Query 006898
Match_columns 626
No_of_seqs 288 out of 2664
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 11:52:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 3.1E-61 1.1E-65 517.3 55.9 579 3-591 4-586 (588)
2 1b3u_A Protein (protein phosph 100.0 2.9E-46 1E-50 400.9 48.4 523 19-542 58-586 (588)
3 4fdd_A Transportin-1; heat rep 100.0 6.3E-35 2.1E-39 325.2 52.3 567 16-596 55-703 (852)
4 4fdd_A Transportin-1; heat rep 100.0 2.9E-34 9.9E-39 319.8 54.2 571 10-592 129-784 (852)
5 1u6g_C TIP120 protein, CAND1; 100.0 1.1E-34 3.7E-39 335.8 46.0 570 10-591 49-720 (1230)
6 2bpt_A Importin beta-1 subunit 100.0 1.6E-33 5.4E-38 315.9 52.5 575 11-597 136-817 (861)
7 1u6g_C TIP120 protein, CAND1; 100.0 7E-34 2.4E-38 329.0 46.1 574 8-595 5-682 (1230)
8 2bpt_A Importin beta-1 subunit 100.0 4.5E-32 1.6E-36 304.0 50.9 570 14-596 44-715 (861)
9 1qgr_A Protein (importin beta 100.0 7.9E-31 2.7E-35 294.5 54.0 574 10-594 129-873 (876)
10 1qgr_A Protein (importin beta 100.0 2.8E-31 9.7E-36 298.1 44.4 571 13-596 94-831 (876)
11 2vgl_B AP-2 complex subunit be 99.9 1.1E-23 3.7E-28 223.2 35.9 508 8-542 12-531 (591)
12 1ibr_B P95, importin beta-1 su 99.9 7.9E-23 2.7E-27 211.9 33.5 390 50-469 4-441 (462)
13 1ibr_B P95, importin beta-1 su 99.9 7E-22 2.4E-26 204.7 40.1 382 171-559 9-457 (462)
14 2vgl_B AP-2 complex subunit be 99.9 3.5E-22 1.2E-26 211.6 37.3 487 56-572 22-521 (591)
15 1jdh_A Beta-catenin; beta-cate 99.9 1.8E-22 6.3E-27 212.9 28.7 472 71-590 2-528 (529)
16 2z6g_A B-catenin; FULL-length, 99.9 8.5E-22 2.9E-26 214.8 33.4 484 95-592 124-663 (780)
17 3now_A UNC-45 protein, SD10334 99.9 1.7E-20 5.8E-25 198.9 40.5 575 10-594 93-784 (810)
18 2z6h_A Catenin beta-1, beta-ca 99.9 9.4E-21 3.2E-25 203.7 37.5 494 74-569 2-552 (644)
19 3now_A UNC-45 protein, SD10334 99.9 2.1E-19 7.1E-24 190.6 46.4 570 11-591 51-736 (810)
20 2jdq_A Importin alpha-1 subuni 99.9 4.4E-21 1.5E-25 197.9 32.2 379 165-543 22-443 (450)
21 2z6g_A B-catenin; FULL-length, 99.9 1.1E-20 3.7E-25 206.1 35.9 493 11-507 117-666 (780)
22 1wa5_B Importin alpha subunit; 99.9 8.2E-21 2.8E-25 199.6 32.2 380 165-544 89-511 (530)
23 1wa5_B Importin alpha subunit; 99.9 8.7E-21 3E-25 199.4 31.1 380 202-591 87-509 (530)
24 2jdq_A Importin alpha-1 subuni 99.9 2E-20 6.8E-25 193.0 33.2 340 88-427 22-391 (450)
25 2z6h_A Catenin beta-1, beta-ca 99.9 1.1E-20 3.9E-25 203.0 32.2 459 123-591 12-526 (644)
26 1jdh_A Beta-catenin; beta-cate 99.9 4.6E-20 1.6E-24 194.5 30.7 476 8-502 16-528 (529)
27 4b8j_A Importin subunit alpha- 99.9 1.5E-19 5.1E-24 190.1 33.4 380 165-544 76-497 (528)
28 1w63_A Adapter-related protein 99.9 1.6E-19 5.4E-24 191.8 33.6 506 11-543 36-577 (618)
29 4b8j_A Importin subunit alpha- 99.9 1.6E-19 5.5E-24 189.8 30.2 379 203-592 75-496 (528)
30 1w63_A Adapter-related protein 99.9 2.7E-18 9.2E-23 182.3 39.4 529 9-590 10-575 (618)
31 2vgl_A Adaptor protein complex 99.8 1.3E-16 4.5E-21 168.6 36.2 508 11-541 37-587 (621)
32 2vgl_A Adaptor protein complex 99.8 3.6E-16 1.2E-20 165.2 35.1 539 5-590 7-587 (621)
33 3ul1_B Importin subunit alpha- 99.8 9.5E-17 3.2E-21 166.9 28.6 377 204-590 59-476 (510)
34 3ul1_B Importin subunit alpha- 99.8 2.3E-16 8E-21 164.0 31.4 378 166-543 60-478 (510)
35 3tpo_A Importin subunit alpha- 99.8 2.2E-16 7.4E-21 165.3 31.0 377 204-590 78-495 (529)
36 3tpo_A Importin subunit alpha- 99.8 4E-16 1.4E-20 163.2 32.6 378 166-543 79-497 (529)
37 1oyz_A Hypothetical protein YI 99.7 1.5E-16 5.1E-21 152.3 22.0 255 241-540 23-279 (280)
38 1oyz_A Hypothetical protein YI 99.7 1.2E-16 4.2E-21 152.9 20.9 247 280-572 23-271 (280)
39 1wa5_C Importin alpha RE-expor 99.7 6.1E-14 2.1E-18 157.7 45.1 527 10-545 6-672 (960)
40 1wa5_C Importin alpha RE-expor 99.7 2.7E-14 9.4E-19 160.5 41.8 402 155-559 77-600 (960)
41 2x1g_F Cadmus; transport prote 99.7 3.8E-14 1.3E-18 160.1 32.8 441 98-546 52-618 (971)
42 2x1g_F Cadmus; transport prote 99.7 5.9E-13 2E-17 150.3 41.4 531 10-548 123-819 (971)
43 2x19_B Importin-13; nuclear tr 99.7 5.3E-13 1.8E-17 150.9 39.7 401 139-546 117-602 (963)
44 3m1i_C Exportin-1; heat repeat 99.7 9.7E-13 3.3E-17 149.2 41.2 403 140-546 115-621 (1049)
45 2x19_B Importin-13; nuclear tr 99.6 6.2E-12 2.1E-16 142.1 47.0 522 10-546 25-652 (963)
46 3ltj_A Alpharep-4; protein eng 99.6 1.7E-14 5.8E-19 130.4 20.9 185 162-386 13-197 (201)
47 3ltm_A Alpha-REP4; protein eng 99.6 1.3E-14 4.3E-19 132.4 19.6 184 164-387 20-203 (211)
48 3ltj_A Alpharep-4; protein eng 99.6 2.5E-14 8.4E-19 129.3 20.2 187 198-424 10-196 (201)
49 3ltm_A Alpha-REP4; protein eng 99.6 2.2E-14 7.5E-19 130.8 20.0 183 202-424 19-201 (211)
50 2qk2_A LP04448P; mini spindles 99.6 6.2E-14 2.1E-18 130.6 21.4 185 281-470 16-210 (242)
51 2qk2_A LP04448P; mini spindles 99.6 6.4E-14 2.2E-18 130.5 20.8 191 238-432 12-211 (242)
52 2qk1_A Protein STU2; STU2P, XM 99.5 5E-13 1.7E-17 123.8 19.8 197 198-394 12-227 (249)
53 3opb_A SWI5-dependent HO expre 99.5 9.8E-11 3.4E-15 122.0 38.8 445 97-544 181-729 (778)
54 4hat_C Exportin-1; heat repeat 99.5 8.4E-11 2.9E-15 130.4 40.6 345 201-548 193-623 (1023)
55 3ibv_A Exportin-T; karyopherin 99.5 6.9E-11 2.4E-15 131.1 39.8 523 22-548 56-735 (980)
56 3l6x_A Catenin delta-1; cateni 99.5 8.9E-12 3E-16 128.0 30.0 347 198-544 44-477 (584)
57 4hxt_A De novo protein OR329; 99.5 9.2E-13 3.1E-17 123.8 21.1 230 361-600 5-249 (252)
58 4hxt_A De novo protein OR329; 99.5 2.3E-12 7.8E-17 121.1 23.3 230 282-547 4-245 (252)
59 1xm9_A Plakophilin 1; armadill 99.5 4.2E-12 1.4E-16 129.7 26.6 149 396-544 282-450 (457)
60 3opb_A SWI5-dependent HO expre 99.5 7.2E-11 2.5E-15 123.0 35.5 484 11-506 170-730 (778)
61 3m1i_C Exportin-1; heat repeat 99.5 7.8E-11 2.7E-15 133.6 38.8 367 176-547 113-573 (1049)
62 4ady_A RPN2, 26S proteasome re 99.5 2E-09 6.8E-14 114.7 44.7 272 280-591 392-675 (963)
63 2qk1_A Protein STU2; STU2P, XM 99.5 1.1E-12 3.6E-17 121.5 17.2 193 131-327 22-234 (249)
64 4db8_A Armadillo-repeat protei 99.5 3.1E-12 1.1E-16 120.1 20.7 224 280-503 12-250 (252)
65 3l6x_A Catenin delta-1; cateni 99.5 2.5E-11 8.7E-16 124.6 28.7 359 222-590 28-474 (584)
66 4db8_A Armadillo-repeat protei 99.5 2.6E-12 9E-17 120.6 19.9 224 320-543 13-251 (252)
67 1xm9_A Plakophilin 1; armadill 99.5 1.4E-11 4.9E-16 125.8 26.1 336 166-504 5-449 (457)
68 4ady_A RPN2, 26S proteasome re 99.5 2.3E-10 7.8E-15 121.8 35.4 331 178-542 373-718 (963)
69 3ibv_A Exportin-T; karyopherin 99.4 5.1E-10 1.8E-14 124.1 38.3 392 175-600 102-574 (980)
70 3nmz_A APC variant protein; pr 99.4 1E-10 3.4E-15 117.5 28.3 247 299-545 167-452 (458)
71 3nmz_A APC variant protein; pr 99.4 3.7E-10 1.3E-14 113.3 27.6 246 260-506 167-452 (458)
72 4hat_C Exportin-1; heat repeat 99.4 2E-08 6.9E-13 111.5 43.4 487 10-510 17-624 (1023)
73 2iw3_A Elongation factor 3A; a 99.3 1.7E-10 5.7E-15 124.6 23.1 283 297-596 31-328 (986)
74 4db6_A Armadillo repeat protei 99.3 7.4E-11 2.5E-15 107.2 16.6 184 360-543 14-209 (210)
75 1lrv_A LRV, leucine-rich repea 99.3 3.1E-13 1.1E-17 122.9 0.4 187 169-461 56-242 (244)
76 3gjx_A Exportin-1; transport, 99.3 6.1E-08 2.1E-12 107.1 41.9 480 58-548 39-649 (1073)
77 1lrv_A LRV, leucine-rich repea 99.3 9.2E-13 3.1E-17 119.8 2.3 188 91-383 55-242 (244)
78 4db6_A Armadillo repeat protei 99.2 5.3E-10 1.8E-14 101.5 19.7 146 359-504 55-209 (210)
79 2iw3_A Elongation factor 3A; a 99.2 4.7E-09 1.6E-13 113.4 26.8 255 241-504 54-324 (986)
80 3nmw_A APC variant protein; AR 99.2 4.6E-09 1.6E-13 102.2 23.8 215 332-546 97-337 (354)
81 3a6p_A Exportin-5; exportin-5, 99.1 1.5E-07 5.2E-12 107.3 32.7 328 216-546 221-660 (1204)
82 2of3_A ZYG-9; multifunctional 99.0 2E-08 6.8E-13 91.5 19.7 177 288-470 54-241 (266)
83 2db0_A 253AA long hypothetical 99.0 1.6E-07 5.5E-12 77.5 22.2 214 201-424 31-244 (253)
84 1xqr_A HSPBP1 protein; armadil 99.0 1.8E-08 6.2E-13 95.2 19.4 187 358-544 28-239 (296)
85 2db0_A 253AA long hypothetical 99.0 1.3E-07 4.5E-12 78.0 21.5 214 162-386 31-245 (253)
86 3nmw_A APC variant protein; AR 99.0 2.8E-08 9.7E-13 96.6 21.1 215 293-507 97-337 (354)
87 3oc3_A Helicase MOT1, MOT1; re 99.0 5E-09 1.7E-13 102.1 15.3 255 164-461 175-432 (800)
88 3tjz_B Coatomer subunit gamma; 99.0 6.7E-09 2.3E-13 99.6 15.9 291 154-461 59-349 (355)
89 2of3_A ZYG-9; multifunctional 99.0 6.9E-08 2.4E-12 88.0 21.3 137 407-549 97-242 (266)
90 3a6p_A Exportin-5; exportin-5, 99.0 6.4E-07 2.2E-11 102.2 34.1 399 156-559 82-631 (1204)
91 3oc3_A Helicase MOT1, MOT1; re 99.0 2E-08 6.8E-13 97.9 17.3 253 12-305 177-432 (800)
92 3gjx_A Exportin-1; transport, 98.9 7.3E-06 2.5E-10 90.8 39.3 469 86-597 29-600 (1073)
93 3b2a_A TON_1937, putative unch 98.9 6.2E-08 2.1E-12 83.8 16.8 183 358-544 33-219 (265)
94 1xqr_A HSPBP1 protein; armadil 98.9 4E-08 1.4E-12 92.8 16.5 171 412-592 55-238 (296)
95 3b2a_A TON_1937, putative unch 98.9 3.2E-07 1.1E-11 79.4 19.5 184 162-349 32-219 (265)
96 3l9t_A Putative uncharacterize 98.9 5.4E-08 1.9E-12 85.3 14.9 140 200-350 69-209 (240)
97 4ffb_C Protein STU2; tubulin f 98.9 2.6E-08 8.9E-13 94.3 14.1 182 402-596 14-216 (278)
98 3tjz_B Coatomer subunit gamma; 98.9 6.8E-08 2.3E-12 92.6 16.6 243 284-540 108-350 (355)
99 4ffb_C Protein STU2; tubulin f 98.8 1.8E-07 6.2E-12 88.5 18.9 182 286-470 15-217 (278)
100 3l9t_A Putative uncharacterize 98.8 1.7E-07 5.8E-12 82.2 15.7 138 124-271 70-208 (240)
101 1te4_A Conserved protein MTH18 98.7 1.5E-09 5E-14 89.8 -0.1 26 282-307 75-100 (131)
102 1vsy_5 Proteasome activator BL 98.7 1.4E-06 4.9E-11 95.6 21.4 388 154-548 499-971 (997)
103 1te4_A Conserved protein MTH18 98.6 2.2E-08 7.6E-13 82.6 5.2 116 127-266 14-129 (131)
104 1vsy_5 Proteasome activator BL 98.3 1.3E-05 4.5E-10 88.1 18.2 187 281-471 761-972 (997)
105 3grl_A General vesicular trans 98.2 0.0088 3E-07 61.2 32.6 222 126-347 123-393 (651)
106 4gmo_A Putative uncharacterize 98.0 0.015 5.1E-07 62.2 33.2 185 46-231 33-258 (684)
107 3u0r_A Apoptosis inhibitor 5; 98.0 0.0019 6.4E-08 62.9 22.6 86 139-229 42-127 (507)
108 4gmo_A Putative uncharacterize 98.0 0.012 4.2E-07 62.8 31.4 185 85-271 34-259 (684)
109 3u0r_A Apoptosis inhibitor 5; 97.9 0.0013 4.6E-08 63.9 20.2 128 98-235 40-167 (507)
110 3grl_A General vesicular trans 97.8 0.0041 1.4E-07 63.6 23.5 188 358-545 122-344 (651)
111 3tt9_A Plakophilin-2; cell adh 97.8 0.0003 1E-08 63.3 13.4 147 398-544 9-181 (233)
112 3tt9_A Plakophilin-2; cell adh 97.8 0.0011 3.7E-08 59.6 16.6 188 279-505 7-230 (233)
113 1lsh_A Lipovitellin (LV-1N, LV 97.1 0.044 1.5E-06 61.5 21.6 158 253-430 407-580 (1056)
114 3o2t_A Symplekin; heat repeat, 96.8 0.37 1.3E-05 46.4 23.4 236 297-563 42-320 (386)
115 3gs3_A Symplekin, LD45768P; he 96.8 0.31 1E-05 44.2 22.0 129 373-504 30-173 (257)
116 3o2t_A Symplekin; heat repeat, 96.7 0.45 1.6E-05 45.8 24.9 113 158-272 58-185 (386)
117 3gs3_A Symplekin, LD45768P; he 96.6 0.14 4.8E-06 46.4 17.0 143 142-310 32-174 (257)
118 4atg_A TAF6; transcription, TF 96.1 0.31 1.1E-05 41.8 15.5 140 374-524 24-178 (196)
119 1upk_A MO25 protein; transfera 96.1 0.95 3.2E-05 42.2 19.8 206 354-566 74-313 (341)
120 1lsh_A Lipovitellin (LV-1N, LV 96.0 0.12 4.3E-06 57.9 16.5 130 359-501 392-540 (1056)
121 4atg_A TAF6; transcription, TF 94.1 2.5 8.5E-05 36.2 15.8 140 178-328 23-177 (196)
122 3ldz_A STAM-1, signal transduc 89.6 7 0.00024 31.5 12.2 76 161-236 40-119 (140)
123 1upk_A MO25 protein; transfera 89.0 15 0.00051 34.3 22.7 207 318-526 77-313 (341)
124 3ldz_A STAM-1, signal transduc 88.8 4.9 0.00017 32.4 10.6 70 436-505 42-115 (140)
125 2b6c_A Hypothetical protein EF 88.2 11 0.00038 33.1 13.6 132 205-350 58-190 (220)
126 2b6c_A Hypothetical protein EF 87.5 6.1 0.00021 34.8 11.5 130 128-270 58-188 (220)
127 3g2s_A C-terminal fragment of 87.2 11 0.00037 30.7 12.0 72 436-507 48-129 (149)
128 1x5b_A Signal transducing adap 86.3 8 0.00027 32.1 10.8 74 162-235 51-129 (163)
129 3g2s_A C-terminal fragment of 85.7 13 0.00045 30.2 12.6 75 161-235 46-130 (149)
130 1mhq_A ADP-ribosylation factor 85.5 13 0.00046 30.1 12.1 75 161-235 36-120 (148)
131 3jxy_A Alkylpurine DNA glycosy 84.7 21 0.00071 31.7 14.7 158 205-383 64-223 (232)
132 3jxy_A Alkylpurine DNA glycosy 84.5 19 0.00064 32.0 13.2 159 128-305 64-223 (232)
133 1juq_A ADP-ribosylation factor 82.4 18 0.00062 30.2 11.3 74 162-235 49-132 (171)
134 1juq_A ADP-ribosylation factor 82.0 21 0.00073 29.8 12.4 95 407-507 27-131 (171)
135 1mhq_A ADP-ribosylation factor 81.4 20 0.00069 29.1 13.5 95 407-507 15-119 (148)
136 3zyq_A Hepatocyte growth facto 80.7 19 0.00066 31.7 11.6 75 162-236 44-123 (226)
137 3fga_B Serine/threonine-protei 79.4 47 0.0016 32.1 21.6 207 251-460 94-317 (403)
138 2npp_B PP2A, B subunit, serine 78.8 52 0.0018 32.3 19.0 208 330-539 128-351 (449)
139 3zyq_A Hepatocyte growth facto 76.9 19 0.00065 31.7 10.3 75 278-352 43-122 (226)
140 2fv2_A RCD1 required for cell 75.9 38 0.0013 30.2 11.5 158 10-192 4-174 (268)
141 1elk_A Target of MYB1; superhe 73.6 22 0.00076 29.2 9.2 74 474-547 52-134 (157)
142 1elk_A Target of MYB1; superhe 71.5 41 0.0014 27.6 11.3 74 162-235 52-134 (157)
143 1x5b_A Signal transducing adap 71.1 43 0.0015 27.6 13.4 94 329-428 29-127 (163)
144 2npp_B PP2A, B subunit, serine 70.3 86 0.0029 30.8 21.6 248 251-503 127-398 (449)
145 1dvp_A HRS, hepatocyte growth 69.2 34 0.0012 30.0 10.0 73 162-234 41-118 (220)
146 1vdy_A Hypothetical protein (R 68.7 31 0.001 27.6 8.5 66 404-470 18-83 (140)
147 2fv2_A RCD1 required for cell 65.4 76 0.0026 28.3 12.2 109 239-347 99-223 (268)
148 3fga_B Serine/threonine-protei 62.5 1.1E+02 0.0039 29.4 20.3 249 330-590 95-364 (403)
149 2jak_A Serine/threonine-protei 61.9 1.1E+02 0.0039 29.2 16.0 209 329-539 139-363 (392)
150 1vdy_A Hypothetical protein (R 61.5 34 0.0012 27.3 7.6 36 159-194 45-80 (140)
151 1vsy_4 Proteasome activator BL 60.6 1.8E+02 0.0063 31.1 25.4 263 280-545 339-689 (799)
152 3dad_A FH1/FH2 domain-containi 59.9 1.1E+02 0.0039 28.5 17.8 72 396-467 159-233 (339)
153 3ut4_A CTHE_2751, putative unc 56.5 71 0.0024 25.2 11.7 84 312-409 25-108 (134)
154 3ut4_A CTHE_2751, putative unc 53.7 80 0.0027 24.9 9.1 92 437-541 32-128 (134)
155 2jak_A Serine/threonine-protei 51.4 1.7E+02 0.0059 28.0 16.6 208 251-460 139-362 (392)
156 3dad_A FH1/FH2 domain-containi 50.1 1.6E+02 0.0056 27.4 18.0 67 360-426 162-231 (339)
157 3rru_A TOM1L1 protein; structu 47.0 1.1E+02 0.0039 24.7 9.7 75 162-236 52-135 (152)
158 1dvp_A HRS, hepatocyte growth 45.1 1.5E+02 0.0053 25.7 11.7 75 201-275 41-120 (220)
159 1t06_A Hypothetical protein; s 44.0 83 0.0028 27.8 8.2 68 321-388 110-181 (235)
160 3vld_A DNA mismatch repair pro 40.4 2.8E+02 0.0097 27.4 13.3 141 396-545 72-227 (500)
161 1t06_A Hypothetical protein; s 38.8 2E+02 0.0069 25.2 12.8 69 203-271 109-181 (235)
162 1sz9_A PCF11 protein; RNA poly 35.8 1.7E+02 0.0057 23.4 8.8 70 280-349 43-115 (144)
163 1vsy_4 Proteasome activator BL 30.2 5.4E+02 0.018 27.6 25.0 113 199-311 336-457 (799)
164 3bwt_A Protein PUF4; pumilio, 28.7 3.6E+02 0.012 25.0 13.0 9 519-527 275-283 (333)
165 1sz9_A PCF11 protein; RNA poly 26.3 2.5E+02 0.0085 22.4 10.2 69 396-464 42-113 (144)
166 3s4w_B Protein FACD2, fanconi 24.5 8.3E+02 0.028 27.9 23.1 341 149-507 162-552 (1323)
167 3rru_A TOM1L1 protein; structu 24.3 2.8E+02 0.0096 22.3 10.4 95 407-507 30-133 (152)
168 3k49_A MRNA-binding protein PU 23.9 3E+02 0.01 26.1 9.0 13 320-332 137-149 (369)
169 4flb_A Regulation of nuclear P 21.8 2.8E+02 0.0097 21.5 8.3 127 429-566 1-131 (132)
170 3vld_A DNA mismatch repair pro 20.3 6.4E+02 0.022 25.0 18.4 185 162-350 30-227 (500)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=3.1e-61 Score=517.25 Aligned_cols=579 Identities=58% Similarity=0.929 Sum_probs=541.3
Q ss_pred CCCCCcccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcc
Q 006898 3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE 82 (626)
Q Consensus 3 ~~~~~~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~ 82 (626)
.+|++.++|..|++.++|+|+..|..|.+.+.+++..+|++...++++|+|.+..+++++||..+++.++.+...++++.
T Consensus 4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~ 83 (588)
T 1b3u_A 4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE 83 (588)
T ss_dssp CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence 45899999999999999999999999999999999999998889999999998778899999999999999998888788
Q ss_pred hhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHH
Q 006898 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT 162 (626)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~ 162 (626)
+.+.+++.+..+.+++++.||..|..++..++..++++...+.++|++..+.+++++..|..++.+++.++.+.+....+
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~ 163 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88999999999998999999999999999999999998888889999999999999999999999999999999988889
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhh
Q 006898 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (626)
Q Consensus 163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 242 (626)
.+++.+..+++|+++.||..++++++.++...+++.+.+.++|.+..+++|+++.||..|+.+++.+++..+++...+.+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999998887777889999999999999999999999999999998887778889
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH----HHHH
Q 006898 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQ 318 (626)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~ 318 (626)
+|.+..+++|++|.||..++.+++.++...|.+.....++|.+..+++|++++||..++.+++.+++.++.+ .+.+
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 999999999999999999999999999988766556789999999999999999999999999999988765 4568
Q ss_pred hhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhH
Q 006898 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (626)
Q Consensus 319 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i 398 (626)
.++|.+..+++|++|.||.+++.+++.++..+|.+...+.++|.+..+++|++++||..++.+++.+...++.+...+.+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 403 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999999999999999999999999999988777889999999999999999999999999999998887777789
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 006898 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (626)
Q Consensus 399 ~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~ 478 (626)
+|.+.++.+|++|++|..++.+++.++..+|...+.+.++|.+...+.|++..||..|+.+++.++..+|+++....++|
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp 483 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 99999999999999999999999999999998877788999999999999999999999999999999998877789999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchH
Q 006898 479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFS 558 (626)
Q Consensus 479 ~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l 558 (626)
.+.++..++++.+|..++.+++.+++.++.+.+.+.++|.+...++|++++||..++++|+.+...+|.....+.+.|.+
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l 563 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 99999999999999999999999999988888889999999999999999999999999999999988876667899999
Q ss_pred HhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898 559 FMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH 591 (626)
Q Consensus 559 ~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~ 591 (626)
. .+.+|+|++||. +|..|++.+.
T Consensus 564 ~-~l~~d~d~~vr~---------~a~~al~~l~ 586 (588)
T 1b3u_A 564 E-KLTQDQDVDVKY---------FAQEALTVLS 586 (588)
T ss_dssp H-HHTTCSSHHHHH---------HHHHHHHHTT
T ss_pred H-HHcCCCchhHHH---------HHHHHHHHhh
Confidence 9 899999999999 9999998764
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=2.9e-46 Score=400.86 Aligned_cols=523 Identities=18% Similarity=0.251 Sum_probs=473.4
Q ss_pred cCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcC
Q 006898 19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV 97 (626)
Q Consensus 19 ~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~ 97 (626)
.+++..+|..+.+.|+.+....|.......++|.+.. ..++++.||..+..+++.+....+.+...+.++|.+..+..+
T Consensus 58 ~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~ 137 (588)
T 1b3u_A 58 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 137 (588)
T ss_dssp CCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTC
T ss_pred cCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcC
Confidence 3778899999999999887777665556778888877 467899999999999999988776555667889999999888
Q ss_pred cchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH-HHHHHHHHHHHhcCCCC
Q 006898 98 EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDM 176 (626)
Q Consensus 98 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~ 176 (626)
+++.+|..|+..++.+....+.. ..+.++|.+..+++|+++.+|..++..++.+....+.+ ..+.++|.+..+++|++
T Consensus 138 ~~~~~R~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~ 216 (588)
T 1b3u_A 138 DWFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 216 (588)
T ss_dssp SSHHHHHHHGGGHHHHTTTSCHH-HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSC
T ss_pred CCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCc
Confidence 89999999999999999887754 45678999999999999999999999999999888764 56789999999999999
Q ss_pred HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHH
Q 006898 177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWR 256 (626)
Q Consensus 177 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~ 256 (626)
+.||..++.+++.++...+++...+.++|.+..+++|++|.+|..++.+++.++...+++.+.+.++|.+..+++|+++.
T Consensus 217 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 296 (588)
T 1b3u_A 217 DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAE 296 (588)
T ss_dssp HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHH
Confidence 99999999999999998887777788999999999999999999999999999998887767788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCC----ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCC
Q 006898 257 VRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 332 (626)
Q Consensus 257 vR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~ 332 (626)
||..++.+++.++...+.+ .....++|.+..+++|+++.||..++.+++.++..+|.+...+.++|.+..+++|++
T Consensus 297 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~ 376 (588)
T 1b3u_A 297 VRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDEC 376 (588)
T ss_dssp HHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCc
Confidence 9999999999999988866 345689999999999999999999999999999999987766889999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChH
Q 006898 333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412 (626)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 412 (626)
+.||.+++.+++.+...++.+...+.++|.+..+++|+++.+|..++.+++.+...+|.+.+.+.++|.+.+.++|+++.
T Consensus 377 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 456 (588)
T 1b3u_A 377 PEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYA 456 (588)
T ss_dssp HHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHH
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHH
Confidence 99999999999999988887777788999999999999999999999999999999988776678999999999999999
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHH
Q 006898 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYR 492 (626)
Q Consensus 413 ~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR 492 (626)
+|..++.+++.++..+|...+.+.++|.+..+..|+++.+|..++.+++.++..+|.+.+...++|.+.+.++|+++.+|
T Consensus 457 Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr 536 (588)
T 1b3u_A 457 IREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVR 536 (588)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHH
Confidence 99999999999999999887778899999999999999999999999999999988877778999999999999999999
Q ss_pred HHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHH
Q 006898 493 MTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (626)
Q Consensus 493 ~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~ 542 (626)
..++.+++.+...++.....+.++|.+..+.+|++++||..|+.+++.+.
T Consensus 537 ~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 537 FNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 99999999999999988777889999999999999999999999998764
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=6.3e-35 Score=325.16 Aligned_cols=567 Identities=18% Similarity=0.138 Sum_probs=444.6
Q ss_pred HHhcCccHHHHHHHHhhHHHHHHh----hChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHH
Q 006898 16 DELKNDDIQLRLNSIRRLSTIARA----LGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (626)
Q Consensus 16 ~~l~s~d~~~r~~a~~~l~~i~~~----~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~ 90 (626)
..+.+.+..+|..|...|.+.... +++ ..+..+.+.+.+ +.++++.||..++.+++.++... .+..|+.+++.
T Consensus 55 ~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~-~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~ 132 (852)
T 4fdd_A 55 TKLKSEDEPTRSLSGLILKNNVKAHFQNFPN-GVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG-ELQNWPDLLPK 132 (852)
T ss_dssp HTCTTSCHHHHHHHHHHHHHHTTTSGGGCCH-HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHHH
T ss_pred hccCCCChHHHHHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-CccccHHHHHH
Confidence 333566677777777666655321 222 223344444444 45788899999999999998764 35678999999
Q ss_pred HhhhhcCcchHHHHHHHHHHHHHHhhcChhhH-------HHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH---H
Q 006898 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDL-------VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---L 160 (626)
Q Consensus 91 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~-------~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~ 160 (626)
+...++++++.+|+.+..++..+++..++... ...++|.+.+++++++..+|..|+..+..+....+.. .
T Consensus 133 L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~ 212 (852)
T 4fdd_A 133 LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH 212 (852)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999999999999999998876421 3457788888888889999999999999888766543 3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc---
Q 006898 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--- 235 (626)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--- 235 (626)
...+++.+...++|+++.||+.++.+|+.+++..+. ..+.+.+++.+...++|.++.||..|++.+..+++....
T Consensus 213 ~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~ 292 (852)
T 4fdd_A 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDV 292 (852)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHH
Confidence 467888888999999999999999999999987654 234556889999999999999999999999998864221
Q ss_pred -hhhhhhhHHHHHHhc-----------CC-----------CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC
Q 006898 236 -QDCVAHILPVIVNFS-----------QD-----------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN 292 (626)
Q Consensus 236 -~~~~~~i~~~l~~~~-----------~d-----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 292 (626)
..+...++|.+...+ .| .+|.+|.+++.+++.++...|.. ....++|.+...++++
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~ 371 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHH 371 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCC
Confidence 224456777776654 34 56889999999999999998843 3457889999999999
Q ss_pred hHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhh
Q 006898 293 EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLL 367 (626)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l 367 (626)
++.+|.+|+.+++.+++..+.. .+.+.++|.+..+++|+++.||.+++.+++.++...+. ..+...+++.+...+
T Consensus 372 ~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L 451 (852)
T 4fdd_A 372 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI 451 (852)
T ss_dssp SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999999998765432 34577889999999999999999999999999987653 335667889999999
Q ss_pred cCCCHHHHHHHHHhhHHHHhhhchhh--HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh----HHHHHHHHH
Q 006898 368 KDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALC 441 (626)
Q Consensus 368 ~d~~~~vr~~a~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~p~l 441 (626)
.|.++.||..|+.+++.+++..+.+. +...+++.+...+++.+......++++++.++...|+.. +.+.++|.+
T Consensus 452 ~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l 531 (852)
T 4fdd_A 452 LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 531 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 99999999999999999998776542 346788888888887777777778899999988766443 566788887
Q ss_pred HH---HhcCCchHHHHHHHHHHHHHHHHhChHHH--hhhhHHHHHhhh-----------------cCCChHHHHHHHHHH
Q 006898 442 MQ---WLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMI-----------------NNPHYLYRMTILRAI 499 (626)
Q Consensus 442 ~~---~l~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~il~~l~~~l-----------------~~~~~~vR~~a~~~l 499 (626)
.. .+.|.+..+| .+.++++.++..+|.... ...+++.+.+.+ ..++..+|..++.++
T Consensus 532 ~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l 610 (852)
T 4fdd_A 532 IQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL 610 (852)
T ss_dssp HHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHH
T ss_pred HHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHH
Confidence 74 5677788886 789999999999887532 244444433332 123677999999999
Q ss_pred HHhccccChHH--h--hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCcccccc
Q 006898 500 SLLAPVMGSEI--T--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGFI 573 (626)
Q Consensus 500 ~~i~~~~~~~~--~--~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~~ 573 (626)
+.+++.++.+. + .+.+++.+..++.|+++.||..+..+++.+...++.. .+.+.++|.+. +.+++.+..+|.
T Consensus 611 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~-~~l~~~~~~v~~- 688 (852)
T 4fdd_A 611 SGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG-TNLNPEFISVCN- 688 (852)
T ss_dssp HHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH-HTCCTTSHHHHH-
T ss_pred HHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHcCccchHHHH-
Confidence 99999887553 2 2678999999999999999999999999999888764 45567888888 778888889999
Q ss_pred cccCchhHHHHHHHHHHHHHhhc
Q 006898 574 FAAFPLVLFSCLALNYCHRWWRK 596 (626)
Q Consensus 574 ~~~~~~~~~a~~al~~~~~~~~~ 596 (626)
.|.++++.+....+.
T Consensus 689 --------~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 689 --------NATWAIGEISIQMGI 703 (852)
T ss_dssp --------HHHHHHHHHHHHHGG
T ss_pred --------HHHHHHHHHHHHhhH
Confidence 999999988766554
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.9e-34 Score=319.80 Aligned_cols=571 Identities=16% Similarity=0.112 Sum_probs=445.2
Q ss_pred cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhh-------hhhhcccccc-ccCCchHHHHHHHHHHhccccccCCc
Q 006898 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT-------RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV 81 (626)
Q Consensus 10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~-------~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~ 81 (626)
-++.|++.+.++++..|..++.++..+....++... .+.++|.+.+ +.+++++||..+..+++.++...+..
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence 467888899999999999999999999887765422 3456777766 56789999999999999887643321
Q ss_pred --chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC
Q 006898 82 --EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (626)
Q Consensus 82 --~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~ 157 (626)
...+.+++.+..+.+|+++.+|..|+.++..+++..+.. ...+.+++.+.....++++.+|..++..+..+++...
T Consensus 209 ~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~ 288 (852)
T 4fdd_A 209 LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI 288 (852)
T ss_dssp HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh
Confidence 234567777777888999999999999999999876542 1223477888888888888999999999988876532
Q ss_pred -----hHHHHHHHHHHHHhc-----------CC-----------CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHh
Q 006898 158 -----DILKTELRSIYTQLC-----------QD-----------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL 210 (626)
Q Consensus 158 -----~~~~~~l~~~l~~l~-----------~d-----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l 210 (626)
..+...+++.+...+ +| .+|.+|+.++.+++.++...++ ...+.++|.+...
T Consensus 289 ~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~ 367 (852)
T 4fdd_A 289 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKEL 367 (852)
T ss_dssp HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 124567788887765 34 5678999999999999998874 5667899999999
Q ss_pred hcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHH
Q 006898 211 TQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAY 285 (626)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l 285 (626)
++|++|.+|..|+.+++.+++..++ ..+.+.++|.+...++|+++.||..++.+++.++...+.. .....+++.+
T Consensus 368 l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L 447 (852)
T 4fdd_A 368 LFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL 447 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999999999999999987765 3466788999999999999999999999999999876532 3345788999
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH----HHHHHhH
Q 006898 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQL 359 (626)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l 359 (626)
...++|.++.||..|+.+++.+++..+.. .+.+.+++.+...+++.+......++++++.++...|. ..+.+.+
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l 527 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQML 527 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHH
Confidence 99999999999999999999999877654 34577778777777766777777778888888766553 3467788
Q ss_pred HHHHH---HhhcCCCHHHHHHHHHhhHHHHhhhchhhH--HhhHHHHHHHHhc-----------------CCChHHHHHH
Q 006898 360 LPIFL---SLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE-----------------DRHWRVRLAI 417 (626)
Q Consensus 360 ~~~l~---~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~--~~~i~~~l~~~~~-----------------~~~~~~r~~~ 417 (626)
+|.+. ..+.|.++.++ .++++++.++..+|.... ...+++.+.+.++ .++..+|..+
T Consensus 528 ~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 606 (852)
T 4fdd_A 528 MPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA 606 (852)
T ss_dssp HHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred HHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHH
Confidence 88887 45677778886 789999999998887532 2444554433321 2356789999
Q ss_pred HHHHHHHHHhhChhhHH----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCCChHH
Q 006898 418 IEYIPLLASQLGVGFFD----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLY 491 (626)
Q Consensus 418 ~~~l~~l~~~~~~~~~~----~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~~~v 491 (626)
+..++.+++.+|..... +.+++.+..++.|+.+.||+.+..+++.++..++... ....++|.+.+.++++++.+
T Consensus 607 l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v 686 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 686 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHH
T ss_pred HHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHH
Confidence 99999999999865421 4579999999999999999999999999999887653 23678999999898889999
Q ss_pred HHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCC--chHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhc-c
Q 006898 492 RMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYL-N 564 (626)
Q Consensus 492 R~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~-~ 564 (626)
|..+++++|.++...+.+ .+...+++.|...+++++ ..++.+++.++|++....+.. ++.+.+++.+. +.+ .
T Consensus 687 ~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~-~~l~~ 765 (852)
T 4fdd_A 687 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC-TSLRN 765 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHH-HHhcc
Confidence 999999999999887653 467789999999888764 479999999999999885442 44556666666 444 3
Q ss_pred CCCcccccccccCchhHHHHHHHHHHHH
Q 006898 565 VNNFNVGFIFAAFPLVLFSCLALNYCHR 592 (626)
Q Consensus 565 d~d~~vr~~~~~~~~~~~a~~al~~~~~ 592 (626)
-.|.+-|. .|..++..+-.
T Consensus 766 ~~d~~e~~---------~a~~~l~~li~ 784 (852)
T 4fdd_A 766 IRDNEEKD---------SAFRGICTMIS 784 (852)
T ss_dssp SCSSHHHH---------HHHHHHHHHHH
T ss_pred ccccHHHH---------HHHHHHHHHHH
Confidence 35555566 55555555533
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.1e-34 Score=335.79 Aligned_cols=570 Identities=13% Similarity=0.165 Sum_probs=447.4
Q ss_pred cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCc-------
Q 006898 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV------- 81 (626)
Q Consensus 10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~------- 81 (626)
-+..+++.+.++++.+|..|..+++.++...++ ...+.+++.+.. +.++++.+|.+++.+++.++..++..
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~ 127 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 127 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchH
Confidence 356788889999999999999999999888775 456778887777 67888999999999999998876643
Q ss_pred -chhhcchHHHhhhhc-CcchHHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC
Q 006898 82 -EHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (626)
Q Consensus 82 -~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~ 157 (626)
.+++.++|.+...+. ++++.+|..|+.++..+++..++. ...+.+++.+...+.+++..+|..++.+++.++...+
T Consensus 128 ~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 268899999888887 478899999999999998765541 1235577777777788888999999999999998887
Q ss_pred hHHHHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccC
Q 006898 158 DILKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (626)
Q Consensus 158 ~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 234 (626)
+...+.+++.+...+.+ .++.+|..++++++.++...+.. .+.+.++|.+...++|+++++|..++.+++.+++.++
T Consensus 208 ~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 208 NIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp ---CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 65555556666554433 33578999999999999987752 3456799999999999999999999999999999887
Q ss_pred ch--hhhhhhHHHHHHhcC-------------------------------------CCCHHHHHHHHHHHHHHHHHhCC-
Q 006898 235 PQ--DCVAHILPVIVNFSQ-------------------------------------DKSWRVRYMVANQLYELCEAVGP- 274 (626)
Q Consensus 235 ~~--~~~~~i~~~l~~~~~-------------------------------------d~~~~vR~~a~~~l~~l~~~~~~- 274 (626)
.+ .+.+.++|.+...+. |..|.+|.+++.+++.++...+.
T Consensus 288 ~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~ 367 (1230)
T 1u6g_C 288 KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM 367 (1230)
T ss_dssp CCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhH
Confidence 63 466777777654331 23578999999999999886553
Q ss_pred -CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh---------------------HHHHHhhHHHHHHhccCCC
Q 006898 275 -EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---------------------ELAIQHILPCVKELSSDSS 332 (626)
Q Consensus 275 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~l~~~l~~l~~d~~ 332 (626)
..+...++|.+...+.|.+++||..++.++..+....+. ..+.+.++|.+.+.++|++
T Consensus 368 ~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~ 447 (1230)
T 1u6g_C 368 LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS 447 (1230)
T ss_dssp HHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC
Confidence 233457889888889999999999999999998876542 2234567777777799999
Q ss_pred HHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCH--HHHHHHHHhhHHHHhhhchhh---HHhhHHHHHHHH
Q 006898 333 QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVEL 405 (626)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~L~~~~~~~~~~~---~~~~i~~~l~~~ 405 (626)
|.+|.+++.+++.+....+. ..+.+.++|.+...++|+.+ .+|..++..+..+....+++. +.+.++|.+.+.
T Consensus 448 ~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~ 527 (1230)
T 1u6g_C 448 VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVAC 527 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHH
Confidence 99999999999998876543 23567899999999999864 999999999999988777663 446789999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHhhCh---------hhHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHHhChHHH--
Q 006898 406 AEDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEWA-- 472 (626)
Q Consensus 406 ~~~~~~~~r~~~~~~l~~l~~~~~~---------~~~~~~l~p~l~~~l--~d~~~~VR~~a~~~l~~l~~~~~~~~~-- 472 (626)
++|++|++|..++..+..+++.++. ..+.+.++|.+...+ .|.+..||..|..+++.++...|..+.
T Consensus 528 l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~ 607 (1230)
T 1u6g_C 528 VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 607 (1230)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTH
T ss_pred HcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhh
Confidence 9999999999999999999988876 245678999999988 888999999999999999999887632
Q ss_pred hhhhHHHHHhhhcCCChHHHHHHHHHHHHhcccc---ChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccch
Q 006898 473 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 549 (626)
Q Consensus 473 ~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~---~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~ 549 (626)
...+++.+.+.+.+ ...|..++.+++.++... +...+...++|.+...+.|.+..+|.+++.+++.+....+...
T Consensus 608 ~~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~ 685 (1230)
T 1u6g_C 608 LPNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSL 685 (1230)
T ss_dssp HHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccC
Confidence 25566666665554 358999999999988643 2356788999999999999999999999999999999887543
Q ss_pred hhhcccchHHh--hhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898 550 STFSVSPFSFM--LYLNVNNFNVGFIFAAFPLVLFSCLALNYCH 591 (626)
Q Consensus 550 ~~~~i~~~l~~--~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~ 591 (626)
..+.+.+.+.. .+.+|.|.++.. .+..++..+.
T Consensus 686 ~~~~v~~~l~~ll~ll~~~D~~~~~---------~~~~~L~~l~ 720 (1230)
T 1u6g_C 686 TAAMIDAVLDELPPLISESDMHVSQ---------MAISFLTTLA 720 (1230)
T ss_dssp CHHHHHHHHTTCGGGSCTTCHHHHH---------HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhcCcchHHHHH---------HHHHHHHHHH
Confidence 33344444431 345677877776 6666665553
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.6e-33 Score=315.88 Aligned_cols=575 Identities=14% Similarity=0.141 Sum_probs=454.0
Q ss_pred HHHHHHHhcCc-cHHHHHHHHhhHHHHHHhhChH-----hhhhhhcccccc-ccCC--chHHHHHHHHHHhccccccCCc
Q 006898 11 IAVLIDELKND-DIQLRLNSIRRLSTIARALGEE-----RTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGV 81 (626)
Q Consensus 11 i~~l~~~l~s~-d~~~r~~a~~~l~~i~~~~~~~-----~~~~~l~~~l~~-~~~~--~~~vr~~~~~~l~~~~~~~~~~ 81 (626)
++.|++.+.++ |+..|..++..+..+....+++ ...+.+++.+.. +.++ +++||.++.++++.++.+++..
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 215 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888 9999999999999998876643 244566676665 4555 7899999999999876654321
Q ss_pred ----chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh--hHHH-hHHHHHHHHhcCCccchhHHHhhHhHHhcC
Q 006898 82 ----EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVD-WYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (626)
Q Consensus 82 ----~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~-~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~ 154 (626)
..++.+++.+.....++++.+|..+++++..+++..+.. .... .+++.+.....+.+..+|..++..+..++.
T Consensus 216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 295 (861)
T 2bpt_A 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 124567888888888899999999999999999877642 1222 566777777788888999999988877655
Q ss_pred CC-----------------C---hHHHHHHHHHHHHhcCC-------CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHH
Q 006898 155 SA-----------------P---DILKTELRSIYTQLCQD-------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207 (626)
Q Consensus 155 ~~-----------------~---~~~~~~l~~~l~~l~~d-------~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l 207 (626)
.. + ......+++.+...+.+ +++.+|..+..+++.++...+. ...+.+++.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l 374 (861)
T 2bpt_A 296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFV 374 (861)
T ss_dssp HHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHH
T ss_pred HHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHH
Confidence 32 1 12346788888776653 4589999999999999998874 5567889999
Q ss_pred HHhhcCCchhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC----ccccc
Q 006898 208 EDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMD 280 (626)
Q Consensus 208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ 280 (626)
...+++++|.+|..++.+++.+++..++ ..+.+.++|.+...+.|+++.||..++.+++.++...+.. .....
T Consensus 375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 9999999999999999999999987763 2345678888899999999999999999999999887642 34567
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh---H---HHHHhhHHHHHHhcc--CCCHHHHHHHHHHHHhhhhhhcH
Q 006898 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---E---LAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGK 352 (626)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~---~~~~~l~~~l~~l~~--d~~~~vr~~~~~~l~~l~~~~~~ 352 (626)
++|.+...++|+ +.+|..++.++..+++.++. . .+.+.+++.+...+. |.++.+|.+++++++.++...+.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 889999999887 89999999999999987751 1 344677788877776 44589999999999999988775
Q ss_pred H--HHHHhHHHHHHHhhcC---------------CCHHHHHHHHHhhHHHHhhhchh--hHHhhHHHHHHHHhcCCCh-H
Q 006898 353 D--ATIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHW-R 412 (626)
Q Consensus 353 ~--~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~L~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~-~ 412 (626)
+ .+...++|.+...+.+ ....+|..++.+++.++...|.+ .+.+.+++.+.+.+++.++ .
T Consensus 534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 613 (861)
T 2bpt_A 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF 613 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence 4 2455677777766652 24678899999999999888764 2346788888888888877 8
Q ss_pred HHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCCC
Q 006898 413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH 488 (626)
Q Consensus 413 ~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~ 488 (626)
+|..++.+++.++...|..+ +.+.++|.+...+.++++.+|..++.+++.++...|... ....++|.+.+.+.+++
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 693 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN 693 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence 99999999999999887654 357799999999999999999999999999999888642 34678888888888765
Q ss_pred --hHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCC-----------chHHHHHHHHHHHHHhhhcc-----c
Q 006898 489 --YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQ-----S 548 (626)
Q Consensus 489 --~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~-----------~~vR~~a~~~l~~i~~~~~~-----~ 548 (626)
+.+|..++.+++.++..++.. .+.+.++|.+...+.... ..+|..+++++..+...++. .
T Consensus 694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~ 773 (861)
T 2bpt_A 694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF 773 (861)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG
T ss_pred ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 889999999999999887765 356788998888776432 46899999999999988773 2
Q ss_pred hhhhcccchHHhhhccCC----CcccccccccCchhHHHHHHHHHHHHHh-hcC
Q 006898 549 VSTFSVSPFSFMLYLNVN----NFNVGFIFAAFPLVLFSCLALNYCHRWW-RKQ 597 (626)
Q Consensus 549 ~~~~~i~~~l~~~l~~d~----d~~vr~~~~~~~~~~~a~~al~~~~~~~-~~~ 597 (626)
.+.+.+++.+. ....|. +..+|. .|..+++.+...+ +..
T Consensus 774 ~~~~~i~~~l~-~~~~d~~~~~~~~vr~---------~a~~~l~~l~~~~~g~~ 817 (861)
T 2bpt_A 774 PYVGTIFQFIA-QVAEDPQLYSEDATSR---------AAVGLIGDIAAMFPDGS 817 (861)
T ss_dssp GGHHHHHHHHH-HHHHCHHHHTSHHHHH---------HHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHH-HHHcCcccCCcHHHHH---------HHHHHHHHHHHHcCCch
Confidence 34456666666 666674 889999 9999999998777 443
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=7e-34 Score=329.04 Aligned_cols=574 Identities=12% Similarity=0.142 Sum_probs=455.2
Q ss_pred cccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhC---hHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcch
Q 006898 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (626)
Q Consensus 8 ~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~---~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~ 83 (626)
-+.+..+++++.|+|.+.|.+|...|.+....-. .+...+.+++.+.+ +.|+++++|.+++.+++.++..++. ..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence 3678999999999999999999999887643211 11234466666655 6688999999999999999887653 56
Q ss_pred hhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh--------hHHHhHHHHHHHHhcC-CccchhHHHhhHhHHhcC
Q 006898 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--------DLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYP 154 (626)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--------~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~ 154 (626)
.+.+++.+...+.|+++.+|..|..+++.++..+++. ...+.++|.+...+.+ +++.+|..++..++.++.
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 6778888777778888899999999999999988865 2567789999888874 778899999999998875
Q ss_pred CCCh---HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhh
Q 006898 155 SAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALG 230 (626)
Q Consensus 155 ~~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~ 230 (626)
..++ .+.+.+++.+...+.|+++.||..++.+++.++...+++. .+.+++.+...+.+. ++.+|..++++++.++
T Consensus 164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 4433 3678899999999999999999999999999998776543 455667666665544 3578889999999999
Q ss_pred cccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcC----------------
Q 006898 231 KLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLR---------------- 290 (626)
Q Consensus 231 ~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~---------------- 290 (626)
...+. ..+.+.++|.+...+.|.++.+|..++.+++.++..++.+. +...++|.++..+.
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~ 322 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA 322 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 88776 34567899999999999999999999999999999887653 33456666665553
Q ss_pred ---------------------CChHHHHHHHHHhHHHHHHhhCh--HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhh
Q 006898 291 ---------------------DNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (626)
Q Consensus 291 ---------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~ 347 (626)
|..+.+|.+|+.++..++...+. ..+.+.++|.+...+.|+++.||.+++.++..+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 402 (1230)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred ccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 11256899999999999986653 3556788899888889999999999999988887
Q ss_pred hhhcH---------------------HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh--hHHhhHHHHHHH
Q 006898 348 PLLGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVE 404 (626)
Q Consensus 348 ~~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~--~~~~~i~~~l~~ 404 (626)
...+. ..+.+.++|.+...++|+++.+|.+++..++.+....+.. .+.+.++|.+.+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~ 482 (1230)
T 1u6g_C 403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF 482 (1230)
T ss_dssp HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred HHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHH
Confidence 65532 2344567788888899999999999999999998765321 234678999999
Q ss_pred HhcCCCh--HHHHHHHHHHHHHHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh-------H--
Q 006898 405 LAEDRHW--RVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-------E-- 470 (626)
Q Consensus 405 ~~~~~~~--~~r~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-------~-- 470 (626)
.++|+++ .+|..++..+..+....+++. +.+.++|.+...+.|+++.||..++.+++.++..++. .
