BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006900
(626 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NUW8|TYDP1_HUMAN Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens GN=TDP1 PE=1 SV=2
Length = 608
Score = 271 bits (694), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 193/575 (33%), Positives = 289/575 (50%), Gaps = 82/575 (14%)
Query: 78 QRKKLSSNEHV----SIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGAT-----NGELS 128
+R+K S E + S +D ++ +P K V NDG +G +
Sbjct: 75 KRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPNDGTAQRTENHGAPA 134
Query: 129 SKKMRQQDEQDNENGKNSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQ 188
++++++++ +G+ + + + P F L RV G+ N+ + I+D++
Sbjct: 135 CHRLKEEEDEYETSGEGQD----IWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILS 190
Query: 189 ---GDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHM-KRNKP-ANWIL 243
G ++ + NY D+DWL+ P + +L++HG+ H+ + KP N L
Sbjct: 191 PLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISL 250
Query: 244 HKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNN 301
+ L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D +
Sbjct: 251 CQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTH 310
Query: 302 LSEE--CGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPG 359
S E F+ DLI YL P + K + S V LI S PG
Sbjct: 311 KSGESPTHFKADLISYLMAYNAPSLKEWI----------DVIHKHDLSETNVYLIGSTPG 360
Query: 360 YHTGSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL---DEKWM-AELSSSM 414
GS WGH +L+ +L++ +S P+V QFSS+GSL + KW+ +E SM
Sbjct: 361 RFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESM 420
Query: 415 SSGFSEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIP-SPQKNVDKDFLKKYWAKW 472
+ E KTP PL +++P+VE+VR SLEGY AG ++P S Q +++L Y+ KW
Sbjct: 421 LTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKW 480
Query: 473 KASHTGRSRAMPHIKTFAR------------YNGQKLAKAAWGALQKNNSQLMIRSYELG 520
A +GRS AMPHIKT+ R L+KAAWGAL+KN +QLMIRSYELG
Sbjct: 481 SAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELG 540
Query: 521 VLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVVYL 580
VL LPSA F S V + +GS E +
Sbjct: 541 VLFLPSA------FGLDSFKVKQKFFAGSQEP------------------------MATF 570
Query: 581 PVPYELPPQRYSSEDVPWSWDKRYTKK-DVYGQVW 614
PVPY+LPP+ Y S+D PW W+ Y K D +G +W
Sbjct: 571 PVPYDLPPELYGSKDRPWIWNIPYVKAPDTHGNMW 605
>sp|Q8BJ37|TYDP1_MOUSE Tyrosyl-DNA phosphodiesterase 1 OS=Mus musculus GN=Tdp1 PE=2 SV=2
Length = 609
Score = 262 bits (670), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 175/485 (36%), Positives = 251/485 (51%), Gaps = 73/485 (15%)
Query: 161 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 217
P F L RV G+ A N+ + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 164 PFQFYLTRVSGIKAKYNSKALHIKDILSPLFGTLVSSAQFNYCFDVDWLIKQYPPEFRKN 223
Query: 218 HVLVIHG---ESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHT 274
+L++HG E+ L H + AN L + L I+FGTHH+K MLL+Y G+R+++HT
Sbjct: 224 PILLVHGDKREAKADL-HAQAKPYANISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHT 282
Query: 275 ANLIHVDWNNKSQGLWMQD-FPLKDQNNLS---EECGFENDLIDYLSTLKWPEFSANLPA 330
+NLI DW+ K+QG+W+ +P DQ + + F+ DL YL+ P +
Sbjct: 283 SNLIREDWHQKTQGIWLSPLYPRIDQGSHTAGESSTRFKADLTSYLTAYNAPPLQEWI-- 340
Query: 331 HGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQ--ECTFEKGFK 388
++ + S V LI S PG GS WGH +LR +LQ + KG +
Sbjct: 341 --------DIIQEHDLSETNVYLIGSTPGRFQGSHRDNWGHFRLRKLLQAHAPSTPKG-E 391
