Query 006900
Match_columns 626
No_of_seqs 195 out of 340
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:55:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jy1_A TDP1, tyrosyl-DNA phosp 100.0 3E-108 9E-113 901.6 26.8 431 145-616 3-463 (464)
2 1q32_A TDP1P;, tyrosyl-DNA pho 100.0 9.9E-95 3.4E-99 802.3 14.8 394 159-606 77-543 (544)
3 3sq7_A Tyrosyl-DNA phosphodies 100.0 2.8E-93 9.7E-98 778.2 20.3 392 162-605 3-466 (470)
4 2brf_A Bifunctional polynucleo 99.6 1.4E-15 4.8E-20 136.0 8.1 96 4-109 7-106 (110)
5 1yj5_C 5' polynucleotide kinas 99.6 3E-15 1E-19 138.6 8.4 97 4-110 7-107 (143)
6 1ujx_A Polynucleotide kinase 3 99.5 8.2E-15 2.8E-19 132.6 8.0 97 4-110 14-114 (119)
7 3kt9_A Aprataxin; FHA domain, 99.3 1.6E-12 5.6E-17 114.9 8.2 95 5-109 3-100 (102)
8 1lgp_A Cell cycle checkpoint p 97.7 4.6E-05 1.6E-09 68.0 6.0 90 4-101 2-96 (116)
9 1g6g_A Protein kinase RAD53; b 96.9 0.00093 3.2E-08 60.6 5.8 88 5-102 4-108 (127)
10 1gxc_A CHK2, CDS1, serine/thre 96.7 0.0026 8.9E-08 59.3 7.0 96 5-110 29-141 (149)
11 3va4_A Mediator of DNA damage 96.7 0.0021 7.2E-08 59.0 5.8 98 4-108 22-124 (132)
12 2jqj_A DNA damage response pro 96.5 0.0016 5.6E-08 60.7 3.9 97 4-110 16-124 (151)
13 1dmz_A Protein (protein kinase 96.4 0.0051 1.8E-07 57.9 7.1 97 6-110 5-123 (158)
14 2xt9_B Putative signal transdu 96.2 0.0049 1.7E-07 54.8 5.2 79 22-110 23-105 (115)
15 2jpe_A Nuclear inhibitor of pr 96.1 0.0077 2.6E-07 55.4 6.1 79 23-105 47-132 (140)
16 3po8_A RV0020C protein, putati 96.0 0.0072 2.4E-07 52.2 5.4 77 21-105 14-94 (100)
17 3fm8_A Kinesin-like protein KI 95.9 0.014 4.8E-07 53.0 7.0 93 6-107 26-121 (124)
18 1uht_A Expressed protein; FHA 95.9 0.0085 2.9E-07 53.3 5.4 88 6-102 12-105 (118)
19 2kb3_A Oxoglutarate dehydrogen 95.8 0.0077 2.6E-07 55.9 4.8 79 22-110 58-140 (143)
20 3oun_A Putative uncharacterize 95.7 0.0084 2.9E-07 56.7 4.8 73 20-99 75-150 (157)
21 2pie_A E3 ubiquitin-protein li 95.7 0.034 1.2E-06 50.9 8.5 95 6-110 9-117 (138)
22 1qu5_A Protein kinase SPK1; FH 95.6 0.016 5.5E-07 55.9 6.1 96 6-109 29-146 (182)
23 2kfu_A RV1827 PThr 22; FHA dom 95.4 0.016 5.6E-07 54.9 5.6 78 23-110 68-149 (162)
24 1r21_A Antigen KI-67; beta san 95.4 0.012 4.1E-07 53.1 4.3 94 5-110 11-108 (128)
25 1wln_A Afadin; beta sandwich, 95.1 0.044 1.5E-06 48.9 7.2 97 4-108 9-112 (120)
26 3hx1_A SLR1951 protein; P74513 95.1 0.026 9E-07 51.4 5.8 86 23-116 23-121 (131)
27 2csw_A Ubiquitin ligase protei 95.1 0.031 1.1E-06 51.6 6.4 74 23-100 28-110 (145)
28 3gqs_A Adenylate cyclase-like 95.1 0.027 9.3E-07 49.1 5.5 78 23-108 17-100 (106)
29 1g3g_A Protien kinase SPK1; FH 94.9 0.022 7.6E-07 53.8 4.9 88 6-101 33-135 (164)
30 1mzk_A Kinase associated prote 94.5 0.044 1.5E-06 50.2 5.5 81 24-110 21-119 (139)
31 4ejq_A Kinesin-like protein KI 94.3 0.053 1.8E-06 50.8 5.7 96 6-109 38-143 (154)
32 2ff4_A Probable regulatory pro 93.6 0.058 2E-06 57.4 5.2 79 23-109 299-380 (388)
33 3els_A PRE-mRNA leakage protei 93.3 0.045 1.5E-06 51.6 3.3 89 9-101 34-145 (158)
34 4h87_A Kanadaptin; FHA domain 92.9 0.085 2.9E-06 48.0 4.4 83 22-110 32-129 (130)
35 4egx_A Kinesin-like protein KI 92.5 0.24 8.2E-06 47.7 7.3 97 5-109 67-173 (184)
36 3i6u_A CDS1, serine/threonine- 92.0 0.14 4.7E-06 54.4 5.3 86 5-100 9-110 (419)
37 3elv_A PRE-mRNA leakage protei 90.0 0.34 1.1E-05 47.6 5.4 90 9-102 81-193 (205)
38 4a0e_A YSCD, type III secretio 78.6 1.3 4.4E-05 40.1 3.2 49 24-74 18-70 (123)
39 1byr_A Protein (endonuclease); 73.4 2.8 9.7E-05 37.6 4.1 40 251-293 89-129 (155)
40 3huf_A DNA repair and telomere 48.2 5.8 0.0002 41.4 1.4 33 24-56 15-53 (325)
41 4ggj_A Mitochondrial cardiolip 46.5 13 0.00044 35.4 3.5 40 251-293 119-159 (196)
42 3uv0_A Mutator 2, isoform B; F 40.2 20 0.00067 31.4 3.2 66 22-96 12-82 (102)
43 1v0w_A Phospholipase D; hydrol 40.2 22 0.00077 38.6 4.6 37 252-293 436-472 (506)
44 3hsi_A Phosphatidylserine synt 25.3 36 0.0012 36.9 3.0 40 251-293 359-399 (458)
45 2c1l_A Restriction endonucleas 20.9 65 0.0022 32.7 3.6 39 251-292 100-138 (358)
No 1
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=100.00 E-value=2.6e-108 Score=901.61 Aligned_cols=431 Identities=39% Similarity=0.729 Sum_probs=360.3
Q ss_pred CCcccccccccCCCCCCCceEEEEecCCCCCCCCCceeechhccc---cHhhhhhhhcccCHhhhhccCCC-CCCCCeEE
Q 006900 145 NSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQG---DIIVAILSNYMVDIDWLLPACPV-LAKIPHVL 220 (626)
Q Consensus 145 ~~~~~~~~~~~~~~~~~s~FrL~rv~g~~~~~n~~~Itl~Dll~~---~L~~avl~nF~~Dl~WLl~~~p~-~~~~~~i~ 220 (626)
..+|.++.|+......|.+|+||+|+|++.++|.++|||+|||++ +|++|++||||+|++|||++|+. ++++| |+
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~~l~~i~~~~~~~n~~~itl~diL~~~~g~l~~a~~~nf~~D~~WLl~~~~~~~~~~~-v~ 81 (464)
T 1jy1_A 3 DPGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKP-IL 81 (464)
T ss_dssp CTTTTCCGGGTSCTTCSSCEEEBCCTTSCGGGGTTCBCHHHHTSGGGCCEEEEEEECSCBCHHHHHHHSCGGGTTSC-EE
T ss_pred CcccccchhhhhcccCCceEEEEeecCCCcccCCCceeHHHHhCCccccHHHHHhHHhHHhHHHHHhhCcccccCCc-EE
Confidence 456778999999888888999999999998899999999999984 69999999999999999999973 56665 88
Q ss_pred EEeCCCCchhhhh--hhcCCCceEEecCCCCCCCCCccceeEEEEeCCceEEEEeCCCCCccccccccceEEeec-cCCC
Q 006900 221 VIHGESDGTLEHM--KRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FPLK 297 (626)
Q Consensus 221 Vv~ge~~~~~~~~--~~~~~~n~~l~~p~mp~~fGthHSKmmLL~y~dglRVVI~TANLi~~DW~~~tQ~vW~qD-fP~~ 297 (626)
||||+++.....+ .....+||++|+|+||++|||||||||||+|+||||||||||||+++||+++||+||+|| ||++
T Consensus 82 iv~g~~~~~~~~l~~~~~~~~nv~~~~p~mp~~fGthHsKmmiL~y~~glRVVI~TANL~~~DW~~~tQ~vW~sd~lP~~ 161 (464)
T 1jy1_A 82 LVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRI 161 (464)
T ss_dssp EEECCCHHHHHHHHHHHTTCTTEEEEECCCCSTTCCBCCCEEEEEESSCEEEEEECCCBSGGGGTSSBCEEEECCCBCBC
T ss_pred EEeCCCcccchhhHHhhccCCCeEEEeCCCCCcccccchhhheeecCCceEEEEeCCCCChhHhccccceEEecccCcCC
Confidence 8899865432222 223567999999999999999999999999999999999999999999999999999999 7987
Q ss_pred CCCC---CCCCCCcHHHHHHHHHhcCCCccccCCCCCCCccccccccccccccccceEEEEecCCCccCCCcccccHHHH
Q 006900 298 DQNN---LSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKL 374 (626)
Q Consensus 298 ~~~s---~~~~t~Fk~dL~~YL~ay~~~~~~~~~p~~g~~~i~~~~L~~yDFS~a~v~LVaSVPG~H~g~~~~~~G~~rL 374 (626)
...+ .+++++|++||++||++|+.+.... +++.|++||||.++|+||+||||+|.|.+..+|||++|
T Consensus 162 ~~~~~~~~~~~~~Fk~dL~~yL~ay~~~~~~~----------~i~~L~~~DFS~~~v~LVaSvPG~h~~~~~~~~G~~~L 231 (464)
T 1jy1_A 162 ADGTHKSGESPTHFKANLISYLTAYNAPSLKE----------WIDVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRL 231 (464)
T ss_dssp CTTCCCCCCCTTCHHHHHHHHHHTTCCGGGHH----------HHHHHHTBCCTTCCSEEEEECSEEEEGGGGGGSHHHHH
T ss_pred CccccccCCCCCchHHHHHHHHHHhCCchhHH----------HHHHHHhcCCcccCcEEEEeCCcCCcCCcchhhhHHHH
Confidence 5433 3688999999999999999764321 25889999999999999999999999998999999999
Q ss_pred HHHHhhccccC-CCccCCeEEEecCCCcCc---hHHH-HHHHHhccCCCCCCCCC-CCCCCceEeccCchhhhcCccCCc
Q 006900 375 RTVLQECTFEK-GFKKSPLVYQFSSLGSLD---EKWM-AELSSSMSSGFSEDKTP-LGIGEPLIVWPTVEDVRCSLEGYA 448 (626)
Q Consensus 375 ~~vL~~~~~~~-~~~~~~i~~Q~SSIGsl~---~~wL-~ef~~sl~~~~~~~~~p-~~~~~~~IIfPTveeVr~S~~G~~ 448 (626)
+++|+++++.. ..+.++|+||+||||+|+ .+|| ++|+.+|++...+.+.+ ...++++|||||+||||+|.+||.