T Consensus 483 ~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 483 SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred HHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 9999876 899999999999988777764 3456889999999999999999999999999998876 1
Q ss_pred HHhhhhHHHHHhhh--cCCChHHHHHHHHHHHHhccccChHH--hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhc
Q 006898 471 WAMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (626)
Q Consensus 471 ~~~~~il~~l~~~l--~~~~~~vR~~a~~~l~~i~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 546 (626)
.+.+.++|.+...+ .|+++.+|..++.+++.++...|... +.+.+++.+...+.+. ..|..++++++.+.....
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~ 640 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPL 640 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCcc
Confidence 24578899988888 77889999999999999998877542 4577788887777653 589999999999876432
Q ss_pred c---chhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhh
Q 006898 547 Q---SVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWR 595 (626)
Q Consensus 547 ~---~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~ 595 (626)
. ..+.+.++|.+. ..+.|++..+|. ++..+++.+....+
T Consensus 641 ~~~~~~~~~~i~~~L~-~~l~~~~~~~r~---------~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 641 KIDLRPVLGEGVPILA-SFLRKNQRALKL---------GTLSALDILIKNYS 682 (1230)
T ss_dssp CCCCHHHHHHHHHHHH-HHTTSCCHHHHH---------HHHHHHHHHHHHCC
T ss_pred ccchHHHHHHHHHHHH-HHHHhCCHHHHH---------HHHHHHHHHHhccc
Confidence 2 356688999999 899999999999 99999988865543
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=4.5e-32 Score=304.03 Aligned_cols=570 Identities=11% Similarity=0.069 Sum_probs=439.6
Q ss_pred HHHHhcC--ccHHHHHHHHhhHHHHH---------------Hh-hChHhhhhhhcccccc-ccCCchHHHHHHHHHHhcc
Q 006898 14 LIDELKN--DDIQLRLNSIRRLSTIA---------------RA-LGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVF 74 (626)
Q Consensus 14 l~~~l~s--~d~~~r~~a~~~l~~i~---------------~~-~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~ 74 (626)
|++-+.+ .+..+|..|...|.+.. .. +++ ..+..+.+.+.+ +.++++.+|..++.+++.+
T Consensus 44 l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~-~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i 122 (861)
T 2bpt_A 44 SSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSP-EAKNQIKTNALTALVSIEPRIANAAAQLIAAI 122 (861)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCH-HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 3444433 35667777766666542 11 322 233344444444 4567889999999999988
Q ss_pred ccccCCcchhhcchHHHhhhhcCc-chHHHHHHHHHHHHHHhhcChh-----hHHHhHHHHHHHHhcCC--ccchhHHHh
Q 006898 75 IPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMRES-----DLVDWYIPLVKRLAAGE--WFTARVSAC 146 (626)
Q Consensus 75 ~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~i~~~~~~~-----~~~~~l~~~l~~l~~~~--~~~~r~~a~ 146 (626)
+........|+.++|.+...+.++ ++.+|+.++.++..+++.++++ .....+++.+...+.++ +..+|..++
T Consensus 123 ~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al 202 (861)
T 2bpt_A 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAAL 202 (861)
T ss_dssp HHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred HHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 775432236888999988888887 8999999999999999877653 23455777777777776 778999999
Q ss_pred hHhHHhcCCCChH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhh-hHHHHHHHhhcCCchhH
Q 006898 147 GLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKT-DIMSIFEDLTQDDQDSV 218 (626)
Q Consensus 147 ~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~-~ll~~l~~l~~d~~~~v 218 (626)
.+++.+...+... .++.+++.+...+.++++.+|..++++++.++...+.. .+.. .+++.+...+.|.++.+
T Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v 282 (861)
T 2bpt_A 203 NALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKV 282 (861)
T ss_dssp HHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9998876554322 34568888888889999999999999999999887642 2334 67788888889999999
Q ss_pred HHHHHHHHHHhhcccCc-------------------hhhhhhhHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHh
Q 006898 219 RLLAVEGCAALGKLLEP-------------------QDCVAHILPVIVNFSQ-------DKSWRVRYMVANQLYELCEAV 272 (626)
Q Consensus 219 r~~a~~~l~~l~~~~~~-------------------~~~~~~i~~~l~~~~~-------d~~~~vR~~a~~~l~~l~~~~ 272 (626)
|..+++.+..+++.... ..+...++|.+...+. |.+|.+|..+..+++.++..+
T Consensus 283 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~ 362 (861)
T 2bpt_A 283 ASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC 362 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHc
Confidence 99999999988875310 1233567777766554 346899999999999999988
Q ss_pred CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh
Q 006898 273 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (626)
Q Consensus 273 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (626)
|... ...+++.+.+.+++.+|.+|.+++.+++.+++..+++ .+.+.++|.+...+.|+++.||.+++.+++.++..
T Consensus 363 ~~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 363 GNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp GGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cHhH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 8433 4578888888999999999999999999998766533 23467888888999999999999999999999987
Q ss_pred hcH----HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---h---hHHhhHHHHHHHHhcC--CChHHHHHH
Q 006898 350 LGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D---LLSQSLLPAIVELAED--RHWRVRLAI 417 (626)
Q Consensus 350 ~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~---~~~~~i~~~l~~~~~~--~~~~~r~~~ 417 (626)
++. ..+.+.++|.+...+.|+ +.||..++.++..+++..+. + .+.+.+++.+.+.+++ .++.+|..+
T Consensus 442 ~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a 520 (861)
T 2bpt_A 442 VAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASA 520 (861)
T ss_dssp HGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHH
Confidence 764 345678899999999887 99999999999999887651 1 2346778888888874 458999999
Q ss_pred HHHHHHHHHhhChhh--HHHHHHHHHHHHhcC---------------CchHHHHHHHHHHHHHHHHhChHH--HhhhhHH
Q 006898 418 IEYIPLLASQLGVGF--FDDKLGALCMQWLQD---------------KVYSIRDAAANNLKRLAEEFGPEW--AMQHITP 478 (626)
Q Consensus 418 ~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d---------------~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~ 478 (626)
+++++.++...+... +...++|.++..+.+ ....+|..++.+++.++..+|... ....+++
T Consensus 521 ~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~ 600 (861)
T 2bpt_A 521 FSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMG 600 (861)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred HHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999887653 335677777766542 356789999999999999988752 3467888
Q ss_pred HHHhhhcCCCh-HHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhc
Q 006898 479 QVLEMINNPHY-LYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFS 553 (626)
Q Consensus 479 ~l~~~l~~~~~-~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~ 553 (626)
.+.+.+++.+. .+|..++.+++.++...+.. .+.+.++|.+...++++++.+|..++.+++.+....|.. .+.+.
T Consensus 601 ~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 680 (861)
T 2bpt_A 601 LFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDA 680 (861)
T ss_dssp HHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHH
T ss_pred HHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHH
Confidence 88888888877 89999999999998877654 357789999999999999999999999999999888764 44567
Q ss_pred ccchHHhhhccCCC--cccccccccCchhHHHHHHHHHHHHHhhc
Q 006898 554 VSPFSFMLYLNVNN--FNVGFIFAAFPLVLFSCLALNYCHRWWRK 596 (626)
Q Consensus 554 i~~~l~~~l~~d~d--~~vr~~~~~~~~~~~a~~al~~~~~~~~~ 596 (626)
+++.+. ..+.+++ .++|. .+..+++.+....+.
T Consensus 681 l~~~l~-~~l~~~~~~~~vr~---------~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 681 MMNVLA-QMISNPNARRELKP---------AVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHH-HHHHCTTCCTTHHH---------HHHHHHHHHHHHHGG
T ss_pred HHHHHH-HHhCCccccHhhhH---------HHHHHHHHHHHHhhh
Confidence 777777 6666654 88999 888888887665544
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=7.9e-31 Score=294.55 Aligned_cols=574 Identities=13% Similarity=0.139 Sum_probs=423.0
Q ss_pred cHHHHHHHhcCc--cHHHHHHHHhhHHHHHHhhChHh---hhhhhcccccc-ccCC--chHHHHHHHHHHhccccccCCc
Q 006898 10 PIAVLIDELKND--DIQLRLNSIRRLSTIARALGEER---TRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGV 81 (626)
Q Consensus 10 ~i~~l~~~l~s~--d~~~r~~a~~~l~~i~~~~~~~~---~~~~l~~~l~~-~~~~--~~~vr~~~~~~l~~~~~~~~~~ 81 (626)
-++.|++.+.++ ++..|..+++.+..+....+++. ..+.+++.+.+ +.++ ++++|..+.++++.++..++..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888 99999999999999987765432 23455666665 4444 6899999999999887654421
Q ss_pred ----chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh--hHHH-hHHHHHHHHhcCCccchhHHHhhHhHHhcC
Q 006898 82 ----EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVD-WYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (626)
Q Consensus 82 ----~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~-~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~ 154 (626)
...+.+++.+..+..++++.+|..+++++..+++..++. .... .+++.+.....+.++.+|..++..+..+..
T Consensus 209 ~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 111346777777778888999999999999999876642 1223 577777777777788889888877766643
Q ss_pred CC---------------------Ch---HHHHHHHHHHHHhcC-------CCCHHHHHHHHHhHHHHHHhhCccchhhhH
Q 006898 155 SA---------------------PD---ILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDI 203 (626)
Q Consensus 155 ~~---------------------~~---~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 203 (626)
.. .. .....+++.+...+. |.+|.+|+++..+++.++...+. ...+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~ 367 (876)
T 1qgr_A 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHV 367 (876)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHH
T ss_pred HHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHH
Confidence 21 01 133667777777653 45789999999999999998874 556788
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHhhcccCch---hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC----c
Q 006898 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----P 276 (626)
Q Consensus 204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~ 276 (626)
+|.+...++|++|.+|..++.+++.+++..+++ .+.+.++|.+...+.|+++.||..++.+++.++...+.. .
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 899999999999999999999999999887732 356778898889999999999999999999999886542 3
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----------------hHHHHHhhHHHHHHhccCC---CHHHH-
Q 006898 277 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----------------PELAIQHILPCVKELSSDS---SQHVR- 336 (626)
Q Consensus 277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------~~~~~~~l~~~l~~l~~d~---~~~vr- 336 (626)
....+++.+...++|. +.||..++.++..++...+ ...+.+.++|.+...+.+. +..+|
T Consensus 448 ~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~ 526 (876)
T 1qgr_A 448 YLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS 526 (876)
T ss_dssp THHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHH
Confidence 3457888888888886 8899999999999887653 1123456677766655442 23344
Q ss_pred -------------------------------------------------------HHHHHHHHhhhhhhc-HH--HHHHh
Q 006898 337 -------------------------------------------------------SALASVIMGMAPLLG-KD--ATIEQ 358 (626)
Q Consensus 337 -------------------------------------------------------~~~~~~l~~l~~~~~-~~--~~~~~ 358 (626)
..++.+++.++..+| .. .+.+.
T Consensus 527 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 606 (876)
T 1qgr_A 527 SAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV 606 (876)
T ss_dssp HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHH
Confidence 444445555555455 22 12455
Q ss_pred HHHHHHHhhcCCC--HHHHHHHHHhhHHHHhhhchhh--HHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh-
Q 006898 359 LLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF- 432 (626)
Q Consensus 359 l~~~l~~~l~d~~--~~vr~~a~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~- 432 (626)
++|.+...+++.. +.+|..++.+++.+....|... +.+.++|.+...+.+. ++.+|..++..++.++...|...
T Consensus 607 l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 686 (876)
T 1qgr_A 607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII 686 (876)
T ss_dssp HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7777788887664 4789999999999888766542 2356788888888876 89999999999999998887543
Q ss_pred -HHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCCC-----------hHHHHHHH
Q 006898 433 -FDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH-----------YLYRMTIL 496 (626)
Q Consensus 433 -~~~~l~p~l~~~l~d--~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~-----------~~vR~~a~ 496 (626)
+.+.+++.+...+.+ .+..+|..++.+++.++..+|+++ +...++|.+.+.+.++. ..+|..++
T Consensus 687 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~ 766 (876)
T 1qgr_A 687 PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCL 766 (876)
T ss_dssp HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHH
Confidence 346788888888876 457899999999999999888763 24667777777665442 27899999
Q ss_pred HHHHHhccccCh------------HHhhhcHHHHHhhhCCCC--CchHHHHHHHHHHHHHhhhcc-c--hh-hhcccchH
Q 006898 497 RAISLLAPVMGS------------EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ-S--VS-TFSVSPFS 558 (626)
Q Consensus 497 ~~l~~i~~~~~~------------~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~~~~-~--~~-~~~i~~~l 558 (626)
.+++.+++.++. ..+.+.+++.+.....|+ +..||..|+.+|+.+....|. . .+ .+.+++.+
T Consensus 767 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~l 846 (876)
T 1qgr_A 767 EAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHEL 846 (876)
T ss_dssp HHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHH
Confidence 988877765432 124456667776666777 679999999999999999877 3 22 44566666
Q ss_pred HhhhccCCCcccccccccCchhHHHHHHHHHHHHHh
Q 006898 559 FMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWW 594 (626)
Q Consensus 559 ~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~ 594 (626)
....+.|++.++|. .|..|++.+.+..
T Consensus 847 l~~~l~~~~~~~r~---------~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 847 LTEGRRSKTNKAKT---------LARWATKELRKLK 873 (876)
T ss_dssp HHHHHHCSCHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHhhcCCHhHHH---------HHHHHHHHHHHhh
Confidence 61378899999999 9999999987653
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=2.8e-31 Score=298.14 Aligned_cols=571 Identities=16% Similarity=0.155 Sum_probs=432.0
Q ss_pred HHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCC--chHHHHHHHHHHhccccccCC---cchhhc
Q 006898 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGG---VEHAHV 86 (626)
Q Consensus 13 ~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~--~~~vr~~~~~~l~~~~~~~~~---~~~~~~ 86 (626)
.+++.+.++++.. ..+...++.++...++...+++++|.+.+ +.++ ++.+|..+..+++.+....++ ..+.+.
T Consensus 94 ~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 172 (876)
T 1qgr_A 94 YVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE 172 (876)
T ss_dssp HHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred HHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHH
Confidence 3778888888888 88999999998887666678899999988 5566 889999999999988775432 235566
Q ss_pred chHHHhhhhcCc--chHHHHHHHHHHHHHHhhcChh----hHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCCh--
Q 006898 87 LLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-- 158 (626)
Q Consensus 87 l~~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~-- 158 (626)
+++.+...+.++ +..+|..|++++..+...++.. .....+++.+.....++++.+|..++.++..+....++
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 252 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM 252 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 777777777776 6889999999999988765432 12235788888888888889999999999988765554
Q ss_pred -HHHH-HHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhC------------------c-cc----hhhhHHHHHHHhhc-
Q 006898 159 -ILKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE------------------P-AH----LKTDIMSIFEDLTQ- 212 (626)
Q Consensus 159 -~~~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~------------------~-~~----~~~~ll~~l~~l~~- 212 (626)
.+.. .+++.+.....+.+..||..+++.+..+++... . .. ....++|.+...+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~ 332 (876)
T 1qgr_A 253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 332 (876)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc
Confidence 2344 788888888889999999999999988876531 0 01 22567777777664
Q ss_pred ------CCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHH
Q 006898 213 ------DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVP 283 (626)
Q Consensus 213 ------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~ 283 (626)
|+++.+|..+..++..++...+. ...+.++|.+...+.|++|.+|..++.+++.++...+.+ .....++|
T Consensus 333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~ 411 (876)
T 1qgr_A 333 QDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 411 (876)
T ss_dssp CCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34689999999999999998874 456788999999999999999999999999987654411 12346889
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHHhhCh----HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc--------
Q 006898 284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-------- 351 (626)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~-------- 351 (626)
.+...++|+++.||..|+.+++.+++..+. ..+.+.+++.+...+.|. +.||..++.++..++..++
T Consensus 412 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccc
Confidence 999999999999999999999999998654 234577888888888875 9999999999999887654
Q ss_pred --------HHHHHHhHHHHHHHhhcCC---CHHHHHHHHH----------------------------------------
Q 006898 352 --------KDATIEQLLPIFLSLLKDE---FPDVRLNIIS---------------------------------------- 380 (626)
Q Consensus 352 --------~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~---------------------------------------- 380 (626)
-..+.+.++|.+...+.+. +..+|..+++
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 570 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQS 570 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCS
T ss_pred cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 1234567788888777653 2345544444
Q ss_pred ----------------hhHHHHhhhc-hhh--HHhhHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHhhChhh--HHHHH
Q 006898 381 ----------------KLDQVNQVIG-IDL--LSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDDKL 437 (626)
Q Consensus 381 ----------------~L~~~~~~~~-~~~--~~~~i~~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~--~~~~l 437 (626)
+++.++..+| .+. +...++|.+.+.+++.+ +.+|..++.+++.++...+..+ +.+.+
T Consensus 571 ~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 650 (876)
T 1qgr_A 571 TSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF 650 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444444 221 22456777777777654 6899999999999998876543 34678
Q ss_pred HHHHHHHhcCC-chHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChHH--
Q 006898 438 GALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI-- 510 (626)
Q Consensus 438 ~p~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~~-- 510 (626)
+|.+...+.+. ++.||..++.+++.++...|... ....+++.+.+.+.+ .+..+|..++.+++.++..+|.++
T Consensus 651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~ 730 (876)
T 1qgr_A 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK 730 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHH
Confidence 89999999887 89999999999999999887643 246788888888776 467899999999999998777653
Q ss_pred hhhcHHHHHhhhCCCCC-----------chHHHHHHHHHHHHHhhhccc------------hhhhcccchHHhhhccCC-
Q 006898 511 TCSRLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQS------------VSTFSVSPFSFMLYLNVN- 566 (626)
Q Consensus 511 ~~~~~l~~l~~~l~d~~-----------~~vR~~a~~~l~~i~~~~~~~------------~~~~~i~~~l~~~l~~d~- 566 (626)
+.+.++|.+...++++. ..+|..+.+++..+...++.. .+.+.+++.+. .+..|+
T Consensus 731 ~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~ 809 (876)
T 1qgr_A 731 YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFID-HIAGDED 809 (876)
T ss_dssp GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHH-HHHTCSC
T ss_pred HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 56788888888776553 279999999999988876641 23345555555 555676
Q ss_pred -CcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898 567 -NFNVGFIFAAFPLVLFSCLALNYCHRWWRK 596 (626)
Q Consensus 567 -d~~vr~~~~~~~~~~~a~~al~~~~~~~~~ 596 (626)
+..+|. .|..+++.+....+.
T Consensus 810 ~~~~vr~---------~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 810 HTDGVVA---------CAAGLIGDLCTAFGK 831 (876)
T ss_dssp CCHHHHH---------HHHHHHHHHHHHHCT
T ss_pred CCHHHHH---------HHHHHHHHHHHHhCc
Confidence 678999 899999988776644
No 11
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.94 E-value=1.1e-23 Score=223.23 Aligned_cols=508 Identities=15% Similarity=0.115 Sum_probs=365.8
Q ss_pred cccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhc
Q 006898 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (626)
Q Consensus 8 ~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~ 86 (626)
-..+..+.+.|+++|...|..+++.+-.+ ..+|.+. +.+.+.+.. +.+++.++|+.+...+..+.+. .++....
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l 86 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKDV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIM 86 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCCC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHT
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCCh--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHH
Confidence 35789999999999999999998888865 4456432 334444444 5678999999988888877652 2444455
Q ss_pred chHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHH-HHHH
Q 006898 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-TELR 165 (626)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~-~~l~ 165 (626)
+.+.+.+-++|+++.+|..|+.+++.+. ...+.+.+.|.+..++.|+++.+|..|+.++..++...++... ..++
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~ 162 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFL 162 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHH
Confidence 5667777788999999999988887764 3345567888888999999999999999999999886655333 4688
Q ss_pred HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc---chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhh
Q 006898 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (626)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 242 (626)
+.+..+++|+++.||.+|+.+|+.++...+.. ......++.+...+.+.++..+...++.+..++.. .......+
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~ 240 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSI 240 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHH
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHH
Confidence 99999999999999999999999988764422 12234455566666777777777777777655422 12235678
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCcc---ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHH
Q 006898 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI 317 (626)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 317 (626)
++.+...+++.++.|+..++.++..+....+ .+.. ...+.+.+..++ ++++++|..++.++..+....+ +.+.
T Consensus 241 l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~ 318 (591)
T 2vgl_B 241 CERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILK 318 (591)
T ss_dssp HHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHH
Confidence 8888888999999999999999988764331 1111 123445555555 4778999999999999987532 2211
Q ss_pred HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhh
Q 006898 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (626)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~ 397 (626)
+. +..+....+|+ +.+|..+++.+..++..-+ .+.+++.+...+.+.+.++|..++.+++.++..++... +.
T Consensus 319 ~~-~~~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~--~~ 390 (591)
T 2vgl_B 319 QE-IKVFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA--ER 390 (591)
T ss_dssp TC-TTTTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH--HH
T ss_pred HH-HHhheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH--HH
Confidence 11 11122222444 9999999999888874322 44677888889999999999999999999998765432 56
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHhChHHHhhhh
Q 006898 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHI 476 (626)
Q Consensus 398 i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i 476 (626)
+++.+.+++.+....++..++..+..+....+.. .+..++.+...+. +..+.+|..+++++|.++..... ...+
T Consensus 391 ~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~ 465 (591)
T 2vgl_B 391 CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADEL 465 (591)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHH
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHH
Confidence 8899999999999899998888888887655432 1234455666665 56788999999999998765532 2456
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCC-CCchHHHHHHHHHHHHH
Q 006898 477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQSLI 542 (626)
Q Consensus 477 l~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~i~ 542 (626)
+..+.+.+.+.+..+|..++.++.++....+.. ..+.+...+.....| .+.+||..|...+.-+.
T Consensus 466 l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 466 LESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp HHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTT
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHC
Confidence 667777777788999999999999998765532 112223333333355 67799999988776653
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.92 E-value=7.9e-23 Score=211.86 Aligned_cols=390 Identities=15% Similarity=0.087 Sum_probs=257.2
Q ss_pred ccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcC-cchHHHHHHHHHHHHHHhhcChhhHHHhHHH
Q 006898 50 IPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDLVDWYIP 128 (626)
Q Consensus 50 ~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~ 128 (626)
...|....++++++|+.+.+.|.++... ..+.++..++.+ +.++ .++.+|+.|...++...+........ .
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~-~~~~~~~~L~~i---l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~-~--- 75 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVE-NLPTFLVELSRV---LANPGNSQVARVAAGLQIKNSLTSKDPDIKA-Q--- 75 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH-H---
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChHHHHHHHHHH---HHcCCCChHHHHHHHHHHHHhccccchHHHH-H---
Confidence 3444456677777777777777764331 012222222222 2222 35677777777776665432111000 0
Q ss_pred HHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHH
Q 006898 129 LVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFE 208 (626)
Q Consensus 129 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 208 (626)
+...+..++++.+..+...++..+.++++.+ ..++.+++.++....+...|+.++|.+.
T Consensus 76 --------------------~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~ 134 (462)
T 1ibr_B 76 --------------------YQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLV 134 (462)
T ss_dssp --------------------HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHH
T ss_pred --------------------HHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 0001233556667778887888888887888 8888889888887655456788889888
Q ss_pred HhhcCC--chhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhC----CCcc
Q 006898 209 DLTQDD--QDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVG----PEPT 277 (626)
Q Consensus 209 ~l~~d~--~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~----~~~~ 277 (626)
..++++ ++.+|..++.+++.+++.... ..+.+.+++.+...+.|+ ++.||..++++++.+....+ ....
T Consensus 135 ~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 214 (462)
T 1ibr_B 135 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE 214 (462)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 888887 888899999999888876532 334566778888888887 78899998888887543221 1111
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHH-hhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc---
Q 006898 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQ-HILPCVKELSSDSSQHVRSALASVIMGMAPLLG--- 351 (626)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--- 351 (626)
...+++.+...+.+.++++|..+++++..++...+.. .+.. .+++.+.....+.++.+|..+++.+..++....
T Consensus 215 ~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~ 294 (462)
T 1ibr_B 215 RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA 294 (462)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 1235677777778888889999998888888765432 2234 667777777788888898888888877765420
Q ss_pred -----------------H---HHHHHhHHHHHHHhhcC-------CCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHH
Q 006898 352 -----------------K---DATIEQLLPIFLSLLKD-------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 404 (626)
Q Consensus 352 -----------------~---~~~~~~l~~~l~~~l~d-------~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~ 404 (626)
. +.+...++|.++..+.+ .++.+|.+|..+|+.++..+|. .....++|.+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~ 373 (462)
T 1ibr_B 295 IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKE 373 (462)
T ss_dssp HHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHH
T ss_pred HhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 0 11235667777776643 2456788888888888777773 334567777777
Q ss_pred HhcCCChHHHHHHHHHHHHHHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh
Q 006898 405 LAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (626)
Q Consensus 405 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~ 469 (626)
.+++++|++|.+++.+++.++....++. ..+.++|.+...+.|+++.||..|+++++.++..+++
T Consensus 374 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 7777888888888888887776544221 2245677777777777777777777777777776654
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.92 E-value=7e-22 Score=204.70 Aligned_cols=382 Identities=14% Similarity=0.109 Sum_probs=287.6
Q ss_pred hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhhcccC--------------
Q 006898 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLE-------------- 234 (626)
Q Consensus 171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~-------------- 234 (626)
...+++..+|+.|-+.|..+.... . +.+.+.+...+.+. ++.+|..|...|.++.+...
T Consensus 9 ~~~s~d~~~r~~Ae~~L~~~~~~~-~----~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l 83 (462)
T 1ibr_B 9 KTVSPDRLELEAAQKFLERAAVEN-L----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (462)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhC-h----HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence 345778899999999998865521 1 22334444444443 67899999999988864321
Q ss_pred chhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhC
Q 006898 235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILN 312 (626)
Q Consensus 235 ~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~ 312 (626)
++.....+...+...+.+++..+ ..++.+++.++...+.......++|.+.+.+.++ ++.+|..++.+++.+++...
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~ 162 (462)
T 1ibr_B 84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID 162 (462)
T ss_dssp CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC
Confidence 12223445566666777777778 8899999999987644322468999999999888 89999999999999998663
Q ss_pred hH---HHHHhhHHHHHHhccCC--CHHHHHHHHHHHHhhhhhhcHH----HHHHhHHHHHHHhhcCCCHHHHHHHHHhhH
Q 006898 313 PE---LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (626)
Q Consensus 313 ~~---~~~~~l~~~l~~l~~d~--~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~ 383 (626)
.+ .+.+.+++.+.+.+++. ++.||..++++++.+...+... .+.+.+++.+...+.+.++.+|..++.++.
T Consensus 163 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~ 242 (462)
T 1ibr_B 163 PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242 (462)
T ss_dssp GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 32 33466788888888887 7999999999998876544321 123446777888888999999999999999
Q ss_pred HHHhhhchh--hHHh-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh-------------------C-hhh---HHHHH
Q 006898 384 QVNQVIGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-VGF---FDDKL 437 (626)
Q Consensus 384 ~~~~~~~~~--~~~~-~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~-------------------~-~~~---~~~~l 437 (626)
.+....+.. .+.. .+++.+....++.+..+|..+++++..+++.. . ... +.+.+
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (462)
T 1ibr_B 243 KIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYL 322 (462)
T ss_dssp HHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhc
Confidence 998766532 1224 78888888888999999999999999887653 0 111 23568
Q ss_pred HHHHHHHhc-------CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH-
Q 006898 438 GALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE- 509 (626)
Q Consensus 438 ~p~l~~~l~-------d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~- 509 (626)
+|.++..+. |.++.+|.+|+.+++.++..+|. .....++|.+.+.+++++|.+|.+++.+++.+++.++.+
T Consensus 323 ~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~ 401 (462)
T 1ibr_B 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (462)
T ss_dssp HHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT
T ss_pred cHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHH
Confidence 888888774 34578999999999999999984 456788999999999999999999999999999876533
Q ss_pred --HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc----hhhhcccchHH
Q 006898 510 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VSTFSVSPFSF 559 (626)
Q Consensus 510 --~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~ 559 (626)
...+.++|.+...++|+++.||..|+++|+++....++. .+.+.+++.|.
T Consensus 402 ~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 345789999999999999999999999999999988763 23344444444
No 14
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.92 E-value=3.5e-22 Score=211.61 Aligned_cols=487 Identities=12% Similarity=0.109 Sum_probs=347.5
Q ss_pred ccCCchHHHHHHH-HHHhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHh
Q 006898 56 NNDDDDEVLLAMA-EELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA 134 (626)
Q Consensus 56 ~~~~~~~vr~~~~-~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~ 134 (626)
+.+++.+.|..+. +.+..... | .+. ....+-+.+++++++..+|+.+..++..+++.- ++ ....+.+.+.+.+
T Consensus 22 L~~~~~~~k~~~~~kli~~~~~--G-~d~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e-~~~l~~n~l~kdL 95 (591)
T 2vgl_B 22 LNNEKKEKRKEAVKKVIAAMTV--G-KDV-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PD-MAIMAVNSFVKDC 95 (591)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHT--T-CCC-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HH-HHHTTHHHHGGGS
T ss_pred HcCCCHHHHHHHHHHHHHHHHC--C-CCh-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-ch-HHHHHHHHHHHHc
Confidence 3445555555444 44443322 3 333 233444455788899999999988888877642 22 2223456666677
Q ss_pred cCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchh-hhHHHHHHHhhcC
Q 006898 135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK-TDIMSIFEDLTQD 213 (626)
Q Consensus 135 ~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~l~~l~~d 213 (626)
+++++.+|..|...++.+. .++..+.+.+.+..++.|+++.||+.|+.++..+....+ +... ..+++.+..+++|
T Consensus 96 ~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p-~~~~~~~~~~~l~~lL~d 171 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA-QMVEDQGFLDSLRDLIAD 171 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh-hhcccccHHHHHHHHhCC
Confidence 8888999999988887764 567788899999999999999999999999999998543 3322 3688999999999
Q ss_pred CchhHHHHHHHHHHHhhcccCch---hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhc
Q 006898 214 DQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLL 289 (626)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l 289 (626)
+++.|+..|+.++..++...+.. ...+..++.+...+.+.++..+...++.++.++ +.+ .....+++.+..++
T Consensus 172 ~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~~~~~~~~l~~l~~~l 248 (591)
T 2vgl_B 172 SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN---PKDDREAQSICERVTPRL 248 (591)
T ss_dssp SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---CCSHHHHHHHHHHHTTCS
T ss_pred CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHH
Confidence 99999999999999998765432 112233444444455666767777766665433 111 12246888888899
Q ss_pred CCChHHHHHHHHHhHHHHHHhh--ChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHH
Q 006898 290 RDNEAEVRIAAAGKVTKFCRIL--NPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL 364 (626)
Q Consensus 290 ~d~~~~vr~~a~~~l~~l~~~~--~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 364 (626)
++.++.|+.+|+.++..+...+ +++ ...+.+.+.+..+. ++++.+|..++..++.+....+. .+.+.+ ..+.
T Consensus 249 ~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~~-~~~~ 325 (591)
T 2vgl_B 249 SHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQEI-KVFF 325 (591)
T ss_dssp CSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTCT-TTTS
T ss_pred cCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHHH-Hhhe
Confidence 9999999999999998886543 122 22345566666665 47899999999999998765332 111111 1122
Q ss_pred HhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH
Q 006898 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444 (626)
Q Consensus 365 ~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~ 444 (626)
++.+++..||..++..+..++..-+ .+.+++.+...+.+.++.+|..++.+++.++..++. ..+.+++.+..+
T Consensus 326 -~~~~d~~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~l 398 (591)
T 2vgl_B 326 -VKYNDPIYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDL 398 (591)
T ss_dssp -CCTTSCHHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHH
T ss_pred -eccCChHHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHH
Confidence 2224449999999998888764432 256888888999999999999999999999876532 245688999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhc-CCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhC
Q 006898 445 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 523 (626)
Q Consensus 445 l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~-~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l 523 (626)
+.+....|+..+..+++.+...... ....+++.+.+.+. ..++.+|..+++++|..+...... ..++..+....
T Consensus 399 l~~~~~~v~~e~i~~l~~ii~~~p~--~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~---~~~l~~l~~~~ 473 (591)
T 2vgl_B 399 IQTKVNYVVQEAIVVIRDIFRKYPN--KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA---DELLESFLEGF 473 (591)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHSCS--SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH---HHHHHHHSTTC
T ss_pred HcccchHHHHHHHHHHHHHHHHCcc--hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCH---HHHHHHHHHhh
Confidence 9999999999999999999877553 24567788888776 467889999999999998766432 46677777777
Q ss_pred CCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccC-CCccccc
Q 006898 524 KDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNV-NNFNVGF 572 (626)
Q Consensus 524 ~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d-~d~~vr~ 572 (626)
.+.++.||..++.++.++....+.. ..+.+...+. ....| .|.+||.
T Consensus 474 ~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~-~~~~d~~d~evrd 521 (591)
T 2vgl_B 474 HDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLS-LATQDSDNPDLRD 521 (591)
T ss_dssp SSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHH-HHHTTCCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHH-HhhhcCCChHHHH
Confidence 7888999999999999998875432 1234444555 65555 6789999
No 15
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=1.8e-22 Score=212.86 Aligned_cols=472 Identities=15% Similarity=0.085 Sum_probs=269.1
Q ss_pred HhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh-hHH--HhHHHHHHHHhcCCccchhHHHhh
Q 006898 71 LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES-DLV--DWYIPLVKRLAAGEWFTARVSACG 147 (626)
Q Consensus 71 l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~-~~~--~~l~~~l~~l~~~~~~~~r~~a~~ 147 (626)
++++.++.++.......+|.+..++.++++.+|..|+.+|..++..-+.. .+. ...++.+
T Consensus 2 ~~~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L----------------- 64 (529)
T 1jdh_A 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI----------------- 64 (529)
T ss_dssp CCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHH-----------------
T ss_pred hHHHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHH-----------------
Confidence 46777787777777888888888888999999999999999988653221 111 0122222
Q ss_pred HhHHhcCCCChHHHHHHHHHHHHhcC-CCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHH
Q 006898 148 LFHIAYPSAPDILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVE 224 (626)
Q Consensus 148 ~l~~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~ 224 (626)
..++. ++++.+|..++.+|..++..-.. .......+|.+.++++++++.++..++.
T Consensus 65 ---------------------v~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~ 123 (529)
T 1jdh_A 65 ---------------------VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT 123 (529)
T ss_dssp ---------------------HHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ---------------------HHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 22222 23455555555555554432110 0111234556666666666666666666
Q ss_pred HHHHhhcccCc--hh-hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCh-HHHH
Q 006898 225 GCAALGKLLEP--QD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNE-AEVR 297 (626)
Q Consensus 225 ~l~~l~~~~~~--~~-~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~-~~vr 297 (626)
+|..++...+. .. .....+|.+..++.++++.+|..++.++..++... .........++.+..++++.+ ...+
T Consensus 124 ~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~ 203 (529)
T 1jdh_A 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203 (529)
T ss_dssp HHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHH
Confidence 66666544322 11 12445666666666666666666666665554310 000111234555666655443 3344
Q ss_pred HHHHHhHHHHHHhhCh--HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHH
Q 006898 298 IAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR 375 (626)
Q Consensus 298 ~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 375 (626)
..+...+..++..-.. .......++.+..++.+.+..++..++.++..++...+........+|.+..++.++++.+|
T Consensus 204 ~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 283 (529)
T 1jdh_A 204 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVV 283 (529)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHH
Confidence 4455555555432111 11223456777777777777777777777777765433222233567777777777777888
Q ss_pred HHHHHhhHHHHhhhc---hhhHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhCh------hhHHHHHHHHHHHH
Q 006898 376 LNIISKLDQVNQVIG---IDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQW 444 (626)
Q Consensus 376 ~~a~~~L~~~~~~~~---~~~~~~~i~~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~------~~~~~~l~p~l~~~ 444 (626)
..++.+|+.++..-. ........++.+.+++.+ .++.+|..++.++..++...+. .......+|.+..+
T Consensus 284 ~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l 363 (529)
T 1jdh_A 284 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 363 (529)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH
Confidence 877777777754311 011123456666666653 3467777777777777543222 11222346777777
Q ss_pred hcCCc-hHHHHHHHHHHHHHHHHhCh--HHHhhhhHHHHHhhhcCCChHHHHHHHH----------------------HH
Q 006898 445 LQDKV-YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILR----------------------AI 499 (626)
Q Consensus 445 l~d~~-~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~~~~~~vR~~a~~----------------------~l 499 (626)
+.++. +.+|..++++++.++..-.. ......++|.+.+++.++++.+|..+++ ++
T Consensus 364 L~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al 443 (529)
T 1jdh_A 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 443 (529)
T ss_dssp TSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHH
Confidence 77765 47888888887777642111 1223456777777777666666655444 44
Q ss_pred HHhccccCh--HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhc--cchhhhcccchHHhhhccCCCcccccccc
Q 006898 500 SLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVSTFSVSPFSFMLYLNVNNFNVGFIFA 575 (626)
Q Consensus 500 ~~i~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~--~~~~~~~i~~~l~~~l~~d~d~~vr~~~~ 575 (626)
..++..... .......+|.+..++.|++++||..++++|+++...-. ........++.|. .+..++|.+|+.
T Consensus 444 ~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~-~l~~~~~~~v~~--- 519 (529)
T 1jdh_A 444 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT-ELLHSRNEGVAT--- 519 (529)
T ss_dssp HHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHH-HGGGCSSHHHHH---
T ss_pred HHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHH-HHhcCCCHHHHH---
Confidence 444432111 12334677999999999999999999999999874311 1122346778888 999999999999
Q ss_pred cCchhHHHHHHHHHH
Q 006898 576 AFPLVLFSCLALNYC 590 (626)
Q Consensus 576 ~~~~~~~a~~al~~~ 590 (626)
+|..+|..+
T Consensus 520 ------~a~~aL~~l 528 (529)
T 1jdh_A 520 ------YAAAVLFRM 528 (529)
T ss_dssp ------HHHHHHHHH
T ss_pred ------HHHHHHHhc
Confidence 999998765
No 16
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.91 E-value=8.5e-22 Score=214.82 Aligned_cols=484 Identities=14% Similarity=0.065 Sum_probs=343.6
Q ss_pred hcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH--H--HHHHHHHHHH
Q 006898 95 CTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--L--KTELRSIYTQ 170 (626)
Q Consensus 95 ~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~--~~~l~~~l~~ 170 (626)
+.+++..+|..+++.+..... ..+....+|.+..++.+++..+|..|+..+..++...... . ...+++.+..
T Consensus 124 L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~ 199 (780)
T 2z6g_A 124 LAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 199 (780)
T ss_dssp --CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHH
Confidence 345677888888877764422 2333556777777888888889999999999987753221 1 1356777777
Q ss_pred hcC-CCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhh-hhhhHH
Q 006898 171 LCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDC-VAHILP 244 (626)
Q Consensus 171 l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~i~~ 244 (626)
.+. ++++.+|..++.+|..++..-.. .......+|.+..++.++++.+|..|+.+|.+++..... ..+ ....+|
T Consensus 200 ~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~ 279 (780)
T 2z6g_A 200 TMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQ 279 (780)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHH
Confidence 665 45899999999999998764221 112235789999999999999999999999999876543 122 356889
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCChHH-HHHHHHHhHHHHHHhhCh--HHHHH
Q 006898 245 VIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNEAE-VRIAAAGKVTKFCRILNP--ELAIQ 318 (626)
Q Consensus 245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~--~~~~~ 318 (626)
.+..++.++++.+|..++.++..++... .........++.+..++++.+++ .+..+..++..++..-.. .....
T Consensus 280 ~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~ 359 (780)
T 2z6g_A 280 KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 359 (780)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHh
Confidence 9999999999999999999888776311 00112235678888888876644 455667777777652221 12234
Q ss_pred hhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHH
Q 006898 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLS 395 (626)
Q Consensus 319 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~ 395 (626)
..+|.+..++.+.+..++..++.++..++...........++|.+..++.+.++.+|..|+.+|+.+...-... ...
T Consensus 360 g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~ 439 (780)
T 2z6g_A 360 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 439 (780)
T ss_dssp THHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 56789999999999999999999999988654332223468899999999999999999999999986532111 112
Q ss_pred hhHHHHHHHHhcC-CCh-HHHHHHHHHHHHHHHhhCh------hhHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHH
Q 006898 396 QSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEE 466 (626)
Q Consensus 396 ~~i~~~l~~~~~~-~~~-~~r~~~~~~l~~l~~~~~~------~~~~~~l~p~l~~~l~d~~~-~VR~~a~~~l~~l~~~ 466 (626)
...++.+.+++.+ .++ .+|..++.++..++...+. .......+|.+..++.+++. .+|..|+++|+.++..
T Consensus 440 ~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 440 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519 (780)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Confidence 3567888888865 343 8999999999988653322 12223457888999987775 9999999999999742
Q ss_pred hC--hHHHhhhhHHHHHhhhcCCC----------------------hHHHHHHHHHHHHhccccChH--HhhhcHHHHHh
Q 006898 467 FG--PEWAMQHITPQVLEMINNPH----------------------YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVI 520 (626)
Q Consensus 467 ~~--~~~~~~~il~~l~~~l~~~~----------------------~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~ 520 (626)
-. .......++|.|.+++.+.+ ..++..++.++++++..-... ......+|.|.
T Consensus 520 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv 599 (780)
T 2z6g_A 520 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFV 599 (780)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHH
Confidence 11 11223567788887775543 346677888888876421111 12456889999
Q ss_pred hhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHH
Q 006898 521 NASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHR 592 (626)
Q Consensus 521 ~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~ 592 (626)
.++.+++++||..++.+|..+...-... ......++.|. .+..+++.+||. +|..||..+..
T Consensus 600 ~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~-~Ll~~~~~~Vr~---------~A~~aL~~l~~ 663 (780)
T 2z6g_A 600 QLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT-ELLHSRNEGVAT---------YAAAVLFRMSE 663 (780)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHH-HGGGCSCHHHHH---------HHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHH-HHHcCCCHHHHH---------HHHHHHHHHHc
Confidence 9999999999999999999986431111 12235778888 899999999999 99999987753
No 17
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.90 E-value=1.7e-20 Score=198.90 Aligned_cols=575 Identities=13% Similarity=0.096 Sum_probs=401.8
Q ss_pred cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhC---------hH--------hhhhhhcccccc-ccC--CchHHHHHHHH
Q 006898 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALG---------EE--------RTRKELIPFLSE-NND--DDDEVLLAMAE 69 (626)
Q Consensus 10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~---------~~--------~~~~~l~~~l~~-~~~--~~~~vr~~~~~ 69 (626)
.++.+.+-|.+++++.-..+...+..+...+. |+ ...+.++..|.. +.+ -++..|..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~ 172 (810)
T 3now_A 93 GVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIE 172 (810)
T ss_dssp CHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHH
Confidence 45677778888888777777666665543221 11 122344444444 333 36788999998
Q ss_pred HHhccccccCC--cchhh---cchHHHhhhhc--C--------cchHHHHHHHHHHHHHHhhcCh----hhHHHhHHHHH
Q 006898 70 ELGVFIPYVGG--VEHAH---VLLPPLETLCT--V--------EETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLV 130 (626)
Q Consensus 70 ~l~~~~~~~~~--~~~~~---~l~~~l~~l~~--~--------~~~~vR~~a~~~l~~i~~~~~~----~~~~~~l~~~l 130 (626)
.+-.-+++-.. ...+. .+..++.-... + -.+.+|..|.-++.++.+.+.. +...+.+-.++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 252 (810)
T 3now_A 173 LITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYI 252 (810)
T ss_dssp HHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 88776664321 11111 11112211111 1 1457899999999999999874 33344455556
Q ss_pred HHHhcCCccchhHHHhhHhHHhcCCCChH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cchhhhHH
Q 006898 131 KRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIM 204 (626)
Q Consensus 131 ~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll 204 (626)
..............|+..+..+++..++. ..+..++.+..++.+++..++..|+.+++..+..-.. +.+...-+
T Consensus 253 ~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv 332 (810)
T 3now_A 253 KDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV 332 (810)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH
T ss_pred HHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc
Confidence 55555555556677888888888876653 1346788999999999999999999999997664221 22222234
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHhhcccC---c-h----hhhhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhC-
Q 006898 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLE---P-Q----DCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVG- 273 (626)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~-~----~~~~~i~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~- 273 (626)
|.+..++.++++.+|..|+.+|..++...+ + . .-...+++.+.+++.++ +..+|..++.+|..++....
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v 412 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC 412 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence 899999998888999999999999875432 1 1 12345678888887777 78899999999998864211
Q ss_pred -CCcc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-----------------------------------hHHH
Q 006898 274 -PEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-----------------------------------PELA 316 (626)
Q Consensus 274 -~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-----------------------------------~~~~ 316 (626)
.... ....+|.++.+++.+++.++..++.+|+.++.... ...+
T Consensus 413 k~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vv 492 (810)
T 3now_A 413 KEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA 492 (810)
T ss_dssp HHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHH
Confidence 0111 23588999999988889999999999999987321 0112
Q ss_pred HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH-H-HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH
Q 006898 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (626)
Q Consensus 317 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~ 394 (626)
....+|.+.+++.++++.+|..+++++..++..-.. . ....-.+|.++.++.+.++.+|..|+.+|.+++....++..
T Consensus 493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 235789999999999999999999999999843211 1 12234789999999999999999999999998865444321
Q ss_pred -----HhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhh---ChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 006898 395 -----SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (626)
Q Consensus 395 -----~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~---~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~ 465 (626)
....+|.|.+++.++ +...+..++.++..++..- .........+|.+..++.+.+..||..|+++++.++.
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 124688999998755 4455667888888887542 1122334568889999999999999999999999975
Q ss_pred HhCh--HHHh-hhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---HHhh-hcHHHHHhhhCCCCCchHHHHHHHHH
Q 006898 466 EFGP--EWAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITC-SRLLPVVINASKDRVPNIKFNVAKVL 538 (626)
Q Consensus 466 ~~~~--~~~~-~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~~~~-~~~l~~l~~~l~d~~~~vR~~a~~~l 538 (626)
.-.. .... ...++.|..++..++..+|..|+.+++++...... ..+. ...+|.|..++.+++..+|..|++++
T Consensus 653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL 732 (810)
T 3now_A 653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVII 732 (810)
T ss_dssp SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 2111 1111 35789999999999999999999999999863221 2233 57899999999999999999999999
Q ss_pred HHHHhhhcc---chhhhcccchHHhhhccCC---CcccccccccCchhHHHHHHHHHHHHHh
Q 006898 539 QSLIPIVDQ---SVSTFSVSPFSFMLYLNVN---NFNVGFIFAAFPLVLFSCLALNYCHRWW 594 (626)
Q Consensus 539 ~~i~~~~~~---~~~~~~i~~~l~~~l~~d~---d~~vr~~~~~~~~~~~a~~al~~~~~~~ 594 (626)
.++...-+. .-.....++.|. .++.++ +.++.. .|.+||+.+....
T Consensus 733 ~NL~~~s~e~~~~l~e~G~i~~L~-~LL~~~d~~~~~i~e---------~Al~aL~~ll~~g 784 (810)
T 3now_A 733 LNMINAGEEIAKKLFETDIMELLS-GLGQLPDDTRAKARE---------VATQCLAAAERYR 784 (810)
T ss_dssp HHHHTTCHHHHHHHHTSTHHHHHT-TSCCCTTSTTHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHH-HHHhCcccCcHHHHH---------HHHHHHHHHHhCC
Confidence 999863221 133456788888 787655 577777 8888988886543
No 18
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=9.4e-21 Score=203.66 Aligned_cols=494 Identities=13% Similarity=0.062 Sum_probs=341.5
Q ss_pred cccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhh-HH--HhHHHHHHHHhc-CCccchhHHHhhHh
Q 006898 74 FIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-LV--DWYIPLVKRLAA-GEWFTARVSACGLF 149 (626)
Q Consensus 74 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~-~~--~~l~~~l~~l~~-~~~~~~r~~a~~~l 149 (626)
++.+.++.......+|.+..++.++++.+|..|+.+|..++....... +. ...++.+...+. +++..+|..++..+
T Consensus 2 l~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L 81 (644)
T 2z6h_A 2 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTL 81 (644)
T ss_dssp ----------CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cccccchhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 344445555666778888888888999999999999999988765422 11 234555555554 44778899999888
Q ss_pred HHhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--c-hhhhHHHHHHHhhcCCchhHHHHHH
Q 006898 150 HIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--H-LKTDIMSIFEDLTQDDQDSVRLLAV 223 (626)
Q Consensus 150 ~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~-~~~~ll~~l~~l~~d~~~~vr~~a~ 223 (626)
..+....... .....++.+..+++++++.+|..++.+|.+++...... . .....+|.+.+++.++++.++..++
T Consensus 82 ~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~ 161 (644)
T 2z6h_A 82 HNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 161 (644)
T ss_dssp HHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHH
T ss_pred HHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHH
Confidence 8776542110 12347788999999999999999999999999864321 1 2356889999999999999999999
Q ss_pred HHHHHhhcccCc---hhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHHH
Q 006898 224 EGCAALGKLLEP---QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVR 297 (626)
Q Consensus 224 ~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr 297 (626)
.+|..++...+. .......++.+..++.+. ...++..++.++..++..-. ........++.+..++++.++.++
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 999988853222 112344677777777655 46677888888877763111 001123578899999999999999
Q ss_pred HHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc--HH-HHHHhHHHHHHHhhcCC--CH
Q 006898 298 IAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KD-ATIEQLLPIFLSLLKDE--FP 372 (626)
Q Consensus 298 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--~~-~~~~~l~~~l~~~l~d~--~~ 372 (626)
..++.+|..++...........++|.+.+++.+.++.+|..++.++..++..-. .. ......++.+..++.+. .+
T Consensus 242 ~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~ 321 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 321 (644)
T ss_dssp HHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcH
Confidence 999999999987543333335678999999999999999999999999875321 11 12234678888888753 37
Q ss_pred HHHHHHHHhhHHHHhhhchh------hHHhhHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHH
Q 006898 373 DVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQ 443 (626)
Q Consensus 373 ~vr~~a~~~L~~~~~~~~~~------~~~~~i~~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~--~~~~~~~l~p~l~~ 443 (626)
.++..++.+|+.+....+.+ ......+|.+.+++.+++ +.+|..++.++..++..-. .......++|.+..
T Consensus 322 ~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~ 401 (644)
T 2z6h_A 322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 401 (644)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHH
Confidence 99999999999997543321 122457899999998775 8999999999999875321 12233456777777
Q ss_pred HhcCCch----------------------HHHHHHHHHHHHHHHHhCh--HHHhhhhHHHHHhhhcCCChHHHHHHHHHH
Q 006898 444 WLQDKVY----------------------SIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILRAI 499 (626)
Q Consensus 444 ~l~d~~~----------------------~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~~~~~~vR~~a~~~l 499 (626)
++.+.+. .++..++.+|..++..-.. .......+|.+.+++.+++..+|..++.++
T Consensus 402 lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 481 (644)
T 2z6h_A 402 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 481 (644)
T ss_dssp HHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7766443 4555666666666532211 112356789999999999999999999999
Q ss_pred HHhccccChH--HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhc-ccchHHhhhccCCCcc
Q 006898 500 SLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFS-VSPFSFMLYLNVNNFN 569 (626)
Q Consensus 500 ~~i~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~-i~~~l~~~l~~d~d~~ 569 (626)
.+++..-... ......++.|..+++++++.||..|+++|+.+...-+.. +... ....+. .+..+.+..
T Consensus 482 ~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~-~~~~~~~~il~-~~~~~~~~~ 552 (644)
T 2z6h_A 482 CELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD-YKKRLSVELTS-SLFRTEPMA 552 (644)
T ss_dssp HHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHH-HHSCCSCGG
T ss_pred HHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHh-hhcccchHHHH-HHHhCCCcc
Confidence 9987531111 123446788999999999999999999999997754322 2121 255556 666555433
No 19
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.90 E-value=2.1e-19 Score=190.63 Aligned_cols=570 Identities=12% Similarity=0.060 Sum_probs=392.2
Q ss_pred HHHHHHHhcC-ccHHHHHHHHhhHHHHHHhhChHhhh---hhh-cccccc-ccCCchHHHHHHHHHHhccccccC-----
Q 006898 11 IAVLIDELKN-DDIQLRLNSIRRLSTIARALGEERTR---KEL-IPFLSE-NNDDDDEVLLAMAEELGVFIPYVG----- 79 (626)
Q Consensus 11 i~~l~~~l~s-~d~~~r~~a~~~l~~i~~~~~~~~~~---~~l-~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~----- 79 (626)
+..+..-+++ .|++....|++.+..++.... +++. .++ +|.+.. +..+++++-.++..++..+...+.
