~~l~~~~~d~------~----------~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l 285 (626)
..+.+ ......+...+++.+.|+ + .++|...-.....++.. ..+.+...+-..+
T Consensus 364 ~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~i-dpsl~l~~Ir~sl 442 (980)
T KOG2021|consen 364 AFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVI-DPSLFLNNIRQSL 442 (980)
T ss_pred HHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 33322 112223344445544332 1 24565543333333322 1111112222222
Q ss_pred ---HHhcCCChHHHHHHHHHhHHHHHHhhChH------------HHHHhhHHHHH--HhccCCCHHHHHHHHHHHHhhhh
Q 006898 286 ---VRLLRDNEAEVRIAAAGKVTKFCRILNPE------------LAIQHILPCVK--ELSSDSSQHVRSALASVIMGMAP 348 (626)
Q Consensus 286 ---~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------------~~~~~l~~~l~--~l~~d~~~~vr~~~~~~l~~l~~ 348 (626)
+...++++++.-+.|+..+-.+++.+..+ .+...+++.+. +...++++.|.-...+.+....+
T Consensus 443 S~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~k 522 (980)
T KOG2021|consen 443 SAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNK 522 (980)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Confidence 22334566888888998888888865422 12233444443 34567788887777777777655
Q ss_pred hhcHHHHHHhHHHHHHHhh------cCCCHHHHHHHHHhhHHHHhhhchhh--HHhhHHHHHHHHhcCC----C------
Q 006898 349 LLGKDATIEQLLPIFLSLL------KDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR----H------ 410 (626)
Q Consensus 349 ~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~~----~------ 410 (626)
.+..+ .+-+|.++..+ .+.+..||..|.--+.++.+.+.... +.+.++..+..++..+ +
T Consensus 523 ff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~l 599 (980)
T KOG2021|consen 523 FFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNL 599 (980)
T ss_pred HHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCcccccc
Confidence 55432 12344444443 35678999988877777766544321 2344555554444111 1
Q ss_pred --hHHHHHHHHHHHHHHHh---------------hChhhHHHHHHHHHHHHhcCCchHHHH----HHHHHHHHHHHHhCh
Q 006898 411 --WRVRLAIIEYIPLLASQ---------------LGVGFFDDKLGALCMQWLQDKVYSIRD----AAANNLKRLAEEFGP 469 (626)
Q Consensus 411 --~~~r~~~~~~l~~l~~~---------------~~~~~~~~~l~p~l~~~l~d~~~~VR~----~a~~~l~~l~~~~~~ 469 (626)
..-..-..+.++-+... ..+-.....+.+....+-+|.+..|.. .++.+++.+.+.+..
T Consensus 600 t~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~ 679 (980)
T KOG2021|consen 600 TIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHI 679 (980)
T ss_pred ccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccc
Confidence 00011111122211110 011111122233333344565555543 344566777665422
Q ss_pred H----------HHhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHH
Q 006898 470 E----------WAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV 537 (626)
Q Consensus 470 ~----------~~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~ 537 (626)
. .....++..+...+.. ....+|.+.-..+++++..+|++ ..+.+-..+..+++|.++.--..-...
T Consensus 680 rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~-vlPfipklie~lL~s~d~kEmvdfl~f 758 (980)
T KOG2021|consen 680 RLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNK-VLPFIPKLIELLLSSTDLKEMVDFLGF 758 (980)
T ss_pred cCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchh-hhcchHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 1123333333333322 34567888888888888888866 233333334445677777655555666
Q ss_pred HHHHHhhhccc--hhhhcccchHH
Q 006898 538 LQSLIPIVDQS--VSTFSVSPFSF 559 (626)
Q Consensus 538 l~~i~~~~~~~--~~~~~i~~~l~ 559 (626)
|..++..+..+ .+.+.++|.|.
T Consensus 759 lsQLihkfk~~~~~ilnqmlppll 782 (980)
T KOG2021|consen 759 LSQLIHKFKTDCYQILNQMLPPLL 782 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665543 33444555444
No 187
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=1.4 Score=41.07 Aligned_cols=49 Identities=14% Similarity=0.075 Sum_probs=35.2
Q ss_pred CCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCccccc
Q 006898 524 KDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 524 ~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
.++++.+|.....+|-.+...-... .....+.|++..-....+|++++.
T Consensus 254 RepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ 304 (353)
T KOG2973|consen 254 REPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIRE 304 (353)
T ss_pred CCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHH
Confidence 5888999999999998876554332 334567788883336677888887
No 188
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.87 E-value=1.2 Score=43.42 Aligned_cols=186 Identities=13% Similarity=0.160 Sum_probs=116.7
Q ss_pred HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh-ch------hhH--H-hhHHHHHHHHhcCCChHHHHHHHHHHH
Q 006898 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GI------DLL--S-QSLLPAIVELAEDRHWRVRLAIIEYIP 422 (626)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~------~~~--~-~~i~~~l~~~~~~~~~~~r~~~~~~l~ 422 (626)
+.+...+++.+...+..-+.+.|+.+...++.+...- +. +.+ . ..++..+....++++...- .+
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~------~g 144 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN------CG 144 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH------HH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch------HH
Confidence 3445577778888888888888888887777665432 11 111 1 3466667776666653221 11
Q ss_pred HHHHhh-ChhhHH-----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HH---HhhhhHHHHHhhhcCCChH
Q 006898 423 LLASQL-GVGFFD-----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EW---AMQHITPQVLEMINNPHYL 490 (626)
Q Consensus 423 ~l~~~~-~~~~~~-----~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~---~~~~il~~l~~~l~~~~~~ 490 (626)
.+...+ .-+.+. +..+..++...+.++.+|-.-|..++..+...... ++ ..+.++.....++.++|+-
T Consensus 145 ~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 145 DMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred HHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 111111 111111 11222366778889999999999888887654321 11 1356777788899999999
Q ss_pred HHHHHHHHHHHhccccChHHh------hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898 491 YRMTILRAISLLAPVMGSEIT------CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 491 vR~~a~~~l~~i~~~~~~~~~------~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 544 (626)
+|..++..+|.+...-....+ ...-+..++.+++|+..++|..|..++..+...
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999999999998753222111 245777888899999999999999999987655
No 189
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=95.85 E-value=6.8 Score=48.10 Aligned_cols=244 Identities=17% Similarity=0.154 Sum_probs=135.4
Q ss_pred HhcCccHHHHHHHHhhHHHHHHhhCh------H--hhhhhhcccccc--ccCCchHHHHHHHHHHh-ccccccCCcchhh
Q 006898 17 ELKNDDIQLRLNSIRRLSTIARALGE------E--RTRKELIPFLSE--NNDDDDEVLLAMAEELG-VFIPYVGGVEHAH 85 (626)
Q Consensus 17 ~l~s~d~~~r~~a~~~l~~i~~~~~~------~--~~~~~l~~~l~~--~~~~~~~vr~~~~~~l~-~~~~~~~~~~~~~ 85 (626)
.....|...|..+...+..+....-. . ++...++..+.. ..+.++.+|......+. .+.+....+
T Consensus 489 ~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~laQ~---- 564 (2341)
T KOG0891|consen 489 YLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLAQP---- 564 (2341)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhcCc----
Confidence 34567778888887666666443221 0 113333333333 45777888877777665 222222222
Q ss_pred cchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH----HhcCC----ccchhHHHhhHhHHhcCCCC
Q 006898 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKR----LAAGE----WFTARVSACGLFHIAYPSAP 157 (626)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~----l~~~~----~~~~r~~a~~~l~~~~~~~~ 157 (626)
..+..+.....++.-.++..+...++.++..-+ .+++|.+.. ..+.- ...+....+..+..+.....
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~ 639 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSP 639 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHH
Confidence 233333344456677788888877777766444 223333322 11111 11122233333333222221
Q ss_pred ---hHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhhc
Q 006898 158 ---DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGK 231 (626)
Q Consensus 158 ---~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~-~~vr~~a~~~l~~l~~ 231 (626)
..+...++..+...+.+.+..+-+.+..+++.++...|. ..+...+++.+.+.+.|.. ..-|.++...++.+.+
T Consensus 640 ~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 640 VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 124455556666677888889999999999999998873 2333467777777776653 4567788888888876
Q ss_pred ccCc----hhhhhhhHHHHH-HhcCCCCHHHHHHHHHHHHHHH
Q 006898 232 LLEP----QDCVAHILPVIV-NFSQDKSWRVRYMVANQLYELC 269 (626)
Q Consensus 232 ~~~~----~~~~~~i~~~l~-~~~~d~~~~vR~~a~~~l~~l~ 269 (626)
..+- -...+.++..+. .....-...+|..+.+.++..+
T Consensus 720 ~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 720 STGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred ccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 5432 112333444433 3334445667888888777443
No 190
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.81 E-value=0.23 Score=42.89 Aligned_cols=75 Identities=16% Similarity=0.082 Sum_probs=61.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHhcCCchHHHHHHHHHHHHH---HHHhCh
Q 006898 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRL---AEEFGP 469 (626)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~l~p~l~~~l~d~~~~VR~~a~~~l~~l---~~~~~~ 469 (626)
+.++|.+.+-+.+.....|..|.+.+..+.+.-+.+.+. +++++.+-..++.++++|..++.++|..+ ....|+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 778999999999999999999999999999884443333 45566677789999999999999999999 455565
Q ss_pred H
Q 006898 470 E 470 (626)
Q Consensus 470 ~ 470 (626)
.
T Consensus 117 a 117 (183)
T PF10274_consen 117 A 117 (183)
T ss_pred H
Confidence 4
No 191
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=3.8 Score=43.52 Aligned_cols=211 Identities=12% Similarity=0.138 Sum_probs=121.1
Q ss_pred hhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCc-chHHHHHHHHHHHHHHhhcC--hhhHH
Q 006898 47 KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMR--ESDLV 123 (626)
Q Consensus 47 ~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~i~~~~~--~~~~~ 123 (626)
+.++|-+....+..--+|+.++-.+|.++..--..+....+.-.+.+++.|. |.-||-+++++++.....+. ++.+.
T Consensus 487 ~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFl 566 (978)
T KOG1993|consen 487 EALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFL 566 (978)
T ss_pred HhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhh
Confidence 3444444422223335788888899988763222233444455577788776 66789999999999888653 22222
Q ss_pred HhH---HHHHHHHhcC-CccchhHHHhhHhHHhcCCCChH---HHHHHH---HHHHHhcCCCCHHHHHHHHHhHHHHHHh
Q 006898 124 DWY---IPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI---LKTELR---SIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (626)
Q Consensus 124 ~~l---~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~---~~l~~l~~d~~~~vR~~a~~~l~~l~~~ 193 (626)
+++ --.+..+... ..-..|......++.+..+.++. +...++ |.+.+..+ +.+-.|.+.+..+.+++..
T Consensus 567 p~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~a 645 (978)
T KOG1993|consen 567 PYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNA 645 (978)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHH
Confidence 221 1111222221 23456777777777777666543 333333 44443333 4577999999999999999
Q ss_pred hCcc--chhhhHHHHHHHhhcCCchh---HHHHHHHHHHHhhcccCc-hhhhhhhHHHHHHhcCCCCHHHH
Q 006898 194 VEPA--HLKTDIMSIFEDLTQDDQDS---VRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVR 258 (626)
Q Consensus 194 ~~~~--~~~~~ll~~l~~l~~d~~~~---vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d~~~~vR 258 (626)
+|.+ ..++-++|.+....+-+.|+ .-+-+.+.+..+....+. .+..-.+.|.+...++-.+...|
T Consensus 646 lg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~ 716 (978)
T KOG1993|consen 646 LGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLP 716 (978)
T ss_pred hccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHH
Confidence 8863 45666777766554444443 334566666666655544 22233455555555443333333
No 192
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.60 E-value=0.34 Score=47.59 Aligned_cols=131 Identities=21% Similarity=0.306 Sum_probs=80.2
Q ss_pred hcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCC-------ChHHHHHHHHHHHHHHHh--hChhhHHHHH
Q 006898 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGVGFFDDKL 437 (626)
Q Consensus 367 l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~r~~~~~~l~~l~~~--~~~~~~~~~l 437 (626)
+.+.+...|..|+..|..=. | ...++|.+..++.+. ++..-...++.+..+... +..+.+...+
T Consensus 187 ~~~~~~~~r~~aL~sL~tD~---g----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~L 259 (343)
T cd08050 187 LVGSNEEKRREALQSLRTDP---G----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQL 259 (343)
T ss_pred HhCCCHHHHHHHHHHhccCC---C----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHH
Confidence 33455666666665554311 1 145666665554321 344444444444444432 2234455668
Q ss_pred HHHHHHHh----------cCCchHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCCC--hHHHHHHHHHHHHhc
Q 006898 438 GALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPH--YLYRMTILRAISLLA 503 (626)
Q Consensus 438 ~p~l~~~l----------~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~~--~~vR~~a~~~l~~i~ 503 (626)
+|.++.++ .+..+.+|..|+..++.++..++.. ....+++..+.+.+.|++ .....+|+.++..++
T Consensus 260 ip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 260 IPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 88877765 3567899999999999999998865 355677777777666653 445788888888765
Q ss_pred c
Q 006898 504 P 504 (626)
Q Consensus 504 ~ 504 (626)
.
T Consensus 340 ~ 340 (343)
T cd08050 340 P 340 (343)
T ss_pred c
Confidence 3
No 193
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.56 E-value=3 Score=41.94 Aligned_cols=194 Identities=13% Similarity=0.136 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006898 106 AVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAAS 185 (626)
Q Consensus 106 a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~ 185 (626)
.+.++-.+.....+.+..++++-++..++.++...++. |...... . ++....++.+++.+++-+...++.
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~-----f~~~~~~-~----~~~~~~fl~lL~~~d~~i~~~a~~ 123 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKL-----FHDDALL-K----KKTWEPFFNLLNRQDQFIVHMSFS 123 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHH-----HHHHhhc-c----ccchHHHHHHHcCCchhHHHHHHH
Confidence 44444455555566666677777777666654221211 1111100 1 112233334666778889999999
Q ss_pred hHHHHHHhhCcc---chhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCch-hh-hhhhHHHHHHhcCCC--CHHH
Q 006898 186 NLGKFAATVEPA---HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ-DC-VAHILPVIVNFSQDK--SWRV 257 (626)
Q Consensus 186 ~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~-~~-~~~i~~~l~~~~~d~--~~~v 257 (626)
.+..++..-... .....+.+.+...+..+ +...+..++.++..+...-.-. .+ ....++.+...++.. +...
T Consensus 124 iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql 203 (429)
T cd00256 124 ILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQL 203 (429)
T ss_pred HHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHH
Confidence 998887643221 12233445555555543 3455666777887766443221 11 122344444444322 3344
Q ss_pred HHHHHHHHHHHHHHh-C-CCccccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHH
Q 006898 258 RYMVANQLYELCEAV-G-PEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCR 309 (626)
Q Consensus 258 R~~a~~~l~~l~~~~-~-~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~ 309 (626)
.+.++-++-.+.-.- + .......+++.+...+++.. ..|-+-++.++..+..
T Consensus 204 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 204 QYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 455544443332110 0 01112357777777766543 2333444444444444
No 194
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.54 E-value=2.9 Score=41.56 Aligned_cols=225 Identities=15% Similarity=0.108 Sum_probs=129.4
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH-HHHHH-hHHHHHHHhh-cC-CCHHHHHHHHHhhHHHHhhh-chhhH
Q 006898 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-DATIE-QLLPIFLSLL-KD-EFPDVRLNIISKLDQVNQVI-GIDLL 394 (626)
Q Consensus 320 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~-~l~~~l~~~l-~d-~~~~vr~~a~~~L~~~~~~~-~~~~~ 394 (626)
..+.+..++-+++..||.++.+.+..+...... ..+.+ ++--.+...| +| ....=|..|++-+..+.+.- |.+.+
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence 344444333333488999998888766543211 11111 1111122233 33 34456788888888887763 45555
Q ss_pred HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH----
Q 006898 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---- 470 (626)
Q Consensus 395 ~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---- 470 (626)
...++..+..+.++++.+.|..+++.+..++-....-.+...-+..+.+.+.|....+-...+.++-.+.+.-...
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~ 185 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR 185 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence 5678888999999999999999999999887543332223233455666666665555555554444443321111
Q ss_pred --HHhhhhHHHHHhhh---cCCCh--HHHHHHHHHHHHhccccChHHh----hhcHHHHHhhhCCCCCchHHHHHHHHHH
Q 006898 471 --WAMQHITPQVLEMI---NNPHY--LYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQ 539 (626)
Q Consensus 471 --~~~~~il~~l~~~l---~~~~~--~vR~~a~~~l~~i~~~~~~~~~----~~~~l~~l~~~l~d~~~~vR~~a~~~l~ 539 (626)
.-.+.++..+.+.- ..++. ..-..+..++..+.+....-.+ ...-+..+...+.-+++++|....+.+-
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11122333333320 11122 2445666677777765443211 0156777888888999999999999999
Q ss_pred HHHhh
Q 006898 540 SLIPI 544 (626)
Q Consensus 540 ~i~~~ 544 (626)
.+...
T Consensus 266 dllri 270 (371)
T PF14664_consen 266 DLLRI 270 (371)
T ss_pred HHHCC
Confidence 88764
No 195
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.49 E-value=2.7 Score=42.55 Aligned_cols=251 Identities=10% Similarity=0.050 Sum_probs=141.9
Q ss_pred cCCCHHHHHHHHHHHHhhhhhhcHHH----HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh--hHHhhHHHHH
Q 006898 329 SDSSQHVRSALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAI 402 (626)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~--~~~~~i~~~l 402 (626)
.+++|..-+.+.+.+..+......+. +...++..++.++..+|+.-|......+..+...+... .+...+...+
T Consensus 100 ~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~ 179 (409)
T PF01603_consen 100 LEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIF 179 (409)
T ss_dssp --TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHH
T ss_pred cccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45677766777777766665544333 45567777888888888888888888887766544321 2223344445
Q ss_pred HHHhcC-CChHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHHHhChHHHhhhhH
Q 006898 403 VELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEWAMQHIT 477 (626)
Q Consensus 403 ~~~~~~-~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~-VR~~a~~~l~~l~~~~~~~~~~~~il 477 (626)
.+...+ ....--..+++.++.+.+++. ++.....+...++.+...+... ....-..|+..++..- + .....++
T Consensus 180 ~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p-~l~~~~i 257 (409)
T PF01603_consen 180 YRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-P-SLAEPVI 257 (409)
T ss_dssp HHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--G-GGHHHHH
T ss_pred HHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-c-hhHHHHH
Confidence 555443 334445567788888887765 2333344444555554444332 2444555555555431 1 1334455
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhccccChHHh---hhcHHHHHhhhCCCCCchHHHHHHHHHHH--HHhhhcc--chh
Q 006898 478 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQS--LIPIVDQ--SVS 550 (626)
Q Consensus 478 ~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~---~~~~l~~l~~~l~d~~~~vR~~a~~~l~~--i~~~~~~--~~~ 550 (626)
..+.+.---.+..-....+.-+..+.+.++++.+ ...+...+..+++.+...|-..|+..+.+ +...+.. ...
T Consensus 258 ~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i 337 (409)
T PF01603_consen 258 KGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVI 337 (409)
T ss_dssp HHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHH
T ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHH
Confidence 5555555556777788888889999888887654 34566677778889999998888877743 2333322 123
Q ss_pred hhcccchHHhhhc-cCCCcccccccccCchhHHHHHHHHHHH
Q 006898 551 TFSVSPFSFMLYL-NVNNFNVGFIFAAFPLVLFSCLALNYCH 591 (626)
Q Consensus 551 ~~~i~~~l~~~l~-~d~d~~vr~~~~~~~~~~~a~~al~~~~ 591 (626)
.+.+.|.|. +.. +.=+..||. .|..++..+.
T Consensus 338 ~p~i~~~L~-~~~~~HWn~~Vr~---------~a~~vl~~l~ 369 (409)
T PF01603_consen 338 LPIIFPALY-RNSKNHWNQTVRN---------LAQNVLKILM 369 (409)
T ss_dssp HHHHHHHHS-STTSS-SSTTHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHhhHHHHH---------HHHHHHHHHH
Confidence 344555555 332 333677888 7777766653
No 196
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=2.7 Score=40.33 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch---hhhhhhHH-HHHH
Q 006898 175 DMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILP-VIVN 248 (626)
Q Consensus 175 ~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~-~l~~ 248 (626)
.+.+=|..+..-|..+++.+... ......+..+..++++.+..+|..|...++...+..++. .+....++ .+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 45667777888888888776542 112223334444888899999999999999888877762 12222333 3344
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCC--ChHHHHHHHHHhHHHHHHhhChH--HHHHhhH
Q 006898 249 FSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRD--NEAEVRIAAAGKVTKFCRILNPE--LAIQHIL 321 (626)
Q Consensus 249 ~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~ 321 (626)
+..|.+..+|..+..+++.+.+....- +..-.=...+...+++ .+...+..++..+..+.+.-..+ ......+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 556777888888888888887764321 1111224455566665 44556666777777666533222 1112222
Q ss_pred HH-HHHhccCCCHHHHHHHHHHHHhhh
Q 006898 322 PC-VKELSSDSSQHVRSALASVIMGMA 347 (626)
Q Consensus 322 ~~-l~~l~~d~~~~vr~~~~~~l~~l~ 347 (626)
+. +..+...-++.++..+...+..+.
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 22 233445555666666655444433
No 197
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=7.3 Score=44.86 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=93.7
Q ss_pred HHHHhhHHHHHHh-ccCCCHHHHHHHHHHHHhhh--hhhc-HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc
Q 006898 315 LAIQHILPCVKEL-SSDSSQHVRSALASVIMGMA--PLLG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (626)
Q Consensus 315 ~~~~~l~~~l~~l-~~d~~~~vr~~~~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~ 390 (626)
.....++..+..+ ..+.+|++|.++++.+.... ..|+ .+...+.+...+.+.+.|.+-.||+.|+.+|+.+...--
T Consensus 1522 ~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~ 1601 (1710)
T KOG1851|consen 1522 HLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSK 1601 (1710)
T ss_pred hhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccc
Confidence 3445666666643 45578999999888776543 3344 334456788889999999999999999999998865421
Q ss_pred hhhHHhhHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Q 006898 391 IDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (626)
Q Consensus 391 ~~~~~~~i~~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~ 467 (626)
.....+..-+..... ....+...+..++..+++++-.++-.. +..+.+..+-....++ ..++.++-+++...-...
T Consensus 1602 ~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1602 FQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred cccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 111111111111111 123345556667777887776554211 2222333333334444 678888888888877766
Q ss_pred ChHH
Q 006898 468 GPEW 471 (626)
Q Consensus 468 ~~~~ 471 (626)
..+|
T Consensus 1681 ~D~W 1684 (1710)
T KOG1851|consen 1681 ADTW 1684 (1710)
T ss_pred hhhh
Confidence 5554
No 198
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.21 E-value=3.8 Score=40.97 Aligned_cols=189 Identities=10% Similarity=0.064 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhhhhhhcHHH--HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCC
Q 006898 333 QHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 410 (626)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 410 (626)
..+-...+.++..+...++... .....+|.++..+-+....+|..|...+..+...++++......+....+....+.
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 3344444445555554444322 23457788888777888899998887777776666665432222222111111111
Q ss_pred hHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH-----HHhhhhHHHHHhhhc
Q 006898 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-----WAMQHITPQVLEMIN 485 (626)
Q Consensus 411 ~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-----~~~~~il~~l~~~l~ 485 (626)
.+-.. +.+.+..++.++.. -..+...++.+...+|.. ...+..+......++
T Consensus 228 -~~~~~--------------------~~~~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn 284 (372)
T PF12231_consen 228 -KLIQL--------------------YCERLKEMIKSKDE--YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFN 284 (372)
T ss_pred -cHHHH--------------------HHHHHHHHHhCcCC--cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhc
Confidence 22222 22333333333111 112333333333333321 123455555666788
Q ss_pred CCChHHHHHHHHHHHHhccccChHH-----hhh-cHHHHHhhhCCCCCc----hHHHHHHHHHHHHHhh
Q 006898 486 NPHYLYRMTILRAISLLAPVMGSEI-----TCS-RLLPVVINASKDRVP----NIKFNVAKVLQSLIPI 544 (626)
Q Consensus 486 ~~~~~vR~~a~~~l~~i~~~~~~~~-----~~~-~~l~~l~~~l~d~~~----~vR~~a~~~l~~i~~~ 544 (626)
++++.+|..|..+...++.....+. ... -..|....+-....+ .+|..+...++.+...
T Consensus 285 ~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 285 SSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 8888888888888887765333221 111 223444433334444 7888888888877644
No 199
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.98 E-value=5.5 Score=41.64 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=85.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc--------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-
Q 006898 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--------LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP- 235 (626)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~- 235 (626)
...+.+++++++...|-...+++++++..+..+. ..+.++..+.+-+.|.+|.+|..|++.+..+.+.-.+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 3456678899999999999999999998876543 2345777888889999999999999999998876554
Q ss_pred hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006898 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (626)
Q Consensus 236 ~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 270 (626)
......+.....+.+.|.+..||+.+++.++.+..
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 22356677888888999999999999998887754
No 200
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.77 E-value=4.1 Score=39.10 Aligned_cols=179 Identities=17% Similarity=0.146 Sum_probs=125.0
Q ss_pred HHHHHHHhhcCC-CHHHHHHHHHhhHHHHhhhchhhHHhh---HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHH
Q 006898 359 LLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQS---LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 434 (626)
Q Consensus 359 l~~~l~~~l~d~-~~~vr~~a~~~L~~~~~~~~~~~~~~~---i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~ 434 (626)
+...+.++|+-. -..|...|++....+.+.+|++.+.+. ..|-+..++...+-.+|-..+..+....-.+|+ ...
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~ 133 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALR 133 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHH
Confidence 344455666532 357888999999999998888876543 345566666777778888888888887666666 333
Q ss_pred ---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC----
Q 006898 435 ---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---- 507 (626)
Q Consensus 435 ---~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~---- 507 (626)
..++..++..+.|+..++-..+...+..+...++.+.+...+.-.+. .++..|..|+..+..-.....
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence 33444556667899999999999999999999988744443333333 567789999988876554433
Q ss_pred --h-H---Hh----hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898 508 --S-E---IT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (626)
Q Consensus 508 --~-~---~~----~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 543 (626)
. + .. ..-+...+...++|++.-|++++.+.|-.-..
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 1 0 00 13456677888899998999988888876443
No 201
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.66 E-value=1.3 Score=45.15 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=59.6
Q ss_pred cchhHHHhhHhHHhcCCCChHHHHHHHH-HHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchh---hhHHHHHHHhhcCC
Q 006898 139 FTARVSACGLFHIAYPSAPDILKTELRS-IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK---TDIMSIFEDLTQDD 214 (626)
Q Consensus 139 ~~~r~~a~~~l~~~~~~~~~~~~~~l~~-~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~ll~~l~~l~~d~ 214 (626)
...|..++.++|.+..+++......+.. .+...+++++..-|..++-.+..++......... +.+.+.+...+.++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 4578999999999999998877777766 6888999999999999999999999877653222 46667777776644
No 202
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=7.2 Score=42.56 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=66.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh--hH---HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~---~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
.+|+..-..++.+++-++|..++..+......+... .+ .....|.+...+.++++-+-..|.+|+.+++...|+=
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 456666667788999999999999888655544321 11 2345677788889999999999999999999887652
Q ss_pred ---HHhhhhHHHHHhhhcC
Q 006898 471 ---WAMQHITPQVLEMINN 486 (626)
Q Consensus 471 ---~~~~~il~~l~~~l~~ 486 (626)
.+.+.++|.+...+.|
T Consensus 882 v~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2346778887765544
No 203
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.63 E-value=0.71 Score=45.35 Aligned_cols=140 Identities=13% Similarity=0.159 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC-------chhHHHHHHHHHHHhhccc-
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-------QDSVRLLAVEGCAALGKLL- 233 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~-------~~~vr~~a~~~l~~l~~~~- 233 (626)
+.....+.+.+.+.+...|..++..|.. +.-...++|+|...+.+. +...-...++...++...-
T Consensus 177 q~yf~~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~ 249 (343)
T cd08050 177 QLYFEEITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN 249 (343)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence 3344444455556677777776666543 333456777777766544 2222233344444444321
Q ss_pred -CchhhhhhhHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCh--HHHHH
Q 006898 234 -EPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRI 298 (626)
Q Consensus 234 -~~~~~~~~i~~~l~~~~----------~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~vr~ 298 (626)
.-+.+...++|.+..++ .+..|..|..++..++.++..++... ....+...+.+.+.|+. ....-
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhh
Confidence 22567777787775433 24679999999999999999887652 22244445555555544 23366
Q ss_pred HHHHhHHHHH
Q 006898 299 AAAGKVTKFC 308 (626)
Q Consensus 299 ~a~~~l~~l~ 308 (626)
+|+.+|..++
T Consensus 330 GAi~GL~~lG 339 (343)
T cd08050 330 GAIVGLSALG 339 (343)
T ss_pred HHHHHHHHhC
Confidence 7777776664
No 204
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=94.59 E-value=4.7 Score=39.03 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=50.7
Q ss_pred HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc
Q 006898 177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS 250 (626)
Q Consensus 177 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~ 250 (626)
..-++-+.+.++++..+++. ..+..++.-..++.|.+..+|..|++.|+.+++. .....+.+.+.+++
T Consensus 38 ~k~k~lasq~ip~~fk~fp~--la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPS--LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLL 105 (460)
T ss_pred hHHHHHHHHHHHHHHhhCch--hhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHH
Confidence 45677788999999888764 3456677778889999999999999999999876 23444444444443
No 205
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.58 E-value=5.1 Score=39.32 Aligned_cols=119 Identities=12% Similarity=0.098 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006898 105 KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184 (626)
Q Consensus 105 ~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~ 184 (626)
+++.++-.+.+....++...+++-++..+++.+...++ ...... ...++...+.++.++.+.++-+-....