T Consensus 232 ~~~L~~~~~~~~~~~~~~i~~Q~SSIGslg~~~~~Wl~~~f~~sl~~~~~~~~~~~~~~~~~~iifPT~e~Vr~S~~G~~ 311 (464)
T 1jy1_A 232 KKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYP 311 (464)
T ss_dssp HHHHHHHC-----CCSCCEEEECSCBCCCCSSTTTTTTTTHHHHHTCCC---------CCCEEEECCBHHHHHTSSSCGG
T ss_pred HHHHHHhccCCCccCCCcEEEEeecccccCcchhHHHHHHHHHHhhhhcccccccccCCCceEEEcCCHHHHHhcccccC
Confidence 99999987642 225789999999999997 5899 68999998753222211 124679999999999999999999
Q ss_pred CCccccCCCccch-hhHHHHHhhhhccCCCCCCCCCCceeEEEeeC------------cccchHHhhcccccCCceeEec
Q 006900 449 AGNAIPSPQKNVD-KDFLKKYWAKWKASHTGRSRAMPHIKTFARYN------------GQKLAKAAWGALQKNNSQLMIR 515 (626)
Q Consensus 449 ~Ggsi~~~~~~~~-k~~l~~~~~kw~~~~~gR~~a~PHiKty~r~~------------s~NLSkaAWG~l~k~~sql~Ir 515 (626)
+|||||++.++++ +.|+++|||+|+++.+||+++|||||||+|++ |||||+||||+++++++||+||
T Consensus 312 ~ggsi~~~~~~~~~~~~l~~~l~~w~~~~~~R~~a~pHiKty~r~~~~~~~~~W~lltSaNLSkaAWG~~~k~~~~l~I~ 391 (464)
T 1jy1_A 312 AGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIR 391 (464)
T ss_dssp GGGGSCCCHHHHTTCGGGGGGEECCCCGGGTCTTSCBCCEEEEEECTTSSEEEEEEEESCCBSHHHHCEEETTTTEEEEC
T ss_pred CcceeeccchhhhhhhhhHHHHHHhccCccCCCCcCCceeeEEecCCCCCeecEEEEccccCCHHHhCccccCCCceeEe
Confidence 9999999865543 46999999999999999999999999999974 7999999999999999999999
Q ss_pred eeeeEEEEcCCcccCCCccccccCCCCCccccCCccchhcccceeeeeeccCCCCCCCCCccccccccCCCCCCCCCCCC
Q 006900 516 SYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSED 595 (626)
Q Consensus 516 nYElGVL~~P~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvPy~LP~~~Y~~~D 595 (626)
||||||||+|..+... .|++.. +.++ . .....+.|||||++|++||+.+|
T Consensus 392 nyElGVl~~P~~~~~~-~~~~~~--------------------~~~~----~-----~~~~~~~~~vPy~lP~~~Y~~~D 441 (464)
T 1jy1_A 392 SYELGVLFLPSALGLD-SFKVKQ--------------------KFFA----G-----SQEPMATFPVPYDLPPELYGSKD 441 (464)
T ss_dssp SBEEEEEECGGGGTCS-CEEEC----------------------------------------CEECCSSCSSCCBCCTTC
T ss_pred eeeeeEEEeccccccc-ccccCc--------------------cccc----c-----ccCcccceeecCCCCCcCCCCCC
Confidence 9999999999875432 222100 0000 0 01224689999999999999999
Q ss_pred CCceecCCCCCc-ccCCCCccc
Q 006900 596 VPWSWDKRYTKK-DVYGQVWPR 616 (626)
Q Consensus 596 ~PW~~d~~y~~p-D~~G~~w~~ 616 (626)
+||+++++|.+| |++|++|++
T Consensus 442 ~Pw~~~~~~~~~~D~~G~~w~p 463 (464)
T 1jy1_A 442 RPWIWNIPYVKAPDTHGNMWVP 463 (464)
T ss_dssp CBCCTTSCBCSSCCTTSCCBCC
T ss_pred CCeeCCCCCCCcccCCcCcCCC
Confidence 999999999997 999999986
No 2
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=100.00 E-value=9.9e-95 Score=802.26 Aligned_cols=394 Identities=18% Similarity=0.263 Sum_probs=300.0
Q ss_pred CCCCceEEEEecCCCCC----CCCCceeechhccc-cHhhhhhhhcccCHhhhhccCCCCCCCCeEEEEeCCCCc---hh
Q 006900 159 KLPSTFRLLRVQGLPAW----ANTSCVSIRDVIQG-DIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDG---TL 230 (626)
Q Consensus 159 ~~~s~FrL~rv~g~~~~----~n~~~Itl~Dll~~-~L~~avl~nF~~Dl~WLl~~~p~~~~~~~i~Vv~ge~~~---~~ 230 (626)
.+++||||+++++++.+ +|.++|+|+|||++ +|+.|++||||+|++|||++|+.. +..|+||||+... ..