T Consensus 51 ~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (810)
T 3now_A 51 IAKVASLTKVEKDQDIYVNMVHLVAALCENSV-ERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNK 129 (810)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccH-HHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444455556 889999999999999976432 2221 111 344555 345677777777766655433221
Q ss_pred ---Ccc---------hhhcchHHHhhhhcCc--chHHHHHHHHHHHHHHhhcCh---hhH-HH-hHHHHHHHHhcCC---
Q 006898 80 ---GVE---------HAHVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRE---SDL-VD-WYIPLVKRLAAGE--- 137 (626)
Q Consensus 80 ---~~~---------~~~~l~~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~---~~~-~~-~l~~~l~~l~~~~--- 137 (626)
+++ ....++..|..++.+. ....|..++..+.+-..+-.. ..+ .. .+..++.-...-+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~ 209 (810)
T 3now_A 130 PDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYK 209 (810)
T ss_dssp TTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSC
T ss_pred cccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCcccc
Confidence 111 2344555555666665 567899888777655432211 111 11 1222332222211
Q ss_pred -------ccchhHHHhhHhHHhcCCCCh-----HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cch-hh
Q 006898 138 -------WFTARVSACGLFHIAYPSAPD-----ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHL-KT 201 (626)
Q Consensus 138 -------~~~~r~~a~~~l~~~~~~~~~-----~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~-~~ 201 (626)
....|..+.-++..+++.... ...+.+-.++...+...+..-+-.++.++..+...... ..+ ..
T Consensus 210 ~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~ 289 (810)
T 3now_A 210 YESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVARE 289 (810)
T ss_dssp CSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTT
T ss_pred ccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhcc
Confidence 356899999999999988762 34444455555566666666666677777777654322 122 34
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC----Cc
Q 006898 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EP 276 (626)
Q Consensus 202 ~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----~~ 276 (626)
..+|.+..+++++++.++..|+.+++..+..-.. +.+.+.-.|.+..++.+.+..+|..++.+|..++...+. ..
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~ 369 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRP 369 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccc
Confidence 6789999999999999999999999997755222 222223348999999888899999999999888753321 11
Q ss_pred c----ccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhChH--HHH-HhhHHHHHHhccCCCHHHHHHHHHHHHhhh
Q 006898 277 T----RMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE--LAI-QHILPCVKELSSDSSQHVRSALASVIMGMA 347 (626)
Q Consensus 277 ~----~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~-~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~ 347 (626)
+ ...+++.+.+++.++ ++++|..|+++|..++..-... ... ...+|.|.+++++.+..+...+..+++.++
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt 449 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLC 449 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 1 235788899988877 7899999999999987632211 121 467899999988888999999999999998
Q ss_pred hhhc-----------------------------------HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch-
Q 006898 348 PLLG-----------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI- 391 (626)
Q Consensus 348 ~~~~-----------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~- 391 (626)
.... +.......+|.+..+++.+++.+|..|+++|+.++..-..
T Consensus 450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r 529 (810)
T 3now_A 450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELR 529 (810)
T ss_dssp TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 6321 0111224789999999999999999999999999743111
Q ss_pred -hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH
Q 006898 392 -DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDK-VYSIRDAAANNLKRLA 464 (626)
Q Consensus 392 -~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~~l~p~l~~~l~d~-~~~VR~~a~~~l~~l~ 464 (626)
.......+|.|..++.+.+...|..+..++..++....+... ....+|.+..++... ....+..|+.+|..++
T Consensus 530 ~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa 609 (810)
T 3now_A 530 GKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA 609 (810)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 122356789999999999999999999999998865444321 123678888888754 4445668999999987
Q ss_pred HHhC---hHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh-HHhh--hcHHHHHhhhCCCCCchHHHHHHHHH
Q 006898 465 EEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITC--SRLLPVVINASKDRVPNIKFNVAKVL 538 (626)
Q Consensus 465 ~~~~---~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~-~~~~--~~~l~~l~~~l~d~~~~vR~~a~~~l 538 (626)
..-. ........+|.+.+++.+++..+|..|++++++++..-.. ..+. ...++.|..++..++..+|..|+++|
T Consensus 610 ~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~AL 689 (810)
T 3now_A 610 SMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGAL 689 (810)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5421 1123356789999999999999999999999999863211 1122 35889999999999999999999999
Q ss_pred HHHHhhhcc---chhh-hcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898 539 QSLIPIVDQ---SVST-FSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH 591 (626)
Q Consensus 539 ~~i~~~~~~---~~~~-~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~ 591 (626)
+.+...... .... ...+|.|. .++.++|.+++. .|.+++..+.
T Consensus 690 anLt~~s~~~~~~ii~~~g~I~~Lv-~LL~s~d~~vq~---------~A~~aL~NL~ 736 (810)
T 3now_A 690 AIITSVSVKCCEKILAIASWLDILH-TLIANPSPAVQH---------RGIVIILNMI 736 (810)
T ss_dssp HHHHHHCHHHHHHHHTSTTHHHHHH-HHHTCSSHHHHH---------HHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHH-HHHCCCCHHHHH---------HHHHHHHHHH
Confidence 999874221 1223 46788898 899999999999 8998887764
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.90 E-value=4.4e-21 Score=197.92 Aligned_cols=379 Identities=11% Similarity=0.073 Sum_probs=290.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc----hhh-hHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCc---
Q 006898 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKT-DIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP--- 235 (626)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~-~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~--- 235 (626)
++.+...++++++.+|..++..+..+......+. ... .++|.+.+++.++ ++.+|..++.++..++...+.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5666677778889999999999999865322211 223 6889999988888 889999999999998864332
Q ss_pred hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhh
Q 006898 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRIL 311 (626)
Q Consensus 236 ~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~ 311 (626)
......++|.+..++.++++.+|..++.+|+.++.... ........++.+..++++ .++++|..++.+++.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 12235689999999999999999999999999885311 011124578999999985 78999999999999998643
Q ss_pred Ch---HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q 006898 312 NP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (626)
Q Consensus 312 ~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~ 385 (626)
++ ......++|.+.+++.+.++.+|..++.++..++..... ......++|.+..++.++++.+|..++.+|+.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11 122367889999999999999999999999998864321 112335789999999999999999999999998
Q ss_pred Hhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 006898 386 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (626)
Q Consensus 386 ~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~ 459 (626)
....+.. .....++|.+.+++.++++.+|..++.+++.++..... ......++|.+..++.|+++.||..|+.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 7643221 12236889999999999999999999999998753211 12234688999999999999999999999
Q ss_pred HHHHHHHhChH----HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH---------HhhhcH-----HHHHhh
Q 006898 460 LKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------ITCSRL-----LPVVIN 521 (626)
Q Consensus 460 l~~l~~~~~~~----~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~---------~~~~~~-----l~~l~~ 521 (626)
++.++....++ .....++|.+.+++.++++.+|..++.++.+++...+.. .+...+ ++.+..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 99998764433 123568999999999999999999999999998643321 122222 567777
Q ss_pred hCCCCCchHHHHHHHHHHHHHh
Q 006898 522 ASKDRVPNIKFNVAKVLQSLIP 543 (626)
Q Consensus 522 ~l~d~~~~vR~~a~~~l~~i~~ 543 (626)
+..+++..||..|..++..+..
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHCC
Confidence 8888889999999999988764
No 21
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=1.1e-20 Score=206.13 Aligned_cols=493 Identities=12% Similarity=0.041 Sum_probs=326.2
Q ss_pred HHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcc-h--hhc
Q 006898 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE-H--AHV 86 (626)
Q Consensus 11 i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~-~--~~~ 86 (626)
+..+++.|++++...|..+.+.+...... ......+|.|.. +.++++.||..++.+|+++........ . .+.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~----~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA----ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH----HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 57899999999999999888877755321 112333444444 347789999999999999876321110 1 123
Q ss_pred chHHHhhhh-cCcchHHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH---H
Q 006898 87 LLPPLETLC-TVEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---L 160 (626)
Q Consensus 87 l~~~l~~l~-~~~~~~vR~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~ 160 (626)
+++.+..++ +++++.+|..|+.+|..+...-.. .......+|.+..++.+.+..+|..|+.++..++...... .
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 455544444 455889999999999998765322 1222347888889999888899999999999987654331 2
Q ss_pred -HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhcCCchh-HHHHHHHHHHHhhcccCc
Q 006898 161 -KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDS-VRLLAVEGCAALGKLLEP 235 (626)
Q Consensus 161 -~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~d~~~~-vr~~a~~~l~~l~~~~~~ 235 (626)
....++.+..++.++++.+|..++.++..++..... .......++.+..++.+.+++ .+..+..++..++.....
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~ 352 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH
Confidence 246788999999999999999999999987742110 112234567777888777654 455678888877753221
Q ss_pred --hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh
Q 006898 236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (626)
Q Consensus 236 --~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (626)
......+++.+..++.+.+..++..++.++..++...........++|.+..++++.++++|..|+.+|..++..-..
T Consensus 353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~ 432 (780)
T 2z6g_A 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432 (780)
T ss_dssp HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 122345788999999999999999999999999876544434457899999999999999999999999988763211
Q ss_pred H---HHHHhhHHHHHHhccC-CC-HHHHHHHHHHHHhhhhhhcHH------HHHHhHHHHHHHhhcCCC-HHHHHHHHHh
Q 006898 314 E---LAIQHILPCVKELSSD-SS-QHVRSALASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEF-PDVRLNIISK 381 (626)
Q Consensus 314 ~---~~~~~l~~~l~~l~~d-~~-~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~ 381 (626)
. ......++.+.+++.+ .+ ..+|..++.+++.++...+.. ......+|.+..++.+.+ +.+|..++.+
T Consensus 433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence 1 1113456777776654 23 489999999999997543321 122346888999998776 4999999999
Q ss_pred hHHHHhhhch--hhHHhhHHHHHHHHhcCCChH----------------------HHHHHHHHHHHHHHhhCh--hhHHH
Q 006898 382 LDQVNQVIGI--DLLSQSLLPAIVELAEDRHWR----------------------VRLAIIEYIPLLASQLGV--GFFDD 435 (626)
Q Consensus 382 L~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~----------------------~r~~~~~~l~~l~~~~~~--~~~~~ 435 (626)
|+++...-.. ......++|.+.+++.+.++. ++..++.++..++..... .....
T Consensus 513 L~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~ 592 (780)
T 2z6g_A 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL 592 (780)
T ss_dssp HHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHC
Confidence 9998742211 112245778887777654433 444555555555421100 01123
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh--ChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC
Q 006898 436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 507 (626)
Q Consensus 436 ~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~--~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~ 507 (626)
..+|.+..++.+++..||..|+.+|+.+...- .........++.|.+++.+++..+|..|+.++.++...-+
T Consensus 593 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 35677888888888888888888887775220 0011123467777888888888888888888888776443
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.89 E-value=8.2e-21 Score=199.61 Aligned_cols=380 Identities=11% Similarity=0.081 Sum_probs=266.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCc---h
Q 006898 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP---Q 236 (626)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---~ 236 (626)
++.+...+.++++.+|..++..|..+......+ .....++|.+..++.++ ++.+|..|+.+|..++...+. .
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 344455556666777777777777765432221 11234677777777776 677888888888777764322 1
Q ss_pred hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-
Q 006898 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN- 312 (626)
Q Consensus 237 ~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~- 312 (626)
.....++|.+..++.++++.+|..++.+|+.++... .........+|.+..++.+.+++++..++.+|..++..-+
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence 122456777777777778888888888888776421 0011123577888888888778888888888888875431
Q ss_pred --hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898 313 --PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (626)
Q Consensus 313 --~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~ 387 (626)
.......++|.+..++.+.++.+|..++.++..++...+. ......++|.+..++.+.++.+|..|+.+|+.++.
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 1233466788888888888888888888888888753221 11223567888888888888888888888888864
Q ss_pred hhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006898 388 VIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (626)
Q Consensus 388 ~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~ 461 (626)
..+. ..+...++|.+..++.++++.+|..++.+++.++..... ..+...++|.+..++.+++..+|..|+++|+
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3211 122246788888888888899999999988888753211 1223457888888998899999999999999
Q ss_pred HHHHHhCh--H----HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--------------HhhhcHHHHHhh
Q 006898 462 RLAEEFGP--E----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--------------ITCSRLLPVVIN 521 (626)
Q Consensus 462 ~l~~~~~~--~----~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--------------~~~~~~l~~l~~ 521 (626)
.++...++ + .....++|.+..++.++++.+|..++.++.++....+.. ......++.|..
T Consensus 409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~ 488 (530)
T 1wa5_B 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488 (530)
T ss_dssp HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHH
Confidence 99886543 2 223568999999999999999999999999988644321 112345778888
Q ss_pred hCCCCCchHHHHHHHHHHHHHhh
Q 006898 522 ASKDRVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 522 ~l~d~~~~vR~~a~~~l~~i~~~ 544 (626)
+..+++..|+..|..+|..+...
T Consensus 489 L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 489 CQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHcCCCHHHHHHHHHHHHHHCCc
Confidence 99999999999999999887754
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.89 E-value=8.7e-21 Score=199.45 Aligned_cols=380 Identities=10% Similarity=0.040 Sum_probs=294.3
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhC---
Q 006898 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG--- 273 (626)
Q Consensus 202 ~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~--- 273 (626)
..++.+...+.++++.+|..|+..+..+...... ......++|.+..++.++ ++.+|..++.+|+.++....
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3567777788888899999999999998765322 123456899999999987 89999999999998875211
Q ss_pred CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh
Q 006898 274 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350 (626)
Q Consensus 274 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~ 350 (626)
........+|.+..++++.++++|..|+.+|+.++.... .......++|.+..++.+.++.+|..++.++..++...
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 111124678999999999999999999999999986321 11233567899999999999999999999999998543
Q ss_pred ---cHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 006898 351 ---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (626)
Q Consensus 351 ---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l 424 (626)
........++|.+..++.+.++.+|..++.+|+.+...... ......++|.+.+++.++++.+|..++.+++.+
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 12334567899999999999999999999999999754221 112236789999999999999999999999998
Q ss_pred HHhhC---hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHHHHH
Q 006898 425 ASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRA 498 (626)
Q Consensus 425 ~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a~~~ 498 (626)
+...+ .......++|.+..++.++++.+|..|+++|+.++..... ......++|.+.+++.++++.+|..++.+
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a 406 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA 406 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 75322 1223346889999999999999999999999999753111 11235689999999999999999999999
Q ss_pred HHHhccccCh--H----HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---------chh-----hhcccchH
Q 006898 499 ISLLAPVMGS--E----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---------SVS-----TFSVSPFS 558 (626)
Q Consensus 499 l~~i~~~~~~--~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---------~~~-----~~~i~~~l 558 (626)
+++++...++ + .....++|.|..++.++++.||..++++|..+....+. ..+ ....++.|
T Consensus 407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L 486 (530)
T 1wa5_B 407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 486 (530)
T ss_dssp HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHH
Confidence 9999875443 2 23456899999999999999999999999999876432 111 12346677
Q ss_pred HhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898 559 FMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH 591 (626)
Q Consensus 559 ~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~ 591 (626)
. .+..+++.+|+. .|..++..+.
T Consensus 487 ~-~L~~~~~~~v~~---------~a~~il~~~~ 509 (530)
T 1wa5_B 487 F-NCQQNENDKIYE---------KAYKIIETYF 509 (530)
T ss_dssp H-GGGGCSCHHHHH---------HHHHHHHHHS
T ss_pred H-HHHcCCCHHHHH---------HHHHHHHHHC
Confidence 7 888999999999 7888777664
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=2e-20 Score=193.00 Aligned_cols=340 Identities=11% Similarity=0.046 Sum_probs=257.0
Q ss_pred hHHHhhhhcCcchHHHHHHHHHHHHHHhh-cCh---hhHHH-hHHHHHHHHhcCC-ccchhHHHhhHhHHhcCCCChH--
Q 006898 88 LPPLETLCTVEETCVRDKAVESLCRIGSQ-MRE---SDLVD-WYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-- 159 (626)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~-~~~---~~~~~-~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~-- 159 (626)
++.+...++++++.+|..|+.++..+... ..+ ..+.. .++|.+..++.++ ++.+|..++.++..++...++.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 55555566778888999999999987652 221 22233 5788888887777 7889999999999988765432
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhccc
Q 006898 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLL 233 (626)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~ 233 (626)
....+++.+..+++++++.+|..++.+|+.++...+. ......+++.+..++.+ +++.+|..++.++..++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 2246889999999999999999999999999874321 11223578888888885 68899999999999999764
Q ss_pred -Cc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 006898 234 -EP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307 (626)
Q Consensus 234 -~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 307 (626)
+. ......++|.+..++.+.++.+|..++.+++.++..... ......++|.+..++.++++++|..++.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 21 334577899999999999999999999999988742110 011245889999999999999999999999998
Q ss_pred HHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcCCCHHHHHHHHHh
Q 006898 308 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (626)
Q Consensus 308 ~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 381 (626)
+...+.. .....++|.+.+++.++++.+|..++.+++.++..... ......++|.+..++.+.++.+|..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 7643211 12235789999999999999999999999999853211 11224688999999999999999999999
Q ss_pred hHHHHhhhchhh----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Q 006898 382 LDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (626)
Q Consensus 382 L~~~~~~~~~~~----~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 427 (626)
|+.+.....++. ....++|.+.++++++++.+|..++.++..++..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999876533322 2245778888888888888888888888877653
No 25
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=1.1e-20 Score=202.99 Aligned_cols=459 Identities=14% Similarity=0.056 Sum_probs=333.9
Q ss_pred HHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHH----HHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCc-
Q 006898 123 VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL----KTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEP- 196 (626)
Q Consensus 123 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~----~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~- 196 (626)
....+|.+..++.+++..+|..|+..++.++....... ....++.+...+.+ +++.+|..++.+|..++.....
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 33467778888888888999999999999987665321 13567777777654 5899999999999987754221
Q ss_pred -cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--h-hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 006898 197 -AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--Q-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (626)
Q Consensus 197 -~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~ 272 (626)
.......+|.+.++++++++.+|..|+.+|.+++..... . ......+|.+..++.++++.++..++.+|..++...
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 112235789999999999999999999999999876543 1 124678999999999999999999999998887421
Q ss_pred C---CCccccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhh
Q 006898 273 G---PEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGM 346 (626)
Q Consensus 273 ~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l 346 (626)
+ ........++.+..++++.+ ..++..++.+|..++..-... ......++.+..++.+.+..++..++.++..+
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0 01122356888888887655 567778888887776422211 22345688899999999999999999999999
Q ss_pred hhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hhHHhhHHHHHHHHhcCC--ChHHHHHHHHHH
Q 006898 347 APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDR--HWRVRLAIIEYI 421 (626)
Q Consensus 347 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~~~~~i~~~l~~~~~~~--~~~~r~~~~~~l 421 (626)
+...........++|.+..++.+.++.+|..++.+|..+...-.. .......++.+.+++.+. .+.+|..++.++
T Consensus 252 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 865433223346889999999999999999999999998763211 112245788888888653 379999999999
Q ss_pred HHHHHhhChh------hHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHhCh--HHHhhhhHHHHHhhhcCCC----
Q 006898 422 PLLASQLGVG------FFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPH---- 488 (626)
Q Consensus 422 ~~l~~~~~~~------~~~~~l~p~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~~~~---- 488 (626)
..++...+.. ......+|.+..++.++. ..+|..++++++.++..-.. ......++|.+.+++.+++
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr 411 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ 411 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhh
Confidence 9997533321 223356888999998875 69999999999998743111 1234567888888776543
Q ss_pred ------------------hHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc
Q 006898 489 ------------------YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (626)
Q Consensus 489 ------------------~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~ 548 (626)
..++..++.++..++...... ......+|.|..++.+.++++|..++.+|.++...-...
T Consensus 412 ~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 491 (644)
T 2z6h_A 412 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 491 (644)
T ss_dssp TC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHH
Confidence 345667777777776532211 124568899999999999999999999999987531111
Q ss_pred --hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898 549 --VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH 591 (626)
Q Consensus 549 --~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~ 591 (626)
......++.|. .+..+++.+||. +|..+|..+.
T Consensus 492 ~~i~~~g~l~~L~-~ll~~~~~~vr~---------~A~~aL~~l~ 526 (644)
T 2z6h_A 492 EAIEAEGATAPLT-ELLHSRNEGVAT---------YAAAVLFRMS 526 (644)
T ss_dssp HHHHHTTCHHHHH-HHTTCSCHHHHH---------HHHHHHHHHT
T ss_pred HHHHHcCChhHHH-HHHcCCCHHHHH---------HHHHHHHHHh
Confidence 12235677888 899999999999 8888887764
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.87 E-value=4.6e-20 Score=194.48 Aligned_cols=476 Identities=12% Similarity=0.051 Sum_probs=312.2
Q ss_pred cccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChH-hhh--hhhcccccc-cc-CCchHHHHHHHHHHhccccccCCc-
Q 006898 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEE-RTR--KELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGV- 81 (626)
Q Consensus 8 ~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~-~~~--~~l~~~l~~-~~-~~~~~vr~~~~~~l~~~~~~~~~~- 81 (626)
..-++.|++.++++|+.+|..|...|..++..-... ... ...+|.+.. +. ++++++|..++..|.++...-...
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 356888999999999999999999999987532111 011 134455544 32 458899999999999876521100
Q ss_pred -chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcCh--hh-HHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC
Q 006898 82 -EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--SD-LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (626)
Q Consensus 82 -~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~--~~-~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~ 157 (626)
......+|.+..++.++++.+|..|+.+|..++..-+. .. .....+|.+..++.++++.+|..++..+..+....+
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 11234677788888888999999999999999886433 22 235678888899998888888888888887765432
Q ss_pred hH----HHHHHHHHHHHhcCCCC-HHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 006898 158 DI----LKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (626)
Q Consensus 158 ~~----~~~~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (626)
+. .....++.+..++.+.+ ..++..++.++..++..-.. .......++.+..++.++++.++..++.++..++
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 21 11234556666665443 55667778888877642211 1122357888999999999999999999999999
Q ss_pred cccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC--ChHHHHHHHHHhHH
Q 006898 231 KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD--NEAEVRIAAAGKVT 305 (626)
Q Consensus 231 ~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~ 305 (626)
...+.......++|.+.+++.++++.+|..++.+++.++..-. ........++.+..++.+ .+++++..++.+|+
T Consensus 256 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp TTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 8765544456789999999999999999999999998864210 001123467888888864 34799999999999
Q ss_pred HHHHhhCh------HHHHHhhHHHHHHhccCCC-HHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCHHHHH
Q 006898 306 KFCRILNP------ELAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRL 376 (626)
Q Consensus 306 ~l~~~~~~------~~~~~~l~~~l~~l~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~ 376 (626)
.++...+. .......+|.+.+++.+++ +.+|..++.+++.++..-.. ......++|.+..++.+.++.+|.
T Consensus 336 nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 415 (529)
T 1jdh_A 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 415 (529)
T ss_dssp HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHH
Confidence 98654222 1223356888899888776 79999999999998853221 122345789999999988899999
Q ss_pred HHHHhhHH--HHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHHHhcCCchHH
Q 006898 377 NIISKLDQ--VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWLQDKVYSI 452 (626)
Q Consensus 377 ~a~~~L~~--~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~--~~~~~~~l~p~l~~~l~d~~~~V 452 (626)
.++.+++. +......+ .++..++.++..++.... ........+|.+..++.|++.+|
T Consensus 416 ~a~~~l~n~~~~~~~~~~-------------------~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v 476 (529)
T 1jdh_A 416 RTSMGGTQQQFVEGVRME-------------------EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 476 (529)
T ss_dssp ----------CBTTBCHH-------------------HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHhcccCchhhhccccHH-------------------HHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHH
Confidence 99988876 22211111 222333444444332110 01122345678888889999999
Q ss_pred HHHHHHHHHHHHHH--hChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHh
Q 006898 453 RDAAANNLKRLAEE--FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL 502 (626)
Q Consensus 453 R~~a~~~l~~l~~~--~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i 502 (626)
|..++.+++.+... ..........++.+.+++.+++..+|..+..++.++
T Consensus 477 ~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 477 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 99999888887521 000011234456666666666666666666666554
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.87 E-value=1.5e-19 Score=190.12 Aligned_cols=380 Identities=11% Similarity=0.084 Sum_probs=285.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhhcccCc---h
Q 006898 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEP---Q 236 (626)
Q Consensus 165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~---~ 236 (626)
++.+...+.++++.+|..|+.++..++.....+ .....++|.+.+++.+++ +.+|..|+.+|..++...+. .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 455666667778889999999998887654321 123457888888888876 88999999999988864332 1
Q ss_pred hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhC
Q 006898 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILN 312 (626)
Q Consensus 237 ~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~ 312 (626)
......+|.+..++.++++.+|..++.+|+.++.... ........++.++.++ .+.++.++..++.+|..++...+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 1234578888888888999999999999998875311 0111235788888888 67788999999999999887532
Q ss_pred --hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898 313 --PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (626)
Q Consensus 313 --~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~ 387 (626)
.......++|.+.+++.+.++.++..++.++..++...... .....++|.+..++.+.++.++..|+.+|+.++.
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 22334678899999999999999999999999988543221 1223578899999999999999999999999875
Q ss_pred hhch---hhHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006898 388 VIGI---DLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNL 460 (626)
Q Consensus 388 ~~~~---~~~~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l 460 (626)
.... ..+...++|.+.+++.++ ++.+|..++.++..++..... ..+...++|.+..++.+.+..+|..|+.+|
T Consensus 316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL 395 (528)
T 4b8j_A 316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAI 395 (528)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3221 112245789999999888 899999999999999863211 122345688999999999999999999999
Q ss_pred HHHHHHhChHH----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH---------H-----hhhcHHHHHhhh
Q 006898 461 KRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------I-----TCSRLLPVVINA 522 (626)
Q Consensus 461 ~~l~~~~~~~~----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~---------~-----~~~~~l~~l~~~ 522 (626)
+.++...+++. ....+++.+..++.++++.++..++.++.+++...+.. . .....++.+..+
T Consensus 396 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L 475 (528)
T 4b8j_A 396 SNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL 475 (528)
T ss_dssp HHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG
T ss_pred HHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH
Confidence 99988744332 23568999999999999999999999999998643220 1 123356778888
Q ss_pred CCCCCchHHHHHHHHHHHHHhh
Q 006898 523 SKDRVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 523 l~d~~~~vR~~a~~~l~~i~~~ 544 (626)
.++++++|+..|..++..+...
T Consensus 476 ~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 476 QSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp GGCSSHHHHHHHHHHHHHHCC-
T ss_pred HcCCCHHHHHHHHHHHHHHCCC
Confidence 8999999999999999988765
No 28
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.87 E-value=1.6e-19 Score=191.83 Aligned_cols=506 Identities=11% Similarity=0.038 Sum_probs=335.1
Q ss_pred HHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhc-cccccccCCchHHHHHHHHHHhccccccCCcchhhcchH
Q 006898 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELI-PFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (626)
Q Consensus 11 i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~ 89 (626)
+..+-+.|+++|...|..+++.+-.+ ..+|.+. ..+. ..+..+.+++.+.|+..--.+..+++. .++....+.+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~-~~~G~d~--~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l~in 110 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYM-HMLGYPA--HFGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLLMTN 110 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHH-HHTTCCC--GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHH-HHcCCCC--cchHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHHHHH
Confidence 34445556666666666666555554 3334321 1111 222224467777777776666666552 2333334555
Q ss_pred HHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHH
Q 006898 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT 169 (626)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~ 169 (626)
.+.+-++|+++.+|-.|+.+++.+.. ..+.+.+.|.+..++.+.++.+|..|+.++..++...++ ..+.+++.+.
T Consensus 111 ~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l~ 185 (618)
T 1w63_A 111 CIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-LMEMFLPATK 185 (618)
T ss_dssp HHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGTT
T ss_pred HHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHHH
Confidence 66666788999999999999998863 244567788888899999999999999999998876543 3346778888
Q ss_pred HhcCCCCHHHHHHHHHhHHHHHHhhCc-cchhhhHHHHHHHhhcC---------------CchhHHHHHHHHHHHhhccc
Q 006898 170 QLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQD---------------DQDSVRLLAVEGCAALGKLL 233 (626)
Q Consensus 170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~d---------------~~~~vr~~a~~~l~~l~~~~ 233 (626)
.++.|+++.|+.+++.++..++...+. ......++|.+.+.+.+ .++..+...++.++.++..-
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~ 265 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 265 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC
T ss_pred HHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC
Confidence 889999999999999999998754321 01222345555444432 36677777888888877542
Q ss_pred CchhhhhhhHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 006898 234 EPQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307 (626)
Q Consensus 234 ~~~~~~~~i~~~l~~~~------~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 307 (626)
+. ..+.+.+.+..++ ++.+..|...+++++..+.. .........+.+..++.+.++++|..|+.++..+
T Consensus 266 ~~--~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i 340 (618)
T 1w63_A 266 DD--SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKT 340 (618)
T ss_dssp HH--HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 22 2334455555443 23345677777777765421 1111123567777888888999999999999999
Q ss_pred HHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898 308 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (626)
Q Consensus 308 ~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~ 387 (626)
+..-+ .......+.+...+.|++..+|..+++.+..++..-. .+.+++.+...+.+.+.++|..++.+++.++.
T Consensus 341 ~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 341 VQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRGMMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HhhCH--HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 87422 2234456677778899999999999999998876432 23456777777888899999999999999998
Q ss_pred hhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHH
Q 006898 388 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAE 465 (626)
Q Consensus 388 ~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d--~~~~VR~~a~~~l~~l~~ 465 (626)
.++++. ...++.+.+++++....++..++..+..+....+. .....++.+...+.+ ....+...+++++|.++.
T Consensus 415 k~~~~~--~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 415 KYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp SSCCCH--HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred HhCccH--HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 775443 45677777777665555555556666666554321 123344455555543 234455579999999987
Q ss_pred HhChH---------HHhhhhHHHHHhhhc--CCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHH
Q 006898 466 EFGPE---------WAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNV 534 (626)
Q Consensus 466 ~~~~~---------~~~~~il~~l~~~l~--~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a 534 (626)
.+... .....+++.+..+++ ..+..+|..++.++.++....+. ..+.+...|..+..|.+++||..|
T Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA 568 (618)
T 1w63_A 491 LLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRA 568 (618)
T ss_dssp HHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHH
Confidence 65320 011234555555554 56889999999999998876543 235556666677889999999999
Q ss_pred HHHHHHHHh
Q 006898 535 AKVLQSLIP 543 (626)
Q Consensus 535 ~~~l~~i~~ 543 (626)
...+.-+..
T Consensus 569 ~~y~~ll~~ 577 (618)
T 1w63_A 569 VEYNALFKK 577 (618)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 987776643
No 29
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.86 E-value=1.6e-19 Score=189.84 Aligned_cols=379 Identities=11% Similarity=0.050 Sum_probs=292.8
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhC---C
Q 006898 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVG---P 274 (626)
Q Consensus 203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~---~ 274 (626)
-+|.+...+.++++.+|..|+..+..+...... ......++|.+..++.+++ +.+|..++.+|+.++.... .
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 467777888888999999999999998765441 2244578999999988876 9999999999999985211 0
Q ss_pred CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh---HHHHHhhHHHHHHhc-cCCCHHHHHHHHHHHHhhhhhh
Q 006898 275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLL 350 (626)
Q Consensus 275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~ 350 (626)
.......+|.+..++.++++++|..|+.+|+.++..-.. .......+|.+..++ .+.++.++..++.++..++...
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 111235899999999999999999999999999863221 122235678888888 6789999999999999998653
Q ss_pred c--HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 006898 351 G--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (626)
Q Consensus 351 ~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~ 425 (626)
+ ........+|.+..++.+.++.++..++.+|+.++...... .....++|.+.+++.++++.+|..++.+++.++
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 2 23345678999999999999999999999999987543221 122357899999999999999999999999988
Q ss_pred HhhCh---hhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhhcCCChHHHHHHHH
Q 006898 426 SQLGV---GFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILR 497 (626)
Q Consensus 426 ~~~~~---~~~~~~l~p~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~l~~~~~~vR~~a~~ 497 (626)
..... ......++|.+..++.++ +..+|..|+++|+.++.. ..+ .....++|.|.+++.++++.+|..++.
T Consensus 315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 393 (528)
T 4b8j_A 315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW 393 (528)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 63221 122245789999999998 999999999999999853 222 123578899999999999999999999
Q ss_pred HHHHhccccChHH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc---------hh-----hhcccchHH
Q 006898 498 AISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------VS-----TFSVSPFSF 559 (626)
Q Consensus 498 ~l~~i~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---------~~-----~~~i~~~l~ 559 (626)
++++++...+++. ....+++.|..++.++++.++..++.+|..+....+.. .+ ....++.+.
T Consensus 394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 473 (528)
T 4b8j_A 394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIE 473 (528)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHH
Confidence 9999987644432 23568899999999999999999999999998764321 11 123456677
Q ss_pred hhhccCCCcccccccccCchhHHHHHHHHHHHH
Q 006898 560 MLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHR 592 (626)
Q Consensus 560 ~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~ 592 (626)
.+..+++.+++. .|...++.+..
T Consensus 474 -~L~~~~~~~v~~---------~a~~il~~~~~ 496 (528)
T 4b8j_A 474 -NLQSHDNNEIYE---------KAVKILEAYWM 496 (528)
T ss_dssp -HGGGCSSHHHHH---------HHHHHHHHHCC
T ss_pred -HHHcCCCHHHHH---------HHHHHHHHHCC
Confidence 788889999999 88888887643
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.86 E-value=2.7e-18 Score=182.34 Aligned_cols=529 Identities=10% Similarity=0.006 Sum_probs=358.7
Q ss_pred ccHHHHHHHhcCcc--HHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhc
Q 006898 9 YPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (626)
Q Consensus 9 ~~i~~l~~~l~s~d--~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~ 86 (626)
..+..++..+++.. .+.|....+.+.++-..+.. .+....+.++.+.+..... | .+. ..
T Consensus 10 ~~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~---------------~~~~~k~~~l~kli~~~~~--G-~d~-~~ 70 (618)
T 1w63_A 10 IRLRELIRTIRTARTQAEEREMIQKECAAIRSSFRE---------------EDNTYRCRNVAKLLYMHML--G-YPA-HF 70 (618)
T ss_dssp CCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTT---------------TCTTTHHHHHHHHHHHHHT--T-CCC-GG
T ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhC---------------CCHHHHHHHHHHHHHHHHc--C-CCC-cc
Confidence 56888888877543 34554444445444332221 1122233344444443332 2 222 22
Q ss_pred chHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHH
Q 006898 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS 166 (626)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~ 166 (626)
..+-..+++++++...|+..--++..+...- .+..-.....+.+-++++++.+|..|...++.+. .++..+.+.+
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~ 145 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER--QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAG 145 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 3333345666788888888777766665532 2222345677777788899999999999999987 3567788899
Q ss_pred HHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-hhhhhhhHHH
Q 006898 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPV 245 (626)
Q Consensus 167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~ 245 (626)
.+..++.|+++.||+.|+.++..+....+ .....+++.+..++.|+++.|+..|+.++..+++.-+. ......++|.
T Consensus 146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~ 223 (618)
T 1w63_A 146 EVEKLLKTSNSYLRKKAALCAVHVIRKVP--ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQ 223 (618)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 99999999999999999999999998643 33456788888999999999999999999998865432 1122334444
Q ss_pred HHHhcC---------------CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc------CCChHHHHHHHHHhH
Q 006898 246 IVNFSQ---------------DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL------RDNEAEVRIAAAGKV 304 (626)
Q Consensus 246 l~~~~~---------------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l 304 (626)
+...+. .+++..+..++++++.++..- ....+.+.+.+..++ ++.+..|...|++++
T Consensus 224 l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i 301 (618)
T 1w63_A 224 LVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND--DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTI 301 (618)
T ss_dssp HHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 433222 246777777888888776421 111234455555543 234567888888877
Q ss_pred HHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHH
Q 006898 305 TKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (626)
Q Consensus 305 ~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~ 384 (626)
..+.. .........+.+..++.++++.+|..++.+++.++...+. ......+.++.++.|++..||..++..+..
T Consensus 302 ~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~alelL~~ 376 (618)
T 1w63_A 302 MDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN--AVQRHRSTIVDCLKDLDVSIKRRAMELSFA 376 (618)
T ss_dssp HHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH--HHGGGHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred HhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH--HHHHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence 66422 1222234567777788888999999999999999865322 233455678899999999999999999998
Q ss_pred HHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 385 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
++..-.. +.+++.+.+.+.+.+..+|..++.+++.++..+.+. ....++.++.++.+....++..+...+..+.
T Consensus 377 l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii 450 (618)
T 1w63_A 377 LVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLI 450 (618)
T ss_dssp HCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHH
T ss_pred HcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 8764322 456778888888889999999999999999876543 2456778888888877778888888888888
Q ss_pred HHhChHHHhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChH---------HhhhcHHHHHhhhCC--CCCchHH
Q 006898 465 EEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---------ITCSRLLPVVINASK--DRVPNIK 531 (626)
Q Consensus 465 ~~~~~~~~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~---------~~~~~~l~~l~~~l~--d~~~~vR 531 (626)
..... ....+++.+.+.+.+ ........+++++|..+..+... .....+.+.+..+++ ..++.||
T Consensus 451 ~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr 528 (618)
T 1w63_A 451 TNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTR 528 (618)
T ss_dssp HHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHH
T ss_pred hcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 76442 345566777776653 23445557899999987643210 011234444444443 5688999
Q ss_pred HHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHH
Q 006898 532 FNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYC 590 (626)
Q Consensus 532 ~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~ 590 (626)
..++.++.++....+. ..+.+...|. ....|.|.+||. .|...+.-+
T Consensus 529 ~~~lta~~Kl~~~~~~--~~~~l~~~L~-~~~~~~d~evrd---------RA~~y~~ll 575 (618)
T 1w63_A 529 GYALTAIMKLSTRFTC--TVNRIKKVVS-IYGSSIDVELQQ---------RAVEYNALF 575 (618)
T ss_dssp HHHHHHHHHHHTTCSS--CHHHHHHHHH-HHTTCSCHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc--hHHHHHHHHH-HhcCCCCHHHHH---------HHHHHHHHH
Confidence 9999999999887643 3456777777 888899999999 777766554
No 31
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.80 E-value=1.3e-16 Score=168.58 Aligned_cols=508 Identities=11% Similarity=0.056 Sum_probs=324.9
Q ss_pred HHHHHHHhcC---ccHHHHHHHHhhHHHHHHhhChHhhhhhhcccc-ccccCCchHHHHHHHHHHhccccccCCcchhhc
Q 006898 11 IAVLIDELKN---DDIQLRLNSIRRLSTIARALGEERTRKELIPFL-SENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (626)
Q Consensus 11 i~~l~~~l~s---~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l-~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~ 86 (626)
++.+-+.|++ .|...|..+++.+-.+ ..+|.+. ..+.+.+ ..+.+++.+.|+.+--.+..+++ +.++....
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l-~~~G~d~--s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~--~~~e~~~L 111 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFI-FLLGHDI--DFGHMEAVNLLSSNRYTEKQIGYLFISVLVN--SNSELIRL 111 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHH-HHHSCCC--CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCC--CCHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCCCC--chhHHHHHHHhcCCCHHHHHHHHHHHHHHcc--CCcHHHHH
Confidence 3344444543 2455555555555544 3334321 1222222 22457788888888888887766 23444444
Q ss_pred chHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHh--cCCccchhHHHhhHhHHhcCCCChHHH-HH
Q 006898 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA--AGEWFTARVSACGLFHIAYPSAPDILK-TE 163 (626)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~--~~~~~~~r~~a~~~l~~~~~~~~~~~~-~~ 163 (626)
+++.+.+=++|+++.+|-.|+.+++.+.. ..+.+.+.|.+.+++ .|.++.+|..|+.++..++...++... +.
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~ 187 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGD 187 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchh
Confidence 55666666778999999999999998843 235567888888888 888999999999999888875543222 26
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCC-------------chhHHHHHHHHHHH
Q 006898 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDD-------------QDSVRLLAVEGCAA 228 (626)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~-------------~~~vr~~a~~~l~~ 228 (626)
+.+.+..+++|+++.|+.+++.++..++..-+.. ...+.++..+.+++.+. ++-.+...++.+..
T Consensus 188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~ 267 (621)
T 2vgl_A 188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC 267 (621)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence 7888888999999999999999999988754321 12334445555554322 45566666666665
Q ss_pred hhcccCchhhhhhhHHHHHHhc---CC-C----------CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChH
Q 006898 229 LGKLLEPQDCVAHILPVIVNFS---QD-K----------SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 294 (626)
Q Consensus 229 l~~~~~~~~~~~~i~~~l~~~~---~d-~----------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 294 (626)
++..-.+ .....+.+.+...+ .+ + ...|...++.++..+. +...........+..++.+.++
T Consensus 268 ~~~~~d~-~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~ 343 (621)
T 2vgl_A 268 YPPPEDP-AVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRET 343 (621)
T ss_dssp SSSCSSH-HHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCH
T ss_pred hCCCCCH-HHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCc
Confidence 5432111 22233333333322 11 1 1144444555544432 2122234567777888888899
Q ss_pred HHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHH
Q 006898 295 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD 373 (626)
Q Consensus 295 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 373 (626)
++|..++.++..++...+.........+.+...+. |++..+|..+++.+..++.. ...+.++..+...+.+.+.+
T Consensus 344 niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~ 419 (621)
T 2vgl_A 344 NLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYS 419 (621)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHH
T ss_pred chHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHH
Confidence 99999999999998755422233555666666666 99999999999998888643 34567778888888888999
Q ss_pred HHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCc--hH
Q 006898 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV--YS 451 (626)
Q Consensus 374 vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~--~~ 451 (626)
.|..++.+++.++..+.++. +..+..+.+++.+....+...++..+..+..... ......+..+...+.|+. ..
T Consensus 420 ~~~~~v~~I~~la~k~~~~~--~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~ 495 (621)
T 2vgl_A 420 IREEIVLKVAILAEKYAVDY--TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHEN 495 (621)
T ss_dssp HHHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCHH
T ss_pred HHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcCccchHH
Confidence 99999999999988775443 3456666666554333344444445554443332 122334555666777664 34
Q ss_pred HHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCC--CCC
Q 006898 452 IRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK--DRV 527 (626)
Q Consensus 452 VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~--d~~ 527 (626)
+-..+++.+|..+....... ....++..+.+.+.+.+..+|..++.++.++....+. ..+.+...|..... |.+
T Consensus 496 li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d 573 (621)
T 2vgl_A 496 LVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNAD 573 (621)
T ss_dssp HHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSS
T ss_pred HHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCC
Confidence 55677799999876543210 0124455666677788999999999999998765432 23445555555555 999
Q ss_pred chHHHHHHHHHHHH
Q 006898 528 PNIKFNVAKVLQSL 541 (626)
Q Consensus 528 ~~vR~~a~~~l~~i 541 (626)
++||..|..-+.-+
T Consensus 574 ~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 574 VELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998776655
No 32
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.78 E-value=3.6e-16 Score=165.23 Aligned_cols=539 Identities=11% Similarity=0.033 Sum_probs=349.2
Q ss_pred CCCcccHHHHHHHhcCcc--HHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchH-HHHHHHHHHhccccccCCc
Q 006898 5 DEPLYPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDE-VLLAMAEELGVFIPYVGGV 81 (626)
Q Consensus 5 ~~~~~~i~~l~~~l~s~d--~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~-vr~~~~~~l~~~~~~~~~~ 81 (626)
.+++..+..++..+++.. .++|...-+.+.++-..+ ..-...++. .+.++.+.+.-... | .
T Consensus 7 ~~~~~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~-------------~~~~~~~~~~k~~~l~Kli~l~~~--G-~ 70 (621)
T 2vgl_A 7 GEGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKF-------------KGDKALDGYSKKKYVCKLLFIFLL--G-H 70 (621)
T ss_dssp --CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH-------------HSSSCCCHHHHHHHHHHHHHHHHH--S-C
T ss_pred CCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-------------hcCCCCCHHHHHHHHHHHHHHHHc--C-C
Confidence 456677778887776443 234444444444442222 110112333 34444555444332 3 2
Q ss_pred chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHH
Q 006898 82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK 161 (626)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~ 161 (626)
+.. ...+-..+++++++...|+.+--++..+.+.-+ +..-.+...+.+-++++++.+|..|...++.+.. ++..
T Consensus 71 d~s-~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~--e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~ 144 (621)
T 2vgl_A 71 DID-FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS--ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMA 144 (621)
T ss_dssp CCC-SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH--HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHH
T ss_pred CCc-hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHH
Confidence 222 333334457778889999988877777665422 2223356677777788899999999999998853 6778
Q ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHhHHHHHHhhCccchh-hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch--
Q 006898 162 TELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEPAHLK-TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-- 236 (626)
Q Consensus 162 ~~l~~~l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-- 236 (626)
+.+.+.+.+++ .|.++.||+.|+.++..+....+. ... +.+.+.+.+++.|+++.|+.+|+.++..++..-+..
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~ 223 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK 223 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH
Confidence 88999999999 999999999999999999985432 221 268889999999999999999999999887654331
Q ss_pred hhhhhhHHHHHHhcCCC-------------CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc---CC-C-------
Q 006898 237 DCVAHILPVIVNFSQDK-------------SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL---RD-N------- 292 (626)
Q Consensus 237 ~~~~~i~~~l~~~~~d~-------------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d-~------- 292 (626)
...+.++..+.+++.+. ++..+....+.++.++.. +.....+.+.+.+..++ .+ +
T Consensus 224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~ 302 (621)
T 2vgl_A 224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPPKSKKVQH 302 (621)
T ss_dssp THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCcccccccc
Confidence 23344445555543221 455666666665544311 00011112223222222 11 1
Q ss_pred -h--HHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc-
Q 006898 293 -E--AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK- 368 (626)
Q Consensus 293 -~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~- 368 (626)
+ ..|..+|++++-.+. +...+.......+..++.++++.+|..++..+..+....+.........+.++.+++
T Consensus 303 ~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~ 379 (621)
T 2vgl_A 303 SNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKT 379 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhcc
Confidence 2 255556666555442 233444666778888888899999999999999998765422334455677888888
Q ss_pred CCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC
Q 006898 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK 448 (626)
Q Consensus 369 d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~ 448 (626)
|++..||..++..+..++..-. .+.++..+.+.+.+.+...|..++..++.++..+.+.. +..+..+..++.+.
T Consensus 380 d~d~~Ir~~aL~lL~~l~~~~N----v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~--~~~v~~Ll~ll~~~ 453 (621)
T 2vgl_A 380 ERDVSVRQRAVDLLYAMCDRSN----AQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY--TWYVDTILNLIRIA 453 (621)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHcChhh----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhh
Confidence 9999999999999888764321 25678888888888889999999999999987765432 34566777777665
Q ss_pred chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCCh--HHHHHHHHHHHHhccccChHH-h-hhcHHHHHhhhCC
Q 006898 449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY--LYRMTILRAISLLAPVMGSEI-T-CSRLLPVVINASK 524 (626)
Q Consensus 449 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~--~vR~~a~~~l~~i~~~~~~~~-~-~~~~l~~l~~~l~ 524 (626)
...+...+...+..++..... .....+..+.+.+.++.. .+-..+++.+|..+....... . ...++..+.....
T Consensus 454 ~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~ 531 (621)
T 2vgl_A 454 GDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH 531 (621)
T ss_dssp GGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc
Confidence 555666666666666654322 344566677777777653 344567799998876443211 0 1234556666667
Q ss_pred CCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhcc--CCCcccccccccCchhHHHHHHHHHH
Q 006898 525 DRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLN--VNNFNVGFIFAAFPLVLFSCLALNYC 590 (626)
Q Consensus 525 d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~--d~d~~vr~~~~~~~~~~~a~~al~~~ 590 (626)
+.++.||..++.++.++....+. ..+.+...|. .... |.|.+||. .|..-+.-+
T Consensus 532 ~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~-~~~~~~~~d~evrd---------RA~~y~~Ll 587 (621)
T 2vgl_A 532 LCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLR-SDSQLKNADVELQQ---------RAVEYLRLS 587 (621)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHS-SHHHHSCSSHHHHH---------HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHH-HHhcCCCCCHHHHH---------HHHHHHHHH
Confidence 88899999999999999776532 3345555555 6666 99999999 777765544
No 33
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.78 E-value=9.5e-17 Score=166.91 Aligned_cols=377 Identities=11% Similarity=0.077 Sum_probs=257.0
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCC---C
Q 006898 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---E 275 (626)
Q Consensus 204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~ 275 (626)
++-+.+.+++++.+.+..|...+..+...-.. ..+...++|.+.+++. +.++.++..++.+|+.++..... .
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34445555666666666666666655432211 2233446666666664 34566777777777776532100 0
Q ss_pred ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---hHHHHHhhHHHHHHhccCCC-----HHHHHHHHHHHHhhh
Q 006898 276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSS-----QHVRSALASVIMGMA 347 (626)
Q Consensus 276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~l~~d~~-----~~vr~~~~~~l~~l~ 347 (626)
......+|.+..+++++++++|..|+.+|+.++..-. ........++.+..++.+++ ..+.+.+..++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 1123467888888888888888888888888865321 11223455677777766543 345566666777666
Q ss_pred hhhc---HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 006898 348 PLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (626)
Q Consensus 348 ~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l 421 (626)
..-. .-.....++|.+..++.+.++.++..++.+|..+...-... .....++|.+.+++.+++..++..++.++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 4321 12234568899999999999999999999999887542211 11245788999999999999999999999
Q ss_pred HHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHH
Q 006898 422 PLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTI 495 (626)
Q Consensus 422 ~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a 495 (626)
..++..... .......+|.+..++.+++..+|..|+++|+.++..... ......++|.+..++.++++.+|..+
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 988643211 112234567788889999999999999999999753211 12335689999999999999999999
Q ss_pred HHHHHHhccccChHH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---c-hh-----hhcccchHHhhh
Q 006898 496 LRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S-VS-----TFSVSPFSFMLY 562 (626)
Q Consensus 496 ~~~l~~i~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~-~~-----~~~i~~~l~~~l 562 (626)
+.++.+++.....+. ....+++.|..+++++++.++..++++|.++...... . .+ ....+..+. .+
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie-~L 457 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE-AL 457 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHH-HG
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHH-HH
Confidence 999999987655442 2456889999999999999999999999998865432 1 11 123456677 78
Q ss_pred ccCCCcccccccccCchhHHHHHHHHHH
Q 006898 563 LNVNNFNVGFIFAAFPLVLFSCLALNYC 590 (626)
Q Consensus 563 ~~d~d~~vr~~~~~~~~~~~a~~al~~~ 590 (626)
..+++.+|+. .|...++++
T Consensus 458 q~~~n~~i~~---------~A~~iie~y 476 (510)
T 3ul1_B 458 QRHENESVYK---------ASLNLIEKY 476 (510)
T ss_dssp GGCSSHHHHH---------HHHHHHHHH
T ss_pred HcCCCHHHHH---------HHHHHHHHH
Confidence 8889999988 777777766
No 34
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.77 E-value=2.3e-16 Score=163.96 Aligned_cols=378 Identities=10% Similarity=0.073 Sum_probs=279.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc----hhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCc---hh
Q 006898 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP---QD 237 (626)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---~~ 237 (626)
+.+.+.+.+.+..++..|+..+.++...-..+. +...++|.|.+++++. ++.++..|+.+|.+++....+ ..
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 344566788889999999999988775443322 2345789999998754 578999999999999865443 12
Q ss_pred hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHHH
Q 006898 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNE-----AEVRIAAAGKVTKFCR 309 (626)
Q Consensus 238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~ 309 (626)
.....+|.+..++.+++..+|..++.+|+.++.... ........++.+..++.+.+ ..+...+..++..++.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 344578999999999999999999999999974211 11122356788888887544 3456677778877776
Q ss_pred hhCh---HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHHHHhhH
Q 006898 310 ILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (626)
Q Consensus 310 ~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~ 383 (626)
.-.. ......++|.+.+++.+.++.++..++.++..++..-... .....++|.+..++.+.+..++..++.+++
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~ 299 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 299 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence 3321 1234678899999999999999999999999987543211 112346889999999999999999999999
Q ss_pred HHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchHHHHHHH
Q 006898 384 QVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAA 457 (626)
Q Consensus 384 ~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~ 457 (626)
.+...-... ......++.+..++.+++..+|..++.++..++.... .......++|.+..++.+.+..+|..|+
T Consensus 300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa 379 (510)
T 3ul1_B 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379 (510)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence 986432211 1223456777888899999999999999999875322 1123345889999999999999999999
Q ss_pred HHHHHHHHHhChHH----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc---cCh-HHh-----hhcHHHHHhhhCC
Q 006898 458 NNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGS-EIT-----CSRLLPVVINASK 524 (626)
Q Consensus 458 ~~l~~l~~~~~~~~----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~---~~~-~~~-----~~~~l~~l~~~l~ 524 (626)
++|+.++.....+. .....++.|.+++..++..++..++.++.++.+. .+. +.+ ....+..+..+..