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~--lf~~~a-------~~~k~~~~~~fl~ll~r~d~~iv~~~~ 135 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD--LFHDYA-------HKLKRTEWLSFLNLLNRQDTFIVEMSF 135 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH--HHHHHH-------HhhhccchHHHHHHHhcCChHHHHHHH
Confidence 45666666667666677777777777766665432221 111111 011222345566777777777777667
Q ss_pred HhHHHHHHhhCcc--c-hhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcc
Q 006898 185 SNLGKFAATVEPA--H-LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKL 232 (626)
Q Consensus 185 ~~l~~l~~~~~~~--~-~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~ 232 (626)
..++.++...... . ..+.....+...++. .+...+..++++|..+...
T Consensus 136 ~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~ 187 (442)
T KOG2759|consen 136 RILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV 187 (442)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence 7777776643321 1 223344455555555 4556677777787776643
No 206
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.52 E-value=3.2 Score=42.18 Aligned_cols=192 Identities=13% Similarity=0.157 Sum_probs=95.6
Q ss_pred hhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCC------ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 006898 239 VAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (626)
Q Consensus 239 ~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 311 (626)
.+.+...+...+++| ++.--+...++++.+.+...+. .+.+.++|.+...+.....+.--.+.+.++.+.+..
T Consensus 69 l~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~ 148 (435)
T PF03378_consen 69 LQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELR 148 (435)
T ss_dssp HHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444455554 4455566667777766654322 123568888888887665566667778888887765
Q ss_pred ChHHHHHhhHHHHHHhccCCCHHHH---HHHHHHHHhhhhhhcHHH----HHHhHHHHHHHhhcCCCHHHHHHHHHhhHH
Q 006898 312 NPELAIQHILPCVKELSSDSSQHVR---SALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (626)
Q Consensus 312 ~~~~~~~~l~~~l~~l~~d~~~~vr---~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~ 384 (626)
......+.....+..++...-|.-| -++.+.+..+.+.-+... ..+.++.++-+++..+..+ ..+..-|..
T Consensus 149 ~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~ 226 (435)
T PF03378_consen 149 PSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLES 226 (435)
T ss_dssp S--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHH
Confidence 5222222222333333333334322 233334443333322221 2345666677777655433 346677777
Q ss_pred HHhhhchhhH---HhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhChhh
Q 006898 385 VNQVIGIDLL---SQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGF 432 (626)
Q Consensus 385 ~~~~~~~~~~---~~~i~~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~ 432 (626)
+...++.+.+ ...++..+...+ +++........+.+++.++...|+..
T Consensus 227 iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~ 278 (435)
T PF03378_consen 227 IVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDF 278 (435)
T ss_dssp HHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHH
Confidence 7777766554 233333333333 45666666666676666655555543
No 207
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.48 E-value=5.7 Score=39.49 Aligned_cols=215 Identities=16% Similarity=0.161 Sum_probs=117.4
Q ss_pred hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHH----H--HHHHhhcCC-chhHHHHHHHHHHHhhcccC-chhhhhhh
Q 006898 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIM----S--IFEDLTQDD-QDSVRLLAVEGCAALGKLLE-PQDCVAHI 242 (626)
Q Consensus 171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll----~--~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~-~~~~~~~i 242 (626)
++.+. ..||.++.+.+..+...... ...+. + ....+..|. ...-|..|++.+.++.+.-+ .+.+...+
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~~~---l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~v 109 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDEES---LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGV 109 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCHHH---HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHH
Confidence 44444 99999999998887664321 11111 1 122333333 45668899999999988743 24455667
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH------HH
Q 006898 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE------LA 316 (626)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~ 316 (626)
+..+....++++...|..+.+++.+++-..+.-.....-+..+...+.|...++....+.++-.+...-... .-
T Consensus 110 vralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~d 189 (371)
T PF14664_consen 110 VRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFD 189 (371)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCcc
Confidence 777888888888899999999998887654332222334555666666644445555555544444322111 11
Q ss_pred HHhhHHHHHHh----ccCCCH-HHHHHHHHHHHhhhhhhc------HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q 006898 317 IQHILPCVKEL----SSDSSQ-HVRSALASVIMGMAPLLG------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (626)
Q Consensus 317 ~~~l~~~l~~l----~~d~~~-~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~ 385 (626)
.+.++..+... .++... ..-+.+..++..+-+... ...+ .-+..+...|.-+.+++|...+..+-.+
T Consensus 190 L~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 190 LESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 12333333222 111111 112222233333322211 1111 2345566777778888888888777776
Q ss_pred Hhhhch
Q 006898 386 NQVIGI 391 (626)
Q Consensus 386 ~~~~~~ 391 (626)
...-.+
T Consensus 268 lrik~p 273 (371)
T PF14664_consen 268 LRIKPP 273 (371)
T ss_pred HCCCCC
Confidence 654333
No 208
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=94.46 E-value=7.5 Score=40.75 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=43.5
Q ss_pred hhHHhhHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898 392 DLLSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 392 ~~~~~~i~~~l~~~~~~~----~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
+.+.+.++..+.+...|. ...+|..++..+..+.-. ... ..-+.+.+.+-|+.+.+|.-+..+..++.
T Consensus 686 e~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k--D~~---~~~~y~iR~~~dki~~lR~l~yqa~eqI~ 757 (993)
T COG5234 686 EEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK--DSS---GKKLYIIRQTFDKIDSLRGLAYQALEQIR 757 (993)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc--ccc---CCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence 455566777777766443 456888888877774321 111 12235677788999999987777766553
No 209
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.46 E-value=7.1 Score=40.47 Aligned_cols=279 Identities=10% Similarity=0.013 Sum_probs=140.0
Q ss_pred cHHHHHHHHhhHHHHHHhhChHhhhhhhcccccccc--CCchHHHHHHHHHHhccccccCC--cchhhcchHHHhhhhcC
Q 006898 22 DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTV 97 (626)
Q Consensus 22 d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~--~~~~~vr~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~~ 97 (626)
....|..|++.+......+..+ ....+.-....+. +..++.|.++.+.+..+++.-.. ......+...+..-..+
T Consensus 3 ~l~~R~~a~~~l~~~i~~~~~~-~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKYPLS-SIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred CHHHHHHHHHHHHHHHHhCCch-HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 3567899999998887766553 2333333333322 23568999999999888774332 11112222222222233
Q ss_pred cchHHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHHh----------c-CC------------ccchhHHHhhHhHHh
Q 006898 98 EETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLA----------A-GE------------WFTARVSACGLFHIA 152 (626)
Q Consensus 98 ~~~~vR~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~----------~-~~------------~~~~r~~a~~~l~~~ 152 (626)
++-..|-.|..+|..=++.+.. +.+.+.+..++.... + +. +...-.....++..+
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nv 161 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNV 161 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 4455677777777655555432 122222333332222 0 00 000001122223333
Q ss_pred cC----CCChHHHHHHHHHHHHhcCCCC-HHHHHHHHHhHHHHHHh--hCccchhhhHHHHHHHhhcCCchhHHHHHHHH
Q 006898 153 YP----SAPDILKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAAT--VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEG 225 (626)
Q Consensus 153 ~~----~~~~~~~~~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~--~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~ 225 (626)
.. .+.+.....++..+..++..++ ...=+.+...+..+... +|. .-...++..+....+-. +....+-++
T Consensus 162 iKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~-~sl~~~i~vLCsi~~~~--~l~~~~w~~ 238 (464)
T PF11864_consen 162 IKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPS-ESLSPCIEVLCSIVNSV--SLCKPSWRT 238 (464)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCCh-HHHHHHHHHHhhHhccc--ccchhHHHH
Confidence 22 2344566667777777665433 22335677777777653 232 22233444444442222 455556667
Q ss_pred HHHhhcccCchhhhhhhHHHHHHhc--C----CCCHHHHHHHHHHHHHHHHHhCCCcc----ccc--hHHHHHHhcCCCh
Q 006898 226 CAALGKLLEPQDCVAHILPVIVNFS--Q----DKSWRVRYMVANQLYELCEAVGPEPT----RMD--LVPAYVRLLRDNE 293 (626)
Q Consensus 226 l~~l~~~~~~~~~~~~i~~~l~~~~--~----d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~--l~~~l~~~l~d~~ 293 (626)
+.+++..-.. ...+..+...+ . ..+..+-+-|+..++.+....|.+.. ... ++|.+...++..+
T Consensus 239 m~nL~~S~~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~ 314 (464)
T PF11864_consen 239 MRNLLKSHLG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNS 314 (464)
T ss_pred HHHHHcCccH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCC
Confidence 7766643221 22333333333 2 23445556777788877666544322 123 8888888888666
Q ss_pred HHHHHHHHHhHHHHH
Q 006898 294 AEVRIAAAGKVTKFC 308 (626)
Q Consensus 294 ~~vr~~a~~~l~~l~ 308 (626)
+-|-...+..+..+.
T Consensus 315 ~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 315 PRVDYEILLLINRLL 329 (464)
T ss_pred CeehHHHHHHHHHHH
Confidence 555545555554444
No 210
>PF05536 Neurochondrin: Neurochondrin
Probab=94.42 E-value=7.9 Score=40.84 Aligned_cols=177 Identities=15% Similarity=0.128 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHhhcccC--chhhhhhhHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHh-CCC-ccccchHHHHHHhcCC
Q 006898 217 SVRLLAVEGCAALGKLLE--PQDCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAV-GPE-PTRMDLVPAYVRLLRD 291 (626)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~d~~~-~vR~~a~~~l~~l~~~~-~~~-~~~~~l~~~l~~~l~d 291 (626)
..+..|+..|..++..-. .....-.-+|.+...+...+. .+-..++++|..++..- |.+ ......++.+.+.+.+
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh
Confidence 445555555555554100 011222345555555444433 55555555555555211 111 1112334444444433
Q ss_pred ChHHHHHHHHHhHHHHHHhhChH------HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc--------HHHHHH
Q 006898 292 NEAEVRIAAAGKVTKFCRILNPE------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KDATIE 357 (626)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--------~~~~~~ 357 (626)
.+.....++..+..+....+.+ .....+++.+...........|-.++..++.+....+ ......
T Consensus 152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 3345555666666555544422 1123444555554444444555566666666554432 122344
Q ss_pred hHHHHHHHhhcC-CCHHHHHHHHHhhHHHHhhhchhhH
Q 006898 358 QLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLL 394 (626)
Q Consensus 358 ~l~~~l~~~l~d-~~~~vr~~a~~~L~~~~~~~~~~~~ 394 (626)
.+...+..++.. ..+.-|..+....+.+.+..|.+++
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWL 268 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence 566666666664 3577888888888888888888765
No 211
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.36 E-value=1.3 Score=42.36 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=23.2
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH
Q 006898 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 314 (626)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 314 (626)
-++|.++.++.|.++++|..++..+..+.+.++..
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~ 153 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA 153 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh
Confidence 46667777777777777777777776666655444
No 212
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=94.30 E-value=18 Score=44.63 Aligned_cols=250 Identities=16% Similarity=0.134 Sum_probs=139.7
Q ss_pred ccCCchHHHHHHHHHHhccccccCC--------cchhhcchHHHhh-hhcCcchHHHHHHHHHHHHHHhhcChhhHHHhH
Q 006898 56 NNDDDDEVLLAMAEELGVFIPYVGG--------VEHAHVLLPPLET-LCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 126 (626)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~~~~~~~--------~~~~~~l~~~l~~-l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l 126 (626)
+..+++++|..++..+-.+..+... -+....++..+.. ...|.++.+|......+. +...+....+..
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~ 566 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDL 566 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchh
Confidence 3457889999997666554443221 0113334444333 345678888876655554 222222222233
Q ss_pred HHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcC----CCCHHHHHHHHHhHHHHHHhhCc--cchh
Q 006898 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ----DDMPMVRRSAASNLGKFAATVEP--AHLK 200 (626)
Q Consensus 127 ~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~----d~~~~vR~~a~~~l~~l~~~~~~--~~~~ 200 (626)
+........+.....+..+...++.++...+....+.+....+...+ +...++....+.-+..+...... ..+.
T Consensus 567 lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v 646 (2341)
T KOG0891|consen 567 LRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYV 646 (2341)
T ss_pred HHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc
Confidence 34444455666667777788888877776554444444444444433 33333333333333333222111 1223
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCc-
Q 006898 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP- 276 (626)
Q Consensus 201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~- 276 (626)
+.++..+...+.|.+..+-..+..+.+.++...+. ....+..++.+.+.+.|- +..-|.++..+++.+...-|-..
T Consensus 647 ~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~ 726 (2341)
T KOG0891|consen 647 GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVD 726 (2341)
T ss_pred CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEec
Confidence 33445556667788888888899999999988884 223345666666665554 34456777888888876544221
Q ss_pred ---cccchHHHHHHhcC-CChHHHHHHHHHhHHHHH
Q 006898 277 ---TRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFC 308 (626)
Q Consensus 277 ---~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~ 308 (626)
..+.++..+...++ .....+|.+++..++..+
T Consensus 727 p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 727 PYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred ccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 12345555554443 334678888888887544
No 213
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.29 E-value=0.26 Score=42.14 Aligned_cols=130 Identities=17% Similarity=0.245 Sum_probs=82.9
Q ss_pred CcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH-----HHHHHHHHHHHh
Q 006898 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQL 171 (626)
Q Consensus 97 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l 171 (626)
...+.+|..+.-++.++. ...++...+.+..++.....+........+...+..+++..++- ..+.+++.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 346668999988888886 33344555667777777776666667778888888888877652 224566666666
Q ss_pred cC--CCCHHHHHHHHHhHHHHHHhhCc-cchhhhHHHHHHHhhcC-Cchh-HHHHHHHHHH
Q 006898 172 CQ--DDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQD-DQDS-VRLLAVEGCA 227 (626)
Q Consensus 172 ~~--d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~d-~~~~-vr~~a~~~l~ 227 (626)
+. .++..+...+++.+..-+..-.- .....+..+.+.++.+. +++. +|..|+-.|.
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 66 66777888888777664432211 23445566777777743 3444 5666655543
No 214
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=94.22 E-value=5.6 Score=39.28 Aligned_cols=74 Identities=16% Similarity=0.023 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHhccccChHH---hhhcHHHHHhhhCCCC--CchHHHHHHHHHHHHHhhhccchhhhcccchHHhhh
Q 006898 488 HYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLY 562 (626)
Q Consensus 488 ~~~vR~~a~~~l~~i~~~~~~~~---~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l 562 (626)
+...-...++++..+........ ........++.++.++ .+.||..|.+++.++....+.. +...++..+. ..
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~-~~ 252 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLW-KW 252 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHH-HH
Confidence 33344555556655554433221 1233445566666666 8999999999999988775442 4556666666 44
Q ss_pred c
Q 006898 563 L 563 (626)
Q Consensus 563 ~ 563 (626)
+
T Consensus 253 l 253 (339)
T PF12074_consen 253 L 253 (339)
T ss_pred H
Confidence 3
No 215
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.18 E-value=0.68 Score=39.73 Aligned_cols=140 Identities=15% Similarity=0.218 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhc-----CCchhHHHHHHHHHHHhhcc-cC
Q 006898 162 TELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-----DDQDSVRLLAVEGCAALGKL-LE 234 (626)
Q Consensus 162 ~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~-----d~~~~vr~~a~~~l~~l~~~-~~ 234 (626)
+++++.+..+++ +.++.+|+.+++.+|.+...-+- ....+..... +......... +...... ..
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~------~~k~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~ 79 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPY------KHKSIQKSLDSKSSENSNDESTDIS---LPMMGISPSS 79 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcH------HHhcccccCCccccccccccchhhH---HhhccCCCch
Confidence 556666666654 34677888888888877543110 0000000000 1111111111 1111111 12
Q ss_pred chhhhhhhHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 006898 235 PQDCVAHILPVIVNFSQDKSWR-VRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310 (626)
Q Consensus 235 ~~~~~~~i~~~l~~~~~d~~~~-vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 310 (626)
++.+....+..+.+.++|++-. -...+++++..+....|. -.+..+++|.++..++..++..|+.....|+.+...
T Consensus 80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2444555566666666666433 233566666666655543 356677888888888776668888888777776654
No 216
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=94.10 E-value=0.21 Score=38.05 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=52.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCC--ChHHHHHHHHHHHHhccccChHHhhhcHHHHH
Q 006898 447 DKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPVV 519 (626)
Q Consensus 447 d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~--~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l 519 (626)
|+.+.+|..|++.++.++..++.. ..+.+++..+.+.+.|+ +...+.+|+.++..+ |++.+...++|.+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l 89 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL 89 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence 567889999999999999988864 35677888888877765 566888888888876 4455555566654
No 217
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.03 E-value=6 Score=37.99 Aligned_cols=174 Identities=15% Similarity=0.121 Sum_probs=110.1
Q ss_pred HHHHHHhhcCC-chhHHHHHHHHHHHhhcccCchhhh---hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc
Q 006898 204 MSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM 279 (626)
Q Consensus 204 l~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~ 279 (626)
-..+.+.++-. ..-|...|++.-..+.+..+.+... ....|-+..++...+-.||-.....+....-.+|. ....
T Consensus 56 ~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p 134 (307)
T PF04118_consen 56 SKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRP 134 (307)
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHH
Confidence 33445555544 3468888999988888888875432 22344455556666778888888877766555554 2222
Q ss_pred ---chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc-----
Q 006898 280 ---DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----- 351 (626)
Q Consensus 280 ---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~----- 351 (626)
.++..++..++|+..++...+...+..+...++.+.+.+.++-.+. .++.+|..+...+..-.....
T Consensus 135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~ 209 (307)
T PF04118_consen 135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELS 209 (307)
T ss_pred HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccc
Confidence 2333344456788889999999999999999999877777765554 456788888776655433322
Q ss_pred -H-HH---H----HHhHHHHHHHhhcCCCHHHHHHHHHhhH
Q 006898 352 -K-DA---T----IEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (626)
Q Consensus 352 -~-~~---~----~~~l~~~l~~~l~d~~~~vr~~a~~~L~ 383 (626)
. +. . ..-++..+..++.|++.-|++.++.-|-
T Consensus 210 ~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl 250 (307)
T PF04118_consen 210 LSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLL 250 (307)
T ss_pred cchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 0 00 0 1234556666666666666666655443
No 218
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=10 Score=40.25 Aligned_cols=354 Identities=12% Similarity=0.047 Sum_probs=190.9
Q ss_pred HhhHhHHhcCCCChHHHHHHHHHHHHhcC-----C---CCHHHHHHHHHhHHHHHHhhCcc-----chhhhHHHHHHHhh
Q 006898 145 ACGLFHIAYPSAPDILKTELRSIYTQLCQ-----D---DMPMVRRSAASNLGKFAATVEPA-----HLKTDIMSIFEDLT 211 (626)
Q Consensus 145 a~~~l~~~~~~~~~~~~~~l~~~l~~l~~-----d---~~~~vR~~a~~~l~~l~~~~~~~-----~~~~~ll~~l~~l~ 211 (626)
+..++-....+-++...+.+++.+...++ + .+++-...+.+.++.+.....+. ....-+++.+....
T Consensus 390 al~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f 469 (970)
T COG5656 390 ALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF 469 (970)
T ss_pred HHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh
Confidence 33444444444455567778888777662 1 23555667777777777644332 12233556666667
Q ss_pred cCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-cccc---hHHHHHH
Q 006898 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMD---LVPAYVR 287 (626)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~---l~~~l~~ 287 (626)
+++.--.|..+++.+..+...++.......+......++.+.+-.|+..++-++.-+........ ...+ .+.-++.
T Consensus 470 ~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLs 549 (970)
T COG5656 470 RSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLS 549 (970)
T ss_pred cCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHH
Confidence 88888889999999999877777666666667777777888888899998888877765432111 1122 3333444
Q ss_pred hcCCChHHHHHHHHHhH-HHHHHhhChH--HHHHhhH----HHHHHhccCC---CH---HHHHHHHHHHHhhh---hhhc
Q 006898 288 LLRDNEAEVRIAAAGKV-TKFCRILNPE--LAIQHIL----PCVKELSSDS---SQ---HVRSALASVIMGMA---PLLG 351 (626)
Q Consensus 288 ~l~d~~~~vr~~a~~~l-~~l~~~~~~~--~~~~~l~----~~l~~l~~d~---~~---~vr~~~~~~l~~l~---~~~~ 351 (626)
+-++-+-++-..+++.+ +.+.+.+.+- .+...+. .....+..++ +. .-..++...+..+. -.+.
T Consensus 550 LSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSle 629 (970)
T COG5656 550 LSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLE 629 (970)
T ss_pred hcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcc
Confidence 44554455555555443 3344443321 1122222 2333333332 11 12223333333332 2233
Q ss_pred HHH-----HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc-hhhHHhhHHHHHHHHhcCCCh-HHHHHHHHHHHHH
Q 006898 352 KDA-----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLL 424 (626)
Q Consensus 352 ~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~-~~r~~~~~~l~~l 424 (626)
+.. ....+.|.+.-.+++...++-..|+.-+....-... .....-.+...+.++..++.. ..-..+..++..+
T Consensus 630 n~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nf 709 (970)
T COG5656 630 NRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNF 709 (970)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 222 234567777777787777887777776665421110 000112233334444444442 3334455555555
Q ss_pred HHhhCh-----hhHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhh------cCCChHH
Q 006898 425 ASQLGV-----GFFDDKLGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI------NNPHYLY 491 (626)
Q Consensus 425 ~~~~~~-----~~~~~~l~p~l~~~l~d~~~--~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l------~~~~~~v 491 (626)
...-+. ..+...+..+....+...+. +=+..+++.+..++-.++++ ..++.+|.+.+.. .|.....
T Consensus 710 ityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~-Ll~qy~plfi~vags~l~~~dElg~~ 788 (970)
T COG5656 710 ITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDE-LLSQYLPLFISVAGSGLKMIDELGPA 788 (970)
T ss_pred HHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccch-hHHhhhHHHHHHHhhhhhccccccch
Confidence 543222 22334455666666655544 55778888888888887765 3344566555543 3444444
Q ss_pred HHHHHHHH
Q 006898 492 RMTILRAI 499 (626)
Q Consensus 492 R~~a~~~l 499 (626)
+..+++.+
T Consensus 789 sv~aleli 796 (970)
T COG5656 789 SVYALELI 796 (970)
T ss_pred hhhHHHHH
Confidence 55555533
No 219
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=93.90 E-value=1.2 Score=40.66 Aligned_cols=131 Identities=16% Similarity=0.152 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCC-CCHHHHHHH-HHhHHHHHHhhCccchhhhH
Q 006898 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQD-DMPMVRRSA-ASNLGKFAATVEPAHLKTDI 203 (626)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a-~~~l~~l~~~~~~~~~~~~l 203 (626)
...++..+..+.....|..|+.++.......+. ..++.+...+.+ .+|.+-... ...++.+.... +..
T Consensus 52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~ 121 (213)
T PF08713_consen 52 LYELADELWESGYREERYLALLILDKRRKKLTE----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEA 121 (213)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHH
Confidence 344555666666666677777766654433322 233444444433 456554444 34445543321 456
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006898 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (626)
Q Consensus 204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 270 (626)
.+.+.+.+++++.-+|..++..+...... ...+.++..+.....|++..||.+...+|..++.
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 67777888888877777776655433332 3345667777777788888888887777766653
No 220
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.83 E-value=2.2 Score=36.88 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=70.0
Q ss_pred HhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH----HHHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCc-c
Q 006898 124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEP-A 197 (626)
Q Consensus 124 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~-~ 197 (626)
+.+...+..+++++++..|..++.++...+...+.+ .-...+..+...++. +.+.+++.++.++..+.....+ +
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555666777777777777777777777766443 224455556665554 4466889999999988876654 2
Q ss_pred c--------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc
Q 006898 198 H--------LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (626)
Q Consensus 198 ~--------~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (626)
+ ..+.+++.+.++.++ ..+...++.++..+....+.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 2 123455556666665 45566777777777766554
No 221
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.77 E-value=5.6 Score=36.96 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCC--ChHHHHHHHHHHHHhcc
Q 006898 450 YSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAISLLAP 504 (626)
Q Consensus 450 ~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~--~~~vR~~a~~~l~~i~~ 504 (626)
..+|..|+..++..+..++..+ .+.++...+.+.+-|. -+.+...|+.++..+.+
T Consensus 301 ~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 301 YALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence 4699999999999999988753 3466666776655443 46677888888887654
No 222
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.66 E-value=3.3 Score=42.05 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHh----------cCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCC--ChHHHHHHHHHH
Q 006898 434 DDKLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAI 499 (626)
Q Consensus 434 ~~~l~p~l~~~l----------~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~--~~~vR~~a~~~l 499 (626)
...++|.++.++ .|+.+.+|..|+..+..++..++... ...+++..+.+.+.|+ .+.....++..+
T Consensus 286 lh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL 365 (576)
T KOG2549|consen 286 LHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGL 365 (576)
T ss_pred HHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Confidence 345666665553 57789999999999999999988652 4577888888877765 577888888888
Q ss_pred HHhcc
Q 006898 500 SLLAP 504 (626)
Q Consensus 500 ~~i~~ 504 (626)
..+..
T Consensus 366 ~~lg~ 370 (576)
T KOG2549|consen 366 SELGH 370 (576)
T ss_pred HHhhh
Confidence 87754
No 223
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=93.56 E-value=9.7 Score=38.83 Aligned_cols=193 Identities=12% Similarity=0.153 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHhHHHHHHhhCcc------chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcc
Q 006898 160 LKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEPA------HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (626)
Q Consensus 160 ~~~~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~~~~~~------~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (626)
..+.+...+...++++ +|.--+..-++++.+.+..... .+.+.++|.+...++.+..+.--.+.+.++.+.+.
T Consensus 68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL 147 (435)
T ss_dssp HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455556666666654 5778888888888888875531 45678999999999888777777788888888877
Q ss_pred cCchh---hhhhhHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChHHHHHHHHHhH
Q 006898 233 LEPQD---CVAHILPVI-VNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKV 304 (626)
Q Consensus 233 ~~~~~---~~~~i~~~l-~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l 304 (626)
.+... ....++|.+ ...+=+....+ -..+..+..+.+.-+... ..+.++.++.+++.....+ ..+...|
T Consensus 148 ~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL 224 (435)
T PF03378_consen 148 RPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLL 224 (435)
T ss_dssp SS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHH
Confidence 66211 222333333 22221111112 233344444444433322 2345777777887655433 4577888
Q ss_pred HHHHHhhChHH---HHHhhHHHHH-HhccCCCHHHHHHHHHHHHhhhhhhcHHHH
Q 006898 305 TKFCRILNPEL---AIQHILPCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDAT 355 (626)
Q Consensus 305 ~~l~~~~~~~~---~~~~l~~~l~-~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 355 (626)
..+...++.+. +.+.++..+. ++-+.+.++.++..+..++.++...|.+..
T Consensus 225 ~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~l 279 (435)
T PF03378_consen 225 ESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFL 279 (435)
T ss_dssp HHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence 88888887764 2334444333 444567777777777777777666665543
No 224
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=13 Score=40.15 Aligned_cols=172 Identities=10% Similarity=0.099 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc---
Q 006898 218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL--- 289 (626)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~-----~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--- 289 (626)
.|...-+.+...-+.+| +...+.+...+.+++.|.+ |..-.+.+..+..++..+|... ...+|.+.+..