T Consensus 77 ~~~spf~L~~~~~~~~~~~~~~n~~~isl~dlL~~~~l~~a~~~nF~~Di~WLl~~~~~~--~~~v~iv~g~~~~~~~~r 154 (544)
T 1q32_A 77 AKGAVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQN--VENITIVGQKGTIMPIEA 154 (544)
T ss_dssp --CCEEEEECCTTTTCCC-------EECHHHHHCCTTEEEEEEECSCEEHHHHHTTSCTT--CCEEEEEEETTCEECCCG
T ss_pred CCCCCeEEEEecccCcccccCCCCCceeHHHHcCCchHHHHHHHHHHHhHHHHHhhCccc--CCcEEEEecCCcCCchhh
Confidence 37799999999998865 58999999999986 799999999999999999999842 2368888886541 11
Q ss_pred hhh---hhcCCCceEEecCCCCCCCCCccceeEEEEeCCc-eEEEEeCCCCCccccccccceEEeeccCCCCCCCCCCCC
Q 006900 231 EHM---KRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEEC 306 (626)
Q Consensus 231 ~~~---~~~~~~n~~l~~p~mp~~fGthHSKmmLL~y~dg-lRVVI~TANLi~~DW~~~tQ~vW~qDfP~~~~~s~~~~t 306 (626)
..+ .+..++||++|+|+||. |||||||||||+|+|| ||||||||||+++||+++||+||+|||+.+. +.+.++
T Consensus 155 ~~~~~~~~~~~~nv~l~~p~mp~-fGthHSKmmlL~y~dg~lRVVI~TANLi~~DW~~~tQ~vW~sp~lp~~--s~g~~~ 231 (544)
T 1q32_A 155 RAMDATLAVILKKVKLIEITMPP-FASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCWCSPLLKIG--KEGLPV 231 (544)
T ss_dssp GGCCHHHHHHHTTEEEEEECCCT-TCCBCCCEEEEEESTTEEEEEEESSCBSHHHHHSSBCEEEECCCEEEC--CCSSCC
T ss_pred hhhhHHhhccCCCeEEEeCCCCC-CCCCCceeEEEEecCCCEEEEEeCCCCChHHhccccceEEECCccccc--CCCCCC
Confidence 111 11124699999999998 9999999999999998 9999999999999999999999999964332 234579
Q ss_pred CcHHHHHHHHHhcCCCccccCCCCCCCcccccccccccccccc-ceEEEEecCCCccCCCcccccHHHHHHHHhhcc--c
Q 006900 307 GFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGYHTGSSLKKWGHMKLRTVLQECT--F 383 (626)
Q Consensus 307 ~Fk~dL~~YL~ay~~~~~~~~~p~~g~~~i~~~~L~~yDFS~a-~v~LVaSVPG~H~g~~~~~~G~~rL~~vL~~~~--~ 383 (626)
+|+.||++||++|+++.+.. + | ++.|++||||.+ +|+||+||||+|.| |||++|+++|++++ +
T Consensus 232 ~Fk~dL~~yL~ay~~~~l~~-------~-i-i~~l~~~DFS~~~~v~lV~SvPG~h~~-----~G~~~L~~~L~~~~~~~ 297 (544)
T 1q32_A 232 PFKRSLIEYLNSYHLKDIDE-------L-I-TKSVEEVNFAPLSELEFVYSTPSKFQS-----SGLLSFYNKLEKLSAGT 297 (544)
T ss_dssp HHHHHHHHHHHTTCCHHHHH-------H-T-HHHHHTEECGGGTTCEEEEECCCTTSC-----CHHHHHHHHHHHTC---
T ss_pred chHHHHHHHHHHcCCcccch-------H-H-HHHHHhcCcccCCceEEEEecCCccCC-----ccHHHHHHHHHHhhccC
Confidence 99999999999999864322 1 1 478999999999 99999999999998 69999999999987 4
Q ss_pred cCCCccCCeEEEecCCCc-Cc-hHHHHHHHHhccC---C-----CCC-CCCC---------------CCCCCceEeccCc
Q 006900 384 EKGFKKSPLVYQFSSLGS-LD-EKWMAELSSSMSS---G-----FSE-DKTP---------------LGIGEPLIVWPTV 437 (626)
Q Consensus 384 ~~~~~~~~i~~Q~SSIGs-l~-~~wL~ef~~sl~~---~-----~~~-~~~p---------------~~~~~~~IIfPTv 437 (626)
....+.++|+||+||||+ ++ ++||++|..+|+. | ... ...+ ....+++|||||+
T Consensus 298 ~~~~~~~~iv~Q~SSIGs~l~~~~Wl~~f~~~l~~~~~g~~~~~~~~~~~~~k~~~~~~~~l~~~~~~~~~~~~IIfPT~ 377 (544)
T 1q32_A 298 SASDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTE 377 (544)
T ss_dssp ---CCEEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-----------CCCHHHHHHHHHHHTEEEEEECCBS
T ss_pred CCCCCCCcEEEEecccccccCcchhHHHHHHHHhhhhccccccCcccccccccccccccchhcccccccCCCceEEcCCH
Confidence 433346899999999999 76 5898777655432 1 111 0000 0135689999999
Q ss_pred hhhhcCccCCcCCccccCCCcc---chhhHHHHHhhhhcc----CCCCCCCCCCceeEEEeeC-----------------
Q 006900 438 EDVRCSLEGYAAGNAIPSPQKN---VDKDFLKKYWAKWKA----SHTGRSRAMPHIKTFARYN----------------- 493 (626)
Q Consensus 438 eeVr~S~~G~~~Ggsi~~~~~~---~~k~~l~~~~~kw~~----~~~gR~~a~PHiKty~r~~----------------- 493 (626)
+|||+|.+||.+|||||++.+. .+++|+++++|+|++ ..+||++||||||||+|++
T Consensus 378 e~Vr~S~~G~~~Ggsi~~~~~~~~~~~~~~l~~~~~~w~~~~~~~~s~R~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~ 457 (544)
T 1q32_A 378 QEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTPAHSKFYMHCATNSAGPCDASQVFKELE 457 (544)
T ss_dssp GGGTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSCTTTTTCCBCCEEEEEEEECC-------CTTSEES
T ss_pred HHHhhcccccCccceEEeccchhhhhhhHHHhhhhhhccCCCccccCCCCCccCceEEEEeeccccccccccCCCcccee
Confidence 9999999999999999986432 345799999999997 5779999999999999863
Q ss_pred -----cccchHHhhcccccCCceeEeceeeeEEEEcCCcccC-C--CccccccCCCCCccccCCccchhcccceeeeeec
Q 006900 494 -----GQKLAKAAWGALQKNNSQLMIRSYELGVLILPSAKRH-G--CGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTW 565 (626)
Q Consensus 494 -----s~NLSkaAWG~l~k~~sql~IrnYElGVL~~P~~~~~-~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (626)
||||||||||+++| +|||||||||| |..+.. . ..++|..
T Consensus 458 W~lltSaNLSkaAWG~~~k-----~irnyElGVL~-P~~~~~~~~~~~~p~~~--------------------------- 504 (544)
T 1q32_A 458 WCLYTSANLSQTAWGTVSR-----KPRNYEAGVLY-HSRRLANTRKVTCRTFT--------------------------- 504 (544)
T ss_dssp EEEEESCCBSHHHHCCSSS-----CCSSBEEEEEE-EGGGC---CCEEEEEGG---------------------------
T ss_pred EEEEccccCCHHHhhhhhc-----cccceEeEEEe-cccccccccceeccccc---------------------------
Confidence 58999999999987 69999999999 654311 1 0111111
Q ss_pred cCCCCCCCCCccccccccCCCCCCCCCCCCCCceecCCCCC
Q 006900 566 HGSSDAGASSEVVYLPVPYELPPQRYSSEDVPWSWDKRYTK 606 (626)
Q Consensus 566 ~~~~~~~~~~~~~~~pvPy~LP~~~Y~~~D~PW~~d~~y~~ 606 (626)
.+.. +.....+.|||||+||++||+++|+||+++.+|.+
T Consensus 505 -~d~~-~~~~~~~~~~vPydlP~~~Y~~~D~Pw~~~~~~~~ 543 (544)
T 1q32_A 505 -RDRR-GCAGNPTHVAVPFTLPVIPYDLAEDECFCLARHEN 543 (544)
T ss_dssp -GC--------CCSEEESSCSSCEECCTTTCCBCCC-----
T ss_pred -ccCc-ccccCcccccccCCCCcccCCCCCCCccccccccc
Confidence 1100 00122367999999999999999999999999975
No 3
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=100.00 E-value=2.8e-93 Score=778.17 Aligned_cols=392 Identities=17% Similarity=0.285 Sum_probs=305.8
Q ss_pred CceEEEEecCCCCC----CCCCceeechhccc-cHhhhhhhhcccCHhhhhccCCCCCCCCeEEEEeCCCCc---h--h-
Q 006900 162 STFRLLRVQGLPAW----ANTSCVSIRDVIQG-DIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDG---T--L- 230 (626)
Q Consensus 162 s~FrL~rv~g~~~~----~n~~~Itl~Dll~~-~L~~avl~nF~~Dl~WLl~~~p~~~~~~~i~Vv~ge~~~---~--~- 230 (626)
.||||+++++++.+ .|.++|||+|||++ +|+.|++||||+|++|||++|+.. ++.|+||+++.+. + .