Query: 389 KSPLVYQFSSLGSL---DEKWM-AELSSSMSSGFSEDKTPLGIGEPL-IVWPTVEDVRCS 443
P+V QFSS+GSL + KW+ +E S+ + E + P PL +++P+VE+VR S
Sbjct: 392 CWPIVGQFSSIGSLGPDESKWLCSEFKDSLLALREEGRPPGKSAVPLHLIYPSVENVRTS 451
Query: 444 LEGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFAR----------- 491
LEGY AG ++P + +K +L Y+ KW A +GRS AMPHIKT+ R
Sbjct: 452 LEGYPAGGSLPYSIQTAEKQRWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKLAWF 511
Query: 492 -YNGQKLAKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGST 550
L+KAAWGAL+KN +QLMIRSYELGVL LPSA F + V + S S
Sbjct: 512 LVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSA------FGLDTFKVKQKFFSSSC 565
Query: 551 ETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSEDVPWSWDKRYTKK-DV 609
E + PVPY+LPP+ Y S+D PW W+ Y K D
Sbjct: 566 EPT------------------------ASFPVPYDLPPELYRSKDRPWIWNIPYVKAPDT 601
Query: 610 YGQVW 614
+G +W
Sbjct: 602 HGNMW 606
>sp|Q4G056|TYDP1_RAT Tyrosyl-DNA phosphodiesterase 1 OS=Rattus norvegicus GN=Tdp1 PE=2
SV=1
Length = 609
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 173/484 (35%), Positives = 248/484 (51%), Gaps = 71/484 (14%)
Query: 161 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 217
P F L RV G+ A N+ + I+D++ G ++ + NY D++WL+ P +
Sbjct: 164 PFQFYLTRVSGIKAKYNSKALHIKDILSPLFGTLVSSAQFNYCFDVNWLIKQYPPEFRKK 223
Query: 218 HVLVIHG---ESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHT 274
+L++HG E+ L H + AN L + L I+FGTHH+K MLL+Y G+R+++HT
Sbjct: 224 PILLVHGDKREAKADL-HAQAKPYANISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHT 282
Query: 275 ANLIHVDWNNKSQGLWMQD-FPLKDQNNLS---EECGFENDLIDYLSTLKWPEFSANLPA 330
+NLI DW+ K+QG+W+ +P Q N + F+ DL YL P +
Sbjct: 283 SNLIREDWHQKTQGIWLSPLYPRIYQGNHTSGESSTHFKADLTSYLMAYNAPPLQEWI-- 340
Query: 331 HGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS 390
++ + S V LI S PG GS WGH +LR +LQ +
Sbjct: 341 --------DIIQEHDLSETNVYLIGSTPGRFQGSHKDNWGHFRLRKLLQAHAPSAPRGEC 392
Query: 391 -PLVYQFSSLGSL---DEKWM-AELSSSMSSGFSEDKTPLGIGEPL-IVWPTVEDVRCSL 444
P+V QFSS+GSL + KW+ +E S+ + E +TP PL +++P+VE+VR SL
Sbjct: 393 WPVVGQFSSIGSLGPDESKWLCSEFKESLLAVREEGRTPGRSAVPLHLIYPSVENVRTSL 452
Query: 445 EGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFAR------------ 491
EGY AG ++P + +K +L Y+ KW A +GRS AMPHIKT+ R
Sbjct: 453 EGYPAGGSLPYGIQTAEKQRWLHPYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKLAWFL 512
Query: 492 YNGQKLAKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTE 551
L+KAAWGAL+KN +QLMIRSYELGVL LPSA F + V + S S+E
Sbjct: 513 VTSANLSKAAWGALEKNGAQLMIRSYELGVLFLPSA------FGLDTFKVKQKFFSSSSE 566
Query: 552 TSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSEDVPWSWDKRYTKK-DVY 610
+ PVPY+LPP+ Y S+D PW W+ Y K D +
Sbjct: 567 P------------------------MASFPVPYDLPPELYGSKDRPWIWNIPYVKAPDTH 602
Query: 611 GQVW 614
G +W
Sbjct: 603 GNMW 606
>sp|Q9VQM4|TYDP1_DROME Probable tyrosyl-DNA phosphodiesterase OS=Drosophila melanogaster
GN=gkt PE=2 SV=1
Length = 580
Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 122/374 (32%), Positives = 180/374 (48%), Gaps = 45/374 (12%)
Query: 183 IRDVIQGDIIVAILSNYMVDIDWLLPA---CPVLAKIPHVLVIHGESDGTLEHMKRNKPA 239
I D G+I + N+MVDI WLL +L K P +L+ ES L K +
Sbjct: 175 ILDESLGEIESTVQINFMVDIGWLLGHYYFAGILDK-PLLLLYGDESPELLSIGKFKQQV 233
Query: 240 NWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQD----F 294
I K P P F T H+K M L Y G +R+++ TANL DW+N++QGLW+