T Consensus 440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asi 516 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASI 516 (982)
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhcccc
Confidence 45555556655555555 3345556666666666554 7777888889999999888654 23455555544
Q ss_pred --CCChHHHHHHHHHhHHHHHHhhChH-HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHH
Q 006898 290 --RDNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFL 364 (626)
Q Consensus 290 --~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~ 364 (626)
+-.++..-..+...++..+..++.+ .+....+|.+.+.+..+.. -..+...+..+++.+.. ..+.+.++..+.
T Consensus 517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~ 594 (982)
T KOG2022|consen 517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCY 594 (982)
T ss_pred ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence 2236778888888899888877654 4456667888777654333 23444457777766543 234556666666
Q ss_pred HhhcC--CCHHHHHHHHHhhHHHHhhhchhhH
Q 006898 365 SLLKD--EFPDVRLNIISKLDQVNQVIGIDLL 394 (626)
Q Consensus 365 ~~l~d--~~~~vr~~a~~~L~~~~~~~~~~~~ 394 (626)
..+.. -.+..|...+.++|.+.+...++..
T Consensus 595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~ 626 (982)
T KOG2022|consen 595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEI 626 (982)
T ss_pred HHhcccccCchHHHHHHHHHHHHHHhccHHhH
Confidence 65543 3578999999999999988876544
No 225
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=93.41 E-value=2.4 Score=40.52 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc
Q 006898 199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (626)
Q Consensus 199 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (626)
.++-++|.++.+++|.++.+|..++.++..+.+..+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~ 152 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA 152 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh
Confidence 3445666666666666666666666666666655544
No 226
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.37 E-value=10 Score=38.50 Aligned_cols=251 Identities=10% Similarity=0.085 Sum_probs=126.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh-ChH-HHHHhhHHH
Q 006898 250 SQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-LAIQHILPC 323 (626)
Q Consensus 250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-~~~~~l~~~ 323 (626)
..+++|.--..+.+.|..+......+. ....++..++.++..+|+.-|......+..+-... +.. .+.+.+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456677766666666666655443322 34467777888888888888888888877755433 222 222334444
Q ss_pred HHHhccCC-CHHHHHHHHHHHHhhhhhhc---HHHHHHhHHHHHHHhhcCCCH-HHHHHHHHhhHHHHhhhchhhHHhhH
Q 006898 324 VKELSSDS-SQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGIDLLSQSL 398 (626)
Q Consensus 324 l~~l~~d~-~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~L~~~~~~~~~~~~~~~i 398 (626)
+.+...+. ...--..+++.++.+...+. ++.....+...++.+.+.+.. ........++..+.+. ...+...+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k--dp~l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK--DPSLAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh--CchhHHHH
Confidence 44444322 22223445556666655443 233333333444444444321 1122233333333321 11122345
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHH---HHHHHHHHhcCCchHHHHHHHHHHHHH--HHHhChHHHh
Q 006898 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNLKRL--AEEFGPEWAM 473 (626)
Q Consensus 399 ~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~---l~p~l~~~l~d~~~~VR~~a~~~l~~l--~~~~~~~~~~ 473 (626)
+..+.+..--.+..-....+..+..+....++..+... +...+-.++++++..|-+.|+..+..= ...+.. ..
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--~~ 334 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--NS 334 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--TH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--Ch
Confidence 55555555556666777788888888887777666543 445566678899999988888665322 222111 12
Q ss_pred hhhHHHHHhh----hc-CCChHHHHHHHHHHHHhcc
Q 006898 474 QHITPQVLEM----IN-NPHYLYRMTILRAISLLAP 504 (626)
Q Consensus 474 ~~il~~l~~~----l~-~~~~~vR~~a~~~l~~i~~ 504 (626)
..++|.+... .+ +=|..+|..+..++..+.+
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344444332 22 2255577777666665544
No 227
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=13 Score=37.98 Aligned_cols=354 Identities=13% Similarity=0.145 Sum_probs=181.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhh
Q 006898 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (626)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (626)
++.++..+..+.+.++ .+|-+.+-+++.++-.++ .+.+.+...+..+.+++ +.++ .+-.+.+.+|++....
T Consensus 61 rdsl~thl~~l~~~~~-~i~tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~-~~~~-----~lLeiL~VlPEE~~~~ 131 (559)
T KOG2081|consen 61 RDSLITHLKELHDHPD-VIRTQLAVAVAALALHMP--EWVNPIFELVRALSNKH-PAVP-----ILLEILKVLPEETRDI 131 (559)
T ss_pred HHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCC-ccHH-----HHHHHHHhCcHhhcch
Confidence 3445555555555554 888888889999888776 23333444444444433 3322 3333444444432110
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh---HHHHHHHHHhHHHHHH--hhChHH
Q 006898 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE---AEVRIAAAGKVTKFCR--ILNPEL 315 (626)
Q Consensus 241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~l~~--~~~~~~ 315 (626)
... . ...-|.....-+ +.. ...++..+..++++++ ..+-..++++++.... .+.++.
T Consensus 132 ~~~-----~----~a~Rr~e~~~~l---~~~------~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~ 193 (559)
T KOG2081|consen 132 RLT-----V----GANRRHEFIDEL---AAQ------VSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQ 193 (559)
T ss_pred hhh-----h----hhhhHHHHHHHH---HHh------HHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHH
Confidence 000 0 000111111111 111 1233444444444322 4455566666666555 344443
Q ss_pred HHH--hhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh-cHHH---HH------HhHHHHHHHh-hcCCCHHHHHHHHHhh
Q 006898 316 AIQ--HILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKDA---TI------EQLLPIFLSL-LKDEFPDVRLNIISKL 382 (626)
Q Consensus 316 ~~~--~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~-~~~~---~~------~~l~~~l~~~-l~d~~~~vr~~a~~~L 382 (626)
+.. .++..+...+++. ..-..+.+++..+.... ..+. +. ..++|...++ ...++.+-+.+..+-+
T Consensus 194 v~a~~pLi~l~F~sl~~~--~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIF 271 (559)
T KOG2081|consen 194 VLASFPLITLAFRSLSDD--ELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIF 271 (559)
T ss_pred HHhhhHHHHHHHHHcccc--hhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHH
Confidence 322 2333444444422 22233333333322111 0000 11 1223332222 2244566666666666
Q ss_pred HHHHhhh------chhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh---HHHHHHHHHHHHh--------
Q 006898 383 DQVNQVI------GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWL-------- 445 (626)
Q Consensus 383 ~~~~~~~------~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l-------- 445 (626)
..+++.+ +++.. -.++..+.-....++|++-......+..+.+.+-... ....+-|++.+++
T Consensus 272 tel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~q 350 (559)
T KOG2081|consen 272 TELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQ 350 (559)
T ss_pred HHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHcc
Confidence 6665543 22211 2344455555678888888888887777776543211 1122233333222
Q ss_pred -----------cCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhc
Q 006898 446 -----------QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSR 514 (626)
Q Consensus 446 -----------~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~ 514 (626)
.|+....|......+..+...+|.+.-.....-.+.+ +.+.|..-++++..+..+++...+.. +.
T Consensus 351 lp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~ 426 (559)
T KOG2081|consen 351 LPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NT 426 (559)
T ss_pred CCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cc
Confidence 1233567899999999999888876433333333322 56789999999999999999877642 45
Q ss_pred HHHHHhhhCC--CCCchHHHHHHHHHHHHHhhhccc
Q 006898 515 LLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQS 548 (626)
Q Consensus 515 ~l~~l~~~l~--d~~~~vR~~a~~~l~~i~~~~~~~ 548 (626)
++|.+++... +....+|..++-.+|.+.+.....
T Consensus 427 i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~ 462 (559)
T KOG2081|consen 427 IMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQH 462 (559)
T ss_pred hHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhC
Confidence 5665555442 222349999999999998887653
No 228
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.60 E-value=11 Score=36.76 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=62.3
Q ss_pred hhcCCCHHHHHHHHHhhHHHHhhhchhhHH--hhHHHHHHHHhcC----CChHHHHHHHHHHHHHHHhh--ChhhHHHHH
Q 006898 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQL--GVGFFDDKL 437 (626)
Q Consensus 366 ~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~--~~i~~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~--~~~~~~~~l 437 (626)
.+..+|..+...++..+..+...-+..... +.+++.+.+.+.+ ++......++..+..+...- ...++....
T Consensus 113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~ 192 (312)
T PF03224_consen 113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNG 192 (312)
T ss_dssp H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCc
Confidence 444445555555555555544332221110 1333444333322 22233344455555544321 111222444
Q ss_pred HHHHHHHh-----cCCc--hHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhhcC-CChHHHHHHHHHHHHhccc
Q 006898 438 GALCMQWL-----QDKV--YSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPV 505 (626)
Q Consensus 438 ~p~l~~~l-----~d~~--~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~l~~-~~~~vR~~a~~~l~~i~~~ 505 (626)
++.+...+ .++. ..+...++-|+..+. +.++ .....++|.+.+.+++ ...++-..++.++.+++..
T Consensus 193 v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 193 VSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS--FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHHHHT--TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh--cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 55555555 2222 334445555544442 3322 2234488888887654 5677777788888888765
Q ss_pred cC
Q 006898 506 MG 507 (626)
Q Consensus 506 ~~ 507 (626)
..
T Consensus 271 ~~ 272 (312)
T PF03224_consen 271 AP 272 (312)
T ss_dssp SS
T ss_pred cH
Confidence 54
No 229
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=92.58 E-value=12 Score=37.06 Aligned_cols=406 Identities=11% Similarity=0.061 Sum_probs=186.7
Q ss_pred ccCCchHHHHHHHHHHhccccccC-Ccch-----hhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh--hHH----
Q 006898 56 NNDDDDEVLLAMAEELGVFIPYVG-GVEH-----AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLV---- 123 (626)
Q Consensus 56 ~~~~~~~vr~~~~~~l~~~~~~~~-~~~~-----~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--~~~---- 123 (626)
+...+..|+...+.++....+.-- ...+ ...++.++...-++++.+|-..+.++++.++-..... .+.
T Consensus 51 i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG 130 (604)
T KOG4500|consen 51 IMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG 130 (604)
T ss_pred eeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence 344566788888888776654110 0111 2345566777777778889999999999998754431 111
Q ss_pred -HhHHHHHHHHhcCCccchhHHHhhHhHHhcCCC--ChHHHH-----HHHHHHHHhcC--CCCHHHHHHHHHhHHHHHHh
Q 006898 124 -DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA--PDILKT-----ELRSIYTQLCQ--DDMPMVRRSAASNLGKFAAT 193 (626)
Q Consensus 124 -~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~--~~~~~~-----~l~~~l~~l~~--d~~~~vR~~a~~~l~~l~~~ 193 (626)
+.++..+...+..+++.........++.+.... +++.+. .+++.+..... -.+...-....-.+..+.+.
T Consensus 131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~ 210 (604)
T KOG4500|consen 131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF 210 (604)
T ss_pred ceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH
Confidence 124555555555555444333333333332221 112221 12332322221 11222222222222222221
Q ss_pred ----hCccchhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccC------chhhhhhhHHHHHHhcCCCCHHHHHHHH
Q 006898 194 ----VEPAHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVA 262 (626)
Q Consensus 194 ----~~~~~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~------~~~~~~~i~~~l~~~~~d~~~~vR~~a~ 262 (626)
+.+......+.-.+.+++.. ..+..+..+++.+...++.-. .......++..+.+.-.+.+.. ...
T Consensus 211 ~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~---d~~ 287 (604)
T KOG4500|consen 211 VCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKT---DML 287 (604)
T ss_pred HHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchH---HHH
Confidence 11111111122222222221 234455566666655544311 1112222333333322221111 111
Q ss_pred HHHHHHHHH-----hCCCc-----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh------HHHHHhhHHHHHH
Q 006898 263 NQLYELCEA-----VGPEP-----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ELAIQHILPCVKE 326 (626)
Q Consensus 263 ~~l~~l~~~-----~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~ 326 (626)
..+...++. .|.+. ...+++..+...+...+.+....+.-+++.|+..-.. ..+.+.++..+.+
T Consensus 288 ~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 288 NLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 112112211 13322 1234777777788877888888888888888764322 1233444444443
Q ss_pred -hccCCCHHHHHHHHHHHHhhhh-hhcHHHHH-HhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH------Hhh
Q 006898 327 -LSSDSSQHVRSALASVIMGMAP-LLGKDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQS 397 (626)
Q Consensus 327 -l~~d~~~~vr~~~~~~l~~l~~-~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~------~~~ 397 (626)
-..|.+..+.-+++.++..+.- ...+..+. .-+...++.+++-..|.|.-.-..++.-+... .+++ ...
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~--qe~~a~eL~kn~~ 445 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDS--QEYIACELAKNPE 445 (604)
T ss_pred hcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhc--hHHHHHHHhcCHH
Confidence 3446677777888888887652 22222121 22444556666666666655555444433221 1111 124
Q ss_pred HHHHHHHHhcCCChH-HHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 006898 398 LLPAIVELAEDRHWR-VRLAIIEYIPLLASQLGVGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (626)
Q Consensus 398 i~~~l~~~~~~~~~~-~r~~~~~~l~~l~~~~~~~~-----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (626)
++..+....+++++. +-....+.+..+.+...-+. ..+..+.....++...+-..+..|.-++..+...
T Consensus 446 l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 446 LFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred HHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 556666666666543 44444444444444311000 0011233344444455556666666666555443
No 230
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.47 E-value=0.43 Score=42.27 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=56.3
Q ss_pred hhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 473 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 473 ~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
.+..++.+.++.-+++..+|..|++.++.+.+. | -.--....|.+..+..|+++.+|..|...+..+.++++.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-G-LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ-G-LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-C-CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 456778888888888888999999888887752 1 001246788888899999999999999999888887754
No 231
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.39 E-value=32 Score=43.65 Aligned_cols=162 Identities=15% Similarity=0.053 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh----ChH------HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF----GPE------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (626)
Q Consensus 435 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~----~~~------~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~ 504 (626)
..+++.+...+...+..++..+..++..+.... |.. .....+++.+.++..++.|.-|.+.+..++-+.+
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 456778888888889999999999988887643 322 1347788888888999999999999999988888
Q ss_pred ccChHH---hhhcHHHHHhhhCCCCCchHHH--------HHHHHHHHHHhhhccc----hhhhcccchHHhhhccCCCcc
Q 006898 505 VMGSEI---TCSRLLPVVINASKDRVPNIKF--------NVAKVLQSLIPIVDQS----VSTFSVSPFSFMLYLNVNNFN 569 (626)
Q Consensus 505 ~~~~~~---~~~~~l~~l~~~l~d~~~~vR~--------~a~~~l~~i~~~~~~~----~~~~~i~~~l~~~l~~d~d~~ 569 (626)
...... +...++..+...++|...++-. .....+..+....+.. .....+...+. .-+.+++..
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv-~eL~npN~~ 1141 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLV-LELFNPNSD 1141 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHcCCchH
Confidence 776432 2334444555555555544333 2233333322222211 33345555555 667788889
Q ss_pred cccccccCchhHHHHHHHHHHHHHhhcCCcccccchh
Q 006898 570 VGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSL 606 (626)
Q Consensus 570 vr~~~~~~~~~~~a~~al~~~~~~~~~~~~~~~~~~~ 606 (626)
||. ++...|..+.+..+..-...+....
T Consensus 1142 VR~---------~~~~~L~~i~~~s~~~v~~L~~p~K 1169 (3550)
T KOG0889|consen 1142 VRE---------FSQKLLRLISELSGKSVVKLLEPFK 1169 (3550)
T ss_pred HHH---------HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 999 9999999998777555554444333
No 232
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.38 E-value=3 Score=36.07 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=59.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHH---HHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHhChHH
Q 006898 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEW 471 (626)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~---~l~p~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~~ 471 (626)
......+.+++++++..-|..++..+..+.+..+.+.+.+ ..+..++..++.++ ..++..++.++..+.....+.
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~- 102 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK- 102 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC-
Confidence 4555555666666666666666666666665555554432 23333444443322 234444445544444333221
Q ss_pred HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 472 AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 472 ~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
..-.|+.+.- ..+.+++.++.++++ ..+...++.+|..+...++.
T Consensus 103 ----------------p~l~Rei~tp-------------~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 103 ----------------PTLTREIATP-------------NLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred ----------------CchHHHHhhc-------------cHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 0001111111 123344555555554 66677778888887776654
No 233
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=92.05 E-value=2.4 Score=35.79 Aligned_cols=141 Identities=20% Similarity=0.213 Sum_probs=81.8
Q ss_pred HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCC-CCH
Q 006898 177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSW 255 (626)
Q Consensus 177 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~ 255 (626)
+-||...+.++..++...-++. |+.+++.+.+.++.+ +......+..|..+.+.+.. ..++ ...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~ 66 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITD-------------FRRSSLSQ 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHT-------------SHCCHSHH
T ss_pred hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHh-------------hhchhhhH
Confidence 4578889999999988775543 567778888777764 55555666666665543321 0011 112
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC----ChHHHHHHHHHhHHHHHHhhChHHHHH-hhHHHHHHhccC
Q 006898 256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD----NEAEVRIAAAGKVTKFCRILNPELAIQ-HILPCVKELSSD 330 (626)
Q Consensus 256 ~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~-~l~~~l~~l~~d 330 (626)
..|...-..+..-. +.++..+.+.+.. ...++...+++++..+....+...+.+ .+++.+.+++.+
T Consensus 67 ~r~~~l~~~l~~~~---------~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~ 137 (148)
T PF08389_consen 67 ERRRELKDALRSNS---------PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS 137 (148)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC
Confidence 22333333333221 2344444444432 227788888888888888777665444 477777777754
Q ss_pred CCHHHHHHHHHHH
Q 006898 331 SSQHVRSALASVI 343 (626)
Q Consensus 331 ~~~~vr~~~~~~l 343 (626)
++ .+.++++++
T Consensus 138 ~~--~~~~A~~cl 148 (148)
T PF08389_consen 138 PE--LREAAAECL 148 (148)
T ss_dssp CC--CHHHHHHHH
T ss_pred HH--HHHHHHHhC
Confidence 43 366666553
No 234
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.88 E-value=0.3 Score=30.54 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=22.9
Q ss_pred hcHHHHHhhhCCCCCchHHHHHHHHHHHHH
Q 006898 513 SRLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (626)
Q Consensus 513 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~ 542 (626)
...+|.|..+++++++.||..|+++|+++.
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456777888888888888888888887764
No 235
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=91.82 E-value=20 Score=38.17 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=84.7
Q ss_pred HHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh---cCCChHHHHHHHHHHHHHHHhhChhhH------------HHHH
Q 006898 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFF------------DDKL 437 (626)
Q Consensus 373 ~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~~~------------~~~l 437 (626)
++|...-..+..+ ..++++.+...+-..+...+ ++.+|..-+.++..+-.+++++....+ ...+
T Consensus 414 e~RkkLk~fqdti-~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~ 492 (980)
T KOG2021|consen 414 EVRKKLKNFQDTI-VVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLN 492 (980)
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHH
Confidence 4555443333333 33455544444444444333 456899999999999999887643221 1223
Q ss_pred HHHHHH--HhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh------hcCCChHHHHHHHHHHHHhccccChH
Q 006898 438 GALCMQ--WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM------INNPHYLYRMTILRAISLLAPVMGSE 509 (626)
Q Consensus 438 ~p~l~~--~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~------l~~~~~~vR~~a~~~l~~i~~~~~~~ 509 (626)
++.+.. ....+++.|...-.+.+......+..+ ..-+|.++.. +.+.+..||..+...+.++++.+...
T Consensus 493 ~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkq 569 (980)
T KOG2021|consen 493 ELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQ 569 (980)
T ss_pred HHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHH
Confidence 333322 234566677766666666655444322 2345555553 44568999999999999998866543
Q ss_pred --HhhhcHHHHHhhhC
Q 006898 510 --ITCSRLLPVVINAS 523 (626)
Q Consensus 510 --~~~~~~l~~l~~~l 523 (626)
.+.+.++..+..++
T Consensus 570 lvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 570 LVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 24455555555544
No 236
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=91.82 E-value=19 Score=37.83 Aligned_cols=52 Identities=10% Similarity=-0.157 Sum_probs=35.9
Q ss_pred HHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhC
Q 006898 144 SACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE 195 (626)
Q Consensus 144 ~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~ 195 (626)
..+..+..+....++...+++-..+++.+=+++.....-+.....-+++...
T Consensus 247 ~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygt 298 (559)
T PF14868_consen 247 HVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGT 298 (559)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcch
Confidence 3445555555556777888888888877667888888877777766665433
No 237
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.80 E-value=22 Score=38.61 Aligned_cols=339 Identities=12% Similarity=0.068 Sum_probs=175.7
Q ss_pred hhhHHHHHHHhhcCCc-----hhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc-----CCCCHHHHHHHHHHHHHHH
Q 006898 200 KTDIMSIFEDLTQDDQ-----DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-----QDKSWRVRYMVANQLYELC 269 (626)
Q Consensus 200 ~~~ll~~l~~l~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-----~d~~~~vR~~a~~~l~~l~ 269 (626)
.+.+...+.+.+.|.+ +..-.+++..+..+++..+... ..-+|-+.+.+ +-.++..-.++...+|..+
T Consensus 460 l~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s 537 (982)
T KOG2022|consen 460 LDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLS 537 (982)
T ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccccccCChhHHHHHHHHHHHHH
Confidence 3444555555555554 4566788888999998888742 22234333322 2236666677788999998
Q ss_pred HHhCCCc-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccC--CCHHHHHHHHHHHH
Q 006898 270 EAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSD--SSQHVRSALASVIM 344 (626)
Q Consensus 270 ~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d--~~~~vr~~~~~~l~ 344 (626)
..++... ..+..+|.+.+.++.+ +.-..++.++..+++.+..+ .+...++..+.+.+.. -....|..+.+++|
T Consensus 538 ~~l~e~P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIG 615 (982)
T KOG2022|consen 538 NWLGEHPMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIG 615 (982)
T ss_pred HHHhcCCcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence 8887653 4457788888888744 34455677788888866543 2234444444444432 23467888888888
Q ss_pred hhhhhhcHHHHHHhHHH---HHHHhhc------CCCHHHHHHHHHhh---HHHHhhhc----------------------
Q 006898 345 GMAPLLGKDATIEQLLP---IFLSLLK------DEFPDVRLNIISKL---DQVNQVIG---------------------- 390 (626)
Q Consensus 345 ~l~~~~~~~~~~~~l~~---~l~~~l~------d~~~~vr~~a~~~L---~~~~~~~~---------------------- 390 (626)
.+......+.....++. .+...++ -++++-+...+-.+ +.+...+.
T Consensus 616 yvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~ 695 (982)
T KOG2022|consen 616 YVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFP 695 (982)
T ss_pred HHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCC
Confidence 88776665544333322 2222221 12233333222222 22221110
Q ss_pred hhhHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHHhhChhhHHHH----HHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898 391 IDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDK----LGALCMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 391 ~~~~~~~i~~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~~~~~~----l~p~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
.-.+..+++|.+.+... -.+..+-.+++..+..-....+.. |... +.+.+.+....+... ++.....+.
T Consensus 696 il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~r~~~~~~a~----tl~l~~~~l 770 (982)
T KOG2022|consen 696 ILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIVRFLTSCLAV----TLSLIAACL 770 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHHHhccchHHH----HHHHHHHHH
Confidence 01123455666555432 112223333333332222333333 3333 334444422221111 111111111
Q ss_pred -HHhChHHH-------hhhhHHHHHhhhc----CCChHHHHHHHHHHHHhccccCh------HHhhhcHHHHHhhhCCCC
Q 006898 465 -EEFGPEWA-------MQHITPQVLEMIN----NPHYLYRMTILRAISLLAPVMGS------EITCSRLLPVVINASKDR 526 (626)
Q Consensus 465 -~~~~~~~~-------~~~il~~l~~~l~----~~~~~vR~~a~~~l~~i~~~~~~------~~~~~~~l~~l~~~l~d~ 526 (626)
..++.... ....+.....++. .++++.-.....++.++.+..+. ..+..-+++....+++.+
T Consensus 771 ~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~p 850 (982)
T KOG2022|consen 771 LAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSP 850 (982)
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCC
Confidence 01111100 1111222222222 24677777777788887765432 246677888888899999
Q ss_pred CchHHHHHHHHHHHHHhhhcc
Q 006898 527 VPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 527 ~~~vR~~a~~~l~~i~~~~~~ 547 (626)
.+---.++++-+..+....++
T Consensus 851 E~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 851 EPTTIRAASQFLTALATYATS 871 (982)
T ss_pred ccHHHHHHHHHHHHHHhhccc
Confidence 988777888988888776555
No 238
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=91.72 E-value=21 Score=38.12 Aligned_cols=124 Identities=13% Similarity=0.104 Sum_probs=81.0
Q ss_pred HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhh
Q 006898 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (626)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~ 397 (626)
..++..|..+..|+-..|+..++..+..+...-+++ ...++-.+++-|.|++..+-..|.-.|..+....+.= .-.
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM--K~V 378 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM--KIV 378 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc--eee
Confidence 455677778888888899988888777776544433 3457778888899998888777777776664433221 123
Q ss_pred HHHHHHHHhcCCC--hHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh
Q 006898 398 LLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (626)
Q Consensus 398 i~~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l 445 (626)
++..+.+++--++ .+-...++.++.++.-......+.+.++.+++.++
T Consensus 379 vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lF 428 (988)
T KOG2038|consen 379 VIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLF 428 (988)
T ss_pred hHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHH
Confidence 5566666665443 45555577777776655555556666776665554
No 239
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.52 E-value=2.8 Score=42.47 Aligned_cols=141 Identities=14% Similarity=0.211 Sum_probs=86.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhhcc---c----
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKL---L---- 233 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~-~~vr~~a~~~l~~l~~~---~---- 233 (626)
+-...-+.+.+.+.++..|+.|++.|.. +.-.+.++|+|...+.+.. ..+-...+..|..+... +
T Consensus 206 QlYy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np 278 (576)
T KOG2549|consen 206 QLYYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNP 278 (576)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCC
Confidence 3344455555666788899988887754 3334668888888776652 12222222223222221 1
Q ss_pred --CchhhhhhhHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCh--HHHH
Q 006898 234 --EPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVR 297 (626)
Q Consensus 234 --~~~~~~~~i~~~l~~~~----------~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~vr 297 (626)
--+.|...++|.+..++ .|..|.+|--++..+..++..++... ....+...+.+.+.|+. +...
T Consensus 279 ~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~ 358 (576)
T KOG2549|consen 279 NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTH 358 (576)
T ss_pred ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhh
Confidence 11567777777765432 35688999999999999888776432 22345556666666653 5677
Q ss_pred HHHHHhHHHHHH
Q 006898 298 IAAAGKVTKFCR 309 (626)
Q Consensus 298 ~~a~~~l~~l~~ 309 (626)
-+++..|..++.
T Consensus 359 YGai~gL~~lg~ 370 (576)
T KOG2549|consen 359 YGAIAGLSELGH 370 (576)
T ss_pred hhHHHHHHHhhh
Confidence 778877777765
No 240
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=91.49 E-value=12 Score=37.17 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=75.9
Q ss_pred HHHHHHhhcCCC--HHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChh---hH
Q 006898 360 LPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG---FF 433 (626)
Q Consensus 360 ~~~l~~~l~d~~--~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~---~~ 433 (626)
+..++.++..++ ..||..+.+.|..+...-.-+.....-+..+..+.+. +........+..++.+.+..... .+
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv 261 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV 261 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344556665443 4678888888877755433333322223344444432 22344444555566655543221 11
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (626)
Q Consensus 434 ~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~ 504 (626)
....+..++-+..-.++.+-..++-+|+.+.-.-+... ....+-..+..+....+.-.|..+|-++..++.
T Consensus 262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 12223333344444557766667777787766544332 123333334444555677788888888877753
No 241
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.34 E-value=1.9 Score=41.91 Aligned_cols=108 Identities=21% Similarity=0.232 Sum_probs=84.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH---HhhhcH
Q 006898 441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRL 515 (626)
Q Consensus 441 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~---~~~~~~ 515 (626)
++..+...+..||..|...+..+....... .....+++.+..+..|.+..+|....+.+..++....++ .+...+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 444566778889999999888887763332 134667788888889999999999999888876655443 356678
Q ss_pred HHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc
Q 006898 516 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (626)
Q Consensus 516 l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~ 548 (626)
+|++...+..-.+++|.-+...+..+...+++.