T Consensus 3 ~~fkL~~~~~y~~~~~~~~n~d~ItL~DlL~~~~L~~avlfnF~~Di~WLl~~~~~~--~~~v~iv~~~g~~~~~~~~~~ 80 (470)
T 3sq7_A 3 AVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQN--VENITIVGQKGTIMPIEARAM 80 (470)
T ss_dssp CEEEEECCTTTSCCC-------EECHHHHHCCTTEEEEEEECSCEEHHHHHTTSCTT--CCEEEEEEETTSEECCCGGGC
T ss_pred CceEEEeecCcCccccccCCCCceeHHHhcCCchHHHHHhhhhhhcHHHHHhhCccc--cCceEEEEeCCcccccchhhh
Confidence 58999999999976 68899999999997 789999999999999999999853 3456676643221 1 1
Q ss_pred -hhhhhcCCCceEEecCCCCCCCCCccceeEEEEeCCc-eEEEEeCCCCCccccccccceEEeeccCCCCCCCCCCCCCc
Q 006900 231 -EHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGF 308 (626)
Q Consensus 231 -~~~~~~~~~n~~l~~p~mp~~fGthHSKmmLL~y~dg-lRVVI~TANLi~~DW~~~tQ~vW~qDfP~~~~~s~~~~t~F 308 (626)
+.+.+ ..+|+++|.|+|| +|||||||||||+|+|| ||||||||||+++||+..||+|| |+|+++......+++|
T Consensus 81 ~~~~~~-~~~nv~~i~~~mP-~fGthHsKmmlL~y~dg~~RVvI~TANl~~~Dw~~~tq~~W--~~P~l~~~~~~~~s~F 156 (470)
T 3sq7_A 81 DATLAV-ILKKVKLIEITMP-PFASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCW--CSPLLKIGKEGLPVPF 156 (470)
T ss_dssp CHHHHH-HHTTEEEEEECCC-TTCCBCCCEEEEEETTSEEEEEEESSCBSHHHHHSSBCEEE--ECCCEEECCCCSCCHH
T ss_pred hHHHHh-hcCCceEEecCCC-CcCCccceeEEEEecCCCEEEEEecCCCChhhhcccceEEE--EccCCcCCCCCCCCcc
Confidence 11222 2359999999999 99999999999999988 99999999999999999999999 5555542223456799
Q ss_pred HHHHHHHHHhcCCCccccCCCCCCCcccccccccccccccc-ceEEEEecCCCccCCCcccccHHHHHHHHhhccccC--
Q 006900 309 ENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEK-- 385 (626)
Q Consensus 309 k~dL~~YL~ay~~~~~~~~~p~~g~~~i~~~~L~~yDFS~a-~v~LVaSVPG~H~g~~~~~~G~~rL~~vL~~~~~~~-- 385 (626)
++||++||++|+.+.+. ..+++.|++||||++ +|+||+||||+|. .|||++|+++|+++++..
T Consensus 157 k~dL~~yL~~y~~~~l~---------~~~i~~l~~~DFS~~~~v~lV~SvPG~~~-----~~G~~~L~~~L~~~~~~~~~ 222 (470)
T 3sq7_A 157 KRSLIEYLNSYHLKDID---------ELITKSVEEVNFAPLSELEFVYSTPSKFQ-----SSGLLSFYNKLEKLSAGTSA 222 (470)
T ss_dssp HHHHHHHHHTTCCHHHH---------HHTHHHHHTEECGGGTTCEEEEECCCTTS-----CCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHhCCchhH---------HHHHHHHHhCCCCCCCcEEEEEecCCCCc-----cchHHHHHHHHHHhccCCCc
Confidence 99999999999987531 112588999999999 5999999999984 599999999999988643
Q ss_pred CCccCCeEEEecCCCc-Cch----HHHHH-HHHhccCCCCC------CC----CCC----------CCCCceEeccCchh
Q 006900 386 GFKKSPLVYQFSSLGS-LDE----KWMAE-LSSSMSSGFSE------DK----TPL----------GIGEPLIVWPTVED 439 (626)
Q Consensus 386 ~~~~~~i~~Q~SSIGs-l~~----~wL~e-f~~sl~~~~~~------~~----~p~----------~~~~~~IIfPTvee 439 (626)
..++++|+||+||||+ |+. +||++ |..+|++.... ++ .|. ...+++|||||+||
T Consensus 223 ~~~~~~iv~Q~SSIGs~l~~~~~~~~f~~~l~~~lsg~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~iIfPTvee 302 (470)
T 3sq7_A 223 SDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQE 302 (470)
T ss_dssp CSSCEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-----------CCCHHHHHHHHHHTTEEEEEECCBTGG
T ss_pred ccCCCcEEEEeCCcccCCCCccchhHHHHHHHHHhhcccCccccccccccccccCCccchhhhhccCCCCeEEEcCCHHH
Confidence 2357899999999998 984 67875 66666653221 01 110 13458999999999
Q ss_pred hhcCccCCcCCccccCCCccchh--hHHH---HHhhhhccC--CCCCCCCCCceeEEEeeC-------------------
Q 006900 440 VRCSLEGYAAGNAIPSPQKNVDK--DFLK---KYWAKWKAS--HTGRSRAMPHIKTFARYN------------------- 493 (626)
Q Consensus 440 Vr~S~~G~~~Ggsi~~~~~~~~k--~~l~---~~~~kw~~~--~~gR~~a~PHiKty~r~~------------------- 493 (626)
||+|++||.+||||||+.++..+ .||+ +|||||.++ +.+|++||||||||||++
T Consensus 303 Vr~S~~Gy~aGgsip~~~~~~~~q~~~l~~~~~~~~kw~~~~~~~~R~~a~PHiKtY~r~s~~~~~~~~~~~~~~~i~W~ 382 (470)
T 3sq7_A 303 FVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTPANSKFYMHCATNSAGPCDASQVFKELEWC 382 (470)
T ss_dssp GTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSCTTTTTCCBCCEEEEEEEC--------CCTTSEESEE
T ss_pred HhcCccccccCceeeecccchHHHHHHHhcccceEecccCcCCCCCCCCcCCceEEEEEecccccccccccCCCceeeEE
Confidence 99999999999999999766533 6887 789999986 578999999999999863
Q ss_pred ---cccchHHhhcccccCCceeEeceeeeEEEEcCCcccCCCccccccCCCCCccccCCccchhcccceeeeeeccCCCC
Q 006900 494 ---GQKLAKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSD 570 (626)
Q Consensus 494 ---s~NLSkaAWG~l~k~~sql~IrnYElGVL~~P~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (626)
||||||||||+++| +||||||||||+|+++.+...+.|.... +.. .+.
T Consensus 383 LlTSaNLSkaAWG~l~k-----~irsYElGVL~~p~~~~~~~~~~~~~~~----~~~-------------------~~~- 433 (470)
T 3sq7_A 383 LYTSANLSQTAWGTVSR-----KPRNYEAGVLYHSRRLANTRKVTCRTFT----RDR-------------------RGC- 433 (470)
T ss_dssp EEESCCBSHHHHCCSSS-----CCSSBEEEEEEEGGGSSSSCCEEEEEGG----GC------------------------
T ss_pred EEecccCCHHHhhhhcc-----CCcceeeeEEEccccccccceeeccccc----ccc-------------------ccc-
Confidence 58999999999998 6999999999999987554333332221 000 000
Q ss_pred CCCCCccccccccCCCCCCCCCCC-CCCceecCCCC
Q 006900 571 AGASSEVVYLPVPYELPPQRYSSE-DVPWSWDKRYT 605 (626)
Q Consensus 571 ~~~~~~~~~~pvPy~LP~~~Y~~~-D~PW~~d~~y~ 605 (626)
....+.|||||+||++||++. |+|||....|.
T Consensus 434 ---~~~~~~~~vPf~lP~~~Y~~~~D~p~~~~~~~~ 466 (470)
T 3sq7_A 434 ---AGNPTHVAVPFTLPVIPYDLAEDECFCLALEHH 466 (470)
T ss_dssp ------CCSEEESSCSSCEECCTTTCCBCCCCCTTC
T ss_pred ---cCCCceeeecCCCCCccCCCCCCcceeeehhhc
Confidence 112478999999999999999 99999887653
No 4
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.60 E-value=1.4e-15 Score=136.05 Aligned_cols=96 Identities=23% Similarity=0.325 Sum_probs=86.8
Q ss_pred cceeeEeeCCCCccCCCCCCcccCC--CCCccccCCCcc-ccccccccceeEEEecCC-ccEEEEeecCCcEEEeeCCcc
Q 006900 4 TKIGYLVPLDNNLREDNSLPKLPLS--QGPNVIGRTNIP-VSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQR 79 (626)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (626)
..+.+|+|++.+ .|.|+|+ .|+++|||+... +.|||+||+|+.|+++.+ |.+.+...|+||..|++
T Consensus 7 ~~~c~L~~~~~~------~~~I~Lp~~~g~~viGR~p~t~I~DkrcSR~hv~L~ad~~~~~v~vk~lG~Np~~vng---- 76 (110)
T 2brf_A 7 PGRLWLESPPGE------APPIFLPSDGQALVLGRGPLTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGT---- 76 (110)
T ss_dssp -CEEEEECSTTS------SCCEECCSTTCCEEECSBTTTTBCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-----
T ss_pred CcEEEEEeCCCC------CCcEEeccCCCCEEEcCCCCcccccccceeeeEEEEEecCCCEEEEEEcccCCcEECC----
Confidence 458899998743 7899996 799999999987 999999999999999886 89999999999999987
Q ss_pred cccCcccccccccCCcccccCCCccceeee
Q 006900 80 KKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (626)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (626)
++|..++++++.+||++||.||.|+|+++-
T Consensus 77 ~~l~k~~~~~L~~GD~leLl~g~y~~~v~f 106 (110)
T 2brf_A 77 QELKPGLEGSLGVGDTLYLVNGLHPLTLRW 106 (110)
T ss_dssp CBCCTTCEEEEETTCEEEEETTEEEEEEEE
T ss_pred EEcCCCCEEEecCCCEEEEccCCeEEEEEe
Confidence 789999999999999999999999998876
No 5
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=99.57 E-value=3e-15 Score=138.62 Aligned_cols=97 Identities=23% Similarity=0.290 Sum_probs=89.2
Q ss_pred cceeeEeeCCCCccCCCCCCcccCC--CCCccccCCCc-cccccccccceeEEEecCC-ccEEEEeecCCcEEEeeCCcc
Q 006900 4 TKIGYLVPLDNNLREDNSLPKLPLS--QGPNVIGRTNI-PVSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQR 79 (626)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (626)
.++.||+|++.+ .|.|.|+ .|+++|||+.. .|.|||+||+|+.|+++.+ |.+.+...|+||..|++
T Consensus 7 ~~~c~L~p~d~~------~~~I~Lp~~~g~vvIGRgPet~ItDkRcSR~qv~L~ad~~~g~V~Vk~lG~NP~~vng---- 76 (143)
T 1yj5_C 7 RGRLWLQSPTGG------PPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGV---- 76 (143)
T ss_dssp CEEEEEECCTTS------CCCEECCTTTCEEEECSBTTTTBCCSSSCSSCEEEEEETTTTEEEEEECSSSCCEETT----
T ss_pred CCeEEEEecCCC------CCcEEeccCCCCEEEcCCCccccccccccceeEEEEEecCCCeEEEEEcccCCcEECC----
Confidence 458899998743 7899996 79999999998 8999999999999999886 89999999999999986
Q ss_pred cccCcccccccccCCcccccCCCccceeeee
Q 006900 80 KKLSSNEHVSIADGDIIELIPGHHFFKYVTL 110 (626)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 110 (626)
++|..++++.+.+||++||+||.|+|+++..