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~ 459 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 459 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence 99999987644432 2366899999999999999999999999998753 222 111 2245667778888
Q ss_pred CCCchHHHHHHHHHHHHHh
Q 006898 525 DRVPNIKFNVAKVLQSLIP 543 (626)
Q Consensus 525 d~~~~vR~~a~~~l~~i~~ 543 (626)
+++.+|+..|.+.|.+.+.
T Consensus 460 ~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 460 HENESVYKASLNLIEKYFS 478 (510)
T ss_dssp CSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 9999999999999888664
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.77 E-value=2.2e-16 Score=165.27 Aligned_cols=377 Identities=11% Similarity=0.081 Sum_probs=254.6
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCC---C
Q 006898 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---E 275 (626)
Q Consensus 204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~ 275 (626)
++.+.+.+.+++++.+..|+..+..+...-.. ..+...++|.+..++. +.++.++..++.+|+.++..... .
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444445555555555555555544322111 1223445666655553 34466666666666666532110 0
Q ss_pred ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---hHHHHHhhHHHHHHhccCCC-----HHHHHHHHHHHHhhh
Q 006898 276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSS-----QHVRSALASVIMGMA 347 (626)
Q Consensus 276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~l~~d~~-----~~vr~~~~~~l~~l~ 347 (626)
......+|.+..++.++++++|..|+.+|+.++..-. ........++.+..++.+++ ..+...++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 1123467888888888888888888888888764211 11223445677777776543 345566666777665
Q ss_pred hhhc---HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 006898 348 PLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (626)
Q Consensus 348 ~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l 421 (626)
..-. .......++|.+..++.+.++.++..++.+|..+....... .....++|.+.+++.++++.++..++.++
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 4321 12234568899999999999999999999999887542211 12245788999999999999999999999
Q ss_pred HHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHH
Q 006898 422 PLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTI 495 (626)
Q Consensus 422 ~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a 495 (626)
..++..... .......+|.+..++.+++..+|..|+++|+.++..... ......++|.+..++.+++..+|..|
T Consensus 318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence 988743211 122344678889999999999999999999999753211 12345689999999999999999999
Q ss_pred HHHHHHhccccChHH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---c-hh-----hhcccchHHhhh
Q 006898 496 LRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S-VS-----TFSVSPFSFMLY 562 (626)
Q Consensus 496 ~~~l~~i~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~-~~-----~~~i~~~l~~~l 562 (626)
+.++++++.....+. ....+++.|..++..+++.++..++++|..+...... . .+ ....+..+. .+
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie-~L 476 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE-AL 476 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHT-GG
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHH-HH
Confidence 999999987655442 2456889999999999999999999999998765322 1 11 123456666 78
Q ss_pred ccCCCcccccccccCchhHHHHHHHHHH
Q 006898 563 LNVNNFNVGFIFAAFPLVLFSCLALNYC 590 (626)
Q Consensus 563 ~~d~d~~vr~~~~~~~~~~~a~~al~~~ 590 (626)
..+++.+|+. .|...++++
T Consensus 477 q~~~n~~i~~---------~A~~iie~y 495 (529)
T 3tpo_A 477 QRHENESVYK---------ASLNLIEKY 495 (529)
T ss_dssp GGCSSHHHHH---------HHHHHHHHH
T ss_pred HcCCCHHHHH---------HHHHHHHHH
Confidence 8888999999 887777776
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.77 E-value=4e-16 Score=163.22 Aligned_cols=378 Identities=11% Similarity=0.078 Sum_probs=274.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc----hhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCc---hh
Q 006898 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP---QD 237 (626)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~---~~ 237 (626)
+.+.+.+.++++..+..++..+..+...-..+. ....++|.|.+++.. +++.++..|+.+|..++..... ..
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344556677778888888888877654333221 234578888888854 4578888899999988865443 22
Q ss_pred hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHHH
Q 006898 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNE-----AEVRIAAAGKVTKFCR 309 (626)
Q Consensus 238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~ 309 (626)
.....+|.+..++.+++..+|..++.+|+.++... .........++.++.++.+.+ ..+...+..++..++.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 34567888889999999999999999999887421 011122346788888887543 3456677777777765
Q ss_pred hhCh---HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHHHHhhH
Q 006898 310 ILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (626)
Q Consensus 310 ~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~ 383 (626)
.-.+ ......++|.+.+++.+.+..++..++.++..++...... .....++|.+..++.+++..++..++.+++
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 3321 1334678899999999999999999999998887543211 112347888999999999999999999999
Q ss_pred HHHhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHH
Q 006898 384 QVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAA 457 (626)
Q Consensus 384 ~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~ 457 (626)
.+...-.. .......++.+..++.+++..+|..++.++..++..... ......++|.+..++.+.+..+|..|+
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~ 398 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA 398 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Confidence 98643211 112345678888999999999999999999998753221 123345889999999999999999999
Q ss_pred HHHHHHHHHhChHH----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc---cCh-HHh-----hhcHHHHHhhhCC
Q 006898 458 NNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGS-EIT-----CSRLLPVVINASK 524 (626)
Q Consensus 458 ~~l~~l~~~~~~~~----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~---~~~-~~~-----~~~~l~~l~~~l~ 524 (626)
++|+.++.....+. ....+++.|.+++..++..++..++.++.++.+. .+. +.+ ....+..+..+..
T Consensus 399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~ 478 (529)
T 3tpo_A 399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 478 (529)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHc
Confidence 99999987654432 2356899999999999999999999999998753 221 111 1234667778888
Q ss_pred CCCchHHHHHHHHHHHHHh
Q 006898 525 DRVPNIKFNVAKVLQSLIP 543 (626)
Q Consensus 525 d~~~~vR~~a~~~l~~i~~ 543 (626)
+++.+|+..|.+.|.+.+.
T Consensus 479 ~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 479 HENESVYKASLNLIEKYFS 497 (529)
T ss_dssp CSSHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 9999999999999888654
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.74 E-value=1.5e-16 Score=152.29 Aligned_cols=255 Identities=15% Similarity=0.065 Sum_probs=189.9
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhh
Q 006898 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320 (626)
Q Consensus 241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 320 (626)
..++.+...+.|+++.+|..++.+|+.+. ....++.+..+++|+++.+|..|+.+|+.+... ......+
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~---~~~~~~l 91 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC---KKCEDNV 91 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC---TTTHHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---cccchHH
Confidence 35667777888889999999888888765 245778888888998899999999888776531 1112345
Q ss_pred HHHHH-HhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHH
Q 006898 321 LPCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (626)
Q Consensus 321 ~~~l~-~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~ 399 (626)
++.+. .+.+|+++.||..++.+++.++...+ ...+.+++.+...++|+++.||..++.+|+.+.. ...+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence 56665 35678899999999999888864321 1234567888888999999999999999987643 2467
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHH
Q 006898 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 479 (626)
Q Consensus 400 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~ 479 (626)
|.+.+.++|+++.+|..++.+++.+... .+..+|.+...+.|+++.||..|+.+|+.+. ....+|.
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~ 227 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSV 227 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHH
Confidence 8888888999999999999988776311 1346778888889999999999999988774 2346788
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCC-CCchHHHHHHHHHHH
Q 006898 480 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQS 540 (626)
Q Consensus 480 l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~ 540 (626)
+.+.+.|++ +|..++.+++.+.. +..+|.|..++++ ++++++..+.+.+.+
T Consensus 228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 888887765 88899999998764 3567778877754 567788777777653
No 38
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.74 E-value=1.2e-16 Score=152.92 Aligned_cols=247 Identities=19% Similarity=0.112 Sum_probs=193.4
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhH
Q 006898 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 359 (626)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 359 (626)
..++.+...++|+++.+|..|+.+|+.+.. +..++.+.++++|+++.+|..++.+++.+.... .....+
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~---~~~~~l 91 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---KCEDNV 91 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---TTHHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---ccchHH
Confidence 457888899999999999999999998763 445788888889999999999999998886321 123346
Q ss_pred HHHHH-HhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 006898 360 LPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 438 (626)
Q Consensus 360 ~~~l~-~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~ 438 (626)
++.+. .+++|+++.||..++.+|+.+....+. ....+++.+.+.++|+++.+|..++.+++.+.. +..+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence 66666 357899999999999999998743221 124678899999999999999999999987643 2367
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHH
Q 006898 439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV 518 (626)
Q Consensus 439 p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~ 518 (626)
|.+...+.|+++.||..|+.+|+.+.. .....+|.+.++++|+++.+|..++.+++.+.. +..+|.
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~ 227 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSV 227 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHH
Confidence 788889999999999999999988731 123578889999999999999999999998862 456778
Q ss_pred HhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhcc-CCCccccc
Q 006898 519 VINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLN-VNNFNVGF 572 (626)
Q Consensus 519 l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~-d~d~~vr~ 572 (626)
|...++|++ ||..++.+|+.+.. +..+|.|. .++. +++.+++.
T Consensus 228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~-~~l~~~~~~~~~~ 271 (280)
T 1oyz_A 228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLD-TMLYKFDDNEIIT 271 (280)
T ss_dssp HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHH-HHHTTSSCCHHHH
T ss_pred HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHH-HHHhcCCCcHHHH
Confidence 888887754 99999999998743 36778888 6654 45555554
No 39
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.73 E-value=6.1e-14 Score=157.69 Aligned_cols=527 Identities=10% Similarity=0.040 Sum_probs=323.9
Q ss_pred cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccC---------C
Q 006898 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVG---------G 80 (626)
Q Consensus 10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~---------~ 80 (626)
.+..+++...|+|...| |-+.|..+ .. .|+ ....+...+.. .+.+.++|..++..+.+.+..-- .
T Consensus 6 ~l~~~L~~~~spd~~~r--Ae~~L~~~-~~-~p~-~~~~L~~il~~-~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~ 79 (960)
T 1wa5_C 6 TVAKFLAESVIASTAKT--SERNLRQL-ET-QDG-FGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP 79 (960)
T ss_dssp HHHHHHHHTTSGGGHHH--HHHHHHHH-HT-STT-HHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSC
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHh-hc-CCC-HHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCC
Confidence 35566666778898888 88777766 22 222 22233333321 23467899999999987654210 0
Q ss_pred cchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC---
Q 006898 81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP--- 157 (626)
Q Consensus 81 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~--- 157 (626)
++....+-..+...+.+++..+|..+..++..|+..--+ .-++.++|.+.+.+++.+...+..+..++..+++...
T Consensus 80 ~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~ 158 (960)
T 1wa5_C 80 ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF 158 (960)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 111222222222222234588999999999999886444 2457788998888887777778888888888776432
Q ss_pred --hHHH-------HH----HHHHHHH---hcCCCCH---HHH------HHHHHhHHHHHHhhCccch---hhhHHHHHHH
Q 006898 158 --DILK-------TE----LRSIYTQ---LCQDDMP---MVR------RSAASNLGKFAATVEPAHL---KTDIMSIFED 209 (626)
Q Consensus 158 --~~~~-------~~----l~~~l~~---l~~d~~~---~vR------~~a~~~l~~l~~~~~~~~~---~~~ll~~l~~ 209 (626)
++.. .. ++..+.. .+.++.. .+| ..+++++..+...--++.. ...+.+.+..
T Consensus 159 ~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (960)
T 1wa5_C 159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHK 238 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 1111 11 2233322 2444322 233 3344555443321112111 2334455554
Q ss_pred hhcC----------Cc-----hhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcC-----CCCHHHHHHHHHHHHH
Q 006898 210 LTQD----------DQ-----DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQ-----DKSWRVRYMVANQLYE 267 (626)
Q Consensus 210 l~~d----------~~-----~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~-----d~~~~vR~~a~~~l~~ 267 (626)
.+.. ++ +.+|+.+++++..+.+..++ ..+.+.+++.+...+. ..+..++..+++.+..
T Consensus 239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 4421 11 35788889999888766554 2233444444444332 3456788888888877
Q ss_pred HHHHhC-CC-----ccccchH-HHHHHhcC-----------------------CChHHHHHHHHHhHHHHHHhhChHHHH
Q 006898 268 LCEAVG-PE-----PTRMDLV-PAYVRLLR-----------------------DNEAEVRIAAAGKVTKFCRILNPELAI 317 (626)
Q Consensus 268 l~~~~~-~~-----~~~~~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~ 317 (626)
+++.-. .. .....++ +.++..+. +.....|.+|...+..++...+ +.+.
T Consensus 319 ~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~ 397 (960)
T 1wa5_C 319 VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVT 397 (960)
T ss_dssp HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHH
T ss_pred HhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHH
Confidence 653210 01 1112233 23332221 1113578899999999998877 4455
Q ss_pred HhhHHHHHHhcc------CCCHHHHHHHHHHHHhhhhhh-----cHH------HHHHhHHHHHHHhhcCC---CHHHHHH
Q 006898 318 QHILPCVKELSS------DSSQHVRSALASVIMGMAPLL-----GKD------ATIEQLLPIFLSLLKDE---FPDVRLN 377 (626)
Q Consensus 318 ~~l~~~l~~l~~------d~~~~vr~~~~~~l~~l~~~~-----~~~------~~~~~l~~~l~~~l~d~---~~~vr~~ 377 (626)
+.+++.+.+.+. +.+|+.|.+++.+++.++... +.. .+.+.+...+...+.|+ .+-||..
T Consensus 398 ~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~ 477 (960)
T 1wa5_C 398 NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVD 477 (960)
T ss_dssp HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHH
Confidence 677777766655 678999999999999997532 111 22222334455566777 8999999
Q ss_pred HHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC----------hh---hHHHHHHHHHHHH
Q 006898 378 IISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----------VG---FFDDKLGALCMQW 444 (626)
Q Consensus 378 a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~----------~~---~~~~~l~p~l~~~ 444 (626)
++.+++.+.+.+.++. ...+++.+.+.+.|++.++|..++.++..+++... .+ .+.+.+++.++.+
T Consensus 478 a~~~lg~~~~~~~~~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~l 556 (960)
T 1wa5_C 478 AIKYIYTFRNQLTKAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL 556 (960)
T ss_dssp HHHHHHHTGGGSCHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHH
Confidence 9999999999886544 47789999999999999999999999999887422 22 2345566667777
Q ss_pred hcCCc-----hHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhh----hcC-CChHHHHHHHHHHHHhccccChH---
Q 006898 445 LQDKV-----YSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEM----INN-PHYLYRMTILRAISLLAPVMGSE--- 509 (626)
Q Consensus 445 l~d~~-----~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~----l~~-~~~~vR~~a~~~l~~i~~~~~~~--- 509 (626)
++... ......+..+++.++..+++.. +...+++.+... .++ .+...+..++++++.++...+++
T Consensus 557 l~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~ 636 (960)
T 1wa5_C 557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP 636 (960)
T ss_dssp HHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred HHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH
Confidence 66531 1134578888999888876542 223444444443 233 46678888999999998875543
Q ss_pred HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh
Q 006898 510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (626)
Q Consensus 510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 545 (626)
.+.+.++|.+...+.....+....+...++.+....
T Consensus 637 ~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 637 LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 356788999888887777788888888888887664
No 40
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.73 E-value=2.7e-14 Score=160.49 Aligned_cols=402 Identities=11% Similarity=0.073 Sum_probs=254.7
Q ss_pred CCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccC
Q 006898 155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (626)
Q Consensus 155 ~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 234 (626)
..+++.+..+...++..+.+++..||..++.+++.++..-.+ ..|+.++|.+.+.++++++..+..++.++..+.+...
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777766666689999999999999987655 4678999999999988888889999999999988654
Q ss_pred c-----hh------hhhhhH----HHHHH---hcCCCCH---HHH------HHHHHHHHHHHHHhCCCcc---ccchHHH
Q 006898 235 P-----QD------CVAHIL----PVIVN---FSQDKSW---RVR------YMVANQLYELCEAVGPEPT---RMDLVPA 284 (626)
Q Consensus 235 ~-----~~------~~~~i~----~~l~~---~~~d~~~---~vR------~~a~~~l~~l~~~~~~~~~---~~~l~~~ 284 (626)
. +. ...... ..+.. .+.+... .+| ..+++++..+...--.+.. ....++.
T Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~ 235 (960)
T 1wa5_C 156 PLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGI 235 (960)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHH
T ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 2 10 111112 22222 2444322 233 2344444433211001111 1234455
Q ss_pred HHHhcCC-----------Ch----HHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhcc-----CCCHHHHHHHHHH
Q 006898 285 YVRLLRD-----------NE----AEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSS-----DSSQHVRSALASV 342 (626)
Q Consensus 285 l~~~l~d-----------~~----~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~-----d~~~~vr~~~~~~ 342 (626)
+.+.+.. .+ +.+|..+++++..+.+..+.. .+.+.+++.+.+.+. ..+..++..+++.
T Consensus 236 ~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~f 315 (960)
T 1wa5_C 236 FHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSF 315 (960)
T ss_dssp HHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHH
T ss_pred HHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 5554421 11 357888888888887654432 122334444433332 4567888888888
Q ss_pred HHhhhhh------hcHHHHHHhHH-HHHHHhhc----C-------------------CCHHHHHHHHHhhHHHHhhhchh
Q 006898 343 IMGMAPL------LGKDATIEQLL-PIFLSLLK----D-------------------EFPDVRLNIISKLDQVNQVIGID 392 (626)
Q Consensus 343 l~~l~~~------~~~~~~~~~l~-~~l~~~l~----d-------------------~~~~vr~~a~~~L~~~~~~~~~~ 392 (626)
+..+++. +....+...++ +.++..+. | ...++|.+|...|..++..++ +
T Consensus 316 l~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~ 394 (960)
T 1wa5_C 316 LTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-V 394 (960)
T ss_dssp HHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-H
T ss_pred HHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-h
Confidence 8877642 11113444455 45554431 1 123578899999999998887 4
Q ss_pred hHHhhHHHHHHHHhc------CCChHHHHHHHHHHHHHHHhh-----Chh------hHHHHHHHHHHHHhcCC---chHH
Q 006898 393 LLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQL-----GVG------FFDDKLGALCMQWLQDK---VYSI 452 (626)
Q Consensus 393 ~~~~~i~~~l~~~~~------~~~~~~r~~~~~~l~~l~~~~-----~~~------~~~~~l~p~l~~~l~d~---~~~V 452 (626)
.....+++.+.+.+. +.+|+.|.+++.+++.++... +.. .+.+.+...+...+.|+ ++.|
T Consensus 395 ~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~v 474 (960)
T 1wa5_C 395 LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIIL 474 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHH
T ss_pred hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCcee
Confidence 344566677666655 678999999999999998642 111 23333444455566777 8999
Q ss_pred HHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC----------hH---HhhhcHHHHH
Q 006898 453 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG----------SE---ITCSRLLPVV 519 (626)
Q Consensus 453 R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~----------~~---~~~~~~l~~l 519 (626)
|..|+++++.++..+.++ ....+++.+.+.+.|++..||..|+.++..+++... .+ .+.+.+++.|
T Consensus 475 r~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L 553 (960)
T 1wa5_C 475 RVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNL 553 (960)
T ss_dssp HHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHH
Confidence 999999999999887544 567788999998999999999999999999987422 22 3456667777
Q ss_pred hhhCCCCC-----chHHHHHHHHHHHHHhhhccc--hhhhcccchHH
Q 006898 520 INASKDRV-----PNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSF 559 (626)
Q Consensus 520 ~~~l~d~~-----~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~ 559 (626)
..+++... ......+..+++.++...++. ++...+.+.+.
T Consensus 554 ~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~ 600 (960)
T 1wa5_C 554 IALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFI 600 (960)
T ss_dssp HHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHH
T ss_pred HHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77665531 113467888998888877653 33334444444
No 41
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.67 E-value=3.8e-14 Score=160.11 Aligned_cols=441 Identities=10% Similarity=-0.003 Sum_probs=253.7
Q ss_pred cchHHHHHHHHHHHHHHh----hcCh---hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHH
Q 006898 98 EETCVRDKAVESLCRIGS----QMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (626)
Q Consensus 98 ~~~~vR~~a~~~l~~i~~----~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ 170 (626)
.++.+|..|+..|....+ .+++ ..+++.++..+.....+ ...+|...+.+++.++.+..+ .++++++.+..
T Consensus 52 ~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~ 129 (971)
T 2x1g_F 52 KSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG-EWPGAIEEVIN 129 (971)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC-C------HHHH
T ss_pred CcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc-cccHHHHHHHH
Confidence 344555555555544332 1222 22333444444433322 234555555555554443222 44445555544
Q ss_pred hcCCC------CHHHHHHHHHhHHHHHHhhC-c-------------cchhhhHHHHHHHhhcCCc--------hhHHHHH
Q 006898 171 LCQDD------MPMVRRSAASNLGKFAATVE-P-------------AHLKTDIMSIFEDLTQDDQ--------DSVRLLA 222 (626)
Q Consensus 171 l~~d~------~~~vR~~a~~~l~~l~~~~~-~-------------~~~~~~ll~~l~~l~~d~~--------~~vr~~a 222 (626)
.++.+ ++..+..+...|..+.+... . ....+.+++.+...+.+.+ +.++..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~a 209 (971)
T 2x1g_F 130 TFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRA 209 (971)
T ss_dssp HHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHH
Confidence 44332 34455555555555553210 0 0112345555555554321 2789999
Q ss_pred HHHHHHhhc--ccCchhhhhhhHHHHHHhc----------------CCCCHHHHHHHHHHHHHHHHHhCCC---ccccch
Q 006898 223 VEGCAALGK--LLEPQDCVAHILPVIVNFS----------------QDKSWRVRYMVANQLYELCEAVGPE---PTRMDL 281 (626)
Q Consensus 223 ~~~l~~l~~--~~~~~~~~~~i~~~l~~~~----------------~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l 281 (626)
++++..+.. ..+.. ....+++.+.. + .+.++.+|..+++++..+....... .....+
T Consensus 210 l~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 210 VKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 999988776 34444 45566676554 2 1245789999999999988642111 011234
Q ss_pred HHHHHH-------hcCCCh---HHHHHHHHHhHHHHHHh----hC---------hHHHHHhhHHHHHHhccC-----CCH
Q 006898 282 VPAYVR-------LLRDNE---AEVRIAAAGKVTKFCRI----LN---------PELAIQHILPCVKELSSD-----SSQ 333 (626)
Q Consensus 282 ~~~l~~-------~l~d~~---~~vr~~a~~~l~~l~~~----~~---------~~~~~~~l~~~l~~l~~d-----~~~ 333 (626)
+|.+.. ...+.+ .+......+.+..+++. +. .......+++.+...... .++
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~ 367 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEE 367 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTC
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcch
Confidence 444433 223334 26666666666666532 11 111223445555554433 467
Q ss_pred HHHHHHHHHHHhhhhhh-c-----H--------HHHHHhHHHHHHHhhc---CC-----C-------HHHHHHHHHhhHH
Q 006898 334 HVRSALASVIMGMAPLL-G-----K--------DATIEQLLPIFLSLLK---DE-----F-------PDVRLNIISKLDQ 384 (626)
Q Consensus 334 ~vr~~~~~~l~~l~~~~-~-----~--------~~~~~~l~~~l~~~l~---d~-----~-------~~vr~~a~~~L~~ 384 (626)
.++..++..+..+++.. + + ..+...+++.+...+. |. + ...|..+...+..
T Consensus 368 ~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~ 447 (971)
T 2x1g_F 368 SCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMY 447 (971)
T ss_dssp TTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHH
Confidence 88888888888776522 1 0 1223345555555442 11 1 2567888888888
Q ss_pred HHhhhchhhHHhhHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHh-cCCchHHHHHH
Q 006898 385 VNQVIGIDLLSQSLLPAIVELAED-----RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAA 456 (626)
Q Consensus 385 ~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l-~d~~~~VR~~a 456 (626)
++...+.+ ....+++.+.+.+.. .+|+.|.+++.+++.+++.+.... ..+.+++.+..+. .|+++.||..+
T Consensus 448 ~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a 526 (971)
T 2x1g_F 448 CYDVLNDY-ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTA 526 (971)
T ss_dssp HHTTCTTH-HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred HHHHHhHH-HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHH
Confidence 88877733 335566666655543 799999999999999988765432 3345666443333 26789999999
Q ss_pred HHHHHHHHHHhChH-HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCC--CCchHH
Q 006898 457 ANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD--RVPNIK 531 (626)
Q Consensus 457 ~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d--~~~~vR 531 (626)
+++++.+...++.. .....++|.+...+ + +.++..|+.++..+++.++.. .+.+.++..+...+.. .+...+
T Consensus 527 ~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~ 603 (971)
T 2x1g_F 527 LETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDS 603 (971)
T ss_dssp HHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHH
Confidence 99999999887643 24566778887777 3 789999999999999877644 3456666667676665 356899
Q ss_pred HHHHHHHHHHHhhhc
Q 006898 532 FNVAKVLQSLIPIVD 546 (626)
Q Consensus 532 ~~a~~~l~~i~~~~~ 546 (626)
..+.++++.++...+
T Consensus 604 ~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 604 VRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999988765
No 42
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.66 E-value=5.9e-13 Score=150.33 Aligned_cols=531 Identities=10% Similarity=0.058 Sum_probs=311.8
Q ss_pred cHHHHHHHhcCc------cHHHHHHHHhhHHHHHHhhC---h--------H---hhhhhhccccccc-c-CCc-------
Q 006898 10 PIAVLIDELKND------DIQLRLNSIRRLSTIARALG---E--------E---RTRKELIPFLSEN-N-DDD------- 60 (626)
Q Consensus 10 ~i~~l~~~l~s~------d~~~r~~a~~~l~~i~~~~~---~--------~---~~~~~l~~~l~~~-~-~~~------- 60 (626)
.+..+++.++++ ++..+..++..|..+.+-.. . + ...+.+++++.++ . ..+
T Consensus 123 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~ 202 (971)
T 2x1g_F 123 AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEA 202 (971)
T ss_dssp ---HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Confidence 355677777765 66778888888887653210 0 0 0123444444431 1 111
Q ss_pred hHHHHHHHHHHhccccc--cCCcchhhcchHHHhhh----h-----------cCcchHHHHHHHHHHHHHHhhcChh---
Q 006898 61 DEVLLAMAEELGVFIPY--VGGVEHAHVLLPPLETL----C-----------TVEETCVRDKAVESLCRIGSQMRES--- 120 (626)
Q Consensus 61 ~~vr~~~~~~l~~~~~~--~~~~~~~~~l~~~l~~l----~-----------~~~~~~vR~~a~~~l~~i~~~~~~~--- 120 (626)
.+++..+.++++.++.+ .+.. ....+++.+..+ . .++++.+|..|++++..+...-.++
T Consensus 203 ~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~ 281 (971)
T 2x1g_F 203 YSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYP 281 (971)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCH
T ss_pred hhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccH
Confidence 27899999999876662 3322 334555644432 0 1257789999999999998753221
Q ss_pred hHHHhHHHHHHH----H---hcCCc---cchhHHHhhHhHHhcCCCC--------------hHHHHHHHHHHHHhcCC--
Q 006898 121 DLVDWYIPLVKR----L---AAGEW---FTARVSACGLFHIAYPSAP--------------DILKTELRSIYTQLCQD-- 174 (626)
Q Consensus 121 ~~~~~l~~~l~~----l---~~~~~---~~~r~~a~~~l~~~~~~~~--------------~~~~~~l~~~l~~l~~d-- 174 (626)
.....++|.+.. . ..+++ .......++++..+..... ......+++.++.+...
T Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~ 361 (971)
T 2x1g_F 282 KTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPG 361 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCC
Confidence 111223333222 1 12223 2455566666665542211 12334556666665433
Q ss_pred ---CCHHHHHHHHHhHHHHHHhh-C------cc-------chhhhHHHHHHHhhc---CC-----c-------hhHHHHH
Q 006898 175 ---DMPMVRRSAASNLGKFAATV-E------PA-------HLKTDIMSIFEDLTQ---DD-----Q-------DSVRLLA 222 (626)
Q Consensus 175 ---~~~~vR~~a~~~l~~l~~~~-~------~~-------~~~~~ll~~l~~l~~---d~-----~-------~~vr~~a 222 (626)
.+..|+..++..+..+++.. . .. .+...+++.+...+. |+ + ...|..+
T Consensus 362 ~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~ 441 (971)
T 2x1g_F 362 IYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDI 441 (971)
T ss_dssp CTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHH
T ss_pred CCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHH
Confidence 46778888998888877632 1 11 122234444333331 11 1 1467788
Q ss_pred HHHHHHhhcccCchhhhhhhHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhc-CCChH
Q 006898 223 VEGCAALGKLLEPQDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLL-RDNEA 294 (626)
Q Consensus 223 ~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d-----~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~ 294 (626)
...+..++...+ +...+.+++.+...+.. .+|..|.+++.+++.+++...... ....+++.+..+. +|.++
T Consensus 442 ~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~ 520 (971)
T 2x1g_F 442 SDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNV 520 (971)
T ss_dssp HHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCH
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCH
Confidence 888888888777 44566677777665543 789999999999999987655432 1234555444444 25689
Q ss_pred HHHHHHHHhHHHHHHhhChH-HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhhcC--
Q 006898 295 EVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKD-- 369 (626)
Q Consensus 295 ~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d-- 369 (626)
.||..++.+++.+++.+... .+...+++.+...+ | +.|+..++.++..+++.++.. .+.+.++..+...+..
T Consensus 521 ~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~ 597 (971)
T 2x1g_F 521 KLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGR 597 (971)
T ss_dssp HHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence 99999999999999987643 44567777777666 3 678999999999998766543 3455667777777776
Q ss_pred CCHHHHHHHHHhhHHHHhhhchhhH---HhhHHHHHH----HHhcCC--ChHHHHHHHH---HHHHHHHhhChh------
Q 006898 370 EFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIV----ELAEDR--HWRVRLAIIE---YIPLLASQLGVG------ 431 (626)
Q Consensus 370 ~~~~vr~~a~~~L~~~~~~~~~~~~---~~~i~~~l~----~~~~~~--~~~~r~~~~~---~l~~l~~~~~~~------ 431 (626)
.+...+..++++++.+....+.+.. .+.+++.+. +..+.. +...+...+. .++.+...++..
T Consensus 598 ~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~ 677 (971)
T 2x1g_F 598 MKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQAT 677 (971)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccc
Confidence 4688999999999999887652221 123333333 333332 3333444444 444444444321
Q ss_pred ---------hHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCCChHHHHHHHHH
Q 006898 432 ---------FFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRA 498 (626)
Q Consensus 432 ---------~~~~~l~p~l~~~l~d--~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~~~vR~~a~~~ 498 (626)
.+.+.++|.+...+.+ .+..|.+.++.+++.++..+|.+. +...+++.+...++.... ..++..
T Consensus 678 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l 754 (971)
T 2x1g_F 678 DQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEI 754 (971)
T ss_dssp ------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHH
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHH
Confidence 1235577777777643 366899999999999998887652 234455555554444322 457888
Q ss_pred HHHhccccChH--------HhhhcHHHHHhhhCCC-------CCchHHHHHHHHHHHHHhhhccc
Q 006898 499 ISLLAPVMGSE--------ITCSRLLPVVINASKD-------RVPNIKFNVAKVLQSLIPIVDQS 548 (626)
Q Consensus 499 l~~i~~~~~~~--------~~~~~~l~~l~~~l~d-------~~~~vR~~a~~~l~~i~~~~~~~ 548 (626)
++.++..++.+ .+...+...+...+.. ..++++......+..+..+....
T Consensus 755 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~ 819 (971)
T 2x1g_F 755 SKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQV 819 (971)
T ss_dssp HHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHH
Confidence 88888877653 1122222223333332 36789999999999988776543
No 43
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.66 E-value=5.3e-13 Score=150.85 Aligned_cols=401 Identities=12% Similarity=0.072 Sum_probs=238.1
Q ss_pred cchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCC-----CCHHHHHHHHHhHHHHHHhhCc---------------cc
Q 006898 139 FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQD-----DMPMVRRSAASNLGKFAATVEP---------------AH 198 (626)
Q Consensus 139 ~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-----~~~~vR~~a~~~l~~l~~~~~~---------------~~ 198 (626)
..+|...+.+++.++.+.-+..++++++.+...+++ +++..+..+...|..+.+.... ..
T Consensus 117 ~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~ 196 (963)
T 2x19_B 117 KIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAV 196 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGG
T ss_pred HHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHH
Confidence 334444555554444332122244444545444443 2444555566666655543210 12
Q ss_pred hhhhHHHHHHHhhcCCch--hHHHHHHHHHHHhhcccCch-hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Q 006898 199 LKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 275 (626)
Q Consensus 199 ~~~~ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~ 275 (626)
..+.+++.+...+.+... .++..+++++..... .+.. .....+++.+...+. ++.+|..+++++..+.......
T Consensus 197 ~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~ 273 (963)
T 2x19_B 197 ECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQ 273 (963)
T ss_dssp GHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGG
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccc
Confidence 234566777777665432 478888888877665 3321 122556777766664 4668899999998887532211
Q ss_pred cc---ccchHHHHHHh-------cCCChHHHHHHHHHhHHHHHHhhC--------hHHHHHhhHHHHHHhccC-----CC
Q 006898 276 PT---RMDLVPAYVRL-------LRDNEAEVRIAAAGKVTKFCRILN--------PELAIQHILPCVKELSSD-----SS 332 (626)
Q Consensus 276 ~~---~~~l~~~l~~~-------l~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~l~~~l~~l~~d-----~~ 332 (626)
.. ...+++.+... ..+.+.+......+.+..+++... .......++..+.+...+ .+
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 353 (963)
T 2x19_B 274 RYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVN 353 (963)
T ss_dssp GCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTT
T ss_pred cCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCch
Confidence 11 11223322221 222334455555565555554211 111223455666655554 35
Q ss_pred HHHHHHHHHHHHhhhhhhc----------H---HHHHHhHHHHHHHhhcCCC---------------HHHHHHHHHhhHH
Q 006898 333 QHVRSALASVIMGMAPLLG----------K---DATIEQLLPIFLSLLKDEF---------------PDVRLNIISKLDQ 384 (626)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~----------~---~~~~~~l~~~l~~~l~d~~---------------~~vr~~a~~~L~~ 384 (626)
+.+...++..+..+++... . ..+...+++.+...+..++ .+.|..+...|..
T Consensus 354 ~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~ 433 (963)
T 2x19_B 354 ETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMY 433 (963)
T ss_dssp CGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHH
Confidence 5666666777666655220 0 1123345555554442111 1346777778888
Q ss_pred HHhhhchhhHHhhHHHHHHHHh----cCCChHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006898 385 VNQVIGIDLLSQSLLPAIVELA----EDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAAN 458 (626)
Q Consensus 385 ~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~VR~~a~~ 458 (626)
++...+.+.+ +.+++.+.+.+ .+.+|+.|.+++.+++.+++.+... .+...+++.+.. +.++++.||..+++
T Consensus 434 ~~~~~~~~~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~ 511 (963)
T 2x19_B 434 VYEMLGAELL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMF 511 (963)
T ss_dssp HHHHHTHHHH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHH
T ss_pred HHHHccHHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHH
Confidence 8777775433 55666666666 6679999999999999999876542 233455554433 34467889999999
Q ss_pred HHHHHHHHhChH-HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCC--CCchHHHH
Q 006898 459 NLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD--RVPNIKFN 533 (626)
Q Consensus 459 ~l~~l~~~~~~~-~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d--~~~~vR~~ 533 (626)
+++.+...++.. .....+++.+.+.+.+ +.++..|+.++..+++.++.. .+.+.++..+..++.. -....|..
T Consensus 512 ~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~ 589 (963)
T 2x19_B 512 TIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMW 589 (963)
T ss_dssp HHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHH
Confidence 999999876532 3567788888887765 789999999999999876543 2455666666666653 35689999
Q ss_pred HHHHHHHHHhhhc
Q 006898 534 VAKVLQSLIPIVD 546 (626)
Q Consensus 534 a~~~l~~i~~~~~ 546 (626)
+.++++.++...+
T Consensus 590 ~~eai~~i~~~~~ 602 (963)
T 2x19_B 590 LMQALGFLLSALQ 602 (963)
T ss_dssp HHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987765
No 44
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.65 E-value=9.7e-13 Score=149.19 Aligned_cols=403 Identities=9% Similarity=0.001 Sum_probs=248.3
Q ss_pred chhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---------------c---chhh
Q 006898 140 TARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---------------A---HLKT 201 (626)
Q Consensus 140 ~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---------------~---~~~~ 201 (626)
.+|...+.+++.++.+.-+..++++++.+...++ .+...+..+...|..+.+.... + ...+
T Consensus 115 ~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~ 193 (1049)
T 3m1i_C 115 NLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFE 193 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 3455555555554443222344455555555554 3444455555555555543221 0 0123
Q ss_pred hHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCch-hhhhhhHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHhCCCc--
Q 006898 202 DIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ-DCVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEAVGPEP-- 276 (626)
Q Consensus 202 ~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~-~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-- 276 (626)
.+++.+..++.+. +..++..+++++..+....+.. ...+.+++.+. .+.. ++.+|..+++++..+...--...
T Consensus 194 ~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~ 271 (1049)
T 3m1i_C 194 QIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDND 271 (1049)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchh
Confidence 3455555555443 4678999999998887766542 23345666655 3332 67899999999988876521111
Q ss_pred -cccc---hHHHHHH------------------hcCCChHHHHHHHHHhHHHHHHhh------C--hHHHHHhhHHHHHH
Q 006898 277 -TRMD---LVPAYVR------------------LLRDNEAEVRIAAAGKVTKFCRIL------N--PELAIQHILPCVKE 326 (626)
Q Consensus 277 -~~~~---l~~~l~~------------------~l~d~~~~vr~~a~~~l~~l~~~~------~--~~~~~~~l~~~l~~ 326 (626)
.... +++.++. ...|.+.+......+.+..+++.. + .......+++.+..
T Consensus 272 ~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~ 351 (1049)
T 3m1i_C 272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQ 351 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Confidence 0111 1111121 113455666666666665554421 1 11223456777777
Q ss_pred hccCCCHHHHHHHHHHHHhhhhhh-----cH---HHHHHhHHHHHHHhhcC---------C----------C---HHHHH
Q 006898 327 LSSDSSQHVRSALASVIMGMAPLL-----GK---DATIEQLLPIFLSLLKD---------E----------F---PDVRL 376 (626)
Q Consensus 327 l~~d~~~~vr~~~~~~l~~l~~~~-----~~---~~~~~~l~~~l~~~l~d---------~----------~---~~vr~ 376 (626)
....++..++..+++.+..++... .. ..+...+++.++..+.- + + ...|.
T Consensus 352 ~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~ 431 (1049)
T 3m1i_C 352 LSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYK 431 (1049)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHH
Confidence 667778899999998888877622 11 23455566766665421 0 1 14466
Q ss_pred HHHHhhHHHHhhhchhhHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHhc-----
Q 006898 377 NIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ----- 446 (626)
Q Consensus 377 ~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~----- 446 (626)
.+..+|..++...+. .....+.+.+.+.+. +.+|+.|.+++.+++.++..++.. .+...+++.+..+..
T Consensus 432 ~~~~~L~~l~~~~~~-~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~ 510 (1049)
T 3m1i_C 432 SEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGK 510 (1049)
T ss_dssp HHHHHHHHHHHHCHH-HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSH
T ss_pred HHHHHHHHHHccCHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccc
Confidence 777778777755443 333556666666664 468999999999999998766543 234556666655432
Q ss_pred CCchHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH----------HhhhcH
Q 006898 447 DKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----------ITCSRL 515 (626)
Q Consensus 447 d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~----------~~~~~~ 515 (626)
|+.+.||..++++++.+...+... .....+++.+.+.+.++++.+|..|+.++.++++.++.. .+.+.+
T Consensus 511 ~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~i 590 (1049)
T 3m1i_C 511 DNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTI 590 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHH
Confidence 456667777999999888765432 245667888888889999999999999999999887654 335666
Q ss_pred HHHHhhhCCCCCchHHHHHHHHHHHHHhhhc
Q 006898 516 LPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (626)
Q Consensus 516 l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~ 546 (626)
+..+...+.+....-+....++++.++...+
T Consensus 591 l~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 591 IRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 6666677777666677888899999988776
No 45
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.65 E-value=6.2e-12 Score=142.10 Aligned_cols=522 Identities=12% Similarity=0.091 Sum_probs=316.6
Q ss_pred cHHHHHHH-hcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccc----cCCc---
Q 006898 10 PIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGV--- 81 (626)
Q Consensus 10 ~i~~l~~~-l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~----~~~~--- 81 (626)
.+..+++. ..+.|++.|..|-+.|..+-.. |+ .+..+..++. .+.+++||..++..+.+.+.. ++.+
T Consensus 25 ~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p~-~~~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 99 (963)
T 2x19_B 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVS--PQ-AWHFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSDIPTDQYE 99 (963)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--TT-HHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--HH-HHHHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHH
Confidence 35566666 4468999999999999887332 21 2333333333 256889999999999876542 1211
Q ss_pred chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcC-----CccchhHHHhhHhHHhcC--
Q 006898 82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-----EWFTARVSACGLFHIAYP-- 154 (626)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~-----~~~~~r~~a~~~l~~~~~-- 154 (626)
...+.++..+.... +.+..||.....++..|++..-++. ++.+++.+...+++ .+...+..+..++..+.+
T Consensus 100 ~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~ 177 (963)
T 2x19_B 100 SLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEF 177 (963)
T ss_dssp HHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHH
Confidence 12344455544432 2357899999999999988654433 45677777666654 133355556655554432
Q ss_pred --C-C--------C---hHHHHHHHHHHHHhcCCCC--HHHHHHHHHhHHHHHHhhCcc-chhhhHHHHHHHhhcCCchh
Q 006898 155 --S-A--------P---DILKTELRSIYTQLCQDDM--PMVRRSAASNLGKFAATVEPA-HLKTDIMSIFEDLTQDDQDS 217 (626)
Q Consensus 155 --~-~--------~---~~~~~~l~~~l~~l~~d~~--~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~l~~d~~~~ 217 (626)
. . . ....+.+++.+..++.+.+ ..++..+++++..+.. .+.. ...+.+++.+.+.+. +++
T Consensus 178 ~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~ 254 (963)
T 2x19_B 178 QTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSE 254 (963)
T ss_dssp TTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STT
T ss_pred hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--Cch
Confidence 1 0 0 1245677788887776543 2488888998887776 3332 122567787777774 578
Q ss_pred HHHHHHHHHHHhhcccCchh---hhhhhHHHHH-------HhcCCCCHHHHHHHHHHHHHHHHHhCCCc--------ccc
Q 006898 218 VRLLAVEGCAALGKLLEPQD---CVAHILPVIV-------NFSQDKSWRVRYMVANQLYELCEAVGPEP--------TRM 279 (626)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~-------~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~ 279 (626)
+|..|++++..+........ ....+++.+. ....+.+.......++.+..++....... ...
T Consensus 255 ~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 334 (963)
T 2x19_B 255 LFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFL 334 (963)
T ss_dssp THHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHH
Confidence 89999999999887543211 2222223222 12223344455566677766654321111 112
Q ss_pred chHHHHHHhcCC-----ChHHHHHHHHHhHHHHHHhhC-------hH------HHHHhhHHHHHHhccCC----------
Q 006898 280 DLVPAYVRLLRD-----NEAEVRIAAAGKVTKFCRILN-------PE------LAIQHILPCVKELSSDS---------- 331 (626)
Q Consensus 280 ~l~~~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~~-------~~------~~~~~l~~~l~~l~~d~---------- 331 (626)
.+++.++....+ .+++++..++..+..+++... .. .+...+++.+...+..+
T Consensus 335 ~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~ 414 (963)
T 2x19_B 335 ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSS 414 (963)
T ss_dssp HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCH
T ss_pred HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCh
Confidence 345555555553 345667677776666665221 00 11223333333222111
Q ss_pred ----CH-HHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhh----cCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHH
Q 006898 332 ----SQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL----KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402 (626)
Q Consensus 332 ----~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l 402 (626)
.+ ..|.++..++..++...+.+ ..+.+.+.+...+ .+.++..+.+++.+++.+.+....+. ...++.+
T Consensus 415 de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~--~~~l~~l 491 (963)
T 2x19_B 415 DEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY--SDVVPGL 491 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC--CSHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh--hHHHHHH
Confidence 11 34777888888888777743 4456666676667 66788999999999999987765422 2233333
Q ss_pred HHHh---cCCChHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH--Hhhhh
Q 006898 403 VELA---EDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHI 476 (626)
Q Consensus 403 ~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~i 476 (626)
...+ .+++..+|..++.+++.+++.++.. .+...+++.++..+++ +.||..|+.++..++...+... ..+.+
T Consensus 492 ~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~i 569 (963)
T 2x19_B 492 IGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANI 569 (963)
T ss_dssp HHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3332 4467889999999999998865432 3445677888888876 7899999999999998765431 23556
Q ss_pred HHHHHhhhcC--CChHHHHHHHHHHHHhccccChH---HhhhcHHHHHhhhC----C-CCCchHHH---HHHHHHHHHHh
Q 006898 477 TPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINAS----K-DRVPNIKF---NVAKVLQSLIP 543 (626)
Q Consensus 477 l~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~---~~~~~~l~~l~~~l----~-d~~~~vR~---~a~~~l~~i~~ 543 (626)
+..+.+++.. -+...|..+.++++.++...+.+ .+...+++.+...+ + +.+++.+. ....+|+.+..
T Consensus 570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~ 649 (963)
T 2x19_B 570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFT 649 (963)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6666666654 35789999999999998877622 23445555544432 2 22445544 45666666666
Q ss_pred hhc
Q 006898 544 IVD 546 (626)
Q Consensus 544 ~~~ 546 (626)
.++
T Consensus 650 ~~~ 652 (963)
T 2x19_B 650 TLD 652 (963)
T ss_dssp HCC
T ss_pred HcC
Confidence 654
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.64 E-value=1.7e-14 Score=130.41 Aligned_cols=185 Identities=22% Similarity=0.219 Sum_probs=138.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhh
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 241 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (626)
....+.+++.++|+++.+|..++.+|+.+.. ...++.+...+.|+++.+|..++.+|+.+.. +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 4556677778888888888888888887532 2356677777788888888888888877652 34
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhH
Q 006898 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 321 (626)
Q Consensus 242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 321 (626)
.++.+...+.|+++.||..++.+++.+. ....++.+..+++|+++.||..++.+|+.+.. ...+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 140 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 140 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 5677777888888888888888887754 23567778888888888888888888887753 3456
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHH
Q 006898 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (626)
Q Consensus 322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~ 386 (626)
+.+..+++|+++.||..++.+++.+.. +..++.+..+++|+++.||..|..+|+.+.
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 777777888888888888888887742 345666777778888888888888887653
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.64 E-value=1.3e-14 Score=132.40 Aligned_cols=184 Identities=21% Similarity=0.214 Sum_probs=124.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhH
Q 006898 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243 (626)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 243 (626)
.++.+...++|+++.+|..++..|+.+.. +..++.+...+.|+++.+|..++.+|+.+.. +..+
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~ 83 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAV 83 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHH
Confidence 34555566677778888887777776532 2456666777777777788877777776642 3456
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHH
Q 006898 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (626)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 323 (626)
+.+...+.|+++.||..++.+++.+. ....++.+..+++|+++.||..++.+|+.+.. +..++.
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~ 147 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEP 147 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHH
Confidence 66667777777778877777777653 23466777777777777777777777777643 334666
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (626)
Q Consensus 324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~ 387 (626)
+.++++|+++.||..++.+++.+.. +..++.+..+++|+++.||..|..+|..+..
T Consensus 148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 6777777777777777777777642 3455666667777777777777777776644
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.63 E-value=2.5e-14 Score=129.32 Aligned_cols=187 Identities=21% Similarity=0.223 Sum_probs=141.6
Q ss_pred chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 006898 198 HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277 (626)
Q Consensus 198 ~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~ 277 (626)
.+.+...+.+.+.++|+++.+|..++..|+.+.. +..++.+...+.|+++.+|..++.+++.+.
T Consensus 10 ~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------- 73 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 73 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------
T ss_pred ccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 3445677888888888999999988888887652 245677777788888889988888888764
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Q 006898 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 357 (626)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 357 (626)
....++.+..+++|+++.+|..|+.+|+.+.. +..++.+..+++|+++.||..++.+++.+.. .
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~ 137 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------E 137 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------G
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------H
Confidence 23567888888888888899988888887653 3456777777788888888888888888752 2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 006898 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (626)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l 424 (626)
..++.+..+++|+++.||..|+.+|+.+.. ...++.+.++++|+++.+|..+.+++..+
T Consensus 138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 138 RAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 456777888888888888888888888732 34566677777777777777777776654
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.63 E-value=2.2e-14 Score=130.79 Aligned_cols=183 Identities=21% Similarity=0.218 Sum_probs=100.7
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 006898 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL 281 (626)
Q Consensus 202 ~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 281 (626)
..++.+...++|+++.+|..++..|+.+.. +..++.+...+.|+++.||..++.+++.+. ....
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~ 82 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DERA 82 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHHH
Confidence 345555556666666666666666665442 234555555666666666666666666543 1344
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHH
Q 006898 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 361 (626)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 361 (626)
++.+..+++|+++.+|..++.+|+.+.. +..++.+.++++|+++.||..++.+++.+.. +..++
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~ 146 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE 146 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHH
Confidence 5666666666666666666666665532 2334555555566666666666666655532 12344
Q ss_pred HHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 006898 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (626)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l 424 (626)
.+..+++|+++.||..++.+|+.+.. ...++.+.++++|+++.+|..+.+++..+
T Consensus 147 ~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 147 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 55555556666666666666655521 23444444444455555555555554444
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=6.2e-14 Score=130.58 Aligned_cols=185 Identities=15% Similarity=0.168 Sum_probs=136.6
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh---HHHHHhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhhhhcHH--H
Q 006898 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKD--A 354 (626)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~--~ 354 (626)
+-+.+.+.++|.+|..|.+++..+..+++..+. ..+ ..+++.+...+. |++..||..++.+++.++..++.. .
T Consensus 16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333445555566666666666666665554211 111 345666666663 777777777777777777766653 3
Q ss_pred HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh---
Q 006898 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--- 431 (626)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--- 431 (626)
+...++|.+...+.|.++.||.++..++..++...+. +.++|.+...+++++|++|..++.+++.+....++.
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 4567888888888888888998888888888776553 467888888889999999999999999987766533
Q ss_pred -hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 432 -FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 432 -~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
.+.+.++|.+..+++|+++.||.+|..+++.++..+|.+
T Consensus 171 ~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence 244678999999999999999999999999999999865
No 51
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=6.4e-14 Score=130.46 Aligned_cols=191 Identities=15% Similarity=0.119 Sum_probs=132.4
Q ss_pred hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhChH
Q 006898 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE 314 (626)
Q Consensus 238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~ 314 (626)
....+-+.+...++|++|..|..++..|..+....+. ......+++.+...+. |.+..||..++.+++.++..++..
T Consensus 12 i~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~ 91 (242)
T 2qk2_A 12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR 91 (242)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred ccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444555666777788888777777777765332 1112356777777773 777788888888888877766653
Q ss_pred --HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh
Q 006898 315 --LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (626)
Q Consensus 315 --~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~ 392 (626)
.+.+.++|.+...+.|++..||.++..++..+....+ .+.++|.+...+++.++.+|..++..++.+....+++
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 3446677777777778888888888887777776544 3456777777777778888888888888776554432
Q ss_pred ----hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh
Q 006898 393 ----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (626)
Q Consensus 393 ----~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 432 (626)
.+...++|.+.+.++|+++.+|.++.++++.++...|.+.
T Consensus 168 ~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~ 211 (242)
T 2qk2_A 168 ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA 211 (242)
T ss_dssp GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence 2235677788888888888888888888888887777643
No 52
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=5e-13 Score=123.78 Aligned_cols=197 Identities=11% Similarity=0.191 Sum_probs=160.1
Q ss_pred chhhhHHHHHHHhhcCCchhHHHHHHHHHHH-hhcccCc----hhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHH
Q 006898 198 HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA-LGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEA 271 (626)
Q Consensus 198 ~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~-l~~~~~~----~~~~~~i~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~ 271 (626)
.+.+.+-+-|...+.+.+|.-|..++..+.. +.+..++ ......++..+.+.+ .|.+..||..++++++.++..