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 889999999999999999999999988888663
No 242
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=91.24 E-value=7.6 Score=34.61 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHH
Q 006898 336 RSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV 413 (626)
Q Consensus 336 r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 413 (626)
-..+...++.+...+|.. .....++..+..+-.+++...|..+-.+++.....+|++.+.+ ++|.-... .+....-
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~~ 94 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQPG 94 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCcc
Confidence 333444444444444432 1222333334444455566777777777887777777765532 33321111 1111222
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 006898 414 RLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443 (626)
Q Consensus 414 r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~ 443 (626)
|.-.+-.+..-.....-.+|.++++|....
T Consensus 95 raWLLPlLr~~i~~~~L~fF~~~~lPla~~ 124 (198)
T PF08161_consen 95 RAWLLPLLRDHIRNASLSFFVEEFLPLARR 124 (198)
T ss_pred cchhHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 222333333222233445677777776544
No 243
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.98 E-value=2.2 Score=35.80 Aligned_cols=75 Identities=11% Similarity=0.146 Sum_probs=60.3
Q ss_pred hhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHh----hhcHHHHHhhhCCC-CCchHHHHHHHHHHHHHhhhccc
Q 006898 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQS 548 (626)
Q Consensus 474 ~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~----~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~i~~~~~~~ 548 (626)
...+..|.+.+.++|+.+...|+..+..+++.||..+. ...++..|.+++++ ..+.||..++..+..+...++++
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 44566677777889999999999999999999997643 34677778888877 77899999999999998877654
No 244
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=90.97 E-value=4.5 Score=37.56 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhHHHHhhhchhhHHhhHHHHH----HHHh--cCCChHHHHHHHHHHHHHHH
Q 006898 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAI----VELA--EDRHWRVRLAIIEYIPLLAS 426 (626)
Q Consensus 372 ~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l----~~~~--~~~~~~~r~~~~~~l~~l~~ 426 (626)
..+|.-|+..++.++..++.... .+-|.+ .+.. .++.+.....++..+..+.+
T Consensus 301 ~alRd~AA~ll~yV~~~F~~~Yk--tLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 301 YALRDVAADLLKYVFSNFSSSYK--TLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhh--hhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence 45888888888888888776542 233333 2222 22345555666666655443
No 245
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=14 Score=34.78 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=56.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc---ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH-HHHHhhH
Q 006898 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQHIL 321 (626)
Q Consensus 246 l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~ 321 (626)
+..++.+.++.||..++..+..+... |...+ ....++.+.++++|..+ .+.|+.++..++..-+-. .+.+.++
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455666666666666554443322 11111 23567777778877766 445566666666543222 2233355
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhh
Q 006898 322 PCVKELSSDSSQHVRSALASVIMGMAP 348 (626)
Q Consensus 322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~ 348 (626)
..+...+.|+.|..-..++..+.++++
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 556666677766666666666666654
No 246
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.83 E-value=6 Score=33.15 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc----hhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCc
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP 235 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (626)
.+.+..+.+-+.+.++.|...++..+..++++.|... ....++..+.+++.+ ....|+...+..+...+..+..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3445555566677778888888888888888877632 123456666666666 4667777777777777666654
No 247
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.78 E-value=8.5 Score=37.48 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh------hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006898 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD------CVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (626)
Q Consensus 203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~ 269 (626)
....+.++++.+|+.++..++..+..+....+... ..+.++.++....+..+..+...++.+++.+.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 34445557777888899999999998887766522 22233333333333344455566666666664
No 248
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=34 Score=39.83 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=50.5
Q ss_pred CchhHHHHHHHHHHHhhcccCchhh---hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHh
Q 006898 214 DQDSVRLLAVEGCAALGKLLEPQDC---VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRL 288 (626)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~ 288 (626)
.|+..|..|+..+..+.+....+.. .+.....+.++..|.+..||...-..+..+...+++.. +...++|...-.
T Consensus 53 kD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~ 132 (1312)
T KOG0803|consen 53 RDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGG 132 (1312)
T ss_pred cChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhe
Confidence 4455566666666665554443222 12222334556667777777777666666666555442 233556666666
Q ss_pred cCCChHHHHHHHHHhHHH
Q 006898 289 LRDNEAEVRIAAAGKVTK 306 (626)
Q Consensus 289 l~d~~~~vr~~a~~~l~~ 306 (626)
..|.+..|-.+|...+..
T Consensus 133 ~~d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 133 QFDLDYPVSEAAKASFKD 150 (1312)
T ss_pred ecccchHHHHHHHHHHHh
Confidence 666666665555554433
No 249
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.67 E-value=2.9 Score=40.76 Aligned_cols=107 Identities=16% Similarity=0.071 Sum_probs=77.8
Q ss_pred HHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh---hhhh
Q 006898 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD---CVAH 241 (626)
Q Consensus 167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~ 241 (626)
-++..+++.+..||+.+...+..+....+.. .....+++.+..+..|.+..||....+.+..++....++. ....
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 3445568888999999999998887773321 1233466777788889999999999998888776655533 4455
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 006898 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 273 (626)
Q Consensus 242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~ 273 (626)
+++++...+.+-.+.+|..+...+..+...++
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 67777777777788888888777777776654
No 250
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=38 Score=39.02 Aligned_cols=213 Identities=12% Similarity=0.097 Sum_probs=117.7
Q ss_pred cCCccchhHHHhhHhHHhcCCCChH---HHHHHHHHHHHhcCCC---CHHHHHHHHHhHHHHHHhhCc---cchhhhHHH
Q 006898 135 AGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDD---MPMVRRSAASNLGKFAATVEP---AHLKTDIMS 205 (626)
Q Consensus 135 ~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~---~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~ 205 (626)
..+...+|.....++-.+.+..++. .+..+.+.+-...+.. ...+-+.+..++.-+...+-+ ..-...+++
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 4445667887778777777766652 2555555555443322 233333344444444433221 111223344
Q ss_pred HHHHhh-cCCchhHHHHHHHHHHHhhcccCc-----------------------------hhhhhhhHHHHHHhcCCCCH
Q 006898 206 IFEDLT-QDDQDSVRLLAVEGCAALGKLLEP-----------------------------QDCVAHILPVIVNFSQDKSW 255 (626)
Q Consensus 206 ~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~-----------------------------~~~~~~i~~~l~~~~~d~~~ 255 (626)
.+.... +.+|-.+-..|+..+-.+.+.+.. +..+-.++..+.+++.|...
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~ 1011 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRA 1011 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchH
Confidence 333332 223344545555555444443321 12233456677889999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcC-------CC--hHHHH----HHHHHhHHHHHHhhC------
Q 006898 256 RVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLR-------DN--EAEVR----IAAAGKVTKFCRILN------ 312 (626)
Q Consensus 256 ~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~-------d~--~~~vr----~~a~~~l~~l~~~~~------ 312 (626)
.||..|++++-++...-|... +..-+..++..++. ++ ..+++ +...-.++.+++.+.
T Consensus 1012 eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~l 1091 (1610)
T KOG1848|consen 1012 EVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLL 1091 (1610)
T ss_pred HHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999988876655443 22233344444443 11 01221 223444455554332
Q ss_pred -----hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhh
Q 006898 313 -----PELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (626)
Q Consensus 313 -----~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~ 347 (626)
--..++.++..+..+..+.++.+.-+++.++..+.
T Consensus 1092 lnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1092 LNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 22456888899999999999999999988877654
No 251
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.44 E-value=1.1 Score=35.58 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=44.8
Q ss_pred HHHHHHHhc-CCCCHHHHHHHHHhHHHHHHhhCcc-chh--hhHHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 006898 164 LRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPA-HLK--TDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (626)
Q Consensus 164 l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~-~~~--~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (626)
++..|.+++ .+.++.+-..||.-+|.+++..+.- .+. -..-..+++++++++++||..|+.++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 444555555 3446777788888899999887541 111 124566788888899999998888887654
No 252
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=90.30 E-value=7.7 Score=32.63 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHhccccChHHhhh-cHHHHHhhhCCCCCchHHHHHHHHH
Q 006898 489 YLYRMTILRAISLLAPVMGSEITCS-RLLPVVINASKDRVPNIKFNVAKVL 538 (626)
Q Consensus 489 ~~vR~~a~~~l~~i~~~~~~~~~~~-~~l~~l~~~l~d~~~~vR~~a~~~l 538 (626)
......++.+++....-.+.+.+.+ .+++.+...+.++.- |..|+++|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 5556666666666665555443322 356666666655555 55555543
No 253
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=90.25 E-value=5.6 Score=33.26 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcCCc-h-h--HHHHHHHHHHHhhc
Q 006898 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQDDQ-D-S--VRLLAVEGCAALGK 231 (626)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d~~-~-~--vr~~a~~~l~~l~~ 231 (626)
...+....+.+-+.+.++.+...++..+..++.+.|.... ...++..+..++.+.. . . ||..++..+...+.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3456666777778889999999999999999998876322 2346667777665542 2 2 89999999988888
Q ss_pred ccCchh
Q 006898 232 LLEPQD 237 (626)
Q Consensus 232 ~~~~~~ 237 (626)
.++...
T Consensus 119 ~f~~~~ 124 (140)
T PF00790_consen 119 AFKSDP 124 (140)
T ss_dssp HTTTST
T ss_pred HHCCCC
Confidence 875533
No 254
>PF05536 Neurochondrin: Neurochondrin
Probab=90.17 E-value=28 Score=36.85 Aligned_cols=173 Identities=12% Similarity=0.005 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHHHHhhcChh----hHHHhHHHHHHHHhcCCcc-chhHHHhhHhHHhcCCCCh-H--HHHHHHHHHHHh
Q 006898 100 TCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWF-TARVSACGLFHIAYPSAPD-I--LKTELRSIYTQL 171 (626)
Q Consensus 100 ~~vR~~a~~~l~~i~~~~~~~----~~~~~l~~~l~~l~~~~~~-~~r~~a~~~l~~~~~~~~~-~--~~~~l~~~l~~l 171 (626)
...+..|+..|..++. +++ .-.-.-+|.+.+....... ..-..+.+++..++.+-.. . .....++.+...
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence 3445555555555554 221 1111234555555444433 4444566666666533211 1 112233344444
Q ss_pred cCCCCHHHHHHHHHhHHHHHHhhCccch------hhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--------hh
Q 006898 172 CQDDMPMVRRSAASNLGKFAATVEPAHL------KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--------QD 237 (626)
Q Consensus 172 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~------~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------~~ 237 (626)
..+ .+.....+...+..+....+.+.+ ...+++.+...........+-..+..|..+....+. ..
T Consensus 149 ~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 149 IPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred HHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 333 455667777777776665553211 123444444444444445555667777776665531 12
Q ss_pred hhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCC
Q 006898 238 CVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE 275 (626)
Q Consensus 238 ~~~~i~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~ 275 (626)
....+...+...+.+ ..+.-|..+....+.+....|.+
T Consensus 228 W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 234455556655544 46677888888888888877754
No 255
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.14 E-value=0.72 Score=28.80 Aligned_cols=29 Identities=24% Similarity=0.088 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898 436 KLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 436 ~l~p~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
..+|.+..++.+.+..||+.|+++++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35566666666666666666666666554
No 256
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.13 E-value=41 Score=38.75 Aligned_cols=218 Identities=16% Similarity=0.187 Sum_probs=118.3
Q ss_pred HhcCCCCHHHHHHHHHhHHHHHHhhCccc--hhhhHHHHHHHhhcCC---chhHHHHHHHHHHHhhcccCc---hhhhhh
Q 006898 170 QLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDD---QDSVRLLAVEGCAALGKLLEP---QDCVAH 241 (626)
Q Consensus 170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~l~~d~---~~~vr~~a~~~l~~l~~~~~~---~~~~~~ 241 (626)
..+..+..+||.....++-.+.+..|.-. -|+.+...+....... ...+-..+..++.-+...+-. ......
T Consensus 849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 34556667889998999999988877621 1555666655443322 223333455555444433211 222333
Q ss_pred hHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCC-------C------------------cccc----chHHHHHHhcCC
Q 006898 242 ILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-------E------------------PTRM----DLVPAYVRLLRD 291 (626)
Q Consensus 242 i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~-------~------------------~~~~----~l~~~l~~~l~d 291 (626)
++..+..++. ..+..+--+++..+-.+...+.. + ..++ .++..+.+++.|
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence 4444433332 22333444444444333322211 0 0011 255666777889
Q ss_pred ChHHHHHHHHHhHHHHHHhh----ChHH----HHHhhHHHHHHhc-c-CCCH---HH----HHHHHHHHHhhhhhhcHHH
Q 006898 292 NEAEVRIAAAGKVTKFCRIL----NPEL----AIQHILPCVKELS-S-DSSQ---HV----RSALASVIMGMAPLLGKDA 354 (626)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~----~~~~----~~~~l~~~l~~l~-~-d~~~---~v----r~~~~~~l~~l~~~~~~~~ 354 (626)
+.++||.+|++++-++...- +... .+..++|.+-..- + -++| .+ -+..+-.++.+++.|...+
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999998876643 3332 3445556553110 0 0111 11 2234555666666554321
Q ss_pred -----------HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898 355 -----------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (626)
Q Consensus 355 -----------~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~ 387 (626)
.-+.++..+.....|..+++..+++.++.++..
T Consensus 1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 123456666667779999999999999887653
No 257
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.13 E-value=2.4 Score=36.32 Aligned_cols=129 Identities=14% Similarity=0.077 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh---ChH-HHhhhhHHHHHhhhc-
Q 006898 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPE-WAMQHITPQVLEMIN- 485 (626)
Q Consensus 411 ~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~---~~~-~~~~~il~~l~~~l~- 485 (626)
..+|..+.-.+.++.+ ..++.+.+.+.+.+...+.+...+-...+..++..+.... +.. +..+.+++.+..+..
T Consensus 19 ~~~r~~a~v~l~k~l~-~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~ 97 (157)
T PF11701_consen 19 EEVRSHALVILSKLLD-AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR 97 (157)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence 3455555555555532 2223344555566666665555555555666665554322 111 123667778887777
Q ss_pred -CCChHHHHHHHHHHHHhccccC-hHHhhhcHHHHHhhhCC-CCCch-HHHHHHHHHHH
Q 006898 486 -NPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASK-DRVPN-IKFNVAKVLQS 540 (626)
Q Consensus 486 -~~~~~vR~~a~~~l~~i~~~~~-~~~~~~~~l~~l~~~l~-d~~~~-vR~~a~~~l~~ 540 (626)
.++..+...+++++..-+-.-. ...+.....+.|....+ ++++. +|..|+-+|.+
T Consensus 98 ~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6778888899998887654222 23456777888888885 44455 78777766654
No 258
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.10 E-value=21 Score=41.46 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=59.1
Q ss_pred HHHHHHHHhHHHHHHhhChHHHHHhhH---------HHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHH
Q 006898 295 EVRIAAAGKVTKFCRILNPELAIQHIL---------PCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPI 362 (626)
Q Consensus 295 ~vr~~a~~~l~~l~~~~~~~~~~~~l~---------~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~ 362 (626)
.+-..++.++..+....+.+.-....- ..+-.+.+++.+.+|.+..+.+..+......- .....+-|.
T Consensus 201 Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~ 280 (1312)
T KOG0803|consen 201 RVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPV 280 (1312)
T ss_pred HHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHH
Confidence 344556666666665555432111111 22335567888999999888877776544322 223456666
Q ss_pred HHHhhcCCCHHHHHHHHHhhHHHHhhhchhh------HHhhHHHHHHHHhc
Q 006898 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDL------LSQSLLPAIVELAE 407 (626)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~------~~~~i~~~l~~~~~ 407 (626)
+.....+.+ -|.....+++..+...+..++ ..+.++|.+.++.+
T Consensus 281 ~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 281 LLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred HHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 666666655 333333333332223333322 22457777777665
No 259
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=90.10 E-value=27 Score=36.66 Aligned_cols=220 Identities=14% Similarity=0.129 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchh--HHHHHHHHHHHhhcccCchh
Q 006898 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS--VRLLAVEGCAALGKLLEPQD 237 (626)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~--vr~~a~~~l~~l~~~~~~~~ 237 (626)
..+..+.++...+++++..+|.+++-.|+-.-..-..+ +++..+..++.|.+.+ |...|.-+|+.+.-..-.+.
T Consensus 449 e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e----~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~d 524 (878)
T KOG2005|consen 449 ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQRE----EVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNED 524 (878)
T ss_pred ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchH----HHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChH
Confidence 44566777777888888999998888887654432222 3333555567776554 55555545554432222233
Q ss_pred hhhhhHHHHHHhc--CCCCHHHHHHHH-----------------H--------------HHHHHHHHhCCCc--cccchH
Q 006898 238 CVAHILPVIVNFS--QDKSWRVRYMVA-----------------N--------------QLYELCEAVGPEP--TRMDLV 282 (626)
Q Consensus 238 ~~~~i~~~l~~~~--~d~~~~vR~~a~-----------------~--------------~l~~l~~~~~~~~--~~~~l~ 282 (626)
....++..+.... +-.+...|-.+. + .+-..+.+.|.-. ..+.
T Consensus 525 vts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~-- 602 (878)
T KOG2005|consen 525 VTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS-- 602 (878)
T ss_pred HHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech--
Confidence 3333333332211 112222332211 1 1111111112110 0001
Q ss_pred HHHHHhcCCChH--HH-HHHHHHh--HHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Q 006898 283 PAYVRLLRDNEA--EV-RIAAAGK--VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 357 (626)
Q Consensus 283 ~~l~~~l~d~~~--~v-r~~a~~~--l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 357 (626)
..+...+.+.+. +. ..-|+-. +-.+++.+|.+. .+..+.+++.-.++.+|+++--+++-++..-++ -
T Consensus 603 q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM----~lR~f~h~l~yge~~iRravPLal~llsvSNPq----~ 674 (878)
T KOG2005|consen 603 QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEM----VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ----V 674 (878)
T ss_pred hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHH----HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc----c
Confidence 122233333221 11 1112221 223334444443 355566666677888999887777777643222 1
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhh
Q 006898 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (626)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~ 393 (626)
.++..+.+...|.+.+|-.+++-+++-+........
T Consensus 675 ~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNAR 710 (878)
T KOG2005|consen 675 NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNAR 710 (878)
T ss_pred hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHH
Confidence 356677788889999999999888887765544433
No 260
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=25 Score=36.97 Aligned_cols=281 Identities=13% Similarity=0.073 Sum_probs=135.8
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 006898 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP 283 (626)
Q Consensus 204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~ 283 (626)
+..+-+.+..+++.++..|+-.++-....... -.+-.+..+...+.+++..+|..++-.+|.... |.. .+++..
T Consensus 417 L~qldkylys~~~~ikaGaLLgigi~~~gv~n--e~dpalALLsdyv~~~~s~~ri~aIlGLglaya--Gsq--~e~V~~ 490 (878)
T KOG2005|consen 417 LEQLDKYLYSDESYIKAGALLGIGISNSGVFN--ECDPALALLSDYLQSSSSIHRIGAILGLGLAYA--GSQ--REEVLE 490 (878)
T ss_pred HHHHHHHhhcCCchhhhccceeeeeecccccc--ccCHHHHHHHHhccCCCceeehHHhhhhHHhhc--CCc--hHHHHH
Confidence 34455555556667777666555543333322 245567777888888888899888877774432 221 234444
Q ss_pred HHHHhcCCChHH--HHHHHHHhHHHHHH-hhChHHHHHhhHHHHHHhcc--CCCHHHHHHHHHHHHhhhhhhcHHHHHHh
Q 006898 284 AYVRLLRDNEAE--VRIAAAGKVTKFCR-ILNPELAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKDATIEQ 358 (626)
Q Consensus 284 ~l~~~l~d~~~~--vr~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~l~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 358 (626)
.+...+.|.+.. |.--|.-+|+.+.- .+ .+.+...++..+.+-.+ -.+...|--+. .++.+ .+|+....+.
T Consensus 491 lL~Pi~~d~~~~~ev~~~aslsLG~IfvGsc-n~dvts~ilqtlmekse~El~d~~~RFL~L-GL~ll--flgkqe~~d~ 566 (878)
T KOG2005|consen 491 LLSPIMFDTKSPMEVVAFASLSLGMIFVGSC-NEDVTSSILQTLMEKSETELEDQWFRFLAL-GLALL--FLGKQESVDA 566 (878)
T ss_pred HHhHHhcCCCCchhHHHHHHhhcceeEEecC-ChHHHHHHHHHHHHhhhhhhhchHHHHHHH-HHHHH--HhcccchHHH
Confidence 566667766644 44333333433211 11 22334455554443221 12223332221 11111 1232221221
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHH-HHHHHHhcCCChH-HHHHHHHHHHHHHHhhChhhHHHH
Q 006898 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL-PAIVELAEDRHWR-VRLAIIEYIPLLASQLGVGFFDDK 436 (626)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~-~~l~~~~~~~~~~-~r~~~~~~l~~l~~~~~~~~~~~~ 436 (626)
.... ++.-...+|..+- .+-..+...|.-... .+- ..+..+..+.... -...-...++.-.-+.|.+.-.+-
T Consensus 567 ~~e~----~~~i~~~~~~~~~-~lv~~caYaGTGnvl-~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM 640 (878)
T KOG2005|consen 567 VVET----IKAIEGPIRKHES-ILVKSCAYAGTGNVL-KIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEM 640 (878)
T ss_pred HHHH----HHHhhhHHHHHHH-HHHHHhhccccCceE-EechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHH
Confidence 1111 1111122222222 222222222221100 010 1122222221110 000001111111112344444444
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (626)
Q Consensus 437 l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~ 504 (626)
.+-.+-+++.-.++.+|++.=-+++-++..-. +-.++..+.+..+|.+..+-.+++.++|-+..
T Consensus 641 ~lR~f~h~l~yge~~iRravPLal~llsvSNP----q~~vlDtLsk~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 641 VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNP----QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCC----cchHHHHHHHhccCcchHHHHHHHHHhccccC
Confidence 55667777888899999988888887764322 35689999999999999999999999998764
No 261
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=89.81 E-value=16 Score=37.84 Aligned_cols=131 Identities=10% Similarity=-0.092 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH----Hhh
Q 006898 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITC 512 (626)
Q Consensus 437 l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~----~~~ 512 (626)
....+.+...|-.+.+|..+...++..+..++..+.....+...-.++.|.+..+|......+..++.+.+.. .+.
T Consensus 276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3445566677777888888888888877776655444444555555677888888888888777776654422 234
Q ss_pred hcHHHHHhhhC-CCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCccccc
Q 006898 513 SRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 513 ~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
++....++..+ .|.+. ||..+.+.+..+....-- ...-+-.+. .+.-|-.++-|.
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~L---~~SeIlIvs-scmlDi~pd~r~ 411 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGVL---SSSEILIVS-SCMLDIIPDSRE 411 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhccc---chhHHHHHH-HHHhcCCCcchH
Confidence 44444444444 35555 999999998887654211 122222333 445565666555
No 262
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=89.65 E-value=32 Score=36.87 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=80.8
Q ss_pred HHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHhCh-------HH-HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc
Q 006898 435 DKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (626)
Q Consensus 435 ~~l~p~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~-------~~-~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~ 505 (626)
+.++...+.++ ...+..+-++++.+|..+....+. .. .++..+|.+.+++..++..+...++.++.++...
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 44555544444 445777888999998888754322 11 3577899999999999999999999999999876
Q ss_pred cChHH-hhhcHHHHHhhhCCCCCc------hHHHHHHHHHHHHHhh
Q 006898 506 MGSEI-TCSRLLPVVINASKDRVP------NIKFNVAKVLQSLIPI 544 (626)
Q Consensus 506 ~~~~~-~~~~~l~~l~~~l~d~~~------~vR~~a~~~l~~i~~~ 544 (626)
..... .-.+.+|-|...+-+..+ +.-..+|.+|.++...
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 65443 456788889988866555 5677888888888743
No 263
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=89.63 E-value=16 Score=33.19 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=77.0
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCC-CCHHHHHHH-HHHHHHHHHHhCCCccc
Q 006898 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTR 278 (626)
Q Consensus 201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~~vR~~a-~~~l~~l~~~~~~~~~~ 278 (626)
+.....+..+..++..+.|..|+..+........ ...++.+...+.+ .+|.+--.. ...++.+....
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 4445566667777777777777777765442222 1234455554433 456555444 34445443321
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh
Q 006898 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (626)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (626)
+...+.+....+++++-+|..++..+...... ...+.++..+...+.|++..||.++..+|..++..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 45666677777777777777766655444332 12245566666667777777777777777777654
No 264
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=89.54 E-value=5.7 Score=35.42 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=40.0
Q ss_pred HHHHHhhHHHHhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHH
Q 006898 376 LNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD 435 (626)
Q Consensus 376 ~~a~~~L~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~ 435 (626)
..++..++.+.+.+|.. .....++..+.++-++++...|..+-.+++...+.+|++.+.+
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~ 79 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS 79 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH
Confidence 33444444444444432 1224455666666677788899999999999999999987653
No 265
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.42 E-value=2.2 Score=34.05 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=37.1
Q ss_pred HHHHHHHHh-cCCchHHHHHHHHHHHHHHHHhChHH--H-hhhhHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 006898 437 LGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEW--A-MQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (626)
Q Consensus 437 l~p~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~--~-~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~ 503 (626)
++..+..++ .+.++.+-.-|+.=+|.++..++... . .-..-..++++++++|+.||..|+.|++.+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 444455555 22345555567777777777653321 1 1234455666677777777777777776553
No 266
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.22 E-value=39 Score=37.26 Aligned_cols=92 Identities=15% Similarity=0.132 Sum_probs=71.3
Q ss_pred hhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh--H---HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc-
Q 006898 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--E---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ- 547 (626)
Q Consensus 474 ~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~--~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~- 547 (626)
..|+..-..++.+++-.+|..++.++......+.. + ......+|.+...+.++++-+-..|++++..+....|.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 45556666678999999999999998876544332 1 23467788899999999999999999999999988776
Q ss_pred --chhhhcccchHHhhhccCC
Q 006898 548 --SVSTFSVSPFSFMLYLNVN 566 (626)
Q Consensus 548 --~~~~~~i~~~l~~~l~~d~ 566 (626)
+.+...++|.+. .+..|.
T Consensus 882 v~sR~l~dvlP~l~-~~~~~~ 901 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLK-HLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHHHH-HHHHHH
Confidence 466678888888 666553
No 267
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=88.59 E-value=28 Score=34.82 Aligned_cols=186 Identities=9% Similarity=0.034 Sum_probs=96.1
Q ss_pred HHHHHHHHHhHHHHHHhhChHHH--HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCC
Q 006898 294 AEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF 371 (626)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 371 (626)
..+-.+.+..+..+....+.... ...-+|.+...+-+....+|..+......+...++.+......+....+.-.++.
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 34555566666666665443311 1223455544444567788888777766666666654333222222221111111
Q ss_pred HHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHh
Q 006898 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWL 445 (626)
Q Consensus 372 ~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~-----~~~~~~l~p~l~~~l 445 (626)
.+. +.+.+.+.+++.+ ++. ..+.+.+..+...+|. -.+.+..+.+...++
T Consensus 228 -~~~--------------------~~~~~~L~~mi~~~~~~---~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cF 283 (372)
T PF12231_consen 228 -KLI--------------------QLYCERLKEMIKSKDEY---KLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCF 283 (372)
T ss_pred -cHH--------------------HHHHHHHHHHHhCcCCc---chHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHh
Confidence 222 3344444444444 211 1122223333322332 223456777888899
Q ss_pred cCCchHHHHHHHHHHHHHHHHhChHHH-hhhhHH----HHHhhhcC-CCh----HHHHHHHHHHHHhc
Q 006898 446 QDKVYSIRDAAANNLKRLAEEFGPEWA-MQHITP----QVLEMINN-PHY----LYRMTILRAISLLA 503 (626)
Q Consensus 446 ~d~~~~VR~~a~~~l~~l~~~~~~~~~-~~~il~----~l~~~l~~-~~~----~vR~~a~~~l~~i~ 503 (626)
+++++.+|..|..++..++.....+.. ....+. .+...++. ... .+|..++..++++.