T Consensus 77 ~~L~k~~~~~L~~GD~LeLl~g~y~f~V~f~ 107 (143)
T 1yj5_C 77 HELKPGLSGSLSLGDVLYLVNGLYPLTLRWE 107 (143)
T ss_dssp EECCTTCEEEECTTCEEESSSSCSEEEEEEE
T ss_pred EEecCCCEEEecCCCEEEEecCCceEEEEec
Confidence 7899999999999999999999999999986
No 6
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.54 E-value=8.2e-15 Score=132.61 Aligned_cols=97 Identities=23% Similarity=0.295 Sum_probs=88.0
Q ss_pred cceeeEeeCCCCccCCCCCCcccCC--CCCccccCCCc-cccccccccceeEEEecCC-ccEEEEeecCCcEEEeeCCcc
Q 006900 4 TKIGYLVPLDNNLREDNSLPKLPLS--QGPNVIGRTNI-PVSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQR 79 (626)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (626)
..+-+|+|++.+ .|.|+|+ .|+++|||+.. .+.|||+||+|+.|+++.+ |.+.+...|+||..|++
T Consensus 14 ~~~c~L~~~~~~------~~~I~Lp~~~g~~viGRgp~t~I~DkrcSR~qv~L~ad~~~~~v~vk~lG~NP~~vng---- 83 (119)
T 1ujx_A 14 RGRLWLQSPTGG------PPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGV---- 83 (119)
T ss_dssp CCCEEEECCSSS------CCCCCCCTTSCCEEESBBTTTTBCCTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSS----
T ss_pred cceEEEEeCCCC------CCcEEeccCCCCEEEcCCCCcccccccccceeEEEEEecCCCEEEEEEcccCCcEECC----
Confidence 347899998744 7899996 79999999998 8999999999999999886 89999999999998876
Q ss_pred cccCcccccccccCCcccccCCCccceeeee
Q 006900 80 KKLSSNEHVSIADGDIIELIPGHHFFKYVTL 110 (626)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 110 (626)
++|..++++++.+||.+||.||.|+|+++..
T Consensus 84 ~~l~k~~~~~L~~GD~l~Ll~g~y~~~v~f~ 114 (119)
T 1ujx_A 84 QELKPGLSGSLSLGDVLYLVNGLYPLTLRWS 114 (119)
T ss_dssp SBCCTTCEEEEETTCCCBCBTTBSCCEEEEC
T ss_pred EEecCCCEEEecCCCEEEEecCCeEEEEEec
Confidence 7899999999999999999999999988766
No 7
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.34 E-value=1.6e-12 Score=114.91 Aligned_cols=95 Identities=21% Similarity=0.383 Sum_probs=84.5
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCcc-ccCCCc-cccccccccceeEEEecCC-ccEEEEeecCCcEEEeeCCcccc
Q 006900 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNV-IGRTNI-PVSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQRKK 81 (626)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (626)
+.-||+|.+ ++.|.|.|+.|.+| |||+.. .+.|||.||+|..|+++.+ |.+.+...|+||..|. -++
T Consensus 3 ~~c~L~~~~------~~~~~I~L~~g~~v~iGR~p~t~I~DkrcSR~h~~L~~~~~~g~v~vk~lg~Np~~vn----g~~ 72 (102)
T 3kt9_A 3 RVCWLVRQD------SRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSID----SVV 72 (102)
T ss_dssp CEEEEEETT------STTCEEECCBTCEEEECSSTTTCCCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEET----TEE
T ss_pred ceEEEEecC------CCCCcEEcCCCCcEEeccCCccccccCcccCcceEEEEecCCCEEEEEECcCCCCeEC----CEE
Confidence 456888864 55899999999997 599988 7999999999999999984 7889999999999994 378
Q ss_pred cCcccccccccCCcccccCCCccceeee
Q 006900 82 LSSNEHVSIADGDIIELIPGHHFFKYVT 109 (626)
Q Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (626)
+..+..+.+.+||+++|.||.|.|+.+.
T Consensus 73 l~k~~~~~L~~GD~l~Ll~~~~~~~v~f 100 (102)
T 3kt9_A 73 IGKDQEVKLQPGQVLHMVNELYPYIVEF 100 (102)
T ss_dssp CCBTCEEEECTTCCEEEETTEEEEEEEE
T ss_pred cCCCCeEEeCCCCEEEEccCCceEEEEe
Confidence 9999999999999999999999997764
No 8
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=97.69 E-value=4.6e-05 Score=67.98 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=71.4
Q ss_pred cceeeEeeCCCCccCCCCCCcccCCCCCccccCC---Ccccccc-ccccceeEEEecC-CccEEEEeecCCcEEEeeCCc
Q 006900 4 TKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT---NIPVSDK-RLSRKHITLTASA-DGSASLVVDGTNPVVVKSGDQ 78 (626)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (626)
...|+|+||+.+. ..+.++|..+..+|||+ +|++.|. .+||+|.+|+... +|.+.|.=..+|...|+.
T Consensus 2 ~~wg~L~~~~~~~----~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D~S~NGt~vng--- 74 (116)
T 1lgp_A 2 QPWGRLLRLGAEE----GEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINK--- 74 (116)
T ss_dssp CCCEEECCTTCCS----SSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCC---
T ss_pred CCEEEEEEeCCCC----CccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCCeEEEEECCcCCcEECC---
Confidence 4689999997643 24678999999999995 5888775 8999999999974 777766667788887763
Q ss_pred ccccCcccccccccCCcccccCC
Q 006900 79 RKKLSSNEHVSIADGDIIELIPG 101 (626)
Q Consensus 79 ~~~~~~~~~~~i~~~~~~~~~~~ 101 (626)
+++.....+.+.+||.|.+-..
T Consensus 75 -~~l~~~~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 75 -LKVVKKQTCPLQTGDVIYLVYR 96 (116)
T ss_dssp -CCCCCSSCCCCCTTCEEEEECC
T ss_pred -EEcCCCCcEECCCCCEEEEecc
Confidence 3566666778999999998764
No 9
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=96.95 E-value=0.00093 Score=60.58 Aligned_cols=88 Identities=24% Similarity=0.293 Sum_probs=68.4
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCC-------------CccccC---CCcccccc-ccccceeEEEecCCccEEEEeec
Q 006900 5 KIGYLVPLDNNLREDNSLPKLPLSQG-------------PNVIGR---TNIPVSDK-RLSRKHITLTASADGSASLVVDG 67 (626)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 67 (626)
.++.|++++.. .|.+.|... ..+||| ++|++.|. ++||+|..|....+|.+.|.=-.
T Consensus 4 ~~~~L~~~~~~------~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~~g~~~l~DlS 77 (127)
T 1g6g_A 4 IVCRVICTTGQ------IPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDIS 77 (127)
T ss_dssp EEEEEEESSSS------SCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECTTSCEEEEECC
T ss_pred eEEEEEECCCC------CCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECCCCcEEEEECC
Confidence 57888887654 566666544 899999 47888886 79999999999778877665558
Q ss_pred CCcEEEeeCCcccccCcccccccccCCcccccCCC
Q 006900 68 TNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGH 102 (626)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 102 (626)
+|...|+. +++.....+.+.+||.|.+=.+.