T Consensus 12 ~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~ 91 (249)
T 2qk1_A 12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK 91 (249)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 3344455556677889999999999999999 8765433 112245677888888 799999999999999999999
Q ss_pred hC-CCcc---ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHH---HHHhhHHHHHHhccCCCHHHHHHHHHHHH
Q 006898 272 VG-PEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AIQHILPCVKELSSDSSQHVRSALASVIM 344 (626)
Q Consensus 272 ~~-~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~~~~~l~ 344 (626)
++ ..+. ...++|.++..++|..+.||.++..++..+++.+++.. ..+.+++.+...+++++|.+|..++.++.
T Consensus 92 l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 92 LKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFN 171 (249)
T ss_dssp HCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 98 5543 24689999999999999999999999999999874321 13567888888889999999999999999
Q ss_pred hhhhhhcH---H--HHH-HhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH
Q 006898 345 GMAPLLGK---D--ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (626)
Q Consensus 345 ~l~~~~~~---~--~~~-~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~ 394 (626)
.+....+. . .+. +.++|.+..+++|.++.||.+|..+++.++..+|.+.+
T Consensus 172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 99877663 2 356 78999999999999999999999999999999997543
No 53
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.53 E-value=9.8e-11 Score=122.01 Aligned_cols=445 Identities=9% Similarity=0.067 Sum_probs=285.9
Q ss_pred CcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHh----cCCccchhHHHhhHhHHhcCCCChHH-----HHHHHHH
Q 006898 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA----AGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSI 167 (626)
Q Consensus 97 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~----~~~~~~~r~~a~~~l~~~~~~~~~~~-----~~~l~~~ 167 (626)
.+.++||..+.-++.++.+..+ +...+.+..++..+. .+.....-..+...+..+++..++-. .+...+.
T Consensus 181 ~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~ 259 (778)
T 3opb_A 181 ISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL 259 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence 4567899888888877777665 344455555555444 22233445567777777777766421 1233445
Q ss_pred HHHhc-CCCCHHHHHHHHHhHHHHHHhhC-ccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-hhhhhhhHH
Q 006898 168 YTQLC-QDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILP 244 (626)
Q Consensus 168 l~~l~-~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~ 244 (626)
+.... ...+..+..++++.+...+..-. .+....+.++.+.+.+++ ..+|..|+-.|..+....+. ......+.+
T Consensus 260 l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~ 337 (778)
T 3opb_A 260 FKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSE 337 (778)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence 55444 44566677777766665543211 123345566778887765 47888888888887765543 222345777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCcc-ccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhC--------
Q 006898 245 VIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPT-RMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILN-------- 312 (626)
Q Consensus 245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~-~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~-------- 312 (626)
.+.+.+.+++...|..+++.|..+.-.-. .... ...+++.++.++++ .+..+..+++..+..++....
T Consensus 338 ~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~ 417 (778)
T 3opb_A 338 IFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXX 417 (778)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhh
Confidence 77777777666668888888876642100 0000 12345555555553 334454555555444433111
Q ss_pred ------------h---------------------HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH-H-HHHH
Q 006898 313 ------------P---------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D-ATIE 357 (626)
Q Consensus 313 ------------~---------------------~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~-~~~~ 357 (626)
+ ......++|.+..++.+.++.+|..+++++..++..-.. . ....
T Consensus 418 l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqq 497 (778)
T 3opb_A 418 XXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQ 497 (778)
T ss_dssp -----------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHT
T ss_pred hhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 0 001134678888999999999999999999999854321 2 2334
Q ss_pred hHHHHHHHhhcCCCHH---HHHHHHHhhHHHHhhhchhhHH-----hhHHHHHHHHhcC-CCh-------------HHHH
Q 006898 358 QLLPIFLSLLKDEFPD---VRLNIISKLDQVNQVIGIDLLS-----QSLLPAIVELAED-RHW-------------RVRL 415 (626)
Q Consensus 358 ~l~~~l~~~l~d~~~~---vr~~a~~~L~~~~~~~~~~~~~-----~~i~~~l~~~~~~-~~~-------------~~r~ 415 (626)
..++.++.++.+.... +|..|+.+|.++.....+.... ...+|.|.+++.. +.. ..+.
T Consensus 498 Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~f 577 (778)
T 3opb_A 498 GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNY 577 (778)
T ss_dssp THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHH
T ss_pred CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHH
Confidence 5788889998876544 8999999999988554433221 2678899999872 221 3377
Q ss_pred HHHHHHHHHHHhhC-------hhhHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHh------hhhHH
Q 006898 416 AIIEYIPLLASQLG-------VGFFD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAM------QHITP 478 (626)
Q Consensus 416 ~~~~~l~~l~~~~~-------~~~~~-~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~------~~il~ 478 (626)
.++.++..++..-+ ...+. ...+|.+..++.+.+..||++|++++..++..-.. .++. ..-++
T Consensus 578 eAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~ 657 (778)
T 3opb_A 578 EALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFN 657 (778)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHH
Confidence 89999999987542 11233 35789999999999999999999999999863221 1110 11277
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhccccCh--H-Hhh-hcHHHHHhhhCCC--CCchHHHHHHHHHHHHHhh
Q 006898 479 QVLEMINNPHYLYRMTILRAISLLAPVMGS--E-ITC-SRLLPVVINASKD--RVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 479 ~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~--~-~~~-~~~l~~l~~~l~d--~~~~vR~~a~~~l~~i~~~ 544 (626)
.+..++...+..+|.+|+.++.++....+. . .+. ...++.+..++++ +++++|..++.++.++...
T Consensus 658 lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 658 ILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999998532221 1 122 2467777778877 8999999999999999974
No 54
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.53 E-value=8.4e-11 Score=130.44 Aligned_cols=345 Identities=9% Similarity=0.037 Sum_probs=216.7
Q ss_pred hhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCchh-hhhhhHHHHH-HhcCCCCHHHHHHHHHHHHHHHHH-h-CCC
Q 006898 201 TDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEA-V-GPE 275 (626)
Q Consensus 201 ~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~-~~~~d~~~~vR~~a~~~l~~l~~~-~-~~~ 275 (626)
+.+++.+...+.+ .++++...+++++....+..+-.. ..+.+++.+. .++. ++..|..++++|..+... . +..
T Consensus 193 ~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 193 EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence 3455555555543 456788889999999888766532 2345677766 6664 467899999999988752 1 111
Q ss_pred -ccccc-------hHHHH-HHh-------------cCCChHHHHHHHHHhHHHHHHhhCh-----H---HHHHhhHHHHH
Q 006898 276 -PTRMD-------LVPAY-VRL-------------LRDNEAEVRIAAAGKVTKFCRILNP-----E---LAIQHILPCVK 325 (626)
Q Consensus 276 -~~~~~-------l~~~l-~~~-------------l~d~~~~vr~~a~~~l~~l~~~~~~-----~---~~~~~l~~~l~ 325 (626)
...+. .++.+ ..+ -.+++.+........+..+++.... + ......+..+.
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll 350 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 11111 11111 100 1234556555555555555542211 1 11122233555
Q ss_pred HhccCCCHHHHHHHHHHHHhhhhhhcH--------HHHHHhHHHHHHHhhcCC---------------------CHHHHH
Q 006898 326 ELSSDSSQHVRSALASVIMGMAPLLGK--------DATIEQLLPIFLSLLKDE---------------------FPDVRL 376 (626)
Q Consensus 326 ~l~~d~~~~vr~~~~~~l~~l~~~~~~--------~~~~~~l~~~l~~~l~d~---------------------~~~vr~ 376 (626)
.....+++.+-..+++.+..+...+-. ..+...+++.+..-+.-+ +....-
T Consensus 351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f 430 (1023)
T 4hat_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY 430 (1023)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHH
T ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHH
Confidence 556667788867777777777653221 223345666665544311 100111
Q ss_pred -HHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHhc----
Q 006898 377 -NIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ---- 446 (626)
Q Consensus 377 -~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~---- 446 (626)
..-.+|..+....+.+ ..+.+++.+.+.+.+ .+|+.|.+++-+++.++++..++ .+...++|.++.++.
T Consensus 431 ~~~Rd~L~~l~~l~~~~-~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 431 KSEREVLVYLTHLNVID-TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhccCHHH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 1114455554444443 335566777665543 68999999999999999887654 344667888888775
Q ss_pred -CCchHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH----------hhhc
Q 006898 447 -DKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSR 514 (626)
Q Consensus 447 -d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~----------~~~~ 514 (626)
|+...||..+++++|.+.+.+... .....+++.+.+.+.++++++..+|+.++..+++.+.... +.+.
T Consensus 510 ~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~ 589 (1023)
T 4hat_C 510 KDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence 466678889999999998876432 2346667777777888899999999999999999877543 4566
Q ss_pred HHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc
Q 006898 515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (626)
Q Consensus 515 ~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~ 548 (626)
++..+.....+-.+.-+..+.++++.++...++.
T Consensus 590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence 6667777777777888899999999999988753
No 55
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.53 E-value=6.9e-11 Score=131.06 Aligned_cols=523 Identities=12% Similarity=0.088 Sum_probs=317.6
Q ss_pred cHHHHHHHHhhHHHHHHhhChH----h---hhhhhcccccccc--CCchHHHHHHHHHHhccccccCCcchhhcchHHHh
Q 006898 22 DIQLRLNSIRRLSTIARALGEE----R---TRKELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE 92 (626)
Q Consensus 22 d~~~r~~a~~~l~~i~~~~~~~----~---~~~~l~~~l~~~~--~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~ 92 (626)
+..+|..|+..|....+.++++ . .++.++.++.... +..+-+|..++.++..++.... +..|+.+++-+.
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~-p~~Wp~~i~~l~ 134 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLY-PSNWNDFFASLQ 134 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHT-TTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhC-cccCchHHHHHH
Confidence 7899999999998776655544 2 4556667666532 3466899999999998877543 456777777666
Q ss_pred hhhcCcch-HHHHHHHHHHHHHHhhcCh-----------------hhH--------HHhHHHHHHHHhcCCccchhHHHh
Q 006898 93 TLCTVEET-CVRDKAVESLCRIGSQMRE-----------------SDL--------VDWYIPLVKRLAAGEWFTARVSAC 146 (626)
Q Consensus 93 ~l~~~~~~-~vR~~a~~~l~~i~~~~~~-----------------~~~--------~~~l~~~l~~l~~~~~~~~r~~a~ 146 (626)
.+.+.++. ..-....+.+..+.+.+.. +.+ .+.+..++.......+...+..+.
T Consensus 135 ~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L 214 (980)
T 3ibv_A 135 GVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCL 214 (980)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 65543333 2333444455544343211 000 111223333332334556777888
Q ss_pred hHhHHhcCCCChHH--HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHH------HHHHhhc-CCchh
Q 006898 147 GLFHIAYPSAPDIL--KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS------IFEDLTQ-DDQDS 217 (626)
Q Consensus 147 ~~l~~~~~~~~~~~--~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~------~l~~l~~-d~~~~ 217 (626)
+++.....-.+... .+.+++.+..++.+ +.+|.+|+++|..+...-.+......++. .+..+.. +++.+
T Consensus 215 ~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d 292 (980)
T 3ibv_A 215 QVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPN 292 (980)
T ss_dssp HHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHH
T ss_pred HHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHH
Confidence 88888887666542 26888888888876 79999999999998876443222112222 2222222 34555
Q ss_pred HHHHHHHHHHHhhcc------cC----c------hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CC-Ccc
Q 006898 218 VRLLAVEGCAALGKL------LE----P------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GP-EPT 277 (626)
Q Consensus 218 vr~~a~~~l~~l~~~------~~----~------~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~-~~~ 277 (626)
+.+.-.+.+..+++. .+ . ......+++.+..++.+++..|-..+...+..+.... +. ...
T Consensus 293 ~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~ 372 (980)
T 3ibv_A 293 FDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKEL 372 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccc
Confidence 554433333333221 11 0 0334567888888888888888777776666655432 21 111
Q ss_pred c-------cchHHHHHHhcC-------C-----Ch----HHHHHHHHHhHHHHHHhhChHHHHH----hhHHHHHHhc--
Q 006898 278 R-------MDLVPAYVRLLR-------D-----NE----AEVRIAAAGKVTKFCRILNPELAIQ----HILPCVKELS-- 328 (626)
Q Consensus 278 ~-------~~l~~~l~~~l~-------d-----~~----~~vr~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~l~-- 328 (626)
. ..+++.+..-+. | ++ .+.|.... .+-..+..++++.+.+ .+.+.+.+.+
T Consensus 373 ~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~ 451 (980)
T 3ibv_A 373 SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATL 451 (980)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Confidence 1 123333333221 1 11 24676666 7777788888887767 6666666654
Q ss_pred -cCCCHHHHHHHHHHHHhhhhhhcHH--------HHHHhHHHHHHHhhc-----CCCHHHHHHHHHhhHHHHhhhchh-h
Q 006898 329 -SDSSQHVRSALASVIMGMAPLLGKD--------ATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGID-L 393 (626)
Q Consensus 329 -~d~~~~vr~~~~~~l~~l~~~~~~~--------~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~L~~~~~~~~~~-~ 393 (626)
.+.+|+.+++++-+++.+++.+... ...+.+++.+..+++ ++.+.||..++..++++.+.+... .
T Consensus 452 ~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~ 531 (980)
T 3ibv_A 452 SPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESA 531 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT
T ss_pred cCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCch
Confidence 2467999999999999998865421 123356777777765 888999999999999999887643 2
Q ss_pred HHhhHHHHHHH--HhcCCChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCC---------------------
Q 006898 394 LSQSLLPAIVE--LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK--------------------- 448 (626)
Q Consensus 394 ~~~~i~~~l~~--~~~~~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~--------------------- 448 (626)
+...+++.+.. .+.+++.++|..+..++..+++.+.... +.+.++..+..++.-.
T Consensus 532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 611 (980)
T 3ibv_A 532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNS 611 (980)
T ss_dssp THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTT
T ss_pred hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccC
Confidence 22344455544 4557888999999999999999876532 2233444444444310
Q ss_pred chHHHHHHHHHHHHHHHHhCh--H---HHhhhhHHHHH----hhhcCC----ChHH-HHHHHHHHHHhccccCh------
Q 006898 449 VYSIRDAAANNLKRLAEEFGP--E---WAMQHITPQVL----EMINNP----HYLY-RMTILRAISLLAPVMGS------ 508 (626)
Q Consensus 449 ~~~VR~~a~~~l~~l~~~~~~--~---~~~~~il~~l~----~~l~~~----~~~v-R~~a~~~l~~i~~~~~~------ 508 (626)
..+-+....+++|.++...+. + ...+.+++.+. ..+... +... -...+.+++.+++.++.
T Consensus 612 ~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~ 691 (980)
T 3ibv_A 612 DFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEV 691 (980)
T ss_dssp THHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCC
T ss_pred CchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence 122456688899999987652 1 12244444433 233221 2212 22556777888876532
Q ss_pred --HHhhhcHHHHHhhhCC--CCCchHHHHHHHHHHHHHhhhccc
Q 006898 509 --EITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQS 548 (626)
Q Consensus 509 --~~~~~~~l~~l~~~l~--d~~~~vR~~a~~~l~~i~~~~~~~ 548 (626)
......+++.+...+. ..+..||..++.++.+++..+|..
T Consensus 692 p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~ 735 (980)
T 3ibv_A 692 AWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD 735 (980)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh
Confidence 1233455566655554 466899999999999999998874
No 56
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.53 E-value=8.9e-12 Score=127.98 Aligned_cols=347 Identities=15% Similarity=0.107 Sum_probs=222.2
Q ss_pred chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--
Q 006898 198 HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV-- 272 (626)
Q Consensus 198 ~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~-- 272 (626)
.+.+.-+|.+..++.++++.++..|+.++..++..... .......+|.+..++.+++..++..++.+|..++..-
T Consensus 44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 34444566666666666677777777777666643221 1223345677777777777777777777777766310
Q ss_pred --CCCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCh-HHHHHhhHHHHHHhc------------------cC
Q 006898 273 --GPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNP-ELAIQHILPCVKELS------------------SD 330 (626)
Q Consensus 273 --~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~------------------~d 330 (626)
.........+|.++.+++. .+.++++.+..+|..++..-.. ..+....+|.|.+++ ..
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 0011123467777777764 4567777777777666552111 122234456665543 12
Q ss_pred CCHHHHHHHHHHHHhhhhhhc--HHHHH--HhHHHHHHHhhc------CCCHHHHHHHHHhhHHHHhhh-----------
Q 006898 331 SSQHVRSALASVIMGMAPLLG--KDATI--EQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVI----------- 389 (626)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~--~~~~~--~~l~~~l~~~l~------d~~~~vr~~a~~~L~~~~~~~----------- 389 (626)
.+..|+..+..+|..++..-. ..... .-+++.++..+. +.+....+.|+.+|..++...
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 356888888888888875321 11111 123444444443 345567777777776655331
Q ss_pred ----------------chhhH-HhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChh------hH-HHHHHHHHHHH
Q 006898 390 ----------------GIDLL-SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG------FF-DDKLGALCMQW 444 (626)
Q Consensus 390 ----------------~~~~~-~~~i~~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~------~~-~~~l~p~l~~~ 444 (626)
|.+.+ ...+++.+..+++ ..+..++..++.++..++..-++. .+ ....+|.+..+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 11111 1245677777775 567999999999999997532211 11 14569999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhhcCC--------ChHHHHHHHHHHHHhccccCh---HHhh
Q 006898 445 LQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNP--------HYLYRMTILRAISLLAPVMGS---EITC 512 (626)
Q Consensus 445 l~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~~--------~~~vR~~a~~~l~~i~~~~~~---~~~~ 512 (626)
+..++..|+..|+.+|+.++..-... .+....+|.|.+++.++ +..++..++.++++++..-.. ....
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~ 443 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE 443 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999998754322 34467899999988775 357889999999988743211 2234
Q ss_pred hcHHHHHhhhCCCC--CchHHHHHHHHHHHHHhh
Q 006898 513 SRLLPVVINASKDR--VPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 513 ~~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~ 544 (626)
...+|.|..++.+. .+.++..|+.+|..+..+
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 57899999999876 789999999999998754
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.52 E-value=9.2e-13 Score=123.79 Aligned_cols=230 Identities=11% Similarity=0.029 Sum_probs=152.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh---ChhhHH
Q 006898 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFD 434 (626)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~~~~~ 434 (626)
|.+..++.++++.+|..|+.+|..+...... ......+++.+.+++++++..+|..++.++..++... ......
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3444444444455555555555444332210 0111234555555555555555555555555554321 011122
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---
Q 006898 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--- 508 (626)
Q Consensus 435 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~--- 508 (626)
...+|.+..++.+++..+|..|+.+|+.++..... .......+|.+.+++.++++.+|..++.++++++...+.
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~ 164 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 164 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34678888889999999999999999999842211 123356899999999999999999999999999874322
Q ss_pred HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---chhhhcccchHHhhhccCCCcccccccccCchhHHHHH
Q 006898 509 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCL 585 (626)
Q Consensus 509 ~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~ 585 (626)
.......+|.|..++.++++.+|..++.+|+.+...... ......+++.|. .++.+++.++|. .|..
T Consensus 165 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~v~~---------~a~~ 234 (252)
T 4hxt_A 165 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQ-KLLTSTDSEVQK---------EAQR 234 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHH-HGGGCSCHHHHH---------HHHH
T ss_pred HHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH-HHHCCCcHHHHH---------HHHH
Confidence 223466899999999999999999999999999863221 122356788888 889999999999 9999
Q ss_pred HHHHHHHHhhcCCcc
Q 006898 586 ALNYCHRWWRKQSVP 600 (626)
Q Consensus 586 al~~~~~~~~~~~~~ 600 (626)
+|..+.........+
T Consensus 235 ~L~~l~~~~~~~~~~ 249 (252)
T 4hxt_A 235 ALENIKSGGWLEHHH 249 (252)
T ss_dssp HHHHHHHTCBCCC--
T ss_pred HHHHHHcCCCccccc
Confidence 999887665544443
No 58
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.52 E-value=2.3e-12 Score=121.06 Aligned_cols=230 Identities=13% Similarity=0.080 Sum_probs=140.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHh
Q 006898 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 358 (626)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 358 (626)
+|.+..++++.++++|..|+.++..++...+.. ......+|.+.++++++++.+|..++.++..++..-.. .
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~--- 78 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE--A--- 78 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH--H---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH--H---
Confidence 455566666655666666666666655432211 11223445555555555555555555555555432100 0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhHHH
Q 006898 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDD 435 (626)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~ 435 (626)
.........+|.+.+++++++..+|..++.++..++.... ......
T Consensus 79 -------------------------------~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 127 (252)
T 4hxt_A 79 -------------------------------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 127 (252)
T ss_dssp -------------------------------HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred -------------------------------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 0001112344444555555555555555555554442110 111223
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---H
Q 006898 436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---E 509 (626)
Q Consensus 436 ~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~ 509 (626)
..+|.+..++.++++.+|..++.+|+.++..... ......++|.+.+++.++++.+|..++.++++++..... .
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 207 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA 207 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4677888888888899999999999988753211 123356889999999999999999999999999863221 1
Q ss_pred HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
......++.+..+++++++.+|..|+++|+++....+.
T Consensus 208 l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 208 IVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 23456889999999999999999999999999876544
No 59
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.51 E-value=4.2e-12 Score=129.72 Aligned_cols=149 Identities=12% Similarity=0.043 Sum_probs=110.2
Q ss_pred hhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChh-------hH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 006898 396 QSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG-------FF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (626)
Q Consensus 396 ~~i~~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~-------~~-~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~ 466 (626)
..+++.+..++.+ ++..++..++.++..++..-+.. .+ ....+|.+..++.+.+..||..|+++|..++..
T Consensus 282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 3467777777754 46889999999999887543321 11 134679999999999999999999999999763
Q ss_pred hChH-HHhhhhHHHHHhhhcCCCh------HHHHHHHHHHHHhccccChH---HhhhcHHHHHhhhCCCC-CchHHHHHH
Q 006898 467 FGPE-WAMQHITPQVLEMINNPHY------LYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDR-VPNIKFNVA 535 (626)
Q Consensus 467 ~~~~-~~~~~il~~l~~~l~~~~~------~vR~~a~~~l~~i~~~~~~~---~~~~~~l~~l~~~l~d~-~~~vR~~a~ 535 (626)
-... .+....+|.+.+++..++. .+...++.+++++...-+.. ......++.|..++++. +..++..|+
T Consensus 362 ~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~ 441 (457)
T 1xm9_A 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441 (457)
T ss_dssp GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence 2111 2345688999998877643 57778899999987543321 22356889999999888 899999999
Q ss_pred HHHHHHHhh
Q 006898 536 KVLQSLIPI 544 (626)
Q Consensus 536 ~~l~~i~~~ 544 (626)
++|..+...
T Consensus 442 ~~L~~~~~~ 450 (457)
T 1xm9_A 442 LLLSDMWSS 450 (457)
T ss_dssp HHHHTTSSS
T ss_pred HHHHHHHcc
Confidence 999987643
No 60
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.51 E-value=7.2e-11 Score=123.01 Aligned_cols=484 Identities=12% Similarity=0.107 Sum_probs=303.4
Q ss_pred HHHHHHH--hcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-c----c--CCchHHHHHHHHHHhccccccC--
Q 006898 11 IAVLIDE--LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N----N--DDDDEVLLAMAEELGVFIPYVG-- 79 (626)
Q Consensus 11 i~~l~~~--l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~----~--~~~~~vr~~~~~~l~~~~~~~~-- 79 (626)
+.+|+.+ ++...+++|..++-.+..+.... ++++.+.+..++.. + . +.++-+ .+...+..+.+.++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~~~~~~~~~~~l~~e~~~~~~~~~~~--~~~~~l~~lfPi~p~~ 246 (778)
T 3opb_A 170 VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDFDKAVVDFMSSLIVEAEIDVGNDPLS--IIVKTLSELYPSLTTL 246 (778)
T ss_dssp TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHTTTTHHH
T ss_pred hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHhhccCCCCccHH--HHHHHHHHHhcCCHHH
Confidence 6677766 46888899999998888885554 35566666666553 1 1 223322 22233333222211
Q ss_pred -Ccc-hhhcchHHHhhhh-cCcchHHHHHHHHHHHHHHhhcC-hhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCC
Q 006898 80 -GVE-HAHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMR-ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (626)
Q Consensus 80 -~~~-~~~~l~~~l~~l~-~~~~~~vR~~a~~~l~~i~~~~~-~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~ 155 (626)
..- ..+.+.+.+.... +.++..+..++.+.+...+..-. ++.+..+..+++..++++ ..+|..|+..++.+...
T Consensus 247 ~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~ 324 (778)
T 3opb_A 247 CSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSF 324 (778)
T ss_dssp HHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGG
T ss_pred HHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcC
Confidence 010 1123344444433 34556666777777766554221 234455677888888865 46788888887776543
Q ss_pred C--ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cch--hhhHHHHHHHhhcC-CchhHHHHHHHHHHHh
Q 006898 156 A--PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHL--KTDIMSIFEDLTQD-DQDSVRLLAVEGCAAL 229 (626)
Q Consensus 156 ~--~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~--~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l 229 (626)
. ......++.+.+...+.+++...|+.+++.|+.+...-.. +.+ .+.++..+..++++ ++..+...++..+.++
T Consensus 325 ~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NL 404 (778)
T 3opb_A 325 TKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANL 404 (778)
T ss_dssp GTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHT
T ss_pred CCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 2 2335567889999988887777799999999998642111 111 13456777777775 5667888899999999
Q ss_pred hcccCchh----hhhhhHHHHHHhc----CCCCHHHHHHHHHHHHH-HHHHhCCCccccchHHHHHHhcCCChHHHHHHH
Q 006898 230 GKLLEPQD----CVAHILPVIVNFS----QDKSWRVRYMVANQLYE-LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300 (626)
Q Consensus 230 ~~~~~~~~----~~~~i~~~l~~~~----~d~~~~vR~~a~~~l~~-l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 300 (626)
....+... -..++.++...-. .+++.. ... ..+.. ....+ .....+|.+..+++.+++.+|..+
T Consensus 405 t~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~--~~~-~~v~~~~~~~l----~eaGvIp~Lv~Ll~S~s~~~re~A 477 (778)
T 3opb_A 405 STLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK--AAK-EDILLFNEKYI----LRTELISFLKREMHNLSPNCKQQV 477 (778)
T ss_dssp TCCCCCCCCCCC------------------CCTHH--HHH-HHHHHHHHHHT----TTTTHHHHHHHHGGGSCHHHHHHH
T ss_pred cCCCcccchhhhhhhhhhhhccccCcccCcccccc--cch-HHHHHHHHHHH----HHCcCHHHHHHHHcCCCHHHHHHH
Confidence 88765421 1222222222110 011111 111 11111 11111 134689999999999999999999
Q ss_pred HHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHH---HHHHHHHHHHhhhhhhcHHHHH-----HhHHHHHHHhhcC-
Q 006898 301 AGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQH---VRSALASVIMGMAPLLGKDATI-----EQLLPIFLSLLKD- 369 (626)
Q Consensus 301 ~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d- 369 (626)
++++..++..-... ...+..++.+.+++.+.... +|..++.++..+.-.-.+.... ...+|.+..+|..
T Consensus 478 ~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~ 557 (778)
T 3opb_A 478 VRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRS 557 (778)
T ss_dssp HHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCS
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCC
Confidence 99999998643211 34456678888877765543 8999999998887433222111 1567888888872
Q ss_pred CCH-------------HHHHHHHHhhHHHHhhhch------h-hHH-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 006898 370 EFP-------------DVRLNIISKLDQVNQVIGI------D-LLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (626)
Q Consensus 370 ~~~-------------~vr~~a~~~L~~~~~~~~~------~-~~~-~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 428 (626)
+.. --+..|+.+|.+++..-+. . .+. ...+|.+.+++.+.+..+|.++++.+..++..-
T Consensus 558 ~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~ 637 (778)
T 3opb_A 558 TPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP 637 (778)
T ss_dssp SSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG
T ss_pred CCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Confidence 221 1266888888888765421 1 233 258899999999999999999999999998643
Q ss_pred C---hhhHH---H---HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh--H-HHh-hhhHHHHHhhhcC--CChHHHH
Q 006898 429 G---VGFFD---D---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--E-WAM-QHITPQVLEMINN--PHYLYRM 493 (626)
Q Consensus 429 ~---~~~~~---~---~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~-~~il~~l~~~l~~--~~~~vR~ 493 (626)
. ..++. + .=++.+..+++..+..+|.+|+.+++.+...... . ... ...++.+..++.+ ++..+|.
T Consensus 638 e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~ 717 (778)
T 3opb_A 638 LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQ 717 (778)
T ss_dssp GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHH
Confidence 2 12221 1 1377888999999999999999999998654322 1 112 3577888888888 8999999
Q ss_pred HHHHHHHHhcccc
Q 006898 494 TILRAISLLAPVM 506 (626)
Q Consensus 494 ~a~~~l~~i~~~~ 506 (626)
.++.++.++++..
T Consensus 718 R~~~~l~NL~~~~ 730 (778)
T 3opb_A 718 RLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998743
No 61
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.50 E-value=7.8e-11 Score=133.61 Aligned_cols=367 Identities=7% Similarity=0.022 Sum_probs=231.0
Q ss_pred CHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc---h---------------h
Q 006898 176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---Q---------------D 237 (626)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~---------------~ 237 (626)
++.||...+.+++.++....+ ..|+.+++.+...++ .++..+..++..|..+.+.+.. + .
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~ 190 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK 190 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 478999999999999988655 457888888888886 4556677788888877754321 0 0
Q ss_pred hhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHH-hcCCChHHHHHHHHHhHHHHHHhh-Ch
Q 006898 238 CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVR-LLRDNEAEVRIAAAGKVTKFCRIL-NP 313 (626)
Q Consensus 238 ~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~-~~ 313 (626)
..+.+++.+...+. ..+..++..+.+++.......+.. .....+++.+.+ ++. ++++|..|++++..+...- ++
T Consensus 191 ~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~ 268 (1049)
T 3m1i_C 191 EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQ 268 (1049)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCc
Confidence 12234444444443 346778999999888765543322 122456776663 332 6799999999998887641 22
Q ss_pred H------HH---HHhhHHHHHH--------------hccCCCHHHHHHHHHHHHhhhhhhc--------HHHHHHhHHHH
Q 006898 314 E------LA---IQHILPCVKE--------------LSSDSSQHVRSALASVIMGMAPLLG--------KDATIEQLLPI 362 (626)
Q Consensus 314 ~------~~---~~~l~~~l~~--------------l~~d~~~~vr~~~~~~l~~l~~~~~--------~~~~~~~l~~~ 362 (626)
. .+ ...++..+.. ..++.++.+...+++.+..++.... .......+++.
T Consensus 269 ~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 348 (1049)
T 3m1i_C 269 DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQY 348 (1049)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Confidence 1 11 0112222211 1134455666667766665543221 12233456777
Q ss_pred HHHhhcCCCHHHHHHHHHhhHHHHhhh-----chhh---HHhhHHHHHHHHhc---CC-------------------ChH
Q 006898 363 FLSLLKDEFPDVRLNIISKLDQVNQVI-----GIDL---LSQSLLPAIVELAE---DR-------------------HWR 412 (626)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~L~~~~~~~-----~~~~---~~~~i~~~l~~~~~---~~-------------------~~~ 412 (626)
++.+...++.+++..++..+..+.+.+ .... +...+++.+...+. |. .|.
T Consensus 349 ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~ 428 (1049)
T 3m1i_C 349 LIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ 428 (1049)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHH
Confidence 777777778899999998888776632 1111 11333444443321 11 134
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhhc--
Q 006898 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMIN-- 485 (626)
Q Consensus 413 ~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~--d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~-- 485 (626)
.|.++...+..++. .+.....+.+.+.+...+. ..++..|++++.+++.+....+.. .+...+++.+..+..
T Consensus 429 ~~~~~~~~L~~l~~-~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~ 507 (1049)
T 3m1i_C 429 LYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKK 507 (1049)
T ss_dssp HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhh
Confidence 56677777777764 3444455666777766665 367889999999999987655543 123455555554332
Q ss_pred ---CCChHHHHHHHHHHHHhccccCh-HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898 486 ---NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (626)
Q Consensus 486 ---~~~~~vR~~a~~~l~~i~~~~~~-~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~ 547 (626)
++.+.+|..++.+++...+.+.. ..+...+++.+...+.|+++.||..|+.++.++....+.
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556666788999987754322 246677888888899999999999999999999987654
No 62
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.49 E-value=2e-09 Score=114.68 Aligned_cols=272 Identities=10% Similarity=-0.023 Sum_probs=181.7
Q ss_pred chHHHHHHhcC---CChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCC--------CHHHHHHHHHHHHhhhh
Q 006898 280 DLVPAYVRLLR---DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS--------SQHVRSALASVIMGMAP 348 (626)
Q Consensus 280 ~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--------~~~vr~~~~~~l~~l~~ 348 (626)
..+..+...+. ..++.+|.+|+.+++.+....+.+ . +..|...+.+. ++.+|..++-.|+.+.-
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-~----~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~ 466 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-T----TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM 466 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-H----HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-H----HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence 34555555554 456899999999999987766543 2 33333333332 26788888888887654
Q ss_pred hhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 006898 349 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (626)
Q Consensus 349 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 428 (626)
.-+.+ .+.+.+...+.|++..+|..|+.+|+.+.-..|.+...+.++..+. .+.+..+|..+...++.+. +
T Consensus 467 GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~ 537 (963)
T 4ady_A 467 GSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--Y 537 (963)
T ss_dssp TCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--T
T ss_pred CCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--C
Confidence 33433 3455566677777778888899999987655555443344444333 4556778888888887764 3
Q ss_pred ChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHh-hhcCCChHHHHHHHHHHHHhccccC
Q 006898 429 GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMG 507 (626)
Q Consensus 429 ~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~-~l~~~~~~vR~~a~~~l~~i~~~~~ 507 (626)
|.....+.++ ..+..+.++.+|..++.+++--+...|... .+..|+. +.+|++..+|..|+.+++.+.-.
T Consensus 538 g~~e~~~~li---~~L~~~~dp~vRygaa~alglAyaGTGn~~----aIq~LL~~~~~d~~d~VRraAViaLGlI~~g-- 608 (963)
T 4ady_A 538 GRQELADDLI---TKMLASDESLLRYGGAFTIALAYAGTGNNS----AVKRLLHVAVSDSNDDVRRAAVIALGFVLLR-- 608 (963)
T ss_dssp TCGGGGHHHH---HHHHHCSCHHHHHHHHHHHHHHTTTSCCHH----HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS--
T ss_pred CChHHHHHHH---HHHHhCCCHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHhccCCcHHHHHHHHHHHHhhccC--
Confidence 4433222222 233457889999999988877666556543 3333333 45688889999999999987532
Q ss_pred hHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCcccccccccCchhHHHHHHH
Q 006898 508 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLAL 587 (626)
Q Consensus 508 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al 587 (626)
.. +.+...+..+.++.++.||..++.+||.+....+ ...++..|. ++..|+|..||. .|..||
T Consensus 609 ~~---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~----~~~aid~L~-~L~~D~d~~Vrq---------~Ai~AL 671 (963)
T 4ady_A 609 DY---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG----LQSAIDVLD-PLTKDPVDFVRQ---------AAMIAL 671 (963)
T ss_dssp SC---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC----CHHHHHHHH-HHHTCSSHHHHH---------HHHHHH
T ss_pred CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC----cHHHHHHHH-HHccCCCHHHHH---------HHHHHH
Confidence 11 2233333345678899999999999999864322 256778888 999999999999 899888
Q ss_pred HHHH
Q 006898 588 NYCH 591 (626)
Q Consensus 588 ~~~~ 591 (626)
+.+.
T Consensus 672 G~Ig 675 (963)
T 4ady_A 672 SMIL 675 (963)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 8774
No 63
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.1e-12 Score=121.55 Aligned_cols=193 Identities=14% Similarity=0.175 Sum_probs=151.7
Q ss_pred HHHhcCCccchhHHHhhHhHH-hcCCCC-----hHHHHHHHHHHHHhc-CCCCHHHHHHHHHhHHHHHHhhC-c--c-ch
Q 006898 131 KRLAAGEWFTARVSACGLFHI-AYPSAP-----DILKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVE-P--A-HL 199 (626)
Q Consensus 131 ~~l~~~~~~~~r~~a~~~l~~-~~~~~~-----~~~~~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~-~--~-~~ 199 (626)
.+.+.+.+|..|..+...+.. +....+ .....+++..+...+ +|.+..||..++.+++.++..++ + . .+
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 334456667777777766666 553322 122256777888888 79999999999999999999887 4 2 45
Q ss_pred hhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch-h--hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC-
Q 006898 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-D--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE- 275 (626)
Q Consensus 200 ~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~--~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~- 275 (626)
...++|.+...++|..+.||..+..++..+++..++. . +.+.+++.+...+++++|.+|..++..++.+....+..
T Consensus 102 ~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcc
Confidence 5678999999999999999999999999999887542 1 25578888888899999999999999999999887642
Q ss_pred ----ccc-cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHh
Q 006898 276 ----PTR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 327 (626)
Q Consensus 276 ----~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l 327 (626)
... ..++|.+.+++.|++++||.+|..+++.++..+|... +.|++..+
T Consensus 182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~----~~p~l~~L 234 (249)
T 2qk1_A 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNT----FVKTLEHL 234 (249)
T ss_dssp HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGG----GHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH----HHHHHHHH
Confidence 134 7899999999999999999999999999999998754 35556554
No 64
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.48 E-value=3.1e-12 Score=120.08 Aligned_cols=224 Identities=14% Similarity=0.103 Sum_probs=152.2
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh---HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc--HH-
Q 006898 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KD- 353 (626)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--~~- 353 (626)
.-.+.+...++++++++|..|+.++..+...-.. .......+|.+.++++++++.+|..++.+++.++.... ..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4567778888888888888888888665543111 12234577888888888889999999999998875321 11
Q ss_pred HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh
Q 006898 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430 (626)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 430 (626)
......+|.+..+++++++.+|..++.+|+.+....... ......+|.+.+++.++++.+|..++.++..++.....
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 122347888999999999999999999999886543222 22345778888888888888888888888887643211
Q ss_pred ---hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 006898 431 ---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 503 (626)
Q Consensus 431 ---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~ 503 (626)
.......+|.+..++.+++..+|..|+.+|+.++..... ......++|.+.+++.++++.+|..++.++++++
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 112234577777888888888888888888877632111 1122345666666666666666666666666554
No 65
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.47 E-value=2.5e-11 Score=124.62 Aligned_cols=359 Identities=14% Similarity=0.143 Sum_probs=242.4
Q ss_pred HHHHHHHhhcccC-chhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHH
Q 006898 222 AVEGCAALGKLLE-PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVR 297 (626)
Q Consensus 222 a~~~l~~l~~~~~-~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr 297 (626)
++..|..+.+..+ +..+...-+|.+..++.+.+..++..++.+|..++..-. ........+|.++.+++..+++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq 107 (584)
T 3l6x_A 28 SLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVH 107 (584)
T ss_dssp ------------CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHH
T ss_pred hHHHHHHHHhcCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHH
Confidence 3444444444322 334556678888888899999999999999988874210 011233578999999999999999
Q ss_pred HHHHHhHHHHHHhhChH----HHHHhhHHHHHHhccC-CCHHHHHHHHHHHHhhhhhhc-HHHHHHhHHHHHHHhh----
Q 006898 298 IAAAGKVTKFCRILNPE----LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLL---- 367 (626)
Q Consensus 298 ~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l---- 367 (626)
..|+.+|..++..-+.+ ......+|.|.+++.+ .+..++..++.++..++..-. +.......+|.+..++
T Consensus 108 ~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~ 187 (584)
T 3l6x_A 108 LGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPH 187 (584)
T ss_dssp HHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccc
Confidence 99999999998631111 2234567888888875 678899999989998876322 2222334567776655
Q ss_pred --------------cCCCHHHHHHHHHhhHHHHhhhch--hhHH--hhHHHHHHHHhc------CCChHHHHHHHHHHHH
Q 006898 368 --------------KDEFPDVRLNIISKLDQVNQVIGI--DLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPL 423 (626)
Q Consensus 368 --------------~d~~~~vr~~a~~~L~~~~~~~~~--~~~~--~~i~~~l~~~~~------~~~~~~r~~~~~~l~~ 423 (626)
...++.|+..|..+|..+...-.. ..+. ..+++.|..+++ +.+......++.++..
T Consensus 188 sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~N 267 (584)
T 3l6x_A 188 SGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN 267 (584)
T ss_dssp HCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence 123579999999999998753211 1111 245566666654 3566777777777777
Q ss_pred HHHhhChh----------------------------hHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHhCh-----
Q 006898 424 LASQLGVG----------------------------FFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP----- 469 (626)
Q Consensus 424 l~~~~~~~----------------------------~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~----- 469 (626)
++.....+ .+....++.++.++. ..+..+++.|+.+|..++..-+.
T Consensus 268 Ls~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~ 347 (584)
T 3l6x_A 268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYI 347 (584)
T ss_dssp HHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred hhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHH
Confidence 66442100 012345677788884 45789999999999999742111
Q ss_pred --HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh-HHhhhcHHHHHhhhCCCC--------CchHHHHHHHHH
Q 006898 470 --EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDR--------VPNIKFNVAKVL 538 (626)
Q Consensus 470 --~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~-~~~~~~~l~~l~~~l~d~--------~~~vR~~a~~~l 538 (626)
.......+|.|.+++.+++..++..++.++++++..... ..+....+|.|..++.+. ..+++..|+.+|
T Consensus 348 ~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL 427 (584)
T 3l6x_A 348 RSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI 427 (584)
T ss_dssp HHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHH
Confidence 112256799999999999999999999999999875543 345567899999999876 357889999999
Q ss_pred HHHHhhhcc---chhhhcccchHHhhhccCC--CcccccccccCchhHHHHHHHHHH
Q 006898 539 QSLIPIVDQ---SVSTFSVSPFSFMLYLNVN--NFNVGFIFAAFPLVLFSCLALNYC 590 (626)
Q Consensus 539 ~~i~~~~~~---~~~~~~i~~~l~~~l~~d~--d~~vr~~~~~~~~~~~a~~al~~~ 590 (626)
+++...-.. .......+|.|. .++.+. ...++. +|+.+|..+
T Consensus 428 ~NL~a~~~~~~~~I~~~g~I~~Lv-~LL~s~~~~~~v~k---------~Aa~vL~nl 474 (584)
T 3l6x_A 428 NEVIAENLEAAKKLRETQGIEKLV-LINKSGNRSEKEVR---------AAALVLQTI 474 (584)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHH-HHHTCSSSCHHHHH---------HHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHCCChHHHH-HHHhCCCCChHHHH---------HHHHHHHHH
Confidence 988744221 133456788888 777664 667777 888888876
No 66
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.47 E-value=2.6e-12 Score=120.61 Aligned_cols=224 Identities=14% Similarity=0.096 Sum_probs=174.4
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hh
Q 006898 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL 393 (626)
Q Consensus 320 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~ 393 (626)
-++.+..++.+.++.+|..++..+..+...-.. .......+|.+..+++++++.+|..++.+|+.+...... ..
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 356777777888999999999999665543111 122345789999999999999999999999999753211 12
Q ss_pred HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 394 ~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
.....+|.+.++++++++.+|..++.++..++..... .......+|.+..++.+++..+|..|+.+|+.++......
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 2345889999999999999999999999999764322 1233458899999999999999999999999998532111
Q ss_pred ---HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898 471 ---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (626)
Q Consensus 471 ---~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 543 (626)
.....++|.+.+++.++++.+|..++.++++++..... .......+|.+..++.+.++.+|..|+++|.++..
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 12367899999999999999999999999999853221 12345689999999999999999999999998753
No 67
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.47 E-value=1.4e-11 Score=125.79 Aligned_cols=336 Identities=10% Similarity=0.055 Sum_probs=199.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc---hhhh
Q 006898 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCV 239 (626)
Q Consensus 166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~ 239 (626)
+.+..+++++++.+|..++.+|..++..-.+ .......+|.+.+++.++++.++..|+.+|.+++...++ ....
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3344445555566666666666665532211 111223556666666666666666666666666653111 1113
Q ss_pred hhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhc--------CC--------ChHHHHHHH
Q 006898 240 AHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLL--------RD--------NEAEVRIAA 300 (626)
Q Consensus 240 ~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l--------~d--------~~~~vr~~a 300 (626)
...+|.+.+++. +++..++..++.+|..++..-... ... ..+|.+..++ .+ .++++...|
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 345666666665 556666666666666666431000 112 4566666666 21 134455577
Q ss_pred HHhHHHHHHhhChH---HHHH--hhHHHHHHhccC------CCHHHHHHHHHHHHhhhhh--------------------
Q 006898 301 AGKVTKFCRILNPE---LAIQ--HILPCVKELSSD------SSQHVRSALASVIMGMAPL-------------------- 349 (626)
Q Consensus 301 ~~~l~~l~~~~~~~---~~~~--~l~~~l~~l~~d------~~~~vr~~~~~~l~~l~~~-------------------- 349 (626)
+.+|..++.. ++ .+.+ ..+|.|..++.+ .+..++..++..+..++..
T Consensus 164 ~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 164 TGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 7777766653 21 1111 345555554432 2333444444334433210
Q ss_pred --------h------------------------cH-HHHHHhHHHHHHHhhcC-CCHHHHHHHHHhhHHHHhhhch----
Q 006898 350 --------L------------------------GK-DATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI---- 391 (626)
Q Consensus 350 --------~------------------------~~-~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~L~~~~~~~~~---- 391 (626)
+ |. .......++.+..++.+ .++.+++.|+.+|..++..-+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 0 00 01123456777777764 4689999999999999753222
Q ss_pred ---hhH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcCCc------hHHHHHHHHHH
Q 006898 392 ---DLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKV------YSIRDAAANNL 460 (626)
Q Consensus 392 ---~~~-~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~l~p~l~~~l~d~~------~~VR~~a~~~l 460 (626)
..+ ....+|.+.+++.+++.+++..++.++..++..-.. ..+....+|.+..++...+ .++...++.++
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l 401 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHH
Confidence 111 146789999999999999999999999999864322 2334567888999987764 36778888888
Q ss_pred HHHHHHhChH---HHhhhhHHHHHhhhcCC-ChHHHHHHHHHHHHhcc
Q 006898 461 KRLAEEFGPE---WAMQHITPQVLEMINNP-HYLYRMTILRAISLLAP 504 (626)
Q Consensus 461 ~~l~~~~~~~---~~~~~il~~l~~~l~~~-~~~vR~~a~~~l~~i~~ 504 (626)
+.+...-... ......++.+.+++.++ +..++..|+..+.++..
T Consensus 402 ~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 8887543221 12256789999999998 99999999999998765
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.46 E-value=2.3e-10 Score=121.76 Aligned_cols=331 Identities=11% Similarity=0.037 Sum_probs=221.3
Q ss_pred HHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCC
Q 006898 178 MVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ---DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 254 (626)
Q Consensus 178 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~ 254 (626)
..+-.++.+||-+-.... ...+..+.+.+. .+++.+|..|+.+++-+....+.+ ++..+...+.+.+
T Consensus 373 ~~k~sA~aSLGlIh~g~~-----~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~ 442 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNL-----LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENS 442 (963)
T ss_dssp HHHHHHHHHHHHHTSSCT-----TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhhccCch-----HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCcc
Confidence 456666677776644222 234555555565 567899999999999887766642 3444444443333
Q ss_pred --------HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHH
Q 006898 255 --------WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE 326 (626)
Q Consensus 255 --------~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 326 (626)
..+|..++..||.+....+ .+++.+.+...+.|.+..+|..|+.+|+.+.--.+.....+.++..+.
T Consensus 443 ~~~~~~~~~~ir~gAaLGLGla~~GS~----~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~- 517 (963)
T 4ady_A 443 GTSGDEDVDVLLHGASLGIGLAAMGSA----NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ- 517 (963)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSTTCC----CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh-
Confidence 6799999988887654333 246777788888777778888899999887554455555455555443
Q ss_pred hccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh
Q 006898 327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406 (626)
Q Consensus 327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~ 406 (626)
++.+..+|+.++..|+.+. +|.+...+.++. .+..+.++.+|..++-+++.-.-..|.....+. .|..+.
T Consensus 518 --e~~~e~vrR~aalgLGll~--~g~~e~~~~li~---~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~---LL~~~~ 587 (963)
T 4ady_A 518 --ETQHGNITRGLAVGLALIN--YGRQELADDLIT---KMLASDESLLRYGGAFTIALAYAGTGNNSAVKR---LLHVAV 587 (963)
T ss_dssp --HCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHH---HHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHH---HHHHHH
T ss_pred --ccCcHHHHHHHHHHHHhhh--CCChHHHHHHHH---HHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHH---HHHHhc
Confidence 5667899999988888764 343333333322 223478899999999998876666665432222 233334
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC
Q 006898 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 486 (626)
Q Consensus 407 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~ 486 (626)
+|.+..+|..++.+++.+.-. ... .+...+..+.++.++.||..++.++|.++..-+ ...+++.|..+.+|
T Consensus 588 ~d~~d~VRraAViaLGlI~~g--~~e---~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~----~~~aid~L~~L~~D 658 (963)
T 4ady_A 588 SDSNDDVRRAAVIALGFVLLR--DYT---TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG----LQSAIDVLDPLTKD 658 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTSS--SCS---SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC----CHHHHHHHHHHHTC
T ss_pred cCCcHHHHHHHHHHHHhhccC--CHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC----cHHHHHHHHHHccC
Confidence 677888999999999877532 221 122233345678899999999999999874433 24578888889999
Q ss_pred CChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCC--CCchHHHHHHHHHHHHH
Q 006898 487 PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLI 542 (626)
Q Consensus 487 ~~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~i~ 542 (626)
++..||++|+.+++.+...-... .....++..|.+...| .++..|..+.-+.|-+-
T Consensus 659 ~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 659 PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 99999999999999997533221 1234455555565544 56778888888888764
No 69
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.44 E-value=5.1e-10 Score=124.10 Aligned_cols=392 Identities=9% Similarity=0.057 Sum_probs=233.8
Q ss_pred CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCch-hHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCC
Q 006898 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK 253 (626)
Q Consensus 175 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~ 253 (626)
..+.+|...+.++..++....++ .|+.+++.+..+++.++. ......++.|..+.+.+..... ..+.
T Consensus 102 ~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~-----------~~~~ 169 (980)
T 3ibv_A 102 EPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV-----------LKTD 169 (980)
T ss_dssp SCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS-----------CCCH
T ss_pred CcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc-----------ccCH
Confidence 45779999999999999886553 456677777777665433 2333445555544433321100 0000
Q ss_pred CHHHHHHHH-HH-----HHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH-HHhhHHHHHH
Q 006898 254 SWRVRYMVA-NQ-----LYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-IQHILPCVKE 326 (626)
Q Consensus 254 ~~~vR~~a~-~~-----l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~ 326 (626)
....|..-. .. +..+. +..+..+.......+++++..+++++..+...++...+ ...+++.+.+
T Consensus 170 ~~~~r~~~lkd~m~~~~~~~i~---------~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~ 240 (980)
T 3ibv_A 170 VQIQKDNLVKDAIRANDMSDIV---------SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYS 240 (980)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHhccHHHHH---------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHH
Confidence 001121110 01 11111 11222222222235678888999999998887776633 2567777777
Q ss_pred hccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHH------HHHhhc-CCCHHHHHHHHHhhHHHHhhh-----ch---
Q 006898 327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI------FLSLLK-DEFPDVRLNIISKLDQVNQVI-----GI--- 391 (626)
Q Consensus 327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~------l~~~l~-d~~~~vr~~a~~~L~~~~~~~-----~~--- 391 (626)
++.+ +.+|.++++++..+...-........++.. +..+.. +.+.++.+..++.+..++..+ .+
T Consensus 241 ~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~ 318 (980)
T 3ibv_A 241 FLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSEL 318 (980)
T ss_dssp HTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred HcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 7765 789999999999887643221111112111 111111 466677655554443332211 11
Q ss_pred --h------hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---h-----h---hHHHHHHHHHHHHhc------
Q 006898 392 --D------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---V-----G---FFDDKLGALCMQWLQ------ 446 (626)
Q Consensus 392 --~------~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~-----~---~~~~~l~p~l~~~l~------ 446 (626)
+ .....+++.+..+..++++.+-..++.++..+..... . . .+...+++.+...+.
T Consensus 319 ~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~ 398 (980)
T 3ibv_A 319 SPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE 398 (980)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCC
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccc
Confidence 0 1224678888888888888888888888877665421 1 1 122344454444331
Q ss_pred -CC----c-----hHHHHHHHHHHHHHHHHhChHHHhh----hhHHHHHhhhc---CCChHHHHHHHHHHHHhccccChH
Q 006898 447 -DK----V-----YSIRDAAANNLKRLAEEFGPEWAMQ----HITPQVLEMIN---NPHYLYRMTILRAISLLAPVMGSE 509 (626)
Q Consensus 447 -d~----~-----~~VR~~a~~~l~~l~~~~~~~~~~~----~il~~l~~~l~---~~~~~vR~~a~~~l~~i~~~~~~~ 509 (626)
|. + .+.|.... .+...+..++++.... .+.+.+.+.+. +.+|+.+.+++.+++.+++.+...