T Consensus 284 n~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 284 NSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 999999999999999999986544321 122222 22222222 122 67788777777654
No 268
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=88.46 E-value=35 Score=35.68 Aligned_cols=150 Identities=8% Similarity=0.084 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCC--ChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh--------cCCchHHHHHHHHHHHHHHHHh
Q 006898 398 LLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL--------QDKVYSIRDAAANNLKRLAEEF 467 (626)
Q Consensus 398 i~~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l--------~d~~~~VR~~a~~~l~~l~~~~ 467 (626)
.+..+...+.++ +|..-...+-++++++.+++...-...++..+-.++ .|+..-|-..-.-.+|+.-..+
T Consensus 482 mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFL 561 (1053)
T COG5101 482 MIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFL 561 (1053)
T ss_pred HHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHH
Confidence 444555555444 566666777788888777665433333333333322 3333333333333334333333
Q ss_pred ChHH-HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH----------HhhhcHHHHHhhhCCCCCchHHHHHHH
Q 006898 468 GPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----------ITCSRLLPVVINASKDRVPNIKFNVAK 536 (626)
Q Consensus 468 ~~~~-~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~----------~~~~~~l~~l~~~l~d~~~~vR~~a~~ 536 (626)
...| +...++..+.+.+.....+++-.||..+-.++++|... .+...++..+.+...|-.+.-...--+
T Consensus 562 kahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYe 641 (1053)
T COG5101 562 KAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYE 641 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHH
Confidence 3232 34566777777777788899999999999999887654 344556666666667777777777777
Q ss_pred HHHHHHhhhcc
Q 006898 537 VLQSLIPIVDQ 547 (626)
Q Consensus 537 ~l~~i~~~~~~ 547 (626)
+++-+++..+.
T Consensus 642 Acg~vIse~p~ 652 (1053)
T COG5101 642 ACGMVISEVPK 652 (1053)
T ss_pred HHhHHHhccch
Confidence 77777766543
No 269
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=88.44 E-value=22 Score=33.37 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHH-HHHHhccccChHH
Q 006898 437 LGALCMQWLQDKV-----YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILR-AISLLAPVMGSEI 510 (626)
Q Consensus 437 l~p~l~~~l~d~~-----~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~-~l~~i~~~~~~~~ 510 (626)
.+|.++..+++++ ..++ .++..|+.+++..+... +..+...+....++.+...+. ++..+.+.+.++
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~-----La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~- 184 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPN-----LARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD- 184 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCcc-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-
Confidence 5667777777666 3344 56677888886654331 222333333332222222222 222333333322
Q ss_pred hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc-hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHH
Q 006898 511 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNY 589 (626)
Q Consensus 511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~ 589 (626)
+...++..+..++.+..+.+|..+.+.|..+....+-. .....++..+. ++++.+ ++.+|++.
T Consensus 185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispll-rlL~t~---------------~~~eAL~V 248 (262)
T PF14225_consen 185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLL-RLLQTD---------------LWMEALEV 248 (262)
T ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHH-HHhCCc---------------cHHHHHHH
Confidence 33567778899999999999999999999999887543 34445555555 565542 67788888
Q ss_pred HHHHhhcCCcc
Q 006898 590 CHRWWRKQSVP 600 (626)
Q Consensus 590 ~~~~~~~~~~~ 600 (626)
+..+...+..+
T Consensus 249 Ld~~v~~s~s~ 259 (262)
T PF14225_consen 249 LDEIVTRSGSP 259 (262)
T ss_pred HHHHHhhcccc
Confidence 87766555443
No 270
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=88.13 E-value=0.57 Score=29.46 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=11.8
Q ss_pred chHHHHHHhcCCChHHHHHHHHH
Q 006898 280 DLVPAYVRLLRDNEAEVRIAAAG 302 (626)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~ 302 (626)
.+...+...+.|+++.||.+|++
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHH
Confidence 34444455555555555555544
No 271
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=87.96 E-value=28 Score=33.97 Aligned_cols=157 Identities=12% Similarity=0.086 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHH-Hh---cCCchHHHHH-HHHHHHHHHHHhChH------HHhhhhHHHH
Q 006898 413 VRLAIIEYIPLLASQLG-VGFFDDKLGALCMQ-WL---QDKVYSIRDA-AANNLKRLAEEFGPE------WAMQHITPQV 480 (626)
Q Consensus 413 ~r~~~~~~l~~l~~~~~-~~~~~~~l~p~l~~-~l---~d~~~~VR~~-a~~~l~~l~~~~~~~------~~~~~il~~l 480 (626)
+|...+..+........ .+...+.++|.++. .+ .+..+..|.. ...+++.++..++.. ...+.++...
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44555555665555443 23333444444433 22 2345555554 446666677666552 1234455555
Q ss_pred HhhhcC---CChHHHHHHHHHHHHhccccChH------HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc----
Q 006898 481 LEMINN---PHYLYRMTILRAISLLAPVMGSE------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---- 547 (626)
Q Consensus 481 ~~~l~~---~~~~vR~~a~~~l~~i~~~~~~~------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---- 547 (626)
..+.++ .-|..|......+..+.+.+-.. .....++..+....+++..+|-..+++++..+......
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~ 202 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE 202 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 555544 35789999999999988865432 23456778888889999999999999999999888765
Q ss_pred ---chhhhcccchHHh--hhccCCCcc
Q 006898 548 ---SVSTFSVSPFSFM--LYLNVNNFN 569 (626)
Q Consensus 548 ---~~~~~~i~~~l~~--~l~~d~d~~ 569 (626)
..+....++.+.+ ..+.|++..
T Consensus 203 ~~~~F~~~y~~~il~~if~vltD~~Hk 229 (319)
T PF08767_consen 203 FANQFYQQYYLDILQDIFSVLTDSDHK 229 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcccH
Confidence 2334444444442 345666644
No 272
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=87.86 E-value=3.8 Score=36.28 Aligned_cols=72 Identities=28% Similarity=0.246 Sum_probs=54.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh
Q 006898 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (626)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~ 469 (626)
+..++.+.++..+++..+|..+++.+..+.+. |-. -....+|.+..+..|+++.+|..|...+..+.+.++.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 55677778888888888888888888887663 110 0135788888999999999999999999888877643
No 273
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.79 E-value=15 Score=30.73 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc----hhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCc
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP 235 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (626)
.+.+..+.+-+.+.++.+...++..|..+++++|... ....++..+..++.+ ..+.|+..++..+...+..+..
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 4455555566677778888888888888888776522 123355555555543 4557777777777776666554
No 274
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=87.66 E-value=5 Score=39.72 Aligned_cols=151 Identities=12% Similarity=0.042 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCch--HHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC-CChHHHHHHHHHHHHhccccCh---HH
Q 006898 437 LGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGS---EI 510 (626)
Q Consensus 437 l~p~l~~~l~d~~~--~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~-~~~~vR~~a~~~l~~i~~~~~~---~~ 510 (626)
-+..+++++..++. .||..+.+.|.++...-+.+.....-+..++.+.+. .-.......+..++++.++... ..
T Consensus 181 ~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~L 260 (832)
T KOG3678|consen 181 GLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRL 260 (832)
T ss_pred hHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44556677766654 579999999988876655443333334455554433 2344555666777777765331 12
Q ss_pred hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc----hhhhcccchHHhhhccCCCcccccccccCchhHHHHHH
Q 006898 511 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLA 586 (626)
Q Consensus 511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~a 586 (626)
+....+..++-+..-.+|.+-..++-+|+++.-+.+.. -....+-..|. .+....|.-.|. +|+.|
T Consensus 261 vaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF-~LA~skDel~R~---------~AClA 330 (832)
T KOG3678|consen 261 VAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLF-PLAFSKDELLRL---------HACLA 330 (832)
T ss_pred HhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhh-hhhcchHHHHHH---------HHHHH
Confidence 23345556666777778888889999999988776553 22334555555 666666778888 99999
Q ss_pred HHHHHHHhhcC
Q 006898 587 LNYCHRWWRKQ 597 (626)
Q Consensus 587 l~~~~~~~~~~ 597 (626)
+.++....+-.
T Consensus 331 V~vlat~KE~E 341 (832)
T KOG3678|consen 331 VAVLATNKEVE 341 (832)
T ss_pred Hhhhhhhhhhh
Confidence 88876554433
No 275
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=87.60 E-value=2.3 Score=32.41 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCc--hhHHHHHHHHHHHhh
Q 006898 174 DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQ--DSVRLLAVEGCAALG 230 (626)
Q Consensus 174 d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~--~~vr~~a~~~l~~l~ 230 (626)
+++|.+|..|++.++.++..++. +...+.+...+.+.+.|+. ...+-.|+..|..++
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 56799999999999999998876 4566778888888888764 356778888887764
No 276
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=87.31 E-value=15 Score=30.33 Aligned_cols=75 Identities=9% Similarity=0.061 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcCCch--hHHHHHHHHHHHhhcccC
Q 006898 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLLE 234 (626)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~ 234 (626)
..+.+..+.+-+.+.++.+...++..+..++.+.|.... ...++..+..++.+... .|+..++..+...+..+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 344555666667778888888888888888888776321 23355566666655432 377777777777766654
Q ss_pred c
Q 006898 235 P 235 (626)
Q Consensus 235 ~ 235 (626)
.
T Consensus 115 ~ 115 (133)
T smart00288 115 N 115 (133)
T ss_pred C
Confidence 3
No 277
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=87.27 E-value=0.99 Score=28.40 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=15.5
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHh
Q 006898 358 QLLPIFLSLLKDEFPDVRLNIISK 381 (626)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~ 381 (626)
.+...+...+.|+++.||.+|+..
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 455566666777777777766653
No 278
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=87.21 E-value=6.8 Score=32.39 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=59.4
Q ss_pred hhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHh----hhcHHHHHhhhCCCCCc--hHHHHHHHHHHHHHhhhcc
Q 006898 474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 474 ~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~----~~~~l~~l~~~l~d~~~--~vR~~a~~~l~~i~~~~~~ 547 (626)
...+..+.+-++++++.+...|+..+..+++.||..+. ...++..|..+++++.. .||..++..+..+...+++
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 44566677778889999999999999999999987643 34567777777766554 3999999999999888765
Q ss_pred chh
Q 006898 548 SVS 550 (626)
Q Consensus 548 ~~~ 550 (626)
++-
T Consensus 116 ~~~ 118 (133)
T smart00288 116 DPD 118 (133)
T ss_pred CCC
Confidence 433
No 279
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=87.15 E-value=37 Score=38.13 Aligned_cols=90 Identities=22% Similarity=0.284 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhh-cCCCHHHHHHHHHhhHHHHh----h-hchhhHHhhH---HHHH
Q 006898 332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQ----V-IGIDLLSQSL---LPAI 402 (626)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~L~~~~~----~-~~~~~~~~~i---~~~l 402 (626)
...+|.++...+..++...+..... +.++.++ .|+++.+|.....-+..-.. . .+.+.....+ .+.+
T Consensus 881 ~vd~r~~a~~~~v~~~~~~~~~~~l----~~~leil~~~~dp~~R~~i~~ml~~~~np~~~~~~~s~~~~~~~~~~~~~~ 956 (1180)
T KOG1932|consen 881 FVDVRICAEELNVDLGGVDGSPDDL----AYILEILENDPDPVIRHKILDMLSQSNNPVTKGGTESDLLKEALVERLWKL 956 (1180)
T ss_pred hhhhHHHhhhhhhhhcccCCChHHH----HHHhhhcccCcchHHHHHHHHHhhccCCceeeccccCccccHHHHHhhhhh
Confidence 3477888888777776554433323 3333333 58888899888777665211 1 1111111222 2333
Q ss_pred HHHhcCCChHHHHHHHHHHHHHH
Q 006898 403 VELAEDRHWRVRLAIIEYIPLLA 425 (626)
Q Consensus 403 ~~~~~~~~~~~r~~~~~~l~~l~ 425 (626)
.+.-..++|..|..+....-.+-
T Consensus 957 ~~~~k~~D~~~r~~v~d~~~~L~ 979 (1180)
T KOG1932|consen 957 KNLSKEPDICSRSSVLDVYIALF 979 (1180)
T ss_pred hccCCCCCeEeEeehhhhhhhee
Confidence 33335567777777655554443
No 280
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=86.69 E-value=7.5 Score=32.51 Aligned_cols=83 Identities=10% Similarity=0.127 Sum_probs=60.3
Q ss_pred hhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHh----hhcHHHHHhhhCCCCCc-h---HHHHHHHHHHHHHhh
Q 006898 473 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVP-N---IKFNVAKVLQSLIPI 544 (626)
Q Consensus 473 ~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~----~~~~l~~l~~~l~d~~~-~---vR~~a~~~l~~i~~~ 544 (626)
....+..|.+-+.++++.+...|+..+..+++.+|..+. ...++..+.+++.++.. . ||..+...+..+...
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 355667777788889999999999999999999887643 23466677776544332 2 899999999999888
Q ss_pred hccchhhhccc
Q 006898 545 VDQSVSTFSVS 555 (626)
Q Consensus 545 ~~~~~~~~~i~ 555 (626)
++..+....+.
T Consensus 120 f~~~~~~~~i~ 130 (140)
T PF00790_consen 120 FKSDPELSLIQ 130 (140)
T ss_dssp TTTSTTGHHHH
T ss_pred HCCCCCchHHH
Confidence 85543333333
No 281
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.63 E-value=17 Score=30.20 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=59.9
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 006898 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE 482 (626)
Q Consensus 407 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~ 482 (626)
.+++|..-...+..+.. +.-|+ ...+..+.+-++++++.|...|...|..+++..|..+. ...++..+.+
T Consensus 15 ~~~dw~~ileicD~In~--~~~~~----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~k 88 (139)
T cd03567 15 REEDWEAIQAFCEQINK--EPEGP----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIK 88 (139)
T ss_pred CCCCHHHHHHHHHHHHc--CCccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHH
Confidence 35667655555554432 11122 23444566677888888888888888888888877542 3566667777
Q ss_pred hhcC------CChHHHHHHHHHHHHhccccC
Q 006898 483 MINN------PHYLYRMTILRAISLLAPVMG 507 (626)
Q Consensus 483 ~l~~------~~~~vR~~a~~~l~~i~~~~~ 507 (626)
++.. .+..||..++..+......+.
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 89 LVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6642 356777777777776665443
No 282
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=85.97 E-value=50 Score=34.84 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=42.9
Q ss_pred cCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh----hcCCChHHHHHHHHHHHHhccccC
Q 006898 446 QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM----INNPHYLYRMTILRAISLLAPVMG 507 (626)
Q Consensus 446 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~----l~~~~~~vR~~a~~~l~~i~~~~~ 507 (626)
..+...+|-+.+..++.+.+..-++...+.+.|.+..+ +.|++|-+++.|+++++.+++..+
T Consensus 490 ~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 490 SEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred hCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 44444477777777777776665554556667766653 578888888888888888876543
No 283
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.56 E-value=58 Score=35.22 Aligned_cols=74 Identities=18% Similarity=0.024 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch-----hhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL-----KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~-----~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (626)
++.+..++..++..+..||..+++.+..+....|.+.. .+.-+..++.++.|.-..+|..++-.|..+.+..+.
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch
Confidence 44566777778888999999999999999988776321 223355677888999889999999988888766554
No 284
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=85.19 E-value=30 Score=32.01 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=44.5
Q ss_pred HhHHHHHHHHhcCC-ccchhHHHhhHhHHhcCCCChHHH-----HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHH
Q 006898 124 DWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (626)
Q Consensus 124 ~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~-----~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~ 192 (626)
-++.|++....+.. .+..|..+.+.|+++...-+++.. .+++|.++..++..+..-|..|...+.++..
T Consensus 94 lyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 94 LYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp GGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred hhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 35777775544443 356788999999999886665533 5678888888877777777777777766654
No 285
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=85.09 E-value=46 Score=34.62 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=75.1
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH----HHH
Q 006898 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATI 356 (626)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~ 356 (626)
....+.....|-++.+|..+..++......++.-.+.-..+.+.-..+.|.+..||....+.+..++..-+.. .+.
T Consensus 276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3455667778999999999999999988877665444445556666788999999999999998888655432 233
Q ss_pred HhHHHHHHHhhc-CCCHHHHHHHHHhhHHHHh
Q 006898 357 EQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQ 387 (626)
Q Consensus 357 ~~l~~~l~~~l~-d~~~~vr~~a~~~L~~~~~ 387 (626)
+.+...++.++. |.+- ||..+++.+..+..
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 344444444443 5555 99998888777643
No 286
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=84.78 E-value=44 Score=33.24 Aligned_cols=148 Identities=13% Similarity=0.075 Sum_probs=89.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHHHHhCh
Q 006898 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWL-----QDKVYSIRDAAANNLKRLAEEFGP 469 (626)
Q Consensus 397 ~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~--~~~~~~~l~p~l~~~l-----~d~~~~VR~~a~~~l~~l~~~~~~ 469 (626)
+++..+...+.+.+.....++.-+++.+++.-. .....+.++.-++.++ .|.+-.++.+++.+|..+.--...
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n 394 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN 394 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence 366777777778888888888888888876422 2233344444444443 456666778888898888654332
Q ss_pred H--HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---H-HhhhcHHHHHhhhCCCCCch-HHHHHHHHHHHHH
Q 006898 470 E--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---E-ITCSRLLPVVINASKDRVPN-IKFNVAKVLQSLI 542 (626)
Q Consensus 470 ~--~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~-~~~~~~l~~l~~~l~d~~~~-vR~~a~~~l~~i~ 542 (626)
. +....+...+...++-..+.+...-+..+..+...... + .-...+...|..+.+.++-. |--...+.+..++
T Consensus 395 ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lI 474 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLI 474 (604)
T ss_pred hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHH
Confidence 2 22344555666666666666666666665555432110 0 01245666777777777765 6666666666666
Q ss_pred hh
Q 006898 543 PI 544 (626)
Q Consensus 543 ~~ 544 (626)
.+
T Consensus 475 kH 476 (604)
T KOG4500|consen 475 KH 476 (604)
T ss_pred Hh
Confidence 55
No 287
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.71 E-value=1.3e+02 Score=38.75 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=94.3
Q ss_pred hcchHHHhhhhcCcchHHHHHHHHHHHHHHhhc----Ch------hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcC
Q 006898 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQM----RE------SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (626)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~----~~------~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~ 154 (626)
..+++.+-..++.++..++.....++..+.... +. -.+.+++++.+..++.++.|..|.+++..|..++.
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 445666666677888899999999988775543 21 12345677777888888888999999888888888
Q ss_pred CCChH----HHHHHHHHHHHhcCCCCHHH--------HHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhcCCchhH
Q 006898 155 SAPDI----LKTELRSIYTQLCQDDMPMV--------RRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQDSV 218 (626)
Q Consensus 155 ~~~~~----~~~~l~~~l~~l~~d~~~~v--------R~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~~~~v 218 (626)
..+.. ...+++..+...+.|...++ +......+..+......+ .....+...+..-+.+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 87742 33444444444444432222 222222222222111111 122334455555667788899
Q ss_pred HHHHHHHHHHhhcccCch
Q 006898 219 RLLAVEGCAALGKLLEPQ 236 (626)
Q Consensus 219 r~~a~~~l~~l~~~~~~~ 236 (626)
|..+.+.|..+++..+.+
T Consensus 1143 R~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKS 1160 (3550)
T ss_pred HHHHHHHHHHHHHHcCCc
Confidence 999999999998887653
No 288
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=84.25 E-value=8.5 Score=33.08 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc
Q 006898 174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (626)
Q Consensus 174 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (626)
|.--.+|++|.+++..+........-...+++.+...+.| +.++|..+...+..++...+.
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~ 98 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPE 98 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHH
Confidence 4457899999999999988776655567788888889999 888999999999988776654
No 289
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=84.02 E-value=18 Score=28.48 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH
Q 006898 293 EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA 354 (626)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~ 354 (626)
...-|..++.+++.+.+..+.. .+...++..+...++. +.+|..+++++..+...++.+.
T Consensus 28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHH
Confidence 3456677777777777733322 1122333333333332 3677777777777776666543
No 290
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.65 E-value=24 Score=29.19 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc---hhh-hHHHHHHHhhcC---CchhHHHHHHHHHHHhhcccC
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKT-DIMSIFEDLTQD---DQDSVRLLAVEGCAALGKLLE 234 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~-~ll~~l~~l~~d---~~~~vr~~a~~~l~~l~~~~~ 234 (626)
.+....+.+-+.+.++.++..|+..+..++.+.|... +.. +.+..+..++.+ .++.||..++..+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4445555566667777888888888888777776521 111 233334455543 355677777777776666555
Q ss_pred c
Q 006898 235 P 235 (626)
Q Consensus 235 ~ 235 (626)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 291
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=83.46 E-value=1e+02 Score=36.28 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhCh---H---HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--H-hhhcHHHHHhh
Q 006898 451 SIRDAAANNLKRLAEEFGP---E---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--I-TCSRLLPVVIN 521 (626)
Q Consensus 451 ~VR~~a~~~l~~l~~~~~~---~---~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--~-~~~~~l~~l~~ 521 (626)
.+-+.|...|..+...+.. . ......+..|++.++..+..+-.++|.+|.++.-..... . +.....+.|..
T Consensus 500 aIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrn 579 (2195)
T KOG2122|consen 500 AIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRN 579 (2195)
T ss_pred hhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHH
Confidence 3444455555554443321 1 123667888888899999999999999999987655432 2 34567788999
Q ss_pred hCCCCCchHHHHHHHHHHHHHhhh
Q 006898 522 ASKDRVPNIKFNVAKVLQSLIPIV 545 (626)
Q Consensus 522 ~l~d~~~~vR~~a~~~l~~i~~~~ 545 (626)
++..+...+-..++.+|.++..+-
T Consensus 580 LIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 580 LIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999887653
No 292
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=83.06 E-value=21 Score=28.14 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHHHHHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 409 RHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 409 ~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
.+...|..++..++.+.+ .+.+. +.++++-.+...+..+ ++|..|+++|..++..++.+
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 456677778888888777 33332 2344555555555544 89999999999999988775
No 293
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=82.84 E-value=10 Score=28.52 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHHHH
Q 006898 160 LKTELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCA 227 (626)
Q Consensus 160 ~~~~l~~~l~~l-~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~ 227 (626)
.+.+++..+..+ ....+..||...++++..+....+.. .-|..++..+.....|+++.+-..|.+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 456666666665 45567899999999999999877652 346678888888888887777777776654
No 294
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=82.24 E-value=56 Score=32.47 Aligned_cols=71 Identities=8% Similarity=0.076 Sum_probs=50.0
Q ss_pred hhhHHHHHhhhcCC-ChHHHHHHHHHHHHhccccChH-Hh--hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898 474 QHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSE-IT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 474 ~~il~~l~~~l~~~-~~~vR~~a~~~l~~i~~~~~~~-~~--~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 544 (626)
-+++..|..++... ++.+-..|+.=+|..+++.+.. .. .-..-..++.+++.++++||.+|+.++-.++..
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 34666677766554 4677788888888888776543 11 223445677889999999999999998877643
No 295
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=81.96 E-value=29 Score=29.03 Aligned_cols=75 Identities=12% Similarity=0.043 Sum_probs=55.0
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch----hhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCC
Q 006898 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE 275 (626)
Q Consensus 201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~ 275 (626)
.+.+..+.+-+.+.++.+...|+..|..+.+.+|.. .....++..+.+++. ..+..||..+...+...+..++.+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 456777777788889999999999999999988762 223345555555554 567788888888888877776644
No 296
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.59 E-value=29 Score=28.85 Aligned_cols=74 Identities=11% Similarity=-0.022 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcC------CchhHHHHHHHHHHHhhc
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD------DQDSVRLLAVEGCAALGK 231 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d------~~~~vr~~a~~~l~~l~~ 231 (626)
.+.+..+.+-+++.++.|...++..|..+++++|.... ...++..+.+++.+ .+..|+...+..+...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34455566667888888988899999999988886321 22345555555542 456888888888887776
Q ss_pred ccCc
Q 006898 232 LLEP 235 (626)
Q Consensus 232 ~~~~ 235 (626)
.++.
T Consensus 117 ~f~~ 120 (139)
T cd03567 117 ELPH 120 (139)
T ss_pred Hhcc
Confidence 6654
No 297
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=80.93 E-value=27 Score=27.92 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh
Q 006898 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (626)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 432 (626)
..++..+.+-+++++|++..-++..+..+.+..|..+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 4567777777788888888888888888888877654
No 298
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=80.82 E-value=48 Score=30.75 Aligned_cols=89 Identities=7% Similarity=0.083 Sum_probs=53.9
Q ss_pred hhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--------------------------------HhhhcHHHHHhhh
Q 006898 475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--------------------------------ITCSRLLPVVINA 522 (626)
Q Consensus 475 ~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--------------------------------~~~~~~l~~l~~~ 522 (626)
.+-..+...+.+.++.+|..++..+..++...+.. .-...++..|+..
T Consensus 43 ~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~ 122 (239)
T PF11935_consen 43 ELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDV 122 (239)
T ss_dssp HHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 34445555666667777777777777665322110 0113466677776
Q ss_pred CCCCC--chHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCC
Q 006898 523 SKDRV--PNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVN 566 (626)
Q Consensus 523 l~d~~--~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~ 566 (626)
+.++. +.+=..++.+|..++..- +.+.+.|+++|. .+..+.
T Consensus 123 l~~~~i~~~~~~a~insL~~Iak~R--P~~~~~Il~~ll-~~~~~~ 165 (239)
T PF11935_consen 123 LQSPHISSPLLTAIINSLSNIAKQR--PQFMSRILPALL-SFNPNL 165 (239)
T ss_dssp HC-TT--HHHHHHHHHHHHHHHHHS--GGGHHHHHHHHH-HHHHS-
T ss_pred HhhcccchHHHHHHHHHHHHHHHHh--hHHHHHHHHHHH-hcCccc
Confidence 66555 556667777777777652 356678999998 776554
No 299
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=79.78 E-value=1.3e+02 Score=35.33 Aligned_cols=212 Identities=10% Similarity=0.086 Sum_probs=107.1
Q ss_pred CHHHHHHHHHhHHHHHHhhCcc------chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhh---hhHH
Q 006898 176 MPMVRRSAASNLGKFAATVEPA------HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVA---HILP 244 (626)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~~------~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~---~i~~ 244 (626)
.-.+|+.+..+|.++.. |+. +-...++..+...+....+++.+.....|.++...... ..... .+..
T Consensus 364 ~~aLRrYa~MALTNLTF--GDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVta 441 (2195)
T KOG2122|consen 364 CNALRRYAGMALTNLTF--GDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTA 441 (2195)
T ss_pred HHHHHHHHHHHhhcccc--ccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHH
Confidence 34688888888887743 221 11123444444444444444444444555555443322 11111 1222
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChH----HHHHHHHHhHHHHHHhh---Ch
Q 006898 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEA----EVRIAAAGKVTKFCRIL---NP 313 (626)
Q Consensus 245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~---~~ 313 (626)
+..-.+.......-.+.+.+|-.++.+....- ..+..+.++..+|.-+.+ .+-+.+-..|..+...+ ..
T Consensus 442 La~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~ 521 (2195)
T KOG2122|consen 442 LAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCED 521 (2195)
T ss_pred HHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccch
Confidence 22223334443444555566666665543221 123455666666653321 12222222222222222 11
Q ss_pred H---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH--H-HHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898 314 E---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--T-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (626)
Q Consensus 314 ~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--~-~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~ 387 (626)
. .....++..|.+.+++.+-.+-..+|..|.+|+..-.++. . ..-.++.+.+++...+..+-..++.+|.++..
T Consensus 522 yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 522 YRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 1 1123455566666666666666666667777665443321 2 23467889999999888888888888888776
Q ss_pred hh
Q 006898 388 VI 389 (626)
Q Consensus 388 ~~ 389 (626)
.-
T Consensus 602 ~R 603 (2195)
T KOG2122|consen 602 FR 603 (2195)
T ss_pred CC
Confidence 53
No 300
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=79.65 E-value=31 Score=27.91 Aligned_cols=38 Identities=11% Similarity=-0.012 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhC
Q 006898 158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE 195 (626)
Q Consensus 158 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~ 195 (626)
.....++...|.+-+++.++.|+..+++.|..++...+
T Consensus 33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 34567889999999999999999999999999888644
No 301
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=79.59 E-value=96 Score=33.52 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=71.1
Q ss_pred cchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhChH-------H-HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh
Q 006898 279 MDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE-------L-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (626)
Q Consensus 279 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-------~-~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (626)
..++..++.++. ..++.+-++++.+|..+....+.. . ..+..+|.+.+++...+..|.++++.++..++.-
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 356666666654 344677788888887765533211 1 3466788899999989999999999899888764
Q ss_pred hc-HHHHHHhHHHHHHHhhcCCC------HHHHHHHHHhhHHHH
Q 006898 350 LG-KDATIEQLLPIFLSLLKDEF------PDVRLNIISKLDQVN 386 (626)
Q Consensus 350 ~~-~~~~~~~l~~~l~~~l~d~~------~~vr~~a~~~L~~~~ 386 (626)
.- ++....+.+|-+..+|-+.. .++-.+++.+|.++.