T Consensus 78 ~NGT~vNg----~~l~~~~~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 78 TNGTWLNG----QKVEKNSNQLLSQGDEITVGVGV 108 (127)
T ss_dssp SSCCEETT----EECCTTCCEECCTTCEEEECTTS
T ss_pred cCCeEECC----EEcCCCCeEEcCCCCEEEECCCc
Confidence 99998852 45666677889999999987654
No 10
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=96.72 E-value=0.0026 Score=59.29 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=72.4
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCccccCC---Cccccccc---------cccceeEEEecCCc----cEEEEeecC
Q 006900 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT---NIPVSDKR---------LSRKHITLTASADG----SASLVVDGT 68 (626)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~ 68 (626)
..|.|++++.. .+.|+|..+..+|||+ +|++.|.. +||+|.+|....++ .+.|.=-.+
T Consensus 29 ~w~~L~~~~~~------~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~St 102 (149)
T 1gxc_A 29 PWARLWALQDG------FANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSG 102 (149)
T ss_dssp CCEEEEECSTT------CCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCS
T ss_pred eeEEEEEcCCC------CceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCC
Confidence 47899998753 4569999999999995 68888885 99999999988763 444433477
Q ss_pred CcEEEeeCCcccccCcccccccccCCcccccCCC-ccceeeee
Q 006900 69 NPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGH-HFFKYVTL 110 (626)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~ 110 (626)
|-.-|+ -+++.+..++.+.+||.|.+-... ..|.|+..
T Consensus 103 NGT~VN----g~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~ 141 (149)
T 1gxc_A 103 NGTFVN----TELVGKGKRRPLNNNSEIALSLSRNKVFVFFDL 141 (149)
T ss_dssp SCEEET----TEECCTTCEEECCTTEEEEESSTTCEEEEEEET
T ss_pred CCeEEC----CEECCCCCeEECCCCCEEEECCCCCeEEEEEEC
Confidence 877775 246777778889999999997754 34656554
No 11
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=96.66 E-value=0.0021 Score=58.96 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=71.5
Q ss_pred cceeeEeeCCCCccCCCCCCcccCCCCCccccC---CCccccccccccceeEEEecC-CccEE-EEeecCCcEEEeeCCc
Q 006900 4 TKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASA-DGSAS-LVVDGTNPVVVKSGDQ 78 (626)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 78 (626)
.++|.|+-+.... ..--.++|..|..+||| ++|++.|..+||.|..|.... +|... .+...+|...|+ ++
T Consensus 22 ~p~g~L~v~~g~~---~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vN--g~ 96 (132)
T 3va4_A 22 EPIGQLRLFSGTH---GPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIV--KP 96 (132)
T ss_dssp CCSEEEEECCBTT---BSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEET--TT
T ss_pred CCcEEEEEEeCCC---CCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEEC--CE
Confidence 4678888876544 12345888999999999 469999999999999999874 45443 344578998884 33
Q ss_pred ccccCcccccccccCCcccccCCCccceee
Q 006900 79 RKKLSSNEHVSIADGDIIELIPGHHFFKYV 108 (626)
Q Consensus 79 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 108 (626)
+-+|.+...+.+.+||.|.+ |..-+.|.
T Consensus 97 ~i~l~~~~~~~L~~GD~I~l--G~~~l~f~ 124 (132)
T 3va4_A 97 PRVLPPGVSHRLRDQELILF--ADFPCQYH 124 (132)
T ss_dssp TEEECTTCCEECCTTCEEEE--TTEEEEEE
T ss_pred EcccCCCCEEECCCCCEEEE--CCEEEEEE
Confidence 43477778888999999987 45555443
No 12
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=96.48 E-value=0.0016 Score=60.73 Aligned_cols=97 Identities=21% Similarity=0.307 Sum_probs=70.7
Q ss_pred cceeeEeeCCCCccCCCCCCcccCCC-CCccccC---CCccccccccccceeEEEec-------CCccEEEEeecCCcEE
Q 006900 4 TKIGYLVPLDNNLREDNSLPKLPLSQ-GPNVIGR---TNIPVSDKRLSRKHITLTAS-------ADGSASLVVDGTNPVV 72 (626)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 72 (626)
...|.|+.++++. -..++|.. +..+||| ++|++.|..+||+|.+|... .+|.+.|.=-.+|-..
T Consensus 16 ~~~~~L~~~~~~~-----g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT~ 90 (151)
T 2jqj_A 16 TCLGHLVNLIPGK-----EQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTF 90 (151)
T ss_dssp CEEEEEEEEETTE-----EEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCEE
T ss_pred CceEEEEEecCCC-----ceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCeE
Confidence 3578999887653 34678875 8999999 57999999999999999983 3455545433899998
Q ss_pred EeeCCcccccCcccccccccCCcccccCC-Cccceeeee
Q 006900 73 VKSGDQRKKLSSNEHVSIADGDIIELIPG-HHFFKYVTL 110 (626)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~ 110 (626)
|+ + +++... .+.+.+||+|.+=.+ .+.|+++..
T Consensus 91 VN--g--~~i~~~-~~~L~~GD~I~lG~~~~~~f~~~~~ 124 (151)
T 2jqj_A 91 IN--G--NRLVKK-DYILKNGDRIVFGKSCSFLFKYASS 124 (151)
T ss_dssp ET--T--EECCSS-CEEECSSEEEEETTTEEEEEEECSS
T ss_pred EC--C--EEcCCC-ceECCCCCEEEECCCcEEEEEEcCC
Confidence 86 2 345554 567999999999763 455654433
No 13
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=96.43 E-value=0.0051 Score=57.95 Aligned_cols=97 Identities=24% Similarity=0.326 Sum_probs=68.3
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCC--ccccCC---CccccccccccceeEEEecC--C------------ccEEEEee
Q 006900 6 IGYLVPLDNNLREDNSLPKLPLSQGP--NVIGRT---NIPVSDKRLSRKHITLTASA--D------------GSASLVVD 66 (626)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~ 66 (626)
.-.|.|+..... -..|+|.+|. .+|||+ +|++.|..+||.|..|.... + |...|.=-
T Consensus 5 ~l~L~p~~~~~~----~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~Dl 80 (158)
T 1dmz_A 5 FLTLKPLPDSII----QESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT 80 (158)
T ss_dssp CEEEEECTTSSC----CCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEEC
T ss_pred EEEEEeCCCCcc----ceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEEC
Confidence 345777776443 2578888887 999997 68999999999999998754 1 33333222
Q ss_pred cCCcEEEeeCCcccccCcccccccccCCcccc---cCCCccceeeee
Q 006900 67 GTNPVVVKSGDQRKKLSSNEHVSIADGDIIEL---IPGHHFFKYVTL 110 (626)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~ 110 (626)
.+|-.-|+. +++.....+.+.+||+|.+ ..|...+.|...
T Consensus 81 StNGT~VNg----~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~~ 123 (158)
T 1dmz_A 81 GTNVSYLNN----NRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVE 123 (158)
T ss_dssp STTCCEETT----EECCSSEEEECCSSCCEESCCCTTTTCCCCEEEE
T ss_pred CcCCeEECC----EEcCCCceEEcCCCCEEEEeecCCCCEEEEEEEE
Confidence 788887752 4566666678999999999 446665555543
No 14
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=96.20 E-value=0.0049 Score=54.77 Aligned_cols=79 Identities=24% Similarity=0.387 Sum_probs=58.4
Q ss_pred CCcccCCCCCccccCC---CccccccccccceeEEEecCCccEEEE-eecCCcEEEeeCCcccccCcccccccccCCccc
Q 006900 22 LPKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLV-VDGTNPVVVKSGDQRKKLSSNEHVSIADGDIIE 97 (626)
Q Consensus 22 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 97 (626)
-..++|..+..+|||. +|++.|..+||+|.+|.... |.+.|. ...+|...|+ +.+ +. ++.+.+||.|.
T Consensus 23 g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~~-~~~~l~Dl~S~nGt~vn--g~~--i~---~~~L~~gd~i~ 94 (115)
T 2xt9_B 23 GSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLEG-GEFQVVDVGSLNGTYVN--REP--VD---SAVLANGDEVQ 94 (115)
T ss_dssp TCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEET-TEEEEEECSCSSCEEET--TEE--CS---EEEECTTCEEE
T ss_pred CeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEEC-CEEEEEECCCCCCeEEC--CEE--cc---eEECCCCCEEE
Confidence 3568888999999996 79999999999999999974 444443 3468999885 232 33 46799999999
Q ss_pred ccCCCccceeeee
Q 006900 98 LIPGHHFFKYVTL 110 (626)
Q Consensus 98 ~~~~~~~~~~~~~ 110 (626)
+ |..-+.|...