Sbjct: 234 TAIRVKMPTP--FATSHTKMMFLGYSDGSMRVVISTANLYEDDWHNRTQGLWISPKLPAL 291
Query: 295 PLKDQNNLSEE-CGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRL 353
P+ E GF+ DL+ YL K + + + + +FS+ V
Sbjct: 292 PVDADTGAGESLTGFKQDLMLYLVEYKISQLQPWI----------ARIRNSDFSAINVFF 341
Query: 354 IASVPGYHTGSSLK--KWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELS 411
+ SVPG H S++ WGH +L ++L + + P+V Q SS+GSL A +
Sbjct: 342 LGSVPGGHREGSVRGHPWGHARLASLLAKHAAPID-DRIPVVCQSSSIGSLGANVQAWIQ 400
Query: 412 SSMSSGFSEDKTPLGIGEPL----IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKD-FLK 466
+ +D TP+G + +++P+ +V S +G G +P + DK +LK
Sbjct: 401 QDFVNSLKKDSTPVGKLRQMPPFKMIYPSYGNVAGSHDGMLGGGCLPYGKNTNDKQPWLK 460
Query: 467 KYWAKWKASHTGRSRAMPHIKTFARYN------------GQKLAKAAWGALQKNNS---Q 511
Y +WK+S RSRAMPHIK++ R+N L+KAAWG KN++
Sbjct: 461 DYLQQWKSSDRFRSRAMPHIKSYTRFNLEDQSVYWFVLTSANLSKAAWGCFNKNSNIQPC 520
Query: 512 LMIRSYELGVLILP 525
L I +YE GVL LP
Sbjct: 521 LRIANYEAGVLFLP 534
>sp|Q9TXV7|TYDP1_CAEEL Probable tyrosyl-DNA phosphodiesterase OS=Caenorhabditis elegans
GN=F52C12.1 PE=3 SV=1
Length = 451
Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 130/458 (28%), Positives = 208/458 (45%), Gaps = 95/458 (20%)
Query: 185 DVIQGDI--IVAILSNYMVDIDWLLPACP-VLAKIPHVLVIHGESDGTLEHMKRNKPANW 241
D I DI I ++ ++M+D ++L+ + P L + P LV+ L +N+
Sbjct: 58 DEILADIRPINSLHFSFMLDFEFLIGSYPPSLREYPITLVVGAPDAPDLLKCTKNQKLVT 117
Query: 242 ILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQN 300
++ LPI FGTHH+K +L G +IV TANL+ DW K+Q + +F +K +
Sbjct: 118 VVGAS-LPIPFGTHHTKMSILEDEDGRFHVIVSTANLVPDDWEFKTQQFYY-NFGVKIAS 175
Query: 301 NLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGY 360
F++DL++YLS + +K +FS + RLI S PGY
Sbjct: 176 GTVPRSDFQDDLLEYLSMYR-----------NQLDTWKQLLQKVDFSQISDRLIFSTPGY 224
Query: 361 HTGSSLKKWGHMKLRTVLQE-CTFEKGF---KKSPLVYQFSSLGSLDE---KWMAE--LS 411
HT ++ GH +L +L E F+ + ++ V Q SS+GSL W L
Sbjct: 225 HTDPPTQRPGHPRLFRILSEKFPFDASYEHTERCTFVAQCSSIGSLGSAPINWFRGQFLQ 284
Query: 412 SSMSSGFSEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQK-NVDKDFLKKYWA 470
S + S + P + +V+P+VEDVR S +GYA G ++P + + +L+
Sbjct: 285 SLEGANPSPKQKPAKM---YLVFPSVEDVRTSCQGYAGGCSVPYRNSVHARQKWLQGNMC 341
Query: 471 KWKASHTGRSRAMPHIKTFARYNGQ----------KLAKAAWGAL----QKNNSQLMIRS 516
KW+++ R+ A+PH KT+ +Y+ + L+KAAWG + KN QLMIRS
Sbjct: 342 KWRSNAKRRTNAVPHCKTYVKYDKKVAIWQLLTSANLSKAAWGEVSFNKSKNVEQLMIRS 401
Query: 517 YELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSE 576
+E+GVLI T+ S+
Sbjct: 402 WEMGVLI--------------------------TDPSRFN-------------------- 415
Query: 577 VVYLPVPYELPPQRYSSEDVPWSWDKRYTKKDVYGQVW 614
+P++ P YS+ D P+ DK++ K D+ G +W
Sbjct: 416 -----IPFDYPLVPYSATDEPFVTDKKHEKPDILGCIW 448
>sp|Q9USG9|TYDP1_SCHPO Probable tyrosyl-DNA phosphodiesterase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCP31B10.05 PE=3 SV=1
Length = 536
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 133/544 (24%), Positives = 216/544 (39%), Gaps = 110/544 (20%)
Query: 156 SRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILS-NYMVDIDWLLPAC---- 210
S + + S L ++ LP N C+ ++ +I + N+ VD+++LL
Sbjct: 16 SNEIIDSPIFLNKISALPESENVHCLLLKQLIGSPQLKQTWQFNFCVDLNFLLENMHASV 75
Query: 211 --PVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPR-G 267
V +I H +S L + P N L+ +P+ +GTHHSK M+ +
Sbjct: 76 FPTVDVRITHGYDSKSDSLARLTAQMNHCPVNVKLYSVYVPM-WGTHHSKIMVNFFKDDS 134
Query: 268 VRIIVHTANLIHVDWNNKSQGLWMQ------------------------------DFPLK 297