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 43 33344567788888886543 355555566666554
No 302
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=79.32 E-value=98 Score=33.45 Aligned_cols=259 Identities=14% Similarity=0.131 Sum_probs=130.8
Q ss_pred hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHH
Q 006898 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 318 (626)
Q Consensus 239 ~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 318 (626)
...++..+..+..|+-..|+..++..+..+...-+. ....++..+.+-+.|++..+...|...|..+...-+.- .-
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM--K~ 377 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM--KI 377 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc--ee
Confidence 445677788888999999999988888776654332 23467888888899988888877777777665422211 11
Q ss_pred hhHHHHHHhccCCCHHH--HHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc------CC--------------------
Q 006898 319 HILPCVKELSSDSSQHV--RSALASVIMGMAPLLGKDATIEQLLPIFLSLLK------DE-------------------- 370 (626)
Q Consensus 319 ~l~~~l~~l~~d~~~~v--r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~-------------------- 370 (626)
.++..+..++--++... ...++-.|..+.-....+.....++.+.+.+++ |.
T Consensus 378 Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k 457 (988)
T KOG2038|consen 378 VVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDK 457 (988)
T ss_pred ehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhcccccccch
Confidence 22333333333232222 222333333333222233334444444333331 10
Q ss_pred CHHHHHHHHH-----hhHHHH----hhh-----chhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHH
Q 006898 371 FPDVRLNIIS-----KLDQVN----QVI-----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 436 (626)
Q Consensus 371 ~~~vr~~a~~-----~L~~~~----~~~-----~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~ 436 (626)
..+|+..+-. -|+.+. ..+ +.+.+ ..-++.+..+....++.+-..++..+-++... ...+.++
T Consensus 458 ~e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~-~~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~--~~~vSDR 534 (988)
T KOG2038|consen 458 KEEVSTESPIELNSRLLSALLTGVNRAFPFAQTADDKL-EEQMKTLFKLTHSSNFNTSVQALMLLFQVSKK--NDYVSDR 534 (988)
T ss_pred hhhhcccchhhhhHHHHHHHHhcccccCCcccCchHHH-HHHhHHHHHHHhhcccchhHHHHHHHHHHHHh--hhhhHHH
Confidence 1122211111 111111 111 22233 44567777887788887777777766665432 2233344
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (626)
Q Consensus 437 l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~ 504 (626)
+...+..-|-|+-.---......|+.+...+..+. ....++..+++......+..-..++..+..+.+
T Consensus 535 yY~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llsel~K 605 (988)
T KOG2038|consen 535 YYRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDINIQRVRAFVKRLLQVAVQQQPPFICGILFLLSELLK 605 (988)
T ss_pred HHHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHHHHH
Confidence 44455555555532223334444555555443331 113344445554444555556666666665554
No 303
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.91 E-value=85 Score=32.51 Aligned_cols=147 Identities=14% Similarity=0.048 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCC---CHHHHHHHHHhHHHHHH--hhCccchhh--hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccC
Q 006898 162 TELRSIYTQLCQDD---MPMVRRSAASNLGKFAA--TVEPAHLKT--DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (626)
Q Consensus 162 ~~l~~~l~~l~~d~---~~~vR~~a~~~l~~l~~--~~~~~~~~~--~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 234 (626)
..++..+..+++++ +..+=..+.++++.... .++++.+.. .++......++ +......|..++..+.....
T Consensus 152 ~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~~~~ 229 (559)
T KOG2081|consen 152 SKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALLYCSL 229 (559)
T ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHHHhh
Confidence 44555555555433 24455566666666555 333332221 24444555555 33444555555544433322
Q ss_pred c-hh---hh------hhhHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccc---hHHHHHHhcCCChHHHHH
Q 006898 235 P-QD---CV------AHILPVI-VNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMD---LVPAYVRLLRDNEAEVRI 298 (626)
Q Consensus 235 ~-~~---~~------~~i~~~l-~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~---l~~~l~~~l~d~~~~vr~ 298 (626)
. +. +. ..+++.. .......+..-+.+.+..+..+++.+-... ..+. ++..++-.....+.+|-+
T Consensus 230 ~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie 309 (559)
T KOG2081|consen 230 DRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIE 309 (559)
T ss_pred hhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhh
Confidence 1 10 11 1122222 223344455566677777777766542111 1123 333334444566667777
Q ss_pred HHHHhHHHHHHh
Q 006898 299 AAAGKVTKFCRI 310 (626)
Q Consensus 299 ~a~~~l~~l~~~ 310 (626)
.....+-.+.+.
T Consensus 310 ~SF~fW~~lse~ 321 (559)
T KOG2081|consen 310 ASFNFWYSLSEE 321 (559)
T ss_pred hhHHhhhhhHHH
Confidence 666666665553
No 304
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.66 E-value=82 Score=32.19 Aligned_cols=137 Identities=12% Similarity=0.042 Sum_probs=69.9
Q ss_pred ChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC
Q 006898 429 GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507 (626)
Q Consensus 429 ~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~ 507 (626)
.++-|.+.+++.+... ....++|..-...+..++ |-. .+.-.+.|.+...+.....++.+....+....-...+
T Consensus 233 DpQ~fAEkLfk~~~~~--~er~E~klm~~~lisRli---G~HkL~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP 307 (616)
T KOG2229|consen 233 DPQGFAEKLFKQLLAC--KERFEVKLMLMKLISRLI---GIHKLFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVP 307 (616)
T ss_pred ChhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHh---hhhHHHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCC
Confidence 4555666666655544 223445555555555544 433 2345577888877766555555444444443333333
Q ss_pred hHHhhhcHHHHHhhhCCCCC-chHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCccccc
Q 006898 508 SEITCSRLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 508 ~~~~~~~~l~~l~~~l~d~~-~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
++...+.+...-.....|.+ ++|-.....++.++....+. ...+.++.-|. .+....+..|-.
T Consensus 308 ~d~iEpl~k~Ian~FVtD~~spEv~~vgiN~iREic~Rvpl-aMteeLLqDLa-~YK~sk~K~V~m 371 (616)
T KOG2229|consen 308 PDIIEPLLKTIANNFVTDENSPEVMAVGINAIREICERVPL-AMTEELLQDLA-SYKTSKKKVVMM 371 (616)
T ss_pred hHHhhHHHHHHHHHhcccCCCcceeehhhhHHHHHHhhcch-hhcHHHHHHHH-HHhHHHHHHHHH
Confidence 33333333334444555555 56666666667666654332 23344555555 555444444443
No 305
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=78.65 E-value=2.4 Score=26.09 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=18.1
Q ss_pred HHHHHhhhCCCCCchHHHHHHHHHHHHH
Q 006898 515 LLPVVINASKDRVPNIKFNVAKVLQSLI 542 (626)
Q Consensus 515 ~l~~l~~~l~d~~~~vR~~a~~~l~~i~ 542 (626)
.+|.|..++++++++++..++++|.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4556666666666677777777776653
No 306
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=77.92 E-value=35 Score=27.55 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=35.8
Q ss_pred HHhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhhhhcH-HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh
Q 006898 317 IQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (626)
Q Consensus 317 ~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~ 389 (626)
...++|.+.+.+. ....+.|.++...++.++....- +...+.++..+.+....... ...++.++..+++..
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3556676666665 55667777777777766654331 12222333322222222222 345555666665544
No 307
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=77.27 E-value=8.3 Score=33.14 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=45.4
Q ss_pred CCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 006898 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (626)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~ 272 (626)
|+--++|++|.+++..+.+.+........++..+...+.| +..+|..+...+..++...
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 4445899999999999988776654456678888888888 8899999888888887643
No 308
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=76.06 E-value=38 Score=27.01 Aligned_cols=37 Identities=14% Similarity=-0.011 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc
Q 006898 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP 196 (626)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~ 196 (626)
...++...+.+-+++.+|.+...++..+..++++.|+
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~ 70 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGE 70 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH
Confidence 3455667777777778888888888888888887765
No 309
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=76.01 E-value=2.8 Score=23.89 Aligned_cols=28 Identities=36% Similarity=0.369 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 006898 256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 291 (626)
Q Consensus 256 ~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 291 (626)
.||..++.+|+.+. .+..++.+.+.++|
T Consensus 2 ~vR~~aa~aLg~~~--------~~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLG--------DEEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcC--------CHhHHHHHHHHhcC
Confidence 46666666666553 23344555555544
No 310
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.59 E-value=10 Score=33.46 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=47.3
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhc---cc--
Q 006898 476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---QS-- 548 (626)
Q Consensus 476 il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~---~~-- 548 (626)
.+|.+.+.+.+-+...|..|-+.+..+....+.+ .+.++++..+...+...+.+|...++++|..+....| ..
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLV 194 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALV 194 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhh
Confidence 3444444444444444444444444444433322 2345566666666677777777777777766554432 22
Q ss_pred hhhhcccchHHhhhc
Q 006898 549 VSTFSVSPFSFMLYL 563 (626)
Q Consensus 549 ~~~~~i~~~l~~~l~ 563 (626)
++..+++|.+. .+.
T Consensus 195 PfYRQlLp~~n-~~k 208 (262)
T KOG3961|consen 195 PFYRQLLPVLN-TFK 208 (262)
T ss_pred hHHHHhhhhhh-hhc
Confidence 45567777777 554
No 311
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=74.08 E-value=5.5 Score=24.43 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=14.7
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHh
Q 006898 476 ITPQVLEMINNPHYLYRMTILRAISLL 502 (626)
Q Consensus 476 il~~l~~~l~~~~~~vR~~a~~~l~~i 502 (626)
.+|.+.+++.+++..++..++.++.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 445555555555555555555555554
No 312
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=73.53 E-value=11 Score=38.36 Aligned_cols=109 Identities=9% Similarity=0.076 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---HhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--
Q 006898 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAE---EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-- 509 (626)
Q Consensus 435 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~-- 509 (626)
..+...+++.+.+++..|.-.+...+...+- .++..+....++..+.+++...+...|....+.+.++.-.+..+
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 3466778888888766665555544444432 23445566788888988888778888888888888887766654
Q ss_pred --HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898 510 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (626)
Q Consensus 510 --~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 543 (626)
+....-+..++.+.+|++..|.....+.|.++.-
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 2233445567778899999999998888888653
No 313
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=73.43 E-value=71 Score=28.87 Aligned_cols=132 Identities=13% Similarity=0.116 Sum_probs=68.1
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCC-CCHHHHHH-HHHHHHHHHHHhCCCccccc
Q 006898 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYM-VANQLYELCEAVGPEPTRMD 280 (626)
Q Consensus 203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~~vR~~-a~~~l~~l~~~~~~~~~~~~ 280 (626)
.......+.+++.-+.|..|+..+...-.....+ -++.+...+.+ .+|.+--. +...+|.+... .+.
T Consensus 47 ~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~~ 115 (208)
T cd07064 47 LWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLAD------YPE 115 (208)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------Chh
Confidence 3344445566666677777777666543333222 13333333333 34443222 22223332211 123
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh
Q 006898 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (626)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (626)
..+.+.....+++.-+|..|+-+.-.+.+.... +.+...+..++.|++.-|+.++..+|..+++.
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~----~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEKTDT----DLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHccCH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 345666666777766666665544444443222 33445556667777777777777777777654
No 314
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=73.13 E-value=48 Score=26.77 Aligned_cols=36 Identities=6% Similarity=0.032 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhhcccC
Q 006898 199 LKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLE 234 (626)
Q Consensus 199 ~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~ 234 (626)
+...++|.+.+.+. ...++.|.++.-.++.++...+
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~ 39 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP 39 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC
Confidence 34556666666666 5556666666666666665544
No 315
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=72.77 E-value=75 Score=28.91 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=50.7
Q ss_pred HHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-----ccCCchHHHHHHHHHHhccccccCCc
Q 006898 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-----NNDDDDEVLLAMAEELGVFIPYVGGV 81 (626)
Q Consensus 13 ~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-----~~~~~~~vr~~~~~~l~~~~~~~~~~ 81 (626)
.+...|.|.|...|..|++.+...........+..+++.+-+. +..+.|.++...+..++.+...+..+
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~ 77 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSE 77 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcCh
Confidence 4667899999999999999999876544322133455544444 56788999999999999887766544
No 316
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=71.40 E-value=15 Score=37.36 Aligned_cols=108 Identities=12% Similarity=0.194 Sum_probs=76.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHH---hhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH--
Q 006898 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLAS---QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-- 470 (626)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~---~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-- 470 (626)
..+...+.+++.+++.++.......+....- .++..+....++..+..++..++..+|..+.+.+..+.-...+.
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 3466677777777766655555444444322 23555666788999999998888899999999988776443332
Q ss_pred --HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 006898 471 --WAMQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (626)
Q Consensus 471 --~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~ 503 (626)
.....=...+.+..+||.|.+....++.+.++.
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 122333567788899999999999999999884
No 317
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.32 E-value=1.3e+02 Score=31.10 Aligned_cols=245 Identities=13% Similarity=0.042 Sum_probs=112.3
Q ss_pred HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHH--HhhHHHHhhhchhhHH
Q 006898 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII--SKLDQVNQVIGIDLLS 395 (626)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~--~~L~~~~~~~~~~~~~ 395 (626)
+..+..+.+.+++++...+.+++--++.....-..+ .++..+..+..+.+..+...++ -+|+.+.-..-...+.
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~e----evl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~t 524 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAE----EVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLT 524 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHH----HHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHH
Confidence 344566677788888888887765555443322233 3444555555555554444333 3444432222223334
Q ss_pred hhHHHHHHHHhc--CCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHh
Q 006898 396 QSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM 473 (626)
Q Consensus 396 ~~i~~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~ 473 (626)
..++..+.+-.+ ......|..++. +..+. .|.....+.....+... ...+ ....+.|-..|+..|...
T Consensus 525 s~ilqtf~Er~~~e~~tqw~RFlaLg-La~Lf--~g~~d~~d~v~eti~aI----eg~l-s~~~eiLv~~c~Y~GTGd-- 594 (881)
T COG5110 525 SLILQTFVERGKIESETQWFRFLALG-LASLF--YGRKDQVDDVEETIMAI----EGAL-SKHEEILVKGCQYVGTGD-- 594 (881)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHH-HHHHH--ccccchhHHHHHHHHHh----cchh-hhhHHHHHhhceecccCc--
Confidence 556666665433 233445555443 22222 12221111111111111 0000 112223333333333210
Q ss_pred hhhHHHHHhhhcCC------ChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 474 QHITPQVLEMINNP------HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 474 ~~il~~l~~~l~~~------~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
..++..++.....+ +...-.....+++...-.+|.+.-.+.++..+-..+.-.++.+|...--+++-+..
T Consensus 595 vl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~---- 670 (881)
T COG5110 595 VLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSP---- 670 (881)
T ss_pred HHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccC----
Confidence 11222232221111 11222222223332222334443334555566666666777788666555554432
Q ss_pred chhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHH
Q 006898 548 SVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYC 590 (626)
Q Consensus 548 ~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~ 590 (626)
+..+..++..|. +..+|.|.+|-. ++..|++-+
T Consensus 671 SnPQm~vfDtL~-r~shd~dl~v~~---------ntIfamGLi 703 (881)
T COG5110 671 SNPQMNVFDTLE-RSSHDGDLNVII---------NTIFAMGLI 703 (881)
T ss_pred CCcchHHHHHHH-HhccccchhHHH---------HHHHHhhcc
Confidence 333457788888 888888888877 555555544
No 318
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=70.86 E-value=59 Score=26.84 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=48.7
Q ss_pred cCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH----HhhHHHHHHH
Q 006898 329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVE 404 (626)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~----~~~i~~~l~~ 404 (626)
.+++|..-..++..+..-. ......+..+.+-++..++.++..|+..|..+.+.-|.... ....+..+.+
T Consensus 14 ~~~D~~~il~icd~I~~~~------~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 14 EEPDWALNLELCDLINLKP------NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred CCccHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 4466666555555544321 11223455566666667777777777777766665554321 1122223444
Q ss_pred HhcC---CChHHHHHHHHHHHHHHHhhC
Q 006898 405 LAED---RHWRVRLAIIEYIPLLASQLG 429 (626)
Q Consensus 405 ~~~~---~~~~~r~~~~~~l~~l~~~~~ 429 (626)
++.. .+..+|..+++.+..+...++
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4432 244555555555555555443
No 319
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=70.51 E-value=78 Score=28.12 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=38.8
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh
Q 006898 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (626)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (626)
+.+.....+++.-+|+.+...+...... +...+.++..+..+..|++..||.++..+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 5566666677766666666555544432 112244566666666667777777777777666654
No 320
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=69.78 E-value=27 Score=29.15 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=35.7
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHH
Q 006898 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALA 340 (626)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~ 340 (626)
+.+-..+..++.+.+++|+..|++++-.+-. +. ....-..+.++++|. ..|....
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~~-l~pY~d~L~~Lldd~--~frdeL~ 70 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD----PY-LTPYKDNLENLLDDK--TFRDELT 70 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HH-HHhHHHHHHHHcCcc--hHHHHHH
Confidence 3566778888999999999999999877643 11 122234566667664 3444443
No 321
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=69.77 E-value=1.2e+02 Score=29.86 Aligned_cols=128 Identities=9% Similarity=0.093 Sum_probs=84.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhHH---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH--
Q 006898 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-- 470 (626)
Q Consensus 399 ~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~---~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-- 470 (626)
+..+.+..+.++..+-..+...+..+..... .+++. +.+...+..++..++.-.|+.+.+.||.+...-...
T Consensus 166 f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~v 245 (335)
T PF08569_consen 166 FWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNV 245 (335)
T ss_dssp GGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred HHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHH
Confidence 3345566777888888888888777665321 22222 446667888999999999999999999997532111
Q ss_pred ----HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC-hHHh-------hhcHHHHHhhhCCCC
Q 006898 471 ----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEIT-------CSRLLPVVINASKDR 526 (626)
Q Consensus 471 ----~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~-~~~~-------~~~~l~~l~~~l~d~ 526 (626)
.....-+..++.++.|++..+|..|...+.-++..-. +..+ .+.++.++..+..|+
T Consensus 246 m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 246 MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 1124567788889999999999999999998875422 1112 245777777777776
No 322
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=69.75 E-value=53 Score=25.88 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhChH
Q 006898 451 SIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 451 ~VR~~a~~~l~~l~~~~~~~ 470 (626)
++|..|.++|..+...++++
T Consensus 69 eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 69 ELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred hHHHHHHHHHHHHHHhCCHH
Confidence 35555555555555555443
No 323
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=69.46 E-value=82 Score=27.97 Aligned_cols=63 Identities=21% Similarity=0.219 Sum_probs=30.4
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006898 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (626)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 270 (626)
+.+.....+++.-+|..+...+...... +...+.++..+.....|++..||.+.+.+|..++.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~ 170 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGK 170 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555444444333222 12234445555555555555555555555555443
No 324
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=69.09 E-value=1.7e+02 Score=31.43 Aligned_cols=218 Identities=18% Similarity=0.181 Sum_probs=101.4
Q ss_pred hhhcccccc-ccCCchHHHHHHHHHHhccccccCCc---chhh--------cchHHHhhhh--cCcchHHHHHHHHHHHH
Q 006898 47 KELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV---EHAH--------VLLPPLETLC--TVEETCVRDKAVESLCR 112 (626)
Q Consensus 47 ~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~---~~~~--------~l~~~l~~l~--~~~~~~vR~~a~~~l~~ 112 (626)
+-++.++.. ..+.+..+|-.++..+..+...++-. .+.+ ..+..+++-+ .+.++.+-..++.-++
T Consensus 245 ~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a- 323 (993)
T COG5234 245 EVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA- 323 (993)
T ss_pred HHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-
Confidence 344555555 34456678888888777766655521 1111 1222333322 1234443333332222
Q ss_pred HHhhcChhhHHH-hHHHHHHHHhcCC--------ccchhHHHhhHhHHhcCC----CChHHHHHHHHHHHH-hcCCCCHH
Q 006898 113 IGSQMRESDLVD-WYIPLVKRLAAGE--------WFTARVSACGLFHIAYPS----APDILKTELRSIYTQ-LCQDDMPM 178 (626)
Q Consensus 113 i~~~~~~~~~~~-~l~~~l~~l~~~~--------~~~~r~~a~~~l~~~~~~----~~~~~~~~l~~~l~~-l~~d~~~~ 178 (626)
+++..+- ++.+ .+.|++...++-+ -..+|.+++-++=.++.. ..+..+..+.-.+.+ .+-|++-.
T Consensus 324 la~~~~i-d~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~ 402 (993)
T COG5234 324 LAGAGLI-DYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELN 402 (993)
T ss_pred Hhhcccc-chhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhh
Confidence 3332222 2222 2455554443321 123455555444333332 223344555566665 67899999
Q ss_pred HHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-hhhhhhhHHHHHHhcCCCCHHH
Q 006898 179 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRV 257 (626)
Q Consensus 179 vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d~~~~v 257 (626)
+|+++..++-++.....+......++..+ +..+ .+. -..+-+.+.....+.++ ....+.+-.++.+.+.+-++.+
T Consensus 403 vRr~a~Aal~E~iGR~~s~a~g~~lIslI-N~~s--v~r-~s~csg~~~r~~~~~~k~~~CedVF~diLl~Nl~H~~~~~ 478 (993)
T COG5234 403 VRRAATAALFEVIGRHASIADGLSLISLI-NYVS--VTR-ISNCSGDLCRKVAHFPKFRSCEDVFQDILLTNLQHWDVKV 478 (993)
T ss_pred hhhHHHHHHHHHhccCCCcccchhhhhhc-ccee--cch-hhhcchHHHHHhcCccccchHHHHHHHHHHhhhhccchhh
Confidence 99999988877665522222222233222 1100 000 11222333333333332 1122222233445556667778
Q ss_pred HHHHHHHHHHHHH
Q 006898 258 RYMVANQLYELCE 270 (626)
Q Consensus 258 R~~a~~~l~~l~~ 270 (626)
+.....++..+.+
T Consensus 479 k~~~~y~l~~liK 491 (993)
T COG5234 479 KQLSAYSLRQLIK 491 (993)
T ss_pred hhhccccHHHHhc
Confidence 8888788777743
No 325
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=68.74 E-value=61 Score=26.22 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 435 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
..++..+.+-|+++.+-|+..+.++|..++...++.
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD 72 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH
Confidence 357888888899999999999999999999875544
No 326
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.51 E-value=1.4e+02 Score=30.33 Aligned_cols=133 Identities=24% Similarity=0.298 Sum_probs=69.0
Q ss_pred HHHHHHHhhhhh----hcHHHH--HHhHHHHHHHhhcC--CCHHHHHHHHHhhHHHHhhhchhhH--HhhHHHHHHHHhc
Q 006898 338 ALASVIMGMAPL----LGKDAT--IEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE 407 (626)
Q Consensus 338 ~~~~~l~~l~~~----~~~~~~--~~~l~~~l~~~l~d--~~~~vr~~a~~~L~~~~~~~~~~~~--~~~i~~~l~~~~~ 407 (626)
-.+++++.++.. ++-... ...++|.+...|.. ...+.....+-.++.+.....-..+ ...+++.+.++++
T Consensus 521 F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~ 600 (791)
T KOG1222|consen 521 FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQ 600 (791)
T ss_pred HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHH
Confidence 455666666542 122222 23578888777752 2234555555566655433222222 1347777777764
Q ss_pred C---CChHHHHHHHHHHHHHHH-hhChhhH-H-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH
Q 006898 408 D---RHWRVRLAIIEYIPLLAS-QLGVGFF-D-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 472 (626)
Q Consensus 408 ~---~~~~~r~~~~~~l~~l~~-~~~~~~~-~-~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~ 472 (626)
. .+..+- ..+-.+.++.. ....... . ...-..+..+++|.+.++|..+-.+|.-+... .++|.
T Consensus 601 a~QeDDEfV~-QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~-d~EWA 669 (791)
T KOG1222|consen 601 ACQEDDEFVV-QIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH-DKEWA 669 (791)
T ss_pred hhcccchHHH-HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh-hHHHH
Confidence 2 333322 22223333322 2222221 1 22344577889999999999888887766643 44443
No 327
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=66.94 E-value=77 Score=29.48 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-hChHH---------Hhhhh
Q 006898 411 WRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE-FGPEW---------AMQHI 476 (626)
Q Consensus 411 ~~~r~~~~~~l~~l~~~~~~~~~----~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~-~~~~~---------~~~~i 476 (626)
...|.+.+..++.+.+.-.++.+ ..+++|.+++.++..+.--+..|.-.+.++... .|-.+ ....+
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~v 189 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMV 189 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHH
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHH
Confidence 45566666666666654333322 134677777776666666666666666555432 11110 11222
Q ss_pred HHHHH-hhhcCCChHHHHHHHHHHHHhcccc
Q 006898 477 TPQVL-EMINNPHYLYRMTILRAISLLAPVM 506 (626)
Q Consensus 477 l~~l~-~~l~~~~~~vR~~a~~~l~~i~~~~ 506 (626)
+..+. .+.++++++.-...++|...+.+.-
T Consensus 190 L~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 190 LNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 22222 2345556655556666666555433
No 328
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.57 E-value=1.3e+02 Score=29.13 Aligned_cols=143 Identities=11% Similarity=0.051 Sum_probs=82.4
Q ss_pred HHHHHHHhcC-CchHHHHHHHHHHHHHHHHhChHHHh-----hhhHHHHHhhh--cCCChHHHHHHHHHHHHhccccCh-
Q 006898 438 GALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAM-----QHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGS- 508 (626)
Q Consensus 438 ~p~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~-----~~il~~l~~~l--~~~~~~vR~~a~~~l~~i~~~~~~- 508 (626)
+..++.++.| .+..+|..+-.++..+-..-|.+..+ ...+|.+..++ ...++.+-+.++-++..++-..+.
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 4567788888 56678877777777776666655333 33456665543 235778888888888877644332
Q ss_pred --HHhhhcHHHHHhhhC-CCCC-chHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCcccccccccCchhHH
Q 006898 509 --EITCSRLLPVVINAS-KDRV-PNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLF 582 (626)
Q Consensus 509 --~~~~~~~l~~l~~~l-~d~~-~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~ 582 (626)
..+....-....+.+ ..|. ..|+.++|+.+.++...-.+. .+...-...|. +......+.++. .
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li-~~A~~~h~tce~---------~ 434 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLI-RTAKANHETCEA---------A 434 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHH-HHHHhcCccHHH---------H
Confidence 122222222333333 2333 468999999999998664332 12222222333 333444566667 6
Q ss_pred HHHHHHHH
Q 006898 583 SCLALNYC 590 (626)
Q Consensus 583 a~~al~~~ 590 (626)
|..||.-+
T Consensus 435 akaALRDL 442 (461)
T KOG4199|consen 435 AKAALRDL 442 (461)
T ss_pred HHHHHHhc
Confidence 77777654
No 329
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=66.57 E-value=74 Score=27.13 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHH--hChHHHhhhhHHHHHhhhcCC--ChHHHHHHHHHHHHhccccCh---HHhhhcHHHHHhhhCC
Q 006898 452 IRDAAANNLKRLAEE--FGPEWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASK 524 (626)
Q Consensus 452 VR~~a~~~l~~l~~~--~~~~~~~~~il~~l~~~l~~~--~~~vR~~a~~~l~~i~~~~~~---~~~~~~~l~~l~~~l~ 524 (626)
.-..+..++..+.+. ++-+.....++..+....+.+ +..+-+.++..+..++...+. ....+--++.|...++
T Consensus 33 ~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq 112 (160)
T PF11841_consen 33 ILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQ 112 (160)
T ss_pred HHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHH
Confidence 333444555555443 122223455566666655443 577888888888888764332 1223456778888888
Q ss_pred CCCchHHHHHHHHHHHHHhhhccc
Q 006898 525 DRVPNIKFNVAKVLQSLIPIVDQS 548 (626)
Q Consensus 525 d~~~~vR~~a~~~l~~i~~~~~~~ 548 (626)
+++++++.+|...+..+..+.+++
T Consensus 113 ~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 113 VSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred cCCHHHHHHHHHHHHHHHhcCChH
Confidence 899999999999999888776543
No 330
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=65.18 E-value=2.5e+02 Score=32.04 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898 489 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540 (626)
Q Consensus 489 ~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 540 (626)
-++|.++..++...+...+.......+++.+ -.|++|.+|....+.+..