T Consensus 95 i--G~~~l~~~~~ 105 (115)
T 2xt9_B 95 I--GKFRLVFLTG 105 (115)
T ss_dssp E--TTEEEEEEC-
T ss_pred E--CCEEEEEEeC
Confidence 8 5555555443
No 15
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=96.08 E-value=0.0077 Score=55.37 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=59.2
Q ss_pred CcccCCCCC-ccccC----CCccccccccccceeEEEecC-CccEEE-EeecCCcEEEeeCCcccccCcccccccccCCc
Q 006900 23 PKLPLSQGP-NVIGR----TNIPVSDKRLSRKHITLTASA-DGSASL-VVDGTNPVVVKSGDQRKKLSSNEHVSIADGDI 95 (626)
Q Consensus 23 ~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 95 (626)
..++|..+. .+||| ++|++.|..+||+|.+|.... +|.+.| +...+|-..|+. +++.+...+.+.+||+
T Consensus 47 ~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg----~~l~~~~~~~L~~gd~ 122 (140)
T 2jpe_A 47 EKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGH----IRLEPHKPQQIPIDST 122 (140)
T ss_dssp EEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSS----CEECSSSCCEECTTCC
T ss_pred eEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCcEEEEECCCCCCeEECC----EECCCCccEECCCCCE
Confidence 467888875 99999 468999999999999999987 344433 335788887752 3566667778999999
Q ss_pred ccccCCCccc
Q 006900 96 IELIPGHHFF 105 (626)
Q Consensus 96 ~~~~~~~~~~ 105 (626)
|.+=.....|
T Consensus 123 i~~G~~~~~f 132 (140)
T 2jpe_A 123 VSFGASTRAY 132 (140)
T ss_dssp BBCSSCCCCB
T ss_pred EEECCceEEE
Confidence 9985444434
No 16
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=96.04 E-value=0.0072 Score=52.22 Aligned_cols=77 Identities=29% Similarity=0.425 Sum_probs=56.9
Q ss_pred CCCcccCCCCCccccC---CCccccccccccceeEEEecCCccEEEEe-ecCCcEEEeeCCcccccCcccccccccCCcc
Q 006900 21 SLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASADGSASLVV-DGTNPVVVKSGDQRKKLSSNEHVSIADGDII 96 (626)
Q Consensus 21 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 96 (626)
+--.++|..|..+||| ++|.+.|..+||.|..|.... |...|.= ..+|...|+ +++ +. ++.+.+||.|
T Consensus 14 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~~-~~~~l~Dl~S~nGt~vn--g~~--i~---~~~L~~gd~i 85 (100)
T 3po8_A 14 SGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDG-QVALLADLNSTNGTTVN--NAP--VQ---EWQLADGDVI 85 (100)
T ss_dssp SCCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEECS-SCEEEEECSCSSCCEET--TEE--CS---EEECCTTCEE
T ss_pred CCcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEeC-CEEEEEECCCCCCEEEC--CEE--Cc---eEECCCCCEE
Confidence 3557899999999999 579999999999999999864 4454443 358998885 333 22 4679999999
Q ss_pred cccCCCccc
Q 006900 97 ELIPGHHFF 105 (626)
Q Consensus 97 ~~~~~~~~~ 105 (626)
.+=.....|
T Consensus 86 ~iG~~~~~~ 94 (100)
T 3po8_A 86 RLGHSEIIV 94 (100)
T ss_dssp EETTEEEEE
T ss_pred EECCEEEEE
Confidence 885543333
No 17
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=95.94 E-value=0.014 Score=52.97 Aligned_cols=93 Identities=20% Similarity=0.339 Sum_probs=68.5
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCCccccC---CCccccccccccceeEEEecCCccEEEEeecCCcEEEeeCCccccc
Q 006900 6 IGYLVPLDNNLREDNSLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRKKL 82 (626)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (626)
.-|||=|+++..... .=-.+|.+| ++||| ++|++.|..+||+|-.++...+|.+.|.-.++|.+-|+. +| +
T Consensus 26 ~PhLvnLn~Dp~~s~-~l~y~L~~~-t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~~g~~~l~dl~~ngt~VNG--~~--V 99 (124)
T 3fm8_A 26 KCFLVNLNADPALNE-LLVYYLKEH-TLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTPQKNTRTFVNG--SS--V 99 (124)
T ss_dssp -CEEEETTCCTTSSC-CCEEECCSE-EEEESSTTCSEECCSTTCCSSCEEEEECTTSCEEEEECTTCCEEETT--EE--C
T ss_pred ccEEEEeCCCCccCc-eEEEECCCC-eEECCCCCCCEEECCCCeecceEEEEECCCCeEEEEECCCCCEEECC--EE--c
Confidence 458999988764333 334566676 89999 579999999999999999877898888888899988753 32 2
Q ss_pred CcccccccccCCcccccCCCcccee
Q 006900 83 SSNEHVSIADGDIIELIPGHHFFKY 107 (626)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~~ 107 (626)
. +++...+||.|.+=. .++|+|
T Consensus 100 ~--~~~~L~~GD~I~lG~-~~~FrF 121 (124)
T 3fm8_A 100 S--SPIQLHHGDRILWGN-NHFFRL 121 (124)
T ss_dssp C--SCEEECTTCEEEETT-TEEEEE
T ss_pred C--CcEECCCCCEEEECC-CeEEEE
Confidence 1 235688888887654 456655
No 18
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=95.92 E-value=0.0085 Score=53.32 Aligned_cols=88 Identities=23% Similarity=0.325 Sum_probs=62.4
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCC-ccccCC----CccccccccccceeEEEecCCccEEEE-eecCCcEEEeeCCcc
Q 006900 6 IGYLVPLDNNLREDNSLPKLPLSQGP-NVIGRT----NIPVSDKRLSRKHITLTASADGSASLV-VDGTNPVVVKSGDQR 79 (626)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (626)
...|+-++.... --.++|..|. -+|||. +|.+.|..+||+|.+|+...++ +.|. ...+|-..|+.
T Consensus 12 ~l~L~v~~g~~~----g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~-~~l~Dl~S~nGT~vng---- 82 (118)
T 1uht_A 12 SLRLVFVKGPRE----GDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGN-WVIQDLGSSNGTLLNS---- 82 (118)
T ss_dssp EEEEEESSSTTT----TCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECSSS-EEEECCCCSSCCEESS----
T ss_pred eEEEEEEeCCCC----CcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEECCE-EEEEECCCCCCeEECC----
Confidence 445565553321 2367888774 689997 7899999999999999987544 4444 34589988852
Q ss_pred cccCcccccccccCCcccccCCC
Q 006900 80 KKLSSNEHVSIADGDIIELIPGH 102 (626)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~ 102 (626)
+++.+...+.+.+||.|.+=...
T Consensus 83 ~~l~~~~~~~L~~gd~i~lG~~~ 105 (118)
T 1uht_A 83 NALDPETSVNLGDGDVIKLGEYT 105 (118)
T ss_dssp SBCCTTCEEECCTTEEEEETTTE
T ss_pred EECCCCCeEEcCCCCEEEECCeE
Confidence 34666667789999999885443
No 19
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=95.80 E-value=0.0077 Score=55.89 Aligned_cols=79 Identities=23% Similarity=0.354 Sum_probs=58.2
Q ss_pred CCcccCCCCCccccCC---CccccccccccceeEEEecCCccEEEE-eecCCcEEEeeCCcccccCcccccccccCCccc
Q 006900 22 LPKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLV-VDGTNPVVVKSGDQRKKLSSNEHVSIADGDIIE 97 (626)
Q Consensus 22 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 97 (626)
-..++|..+..+|||. +|.+.|..+||+|..|... +|.+.|. ...+|-..|+ +.| +. ++.+.+||.|.
T Consensus 58 g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~-~~~~~l~DlgS~NGT~VN--g~~--i~---~~~L~~GD~I~ 129 (143)
T 2kb3_A 58 GARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN-EGEFEVVDVGSLNGTYVN--REP--RN---AQVMQTGDEIQ 129 (143)
T ss_dssp TCEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE-TTEEEEEESCCSSCCEET--TEE--CS---EEECCTTEEEE
T ss_pred CeEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE-CCEEEEEECCCcCCeEEC--CEE--cc---eEECCCCCEEE
Confidence 3467888899999995 7999999999999999996 4444444 3358998885 332 33 46799999988
Q ss_pred ccCCCccceeeee
Q 006900 98 LIPGHHFFKYVTL 110 (626)
Q Consensus 98 ~~~~~~~~~~~~~ 110 (626)
+ |..-+.|...
T Consensus 130 i--G~~~l~f~~~ 140 (143)
T 2kb3_A 130 I--GKFRLVFLAG 140 (143)
T ss_dssp E--TTEEEEEEEC
T ss_pred E--CCEEEEEEeC
Confidence 8 5566655543
No 20
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=95.74 E-value=0.0084 Score=56.70 Aligned_cols=73 Identities=27% Similarity=0.427 Sum_probs=54.9
Q ss_pred CCCCcccCCCCCccccC---CCccccccccccceeEEEecCCccEEEEeecCCcEEEeeCCcccccCcccccccccCCcc
Q 006900 20 NSLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRKKLSSNEHVSIADGDII 96 (626)
Q Consensus 20 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 96 (626)
++--.++|..+..+||| ++|++.|..+||+|.+|+...++..-.+...+|.+.|+ +.| +. ++.+.++|+|
T Consensus 75 g~g~~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~~~~~l~DlgStNGT~VN--G~~--i~---~~~L~~GD~I 147 (157)
T 3oun_A 75 GSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVN--NAP--VQ---EWQLADGDVI 147 (157)
T ss_dssp TTCCEEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEET--TEE--CS---EEECCTTCEE
T ss_pred CCCeEEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEECCEEEEEECCCCCCeEEC--CEE--Cc---eEECCCCCEE
Confidence 34567899999999999 47999999999999999997555333344468999885 222 32 4678899988
Q ss_pred ccc
Q 006900 97 ELI 99 (626)
Q Consensus 97 ~~~ 99 (626)
.+=
T Consensus 148 ~lG 150 (157)
T 3oun_A 148 RLG 150 (157)
T ss_dssp EET
T ss_pred EEC
Confidence 874
No 21
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=95.65 E-value=0.034 Score=50.95 Aligned_cols=95 Identities=22% Similarity=0.233 Sum_probs=68.7
Q ss_pred eeeEeeCCCCccCCCCCCcccCC-CCCccccCC---Cccccccc----cccceeEEEecCCccEEEEe-ecCCcEEEeeC
Q 006900 6 IGYLVPLDNNLREDNSLPKLPLS-QGPNVIGRT---NIPVSDKR----LSRKHITLTASADGSASLVV-DGTNPVVVKSG 76 (626)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 76 (626)
.-+|+...++. ..++|. .+.-+|||+ +|.+.|.. +||.|.+|....+|.+.|.= ..+|-..|+.