T Consensus 399 ~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~ 477 (980)
T 3ibv_A 399 WDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGP 477 (980)
T ss_dssp CCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSG
T ss_pred cccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 11 1 24676666 7777777888776555 55555555552 457999999999999999976531
Q ss_pred --------HhhhcHHHHHhhhCC-----CCCchHHHHHHHHHHHHHhhhccc-hhhhcccchHHhh--hccCCCcccccc
Q 006898 510 --------ITCSRLLPVVINASK-----DRVPNIKFNVAKVLQSLIPIVDQS-VSTFSVSPFSFML--YLNVNNFNVGFI 573 (626)
Q Consensus 510 --------~~~~~~l~~l~~~l~-----d~~~~vR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~~--l~~d~d~~vr~~ 573 (626)
...+.+++.+..+++ ++.+.||..+++++++....+... .+.+.+++.+. . ...+++..|+.
T Consensus 478 ~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll-~~~gl~~~~~~V~~- 555 (980)
T 3ibv_A 478 DAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFV-GPRGIHNTNERVRP- 555 (980)
T ss_dssp GGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHT-STTTTTCCCTTTHH-
T ss_pred ccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHh-ccccccCCChhHHH-
Confidence 134457777777654 888999999999999999888642 33344444444 4 45588899999
Q ss_pred cccCchhHHHHHHHHHHHHHhhcCCcc
Q 006898 574 FAAFPLVLFSCLALNYCHRWWRKQSVP 600 (626)
Q Consensus 574 ~~~~~~~~~a~~al~~~~~~~~~~~~~ 600 (626)
.|+.++..+.+-.++.-.|
T Consensus 556 --------~a~~af~~f~~~~~~~L~~ 574 (980)
T 3ibv_A 556 --------RAWYLFYRFVKSIKKQVVN 574 (980)
T ss_dssp --------HHHHHHHHHHHHTTTTCSS
T ss_pred --------HHHHHHHHHHHHhhHHhhh
Confidence 9999999987766554333
No 70
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.43 E-value=1e-10 Score=117.48 Aligned_cols=247 Identities=13% Similarity=0.053 Sum_probs=175.6
Q ss_pred HHHHhHHHHHHhhC--hHHHHHhhHHHHHHhcc-----------CCCHHHHHHHHHHHHhhhhhhc--HHHH--HHhHHH
Q 006898 299 AAAGKVTKFCRILN--PELAIQHILPCVKELSS-----------DSSQHVRSALASVIMGMAPLLG--KDAT--IEQLLP 361 (626)
Q Consensus 299 ~a~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~-----------d~~~~vr~~~~~~l~~l~~~~~--~~~~--~~~l~~ 361 (626)
.|+.+|..++..-. ........++.+..++. +.+..++..++.+|..++..-. +..+ ....+|
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 67777777643211 01122344556665552 1346789999999999885322 1222 234689
Q ss_pred HHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hh-HHhhHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhh-C--hhhH
Q 006898 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL-LSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQL-G--VGFF 433 (626)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~-~~~~i~~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~-~--~~~~ 433 (626)
.+..+|...+++++..|+.+|..+...-+. .. .....+|.|.++ ..+.+..++..++.++..++... + ....
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999999999999999999998653111 11 224578999996 45678899999999999888632 1 2222
Q ss_pred -HHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHH--hChH----HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHh
Q 006898 434 -DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEE--FGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLL 502 (626)
Q Consensus 434 -~~~l~p~l~~~l~d~~~----~VR~~a~~~l~~l~~~--~~~~----~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i 502 (626)
....+|.+..++.+... .++..|+.+|..++.. .+++ ......+|.+.+++.+++..++..|+.++.++
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24578889999876554 4999999999999863 2222 12356789999999999999999999999999
Q ss_pred ccccCh---HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh
Q 006898 503 APVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (626)
Q Consensus 503 ~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 545 (626)
+..-.. .......+|.|..++.++++.+|..|+.+|.++....
T Consensus 407 a~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 407 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 742111 1234568999999999999999999999999998753
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.36 E-value=3.7e-10 Score=113.32 Aligned_cols=246 Identities=13% Similarity=0.061 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHh--CCCccccchHHHHHHhcC----------C-ChHHHHHHHHHhHHHHHHhhChH--HH--HHhhHH
Q 006898 260 MVANQLYELCEAV--GPEPTRMDLVPAYVRLLR----------D-NEAEVRIAAAGKVTKFCRILNPE--LA--IQHILP 322 (626)
Q Consensus 260 ~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~----------d-~~~~vr~~a~~~l~~l~~~~~~~--~~--~~~l~~ 322 (626)
.++.+|+.++..- .........++.+..++. + .++.++..|+.+|..++..-... .+ ....+|
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 6666666664210 000112346677777763 1 34789999999999998643211 22 135589
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhhhhhc---HHHHH-HhHHHHHHHhh-cCCCHHHHHHHHHhhHHHHhhh-c--hhhH
Q 006898 323 CVKELSSDSSQHVRSALASVIMGMAPLLG---KDATI-EQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVI-G--IDLL 394 (626)
Q Consensus 323 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~-~~l~~~l~~~l-~d~~~~vr~~a~~~L~~~~~~~-~--~~~~ 394 (626)
.|.+++.+.+..++..++.+|..++..-+ +..+. ...+|.+..+| ...++.++..++.+|..+.... + ....
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999875311 12222 24688888874 5568899999999998887622 1 1121
Q ss_pred -HhhHHHHHHHHhcCCCh----HHHHHHHHHHHHHHHh--hChh----hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006898 395 -SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQ--LGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (626)
Q Consensus 395 -~~~i~~~l~~~~~~~~~----~~r~~~~~~l~~l~~~--~~~~----~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l 463 (626)
....+|.|.+++.+.+. .++..+..++..++.. -+++ ......+|.+..++.+.+..++..|+.+|+.+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24688999999876542 5888888888888752 1221 12234688999999999999999999999999
Q ss_pred HHHhChH----HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcccc
Q 006898 464 AEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 506 (626)
Q Consensus 464 ~~~~~~~----~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~ 506 (626)
+.. .++ ......+|.|.+++..++..+|..|+.++.+++..-
T Consensus 407 a~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 407 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 732 121 233567999999999999999999999999998653
No 72
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.35 E-value=2e-08 Score=111.53 Aligned_cols=487 Identities=9% Similarity=0.059 Sum_probs=296.4
Q ss_pred cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccc----cCCc---c
Q 006898 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGV---E 82 (626)
Q Consensus 10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~----~~~~---~ 82 (626)
.+..+++.+.+++.+.|..|.+-|..+-.. ++ .+.....++. .+.++++|..++..+.+.+++ ++.. .
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p~-aw~~~~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~ 91 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PD-AWQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--TT-GGGGHHHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcC--cc-HHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 566778888777777999999888877332 22 2334444442 245789999999999876552 2211 1
Q ss_pred hhhcchHHHhhhhcCc-----chHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCC--
Q 006898 83 HAHVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS-- 155 (626)
Q Consensus 83 ~~~~l~~~l~~l~~~~-----~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~-- 155 (626)
..+.++..+....+++ ...+|...+.++..+++..-|+. ++.+++.+..+++.. ......+..++..+.+.
T Consensus 92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~-Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~ 169 (1023)
T 4hat_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-WPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVF 169 (1023)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh-chHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHH
Confidence 3455556555544443 35678888889988888654433 455666666665433 22333334443332211
Q ss_pred ------CChH-----------HHHHHHHHHHHhcC-CCCHHHHHHHHHhHHHHHHhhCccc-hhhhHHHHHH-HhhcCCc
Q 006898 156 ------APDI-----------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFE-DLTQDDQ 215 (626)
Q Consensus 156 ------~~~~-----------~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~ll~~l~-~l~~d~~ 215 (626)
.+.. ..+.+++.+...++ ..++.+...+.++++.+..-.+... ..+.+++.+. .++. +
T Consensus 170 ~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~ 247 (1023)
T 4hat_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--S 247 (1023)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--S
T ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--C
Confidence 1111 22445556655553 3467788889999999887665432 2245777777 7665 4
Q ss_pred hhHHHHHHHHHHHhhcc-c-Cch-hhhh-------hhHHHH-HHh-------------cCCCCHHHHHHHHHHHHHHHHH
Q 006898 216 DSVRLLAVEGCAALGKL-L-EPQ-DCVA-------HILPVI-VNF-------------SQDKSWRVRYMVANQLYELCEA 271 (626)
Q Consensus 216 ~~vr~~a~~~l~~l~~~-~-~~~-~~~~-------~i~~~l-~~~-------------~~d~~~~vR~~a~~~l~~l~~~ 271 (626)
+..|..|++++..+... . ++. .+.+ .+++.+ ... ..+.+.......+..+..+++.
T Consensus 248 ~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~ 327 (1023)
T 4hat_C 248 PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR 327 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 57999999999998863 2 221 1221 222222 110 1223455555666677666654
Q ss_pred hCCCccc----cchH----HHHHHhcCCChHHHHHHHHHhHHHHHHhhCh-----H---HHHHhhHHHHHHhccCC----
Q 006898 272 VGPEPTR----MDLV----PAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-----E---LAIQHILPCVKELSSDS---- 331 (626)
Q Consensus 272 ~~~~~~~----~~l~----~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----~---~~~~~l~~~l~~l~~d~---- 331 (626)
...-... ..++ ..++.....++.++-..++.-+..+.+.+-. . .+...+++.+.+-+.-+
T Consensus 328 ~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ 407 (1023)
T 4hat_C 328 NRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVL 407 (1023)
T ss_dssp HGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCC
T ss_pred HHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3321110 1222 2445555566778877788877777764321 1 12234444443322111
Q ss_pred -------CH---------------HHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC--CCHHHHHHHHHhhHHHHh
Q 006898 332 -------SQ---------------HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQ 387 (626)
Q Consensus 332 -------~~---------------~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~L~~~~~ 387 (626)
.| ..| .++..+....+ +...+.+.+.+...+.+ .++..|++++-+++.+.+
T Consensus 408 ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~ 482 (1023)
T 4hat_C 408 VVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISG 482 (1023)
T ss_dssp EEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHc
Confidence 11 122 44444444333 34556677777776664 579999999999999988
Q ss_pred hhchh---hHHhhHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006898 388 VIGID---LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAAN 458 (626)
Q Consensus 388 ~~~~~---~~~~~i~~~l~~~~~-----~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~l~p~l~~~l~d~~~~VR~~a~~ 458 (626)
....+ .+...++|.+..+.+ |+..++|..++..++...+-+.. ..+.+.++..++..+.|+++.|..+|++
T Consensus 483 ~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~ 562 (1023)
T 4hat_C 483 TMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACD 562 (1023)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 77654 233567777777765 34566777788888877665421 2234556777888888999999999999
Q ss_pred HHHHHHHHhChHH----------HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH
Q 006898 459 NLKRLAEEFGPEW----------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 510 (626)
Q Consensus 459 ~l~~l~~~~~~~~----------~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~ 510 (626)
++..+++..+... +.+.++..+.+...+-+...+..+.++++.+++..+...
T Consensus 563 al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 563 TFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp HHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence 9999999876543 234455555555666678888999999999999887543
No 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.31 E-value=1.7e-10 Score=124.56 Aligned_cols=283 Identities=13% Similarity=0.149 Sum_probs=217.5
Q ss_pred HHHHHHhHHHHHHhh-ChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH----HHHHHhHHHHHHHhhcCCC
Q 006898 297 RIAAAGKVTKFCRIL-NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEF 371 (626)
Q Consensus 297 r~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~ 371 (626)
+..+...+..+...- +.......+...+.+.+.++... ..++..+..+++.++. +.+.-.++|.++..+.|..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 455555565554421 11111124567777777776555 8888888888876642 4444456889999999999
Q ss_pred HHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCC
Q 006898 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK 448 (626)
Q Consensus 372 ~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~ 448 (626)
..||.+|..++..+...+.++.. ..++|.+.+.+.+. .|+.+..++..+..+++...... ....++|.+-.++.|.
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 187 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT 187 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC
Confidence 99999999999999999988876 78999999888655 69999999999999998763222 3467999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHH--hccccChHHhhhcHHHHHhhhCCCC
Q 006898 449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL--LAPVMGSEITCSRLLPVVINASKDR 526 (626)
Q Consensus 449 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~--i~~~~~~~~~~~~~l~~l~~~l~d~ 526 (626)
.++|..+|.+++..+|..+++.. ...++|.|.+.+.+|+. -..++..++. ++.... ......+.|.|.+.++++
T Consensus 188 k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~-~~~l~~~~p~l~r~l~~~ 263 (986)
T 2iw3_A 188 KKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVT-PATLSIMVPLLSRGLNER 263 (986)
T ss_dssp SHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCC-HHHHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeec-chhHHHHHHHHHhhhccC
Confidence 99999999999999999887653 46689999999999954 2333444442 222222 335678899999999999
Q ss_pred CchHHHHHHHHHHHHHhhhccc----hhhhcccchHHhh-hccCCCcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898 527 VPNIKFNVAKVLQSLIPIVDQS----VSTFSVSPFSFML-YLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRK 596 (626)
Q Consensus 527 ~~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~~-l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~ 596 (626)
...++..++-.+.++..-..++ .|.+.++|.+. + .-.-.|+++|. .+..|+.++....+.
T Consensus 264 ~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~-~~~~~~~~pe~r~---------~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 264 ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK-SNFATIADPEARE---------VTLRALKTLRRVGNV 328 (986)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHH-HHTTTCCSHHHHH---------HHHHHHHHHHHHHTC
T ss_pred cchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHH-HHhhccCCHHHHH---------HHHHHHHHHHHhhcc
Confidence 9999999999999999887764 77889999999 6 45678999999 999999999766544
No 74
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.29 E-value=7.4e-11 Score=107.17 Aligned_cols=184 Identities=16% Similarity=0.126 Sum_probs=120.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhH
Q 006898 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF 433 (626)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~ 433 (626)
.|.+..+++++++.+|..|+.+|..+...-.. .......+|.+.++++++++.+|..++.++..++.... ....
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 34455555555555555555555555422111 11112455666666666666666666666665542111 1112
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH-
Q 006898 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE- 509 (626)
Q Consensus 434 ~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~- 509 (626)
....+|.+..++.+++..+|..|+.+|+.++..... .......+|.+.+++.+++..+|..++.++++++......
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 173 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 234678888888988999999999999988753211 1123567899999999999999999999999998642211
Q ss_pred --HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898 510 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (626)
Q Consensus 510 --~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~ 543 (626)
......++.|..++.++++.+|..|+.+|..+..
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 2345688999999999999999999999998753
No 75
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.29 E-value=3.1e-13 Score=122.87 Aligned_cols=187 Identities=22% Similarity=0.233 Sum_probs=128.6
Q ss_pred HHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHH
Q 006898 169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN 248 (626)
Q Consensus 169 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~ 248 (626)
..+++|+++.||..++..+ +. ..+..+++|+++.||..+...+ +. +.+..
T Consensus 56 ~~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~ 105 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA 105 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred HHHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHH
Confidence 3567888999999888865 11 2356678899999998887643 21 24567
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhc
Q 006898 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS 328 (626)
Q Consensus 249 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~ 328 (626)
+++|+++.||..++..+ + . +.+..+++|+++.||..++..+ +. +.+..+.
T Consensus 106 ll~D~d~~VR~~aA~~l-------~-----~---~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~ 155 (244)
T 1lrv_A 106 LMFDEDREVRITVADRL-------P-----L---EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM 155 (244)
T ss_dssp TTTCSCHHHHHHHHHHS-------C-----T---GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred HHcCCCHHHHHHHHHhC-------C-----H---HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence 78899999998887743 1 1 2345667888899998887732 21 2345677
Q ss_pred cCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC
Q 006898 329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408 (626)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~ 408 (626)
+|+++.||.+++..+ +. +.+..+++|+++.||.+++..+ +. +.+..+++|
T Consensus 156 ~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D 205 (244)
T 1lrv_A 156 RDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHD 205 (244)
T ss_dssp TCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGC
T ss_pred cCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcC
Confidence 889999998887651 11 2344677888899998888764 11 245566788
Q ss_pred CChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006898 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (626)
Q Consensus 409 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~ 461 (626)
++|++|..+.+.++ .+.+..+ +|+++.||.++...||
T Consensus 206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 88988888887653 1344455 8888888888876554
No 76
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.28 E-value=6.1e-08 Score=107.13 Aligned_cols=480 Identities=8% Similarity=0.006 Sum_probs=259.5
Q ss_pred CCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhh----cCh---hhHHHhHHHHH
Q 006898 58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRE---SDLVDWYIPLV 130 (626)
Q Consensus 58 ~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~----~~~---~~~~~~l~~~l 130 (626)
+++++.|..|-+.|.++-. .++.|.....++. .+.++.+|.-|+..|....+. +++ ..+++.++.++
T Consensus 39 ~p~~~~r~qA~~~L~q~q~---sp~aw~~~~~iL~---~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l 112 (1073)
T 3gjx_A 39 HGEGAQQRMAQEVLTHLKE---HPDAWTRVDTILE---FSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLI 112 (1073)
T ss_dssp CSSHHHHHHHHHHHHTSSC---CSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc---CchHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHH
Confidence 4445556666666665533 2334443333322 234556666666666554432 232 22344455555
Q ss_pred HHHhcCC-----ccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--------
Q 006898 131 KRLAAGE-----WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-------- 197 (626)
Q Consensus 131 ~~l~~~~-----~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~-------- 197 (626)
.....++ ...++...+.+++.++.+.-+..++++++.+...++. ++..+...+..|..+.+.+...
T Consensus 113 ~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~ 191 (1073)
T 3gjx_A 113 IKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQV 191 (1073)
T ss_dssp HHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHH
T ss_pred HHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5443322 1233444444444444332122233334434333322 2334444555555554442210
Q ss_pred ----------chhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCchh-hhhhhHHHH-HHhcCCCCHHHHHHHHHH
Q 006898 198 ----------HLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVI-VNFSQDKSWRVRYMVANQ 264 (626)
Q Consensus 198 ----------~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l-~~~~~d~~~~vR~~a~~~ 264 (626)
...+.+++.+...+.+ .++.+...+++++..+.+-++-.. ..+.+++.+ ...+. ++..|..++++
T Consensus 192 r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dc 269 (1073)
T 3gjx_A 192 KAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKC 269 (1073)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHH
Confidence 0123455555555543 466788889999999988877643 235577766 45554 56799999999
Q ss_pred HHHHHHHhCCCccccchHHHH---H----Hhc-------------CCChHHHHHHHHHhHHHHHHhh------ChH--HH
Q 006898 265 LYELCEAVGPEPTRMDLVPAY---V----RLL-------------RDNEAEVRIAAAGKVTKFCRIL------NPE--LA 316 (626)
Q Consensus 265 l~~l~~~~~~~~~~~~l~~~l---~----~~l-------------~d~~~~vr~~a~~~l~~l~~~~------~~~--~~ 316 (626)
|..+...-. +.+.+.+...+ + .++ .+++.+.-.+....+..+++.. +++ ..
T Consensus 270 L~eIv~k~~-~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~ 348 (1073)
T 3gjx_A 270 LTEIAGVSV-SQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREA 348 (1073)
T ss_dssp HHHHHHSCS-GGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHhccc-cchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHH
Confidence 999876411 11111221111 1 111 2333343333334443333321 111 11
Q ss_pred HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---------------------------HHHHhHHHHHHHhhcC
Q 006898 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---------------------------ATIEQLLPIFLSLLKD 369 (626)
Q Consensus 317 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---------------------------~~~~~l~~~l~~~l~d 369 (626)
....+.++......++..+-......+..+...+-.+ .+...+...+..-+.-
T Consensus 349 l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~ 428 (1073)
T 3gjx_A 349 LMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAK 428 (1073)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 1223334455566677777777777766665432111 1122233333333321
Q ss_pred C-C-------------------H--HHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHH
Q 006898 370 E-F-------------------P--DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLA 425 (626)
Q Consensus 370 ~-~-------------------~--~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~r~~~~~~l~~l~ 425 (626)
+ + . .++...-.+|..+. .++.+.....+++.+.+... ..+|..+.+++-+++.++
T Consensus 429 P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa 507 (1073)
T 3gjx_A 429 PEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS 507 (1073)
T ss_dssp SCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT
T ss_pred CccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH
Confidence 1 0 0 12222223333332 33444444556666665544 357999999999999998
Q ss_pred HhhChh---hHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhhcCCChHHHHHHH
Q 006898 426 SQLGVG---FFDDKLGALCMQWLQDK-----VYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTIL 496 (626)
Q Consensus 426 ~~~~~~---~~~~~l~p~l~~~l~d~-----~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~~~~~vR~~a~ 496 (626)
....+. .+...+++.+..+...+ ...++...+.++|.+.+.+... .+...++..+.+.+.++++.++.+|+
T Consensus 508 g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~ 587 (1073)
T 3gjx_A 508 GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMAC 587 (1073)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHH
T ss_pred CcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 776642 34556677777666433 3446666678888887765433 24566777777888899999999999
Q ss_pred HHHHHhccccChHH----------hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc
Q 006898 497 RAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (626)
Q Consensus 497 ~~l~~i~~~~~~~~----------~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~ 548 (626)
.++..+++.|+... +.+.++..+.....+=.+.-.....++++.++...++.
T Consensus 588 ~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 588 DTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 99999998877653 44555555555556666777778888899888887763
No 77
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.27 E-value=9.2e-13 Score=119.76 Aligned_cols=188 Identities=23% Similarity=0.188 Sum_probs=113.2
Q ss_pred HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHH
Q 006898 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (626)
Q Consensus 91 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ 170 (626)
+..++.|+++.||..++..+ ++ ..+..+.+|+++.||..++..+. . +.+..
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L~-------~-------~~L~~ 105 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRLP-------R-------EQLSA 105 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTSC-------S-------GGGGG
T ss_pred HHHHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHCC-------H-------HHHHH
Confidence 34556788888888777643 22 12455667777777776665421 1 23556
Q ss_pred hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc
Q 006898 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS 250 (626)
Q Consensus 171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~ 250 (626)
+++|+++.||..++..+ +. +.+..+++|+++.||..+...+ +. +.+..+.
T Consensus 106 ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~ 155 (244)
T 1lrv_A 106 LMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM 155 (244)
T ss_dssp TTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred HHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence 67777788887777643 11 1244567777777777766531 11 1334566
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccC
Q 006898 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD 330 (626)
Q Consensus 251 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d 330 (626)
+|+++.||..++..+ + . +.+..+++|++++||..++..+ + .+.+..+++|
T Consensus 156 ~D~d~~VR~~aa~~l-------~-----~---~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D 205 (244)
T 1lrv_A 156 RDEDRQVRKLVAKRL-------P-----E---ESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLHD 205 (244)
T ss_dssp TCSCHHHHHHHHHHS-------C-----G---GGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGGC
T ss_pred cCCCHHHHHHHHHcC-------C-----H---HHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcC
Confidence 777777777776641 1 1 2334566777777777777653 1 1345566777
Q ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhH
Q 006898 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (626)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~ 383 (626)
++|.||.+++..++ .+.+..+ +|+++.||.++..+|+
T Consensus 206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 77777777776532 1334444 7777777777776654
No 78
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.25 E-value=5.3e-10 Score=101.49 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hh
Q 006898 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF 432 (626)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~ 432 (626)
.+|.+..++.++++.+|..|+.+|+.+...... .......+|.+.+++++++..+|..++.++..++..... ..
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444444444444444444444321100 011122445555555555555555555555555431110 11
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (626)
Q Consensus 433 ~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~ 504 (626)
.....+|.+..++.+++..+|..|+.+|+.++...... ......++.+.+++.+++..+|..++.++.+++.
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 22346788888888888889999999998887532111 1235678889999999999999999999988764
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.20 E-value=4.7e-09 Score=113.41 Aligned_cols=255 Identities=14% Similarity=0.195 Sum_probs=196.0
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH
Q 006898 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 316 (626)
Q Consensus 241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 316 (626)
.++..+.+...++... +.++.+++.++...+... +.-.++|.++..+.|....||.+|..+...+...++++..
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 5666677777665444 777777777776654321 1124678888889999999999999999999999998876
Q ss_pred HHhhHHHHHHhccCC-CHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhh
Q 006898 317 IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (626)
Q Consensus 317 ~~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~ 393 (626)
..++|.+...+.+. .|+.+.+++.++..+++..+.. ...+.++|.+..++.|..++|..+|..++..++..++...
T Consensus 132 -~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 132 -KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred -HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence 77888887766544 6999999999999998765332 2356899999999999999999999999999999998877
Q ss_pred HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh-hC---hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh
Q 006898 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (626)
Q Consensus 394 ~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~-~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~ 469 (626)
+ +..+|.|.+.+.+++. .-+++..++.. +- ......-+.|++.+.|.++...+++.++-.+.++++.+.+
T Consensus 211 ~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 211 I-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp T-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred h-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 6 6688999999998853 22333333321 11 1123456899999999999999999999999999998765
Q ss_pred HH----HhhhhHHHHHhhhcC-CChHHHHHHHHHHHHhcc
Q 006898 470 EW----AMQHITPQVLEMINN-PHYLYRMTILRAISLLAP 504 (626)
Q Consensus 470 ~~----~~~~il~~l~~~l~~-~~~~vR~~a~~~l~~i~~ 504 (626)
.. +...++|.+.+.... .++.+|..+-+++..+.+
T Consensus 285 ~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 285 PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 43 456677777765544 689999999988888744
No 80
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.19 E-value=4.6e-09 Score=102.20 Aligned_cols=215 Identities=12% Similarity=0.066 Sum_probs=158.2
Q ss_pred CHHHHHHHHHHHHhhhhhhc--HHHH--HHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hh-HHhhHHHHHH
Q 006898 332 SQHVRSALASVIMGMAPLLG--KDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL-LSQSLLPAIV 403 (626)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~-~~~~i~~~l~ 403 (626)
+..++..++.+|..++..-. +..+ ....+|.+..+|.+++++++..|+.+|..+...-+. .. .....+|.|.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46788888888888874322 1222 234689999999999999999999999988653111 11 2245788888
Q ss_pred HH-hcCCChHHHHHHHHHHHHHHHhh-C--hhhH-HHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHHh--ChH--
Q 006898 404 EL-AEDRHWRVRLAIIEYIPLLASQL-G--VGFF-DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEEF--GPE-- 470 (626)
Q Consensus 404 ~~-~~~~~~~~r~~~~~~l~~l~~~~-~--~~~~-~~~l~p~l~~~l~d~~~----~VR~~a~~~l~~l~~~~--~~~-- 470 (626)
++ ..+.+..++..++.++..++... + .... ....+|.+..++.+... .++..|+.+|..++..+ +++
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 86 56678888988888888887622 1 1222 24578889999876554 59999999999998631 222
Q ss_pred --HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh
Q 006898 471 --WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (626)
Q Consensus 471 --~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 545 (626)
......+|.+.+++.+++..++..++.++.+++..... .......+|.|..++.++++.+|..|+.+|.++...-
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 12345799999999999999999999999999843211 1234568999999999999999999999999998764
Q ss_pred c
Q 006898 546 D 546 (626)
Q Consensus 546 ~ 546 (626)
+
T Consensus 337 ~ 337 (354)
T 3nmw_A 337 P 337 (354)
T ss_dssp C
T ss_pred H
Confidence 3
No 81
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.06 E-value=1.5e-07 Score=107.32 Aligned_cols=328 Identities=10% Similarity=-0.028 Sum_probs=178.6
Q ss_pred hhHHHHHHHHHHHhhcccCchhhh---hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc----cccch----HHH
Q 006898 216 DSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDL----VPA 284 (626)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l----~~~ 284 (626)
..++..+++++..+....+..... ..+++.+..++.+ +.+|..|+++|..++....... ....+ +..
T Consensus 221 ~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~ 298 (1204)
T 3a6p_A 221 CRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHY 298 (1204)
T ss_dssp HHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHH
Confidence 457777888887776655543222 2477777777765 4589999999999886432111 01111 112
Q ss_pred HHHhc--------CCChHHHHHHHHHhHHHHHHhhC----------hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhh
Q 006898 285 YVRLL--------RDNEAEVRIAAAGKVTKFCRILN----------PELAIQHILPCVKELSSDSSQHVRSALASVIMGM 346 (626)
Q Consensus 285 l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~----------~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l 346 (626)
++... .|.+.++++...+.+..++..+. .......+++.+..+..+++..+-..++..+..+
T Consensus 299 l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~l 378 (1204)
T 3a6p_A 299 ILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGAL 378 (1204)
T ss_dssp HHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHH
Confidence 22222 23345666666665555543211 1122357788888888888888888888777766
Q ss_pred hhhh--cH-H---HHHHhHHHHHHHhhc------CCC---------------------HHHHHHHHHhhHHHHhhhchhh
Q 006898 347 APLL--GK-D---ATIEQLLPIFLSLLK------DEF---------------------PDVRLNIISKLDQVNQVIGIDL 393 (626)
Q Consensus 347 ~~~~--~~-~---~~~~~l~~~l~~~l~------d~~---------------------~~vr~~a~~~L~~~~~~~~~~~ 393 (626)
.+.. +. + .+...+++.+...+. +.+ .+.|......+..++...+...
T Consensus 379 l~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~ 458 (1204)
T 3a6p_A 379 FRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTS 458 (1204)
T ss_dssp HSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 5442 11 1 234455555522111 100 1234444455555544433222
Q ss_pred HHhhHHHHHHHHhc-------------------------CCChHHHHHHHHHHHHHHHhh---C-hhhHHHHHHHHHHHH
Q 006898 394 LSQSLLPAIVELAE-------------------------DRHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGALCMQW 444 (626)
Q Consensus 394 ~~~~i~~~l~~~~~-------------------------~~~~~~r~~~~~~l~~l~~~~---~-~~~~~~~l~p~l~~~ 444 (626)
...+.+.+...+. ++.|....+....+..++..+ . .......+.|.++..
T Consensus 459 -l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ 537 (1204)
T 3a6p_A 459 -FQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQM 537 (1204)
T ss_dssp -HHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 2334444433322 224556666666666665544 1 011111233334443
Q ss_pred h---cCCchHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhhcC------------CChHHHHHHHHHHHHhccccCh
Q 006898 445 L---QDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINN------------PHYLYRMTILRAISLLAPVMGS 508 (626)
Q Consensus 445 l---~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~------------~~~~vR~~a~~~l~~i~~~~~~ 508 (626)
+ ...++.+|..++.+++.+...+... .+...++..+...+.+ .+..+|..|+.++..+++.++.
T Consensus 538 ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~ 617 (1204)
T 3a6p_A 538 VLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ 617 (1204)
T ss_dssp HHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2 3457889999999999888765421 1334444545444444 2347999999999999987765
Q ss_pred H--HhhhcHHHHHhhhCCCC---CchHHHHHHHHHHHHHhhhc
Q 006898 509 E--ITCSRLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVD 546 (626)
Q Consensus 509 ~--~~~~~~l~~l~~~l~d~---~~~vR~~a~~~l~~i~~~~~ 546 (626)
. .+.+.+...+...+... ...-+.....+++.+....+
T Consensus 618 ~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~ 660 (1204)
T 3a6p_A 618 LVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK 660 (1204)
T ss_dssp HHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCC
Confidence 4 23455555555544322 24455666667766654433
No 82
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.04 E-value=2e-08 Score=91.55 Aligned_cols=177 Identities=14% Similarity=0.165 Sum_probs=130.6
Q ss_pred hcCCChHHHHHHHHHhHHHHHHhhChHHH--HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH------HHHHhH
Q 006898 288 LLRDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD------ATIEQL 359 (626)
Q Consensus 288 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l 359 (626)
.+-+.++.-|.+++..|.........+.+ .+-+++++.-.+.|+|..|-..+++.+..+...++.. .....+
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 33334555555555555554432211110 1223444433344788888888888888876655432 224578
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHH-
Q 006898 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG- 438 (626)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~- 438 (626)
+|.+..-+.|....||..+-..+..+....++ ..+.+.+.+.++++||+.|..++..+..+.+..|... ...+
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~ 207 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLS 207 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--ccccc
Confidence 99999999999999999999999888877665 3567788888899999999999999999999998762 3356
Q ss_pred --HHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 439 --ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 439 --p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
|.+..++.|++.+||.+|..++..+....|+.
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 88999999999999999999999999998876
No 83
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.03 E-value=1.6e-07 Score=77.46 Aligned_cols=214 Identities=14% Similarity=0.126 Sum_probs=129.9
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc
Q 006898 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD 280 (626)
Q Consensus 201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 280 (626)
..++..+..++.|+-|.|++.|+..+..+++..++- +.+.+-..+.-+-.|..-..-...+.+||.++..-+. ....
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el-~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v~~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL-YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVKS 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH-HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HHHh
Confidence 445666666677777777777777777666554431 1111222222223444444555666777777765321 1245
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHH
Q 006898 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360 (626)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 360 (626)
++|.+..-..-.++.+|.+..++|+.++...+. ....+..-+..++++++..-|.++..+++.++... -.+...++
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--~~yv~PfL 183 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--FKYVNPFL 183 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--HHHHGGGH
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--ccccCcch
Confidence 677777666666788888888888888764322 22445555666778888888888888888776542 22445677
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 006898 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (626)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l 424 (626)
|-+..+|.|.+.-||..|+++|..+...-.. + ..++....+-++|.+.-+....-+.++.+
T Consensus 184 prL~aLL~D~deiVRaSaVEtL~~lA~~npk--l-Rkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 184 PRIINLLHDGDEIVRASAVEALVHLATLNDK--L-RKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH--H-HHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhhhHHHHHHHHHHHHcCHH--H-HHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 8888888888888888888888887654221 2 22333333334555555555555555544
No 84
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.02 E-value=1.8e-08 Score=95.19 Aligned_cols=187 Identities=11% Similarity=0.062 Sum_probs=139.0
Q ss_pred hHHHHHHHhhcCCC------------HHHHHHHHHhhHHHHhhhch--hhHHhhHHHHHHH-HhcCCChHHHHHHHHHHH
Q 006898 358 QLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIP 422 (626)
Q Consensus 358 ~l~~~l~~~l~d~~------------~~vr~~a~~~L~~~~~~~~~--~~~~~~i~~~l~~-~~~~~~~~~r~~~~~~l~ 422 (626)
..++..+..+.|+. .+-|..|+..|..+++.... .......+|.+.. ++++++..+|..++.+++
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555556666542 24566777777777764332 1222356788888 999999999999999999
Q ss_pred HHHHhhC---hhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHH
Q 006898 423 LLASQLG---VGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTI 495 (626)
Q Consensus 423 ~l~~~~~---~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a 495 (626)
.++.... ........+|.+..++. +++..+|..|+++|+.++....+ .+.....+|.|..++.+++..+|..+
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 9886422 12233456788888887 56889999999999999864332 22335689999999999999999999
Q ss_pred HHHHHHhccccCh---HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898 496 LRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 496 ~~~l~~i~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 544 (626)
+++++.++..-.. ......++|.|..++.++++.||..++.+|+.+...
T Consensus 188 ~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999865221 234567899999999999999999999999999876
No 85
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.02 E-value=1.3e-07 Score=77.99 Aligned_cols=214 Identities=17% Similarity=0.178 Sum_probs=151.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHh-hcCCchhHHHHHHHHHHHhhcccCchhhhh
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL-TQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (626)
.+++..+..+++|.-|.||+.++..+..++...+. ...-++.-+..+ -.++.-..-+....+++.++..-+. ...
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVK 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HHH
Confidence 56777788889999999999999999888876542 222233333333 3455445556667778877765443 356
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhh
Q 006898 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320 (626)
Q Consensus 241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 320 (626)
.++|.+..-..-.++..|.....+++.++...+. ....++.-+..++.+.+..-|..|+..++.+++. +. .+....
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~-~yv~Pf 182 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SF-KYVNPF 182 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-TH-HHHGGG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-Cc-cccCcc
Confidence 6778877766667899999999999999876431 1124555566788888888888888777766552 22 334667
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHH
Q 006898 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (626)
Q Consensus 321 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~ 386 (626)
+|.+..++.|.+.-||.++.+.+..++..-++ ...++...+.-++|....|.......|+.+.
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999865332 2334444556678888888888888887764
No 86
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.02 E-value=2.8e-08 Score=96.62 Aligned_cols=215 Identities=12% Similarity=0.027 Sum_probs=154.4
Q ss_pred hHHHHHHHHHhHHHHHHhhC-hH-HH--HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc---HHHH-HHhHHHHHH
Q 006898 293 EAEVRIAAAGKVTKFCRILN-PE-LA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDAT-IEQLLPIFL 364 (626)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~~~-~~-~~--~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~---~~~~-~~~l~~~l~ 364 (626)
+++++..|+.+|..++..-. .. .+ ....+|.|.+++.+++..++..++.+|..++..-+ +..+ ....+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46788999999988875322 11 22 13458999999999999999999999999875311 1222 224678888
Q ss_pred Hh-hcCCCHHHHHHHHHhhHHHHhhh-c-hhhH--HhhHHHHHHHHhcCCCh----HHHHHHHHHHHHHHHhh--Chhh-
Q 006898 365 SL-LKDEFPDVRLNIISKLDQVNQVI-G-IDLL--SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQL--GVGF- 432 (626)
Q Consensus 365 ~~-l~d~~~~vr~~a~~~L~~~~~~~-~-~~~~--~~~i~~~l~~~~~~~~~----~~r~~~~~~l~~l~~~~--~~~~- 432 (626)
.+ +...++.++..++.+|..+.... + ...+ ....+|.|.+++.+++. .++..+..++..++..+ +++.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 86 45677899999998888886522 1 1122 25688999999876543 58888888888887521 2211
Q ss_pred ---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcccc
Q 006898 433 ---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 506 (626)
Q Consensus 433 ---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~ 506 (626)
.....+|.+..++.+.+..+++.|+.+|..++..-.. .......+|.|.+++.+++..+|..++.++.++...-
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 1234688999999999999999999999999732111 1233567999999999999999999999999998754
Q ss_pred C
Q 006898 507 G 507 (626)
Q Consensus 507 ~ 507 (626)
+
T Consensus 337 ~ 337 (354)
T 3nmw_A 337 P 337 (354)
T ss_dssp C
T ss_pred H
Confidence 3
No 87
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.02 E-value=5e-09 Score=102.07 Aligned_cols=255 Identities=12% Similarity=0.080 Sum_probs=162.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhH
Q 006898 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243 (626)
Q Consensus 164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 243 (626)
+...+..-+-|++|++|..|+-+|..+.+..+...-.. ...+.+-.+|..++-+|.+++...+.+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDq------- 239 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDR------- 239 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence 44566666789999999999999999998765411100 112224467777777777766655442
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHH
Q 006898 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (626)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 323 (626)
....||+++++++|.+ .+++.+ ..++..++..+....|++|.+++-.+.-+.+.+.. .+.+++.
T Consensus 240 ---------VVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 240 ---------TVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp ---------CBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred ---------eeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 1245889999999888 666655 34444444455677789998888888777333332 4667888
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC--CCHHHHHHHHHhhHHHHhhhchhhHHhhHHHH
Q 006898 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (626)
Q Consensus 324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~ 401 (626)
+...++|.+.+||..++.++..++. + ...+.++..+-.+|.+ +-..--...+..|+.++..-........++|.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA~--p--~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR 379 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFPI--T--DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD 379 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSCC--S--STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhcc--h--hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence 8888888889999998888888771 1 1123333444333332 22222234445555555432211111367788
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHH-HHHHhcCCchHHHHHHHHHHH
Q 006898 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL-CMQWLQDKVYSIRDAAANNLK 461 (626)
Q Consensus 402 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~-l~~~l~d~~~~VR~~a~~~l~ 461 (626)
+..++.++-..||.++++++..+. ...++.. +...+-.++.+|+..+.+++.
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 888888888899999888886654 1223333 445677788889998888885
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.01 E-value=6.7e-09 Score=99.58 Aligned_cols=291 Identities=14% Similarity=0.045 Sum_probs=162.3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhccc
Q 006898 154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (626)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (626)
..+++.....+..-+.+++..++...|+.+.-.+..++.. ++... -..+.+.+-++|+++.+|..|+.++..+..
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-- 133 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD-- 133 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence 3455555667777788899999999999999999888776 33333 677888889999999999999999988753
Q ss_pred CchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh
Q 006898 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (626)
Q Consensus 234 ~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (626)
....+.+.+.+++.+.|+++.||..|+-+...+....++ ..+.+++.+.+++.|.++.|..+|+..+..+.+. +.
T Consensus 134 --~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~ 208 (355)
T 3tjz_B 134 --STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DR 208 (355)
T ss_dssp --TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CH
T ss_pred --HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-ch
Confidence 345677888999999999999999999888776543221 1245777888889999999998888888887653 22
Q ss_pred HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhh
Q 006898 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (626)
Q Consensus 314 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~ 393 (626)
. ....+++.+.+. .-.++.....+++.+..++..- .+.....+.+.+..+++..++.|..+|++++-.+.. .+...
T Consensus 209 ~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~ 284 (355)
T 3tjz_B 209 L-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKE 284 (355)
T ss_dssp H-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred H-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHH
Confidence 1 223344443321 1123443344444444433211 012345788888999999999999999988877644 12111
Q ss_pred HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006898 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (626)
Q Consensus 394 ~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~ 461 (626)
. ......+..++.+++..+|..++..+..++...+... ...-..+..++.|++..++..|..+|-
T Consensus 285 ~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v--~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 285 L-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV--TACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp ----CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------------
T ss_pred H-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH--HHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 1 2233444555666677778888777777765433211 123334566677777777766665543
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.00 E-value=6.9e-08 Score=88.00 Aligned_cols=137 Identities=13% Similarity=0.131 Sum_probs=113.1
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChh------hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHH
Q 006898 407 EDRHWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480 (626)
Q Consensus 407 ~~~~~~~r~~~~~~l~~l~~~~~~~------~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l 480 (626)
.|.|..+-..+++.+..+...++.. .-...++|.+..-++|+...||..+-..+..+...+++ ..+++.+
T Consensus 97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l 172 (266)
T 2of3_A 97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPML 172 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHH
Confidence 4667777777777777766554321 11356899999999999999999999999999887765 4578888
Q ss_pred HhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHH---HHHhhhCCCCCchHHHHHHHHHHHHHhhhccch
Q 006898 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL---PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 549 (626)
Q Consensus 481 ~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l---~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~ 549 (626)
.+.+.+.||++|..++..++.+.+..|... ...+ |.+..++.|++.+||.+|..++..+....|+..
T Consensus 173 ~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 173 LDALKSKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 888899999999999999999999888662 4567 999999999999999999999999999988753
No 90
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.99 E-value=6.4e-07 Score=102.21 Aligned_cols=399 Identities=13% Similarity=0.071 Sum_probs=218.1
Q ss_pred CChHHHHHHHHHHHHhcC-------CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHH
Q 006898 156 APDILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA 228 (626)
Q Consensus 156 ~~~~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~ 228 (626)
++++.+..+...++..+. +..+.||...+.++..++....+ ..|+.+++.+.++++. ++..+..++..|..
T Consensus 82 l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~ 159 (1204)
T 3a6p_A 82 MSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLR 159 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 344444444444444322 24588999999999999887655 4467888888888765 45567778888888
Q ss_pred hhcccCc-----hh-----------hhhhhHHHHHHhcCC-------------------CCHHHHHHHHHHHHHHHHHhC
Q 006898 229 LGKLLEP-----QD-----------CVAHILPVIVNFSQD-------------------KSWRVRYMVANQLYELCEAVG 273 (626)
Q Consensus 229 l~~~~~~-----~~-----------~~~~i~~~l~~~~~d-------------------~~~~vR~~a~~~l~~l~~~~~ 273 (626)
+.+.... .. ..+.+++.+...+.+ .+..++..+.+++.......+
T Consensus 160 L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~ 239 (1204)
T 3a6p_A 160 LAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS 239 (1204)
T ss_dssp HHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred HHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC
Confidence 7654211 00 012333433333322 122345555555543322111
Q ss_pred CCcc---ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-hHH---HHHhh----HHHHHHhc--------cCCCHH
Q 006898 274 PEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PEL---AIQHI----LPCVKELS--------SDSSQH 334 (626)
Q Consensus 274 ~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~---~~~~l----~~~l~~l~--------~d~~~~ 334 (626)
.... ...+++.+..++.+ +++|..|+++|..+...-. ++. +...+ +..+.+.. .+.+..
T Consensus 240 ~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e 317 (1204)
T 3a6p_A 240 MSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYV 317 (1204)
T ss_dssp HHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHH
T ss_pred HHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHH
Confidence 1111 12478888877775 5799999999999987432 221 11111 11122221 223456
Q ss_pred HHHHHHHHHHhhhhhhcH----------HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc--hhhHHhhHHHHH
Q 006898 335 VRSALASVIMGMAPLLGK----------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAI 402 (626)
Q Consensus 335 vr~~~~~~l~~l~~~~~~----------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~--~~~~~~~i~~~l 402 (626)
+++.+++.+..++..+-. ......+++.++.++.+++..|-..++.....+.+... .+.....+++.+
T Consensus 318 ~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~L 397 (1204)
T 3a6p_A 318 FLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKY 397 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 677777776666532211 11244688899999999888888888877776655432 111112233333
Q ss_pred HHHh----------cCCC---------------------hHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC----
Q 006898 403 VELA----------EDRH---------------------WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD---- 447 (626)
Q Consensus 403 ~~~~----------~~~~---------------------~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d---- 447 (626)
.+.+ .+.+ |..|......+..++... +....+.+.+.+...+.+
T Consensus 398 l~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~-p~~~l~~v~~~l~~~l~~~l~~ 476 (1204)
T 3a6p_A 398 LRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLD-PKTSFQMAGEWLKYQLSTFLDA 476 (1204)
T ss_dssp HHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhhhhcc
Confidence 2222 1000 345666666666655443 222333444444333332
Q ss_pred ---------------------CchHHHHHHHHHHHHHHHHh---C-hHHHhhhhHHHHHhhh---cCCChHHHHHHHHHH
Q 006898 448 ---------------------KVYSIRDAAANNLKRLAEEF---G-PEWAMQHITPQVLEMI---NNPHYLYRMTILRAI 499 (626)
Q Consensus 448 ---------------------~~~~VR~~a~~~l~~l~~~~---~-~~~~~~~il~~l~~~l---~~~~~~vR~~a~~~l 499 (626)
+.+...++....+..+...+ . .+.....+.|.+.+.+ +..++.+|...+.++
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l 556 (1204)
T 3a6p_A 477 GSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNV 556 (1204)
T ss_dssp --------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHH
T ss_pred cccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 11122334344444444333 1 1111113456666642 345888999999999
Q ss_pred HHhccccCh-HHhhhcHHHHHhhhCCC------------CCchHHHHHHHHHHHHHhhhccc--hhhhcccchHH
Q 006898 500 SLLAPVMGS-EITCSRLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSF 559 (626)
Q Consensus 500 ~~i~~~~~~-~~~~~~~l~~l~~~l~d------------~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~ 559 (626)
+.+...+.. ..+...++..++..+.+ .+.+||..|+.++..+...++.. ++.+.+...+.
T Consensus 557 ~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~ 631 (1204)
T 3a6p_A 557 SALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVK 631 (1204)
T ss_dssp HHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 988876542 23556666666655544 23479999999999999887653 34445555554
No 91
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.97 E-value=2e-08 Score=97.95 Aligned_cols=253 Identities=13% Similarity=-0.003 Sum_probs=166.2
Q ss_pred HHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHH
Q 006898 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91 (626)
Q Consensus 12 ~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l 91 (626)
..|...|-++.++.|-.|.-+|.++.+..|..-.+. ...+.+--+|.-+.-+|.+|..++++..
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~~~N~DLAvRLLCVLALDRFGDYVSDqV--------- 240 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------IRVDSKLFSKIYEILVTDKFNDFVDDRT--------- 240 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------CCCCTTHHHHHHHHHHHBCCBBCSSSSC---------
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------ccccHHHHHHHHHHHHhccccccccCee---------
Confidence 467777889999999999999999988777532221 1122266677777778888877766421
Q ss_pred hhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHh
Q 006898 92 ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQL 171 (626)
Q Consensus 92 ~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l 171 (626)
..-||+.|+++|+.+ .+++++ . .++..+......+.|.+|.++.-.+..+.+.... .+.+.+.+...
T Consensus 241 -------VAPVRETaAQtLGaL-~hLp~e--~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~G 307 (800)
T 3oc3_A 241 -------VAPVRDAAAYLLSRI-YPLIGP--N-DIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSL 307 (800)
T ss_dssp -------BCHHHHHHHHHHHHH-TTTSCS--C-CHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHH
T ss_pred -------eeehHHHHHHHHHHH-HhCChh--H-HHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhh
Confidence 233899999999999 888876 1 2222222344666788888777666665333322 67788888888
Q ss_pred cCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCch--hHHHHHHHHHHHhhcccCchhhhhhhHHHHHHh
Q 006898 172 CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF 249 (626)
Q Consensus 172 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 249 (626)
++|.+.+||..|+.+|..++ .+...+.++..+...+.+.++ ..-...+..|+.++.+-......+.++|-+..+
T Consensus 308 L~D~DDDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PF 383 (800)
T 3oc3_A 308 LSSPDEDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPC 383 (800)
T ss_dssp TTCSSHHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGG
T ss_pred cCCcccHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhh
Confidence 88888899999998888877 223345566666666554432 223345566666665543322234677777888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHH-HHHhcCCChHHHHHHHHHhHH
Q 006898 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA-YVRLLRDNEAEVRIAAAGKVT 305 (626)
Q Consensus 250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~-l~~~l~d~~~~vr~~a~~~l~ 305 (626)
+.++-..||.++++++..+. ...++.. +.+++-+++++++..+.+.+.
T Consensus 384 LRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 384 FTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 88888889998888876554 1223333 345556777788888777764
No 92
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.95 E-value=7.3e-06 Score=90.75 Aligned_cols=469 Identities=12% Similarity=0.065 Sum_probs=261.1
Q ss_pred cchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcC----CCChHHH
Q 006898 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP----SAPDILK 161 (626)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~----~~~~~~~ 161 (626)
.+-.++..+.+ +++..|+.|-+.|..+-+.-. .+.....++ ..+.+..+|..|+..+..... .++++.+
T Consensus 29 ~Le~lv~~ly~-p~~~~r~qA~~~L~q~q~sp~---aw~~~~~iL---~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~ 101 (1073)
T 3gjx_A 29 LLDNVVNCLYH-GEGAQQRMAQEVLTHLKEHPD---AWTRVDTIL---EFSQNMNTKYYGLQILENVIKTRWKILPRNQC 101 (1073)
T ss_dssp HHHHHHHTTTC-SSHHHHHHHHHHHHTSSCCSC---HHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCch---HHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHH
Confidence 33334444443 455678888887766543211 122222222 133467889988888877544 4566555
Q ss_pred HHHHHHHH----HhcCC-----CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcc
Q 006898 162 TELRSIYT----QLCQD-----DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (626)
Q Consensus 162 ~~l~~~l~----~l~~d-----~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (626)
..+...++ ....+ .++.++...+.++..++...-++. |+.+++.+....+.+ +..+...+..|..+.+.
T Consensus 102 ~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~~-~~~~~~~L~IL~~L~EE 179 (1073)
T 3gjx_A 102 EGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRTS-ESLCQNNMVILKLLSEE 179 (1073)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHH
Confidence 54444444 43333 357788999999999998765533 677777777776543 44556677777666654
Q ss_pred cCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhh
Q 006898 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRIL 311 (626)
Q Consensus 233 ~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~ 311 (626)
+..-. .. +...+....++...... ...+++.+...++ ..++++...++++++.+...+
T Consensus 180 V~d~~-~~-------~l~~~r~~~lk~~L~~~-------------~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI 238 (1073)
T 3gjx_A 180 VFDFS-SG-------QITQVKAKHLKDSMCNE-------------FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI 238 (1073)
T ss_dssp HTTSH-HH-------HBCHHHHHHHHHHHHHT-------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS
T ss_pred HHhcc-cc-------cccHHHHHHHHHHHHHH-------------HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc
Confidence 32210 00 00000011111111111 1334444444442 345788888899999998888
Q ss_pred ChHHH-HHhhHHHH-HHhccCCCHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHH----HHhh-------------cCC
Q 006898 312 NPELA-IQHILPCV-KELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIF----LSLL-------------KDE 370 (626)
Q Consensus 312 ~~~~~-~~~l~~~l-~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l----~~~l-------------~d~ 370 (626)
+...+ ...+++.+ ..++ .++.+|.++++++..+...-..+ .....+...+ ...+ .+.