T Consensus 882 vd~r~~a~~~~v~~~~~~~~~~~l~~~leil---~~~~dp~~R~~i~~ml~~ 930 (1180)
T KOG1932|consen 882 VDVRICAEELNVDLGGVDGSPDDLAYILEIL---ENDPDPVIRHKILDMLSQ 930 (1180)
T ss_pred hhhHHHhhhhhhhhcccCCChHHHHHHhhhc---ccCcchHHHHHHHHHhhc
Confidence 4578888888777765444333333333332 368888999888888776
No 331
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=65.11 E-value=82 Score=26.34 Aligned_cols=74 Identities=8% Similarity=-0.033 Sum_probs=45.1
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHH-HHHhhcC---CchhHHHHHHHHHHHhhccc
Q 006898 163 ELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSI-FEDLTQD---DQDSVRLLAVEGCAALGKLL 233 (626)
Q Consensus 163 ~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~-l~~l~~d---~~~~vr~~a~~~l~~l~~~~ 233 (626)
+.+..+.+-+. +.++.|...++..+..++++.|.... ...++.. +.+++.+ ....|+...+..+...+..+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 34444444444 46788888888888888888876322 1234443 5555543 23467777777777777666
Q ss_pred Cch
Q 006898 234 EPQ 236 (626)
Q Consensus 234 ~~~ 236 (626)
+.+
T Consensus 118 ~~~ 120 (141)
T cd03565 118 RGS 120 (141)
T ss_pred CCC
Confidence 543
No 332
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.88 E-value=1.7e+02 Score=29.85 Aligned_cols=93 Identities=10% Similarity=0.076 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccC-hHH-h-hhcHHHHHhhhCC
Q 006898 452 IRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMG-SEI-T-CSRLLPVVINASK 524 (626)
Q Consensus 452 VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~-~~~-~-~~~~l~~l~~~l~ 524 (626)
+....+-++|+++....-.. ....+++.+.++++. .+...-...+..+.++..+-. .+. + ....-.++..++.
T Consensus 565 LvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMH 644 (791)
T KOG1222|consen 565 LVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMH 644 (791)
T ss_pred hhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHh
Confidence 44444455555544332221 235688888887754 344455556666666665422 121 1 1235567889999
Q ss_pred CCCchHHHHHHHHHHHHHhh
Q 006898 525 DRVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 525 d~~~~vR~~a~~~l~~i~~~ 544 (626)
|.+.++|...-.+|.-|+..
T Consensus 645 DkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 645 DKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 99999999888887766554
No 333
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=63.78 E-value=1.1e+02 Score=27.54 Aligned_cols=156 Identities=15% Similarity=0.039 Sum_probs=87.6
Q ss_pred CCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcC-
Q 006898 58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG- 136 (626)
Q Consensus 58 ~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~- 136 (626)
=+.|.+|..+-..+...-. + ..+....+...+..++.-+.|-.|+..+..-.+...+.. ++.+...+.+
T Consensus 23 v~~P~~R~lak~~~~~~~~----~-~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~ 92 (208)
T cd07064 23 IKTPERRALSKPFLKESKL----P-DKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTK 92 (208)
T ss_pred CChHHHHHHHHHHHHHcCC----C-cHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCC
Confidence 3566666555544433211 0 122344455566666666677777776666544444432 2223333322
Q ss_pred -CccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCc
Q 006898 137 -EWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ 215 (626)
Q Consensus 137 -~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~ 215 (626)
.|+.+=..+..+++.+... .+...+.+.....+++..+|+.++-+.-.+.+. .-.+.+...+..+++|++
T Consensus 93 ~~Wd~vD~~~~~i~g~~~~~-----~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~----~~~~~l~~~~~~~~~d~e 163 (208)
T cd07064 93 SWWDTVDSLAKVVGGILLAD-----YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK----TDTDLLFEIILANLGSKE 163 (208)
T ss_pred chHHHHHHHHHHHhHHHHhC-----ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHhCCChH
Confidence 2333333444444443322 123456777788888888888887654443332 223556677778888998
Q ss_pred hhHHHHHHHHHHHhhcc
Q 006898 216 DSVRLLAVEGCAALGKL 232 (626)
Q Consensus 216 ~~vr~~a~~~l~~l~~~ 232 (626)
.-|+++.--+|..+++.
T Consensus 164 ~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 164 FFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 88998877778777655
No 334
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=63.47 E-value=72 Score=25.14 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=34.7
Q ss_pred HHHHHHHHhHHHHHHhhChHH--HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH
Q 006898 295 EVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA 354 (626)
Q Consensus 295 ~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~ 354 (626)
.-|..++.+++.+.+..|... ....++..+...++ .+..|..+++++..+...++.+.
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 457777788877777655431 22333334444443 44577888888887777766543
No 335
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=62.95 E-value=1.6e+02 Score=28.83 Aligned_cols=74 Identities=15% Similarity=0.257 Sum_probs=50.4
Q ss_pred HHhHHHHHHHhhcC---CCHHHHHHHHHhhHHHHhhh-------chhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 006898 356 IEQLLPIFLSLLKD---EFPDVRLNIISKLDQVNQVI-------GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (626)
Q Consensus 356 ~~~l~~~l~~~l~d---~~~~vr~~a~~~L~~~~~~~-------~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~ 425 (626)
.+.+......+.++ +-|+.|..-..-+..+.+.. +++.+ +.++..+....++++..+-..++.++..+.
T Consensus 115 ~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f-~~~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 115 LEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQF-KLVIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp HHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 34444455555543 34888888887777766542 33333 567777888888999999999999888887
Q ss_pred HhhCh
Q 006898 426 SQLGV 430 (626)
Q Consensus 426 ~~~~~ 430 (626)
+....
T Consensus 194 ~~~~~ 198 (319)
T PF08767_consen 194 NNVSK 198 (319)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76544
No 336
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=62.91 E-value=90 Score=26.08 Aligned_cols=75 Identities=8% Similarity=0.126 Sum_probs=48.9
Q ss_pred CCccchhHHHhhHhHHhcCCCChHHH-----HHHHHH-HHHhcCC---CCHHHHHHHHHhHHHHHHhhCccchhhhHHHH
Q 006898 136 GEWFTARVSACGLFHIAYPSAPDILK-----TELRSI-YTQLCQD---DMPMVRRSAASNLGKFAATVEPAHLKTDIMSI 206 (626)
Q Consensus 136 ~~~~~~r~~a~~~l~~~~~~~~~~~~-----~~l~~~-l~~l~~d---~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~ 206 (626)
+.++.+...|..++..+..+++.... .+.+.. +..++.. ....||..++..+..++..++.+.-...+...
T Consensus 50 ~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 129 (141)
T cd03565 50 NKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEV 129 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHH
Confidence 34555666677888888888876433 455554 6666653 34689999999999999988764333444444
Q ss_pred HHHh
Q 006898 207 FEDL 210 (626)
Q Consensus 207 l~~l 210 (626)
+..+
T Consensus 130 y~~L 133 (141)
T cd03565 130 YEEL 133 (141)
T ss_pred HHHH
Confidence 3333
No 337
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=62.56 E-value=1.5e+02 Score=28.44 Aligned_cols=132 Identities=12% Similarity=0.176 Sum_probs=86.1
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHH---hhhhHHH-HHhhhcCCChHHHHHHHHHHHHhccccChHH--
Q 006898 440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWA---MQHITPQ-VLEMINNPHYLYRMTILRAISLLAPVMGSEI-- 510 (626)
Q Consensus 440 ~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~---~~~il~~-l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~-- 510 (626)
.++.+.+-++.++-.-|..+...+...... +++ .+.+++. -..++++.|+-+|..+...+|.+...-+...
T Consensus 170 ~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M 249 (342)
T KOG1566|consen 170 KFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVM 249 (342)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHH
Confidence 345556666666666666666666544321 111 1344555 4567899999999999999999875443332
Q ss_pred --hh--hcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--------hhhhcccchHHhhhccCCCccccc
Q 006898 511 --TC--SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------VSTFSVSPFSFMLYLNVNNFNVGF 572 (626)
Q Consensus 511 --~~--~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--------~~~~~i~~~l~~~l~~d~d~~vr~ 572 (626)
+. ..-+..+..++.|+..+++..|......+...-..+ .-.+.++..+. .+..|..++.+.
T Consensus 250 ~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~-~f~~d~~~DeqF 322 (342)
T KOG1566|consen 250 TKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLH-DFHTDRTEDEQF 322 (342)
T ss_pred HHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHH-HhCCCCCchhhh
Confidence 22 356678888999999999999998887766543221 22345666666 677777566555
No 338
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.71 E-value=50 Score=36.00 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHH
Q 006898 454 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFN 533 (626)
Q Consensus 454 ~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~ 533 (626)
-.++..+..+...+.-+.+.+..+=.+.+.+.+.+...|.+.+++.++-.++..+-....+++..+......+|+.-|..
T Consensus 42 peavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAl 121 (970)
T KOG1988|consen 42 PEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARAL 121 (970)
T ss_pred hHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHH
Confidence 34444445555444433344445555666677888889999988888766666554444556666666677888889999
Q ss_pred HHHHHHHHHhhhccc
Q 006898 534 VAKVLQSLIPIVDQS 548 (626)
Q Consensus 534 a~~~l~~i~~~~~~~ 548 (626)
++..++.+....++.
T Consensus 122 lL~ilg~~s~lipEf 136 (970)
T KOG1988|consen 122 LLRILGQLSALIPEF 136 (970)
T ss_pred HHHHHHHhhhhcccc
Confidence 999999888776653
No 339
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=60.99 E-value=55 Score=32.07 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=46.3
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH----HHhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhhhhcHH
Q 006898 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKD 353 (626)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~ 353 (626)
.+.+..+.+.++..++.|...|+..++.+...+|.... ...+...+..+++ ..++.|+...-..+..++..|..+
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 35566666677777777777777777777776665422 1233444555555 456677777766666666655444
Q ss_pred H
Q 006898 354 A 354 (626)
Q Consensus 354 ~ 354 (626)
.
T Consensus 124 p 124 (462)
T KOG2199|consen 124 P 124 (462)
T ss_pred c
Confidence 3
No 340
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=60.62 E-value=6.8 Score=21.72 Aligned_cols=14 Identities=50% Similarity=0.750 Sum_probs=8.6
Q ss_pred HHHHHHHhHHHHHH
Q 006898 179 VRRSAASNLGKFAA 192 (626)
Q Consensus 179 vR~~a~~~l~~l~~ 192 (626)
||..++.+|+.+..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 56777777766543
No 341
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=60.13 E-value=66 Score=26.87 Aligned_cols=50 Identities=24% Similarity=0.222 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC
Q 006898 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD 214 (626)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~ 214 (626)
..+++...+..++.+.++.|++.|.+++-.+-.. .. ..--+.+..+++|.
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~----~l-~pY~d~L~~Lldd~ 63 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWKDP----YL-TPYKDNLENLLDDK 63 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHcCcc
Confidence 3467888888999999999999999999876331 11 11224466666654
No 342
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=57.76 E-value=78 Score=23.71 Aligned_cols=55 Identities=5% Similarity=0.047 Sum_probs=30.4
Q ss_pred hcCCchHHHHHHHHHHHHHHHHhChHHH--hhhhHHHHHhhhcCCChHHHHHHHHHH
Q 006898 445 LQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAI 499 (626)
Q Consensus 445 l~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~il~~l~~~l~~~~~~vR~~a~~~l 499 (626)
...++.+||.....|+..+....|.... -..++..+.....+++..+-..|.+++
T Consensus 27 ~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 27 SNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3445667777777777777776554311 133444444445555555555554444
No 343
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=57.72 E-value=2.6e+02 Score=30.66 Aligned_cols=151 Identities=18% Similarity=0.124 Sum_probs=94.0
Q ss_pred ccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcch
Q 006898 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (626)
Q Consensus 9 ~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~ 88 (626)
..|..|+..+.|.|..+...+-..+......-........++.+...... . .+...|..+ ..+ +...++
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s--~----~~~~il~~~----~~P-~~K~~~ 72 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNS--Q----RALEILVGV----QEP-HDKHLF 72 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCc--H----HHHHHHHhc----CCc-cHHHHH
Confidence 45788999999999999888887777664432222333444444443222 1 122222222 212 334566
Q ss_pred HHHhhhhcCcchHHHHHHHHHHHHHHhhcChhh--H-HHhHH-HHHHHHhcCCccchhHHHhhHhHHhcCCCCh---HHH
Q 006898 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESD--L-VDWYI-PLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILK 161 (626)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~--~-~~~l~-~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~~ 161 (626)
..+...+.. +.-|..++..|+.++..-++.. + ..-+. .++..+..|.+..+-..|+.++..+.++++. .+.
T Consensus 73 ~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L 150 (668)
T PF04388_consen 73 DKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHL 150 (668)
T ss_pred HHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHH
Confidence 666666653 4568889999999888766522 2 22233 3445555677777777888999999998875 466
Q ss_pred HHHHHHHHHhc
Q 006898 162 TELRSIYTQLC 172 (626)
Q Consensus 162 ~~l~~~l~~l~ 172 (626)
.+++.++..++
T Consensus 151 ~~Lf~If~Rl~ 161 (668)
T PF04388_consen 151 PDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHH
Confidence 77777777665
No 344
>COG2733 Predicted membrane protein [Function unknown]
Probab=57.37 E-value=2.1e+02 Score=28.42 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=16.6
Q ss_pred hcCCChHHHHHHHHHHHHhcccc
Q 006898 484 INNPHYLYRMTILRAISLLAPVM 506 (626)
Q Consensus 484 l~~~~~~vR~~a~~~l~~i~~~~ 506 (626)
++++++.+|.....++..+.+.+
T Consensus 310 ~e~~~s~l~~~l~~~~~~~Ge~l 332 (415)
T COG2733 310 YESEDSMLRKRLARAVQSVGEEL 332 (415)
T ss_pred ccCchhHHHHHHHHHHHHHHHHH
Confidence 56777778877777777776644
No 345
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=56.20 E-value=1.7e+02 Score=28.93 Aligned_cols=75 Identities=11% Similarity=-0.006 Sum_probs=52.2
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCC
Q 006898 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE 275 (626)
Q Consensus 201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~ 275 (626)
...+..+.+-+++.++.|...|+..+.++...+++ +.....+...+..+++ ...+.|+......+...+..+.++
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 45667777788888999999999999998888876 2233445566666666 456677776666666666655444
No 346
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=55.74 E-value=34 Score=24.68 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHH-hChHHHh-hhhHHHHHhhhc-CCChHHHHHHHHHHHHhccc
Q 006898 453 RDAAANNLKRLAEE-FGPEWAM-QHITPQVLEMIN-NPHYLYRMTILRAISLLAPV 505 (626)
Q Consensus 453 R~~a~~~l~~l~~~-~~~~~~~-~~il~~l~~~l~-~~~~~vR~~a~~~l~~i~~~ 505 (626)
.++|..+++.+... .|-.... ..+++.+.++.. .+.+.+|-.+..+++.++..
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 35677777777653 3433333 367777777654 57788888888888887763
No 347
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=54.62 E-value=1.4e+02 Score=26.60 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=27.2
Q ss_pred hChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhC-hHHHhhhhHHHHHhhhc
Q 006898 428 LGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG-PEWAMQHITPQVLEMIN 485 (626)
Q Consensus 428 ~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~l~ 485 (626)
+....+...++.-+.-..+.....+.+.+..+|-..+.... .......+...+...+.
T Consensus 79 L~~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~ 137 (193)
T PF12612_consen 79 LDLPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILK 137 (193)
T ss_pred hccHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 33333333344444444455556666666666666654321 11223444555555443
No 348
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=54.51 E-value=4.7e+02 Score=31.73 Aligned_cols=144 Identities=11% Similarity=0.051 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHh-cCCCCHHHHHHHHHhHHHHHHhhCccchh--hh
Q 006898 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEPAHLK--TD 202 (626)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~--~~ 202 (626)
++.+...++.+.+..++..+..++..++..+....+++++..+... ++..+..| .+|+..|..++...+.. .. ..
T Consensus 436 iL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev-~~aL~vL~~L~~~~~~~-l~~fa~ 513 (1426)
T PF14631_consen 436 ILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEV-DAALDVLCELAEKNPSE-LQPFAT 513 (1426)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHH-HHH-HHHTHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHhccHHH-HHHHHH
Confidence 5556677788888899999999999999998776788888777664 45555566 57788888888753321 11 11
Q ss_pred HHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 006898 203 IMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (626)
Q Consensus 203 ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~ 272 (626)
++..++..+.+= ...+|.. ...+..++-.-+. ....+.+--++.+.+++++...+..-+-+.-.+...+
T Consensus 514 ~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~l 585 (1426)
T PF14631_consen 514 FLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHL 585 (1426)
T ss_dssp HHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Confidence 222222223322 3355543 4444443311121 2345566667778888888877765443333333333
No 349
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.94 E-value=55 Score=29.16 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=53.1
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch--hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Q 006898 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (626)
Q Consensus 201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 278 (626)
...+|.|...+.+.+...|-.|-+.+..+....++. ...+.++..++..+...+-+|...+.+.|..+....|. .-
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~--vG 190 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGC--VG 190 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--cc
Confidence 346777777777666666655555555555444432 23566666777777777778888887877776654331 12
Q ss_pred cchHHHHHHhc
Q 006898 279 MDLVPAYVRLL 289 (626)
Q Consensus 279 ~~l~~~l~~~l 289 (626)
..++|++.+++
T Consensus 191 ~aLVPfYRQlL 201 (262)
T KOG3961|consen 191 AALVPFYRQLL 201 (262)
T ss_pred hhhhhHHHHhh
Confidence 34556555544
No 350
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=52.78 E-value=91 Score=27.40 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=29.8
Q ss_pred CchHHHHHHHHHHHHHHHH-hChHHH--hhhhHHHHHhhhcCCChHHHHHHHHHHHHh
Q 006898 448 KVYSIRDAAANNLKRLAEE-FGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLL 502 (626)
Q Consensus 448 ~~~~VR~~a~~~l~~l~~~-~~~~~~--~~~il~~l~~~l~~~~~~vR~~a~~~l~~i 502 (626)
.+......++.|+..+... .|-... ....++.+...+..++..+|..+++.+..+
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3445556666666665542 121111 244566666666667777777777766654
No 351
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=52.64 E-value=1.9e+02 Score=26.66 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898 410 HWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 410 ~~~~r~~~~~~l~~l~~~~~~~~~----~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
....|..++..++.+.+.-+.+.. ...++|.+++.+......-+..|...++++.
T Consensus 138 fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 138 FEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred hHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 345566666666666554433321 2456777777776666666666666665553
No 352
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=52.04 E-value=1.2e+02 Score=26.94 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=13.2
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHH
Q 006898 441 CMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 441 l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
+.+....+-..||..|..++..+.
T Consensus 12 llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 12 LLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444556666666666665
No 353
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.77 E-value=1.3e+02 Score=30.94 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=65.2
Q ss_pred hcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHH
Q 006898 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVL 481 (626)
Q Consensus 406 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~ 481 (626)
+.+++|..-...++.+..-- .+. ...+-.+.+.+++++..|...|+..|..+++..|..+. ..++++.+.
T Consensus 14 l~~pDWa~NleIcD~IN~~~--~~~----~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emV 87 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLINSTE--GGP----KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMV 87 (470)
T ss_pred ccCccHHHHHHHHHHHhcCc--cCc----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45667766665555443211 111 24555677778888888888888888888888887653 467777777
Q ss_pred hhhcC--CChHHHHHHHHHHHHhccccCh
Q 006898 482 EMINN--PHYLYRMTILRAISLLAPVMGS 508 (626)
Q Consensus 482 ~~l~~--~~~~vR~~a~~~l~~i~~~~~~ 508 (626)
.+... ++..||..++..|....+.++.
T Consensus 88 k~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 88 KRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred hccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 76544 4778898888888877665543
No 354
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=49.16 E-value=2.3e+02 Score=26.65 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=33.8
Q ss_pred hcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cchhhhHHHHHHHhhcCCc
Q 006898 152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQ 215 (626)
Q Consensus 152 ~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~d~~ 215 (626)
+.+.+.+....+++..+..++.+..+.+|....+.|..+.....- .....+++..+.++++.+.
T Consensus 177 l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 177 LREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCcc
Confidence 333333344455555666666666666666666666666554432 1233445555555555443
No 355
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=46.58 E-value=39 Score=24.32 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=31.5
Q ss_pred CCcccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhC
Q 006898 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALG 41 (626)
Q Consensus 6 ~~~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~ 41 (626)
.+=|+|.+|+.-.+|.-+..|..|++.|+.|....+
T Consensus 36 ~aGYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 36 AAGYTIQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred cCCcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 456999999999999999999999999999876543
No 356
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=46.50 E-value=3.9e+02 Score=28.49 Aligned_cols=156 Identities=11% Similarity=0.138 Sum_probs=85.3
Q ss_pred hhHHHhHHHHHHHHhcCCccchh--HHHhhHhHHhcCCCChH-HHH---HHHHHHHHhc-----CCCCHHHHHHHHHhHH
Q 006898 120 SDLVDWYIPLVKRLAAGEWFTAR--VSACGLFHIAYPSAPDI-LKT---ELRSIYTQLC-----QDDMPMVRRSAASNLG 188 (626)
Q Consensus 120 ~~~~~~l~~~l~~l~~~~~~~~r--~~a~~~l~~~~~~~~~~-~~~---~l~~~l~~l~-----~d~~~~vR~~a~~~l~ 188 (626)
.+.+.+....+.....+..|... -..|=.+|.+...+++. .+. .++.-++.++ +|...-|-......+|
T Consensus 476 ~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvG 555 (1053)
T COG5101 476 DDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVG 555 (1053)
T ss_pred hhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeec
Confidence 34444455555555555543332 24455556555555443 222 2333333333 2333333333333334
Q ss_pred HHHHhhCc-cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----------hhhhhhhHHHHHHhcCCCCHHH
Q 006898 189 KFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----------QDCVAHILPVIVNFSQDKSWRV 257 (626)
Q Consensus 189 ~l~~~~~~-~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~i~~~l~~~~~d~~~~v 257 (626)
..-+.+.. -.+...++.-+.+.++..-+-|+..|+..+-.+++.++. +.+..+++.-+.+...|-.+.-
T Consensus 556 QYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ 635 (1053)
T COG5101 556 QYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQ 635 (1053)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHH
Confidence 33332211 122333455555666666678999999999999887753 3344455555556667778888
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 006898 258 RYMVANQLYELCEAVGPE 275 (626)
Q Consensus 258 R~~a~~~l~~l~~~~~~~ 275 (626)
.+...++.|.+.+..++.
T Consensus 636 ~htfYeAcg~vIse~p~~ 653 (1053)
T COG5101 636 KHTFYEACGMVISEVPKT 653 (1053)
T ss_pred HhHHHHHHhHHHhccchh
Confidence 888888888887765543
No 357
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.74 E-value=3.1e+02 Score=28.34 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=62.0
Q ss_pred hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh----hhhhhHHHH
Q 006898 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVI 246 (626)
Q Consensus 171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~i~~~l 246 (626)
.+.+++|.+--..|..+-. .+....+.+..+.+.+++.++.+...|+..|..+.+.+|... ....+++-+
T Consensus 13 ~l~~pDWa~NleIcD~IN~------~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~em 86 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINS------TEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEM 86 (470)
T ss_pred cccCccHHHHHHHHHHHhc------CccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4556777665544444322 111223667777777887777888888888888888887632 233455555
Q ss_pred HHhcCC--CCHHHHHHHHHHHHHHHHHhCC
Q 006898 247 VNFSQD--KSWRVRYMVANQLYELCEAVGP 274 (626)
Q Consensus 247 ~~~~~d--~~~~vR~~a~~~l~~l~~~~~~ 274 (626)
...... .+..||..++..|..-...++.
T Consensus 87 Vk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 87 VKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 444433 4667888888888777777665
No 358
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=43.52 E-value=1.1e+02 Score=22.05 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=31.1
Q ss_pred HHHHHhhHHHHhh-hchhhHH-hhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHh
Q 006898 376 LNIISKLDQVNQV-IGIDLLS-QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQ 427 (626)
Q Consensus 376 ~~a~~~L~~~~~~-~~~~~~~-~~i~~~l~~~~~-~~~~~~r~~~~~~l~~l~~~ 427 (626)
++++.+++.++.. .|.+.+. ..+++.+.++.+ ++.+.+|-.+.-+++-++..
T Consensus 5 KaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 4555666655433 3433333 256777777664 45677777777777777654
No 359
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=43.10 E-value=6.2e+02 Score=29.76 Aligned_cols=139 Identities=19% Similarity=0.289 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhh-------c-----CCchhHHHHHHHHHH
Q 006898 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-------Q-----DDQDSVRLLAVEGCA 227 (626)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~-------~-----d~~~~vr~~a~~~l~ 227 (626)
...++...+..++...+..+|.++..+|+..-..+.+ .....+-+.+.... + ...+.+|......+.
T Consensus 193 SaR~LFk~ivPlLks~~~~~r~AaVlaLG~~n~~v~~-~LleeL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hVl~ 271 (1120)
T PF14228_consen 193 SARELFKLIVPLLKSESSSFRDAAVLALGSINLNVYR-TLLEELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHVLR 271 (1120)
T ss_pred CHHHHHHHHhhhhccCcHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHH
Confidence 4467888888888889999999999888875443221 12222333322211 0 013457887788887
Q ss_pred HhhcccCch------hhhhhhHHHHHH---hcC----CCCH---HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 006898 228 ALGKLLEPQ------DCVAHILPVIVN---FSQ----DKSW---RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 291 (626)
Q Consensus 228 ~l~~~~~~~------~~~~~i~~~l~~---~~~----d~~~---~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 291 (626)
.+++.+.+. .....++.++.. .+. +.+| .+|...+..+..++..+.... .+.+
T Consensus 272 llAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~~---------se~f-- 340 (1120)
T PF14228_consen 272 LLAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKAK---------SEWF-- 340 (1120)
T ss_pred HHHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhch---------hhcC--
Confidence 777776542 122234444433 222 2244 467776666666554432110 1111
Q ss_pred ChHHHHHHHHHhHHHHHHhh
Q 006898 292 NEAEVRIAAAGKVTKFCRIL 311 (626)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~ 311 (626)
..+.|..+...+..++...
T Consensus 341 -pfe~RkslF~l~~eWCGy~ 359 (1120)
T PF14228_consen 341 -PFEARKSLFNLFEEWCGYS 359 (1120)
T ss_pred -CHHHHHHHHHHHHHHhhhh
Confidence 1467888888888877643
No 360
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=41.79 E-value=2.3e+02 Score=24.41 Aligned_cols=94 Identities=14% Similarity=0.216 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHHhhChhh------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH--Hhhhh
Q 006898 411 WRVRLAIIEYIPLLASQLGVGF------------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHI 476 (626)
Q Consensus 411 ~~~r~~~~~~l~~l~~~~~~~~------------~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~i 476 (626)
.+.|.-+++.+..+.+..|... ..+.+.|.+.+.+..++..+=..++..+..+...++... ..+.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666665444322 234567777777666667787788888888887776542 12455
Q ss_pred HHHHHh-hhcCCC--hHHHHHHHHHHHHhcc
Q 006898 477 TPQVLE-MINNPH--YLYRMTILRAISLLAP 504 (626)
Q Consensus 477 l~~l~~-~l~~~~--~~vR~~a~~~l~~i~~ 504 (626)
++.+.. .+..++ ...|..+++++..+++
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 666655 444333 4578888888888775
No 361
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=40.22 E-value=4.7e+02 Score=28.78 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=47.2
Q ss_pred hhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH---hhhcHHHHHhhhC-CCCCchHHHHHHHHHHHHHhhhccc--
Q 006898 475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS-- 548 (626)
Q Consensus 475 ~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~---~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~~~~-- 548 (626)
.++..+.+.+.++ ..|..++..++.++..-+.-. ....+++.|++++ .|.+..+-..|+.+|..+...+...
T Consensus 70 ~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~ 147 (668)
T PF04388_consen 70 HLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLG 147 (668)
T ss_pred HHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhh
Confidence 3455555555543 466677777777766433321 1223444444433 5777777777777777777666542
Q ss_pred hhhhcccchHHhhhc
Q 006898 549 VSTFSVSPFSFMLYL 563 (626)
Q Consensus 549 ~~~~~i~~~l~~~l~ 563 (626)
.+.+.++.+.. ++.
T Consensus 148 ~~L~~Lf~If~-Rl~ 161 (668)
T PF04388_consen 148 PHLPDLFNIFG-RLL 161 (668)
T ss_pred HHHHHHHHHHH-HHH
Confidence 33444444444 443
No 362
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=40.10 E-value=3.1e+02 Score=25.54 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=31.7
Q ss_pred HHHHHhccCCC--HHHHHHHHHHHHhhhhhh--cHHHHHHhHHHHHHHhhcCCCHH
Q 006898 322 PCVKELSSDSS--QHVRSALASVIMGMAPLL--GKDATIEQLLPIFLSLLKDEFPD 373 (626)
Q Consensus 322 ~~l~~l~~d~~--~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~ 373 (626)
..+.+++++++ ..+|.++++++..+...- .++.....+...+...++.....