+I++HTANL+ DW SQ ++ +K
Sbjct: 135 CQIVIHTANLVEPDWIGMSQAIFKTPLLYPKANDSLSTSSVPEYGNPSKIRKHEGSLDIK 194
Query: 298 DQNN---LSEECGFEN----------DLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKF 344
D N + + FEN D + + +F A L + + K +
Sbjct: 195 DDRNCDIIDVDSAFENFKHKSDTRSSDDLGVIGRQFQQDFLAYLKNYRHTYELIEKLKMY 254
Query: 345 NFSSAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKSP---------LVYQ 395
+FS+ I SVPG G WG KL+ +L+ EK KK + Q
Sbjct: 255 DFSAIRAIFIGSVPGKFEGEEESSWGLGKLKKILK--MLEKDSKKDEKTKFEESDICISQ 312
Query: 396 FSSLGSLDEKWMAELSSSMSSGFSEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAI-- 453
SS+GS K E + ++ GF + G ++PTV++V+ S+ G+ +G++I
Sbjct: 313 CSSMGSFGPK--QEYIAELTDGFGCQR-----GNWKFLFPTVKEVQQSMLGWQSGSSIHF 365
Query: 454 ----PSPQKNVDKDFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ------------KL 497
+ V+ K KW A GR R PHIKT+ R++ L
Sbjct: 366 NILGKTAASQVETLKKGKNLCKWVAMKAGRQRVAPHIKTYMRFSNDGELLRWVLVTSANL 425
Query: 498 AKAAWGALQKNNSQ------LMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTE 551
+K AWG L+ + ++ L IRSYE GVL+ P C I+ K+ +
Sbjct: 426 SKPAWGTLEGHKAKSRSTRGLRIRSYEAGVLLYPKLFEESQRAPC---IMTPTYKTNTPN 482
Query: 552 TSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSEDVPWSWDKRYTKKDVYG 611
+ ++ ++G V+ + + ++ PP Y +D WS T KD G
Sbjct: 483 LDEKRR------EFYG-------KRVIGVRMCWDFPPVEYEDKDEIWSPVINRTDKDWLG 529
Query: 612 QVWP 615
VWP
Sbjct: 530 YVWP 533
>sp|Q8IW19|APLF_HUMAN Aprataxin and PNK-like factor OS=Homo sapiens GN=APLF PE=1 SV=1
Length = 511
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 23 PKLPLSQGPNVIGRTNI-PVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRK- 80
P++ L+ G VIGR + ++DKR+SR+H L A G + TNP +S ++ +
Sbjct: 14 PRVALAPGETVIGRGPLLGITDKRVSRRHAILEV-AGGQLRIKPIHTNPCFYQSSEKSQL 72
Query: 81 -KLSSNEHVSIADGDIIELIPGHHFFKYVTL 110
L N + GD L+ + F+ +++
Sbjct: 73 LPLKPNLWCYLNPGDSFSLLVDKYIFRILSI 103
>sp|Q9V677|ECM29_DROME Proteasome-associated protein ECM29 homolog OS=Drosophila
melanogaster GN=CG8858 PE=1 SV=1
Length = 1890
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 31 PNVIGRTNIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRKKLSSNE---- 86
PNV +P D + +T S D S LV+ G +++S R+K+ +
Sbjct: 814 PNVPVEIQVPSKDGDDDDEEMTEYTSIDSSTKLVIFGVVFQLLRSSSARQKIREDSARCL 873
Query: 87 -HVSIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGATNGELSSKKMRQQDEQDNENGKN 145
+++I DG E + K++TL++ QK D A N +S + D G+
Sbjct: 874 GYLAIGDG---EHFTKRNLDKFLTLTKIQK----DAALNIAISEAIVNTLCGYDVNKGQ- 925
Query: 146 SEEALCNFHVSRDK----LPSTFRLL 167
+E N H + D L S RL+
Sbjct: 926 PDEKFVNKHCNDDDFDQFLNSLIRLV 951
>sp|Q9D842|APLF_MOUSE Aprataxin and PNK-like factor OS=Mus musculus GN=Aplf PE=2 SV=2
Length = 499
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 8 YLVPLDNNLREDNSLPKLPLSQGPNVIGRTN-IPVSDKRLSRKHITL 53
+L PLD P++P+ G VIGR + ++DKR+SR+H L
Sbjct: 6 FLQPLDGG-------PRVPVGPGQTVIGRGPLLGITDKRVSRRHAIL 45
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 248,652,366
Number of Sequences: 539616
Number of extensions: 10890804
Number of successful extensions: 24632
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 24584
Number of HSP's gapped (non-prelim): 14
length of query: 626
length of database: 191,569,459
effective HSP length: 124
effective length of query: 502
effective length of database: 124,657,075
effective search space: 62577851650
effective search space used: 62577851650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)