T Consensus 239 ~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~ 316 (1073)
T 3gjx_A 239 PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDD 316 (1073)
T ss_dssp CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTT
T ss_pred CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchh
Confidence 76643 34566766 4555 35688999999999887541111 1111122111 1122 122
Q ss_pred CHHHHHHHHHhhHHHHhhhc------hh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh-----------
Q 006898 371 FPDVRLNIISKLDQVNQVIG------ID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----------- 431 (626)
Q Consensus 371 ~~~vr~~a~~~L~~~~~~~~------~~--~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----------- 431 (626)
+.+.-.+.+..+..+++... ++ ......+..+..+...++..+-...++.+..+...+-.+
T Consensus 317 d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~ 396 (1073)
T 3gjx_A 317 EQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLL 396 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 22333333333333332211 11 011123334455666778888888888887776643110
Q ss_pred ---------h----H---HHHHHHHHHHHhcCCc----------------------hHHHHHHHHHHHHHHHHhChHHHh
Q 006898 432 ---------F----F---DDKLGALCMQWLQDKV----------------------YSIRDAAANNLKRLAEEFGPEWAM 473 (626)
Q Consensus 432 ---------~----~---~~~l~p~l~~~l~d~~----------------------~~VR~~a~~~l~~l~~~~~~~~~~ 473 (626)
. + ...+...+...+.-+. .+++..--.++..+. .++.....
T Consensus 397 ~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~ 475 (1073)
T 3gjx_A 397 SGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTE 475 (1073)
T ss_dssp TSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHH
Confidence 0 1 1222333333332110 012333334444443 34444445
Q ss_pred hhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChH---HhhhcHHHHHhhhCCCC-----CchHHHHHHHHHHHHHh
Q 006898 474 QHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDR-----VPNIKFNVAKVLQSLIP 543 (626)
Q Consensus 474 ~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~---~~~~~~l~~l~~~l~d~-----~~~vR~~a~~~l~~i~~ 543 (626)
..+++.+.+.++. .+|..+.+++.++|.++..+..+ .+...+++.|..+...+ .+.++.+++.++|+..+
T Consensus 476 ~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~ 555 (1073)
T 3gjx_A 476 IIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPR 555 (1073)
T ss_dssp HHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHH
Confidence 5566777655443 57999999999999998877642 56788888888877544 45688888899999877
Q ss_pred hhccc-hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhcC
Q 006898 544 IVDQS-VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQ 597 (626)
Q Consensus 544 ~~~~~-~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~~ 597 (626)
.+... .+...++.-+. ....|+++.|.. +|+.|+.++.+-.+.+
T Consensus 556 wl~~h~~~L~~vl~~L~-~~m~~~~~~vq~---------aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 556 FLRAHWKFLKTVVNKLF-EFMHETHDGVQD---------MACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHCHHHHHHHHHHHH-HHTTCCSTTHHH---------HHHHHHHHHHHHTGGG
T ss_pred HHHhCHHHHHHHHHHHH-HHHhcCCHHHHH---------HHHHHHHHHHHHHHHH
Confidence 76542 34444555555 567799999999 9999999987655544
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.92 E-value=6.2e-08 Score=83.79 Aligned_cols=183 Identities=12% Similarity=0.120 Sum_probs=151.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh-hH
Q 006898 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-FF 433 (626)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~ 433 (626)
..+..+..++.|.|+.++..++.++.++.+..+.. ...+.++|.+.++..+++.++-..|++++..+....+.. ..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 35677888999999999999999999998874221 223678999999999999999999999999998876432 22
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhh
Q 006898 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 513 (626)
Q Consensus 434 ~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~ 513 (626)
...+...+...+.++++-++..++..++.+ +... ....+...+..++.++|.+++.+++.++.+++...+.....+
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~ 188 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT 188 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence 356788888899999999999999999998 2222 246688888888899999999999999999998777655667
Q ss_pred cHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898 514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 514 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~ 544 (626)
.++..+..+++.+++.++..|..++..+...
T Consensus 189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 189 LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 7777788888899999999999999999876
No 94
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.90 E-value=4e-08 Score=92.82 Aligned_cols=171 Identities=15% Similarity=0.108 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhc
Q 006898 412 RVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMIN 485 (626)
Q Consensus 412 ~~r~~~~~~l~~l~~~~~~--~~~~~~l~p~l~~-~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~ 485 (626)
..|..++..+..+++.... .+.....+|.++. ++.++++.||..|+++|+.++..... .......+|.|.+++.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 4567777777777664321 1222345788888 99999999999999999999864211 1234568899999887
Q ss_pred -CCChHHHHHHHHHHHHhccccCh---HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---chhhhcccchH
Q 006898 486 -NPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVSTFSVSPFS 558 (626)
Q Consensus 486 -~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~~~~~~i~~~l 558 (626)
+++..+|..+++++++++....+ .+.....+|.|..++++++..+|..|+++|..+...... ......++|.|
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 46889999999999999875433 223456899999999999999999999999999865222 13345788888
Q ss_pred HhhhccCCCcccccccccCchhHHHHHHHHHHHH
Q 006898 559 FMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHR 592 (626)
Q Consensus 559 ~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~ 592 (626)
. .++.+++.+++. .|..||..+..
T Consensus 215 v-~LL~~~d~~v~~---------~al~aL~~l~~ 238 (296)
T 1xqr_A 215 V-ALVRTEHSPFHE---------HVLGALCSLVT 238 (296)
T ss_dssp H-HHHTSCCSTHHH---------HHHHHHHHHHT
T ss_pred H-HHHcCCChhHHH---------HHHHHHHHHHh
Confidence 8 889999999999 88888887753
No 95
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.87 E-value=3.2e-07 Score=79.39 Aligned_cols=184 Identities=12% Similarity=0.094 Sum_probs=146.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-hh
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD 237 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~ 237 (626)
++.+..+..++.|.++.++..+..+++.+.+..++ ......++|.+..++.++++.|-..|++++..+.+..+. +.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34667788888999999999999999999887654 234567888899999999999999999999999988876 44
Q ss_pred hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHH
Q 006898 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI 317 (626)
Q Consensus 238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 317 (626)
....+...+.....+++.-.+..++..+|.+ ........+...+..+++..+++++.+++.++-.++..-+.....
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 5667788888888889999999999988877 112223567888888888888999999999988888766655555
Q ss_pred HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh
Q 006898 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (626)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (626)
+.++.-+..++++.++.++.-+...+..+.+.
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 67777778888888999998888887777654
No 96
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.87 E-value=5.4e-08 Score=85.32 Aligned_cols=140 Identities=20% Similarity=0.229 Sum_probs=114.5
Q ss_pred hhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Q 006898 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (626)
Q Consensus 200 ~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 278 (626)
.+++++.+..+.+++..+||..|+..++.. . ....+++.+.. +..|++|.||..++.+++.++...+.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p---- 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY---- 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----
Confidence 467889999999999999999999988876 2 13568899987 88999999999999999999975442
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh
Q 006898 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350 (626)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~ 350 (626)
+..++.+....+|+++.||..|...+..++.........+.++|.+..+..|++..||.+++.+|..+++.-
T Consensus 138 e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 138 KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 347788999999999999999998875544432222233567899999999999999999999999998753
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.6e-08 Score=94.33 Aligned_cols=182 Identities=14% Similarity=0.086 Sum_probs=138.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhhChhhHH-------HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH----
Q 006898 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---- 470 (626)
Q Consensus 402 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-------~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---- 470 (626)
+.+-+.+++|..|..+++.+..+.......... ..+.+.+...+.|.+..|...++.++..++..++..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 456678999999999999998877654322211 123556777889999999999999999998766532
Q ss_pred ----HHhhhhHHHHHh-hhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh
Q 006898 471 ----WAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (626)
Q Consensus 471 ----~~~~~il~~l~~-~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~ 545 (626)
.....++|.+.+ .+.+....+|..+..++..+++..... ..+++.+...+++++|.+|..++..|..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 123567787775 589999999999999998887655432 345677788889999999999999999999988
Q ss_pred ccch-----hhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898 546 DQSV-----STFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRK 596 (626)
Q Consensus 546 ~~~~-----~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~ 596 (626)
|... ..+.+++.+. +++.|+|.+||. .|...+..+..++|.
T Consensus 171 g~~~~~~k~~l~~i~~~l~-k~l~d~~~~VR~---------aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVP-QLAGHGDRNVRS---------QTMNLIVEIYKVTGN 216 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHH-HHHTCSSHHHHH---------HHHHHHHHHHTC---
T ss_pred CCCcCCchhHHHHHHHHHH-HHHhCCcHHHHH---------HHHHHHHHHHHHhCc
Confidence 7642 2345777888 899999999999 999998888777664
No 98
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.85 E-value=6.8e-08 Score=92.62 Aligned_cols=243 Identities=13% Similarity=0.031 Sum_probs=89.1
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHH
Q 006898 284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363 (626)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 363 (626)
.+.+=++++++-+|..|+.+++.+.. +.+.+.+.+.+.+.+.|+++.||++|+-+...+....+ + ....+++.+
T Consensus 108 sl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e-~v~~~~~~l 181 (355)
T 3tjz_B 108 SLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-D-VVKRWVNEA 181 (355)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-H-HHHTTHHHH
T ss_pred HHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-H-HHHHHHHHH
Confidence 33333444445555555554444422 11234445555555555555555555544444433211 1 223455555
Q ss_pred HHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 006898 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443 (626)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~ 443 (626)
..++.|.++.|...|+..+..+.+.- ... ...+++.+.+. .-.++......++.+..+...- .......+.+.+..
T Consensus 182 ~~ll~d~n~~V~~~Al~lL~ei~~~d-~~a-~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~ 257 (355)
T 3tjz_B 182 QEAASSDNIMVQYHALGLLYHVRKND-RLA-VSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIES 257 (355)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTTC-HHH-HHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------C
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhhc-hHH-HHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHH
Confidence 55566666666655555555554321 000 11222222110 0112222222333332222110 01223557777888
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhC
Q 006898 444 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 523 (626)
Q Consensus 444 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l 523 (626)
+++..+..|...|++++-.+... +.. ......+.+..++..+++.+|..++..+..++...+. .....-..+..++
T Consensus 258 ~L~~~~~aVvyEa~k~I~~l~~~-~~~-~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li 333 (355)
T 3tjz_B 258 CLRNKHEMVVYEAASAIVNLPGC-SAK-ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLV 333 (355)
T ss_dssp CCCCSSHHHHHHHHHHHTC-------------CCCTHHHHHHSSSSSSHHHHHHCC------------------------
T ss_pred HHcCCChHHHHHHHHHHHhccCC-CHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHc
Confidence 88888889999888888776542 211 1223344455567777888888888888887764332 2334555677788
Q ss_pred CCCCchHHHHHHHHHHH
Q 006898 524 KDRVPNIKFNVAKVLQS 540 (626)
Q Consensus 524 ~d~~~~vR~~a~~~l~~ 540 (626)
+|++.+++.-|..+|-+
T Consensus 334 ~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 334 TDANRSIATLAITTLLK 350 (355)
T ss_dssp -----------------
T ss_pred cCCcHhHHHHHHHHhhh
Confidence 88888888887777654
No 99
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.8e-07 Score=88.51 Aligned_cols=182 Identities=11% Similarity=0.059 Sum_probs=124.5
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHHhhChHH-------HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH-----
Q 006898 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPEL-------AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----- 353 (626)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~----- 353 (626)
.+.+.+.+|..|..+++.+..+........ ....+.+.+...+.|.|..|...+++++..++..++..
T Consensus 15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~ 94 (278)
T 4ffb_C 15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNA 94 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 344555556666666655555444322110 01234556667778888888888888887777654421
Q ss_pred ---HHHHhHHHHHH-HhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC
Q 006898 354 ---ATIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (626)
Q Consensus 354 ---~~~~~l~~~l~-~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 429 (626)
.....++|.++ +++.|..+.+|..+..++..++...+.. ..+++.+...++++++++|..++.++..+...+|
T Consensus 95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg 171 (278)
T 4ffb_C 95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFG 171 (278)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhC
Confidence 12345666655 4688999999999999888877654332 3456777778899999999999999999998887
Q ss_pred hhh-----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 430 VGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 430 ~~~-----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
... ..+.+++.+..++.|++++||.+|..+++.+...+|+.
T Consensus 172 ~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 172 LTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 543 23456777888899999999999999999999888864
No 100
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.80 E-value=1.7e-07 Score=82.20 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=113.8
Q ss_pred HhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHH-hcCCCCHHHHHHHHHhHHHHHHhhCccchhhh
Q 006898 124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKTD 202 (626)
Q Consensus 124 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 202 (626)
+.++++...+.+++.+.+|..|+.+++.. . ...++++.+.. +..|++|.||..++.+++.++...+++ .
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----~ 139 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----K 139 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----T
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----H
Confidence 45778899999999999999999999888 3 12668888887 888999999999999999999755553 3
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006898 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (626)
Q Consensus 203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~ 271 (626)
.++.+...+.|++..||..|++.+.-.+...........++|++..+..|++..||.+++..|..+++.
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 668888999999999999999887554443222344567899999999999999999999999998864
No 101
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.71 E-value=1.5e-09 Score=89.83 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=11.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHH
Q 006898 282 VPAYVRLLRDNEAEVRIAAAGKVTKF 307 (626)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l 307 (626)
++.+...++|+++.||..++.+|+.+
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34444444444444444444444443
No 102
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.66 E-value=1.4e-06 Score=95.59 Aligned_cols=388 Identities=10% Similarity=0.028 Sum_probs=216.9
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc------cchhhhHHHHHHHhhc-CCchhHHHHHHHHH
Q 006898 154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGC 226 (626)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l 226 (626)
.+.++...+.+.+.+..+..|.+..-.+.+++.++.+...... +..++.+.|.+...+. +-.++....-..++
T Consensus 499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i 578 (997)
T 1vsy_5 499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA 578 (997)
T ss_dssp TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 5556667788889999999998888889999999888765432 3466778999999888 45666655555555
Q ss_pred HHhhcccCchhhhhhhHHHHHHhcC---C---CCHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHH
Q 006898 227 AALGKLLEPQDCVAHILPVIVNFSQ---D---KSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIA 299 (626)
Q Consensus 227 ~~l~~~~~~~~~~~~i~~~l~~~~~---d---~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~ 299 (626)
..+.....+.. ..-++..+.. +. + .+......-...+..+....+-.. ....++..+. +..+...||+.
T Consensus 579 ~~~~~~~DprR-~~~L~e~l~~-~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~ 654 (997)
T 1vsy_5 579 WWLPAVVDLRR-SKTFFCHFIN-ADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQA 654 (997)
T ss_dssp HHHHHHSCGGG-CHHHHHHHTC-CCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHH
T ss_pred HHHhcCCChhh-hHHHHHHHHH-hhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHH
Confidence 54444443322 1222222211 11 1 111111111122222222222111 0123333333 45556778887
Q ss_pred HHHhHHHHHHhhC----------------------------hHHHHH---hhHHHHHHhcc---C--C-----CHHH--H
Q 006898 300 AAGKVTKFCRILN----------------------------PELAIQ---HILPCVKELSS---D--S-----SQHV--R 336 (626)
Q Consensus 300 a~~~l~~l~~~~~----------------------------~~~~~~---~l~~~l~~l~~---d--~-----~~~v--r 336 (626)
....|..+....- ++.+.+ .++..+..... + + +... -
T Consensus 655 Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~ 734 (997)
T 1vsy_5 655 VAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRT 734 (997)
T ss_dssp HHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHH
Confidence 7777766554321 011111 11111221111 1 1 1111 2
Q ss_pred HHHHHHHHhhhhhhcHH---HHHHh-HHHHHHHhhcCCCH-HHHHH-HHHhhHHHHhhhchhhHHhhHHHHHHHHhc-CC
Q 006898 337 SALASVIMGMAPLLGKD---ATIEQ-LLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR 409 (626)
Q Consensus 337 ~~~~~~l~~l~~~~~~~---~~~~~-l~~~l~~~l~d~~~-~vr~~-a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~-~~ 409 (626)
..++.++.......... .+... ++|.++.+.++++. ++... +..++..+....-.....+.++..+.+..+ ++
T Consensus 735 kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~ 814 (997)
T 1vsy_5 735 STIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALS 814 (997)
T ss_dssp HHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSC
T ss_pred HHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 23333333322211111 11122 55555555555443 44444 444455543332222222445555555555 67
Q ss_pred ChHHHHHHHHHHHHHHHh----hChhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhh
Q 006898 410 HWRVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 484 (626)
Q Consensus 410 ~~~~r~~~~~~l~~l~~~----~~~~~~~~~l~p~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l 484 (626)
+| .|..++..+..+.-. ++.+. ...+...+..+|.|+. .+||+.|+.+|+-+....+.......++..+.+.+
T Consensus 815 sW-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~ 892 (997)
T 1vsy_5 815 SN-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGL 892 (997)
T ss_dssp SS-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSS
T ss_pred cH-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99 999999998776542 13322 2567888999999999 99999999999999876523112234444454443
Q ss_pred cC------------CChHHHHHHHHHHHHhccccCh----HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc
Q 006898 485 NN------------PHYLYRMTILRAISLLAPVMGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (626)
Q Consensus 485 ~~------------~~~~vR~~a~~~l~~i~~~~~~----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~ 548 (626)
.. .+...|.+++-+++.++...+- ..+.+.++..|.....|+.+ |+..+-++++++.....+.
T Consensus 893 ~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~ 971 (997)
T 1vsy_5 893 DVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADT 971 (997)
T ss_dssp TTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTT
T ss_pred hhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchh
Confidence 22 1225789999999999886653 34778888888888899665 9999999999998876554
No 103
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.65 E-value=2.2e-08 Score=82.62 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHH
Q 006898 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI 206 (626)
Q Consensus 127 ~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~ 206 (626)
.+.+..+++++++.+|..++..++.+... . .+.+..+++|+++.||..++.+|+.+.. ...++.
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~ 77 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDE----A----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEP 77 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSST----T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCch----H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHH
Confidence 34445555556666666666555544321 0 2445555566666666666666655421 233455
Q ss_pred HHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHH
Q 006898 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLY 266 (626)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~ 266 (626)
+...++|+++.||..++.+|+.+. .+..++.+...++|+++.||..++.+|+
T Consensus 78 L~~~L~d~~~~VR~~A~~aL~~~~--------~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 78 LIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHHC--------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 555556666666666666666554 1234455555555666666666655554
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.33 E-value=1.3e-05 Score=88.10 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=114.5
Q ss_pred hHHHHHHhcCCChH-HHHHH-HHHhHHHHHHhhChHHHHHhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhh----hhcHH
Q 006898 281 LVPAYVRLLRDNEA-EVRIA-AAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAP----LLGKD 353 (626)
Q Consensus 281 l~~~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~----~~~~~ 353 (626)
++|.++.+.++++. ++... |...+..++...-.....+.++..+.+... +++| .|.+++..+..+.- .++.+
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~ 839 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE 839 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence 56666666666654 55555 445555554433333334556666666565 6899 99999887665432 11222
Q ss_pred HHHHhHHHHHHHhhcCCC-HHHHHHHHHhhHHHHhhhch-hhHHhhHHHHHHHHhcC------------CChHHHHHHHH
Q 006898 354 ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVELAED------------RHWRVRLAIIE 419 (626)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~L~~~~~~~~~-~~~~~~i~~~l~~~~~~------------~~~~~r~~~~~ 419 (626)
. ...+...+..+|.|+. .+||+.|+.+|+.+....+. ... +.++..+.+.... .+-..|.+++-
T Consensus 840 ~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~-~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVL 917 (997)
T 1vsy_5 840 E-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPL-LSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVL 917 (997)
T ss_dssp H-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHH-HHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhH-HHHHHHHHHHHhhcccccccccccchHHHHHHHHHH
Confidence 2 2467888999999999 99999999999999877523 222 2333333333211 11146677777
Q ss_pred HHHHHHHhhCh----hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH
Q 006898 420 YIPLLASQLGV----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (626)
Q Consensus 420 ~l~~l~~~~~~----~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~ 471 (626)
.++++..+++- ..+.+.++..+-....|+.+ |+..+-++++.+-+...+.|
T Consensus 918 gL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~W 972 (997)
T 1vsy_5 918 GLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADTW 972 (997)
T ss_dssp HHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchhH
Confidence 77777776542 23444455555555666443 77777777777777665554
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.15 E-value=0.0088 Score=61.21 Aligned_cols=222 Identities=12% Similarity=0.093 Sum_probs=132.4
Q ss_pred HHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHH------HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cc
Q 006898 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELR------SIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AH 198 (626)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~------~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~ 198 (626)
-++.+..+++.+++.+|..+.+++..++.+-+...++-++ +.+..+++|+...+|..++..|..++..... +.
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQk 202 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQK 202 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5677788888889999999999999998877665555444 6788899999999999999999999875332 11
Q ss_pred h--hhhHHHHHHHhhcCCch----hHHHHHHHHHHHhhcccCc-hh-h-hhhhHHHHHHhcCC----CCHHHH--HH---
Q 006898 199 L--KTDIMSIFEDLTQDDQD----SVRLLAVEGCAALGKLLEP-QD-C-VAHILPVIVNFSQD----KSWRVR--YM--- 260 (626)
Q Consensus 199 ~--~~~ll~~l~~l~~d~~~----~vr~~a~~~l~~l~~~~~~-~~-~-~~~i~~~l~~~~~d----~~~~vR--~~--- 260 (626)
. .+..++.+..++..+.. .|..-++..+..+.+.-.. +. + ....+|.+..++.. ..|.-+ ..
T Consensus 203 lVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~ 282 (651)
T 3grl_A 203 IVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHL 282 (651)
T ss_dssp HHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHH
Confidence 0 11245556666655433 6777888888888876432 11 1 12233333333321 223211 11
Q ss_pred HHHHHHHHHHHhCC---------CccccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhChH--HHH----------
Q 006898 261 VANQLYELCEAVGP---------EPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE--LAI---------- 317 (626)
Q Consensus 261 a~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~---------- 317 (626)
+..++..+...-+. ......+++.+++++... ...++..|+.+++.+....... .+.
T Consensus 283 ~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~ 362 (651)
T 3grl_A 283 MLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPR 362 (651)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCE
T ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCc
Confidence 12222222111111 011234666777765543 4689999999998876532111 111
Q ss_pred HhhHHHHHHhccC-CCHHHHHHHHHHHHhhh
Q 006898 318 QHILPCVKELSSD-SSQHVRSALASVIMGMA 347 (626)
Q Consensus 318 ~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~ 347 (626)
..++..+..+..+ ....+|.+++.++..+.
T Consensus 363 p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 363 PAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp EHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 1233334444544 44789999988887765
No 106
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.00 E-value=0.015 Score=62.17 Aligned_cols=185 Identities=11% Similarity=0.012 Sum_probs=103.3
Q ss_pred hhhhccccccccCCchHHHHHHHHHHhccccccCCcc---hhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhH
Q 006898 46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL 122 (626)
Q Consensus 46 ~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~ 122 (626)
.+.+.|++..+.+++++.|..++.++.+++.-..... ....+.+++..+++|++.+||.+|+.+|..++..-+++..
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3577888887888889999999999998875211000 1233445678888999999999999999998877655322
Q ss_pred ----HHhHHHHHHHHhcCC-------------ccc-hh-------HHHhhHhHHhcCCCChH----HHHHHHHHHHHhc-
Q 006898 123 ----VDWYIPLVKRLAAGE-------------WFT-AR-------VSACGLFHIAYPSAPDI----LKTELRSIYTQLC- 172 (626)
Q Consensus 123 ----~~~l~~~l~~l~~~~-------------~~~-~r-------~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~- 172 (626)
...+++.+..++... ... .+ ..++.++..++....+. .....++.+...+
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 223444443332110 000 11 12333444444332221 1123344444433
Q ss_pred --CCCCHHHHHHHHHhHHHHHHhhCc------cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhc
Q 006898 173 --QDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (626)
Q Consensus 173 --~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~ 231 (626)
......++..++++|..+.+.... +.....+...+..+.++.+. .|..++..+.++..
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFT 258 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhh
Confidence 223468999999999988775321 01111244455555555444 35556666666543
No 107
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.98 E-value=0.0019 Score=62.92 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=44.4
Q ss_pred cchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhH
Q 006898 139 FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSV 218 (626)
Q Consensus 139 ~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~v 218 (626)
...+..|++.|+.++.+++ +..++-+..++.+|+|++..||..|++.|..++.. .+...+.+.|.++++.+++..
T Consensus 42 ~k~K~LaaQ~I~kffk~FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~E 116 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSAE 116 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchHH
Confidence 4455555555555555553 33444555555555555555665555555555543 334555555555555444444
Q ss_pred HHHHHHHHHHh
Q 006898 219 RLLAVEGCAAL 229 (626)
Q Consensus 219 r~~a~~~l~~l 229 (626)
+...-.+|..+
T Consensus 117 ~~~V~~sL~sl 127 (507)
T 3u0r_A 117 FNLVNNALLSI 127 (507)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44333444333
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.95 E-value=0.012 Score=62.80 Aligned_cols=185 Identities=11% Similarity=0.072 Sum_probs=105.9
Q ss_pred hcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhh--HHHh-HHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHH
Q 006898 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDW-YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK 161 (626)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~--~~~~-l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~ 161 (626)
..++|++..+ +++++..|..|+.++..++..-.... ..+. +.+++..++.|.+..+|..|+.++..++...+.+..
T Consensus 34 ~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 4688888775 56888899999999999986422211 2222 456778888999999999999999998766554322
Q ss_pred -----HHHHHHHHHhcCC--------------CC-------HHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhc
Q 006898 162 -----TELRSIYTQLCQD--------------DM-------PMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQ 212 (626)
Q Consensus 162 -----~~l~~~l~~l~~d--------------~~-------~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~ 212 (626)
..+++.+..++.. .. +.+-..++..|..+++.-.. .......++.+...+.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 2345554444321 01 12223345555555543211 0111234555555543
Q ss_pred CC---chhHHHHHHHHHHHhhcccCc--hhh----hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006898 213 DD---QDSVRLLAVEGCAALGKLLEP--QDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (626)
Q Consensus 213 d~---~~~vr~~a~~~l~~l~~~~~~--~~~----~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~ 271 (626)
+. ..+++..++++|..+.+.... +.+ ...++..+.....+.+. .|..++..+..+...
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFTS 259 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhhh
Confidence 22 357999999999988765432 000 11234444444333333 244555555555443
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.90 E-value=0.0013 Score=63.94 Aligned_cols=128 Identities=20% Similarity=0.057 Sum_probs=91.2
Q ss_pred cchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCH
Q 006898 98 EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMP 177 (626)
Q Consensus 98 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~ 177 (626)
.++..++.|++-|.+..+.+|. +.+.-+.....++.|++..+|..|..-+..++.. +....+...|.++++.+++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCCH
T ss_pred CCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccch
Confidence 4677888888888888888874 4566777778888888888899888888888876 5577888888888888888
Q ss_pred HHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc
Q 006898 178 MVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (626)
Q Consensus 178 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (626)
..+..+-++|..+...-+. ..+-..+.++.+ .++.+|..++..+..-...+++
T Consensus 115 ~E~~~V~~sL~sllk~Dpk----~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~ 167 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKMDAK----GTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPD 167 (507)
T ss_dssp HHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHHHHHHHHhcChH----HHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcch
Confidence 8777777777777664322 223333333333 3567888777777654444443
No 110
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.84 E-value=0.0041 Score=63.57 Aligned_cols=188 Identities=12% Similarity=0.076 Sum_probs=121.6
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH-----HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh--
Q 006898 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-- 430 (626)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~-----~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~-- 430 (626)
.-++.++.+|+..+..+|..+++.|..++..-+.... ...-++.|..++.|+...+|..++..+..+.+....
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence 4578899999999999999999999999876544221 124678899999999999999999999999874321
Q ss_pred h-hHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHHh--ChHHHh-hhhHHHHHhhhcCC----ChH--HHH---
Q 006898 431 G-FFDDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEEF--GPEWAM-QHITPQVLEMINNP----HYL--YRM--- 493 (626)
Q Consensus 431 ~-~~~~~l~p~l~~~l~d~~~----~VR~~a~~~l~~l~~~~--~~~~~~-~~il~~l~~~l~~~----~~~--vR~--- 493 (626)
+ ...+..++.++..+..... .|-+-+...+..+.+.- ....+. ...+|.+..++..+ .|. ...
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~ 281 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLH 281 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHH
Confidence 1 1112345666666654333 55566666777776542 112222 44667777766532 222 222
Q ss_pred HHHHHHHHhccccCh---------HHhhhcHHHHHhhhCCCC--CchHHHHHHHHHHHHHhhh
Q 006898 494 TILRAISLLAPVMGS---------EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIV 545 (626)
Q Consensus 494 ~a~~~l~~i~~~~~~---------~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~~ 545 (626)
.++.++..++..-+. ..+...+++.+.+++..+ ...+|..|+.+++.++...
T Consensus 282 ~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN 344 (651)
T 3grl_A 282 LMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGC 344 (651)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC
Confidence 255556655543221 123455777777776544 4579999999999987654
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.81 E-value=0.0003 Score=63.28 Aligned_cols=147 Identities=16% Similarity=0.068 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCCCh--HHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---
Q 006898 398 LLPAIVELAEDRHW--RVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--- 469 (626)
Q Consensus 398 i~~~l~~~~~~~~~--~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--- 469 (626)
.+|.+.+++.+++. .++..+...+..++.... ........+|.+..+|.+++..+|..|+++|..++..-..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666665555 566666666655553221 1122234578899999988999999999999999752111
Q ss_pred HHHhhhhHHHHHhhhc-CCChHHHHHHHHHHHHhccccCh-HHhhhcHHHHHhhhCC----------------CCCchHH
Q 006898 470 EWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASK----------------DRVPNIK 531 (626)
Q Consensus 470 ~~~~~~il~~l~~~l~-~~~~~vR~~a~~~l~~i~~~~~~-~~~~~~~l~~l~~~l~----------------d~~~~vR 531 (626)
.......+|.+.+++. .++..++..++.++.++...-.. ..+....+|.|..++. ..++.|+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 1223557899999887 57889999999999888754332 2233446777776542 1256899
Q ss_pred HHHHHHHHHHHhh
Q 006898 532 FNVAKVLQSLIPI 544 (626)
Q Consensus 532 ~~a~~~l~~i~~~ 544 (626)
.+|..+|..+...
T Consensus 169 ~na~~~L~nLss~ 181 (233)
T 3tt9_A 169 YNVTGCLRNMSSA 181 (233)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999764
No 112
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.79 E-value=0.0011 Score=59.61 Aligned_cols=188 Identities=12% Similarity=0.026 Sum_probs=93.9
Q ss_pred cchHHHHHHhcCCChH--HHHHHHHHhHHHHHHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh-c-
Q 006898 279 MDLVPAYVRLLRDNEA--EVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-G- 351 (626)
Q Consensus 279 ~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~-~- 351 (626)
...+|.+.++++.+++ +++..++..+..++..-... ......+|.|.+++.+++..++..++.++..++..- .
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3456666677766666 66666666666655432111 122334566666666666666666666666655311 0
Q ss_pred HHHH-HHhHHHHHHHhhc-CCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC
Q 006898 352 KDAT-IEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (626)
Q Consensus 352 ~~~~-~~~l~~~l~~~l~-d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 429 (626)
+... ....+|.+..+|. ..+.++++.++.+|-.+ +..-.
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL---------------------------------------S~~~~ 127 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL---------------------------------------SSNDK 127 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------------------------------HTSGG
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH---------------------------------------HcChh
Confidence 1111 1123444555544 23444554444444444 32111
Q ss_pred -hhhHHHHHHHHHHHHh-------c---------CCchHHHHHHHHHHHHHHHHh--ChHHHh--hhhHHHHHhhhc---
Q 006898 430 -VGFFDDKLGALCMQWL-------Q---------DKVYSIRDAAANNLKRLAEEF--GPEWAM--QHITPQVLEMIN--- 485 (626)
Q Consensus 430 -~~~~~~~l~p~l~~~l-------~---------d~~~~VR~~a~~~l~~l~~~~--~~~~~~--~~il~~l~~~l~--- 485 (626)
...+...-+|.+..++ . ..+..|+..|..+|..++..- ...... ..+++.|..++.
T Consensus 128 ~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~ 207 (233)
T 3tt9_A 128 LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTI 207 (233)
T ss_dssp GHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred hHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhh
Confidence 1111111233333221 1 125689999999998886531 111111 235566665543
Q ss_pred ---CCChHHHHHHHHHHHHhccc
Q 006898 486 ---NPHYLYRMTILRAISLLAPV 505 (626)
Q Consensus 486 ---~~~~~vR~~a~~~l~~i~~~ 505 (626)
+.+.+.+..++.++.++...
T Consensus 208 ~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 208 ADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hcccchhHHHHHHHHHHHHHHhh
Confidence 23567778888888877654
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.05 E-value=0.044 Score=61.53 Aligned_cols=158 Identities=9% Similarity=0.009 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCC--cc----ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHH
Q 006898 253 KSWRVRYMVANQLYELCEAVGPE--PT----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE 326 (626)
Q Consensus 253 ~~~~vR~~a~~~l~~l~~~~~~~--~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 326 (626)
.++.+|.++.-+++.++...... .. ...+...+.+.++..+.+-+..++++|+.++. ...++.+..
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~ 478 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQR 478 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHH
Confidence 46789999999999988765322 11 22344444444555566777788888888765 233444544
Q ss_pred hcc-------CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhh--cCCCHHHHHHHHHhhHHHHhhhchhhHHhh
Q 006898 327 LSS-------DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (626)
Q Consensus 327 l~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~ 397 (626)
++. +...++|.+++.+|..+.... ...+-+++.+.+ .+.++++|.+|+..|-... ++ ..
T Consensus 479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P~----~~ 546 (1056)
T 1lsh_A 479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCIVFFESK---PS----VA 546 (1056)
T ss_dssp TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---CC----HH
T ss_pred hhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHC---cC----HH
Confidence 432 234689999999988887432 123455666666 4567999999988775432 11 23
Q ss_pred HHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhCh
Q 006898 398 LLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV 430 (626)
Q Consensus 398 i~~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~ 430 (626)
.+..+...+ .+++..++......+..+++.-.+
T Consensus 547 ~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 547 LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 444454444 457778877777777776665433
No 114
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.85 E-value=0.37 Score=46.39 Aligned_cols=236 Identities=16% Similarity=0.156 Sum_probs=121.1
Q ss_pred HHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHH
Q 006898 297 RIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRL 376 (626)
Q Consensus 297 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 376 (626)
+...+.....+.-.-.+. +.+.++|.+.++..|++..+|+.+++++...+.. .......+++.+..+++|+++.|.+
T Consensus 42 Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPT-LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVK 118 (386)
T ss_dssp HHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHhccCHH-HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 444444444433222332 3467777777777777778888777777766542 2223456677777777777787777
Q ss_pred HHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHH
Q 006898 377 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDA 455 (626)
Q Consensus 377 ~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~ 455 (626)
.++.+...+... ++..+. ++++. .... ..+..+ ..+-..++..+...+..||..
T Consensus 119 ~~I~~~tslYpl---------~f~~i~---~~~~~~~~~e---~~W~~m----------~~lK~~Il~~~ds~n~GVrl~ 173 (386)
T 3o2t_A 119 KAILTMTQLYKV---------ALQWMV---KSRVISELQE---ACWDMV----------SAMAGDIILLLDSDNDGIRTH 173 (386)
T ss_dssp HHHHHHHHHHHH---------HHHHHH---HC-CCCHHHH---HHHHHH----------HHHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHHHHHHHHH---------HHHHHh---cCCCcchhHH---HHHHHH----------HHHHHHHHHHhccCCcchHHH
Confidence 777776655321 111111 11110 0000 011111 011122333344555666666
Q ss_pred HHHHHHHHHHHhChH--------------------------------HHhhhhHHHHHhhhcCC--ChHHHHHHHHHHHH
Q 006898 456 AANNLKRLAEEFGPE--------------------------------WAMQHITPQVLEMINNP--HYLYRMTILRAISL 501 (626)
Q Consensus 456 a~~~l~~l~~~~~~~--------------------------------~~~~~il~~l~~~l~~~--~~~vR~~a~~~l~~ 501 (626)
+++.+..++...... .-...++..|++.+.++ +...-.+++.+++.
T Consensus 174 aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~ 253 (386)
T 3o2t_A 174 AIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLAN 253 (386)
T ss_dssp HHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHH
Confidence 666666655432100 01144566666655543 33344566777777
Q ss_pred hccccChHHhhhcHHHHHhhhCCCC--------CchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhc
Q 006898 502 LAPVMGSEITCSRLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYL 563 (626)
Q Consensus 502 i~~~~~~~~~~~~~l~~l~~~l~d~--------~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~ 563 (626)
+++.- ..+...+++.+..+-.+. ...||...-..|-.+...-+...+...|...|. .+.
T Consensus 254 Iak~R--P~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~-~Lg 320 (386)
T 3o2t_A 254 IARQR--PMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLV-DLG 320 (386)
T ss_dssp HHHHS--GGGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHH-HTT
T ss_pred HHHhc--HHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHH-HHc
Confidence 76532 235667777766542211 123565655566666655444566677777776 543
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.76 E-value=0.31 Score=44.18 Aligned_cols=129 Identities=14% Similarity=0.222 Sum_probs=87.2
Q ss_pred HHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHH
Q 006898 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 452 (626)
Q Consensus 373 ~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~V 452 (626)
+.+...+....++.-.-.+. +..++++.+..+..+++..+|...++++...+.. ........++.+..++.|+++.|
T Consensus 30 ~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V 106 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQV 106 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence 34555555555543333333 3467777777777778888888888888777633 23445667777888888888888
Q ss_pred HHHHHHHHHHHHHHh-------Ch-------HH-HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898 453 RDAAANNLKRLAEEF-------GP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAP 504 (626)
Q Consensus 453 R~~a~~~l~~l~~~~-------~~-------~~-~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~ 504 (626)
.+.+..+.+.+.... +. -| ....+-..+..+..+.+..+|..++..+..++.
T Consensus 107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 888888777776532 11 12 225556667777788899999999999998763
No 116
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.73 E-value=0.45 Score=45.78 Aligned_cols=113 Identities=13% Similarity=0.070 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhccc----
Q 006898 158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL---- 233 (626)
Q Consensus 158 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~---- 233 (626)
+...+++++.++.+..|++..||+.++..++..+.. ..++...+++.+..++.|+++.|.+.++.+...+....
T Consensus 58 psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 58 PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888899999998888887753 34556778888888888888888888887776655321
Q ss_pred ----Cc----hhhhhh---hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 006898 234 ----EP----QDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (626)
Q Consensus 234 ----~~----~~~~~~---i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~ 272 (626)
+. +..|.. +-..+.....+.+..||..+++.+..+.-..
T Consensus 136 ~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 10 122332 2333445567778889999998888776543
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.57 E-value=0.14 Score=46.41 Aligned_cols=143 Identities=10% Similarity=0.100 Sum_probs=90.3
Q ss_pred hHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHH
Q 006898 142 RVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLL 221 (626)
Q Consensus 142 r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~ 221 (626)
+.....-..++.-+-.+...+++++.++.+..|++..||+..+..++..+.. +..+....++.+..+++|+++.|.+.
T Consensus 32 kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~ 109 (257)
T 3gs3_A 32 KCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKR 109 (257)
T ss_dssp HHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3333333333333333456788888888888899999999999999888754 45677788999999999999999999
Q ss_pred HHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHH
Q 006898 222 AVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 301 (626)
Q Consensus 222 a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 301 (626)
++.+...+. +.++.++ +.+++.. ...-.+...+. .+-..++......+..+|..|+
T Consensus 110 ~I~~~~~iY---------~~~l~~i---~~~~~~~--~~~~~~W~~m~----------~lK~~Il~~~~s~n~gvkl~~i 165 (257)
T 3gs3_A 110 VIQACGSIY---------KNGLQYL---CSLMEPG--DSAEQAWNILS----------LIKAQILDMIDNENDGIRTNAI 165 (257)
T ss_dssp HHHHHHHHH---------HHHHHHH---TTSSSCC--HHHHHHHHHHH----------HHHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHHHHHH---------HHHHHHH---hcCCCCc--chHHHHHHHHH----------HHHHHHHHHHccCCcchHHHHH
Confidence 998887654 2222222 2222100 00111222221 2233344555566778888888
Q ss_pred HhHHHHHHh
Q 006898 302 GKVTKFCRI 310 (626)
Q Consensus 302 ~~l~~l~~~ 310 (626)
+.+..+.-.
T Consensus 166 KF~e~vIl~ 174 (257)
T 3gs3_A 166 KFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877653
No 118
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.09 E-value=0.31 Score=41.76 Aligned_cols=140 Identities=11% Similarity=0.091 Sum_probs=91.9
Q ss_pred HHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc------CCChHHHHHHHHHHHHHHHh--hChhhHHHHHHHHHHHHh
Q 006898 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQWL 445 (626)
Q Consensus 374 vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~r~~~~~~l~~l~~~--~~~~~~~~~l~p~l~~~l 445 (626)
.|.+|+..|..= -| .+.++|.+..+.. -.++..-...++...++... +.-+.+...++|.++.++
T Consensus 24 ~r~~aL~sL~~D---~g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCl 96 (196)
T 4atg_A 24 MKDIAIECLEKE---SG----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCV 96 (196)
T ss_dssp THHHHHHHHHHC---SS----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CC----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 466666666542 11 1456666655532 23555555556666666543 234455677888888875
Q ss_pred cC---CchHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCC--ChHHHHHHHHHHHHhccccChHHhhhcHHHH
Q 006898 446 QD---KVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPV 518 (626)
Q Consensus 446 ~d---~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~--~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~ 518 (626)
-. ....+|..|+..++.++..++.. ....+++..+.+.+.|+ +.....+|+.++..+ |.+.+..-++|.
T Consensus 97 l~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l----G~~~vr~~llP~ 172 (196)
T 4atg_A 97 IGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL----SKNVVNTVIREH 172 (196)
T ss_dssp HCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CHHHHHTHHHHH
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh----HHHHHHHhhhcC
Confidence 21 11279999999999999999874 45677888888877775 577888888888876 446555666687
Q ss_pred HhhhCC
Q 006898 519 VINASK 524 (626)
Q Consensus 519 l~~~l~ 524 (626)
+..+.+
T Consensus 173 l~~~~~ 178 (196)
T 4atg_A 173 AEEYKR 178 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766653
No 119
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.06 E-value=0.95 Score=42.20 Aligned_cols=206 Identities=12% Similarity=0.145 Sum_probs=129.1
Q ss_pred HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh-ch-----hhH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 006898 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GI-----DLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (626)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~-----~~~--~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~ 425 (626)
.+...++..+...+..-+.+.|+.+...+..+...- |. +.+ ...++..+....++++...-.. .+.
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G------~mL 147 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCG------IML 147 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHH------HHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHH------HHH
Confidence 345566777777777777777777777666654321 11 111 1456777777777665322111 111
Q ss_pred Hh-hChhhHHH-----HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HH---HhhhhHHHHHhhhcCCChHHHH
Q 006898 426 SQ-LGVGFFDD-----KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EW---AMQHITPQVLEMINNPHYLYRM 493 (626)
Q Consensus 426 ~~-~~~~~~~~-----~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~---~~~~il~~l~~~l~~~~~~vR~ 493 (626)
.. ..-+.... ..+..++.+.+.++.+|-.-|..++..+...... ++ ..+.++....+++.++|+-+|.
T Consensus 148 Recir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 148 RECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 11 11111111 1222466788899999999898888877654221 11 1256778888899999999999
Q ss_pred HHHHHHHHhccccChHHh------hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--------hhhhcccchHH
Q 006898 494 TILRAISLLAPVMGSEIT------CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------VSTFSVSPFSF 559 (626)
Q Consensus 494 ~a~~~l~~i~~~~~~~~~------~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--------~~~~~i~~~l~ 559 (626)
.++..+|.+.-.-....+ ...-+..++.++.|+..+++..|..++..+.-.-..+ .-.+.++.-|.
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~ 307 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS 307 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999998753222211 2456778889999999999999999998876432111 12345666666
Q ss_pred hhhccCC
Q 006898 560 MLYLNVN 566 (626)
Q Consensus 560 ~~l~~d~ 566 (626)
.+..|.
T Consensus 308 -~f~~d~ 313 (341)
T 1upk_A 308 -KFQNDR 313 (341)
T ss_dssp -HTTTTC
T ss_pred -hCCCCC
Confidence 666666
No 120
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.01 E-value=0.12 Score=57.87 Aligned_cols=130 Identities=13% Similarity=0.041 Sum_probs=77.7
Q ss_pred HHHHHHHhhcC----CCHHHHHHHHHhhHHHHhhhc------hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 006898 359 LLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIG------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (626)
Q Consensus 359 l~~~l~~~l~d----~~~~vr~~a~~~L~~~~~~~~------~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 428 (626)
.+..+..++++ .++.+|..++-+++.+....- +....+.+...+.+.+...+...+..++.+++.+...
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p- 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP- 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-
Confidence 34444555543 457788888888877765431 1122244555555556666777778888888876531
Q ss_pred ChhhHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC--CChHHHHHHHHHH
Q 006898 429 GVGFFDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAI 499 (626)
Q Consensus 429 ~~~~~~~~l~p~l~~~l~-------d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~--~~~~vR~~a~~~l 499 (626)
..++.+..++. +....||.+|+.+|..+.... ...+-+.+.+.+.| .+..+|.+|+..+
T Consensus 471 -------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 471 -------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCIVF 538 (1056)
T ss_dssp -------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred -------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 12334444442 223568888988887776431 23355566666643 5678898888777
Q ss_pred HH
Q 006898 500 SL 501 (626)
Q Consensus 500 ~~ 501 (626)
-.
T Consensus 539 m~ 540 (1056)
T 1lsh_A 539 FE 540 (1056)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 121
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.11 E-value=2.5 Score=36.19 Aligned_cols=140 Identities=13% Similarity=0.077 Sum_probs=80.8
Q ss_pred HHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC------chhHHHHHHHHHHHhhcc--cCchhhhhhhHHHHHHh
Q 006898 178 MVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD------QDSVRLLAVEGCAALGKL--LEPQDCVAHILPVIVNF 249 (626)
Q Consensus 178 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~------~~~vr~~a~~~l~~l~~~--~~~~~~~~~i~~~l~~~ 249 (626)
..|+.|.+.|.. .-| .+.++|.|...+.++ +...-...++...++.+. +.-+.+...++|.+..+
T Consensus 23 ~~r~~aL~sL~~---D~g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEK---ESG----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHH---CSS----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCC----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 346665555543 322 344556555444332 233333445555555433 22367788888877654
Q ss_pred cCC---CCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCCh--HHHHHHHHHhHHHHHHhhChHHHHHhhHH
Q 006898 250 SQD---KSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHILP 322 (626)
Q Consensus 250 ~~d---~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 322 (626)
+-. ....+|..+++.++.++..++.. .....+...+.+.+.|+. ....-+|+.++..++. +.+..-++|
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~----~~vr~~llP 171 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK----NVVNTVIRE 171 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH----HHHHTHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH----HHHHHhhhc
Confidence 311 12279999999999999998863 223456666666666654 5667777777776643 444344457
Q ss_pred HHHHhc
Q 006898 323 CVKELS 328 (626)
Q Consensus 323 ~l~~l~ 328 (626)
.+....
T Consensus 172 ~l~~~~ 177 (196)
T 4atg_A 172 HAEEYK 177 (196)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 665544
No 122
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=89.61 E-value=7 Score=31.46 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch
Q 006898 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ 236 (626)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (626)
..+....+.+-+.+.++.+...++..+..++++.|.... ...+++.+..++...++.|+...+..+...+..++.+
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 345555666666777888888888888888887775321 1234444555555556677777777777777666543
No 123
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=88.97 E-value=15 Score=34.33 Aligned_cols=207 Identities=9% Similarity=0.069 Sum_probs=129.6
Q ss_pred HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh-cHH----HH---HHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh
Q 006898 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKD----AT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (626)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~-~~~----~~---~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~ 389 (626)
+.++..+...+..-++..|..+...+..+...- |.. .+ .+.++..+..+..+++...-.+. -|.++++.-
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHHhH
Confidence 556667777667777888888888777765432 111 11 23566777777776654332222 222222210
Q ss_pred --chhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhHH---HHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006898 390 --GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFD---DKLGALCMQWLQDKVYSIRDAAANNLK 461 (626)
Q Consensus 390 --~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~---~~l~p~l~~~l~d~~~~VR~~a~~~l~ 461 (626)
..-.+....+..+.+..+.++..+-..|...+..+..... .+++. +.+...+..++.+++.-.|+.+.+.||
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 0001112233355567788888888888888877765321 12221 356677788999999999999999999
Q ss_pred HHHHHhChHH------HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC-hHHh-------hhcHHHHHhhhCCCC
Q 006898 462 RLAEEFGPEW------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEIT-------CSRLLPVVINASKDR 526 (626)
Q Consensus 462 ~l~~~~~~~~------~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~-~~~~-------~~~~l~~l~~~l~d~ 526 (626)
.+.-.=.... ....-+..++.++.|++..++..|.+.+..++..-. +..+ .++++.++..+..|+
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9975311111 124557788889999999999999999998875321 1111 256777787877777
No 124
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=88.81 E-value=4.9 Score=32.41 Aligned_cols=70 Identities=11% Similarity=0.024 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc
Q 006898 436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPV 505 (626)
Q Consensus 436 ~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~ 505 (626)
..+..+.+.+..+++.+...|...|..+++..|..+. ...++..+..+++..+..||..++..+......
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 3445566667777778888888888888777776543 244555555555445556666666666555443
No 125
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=88.17 E-value=11 Score=33.10 Aligned_cols=132 Identities=6% Similarity=-0.043 Sum_probs=88.1
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 006898 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVP 283 (626)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~ 283 (626)
..+..+..++.-+.|..|+..+....+...+ ..++.+...+. ..+|.+--..+.+++.+.... +..+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence 4555566667778888888888765433322 33445555543 457777776666677665431 344667
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh
Q 006898 284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350 (626)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~ 350 (626)
.+.....+++.-+|+.|+.++-...+. ...+.+++.+..+..|++..||.+++.+|..+++..
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~~----~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~ 190 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKEK----TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN 190 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGGG----CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhC
Confidence 788888888888888877655322221 122455777777889999999999999999988653
No 126
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=87.52 E-value=6.1 Score=34.84 Aligned_cols=130 Identities=10% Similarity=-0.027 Sum_probs=83.0
Q ss_pred HHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcC-CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHH
Q 006898 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI 206 (626)
Q Consensus 128 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~ 206 (626)
.++..+..++....|..++.+++.......+ +-++.+...+. -++|.+=...+.+++.+.... ...+.+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~~ 128 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPTI 128 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHHH
Confidence 4556666767777888888888766544332 23334444443 456777666666566665432 1335567
Q ss_pred HHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006898 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (626)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 270 (626)
+...+.|++.-+|..|+..+- .. ..+.....+++.+.....|++..||.+.+.+|..++.
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l---~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQL---ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTT---TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHH---HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 778888888877777766442 22 2223345667777778888888888888888777654
No 127
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=87.22 E-value=11 Score=30.71 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHhhhcC------CChHHHHHHHHHHHHhccc
Q 006898 436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINN------PHYLYRMTILRAISLLAPV 505 (626)
Q Consensus 436 ~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~~------~~~~vR~~a~~~l~~i~~~ 505 (626)
..+..+.+-+.++++.+...|...|..+++..|..+. ...++..+.+++.+ .+..||..++..+......
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455666777888888988899888888888887643 36677777777653 4567888888888777665
Q ss_pred cC
Q 006898 506 MG 507 (626)
Q Consensus 506 ~~ 507 (626)
+.
T Consensus 128 f~ 129 (149)
T 3g2s_A 128 LP 129 (149)
T ss_dssp CT
T ss_pred hC
Confidence 43
No 128
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=86.33 E-value=8 Score=32.07 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCc
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP 235 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (626)
.+.+..+.+-+.+.++.+...++..|..+++++|.... ...+++.+..++.. .++.||..++..+......++.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34444555666777788888888888888887775211 12344444455543 3467777777777776665554
No 129
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=85.68 E-value=13 Score=30.20 Aligned_cols=75 Identities=9% Similarity=-0.034 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcC------CchhHHHHHHHHHHHhh
Q 006898 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD------DQDSVRLLAVEGCAALG 230 (626)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d------~~~~vr~~a~~~l~~l~ 230 (626)
-.+.+..+.+-+.+.++.+...++..|..++++.|.... ...++..+.+++.+ .++.||...+..+...+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 344555666667788899999999999999988876321 23456666666653 35688888888888887
Q ss_pred cccCc
Q 006898 231 KLLEP 235 (626)
Q Consensus 231 ~~~~~ 235 (626)
..++.