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~ 169 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSF 169 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchH
Confidence 44555566654 689999999998887543 24445555555555545544333
No 363
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=39.91 E-value=2.4e+02 Score=24.13 Aligned_cols=97 Identities=10% Similarity=0.054 Sum_probs=53.4
Q ss_pred HHHHHHHHhhHHHHhhh--chhhHHhhHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHhhCh--hhHH-HHHHHHHHHHh
Q 006898 373 DVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGV--GFFD-DKLGALCMQWL 445 (626)
Q Consensus 373 ~vr~~a~~~L~~~~~~~--~~~~~~~~i~~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~--~~~~-~~l~p~l~~~l 445 (626)
+.-..++.++.+++++- +=+.+....+..+....+.+ +..+-..++..+..+...-.. ..+. +--++.+...+
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 44455666666666541 11222233344444444322 456666777777776642211 0111 22356677777
Q ss_pred cCCchHHHHHHHHHHHHHHHHhCh
Q 006898 446 QDKVYSIRDAAANNLKRLAEEFGP 469 (626)
Q Consensus 446 ~d~~~~VR~~a~~~l~~l~~~~~~ 469 (626)
++++..++..|...+..+....++
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 888888888888887777665544
No 364
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=39.53 E-value=2.2e+02 Score=23.58 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH-HHh-hhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAM-QHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (626)
Q Consensus 437 l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-~~~-~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~ 504 (626)
.+..+...+..++..+...+...+..+|..-... .+. ..-+|.++..+.+|...+-..++.++..+..
T Consensus 59 vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~ 128 (173)
T KOG4646|consen 59 VLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEF 128 (173)
T ss_pred HHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcC
Confidence 4455666666677777777776666665321111 111 2235666666778877777777777776643
No 365
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.34 E-value=7.9e+02 Score=29.66 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=52.8
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
..+...+..-..+++...|..++..+..+....|.... .++.+|.+-.++.|.+..|-..+...+..+-..+|+.
T Consensus 1540 ~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~ 1616 (1621)
T KOG1837|consen 1540 KPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEP 1616 (1621)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchh
Confidence 34555555555666667777777777777776666543 4777888888888888888888888777777777765
No 366
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=37.24 E-value=4.4e+02 Score=26.35 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=21.5
Q ss_pred HHHHHHHHHH--hcCCchHHHHHHHHHHHHHHHHh
Q 006898 435 DKLGALCMQW--LQDKVYSIRDAAANNLKRLAEEF 467 (626)
Q Consensus 435 ~~l~p~l~~~--l~d~~~~VR~~a~~~l~~l~~~~ 467 (626)
..+.|.++++ +-++.+.+|..|.+.+..+++.-
T Consensus 255 ~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~ 289 (373)
T PF14911_consen 255 RLVLPSLLECLMLVNEEPQVKKLATELLQYMVESC 289 (373)
T ss_pred HHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcc
Confidence 3345555554 24557788888888888777653
No 367
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=35.38 E-value=2.4e+02 Score=25.50 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=18.8
Q ss_pred hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006898 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (626)
Q Consensus 239 ~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 270 (626)
...+++++...+.|....||.+...+|.+++.
T Consensus 152 ~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 152 LLEIFEIIELLLGDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred hhHHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666666666655554
No 368
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=34.03 E-value=1.7e+02 Score=22.82 Aligned_cols=53 Identities=15% Similarity=0.028 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc---chhhhHHHHHHHhhcCC
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDD 214 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~ 214 (626)
+.++..+...+.+-++.||..+...|.-+.+..|.. ..+..+++.+..++...
T Consensus 10 ~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 10 PLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 344555556667778888888888888888887764 33455666666666544
No 369
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=33.91 E-value=3.9e+02 Score=24.79 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=50.1
Q ss_pred hHHHHHHHHhcCC-ccchhHHHhhHhHHhcCCCChH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHH
Q 006898 125 WYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (626)
Q Consensus 125 ~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~ 192 (626)
++.|++.....+. .+.-|..+...|+.+...-+++ ...+++|.++...+..+..-+..|...++.+..
T Consensus 124 ylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 124 YLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILL 197 (293)
T ss_pred hhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 4566665544443 4557889999999998887765 346788999998888888777777777776644
No 370
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=33.42 E-value=1.3e+02 Score=23.43 Aligned_cols=37 Identities=8% Similarity=-0.099 Sum_probs=30.2
Q ss_pred hhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch
Q 006898 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ 236 (626)
Q Consensus 200 ~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (626)
.+.++.++...+.+-.++||..++..|.-+.+.+|.+
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 3456677777888889999999999999988888764
No 371
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=32.99 E-value=3.8e+02 Score=25.32 Aligned_cols=63 Identities=32% Similarity=0.358 Sum_probs=45.3
Q ss_pred CCCCcccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhcc
Q 006898 4 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVF 74 (626)
Q Consensus 4 ~~~~~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~ 74 (626)
++|.+.-+..|+-.++.+|+..| .+.+.++.. .-....|+|.|..+.+ ++.+-..+.+.+..+
T Consensus 8 g~dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~------~iv~~DLiPiL~~~~~-~~~l~~~~l~LLV~L 70 (266)
T PF04821_consen 8 GDDCLECLKDLKRFLRRDDEDQR-DVRRQLGEW------NIVQKDLIPILISYKD-DDKLFLACLRLLVNL 70 (266)
T ss_pred CHhHHHHHHHHHHHHHHhCcchH-HHHHHHHHh------chhhhhHHHHHHhccC-chHHHHHHHHHHHHh
Confidence 46667778889999999999888 566555553 2245689999988655 666677777777655
No 372
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=31.08 E-value=7.8e+02 Score=27.45 Aligned_cols=137 Identities=7% Similarity=-0.014 Sum_probs=70.0
Q ss_pred HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcc---cCchhhhhh----hHHHHHHh
Q 006898 177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL---LEPQDCVAH----ILPVIVNF 249 (626)
Q Consensus 177 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~~----i~~~l~~~ 249 (626)
..+|...-..+..+....+- ...+..+|.+..++-|+++..|.=|...+..+... +..+.+... +...+...
T Consensus 96 ~~l~~~F~~~f~~~~~~~~~-~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i 174 (727)
T PF12726_consen 96 EELRELFDAIFSSLQSKKPL-KLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI 174 (727)
T ss_pred HHHHHHHHHHHHHHhccCCc-cccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh
Confidence 44555544444444432221 11266788888888888899999999998887764 333333322 33333333
Q ss_pred -cCCCCHHHHHHHHHHHHHHHHHhCCCccc--------cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH
Q 006898 250 -SQDKSWRVRYMVANQLYELCEAVGPEPTR--------MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 314 (626)
Q Consensus 250 -~~d~~~~vR~~a~~~l~~l~~~~~~~~~~--------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 314 (626)
....++..-...=..+..+...+.++... ..+...+..-+.+...+.-...++++..+.+..|.+
T Consensus 175 ~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~ 248 (727)
T PF12726_consen 175 SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSD 248 (727)
T ss_pred ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHH
Confidence 11122221111223333344333322111 114445555555553344455677887777766544
No 373
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=31.06 E-value=8.9e+02 Score=28.07 Aligned_cols=333 Identities=16% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc---hhhhhh
Q 006898 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAH 241 (626)
Q Consensus 167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ 241 (626)
++..+-....+.+.+-+++.+..+....+- .......+..++.++++. |+.|+.++..|.++.+...- ......
T Consensus 1776 ~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~ 1854 (2235)
T KOG1789|consen 1776 LITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGG 1854 (2235)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCc
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--CCCcccc---chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH
Q 006898 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPTRM---DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 316 (626)
Q Consensus 242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~--~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 316 (626)
++-++.-++...+..+|..+++.++++...- |...... .+-..+...+.| +|+..-.+.+.-..--+.+-.+..
T Consensus 1855 l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD-~PEAaVH~fE~T~EnPELiWn~~~ 1933 (2235)
T KOG1789|consen 1855 LMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRD-SPEAAVHMFESTSENPELIWNEVT 1933 (2235)
T ss_pred hhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhc-CHHHHHHHHhccCCCcccccCHhH
Q ss_pred HHhhHHHHHHhc------------------------------------------cCCCHHHHHHHHHHHHhhhhhhcHHH
Q 006898 317 IQHILPCVKELS------------------------------------------SDSSQHVRSALASVIMGMAPLLGKDA 354 (626)
Q Consensus 317 ~~~l~~~l~~l~------------------------------------------~d~~~~vr~~~~~~l~~l~~~~~~~~ 354 (626)
.+.+-..+..+. .++.|.+| .+..
T Consensus 1934 r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR--------------~Pk~ 1999 (2235)
T KOG1789|consen 1934 RQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLR--------------HPKL 1999 (2235)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCccc--------------CHHH
Q ss_pred HHHhHHHHHHHhhcCCC-----HHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH--h
Q 006898 355 TIEQLLPIFLSLLKDEF-----PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS--Q 427 (626)
Q Consensus 355 ~~~~l~~~l~~~l~d~~-----~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~--~ 427 (626)
|...++..+..++.... +..-..|.-+|-..-..+....-.-..+|.+...+...+...-..++..+..++. .
T Consensus 2000 FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~ 2079 (2235)
T KOG1789|consen 2000 FLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF 2079 (2235)
T ss_pred HHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH
Q ss_pred hChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhhc-------CCChHHHHHHH
Q 006898 428 LGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMIN-------NPHYLYRMTIL 496 (626)
Q Consensus 428 ~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~l~-------~~~~~vR~~a~ 496 (626)
+......-.....++..+......+- -|++++..+...-..+ ..+-.++|.+++++. +.-...|....
T Consensus 2080 C~~AMA~l~~i~~~m~~mkK~~~~~G-LA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aas~A~Iv 2158 (2235)
T KOG1789|consen 2080 CCDAMAQLPCIDGIMKSMKKQPSLMG-LAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNGAAARAEIV 2158 (2235)
T ss_pred HHHHHhccccchhhHHHHHhcchHHH-HHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCchhHHHHHHH
Q ss_pred HHHHHhccccChHHhhhcHH
Q 006898 497 RAISLLAPVMGSEITCSRLL 516 (626)
Q Consensus 497 ~~l~~i~~~~~~~~~~~~~l 516 (626)
.++...........-..+++
T Consensus 2159 ~aLk~~~~~l~vg~kV~EIL 2178 (2235)
T KOG1789|consen 2159 DALKSAILDLKVGQKVAEIL 2178 (2235)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 374
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=29.35 E-value=3.4e+02 Score=22.66 Aligned_cols=89 Identities=22% Similarity=0.186 Sum_probs=51.3
Q ss_pred chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH-----Hh---hhcHHHHHh
Q 006898 449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-----IT---CSRLLPVVI 520 (626)
Q Consensus 449 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~-----~~---~~~~l~~l~ 520 (626)
...+..+|.-++.. .. ..+.+.+.+++-+.+++...|....+.+..+++.+... .+ ...-+|.++
T Consensus 21 ~qSi~kaa~fAlk~--~~-----~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~~l~~dL~~Iv 93 (139)
T PF12243_consen 21 QQSIQKAAQFALKN--RD-----MEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYVSMLQRDLPRIV 93 (139)
T ss_pred HHHHHHHHHHHHHc--cc-----cHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 34455555555443 11 23568888888888889999999999988887643221 12 233444444
Q ss_pred hhCCCCC-c--hHHHHHHHHHHHHHhh
Q 006898 521 NASKDRV-P--NIKFNVAKVLQSLIPI 544 (626)
Q Consensus 521 ~~l~d~~-~--~vR~~a~~~l~~i~~~ 544 (626)
...--++ . .=+..+-++|..+...
T Consensus 94 ~~V~P~~~~g~~N~~~~~kvL~~~~~k 120 (139)
T PF12243_consen 94 DAVAPPDNSGAANLKSVRKVLKNWSKK 120 (139)
T ss_pred HHhCCCCCccchHHHHHHHHHHHHHHc
Confidence 4432222 2 2344555666665544
No 375
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=28.88 E-value=8.5e+02 Score=27.17 Aligned_cols=136 Identities=10% Similarity=0.044 Sum_probs=66.4
Q ss_pred CchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhh---cChhhHH----HhHHHHHH
Q 006898 59 DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ---MRESDLV----DWYIPLVK 131 (626)
Q Consensus 59 ~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~---~~~~~~~----~~l~~~l~ 131 (626)
.++.+|...-..+..+...-. ....+..+|-+..++-++++.+|.=|...+..+.+. +..+.+. +.+...+.
T Consensus 94 ~~~~l~~~F~~~f~~~~~~~~-~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~ 172 (727)
T PF12726_consen 94 DDEELRELFDAIFSSLQSKKP-LKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLY 172 (727)
T ss_pred CcHHHHHHHHHHHHHHhccCC-ccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHH
Confidence 344455554444444432111 111156677777777788998998888888888764 4443332 23333344
Q ss_pred HHhcCCccchh--HHHhhHhHHhcCCCChHHH---------HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc
Q 006898 132 RLAAGEWFTAR--VSACGLFHIAYPSAPDILK---------TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP 196 (626)
Q Consensus 132 ~l~~~~~~~~r--~~a~~~l~~~~~~~~~~~~---------~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~ 196 (626)
.+ +...+..- ..-=..+..+...++++.. ..+..++..-+.+.....-...++++..+.+..|.
T Consensus 173 ~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~ 247 (727)
T PF12726_consen 173 RI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGS 247 (727)
T ss_pred Hh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHH
Confidence 34 21111110 0011122223333333211 11344455545555344445567778877776664
No 376
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=27.95 E-value=6.2e+02 Score=25.25 Aligned_cols=207 Identities=17% Similarity=0.149 Sum_probs=96.1
Q ss_pred cHHHHHHHhcCccHHHHHHHHhhHHHHHH-hhChHhhhh---hhcccccc-ccCCchHHHHHHHHHHhccccccC----C
Q 006898 10 PIAVLIDELKNDDIQLRLNSIRRLSTIAR-ALGEERTRK---ELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG----G 80 (626)
Q Consensus 10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~-~~~~~~~~~---~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~----~ 80 (626)
.....+.+.+......|..+++.+...+. .+-+++..+ .+...+.. .+.+..+-...++..+|-.....| +
T Consensus 61 ~~~d~lde~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ 140 (427)
T KOG2842|consen 61 KLKDDLDEVKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEE 140 (427)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchh
Confidence 33444555677778889999888876644 333444333 33333333 345555544445545554433222 1
Q ss_pred cchhhcchHHHhhhhcCc--chHHHHHHHHHHHHHHhhcCh--hhHHHhHHHHH----HHHhcCCccchhH---------
Q 006898 81 VEHAHVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLV----KRLAAGEWFTARV--------- 143 (626)
Q Consensus 81 ~~~~~~l~~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~--~~~~~~l~~~l----~~l~~~~~~~~r~--------- 143 (626)
++......|.+..+..+. ...-|..++-+++..+-.... ..+...+.... .....+++..+-.
T Consensus 141 ee~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 220 (427)
T KOG2842|consen 141 EEWTKTLGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLL 220 (427)
T ss_pred hHHHhccchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHH
Confidence 233444555554444444 444566666666543332221 11111111111 1111222211111
Q ss_pred HHhhHhHH---hcCCC-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---c---chhhhHHHHHHHhhcC
Q 006898 144 SACGLFHI---AYPSA-PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---A---HLKTDIMSIFEDLTQD 213 (626)
Q Consensus 144 ~a~~~l~~---~~~~~-~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~---~~~~~ll~~l~~l~~d 213 (626)
.+...-+. +++.. ++....-+.|-+..++......+|.++...+..+...... . .-.+.+...+..+.+|
T Consensus 221 ~~~~~~a~~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latd 300 (427)
T KOG2842|consen 221 TCLTAWSLLLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATD 300 (427)
T ss_pred HHHHHHHHHHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHh
Confidence 01111111 11111 1112233556666777777788888887777766655432 1 1234566666666666
Q ss_pred Cch
Q 006898 214 DQD 216 (626)
Q Consensus 214 ~~~ 216 (626)
.+.
T Consensus 301 ssK 303 (427)
T KOG2842|consen 301 SSK 303 (427)
T ss_pred hhh
Confidence 543
No 377
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=27.93 E-value=4.1e+02 Score=23.15 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHH
Q 006898 398 LLPAIVELAEDRHWRVRLAIIEYIPLL 424 (626)
Q Consensus 398 i~~~l~~~~~~~~~~~r~~~~~~l~~l 424 (626)
.+..+...+.+++.++|..+++.+..+
T Consensus 159 ~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 159 SVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 344444444555555555555555544
No 378
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=27.80 E-value=3.6e+02 Score=22.43 Aligned_cols=69 Identities=6% Similarity=-0.016 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchh--hhHHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK--TDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~--~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (626)
-+.+..+...+..++......++..+.+++-.-....+. ..=+|.+...++++...+-..++..+..+.
T Consensus 57 l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 57 LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence 456778888888888887776666666554432221111 112455566677887777777777776554
No 379
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.71 E-value=3e+02 Score=27.19 Aligned_cols=59 Identities=22% Similarity=0.201 Sum_probs=28.1
Q ss_pred HhccCCCHHHHHHHHHHHHhhhhhhc-HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHH
Q 006898 326 ELSSDSSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (626)
Q Consensus 326 ~l~~d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~ 384 (626)
.+.++++..=|..++..++.....-+ .....+++.+.+..++.|..+.+|..++.+|+.
T Consensus 14 ~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 14 RLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 33444444444444433333332222 223344455555556666666666666666554
No 380
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.69 E-value=1.2e+03 Score=28.28 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=85.3
Q ss_pred hhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhH---
Q 006898 47 KELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL--- 122 (626)
Q Consensus 47 ~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~--- 122 (626)
+.+.|+--- ....+++||..+.+|...-++ .-|..+...+..-..+.+..+-+.+.+.+..+.........
T Consensus 1036 ~fl~Pfe~im~~s~s~~Irelv~rC~~~nik-----SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~ 1110 (1514)
T KOG0929|consen 1036 DFLRPFEHIMKRSSSAEIRELVVRCISSNIK-----SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQE 1110 (1514)
T ss_pred hhcCcchHHhhccCcchhHHHHHhhhhhhhh-----hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhh
Confidence 344455443 345678899999999883222 34777888888888888888888888888766655443222
Q ss_pred ---HHhHHHHHHHHhcCC-ccchhHHHhhHhHH----hcCC-----CC-------h---HHHHHHHHHHHHhcCCCCHHH
Q 006898 123 ---VDWYIPLVKRLAAGE-WFTARVSACGLFHI----AYPS-----AP-------D---ILKTELRSIYTQLCQDDMPMV 179 (626)
Q Consensus 123 ---~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~----~~~~-----~~-------~---~~~~~l~~~l~~l~~d~~~~v 179 (626)
....++.+...+.+. .+..-..+...+.. +.+. .. . ..+-.++-.+...+.+....|
T Consensus 1111 ~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~v 1190 (1514)
T KOG0929|consen 1111 MDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEV 1190 (1514)
T ss_pred hHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHH
Confidence 223444444444322 11111111111111 1111 11 0 012233333344455778889
Q ss_pred HHHHHHhHHHHHHhhCc---cchhhhHHH
Q 006898 180 RRSAASNLGKFAATVEP---AHLKTDIMS 205 (626)
Q Consensus 180 R~~a~~~l~~l~~~~~~---~~~~~~ll~ 205 (626)
|..+.+.+-.+....|. +.+|..+..
T Consensus 1191 r~~al~vlF~il~~~g~~F~~~~We~v~~ 1219 (1514)
T KOG0929|consen 1191 RKRALEVLFDILKEHGDDFSKEFWEDVFR 1219 (1514)
T ss_pred HHHHHHHHHHHHHhhhhhccHHHHHHHHH
Confidence 99999998888877765 345555544
No 381
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=25.93 E-value=6.7e+02 Score=29.27 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc----CCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh
Q 006898 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK----DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406 (626)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~----d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~ 406 (626)
++.+||..|.+++..+. ....-+.+|.+.+.|+ ...+-||--.-+++..+--. ..+.-.|...+
T Consensus 902 PDqeVR~~AVqwi~~ls-----~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~~a-------h~lYWlLk~~l 969 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIARLS-----NDELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQFA-------HELYWLLKDAL 969 (1639)
T ss_pred CcHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchHHH-------HHHHHHHhhcc
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHH-HHHHhcCCchHHHHHH
Q 006898 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL-CMQWLQDKVYSIRDAA 456 (626)
Q Consensus 407 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~-l~~~l~d~~~~VR~~a 456 (626)
.|....+|. -..+..+....|+..-.+..... +.+.|.+-...||.++
T Consensus 970 ~d~qfs~rY--q~ll~aLl~~~gk~L~~ef~~Q~~Lv~~L~~iae~Vr~as 1018 (1639)
T KOG0905|consen 970 DDSQFSLRY--QNLLAALLDCCGKNLREEFKKQHKLVNELGSIAEDVRSAS 1018 (1639)
T ss_pred ccceeehHH--HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 382
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.92 E-value=4.8e+02 Score=25.83 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=32.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006898 401 AIVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (626)
Q Consensus 401 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l 463 (626)
.+....++++..-|..+...++.....-+ ...-.+.+.+.+..++.|....+|..++.+|++.
T Consensus 11 ~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 11 DLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 34444455554444444443333332222 1222345566666677777777777777766553
No 383
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=24.92 E-value=1e+03 Score=26.83 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=29.5
Q ss_pred hcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCC------CCCchHHHHHHHHHHHHHhhhccc
Q 006898 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK------DRVPNIKFNVAKVLQSLIPIVDQS 548 (626)
Q Consensus 484 l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~------d~~~~vR~~a~~~l~~i~~~~~~~ 548 (626)
....+..++...++.+..+.- |.....+.+...+...++ +..++- ...+.++.++...++.+
T Consensus 238 ~~r~~~~i~~~l~RiLP~Lt~--G~~e~m~~Lv~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~ 305 (802)
T PF13764_consen 238 FVRSNPQILQALARILPFLTY--GNEEKMDALVEHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNN 305 (802)
T ss_pred cccCCHHHHHHHHHHhhHHhc--CCHHHHHHHHHHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCC
Confidence 334467777777777776653 333222333333322221 111111 23467777777666543
No 384
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=24.56 E-value=2.9e+02 Score=20.94 Aligned_cols=57 Identities=16% Similarity=0.125 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 490 LYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 490 ~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
..|.+++-+++.++...+-. .+.+.++..|....+| ...|+..+-++|.++...-.+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 45778888888888765432 3677778888888886 678999999999998877644
No 385
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.58 E-value=1.5e+02 Score=23.72 Aligned_cols=28 Identities=7% Similarity=-0.003 Sum_probs=14.2
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 006898 476 ITPQVLEMINNPHYLYRMTILRAISLLA 503 (626)
Q Consensus 476 il~~l~~~l~~~~~~vR~~a~~~l~~i~ 503 (626)
.++.+..-+.|++..|+..|+..+...+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c 36 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEAC 36 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555444
No 386
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=23.23 E-value=96 Score=22.40 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=27.2
Q ss_pred hcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhc
Q 006898 513 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (626)
Q Consensus 513 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 546 (626)
.+.++.+..+.....+.-|..|+++|++|....+
T Consensus 38 GYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 38 GYTIQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred CcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 4667778888888888888888888888877654
No 387
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=22.82 E-value=9.6e+02 Score=25.68 Aligned_cols=336 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred cchHHHhhhhcCc--chHHHHHHHHHHHHHHhhcCh-----------hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHh
Q 006898 86 VLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRE-----------SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA 152 (626)
Q Consensus 86 ~l~~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~-----------~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~ 152 (626)
.++.-+..+..+. +.+++.+.++.+..+..-+.. ....+.+.|.+.++... .+.-..+.-+...+
T Consensus 129 ~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~l 206 (552)
T PF14222_consen 129 EFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTL 206 (552)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHH
Q ss_pred cCCCChH----HHH-HHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhC-------ccchhhhHHHHHHHhhcC-------
Q 006898 153 YPSAPDI----LKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE-------PAHLKTDIMSIFEDLTQD------- 213 (626)
Q Consensus 153 ~~~~~~~----~~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~-------~~~~~~~ll~~l~~l~~d------- 213 (626)
....+++ .+. .++..+..-++|. ..|..++.++.++.-..- .......+-+.+..+...
T Consensus 207 LCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~ 284 (552)
T PF14222_consen 207 LCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIP 284 (552)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccC
Q ss_pred CchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHHhCCCccccchHH-----
Q 006898 214 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-----SWRVRYMVANQLYELCEAVGPEPTRMDLVP----- 283 (626)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~-----~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~----- 283 (626)
.|...-..-++.+..++....+-.+.+.++|.+..-.... +++--.-+++++-.+..............+
T Consensus 285 ~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~ 364 (552)
T PF14222_consen 285 RDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDPS 364 (552)
T ss_pred CChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCCC
Q ss_pred ---------------HHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhcc------------------C
Q 006898 284 ---------------AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS------------------D 330 (626)
Q Consensus 284 ---------------~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~------------------d 330 (626)
......++.....-.....+++.+...++...-...+.+.-....+ +
T Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~~~~ 444 (552)
T PF14222_consen 365 GNTLRVKYTPSNEYLSNEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDMVTD 444 (552)
T ss_pred CcccccccCcccccccchhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCccccccccccccccc
Q ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh-chhhHHhhHHHHHHHHhcCC
Q 006898 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLLSQSLLPAIVELAEDR 409 (626)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~~~~~~~i~~~l~~~~~~~ 409 (626)
....+ .-...++..+-..++.......++.++....-..++.|+..|..+|..++... ............+.+ ..|.
T Consensus 445 ~~~~~-~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p~~~~vi~~Fa~Fif~-~~d~ 522 (552)
T PF14222_consen 445 QKPQL-DLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKPNRQQVITGFARFIFR-FDDK 522 (552)
T ss_pred ccchh-HHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHee-Cccc
Q ss_pred ChHH----------HHHHHHHHHHHHHh
Q 006898 410 HWRV----------RLAIIEYIPLLASQ 427 (626)
Q Consensus 410 ~~~~----------r~~~~~~l~~l~~~ 427 (626)
.+.. =...+...-.+.+.
T Consensus 523 ~~~~~~~~~l~~~~~~~~L~lyveLL~~ 550 (552)
T PF14222_consen 523 YPSMYDGGYLGSGEIESLLKLYVELLEI 550 (552)
T ss_pred CccchhhhccchHHHHHHHHHHHHHHHH
No 388
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=22.37 E-value=2e+02 Score=22.94 Aligned_cols=34 Identities=26% Similarity=0.194 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 006898 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (626)
Q Consensus 433 ~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (626)
+....++.+..-+.|++.+|+..|.+.|...+..
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4456677888889999999999999988887764
No 389
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.36 E-value=7.5e+02 Score=24.27 Aligned_cols=144 Identities=11% Similarity=0.023 Sum_probs=83.8
Q ss_pred HHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhhHHHHH-----HHHHHHHh--cCCchHHHHHHHHHHHHHHHHhChH
Q 006898 399 LPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDDKL-----GALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 399 ~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~~l-----~p~l~~~l--~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
+..+.+++.|. ...+|..+=++++.+....|....++.+ .|.+..++ ...++.|-+.++.++..++-...+.
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 55666777664 4566655555555555444544443332 23333332 3456789999999988887654332
Q ss_pred H---HhhhhHHH-HHhhhcCC-ChHHHHHHHHHHHHhccccCh--HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHH
Q 006898 471 W---AMQHITPQ-VLEMINNP-HYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (626)
Q Consensus 471 ~---~~~~il~~-l~~~l~~~-~~~vR~~a~~~l~~i~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~ 542 (626)
- +....-.. +..+-.+| ...+...++..+.+++..... ..+...-..-|+...+...+.++..+-.+|..+.
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 1 11111122 22344566 456889999999998754321 2233444455666677778888888888887764
No 390
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=21.47 E-value=6.3e+02 Score=23.06 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006898 410 HWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (626)
Q Consensus 410 ~~~~r~~~~~~l~~l~~~~~~~~~----~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l 463 (626)
....|..++..++.+.+.-++... ...++|.+++.+......-+..|+..++.+
T Consensus 159 fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qki 216 (315)
T COG5209 159 FEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKI 216 (315)
T ss_pred cceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345666666666666654433322 245677777776665555555555555444
Done!