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 77654
No 130
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=85.46 E-value=13 Score=30.12 Aligned_cols=75 Identities=9% Similarity=-0.056 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc----hhhhHHHHHHHhhcC------CchhHHHHHHHHHHHhh
Q 006898 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD------DQDSVRLLAVEGCAALG 230 (626)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~l~~d------~~~~vr~~a~~~l~~l~ 230 (626)
..+.+..+.+-+++.++.+...|+..|..++++.|... ....++..+.+++.+ .+..||..++..+...+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 34455566666788899999999999999999888632 123566667777664 35689998888888887
Q ss_pred cccCc
Q 006898 231 KLLEP 235 (626)
Q Consensus 231 ~~~~~ 235 (626)
..++.
T Consensus 116 ~~f~~ 120 (148)
T 1mhq_A 116 VWFPE 120 (148)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 76654
No 131
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=84.68 E-value=21 Score=31.66 Aligned_cols=158 Identities=11% Similarity=0.076 Sum_probs=90.2
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc-CCCCHHHHHHH-HHHHHHHHHHhCCCccccchH
Q 006898 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMV-ANQLYELCEAVGPEPTRMDLV 282 (626)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vR~~a-~~~l~~l~~~~~~~~~~~~l~ 282 (626)
..+..+.+++..+.|..|+..+....+...++ .++.+..++ ...+|.+--.. ...++.+.... +....
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~ 133 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELIS 133 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHH
Confidence 34555666677778888888876544333332 223333332 35677765544 35566665542 22345
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHH
Q 006898 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 362 (626)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 362 (626)
+.+.....|+++-+|+.++..+-....... ...+.+.+..+..|++..|+.++..+|..++..... .+.+.
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d----~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~-----~v~~f 204 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYKQKMD----EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD-----VVWEY 204 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCGGGCC----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH-----HHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhCCC----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH-----HHHHH
Confidence 566677777787777777665422211111 134556677778899999999999988888765322 22233
Q ss_pred HHHhhcCCCHHHHHHHHHhhH
Q 006898 363 FLSLLKDEFPDVRLNIISKLD 383 (626)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~L~ 383 (626)
+... .-++-.+..|++.|+
T Consensus 205 l~~~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 205 VQNN--ELAPLSKREAIKHIK 223 (232)
T ss_dssp HHHS--CCCHHHHHHHTTTTH
T ss_pred HHHC--CCCHHHHHHHHHhcc
Confidence 3322 334555555555554
No 132
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=84.49 E-value=19 Score=31.96 Aligned_cols=159 Identities=9% Similarity=-0.063 Sum_probs=87.3
Q ss_pred HHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHH-HHhHHHHHHhhCccchhhhHHHH
Q 006898 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSA-ASNLGKFAATVEPAHLKTDIMSI 206 (626)
Q Consensus 128 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a-~~~l~~l~~~~~~~~~~~~ll~~ 206 (626)
.++..+..++....|..|+..+........++....+-. +.. ..++|.+=... ...++.+....+ ....+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~-~l~--~~~nWd~~D~~a~~~~g~~~~~~p-----~~~~~~ 135 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEE-LIV--TKSWWDSVDSIVPTFLGDIFLKHP-----ELISAY 135 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHH-HHT--SSCCHHHHHHHTTTHHHHHHHHCG-----GGGGGT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHc--cCCChHHHHHhhHHHHHHHHHHCH-----HHHHHH
Confidence 345555566655667777776665444444433333322 222 35667765444 355566655421 124455
Q ss_pred HHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHH
Q 006898 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 286 (626)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 286 (626)
+...+.|++.-+|..|+..+-. .. .......+.+.+.....|++..||.+.+.+|..++.. .++.+.+++.
T Consensus 136 l~~W~~s~~~w~rR~ai~~~l~---~~-~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-----~p~~v~~fl~ 206 (232)
T 3jxy_A 136 IPKWIASDNIWLQRAAILFQLK---YK-QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-----NPDVVWEYVQ 206 (232)
T ss_dssp HHHHHHSSCHHHHHHHHHTTTT---CG-GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-----CHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHH---HH-hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-----CHHHHHHHHH
Confidence 6677888877777777655421 11 1122345666777788888999998888888776643 1234444443
Q ss_pred HhcCCChHHHHHHHHHhHH
Q 006898 287 RLLRDNEAEVRIAAAGKVT 305 (626)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~ 305 (626)
+- .-++.++..|++.|+
T Consensus 207 ~~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 207 NN--ELAPLSKREAIKHIK 223 (232)
T ss_dssp HS--CCCHHHHHHHTTTTH
T ss_pred HC--CCCHHHHHHHHHhcc
Confidence 32 223455555555554
No 133
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=82.36 E-value=18 Score=30.19 Aligned_cols=74 Identities=9% Similarity=-0.027 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcC------CchhHHHHHHHHHHHhhc
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD------DQDSVRLLAVEGCAALGK 231 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d------~~~~vr~~a~~~l~~l~~ 231 (626)
.+....+.+-+++.++.|...++..|..+++++|.... ...++..+..++.. ....||..++..+...+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44555666777888999999999999999988775321 23456666666642 356899999998888887
Q ss_pred ccCc
Q 006898 232 LLEP 235 (626)
Q Consensus 232 ~~~~ 235 (626)
.++.
T Consensus 129 ~f~~ 132 (171)
T 1juq_A 129 ALPE 132 (171)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 7654
No 134
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=82.03 E-value=21 Score=29.78 Aligned_cols=95 Identities=7% Similarity=0.030 Sum_probs=61.4
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 006898 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE 482 (626)
Q Consensus 407 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~ 482 (626)
.+++|..-...++.+..- . .-....+..+.+.+..+++.|...|...|..+++..|..+. ...++..+..
T Consensus 27 ~~~Dw~~ileicD~I~~~-----~-~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~k 100 (171)
T 1juq_A 27 RQEDWEYIIGFCDQINKE-----L-EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIK 100 (171)
T ss_dssp SSCCHHHHHHHHHHHHHS-----T-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence 346776544444433321 1 11233455667777888999999999999999888776543 3566777777
Q ss_pred hhcC------CChHHHHHHHHHHHHhccccC
Q 006898 483 MINN------PHYLYRMTILRAISLLAPVMG 507 (626)
Q Consensus 483 ~l~~------~~~~vR~~a~~~l~~i~~~~~ 507 (626)
++.. .+..||..++..+......++
T Consensus 101 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 101 VVSPKYLGDRVSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp HHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 6642 356788888888887765443
No 135
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=81.37 E-value=20 Score=29.07 Aligned_cols=95 Identities=7% Similarity=-0.007 Sum_probs=61.3
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 006898 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE 482 (626)
Q Consensus 407 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~ 482 (626)
.+++|..-...++.+..- + .-....+..+.+-++.+++.+...|...|..+++..|..+. ...++..+..
T Consensus 15 ~~~dw~~~leicD~I~~~-----~-~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~k 88 (148)
T 1mhq_A 15 SEQDWSAIQNFCEQVNTD-----P-NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIK 88 (148)
T ss_dssp SSCCHHHHHHHHHHHHHS-----S-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence 356776544444433321 1 11233455566677888889999999999888888887642 3667777777
Q ss_pred hhcC------CChHHHHHHHHHHHHhccccC
Q 006898 483 MINN------PHYLYRMTILRAISLLAPVMG 507 (626)
Q Consensus 483 ~l~~------~~~~vR~~a~~~l~~i~~~~~ 507 (626)
++.+ .+..||..++..+......+.
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (148)
T 1mhq_A 89 VLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (148)
T ss_dssp TTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 7653 356788888887777765443
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=80.71 E-value=19 Score=31.70 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCch
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQ 236 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~ 236 (626)
.+.+..+.+-+++.++.+...++..|..++++.|.... ...++..+.++++. .+..|+..++..+...+..+..+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 44555566666788888888888888888888776311 22344444444433 35578888888777777666543
No 137
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=79.36 E-value=47 Score=32.06 Aligned_cols=207 Identities=11% Similarity=0.095 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh------CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh-hChHH-HHHhhHH
Q 006898 251 QDKSWRVRYMVANQLYELCEAV------GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-LNPEL-AIQHILP 322 (626)
Q Consensus 251 ~d~~~~vR~~a~~~l~~l~~~~------~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~~~~-~~~~l~~ 322 (626)
.|++|.--..+.+.+..+...- .+......++--++.++..+|+.-|...-..|..+-.. .+... +.+.+-.
T Consensus 94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn 173 (403)
T 3fga_B 94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 173 (403)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4667776667777766654431 12222334666678889999999998887777765432 22211 1122222
Q ss_pred HHHHhccC--CCHHHHHHHHHHHHhhhhhhc---HHHHHHhHHHHHHHhhcCCCHHH-HHHHHHhhHHHHhhhchhhHHh
Q 006898 323 CVKELSSD--SSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQ 396 (626)
Q Consensus 323 ~l~~l~~d--~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~L~~~~~~~~~~~~~~ 396 (626)
.+.+...+ ....+ ..+.+.++.+...+. ++....-+...++.+-+-+...+ -.....++..+.+. ...+..
T Consensus 174 if~~fiye~e~~~GI-aeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK--Dp~L~~ 250 (403)
T 3fga_B 174 IFYRFIYETEHHNGI-AELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTE 250 (403)
T ss_dssp HHHHHHHTTCCCTTH-HHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH--CGGGHH
T ss_pred HHHHHhcCcccCCCH-HHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh--CchhHH
Confidence 23332221 11122 234555555555442 12222223333333333322111 11222222222221 111223
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHH---HHHHHHHhcCCchHHHHHHHHHH
Q 006898 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLQDKVYSIRDAAANNL 460 (626)
Q Consensus 397 ~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l---~p~l~~~l~d~~~~VR~~a~~~l 460 (626)
.++..+.+..--.+..-....+.-+..+....++..+.... ...+-.++.+++..|-+.|...+
T Consensus 251 ~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 251 PVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 44455555545556666677778888888888877766544 44455667888888888887654
No 138
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=78.75 E-value=52 Score=32.29 Aligned_cols=208 Identities=9% Similarity=0.054 Sum_probs=112.4
Q ss_pred CCCHHHHHHHHHHHHhhhhh--h----cHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc-hh-hHHhhHHHH
Q 006898 330 DSSQHVRSALASVIMGMAPL--L----GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-ID-LLSQSLLPA 401 (626)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~~--~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~-~~-~~~~~i~~~ 401 (626)
+++|..-+.+.+.+..+... + .+..+...++-.++.++..+|+.-|......|..+...+. -. .+...+-..
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 207 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655554322 1 1223334456667777777777777777777766654432 21 122233333
Q ss_pred HHHHhcC-CChHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHHHhChHHHhhhh
Q 006898 402 IVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEWAMQHI 476 (626)
Q Consensus 402 l~~~~~~-~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~-VR~~a~~~l~~l~~~~~~~~~~~~i 476 (626)
+.+++.+ ....--...++.++.+.+++. ++.....+...++.+-..+... --..-..|+.+++.. .+ .....+
T Consensus 208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp-~L~~~v 285 (449)
T 2npp_B 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DS-TLTEPV 285 (449)
T ss_dssp HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH-CG-GGHHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc-Cc-HhHHHH
Confidence 3444322 222222356777888877664 2223333344444444333222 122333444444433 11 123344
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhh---cHHHHHhhhCCCCCchHHHHHHHHHH
Q 006898 477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS---RLLPVVINASKDRVPNIKFNVAKVLQ 539 (626)
Q Consensus 477 l~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~---~~l~~l~~~l~d~~~~vR~~a~~~l~ 539 (626)
+..+++.---.+..-....+.-+..+.+.++++.+.. .+...+..+++.+...|-..|+..+.
T Consensus 286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~ 351 (449)
T 2npp_B 286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 351 (449)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHC
Confidence 4445444344566666778888888888888876644 35556667788888888888777663
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=76.88 E-value=19 Score=31.74 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=52.1
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH----HHhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhhhhcH
Q 006898 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGK 352 (626)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~ 352 (626)
..+.+..+.+-++..++.++..|+..|..+.++.|.... ...++..+..+++ ..+..||.-+.+.+..++..|..
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 456777788888888999999999999999988886522 1233333333332 35678888888888777766643
No 140
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=75.91 E-value=38 Score=30.22 Aligned_cols=158 Identities=17% Similarity=0.219 Sum_probs=86.0
Q ss_pred cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchH
Q 006898 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (626)
Q Consensus 10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~ 89 (626)
.+..++..+.+++ .|..|+..|++- ....+.+-|+++... .+..+..+.+-.+.+.+..+.
T Consensus 4 ~i~qli~~L~~p~--~Re~AL~eLsk~------Re~~~~La~~LW~S~----Gtia~LLQEIisiYp~lspp~------- 64 (268)
T 2fv2_A 4 KIYQWINELSSPE--TRENALLELSKK------RESVPDLAPMLWHSF----GTIAALLQEIVNIYPSINPPT------- 64 (268)
T ss_dssp HHHHHHHHTSSTT--THHHHHHHHHHH------TTTCTTHHHHHHHST----THHHHHHHHHHHTGGGBTTBC-------
T ss_pred HHHHHHHHhcCch--hHHHHHHHHHHh------hhccccHHHHHHhcc----CHHHHHHHHHHHHcccCCCcc-------
Confidence 3456666677555 588888777763 113356666666532 223333344444444333221
Q ss_pred HHhhhhcCcchHHHHH-HHHHHHHHHhhcCh------hhHHHhHHHHHHHHhcCC-ccchhHHHhhHhHHhcCCCChHH-
Q 006898 90 PLETLCTVEETCVRDK-AVESLCRIGSQMRE------SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDIL- 160 (626)
Q Consensus 90 ~l~~l~~~~~~~vR~~-a~~~l~~i~~~~~~------~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~- 160 (626)
+ .....-|-. |...+..++.+-.. ..+--++.|++....++. .+..|.++...+|.+...-+++.
T Consensus 65 ----L--t~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi 138 (268)
T 2fv2_A 65 ----L--TAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVI 138 (268)
T ss_dssp ----C--CHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHH
T ss_pred ----c--CHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHH
Confidence 0 011112222 22222334432211 112234667765443333 35578889999999887655542
Q ss_pred ----HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHH
Q 006898 161 ----KTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (626)
Q Consensus 161 ----~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~ 192 (626)
..+++|.++..++..+.--|..|...+.++..
T Consensus 139 ~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 139 NFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 35688888888888888777777777777654
No 141
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=73.60 E-value=22 Score=29.16 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=53.3
Q ss_pred hhhHHHHHhhhc-CCChHHHHHHHHHHHHhccccChHHh----hhcHHHH-HhhhCC---CCCchHHHHHHHHHHHHHhh
Q 006898 474 QHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPV-VINASK---DRVPNIKFNVAKVLQSLIPI 544 (626)
Q Consensus 474 ~~il~~l~~~l~-~~~~~vR~~a~~~l~~i~~~~~~~~~----~~~~l~~-l~~~l~---d~~~~vR~~a~~~l~~i~~~ 544 (626)
...+..|.+.++ .+|+.+...|+..+..+++.||..+. ...++.. +.+.+. ++...||..++..+..+...
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 445556666676 58899999999999999999987643 2345555 555553 33458999999999988877
Q ss_pred hcc
Q 006898 545 VDQ 547 (626)
Q Consensus 545 ~~~ 547 (626)
++.
T Consensus 132 f~~ 134 (157)
T 1elk_A 132 FRS 134 (157)
T ss_dssp HTT
T ss_pred cCC
Confidence 654
No 142
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=71.52 E-value=41 Score=27.56 Aligned_cols=74 Identities=5% Similarity=-0.087 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHH-HHHhhc---CCchhHHHHHHHHHHHhhcc
Q 006898 162 TELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSI-FEDLTQ---DDQDSVRLLAVEGCAALGKL 232 (626)
Q Consensus 162 ~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~-l~~l~~---d~~~~vr~~a~~~l~~l~~~ 232 (626)
.+....+.+-++ ..++.+...|+..|..++++.|.... ...++.. +.+++. ++...||..++..+...+..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 344444555555 57788888888888888888775321 1234444 444443 23347788777777777665
Q ss_pred cCc
Q 006898 233 LEP 235 (626)
Q Consensus 233 ~~~ 235 (626)
++.
T Consensus 132 f~~ 134 (157)
T 1elk_A 132 FRS 134 (157)
T ss_dssp HTT
T ss_pred cCC
Confidence 543
No 143
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=71.11 E-value=43 Score=27.64 Aligned_cols=94 Identities=10% Similarity=0.132 Sum_probs=45.6
Q ss_pred cCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH----HhhHHHHHHH
Q 006898 329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVE 404 (626)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~----~~~i~~~l~~ 404 (626)
.+++|..-..+|..+..-. ......+..+.+-++..++.+...|+..|..+.+.-|.... ....+..+.+
T Consensus 29 ~~~Dw~~~leicD~I~~~~------~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~ 102 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGSTP------NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRA 102 (163)
T ss_dssp SSCCHHHHHHHHHHHHHSS------SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 3566766555554443311 11223444555666666677777776666666665554321 1223333333
Q ss_pred HhcC-CChHHHHHHHHHHHHHHHhh
Q 006898 405 LAED-RHWRVRLAIIEYIPLLASQL 428 (626)
Q Consensus 405 ~~~~-~~~~~r~~~~~~l~~l~~~~ 428 (626)
++.. .+..||..+++.+..++..+
T Consensus 103 l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 103 VIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHh
Confidence 3332 33455555555555554444
No 144
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=70.27 E-value=86 Score=30.80 Aligned_cols=248 Identities=11% Similarity=0.106 Sum_probs=123.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHH--hC----CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh-hChH-HHHHhhHH
Q 006898 251 QDKSWRVRYMVANQLYELCEA--VG----PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-LNPE-LAIQHILP 322 (626)
Q Consensus 251 ~d~~~~vR~~a~~~l~~l~~~--~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~~~-~~~~~l~~ 322 (626)
.|++|.--..+.+.|-.+... +. +......++-.++.++..+|+.-|......|..+-.. .+.. .+.+.+-.
T Consensus 127 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 206 (449)
T 2npp_B 127 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206 (449)
T ss_dssp CCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777666666666665532 11 1122335677778888888888888887777665442 2322 11122222
Q ss_pred HHHHhccC--CCHHHHHHHHHHHHhhhhhhc---HHHHHHhHHHHHHHhhcCCCHHH-HHHHHHhhHHHHhhhchhhHHh
Q 006898 323 CVKELSSD--SSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQ 396 (626)
Q Consensus 323 ~l~~l~~d--~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~L~~~~~~~~~~~~~~ 396 (626)
.+.+...+ ....+ ..+.+.++.+...+. ++....-+...++.+.+...... -..-..++..+.+. ...+..
T Consensus 207 if~~fi~e~e~~nGI-aeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~ 283 (449)
T 2npp_B 207 IFYRFIYETEHHNGI-AELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTE 283 (449)
T ss_dssp HHHHHHHTCSCCSCH-HHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH--CGGGHH
T ss_pred HHHHHhcccCCCCCH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc--CcHhHH
Confidence 23333221 11111 234455555554443 22222223333444444332111 11122222222221 112223
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHH---HHHHHHHhcCCchHHHHHHHHHHHH--HHHHhChHH
Q 006898 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLQDKVYSIRDAAANNLKR--LAEEFGPEW 471 (626)
Q Consensus 397 ~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l---~p~l~~~l~d~~~~VR~~a~~~l~~--l~~~~~~~~ 471 (626)
.++..+.+..--.+..-....+.-+..+....++..+.... ...+-.++.+++..|-+.|...|.. +...+..
T Consensus 284 ~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~-- 361 (449)
T 2npp_B 284 PVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD-- 361 (449)
T ss_dssp HHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT--
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh--
Confidence 44555555554556666677778888888888887776544 4445667888999998888865521 1111111
Q ss_pred HhhhhHHHHHhhh-----cCCChHHHHHHHHHHHHhc
Q 006898 472 AMQHITPQVLEMI-----NNPHYLYRMTILRAISLLA 503 (626)
Q Consensus 472 ~~~~il~~l~~~l-----~~~~~~vR~~a~~~l~~i~ 503 (626)
....++|.+...+ ++=|..+|..+..++..+.
T Consensus 362 n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~ 398 (449)
T 2npp_B 362 NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFM 398 (449)
T ss_dssp THHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHH
T ss_pred chhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 1233444443322 1224556666666666443
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=69.25 E-value=34 Score=29.98 Aligned_cols=73 Identities=8% Similarity=0.051 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccC
Q 006898 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLE 234 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~ 234 (626)
.+.+..+.+-+.+.++.+...++..|..++.+.|.... ...++..+..++++ .+..||..+++.+...+..+.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 34444555666778888888888888888877664211 12244444444433 345777777777766665554
No 146
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=68.66 E-value=31 Score=27.57 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=42.5
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (626)
Q Consensus 404 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~ 470 (626)
+...+.+|..-...++-+..+...... .+...+++.+.+.++++.+.+...|+++|..++...++.
T Consensus 18 ~ATs~d~~~~pgylm~EIA~~T~~s~~-~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~ 83 (140)
T 1vdy_A 18 AVTSDEDKVAPVYKLEEICDLLRSSHV-SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE 83 (140)
T ss_dssp HTTCSCSSCCCHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH
T ss_pred HHhcCCCCCCcHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH
Confidence 334455554444444444444332222 223678899999999999999999999999988764443
No 147
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=65.35 E-value=76 Score=28.33 Aligned_cols=109 Identities=12% Similarity=0.120 Sum_probs=52.8
Q ss_pred hhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh-hC
Q 006898 239 VAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-LN 312 (626)
Q Consensus 239 ~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~ 312 (626)
.-++.|++.....+. ...+|-+....+|.+.+.-..+. ...+++|..+..++-.+.-.+.-|...+.++... .|
T Consensus 99 plyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~G 178 (268)
T 2fv2_A 99 PLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTG 178 (268)
T ss_dssp GGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHH
T ss_pred hHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchh
Confidence 344556654443332 23466666666665554311111 1235677777777665555566666666555431 11
Q ss_pred hH----------HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhh
Q 006898 313 PE----------LAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (626)
Q Consensus 313 ~~----------~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~ 347 (626)
-. .+...+-..+.++.+++++++-+.++++...++
T Consensus 179 L~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 179 LAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 10 011112223334555666666666666555554
No 148
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=62.53 E-value=1.1e+02 Score=29.40 Aligned_cols=249 Identities=9% Similarity=0.039 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHHHHHhhhhh--hc----HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch-h-hHHhhHHHH
Q 006898 330 DSSQHVRSALASVIMGMAPL--LG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-D-LLSQSLLPA 401 (626)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~~--~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~-~-~~~~~i~~~ 401 (626)
+++|..-+.+.+.+..+... +. +..+...++-.++.++..+|+.=|...-..|..+...+.. . .+...+-..
T Consensus 95 e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inni 174 (403)
T 3fga_B 95 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 174 (403)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 45666556555555544332 11 1112233555566777777777777777766665443321 1 112223333
Q ss_pred HHHHhcC-CChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHHHhChHHHhhhh
Q 006898 402 IVELAED-RHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEWAMQHI 476 (626)
Q Consensus 402 l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~-VR~~a~~~l~~l~~~~~~~~~~~~i 476 (626)
+.+++.+ ....--...++.++.+.+++.. +.....+...++.+-..+... --..-..|+.++++. .+ .....+
T Consensus 175 f~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK-Dp-~L~~~v 252 (403)
T 3fga_B 175 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DS-TLTEPV 252 (403)
T ss_dssp HHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH-CG-GGHHHH
T ss_pred HHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh-Cc-hhHHHH
Confidence 3343322 2222233577888888887642 222233334444443333221 123334455444433 11 123344
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhh---cHHHHHhhhCCCCCchHHHHHHHHHHH--HHhhhcc--ch
Q 006898 477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS---RLLPVVINASKDRVPNIKFNVAKVLQS--LIPIVDQ--SV 549 (626)
Q Consensus 477 l~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~---~~l~~l~~~l~d~~~~vR~~a~~~l~~--i~~~~~~--~~ 549 (626)
+..+++.---.+..-....+.-+..+.+.++++.+.. .+...+..+++++...|-..|+..+.+ +...+.+ ..
T Consensus 253 i~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~ 332 (403)
T 3fga_B 253 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAK 332 (403)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHH
Confidence 4444444444567777778888888888888776543 345556667788888888777766622 2222211 12
Q ss_pred hhhcccchHHhhh-ccCCCcccccccccCchhHHHHHHHHHH
Q 006898 550 STFSVSPFSFMLY-LNVNNFNVGFIFAAFPLVLFSCLALNYC 590 (626)
Q Consensus 550 ~~~~i~~~l~~~l-~~d~d~~vr~~~~~~~~~~~a~~al~~~ 590 (626)
..+.+.|.|. +. .+.=+..|+. .+..++..+
T Consensus 333 IlPii~p~L~-~~~~~HWn~~v~~---------l~~~vlk~l 364 (403)
T 3fga_B 333 ILPIMFPSLY-RNSKTHWNKTIHG---------LIYNALKLF 364 (403)
T ss_dssp HHHHHHHHHH-HTTSCCSCHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHccCHHHHH---------HHHHHHHHH
Confidence 3344555555 32 3343566666 666666544
No 149
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=61.94 E-value=1.1e+02 Score=29.25 Aligned_cols=209 Identities=9% Similarity=0.053 Sum_probs=116.0
Q ss_pred cCCCHHHHHHHHHHHHhhhhh--hc----HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc-hh-hHHhhHHH
Q 006898 329 SDSSQHVRSALASVIMGMAPL--LG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-ID-LLSQSLLP 400 (626)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~--~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~-~~-~~~~~i~~ 400 (626)
.+++|..-+.+.+.+..+... +. +..+...++-.++.++..+|+.-|......|..+...+. -. .+.+.+-.
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777666666666555432 22 122233466667778888888888888887776654432 21 12233334
Q ss_pred HHHHHhcCC-ChHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchHH-HHHHHHHHHHHHHHhChHHHhhh
Q 006898 401 AIVELAEDR-HWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSI-RDAAANNLKRLAEEFGPEWAMQH 475 (626)
Q Consensus 401 ~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~V-R~~a~~~l~~l~~~~~~~~~~~~ 475 (626)
.+.+...+. ...--...++.++.+.+++. ++.....+...++.+...+...+ -..-..|+.++++. ++ .....
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp-~L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DS-TLTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH-CG-GGHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc-Cc-hhHHH
Confidence 445554332 22223457788888888775 23333334444444443332221 12233444444433 11 12334
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhh---cHHHHHhhhCCCCCchHHHHHHHHHH
Q 006898 476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS---RLLPVVINASKDRVPNIKFNVAKVLQ 539 (626)
Q Consensus 476 il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~---~~l~~l~~~l~d~~~~vR~~a~~~l~ 539 (626)
++..+.+.---.+..-....+.-+..+.+.++++.+.. .+...+.++++.+.-.|-..|+..+.
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 44444443333455556777788888888888776543 45555667788888888877776663
No 150
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=61.51 E-value=34 Score=27.28 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhh
Q 006898 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 194 (626)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~ 194 (626)
+...++++.+.+-+++.++.++..+++.|..++...
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G 80 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS 80 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC
Confidence 445789999999999999999999999998887643
No 151
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=60.55 E-value=1.8e+02 Score=31.15 Aligned_cols=263 Identities=11% Similarity=0.059 Sum_probs=123.1
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--hHHHHHhhHHHHHHhccC---CCHHHHHHHHHHHHhhhhhhcH-H
Q 006898 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSD---SSQHVRSALASVIMGMAPLLGK-D 353 (626)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d---~~~~vr~~~~~~l~~l~~~~~~-~ 353 (626)
.+.|.+...+-..+..+...+..++..++..-+ ++.+.+.++..+-..++. ..+.--.++++++..++..+-. .
T Consensus 339 ~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 339 IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 356666666666777777777777777765433 144444444444444443 3344334556666666543322 1
Q ss_pred HHHHhHHHH---HHHhhcCCCHHHHHHHHHhhHHHHhhhchh--------------------------------------
Q 006898 354 ATIEQLLPI---FLSLLKDEFPDVRLNIISKLDQVNQVIGID-------------------------------------- 392 (626)
Q Consensus 354 ~~~~~l~~~---l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~-------------------------------------- 392 (626)
.+..++.+. ++..+.-.|+.--..++..+..+...++..
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d 498 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVD 498 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCC
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcccccccccccc
Confidence 122233333 333333344444444555554443321100
Q ss_pred ----------------hHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchH-HHH
Q 006898 393 ----------------LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS-IRD 454 (626)
Q Consensus 393 ----------------~~~~~i~~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~-VR~ 454 (626)
.+....+..+..++++ .+..+-...-.++..+...++++.+.. ++.-+.+...+.... ...
T Consensus 499 ~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~-~l~k~~~fv~~n~~~~a~~ 577 (799)
T 1vsy_4 499 DELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNY-FASLLNRNFWSNDSFKEKD 577 (799)
T ss_dssp TTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHH-HHHHHHHHHHSCSCCCSSS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHhhhhhHHH
Confidence 1112233344444432 222222333444555555555554432 333333433322211 111
Q ss_pred HHHHH----HHHHHHHhChHHHhhhhHHHHHhhhc----CC------------ChHHHHHHHHHHHHhccccChH--Hhh
Q 006898 455 AAANN----LKRLAEEFGPEWAMQHITPQVLEMIN----NP------------HYLYRMTILRAISLLAPVMGSE--ITC 512 (626)
Q Consensus 455 ~a~~~----l~~l~~~~~~~~~~~~il~~l~~~l~----~~------------~~~vR~~a~~~l~~i~~~~~~~--~~~ 512 (626)
..... ++.++.. .++ ....++|.+...+. +. ....-...+..++.++...|.. .+.
T Consensus 578 ~v~~L~~~~~~a~~~~-~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~ 655 (799)
T 1vsy_4 578 PNYELVTIPLAALVRR-NNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYS 655 (799)
T ss_dssp CCTHHHHHHHHHHHHH-CGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTH
T ss_pred HHHHHHHHHHHHHHHh-CHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccH
Confidence 11111 2333333 444 45566666653221 11 2334455666777777766654 245
Q ss_pred hcHHHHHhhhC-CCCCchHHHHHHHHHHHHHhhh
Q 006898 513 SRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIV 545 (626)
Q Consensus 513 ~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~ 545 (626)
++++..+..++ +.++..+-..+++.+..+...+
T Consensus 656 deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~sL 689 (799)
T 1vsy_4 656 DELITFMKYLYDNVTNPPLDVITSIVIHSALATL 689 (799)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh
Confidence 56666666555 3444444477888888877655
No 152
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=59.89 E-value=1.1e+02 Score=28.52 Aligned_cols=72 Identities=10% Similarity=-0.029 Sum_probs=39.2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh-hChh-hH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Q 006898 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LGVG-FF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (626)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~-~~~~-~~-~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~ 467 (626)
..-+..|.+...+.+.....-++.++..+-.. .|-. .+ .+.++.-+..++......|-+.|.+.|..++..-
T Consensus 159 ~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 159 SEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp TTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred hccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccC
Confidence 34445555555555555555555555554332 1110 11 2334555666666677777777777777776653
No 153
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=56.54 E-value=71 Score=25.16 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=52.7
Q ss_pred ChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch
Q 006898 312 NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (626)
Q Consensus 312 ~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~ 391 (626)
+.+.+ ..++|.|...++|.||.+...++..+.... +.++|.+...|+..|..-....+.. +...+..
T Consensus 25 ~~~~i-~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~ywil~~---lv~~~~~ 91 (134)
T 3ut4_A 25 IDNEI-EPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKYWVIKL---MIPYLIY 91 (134)
T ss_dssp CHHHH-HHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHHHHHHH---HGGGCCH
T ss_pred CHHHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHHHHHHH---HHHcCCH
Confidence 44443 566788888899999998888877766542 3566777777777766655444333 2333333
Q ss_pred hhHHhhHHHHHHHHhcCC
Q 006898 392 DLLSQSLLPAIVELAEDR 409 (626)
Q Consensus 392 ~~~~~~i~~~l~~~~~~~ 409 (626)
+. ...+.+.+.++...+
T Consensus 92 ~~-~~~l~~eL~rl~~~p 108 (134)
T 3ut4_A 92 PN-KQLVKSELERLSSLE 108 (134)
T ss_dssp HH-HHHHHHHHHHHHTCC
T ss_pred HH-HHHHHHHHHHHHhCC
Confidence 22 245667777776554
No 154
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=53.72 E-value=80 Score=24.88 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHH
Q 006898 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL 516 (626)
Q Consensus 437 l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l 516 (626)
++|.++..++|-|+.+....+..|..+- +.++|.+.+.+.+.+..=+. .++..++..++.+ ....+.
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~~-~~~~l~ 98 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKY---WVIKLMIPYLIYP-NKQLVK 98 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHH---HHHHHHGGGCCHH-HHHHHH
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHH---HHHHHHHHcCCHH-HHHHHH
Confidence 4445555555555555544444443321 23455555544443332222 2333333333332 344555
Q ss_pred HHHhhhCCCCC-----chHHHHHHHHHHHH
Q 006898 517 PVVINASKDRV-----PNIKFNVAKVLQSL 541 (626)
Q Consensus 517 ~~l~~~l~d~~-----~~vR~~a~~~l~~i 541 (626)
|.|..+...+. .+|...|-+.|..+
T Consensus 99 ~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 99 SELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 55665554442 33555555554443
No 155
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=51.44 E-value=1.7e+02 Score=28.04 Aligned_cols=208 Identities=11% Similarity=0.107 Sum_probs=104.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHH------hCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh-hChH-HHHHhhHH
Q 006898 251 QDKSWRVRYMVANQLYELCEA------VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-LNPE-LAIQHILP 322 (626)
Q Consensus 251 ~d~~~~vR~~a~~~l~~l~~~------~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~~~-~~~~~l~~ 322 (626)
.|++|.--..+.+.+-.+... ..+.......+-.++.++..+|+.-|......+..+-.. .+.. .+.+.+-.
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467787666677766665542 122333445777788888999999998888777665432 2222 12222223
Q ss_pred HHHHhccCCCH-HHHHHHHHHHHhhhhhhc---HHHHHHhHHHHHHHhhcCCCHHH-HHHHHHhhHHHHhhhchhhHHhh
Q 006898 323 CVKELSSDSSQ-HVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQS 397 (626)
Q Consensus 323 ~l~~l~~d~~~-~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~L~~~~~~~~~~~~~~~ 397 (626)
.+.+...+... .=-..+.+.++.+...+. ++....-+...++.+.+...-.. -..-..++..+.+. ...+...
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc--CchhHHH
Confidence 33333322111 111234555555555443 22222223333333333221111 11111222222211 1112233
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHH---HHHHHhcCCchHHHHHHHHHH
Q 006898 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA---LCMQWLQDKVYSIRDAAANNL 460 (626)
Q Consensus 398 i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p---~l~~~l~d~~~~VR~~a~~~l 460 (626)
++..+.+..--.+..-....+.-+..+....++..+.....| .+-.++.+++..|-+.|...|
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 444444444334444456667777777777777776654444 355567788888877777554
No 156
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=50.11 E-value=1.6e+02 Score=27.44 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=36.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhhHHHHhhh-chhhH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 006898 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (626)
Q Consensus 360 ~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~~~~--~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~ 426 (626)
+..+.....+.+.+....+++++..++... |-+.+ ....+..+..++.+....+-..+++.+..++.
T Consensus 162 L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~ 231 (339)
T 3dad_A 162 LSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVE 231 (339)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHc
Confidence 444555555666667777777777665541 21111 12344555555555555555556666555544
No 157
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=47.00 E-value=1.1e+02 Score=24.70 Aligned_cols=75 Identities=5% Similarity=-0.045 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhHHHHHHhhCccch----hhhHHH-HHHHhhcCC---chhHHHHHHHHHHHhhcc
Q 006898 162 TELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHL----KTDIMS-IFEDLTQDD---QDSVRLLAVEGCAALGKL 232 (626)
Q Consensus 162 ~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~-~l~~l~~d~---~~~vr~~a~~~l~~l~~~ 232 (626)
.+.+..+.+-+. ..++.+...|+..|..++++.|.... ..+++. .+.+++.+. ...||...+..+...+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 344444555444 35677777788888888888776321 122333 244444432 236888888888888877
Q ss_pred cCch
Q 006898 233 LEPQ 236 (626)
Q Consensus 233 ~~~~ 236 (626)
++..
T Consensus 132 F~~~ 135 (152)
T 3rru_A 132 FPGG 135 (152)
T ss_dssp CSSS
T ss_pred hCCC
Confidence 6653
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.06 E-value=1.5e+02 Score=25.66 Aligned_cols=75 Identities=7% Similarity=-0.021 Sum_probs=50.6
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh----hhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCC
Q 006898 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE 275 (626)
Q Consensus 201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~ 275 (626)
.+.+..+.+-+++.++.+...|+..|..+.+..|... -...++..+..+.. ..+..||..+.+.+...+..++..
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS 120 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 4566677777888999999999999999888876521 11223333333332 456788888888887777766543
No 159
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=44.00 E-value=83 Score=27.77 Aligned_cols=68 Identities=10% Similarity=0.015 Sum_probs=42.5
Q ss_pred HHHHHHhccCCCHHHHHHHHH----HHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhh
Q 006898 321 LPCVKELSSDSSQHVRSALAS----VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (626)
Q Consensus 321 ~~~l~~l~~d~~~~vr~~~~~----~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~ 388 (626)
.+.+.....+++..+|++++. .+..+......+...+.+++.+...+.|++..|+.++..+|..++..
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 445566667777666666665 32332111112344566777777788888888888888888777654
No 160
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=40.42 E-value=2.8e+02 Score=27.38 Aligned_cols=141 Identities=12% Similarity=0.153 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhcCC------ChHHHHHHHHHHHHHHHhhChhhHHHHH-HHHHHHHhcCCchHHHHHHHHHHHHHHHHhC
Q 006898 396 QSLLPAIVELAEDR------HWRVRLAIIEYIPLLASQLGVGFFDDKL-GALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (626)
Q Consensus 396 ~~i~~~l~~~~~~~------~~~~r~~~~~~l~~l~~~~~~~~~~~~l-~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~ 468 (626)
+.+++.+.+.+.++ +|.. .++.+..+...+..+.+.+.+ +..+...+...+..+...+++.+. ....
T Consensus 72 ~~ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~~~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~---~s~p 145 (500)
T 3vld_A 72 KPLLATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPMADFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE---NSQP 145 (500)
T ss_dssp HHHHHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHHSCHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH---TCSS
T ss_pred HHHHHHHHHHHcCCccccccCHHH---HHHHHHHHHhcCCHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc---ccCc
Confidence 56888888887332 3333 677777777766655444322 344667777778888888888876 2223
Q ss_pred hHH-HhhhhHHHHHhhhcCCChH---HHHHHHHHHHHhccccChHH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898 469 PEW-AMQHITPQVLEMINNPHYL---YRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQS 540 (626)
Q Consensus 469 ~~~-~~~~il~~l~~~l~~~~~~---vR~~a~~~l~~i~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 540 (626)
.+. ....++..+.+++-+++.. +-.+.=.+++.+. +.+. ..+..+|.+...=++.++-+-..-...+.-
T Consensus 146 k~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Ls---sdeLirrril~nnl~lL~~vK~~~~~i~~sRLLdll~i 222 (500)
T 3vld_A 146 KGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLS---TDELIRRRLFDNNLPYLVSVKGRMETVSFVRLIDFLTI 222 (500)
T ss_dssp GGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHT---TSHHHHHHHHTTTHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC---chHHHHHHHHHHhHHHHHHHhcCCCceeHHHHHHHHHH
Confidence 332 3467888888888776544 3333333444442 2221 223455555554433343333334444444
Q ss_pred HHhhh
Q 006898 541 LIPIV 545 (626)
Q Consensus 541 i~~~~ 545 (626)
+....
T Consensus 223 l~~~i 227 (500)
T 3vld_A 223 EFQFI 227 (500)
T ss_dssp HHTTC
T ss_pred Hhccc
Confidence 44443
No 161
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=38.84 E-value=2e+02 Score=25.23 Aligned_cols=69 Identities=6% Similarity=-0.007 Sum_probs=50.2
Q ss_pred HHHHHHHhhcCCchhHHHHHHH----HHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006898 203 IMSIFEDLTQDDQDSVRLLAVE----GCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (626)
Q Consensus 203 ll~~l~~l~~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~ 271 (626)
..+.+...+.|++.-+|..++. .+..+......+...+.++..+...+.|+...|+.+...+|..++..
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 5566777888888878877777 44442211113445677888888889999999999999999887764
No 162
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=35.76 E-value=1.7e+02 Score=23.40 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=43.4
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh
Q 006898 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (626)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (626)
.++..+.+.+....|+-+..++..+..+++..|.+ .+.+.+.+.+.......++.+|..+.+.+....+.
T Consensus 43 ~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 43 YFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 45555555555455677777777777777776654 23344445555554555778888888887777633
No 163
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=30.24 E-value=5.4e+02 Score=27.57 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=71.4
Q ss_pred hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhC
Q 006898 199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAVG 273 (626)
Q Consensus 199 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d---~~~~vR~~a~~~l~~l~~~~~ 273 (626)
+...+.|.+...+...+..+...+..++..++-..|. +.+.+.++..+...++. .+++--.++++++..++..+-
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 3455777777888888888888888888888865552 44555566555556655 556655677888888887764
Q ss_pred CC-ccccchHHHHHHhc---CCChHHHHHHHHHhHHHHHHhh
Q 006898 274 PE-PTRMDLVPAYVRLL---RDNEAEVRIAAAGKVTKFCRIL 311 (626)
Q Consensus 274 ~~-~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~ 311 (626)
.. .+..++.+.+..++ .-+|+.=-..+++.+..+...+
T Consensus 416 ~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~i 457 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFI 457 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTS
T ss_pred cCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhc
Confidence 43 33445555554443 3334444445566666665543
No 164
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=28.66 E-value=3.6e+02 Score=25.00 Aligned_cols=9 Identities=11% Similarity=0.113 Sum_probs=4.0
Q ss_pred HhhhCCCCC
Q 006898 519 VINASKDRV 527 (626)
Q Consensus 519 l~~~l~d~~ 527 (626)
+..++.|+.
T Consensus 275 l~~L~~d~~ 283 (333)
T 3bwt_A 275 IQSLLNDSY 283 (333)
T ss_dssp HHHHHTSTT
T ss_pred HHHHHcCCh
Confidence 444444443
No 165
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=26.25 E-value=2.5e+02 Score=22.39 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (626)
Q Consensus 396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~ 464 (626)
+.+...+.+.+....+..+..++-.+..+.+..|..+ |...+.+.+.......+..+|....+.+...-
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 4555666555555667777777777888877776543 22233444444444344556655555555544
No 166
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=24.54 E-value=8.3e+02 Score=27.89 Aligned_cols=341 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred hHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCch--hHHHHHHHHH
Q 006898 149 FHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD--SVRLLAVEGC 226 (626)
Q Consensus 149 l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~--~vr~~a~~~l 226 (626)
+-.+.+.++...+.+++..+-++++|..-. .++..|..+... +..+...++..+.++-=+++- ++|..+++.+
T Consensus 162 i~~vl~vap~~lQ~diI~sLPeIl~ds~H~---~v~~~L~~lL~~--~~~L~~~iLdaLs~L~Ls~~~l~~vr~~vl~~L 236 (1323)
T 3s4w_B 162 MMQLISVAPVNLQHDFITSLPEILGDSQHA---NVGKELGELLVQ--NTSLTVPILDVFSSLRLDPNFLSKIRQLVMGKL 236 (1323)
T ss_dssp HHHHHHHSCTTTHHHHHHTHHHHSCGGGHH---HHHHHHHHHHHH--CSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHST
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHhcchhhH---HHHHHHHHHHhc--CcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q ss_pred HHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh----------------------------CCCccc
Q 006898 227 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV----------------------------GPEPTR 278 (626)
Q Consensus 227 ~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~----------------------------~~~~~~ 278 (626)
.. -+....+.++.++.+..+..+ +.+.+..+-+.+ ..+...
T Consensus 237 ~s-----~~~e~LP~lIkFLL~s~t~~~------~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~ 305 (1323)
T 3s4w_B 237 SS-----VRLEDFPVIVKFLLHSVTDTT------SLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSD 305 (1323)
T ss_dssp TS-----SCTTHHHHHHHHHHHSCSSTT------HHHHHHHHHHHHHCC----------------------------CHH
T ss_pred cc-----CChhhhHHHHHHHHHhCCHhh------HHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccc
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh---------
Q 006898 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL--------- 349 (626)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~--------- 349 (626)
+...-.++..++..- .......+++-+..+......-.+.+==.+.-++-+.+...|..+-+.+..-...
T Consensus 306 ~~~~~lild~lks~l-~~~k~i~eAwlK~I~~~~~~~~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~ 384 (1323)
T 3s4w_B 306 KDCIVLVFDVIKSAI-RYEKTISEAWFKAIERIESAAEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLD 384 (1323)
T ss_dssp HHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHGGGSTTCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHH
T ss_pred cchHHHHHHHHHHHH-hcChHHHHHHHHHHhCCCcccccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHH
Q ss_pred -------hcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 006898 350 -------LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (626)
Q Consensus 350 -------~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~ 422 (626)
.--+.+.+.++...-.++...++.|+.-+......+...+ .....+.++..+.....+.+...-.+++..+.
T Consensus 385 ~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f-d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~ 463 (1323)
T 3s4w_B 385 SAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF-DTYCQQEVVGALVTHVCSGTEAEVDTALDVLL 463 (1323)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q ss_pred HHHHhhChhhHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhhcCCChHHHHHHHHH
Q 006898 423 LLASQLGVGFFD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRA 498 (626)
Q Consensus 423 ~l~~~~~~~~~~-~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~~~~~~vR~~a~~~ 498 (626)
.++......... ..++.-++..+.+-+..=-+.....++.++-.-+.. ...+++.=.+.+.+..++...+...+-+
T Consensus 464 ~L~~~~~~~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIG 543 (1323)
T 3s4w_B 464 ELIVLNASAMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIG 543 (1323)
T ss_dssp HHHHHCHHHHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHhcCHHHHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHH
Q ss_pred HHHhccccC
Q 006898 499 ISLLAPVMG 507 (626)
Q Consensus 499 l~~i~~~~~ 507 (626)
...++..++
T Consensus 544 av~~v~~~~ 552 (1323)
T 3s4w_B 544 AVTMAGIMA 552 (1323)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
No 167
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=24.27 E-value=2.8e+02 Score=22.34 Aligned_cols=95 Identities=9% Similarity=0.081 Sum_probs=52.9
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHhChHHHh----hhhHHH-H
Q 006898 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQ-V 480 (626)
Q Consensus 407 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~-l 480 (626)
.+++|..-...++.+.. . + .-....+..+.+-+.. +++.+...|...|..+++..|..+.. ..++.. +
T Consensus 30 ~~~Dw~~ileicD~In~---~--~-~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L 103 (152)
T 3rru_A 30 QTEDWGQFMHICDIINT---T--Q-DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENL 103 (152)
T ss_dssp CSCCHHHHHHHHHHHHH---S--T-THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTT
T ss_pred CCccHHHHHHHHHHHhC---C--C-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHH
Confidence 34677654444443332 1 1 1123344455555653 57777777888888888888776432 344443 4
Q ss_pred HhhhcCC---ChHHHHHHHHHHHHhccccC
Q 006898 481 LEMINNP---HYLYRMTILRAISLLAPVMG 507 (626)
Q Consensus 481 ~~~l~~~---~~~vR~~a~~~l~~i~~~~~ 507 (626)
.+++.++ ...||..++..+......+.
T Consensus 104 ~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 104 VKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp GGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 4444432 23577777777777665544
No 168
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=23.90 E-value=3e+02 Score=26.12 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=5.5
Q ss_pred hHHHHHHhccCCC
Q 006898 320 ILPCVKELSSDSS 332 (626)
Q Consensus 320 l~~~l~~l~~d~~ 332 (626)
+.+.+..+..|++
T Consensus 137 l~~~~~~L~~d~~ 149 (369)
T 3k49_A 137 LSDSVLQMIKDQN 149 (369)
T ss_dssp GTTCHHHHHHSTT
T ss_pred HHHHHHHHhcCcc
Confidence 3344444444443
No 169
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=21.80 E-value=2.8e+02 Score=21.46 Aligned_cols=127 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh
Q 006898 429 GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 508 (626)
Q Consensus 429 ~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~ 508 (626)
|..-+.+.-+.-.+.-++.+...++..+.+++...-.. ..+...+.+.+.......|...+..+..+++.+..
T Consensus 1 ~~~~~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a-------~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~ 73 (132)
T 4flb_A 1 GSAGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHH-------STIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKR 73 (132)
T ss_dssp -CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHTGGGH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCchHHHHHHHHHHHHCcccHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcc
Q ss_pred H---HhhhcHHHHHhhhCCCC-CchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCC
Q 006898 509 E---ITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVN 566 (626)
Q Consensus 509 ~---~~~~~~l~~l~~~l~d~-~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~ 566 (626)
. .+...+.+.+......- ++..|....+.+.-.-.. ..+.+.++..|. ..++.+
T Consensus 74 ~~~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~ll~iW~~r---~vf~~~~i~~L~-~~L~~s 131 (132)
T 4flb_A 74 KNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIWEDR---NVYPEEMIVALR-EALSTT 131 (132)
T ss_dssp TTCTHHHHHHHTTHHHHHHTTCSTTTHHHHHHHHHHHHHH---TSSCHHHHHHHH-HHHTSC
T ss_pred cChHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC---CCcCHHHHHHHH-HHHhcc
No 170
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=20.26 E-value=6.4e+02 Score=24.95 Aligned_cols=185 Identities=9% Similarity=0.044 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCCC--HHHHHHHHHhHHHHHHhhCccc-hhhhHHHHHHHhhcCC-c-hhH-HHHHHHHHHHhhcccCc
Q 006898 162 TELRSIYTQLCQDDM--PMVRRSAASNLGKFAATVEPAH-LKTDIMSIFEDLTQDD-Q-DSV-RLLAVEGCAALGKLLEP 235 (626)
Q Consensus 162 ~~l~~~l~~l~~d~~--~~vR~~a~~~l~~l~~~~~~~~-~~~~ll~~l~~l~~d~-~-~~v-r~~a~~~l~~l~~~~~~ 235 (626)
+++++.+...++... +.+-...-++.-.+.....-+. ....+++.+.+.+.++ + ..+ -...+..+..+....+-
T Consensus 30 ~~ll~~L~t~~e~~~~p~~in~Lie~~~LnL~~~t~~~~~~~~~ll~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~F 109 (500)
T 3vld_A 30 ENLLTQLENELNEDNLPEDINTLLRKCSLNLVTVVSLPDMDVKPLLATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMADF 109 (500)
T ss_dssp HHHHHHHHHHHHTSSCCTTHHHHHHHHHHHHHHSCSCCSCCCHHHHHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHhhhccCCCCchhHHHHHHHhhcchhcccCCcccHHHHHHHHHHHHcCCccccccCHHHHHHHHHHHHhcCCH
Confidence 445555555433332 3333333333334433333222 4457888888887333 1 100 11267777777777765
Q ss_pred hhhhhh-hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh
Q 006898 236 QDCVAH-ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (626)
Q Consensus 236 ~~~~~~-i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (626)
+.+.+. =+..+...+.+....+-..+++.+. ...++..+ ...++..+++++-|++..+- ..+.++..+...+..
T Consensus 110 d~VLevysve~i~~aL~S~~~~l~~~~ckVI~---~s~pk~lfa~t~iidiLL~lyFd~~t~i~-~vvn~IE~~~~~Lss 185 (500)
T 3vld_A 110 DDVLEVYSAEDLVKALRSEIDPLKVAACRVIE---NSQPKGLFATSNIIDILLDILFDEKVEND-KLITAIEKALERLST 185 (500)
T ss_dssp HHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH---TCSSGGGGTTSSHHHHHHHHHTCTTCCCH-HHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc---ccCchhHhccChHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHcCc
Confidence 443332 2445566667677777777777765 22222222 34688888888877653320 023333333332222
Q ss_pred H-----HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh
Q 006898 314 E-----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350 (626)
Q Consensus 314 ~-----~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~ 350 (626)
. .+.+..+|.+.+.-++.+.-+..-....+..+....
T Consensus 186 deLirrril~nnl~lL~~vK~~~~~i~~sRLLdll~il~~~i 227 (500)
T 3vld_A 186 DELIRRRLFDNNLPYLVSVKGRMETVSFVRLIDFLTIEFQFI 227 (500)
T ss_dssp SHHHHHHHHTTTHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhHHHHHHHhcCCCceeHHHHHHHHHHHhccc
Confidence 2 223455677766655555544444555555444443
Done!