T Consensus 9 ~w~l~~~G~~~------~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg- 81 (138)
T 2pie_A 9 SWCLRRVGMSA------GWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNR- 81 (138)
T ss_dssp EEEEEETTCSS------CBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETT-
T ss_pred cEEEEEeCCCC------CEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcCCCcEEEEECCCCCCeEECC-
Confidence 33566655443 367887 456799995 68899988 99999999997788776644 4699998863
Q ss_pred CcccccCcccccccccCCcccccCC-----Cccceeeee
Q 006900 77 DQRKKLSSNEHVSIADGDIIELIPG-----HHFFKYVTL 110 (626)
Q Consensus 77 ~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~ 110 (626)
+++.....+.+.+||+|.+=.. ..-|.|+..
T Consensus 82 ---~~l~~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~ 117 (138)
T 2pie_A 82 ---ARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVT 117 (138)
T ss_dssp ---EECCTTCCEECCTTCEEEESCCCTTCSSCSEEEEEE
T ss_pred ---EEcCCCCcEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 4566666778999999999662 234555554
No 22
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=95.55 E-value=0.016 Score=55.90 Aligned_cols=96 Identities=24% Similarity=0.344 Sum_probs=65.5
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCC--ccccCC---CccccccccccceeEEEecC--C------------ccEEEEee
Q 006900 6 IGYLVPLDNNLREDNSLPKLPLSQGP--NVIGRT---NIPVSDKRLSRKHITLTASA--D------------GSASLVVD 66 (626)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~ 66 (626)
...|.|+..... -..|+|..|. .+|||+ +|++.|..+||.|..|+... + |.+.|.=-
T Consensus 29 ~l~L~~~~~~~~----~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~Dl 104 (182)
T 1qu5_A 29 FLTLKPLPDSII----QESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT 104 (182)
T ss_dssp CEEECCCTTSSS----CSCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCC
T ss_pred EEEEEeCCCCCc----ceEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEEC
Confidence 344555554322 2578898887 899997 69999999999999999764 1 33323212
Q ss_pred cCCcEEEeeCCcccccCcccccccccCCcccc---cCCCccceeee
Q 006900 67 GTNPVVVKSGDQRKKLSSNEHVSIADGDIIEL---IPGHHFFKYVT 109 (626)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~ 109 (626)
.+|-.-|+ + +++.....+.+.+||+|.+ ..|...+.|..
T Consensus 105 StNGT~VN--g--~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 146 (182)
T 1qu5_A 105 GTNVSYLN--N--NRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKV 146 (182)
T ss_dssp SSSCCEET--T--EECCSSEEEECCTTBCCEEEEEGGGTEEEECCE
T ss_pred CcCCeEEC--C--EEcCCCcceEcCCCCEEEEEEcCCCCEEEEEEE
Confidence 67777775 2 3566666678999999999 44666555544
No 23
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=95.42 E-value=0.016 Score=54.88 Aligned_cols=78 Identities=23% Similarity=0.381 Sum_probs=57.4
Q ss_pred CcccCCCCCccccCC---CccccccccccceeEEEecCCccEEEE-eecCCcEEEeeCCcccccCcccccccccCCcccc
Q 006900 23 PKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLV-VDGTNPVVVKSGDQRKKLSSNEHVSIADGDIIEL 98 (626)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 98 (626)
..++|..+..+|||+ +|++.|..+||+|..|.... |.+.|. ...+|-..|+ +.| +. ++.+.+||.|.+
T Consensus 68 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~-~~~~l~DlgS~NGT~VN--g~~--i~---~~~L~~GD~I~i 139 (162)
T 2kfu_A 68 SRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLEN-NEFNVVDVGSLNGTYVN--REP--VD---SAVLANGDEVQI 139 (162)
T ss_dssp CEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEET-TEEEEECCCCSSCEEET--TBC--CS---EEECCSSCEEEE
T ss_pred eEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEEC-CEEEEEECCCCCCeEEC--CEE--cc---eEECCCCCEEEE
Confidence 467888889999996 79999999999999999964 444443 3358999885 332 33 467999999988
Q ss_pred cCCCccceeeee
Q 006900 99 IPGHHFFKYVTL 110 (626)
Q Consensus 99 ~~~~~~~~~~~~ 110 (626)
|..-+.|...
T Consensus 140 --G~~~l~f~~~ 149 (162)
T 2kfu_A 140 --GKFRLVFLTG 149 (162)
T ss_dssp --TTEEEEEECS
T ss_pred --CCEEEEEEeC
Confidence 5555555443
No 24
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=95.37 E-value=0.012 Score=53.13 Aligned_cols=94 Identities=26% Similarity=0.360 Sum_probs=66.7
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCccccCC---CccccccccccceeEEEecCCccEEEEee-cCCcEEEeeCCccc
Q 006900 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRK 80 (626)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (626)
..+.|+-+..+... -..++|..+..+|||+ +|.+.|..+||+|..|.... |.+.|.=- .+|.+.|+ +.+
T Consensus 11 ~~~~L~v~~~~~~~---g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~-~~~~l~Dl~S~nGt~vN--g~~- 83 (128)
T 1r21_A 11 PTRRLVTIKRSGVD---GPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHE-QEAILHNFSSTNPTQVN--GSV- 83 (128)
T ss_dssp CCEEEEEEEETTEE---EEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECS-SCEEECCCCSSSCCEET--TEE-
T ss_pred CceEEEEEeCCCCC---ceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEEC-CEEEEEECCCCCCEEEC--CEE-
Confidence 35677776643222 2358888899999995 79999999999999999974 55545444 48998884 222
Q ss_pred ccCcccccccccCCcccccCCCccceeeee
Q 006900 81 KLSSNEHVSIADGDIIELIPGHHFFKYVTL 110 (626)
Q Consensus 81 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 110 (626)
+. ..+.+.+||.|.+ |..-|.|...
T Consensus 84 -i~--~~~~L~~Gd~i~i--G~~~~~~~~~ 108 (128)
T 1r21_A 84 -ID--EPVRLKHGDVITI--IDRSFRYENE 108 (128)
T ss_dssp -CS--SCEECCTTEEEEC--SSCEEEEEEC
T ss_pred -CC--CcEEcCCCCEEEE--CCEEEEEEeC
Confidence 33 2467999999998 5666666554
No 25
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=95.14 E-value=0.044 Score=48.92 Aligned_cols=97 Identities=24% Similarity=0.360 Sum_probs=69.2
Q ss_pred cceeeEeeCCCCccCC-CCCCcccCCCCCccccC-----CCccccccccccceeEEEecCCccEEEEeec-CCcEEEeeC
Q 006900 4 TKIGYLVPLDNNLRED-NSLPKLPLSQGPNVIGR-----TNIPVSDKRLSRKHITLTASADGSASLVVDG-TNPVVVKSG 76 (626)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 76 (626)
....|||-|+.+-... ...-.++|..|..+||| ++|++.|..+||.|..|+.. +|.+.|.-.| +|.+-|+.
T Consensus 9 ~~~p~Lv~l~~d~~~s~~~~~~~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~-~~~~~l~dl~S~ngt~vNg- 86 (120)
T 1wln_A 9 EKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM-DGVVTVTPRSMDAETYVDG- 86 (120)
T ss_dssp GGCCEEEEECSSSCCCSSCCCEEECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES-SSCEEEEESCSSSCEEETS-
T ss_pred CCcCEEEEeCCChhhccCccEEEEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc-CCEEEEEECCCCCCEEECC-
Confidence 4567899888653221 11346889999999996 38999999999999999986 6666666665 89998853
Q ss_pred CcccccCcccccccccCCcccccCCCccceee
Q 006900 77 DQRKKLSSNEHVSIADGDIIELIPGHHFFKYV 108 (626)
Q Consensus 77 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 108 (626)
+| +. +.+.+.+||.|.+=.. +.|+|.
T Consensus 87 -~~--i~--~~~~L~~GD~I~iG~~-~~~~f~ 112 (120)
T 1wln_A 87 -QR--IS--ETTMLQSGMRLQFGTS-HVFKFV 112 (120)
T ss_dssp -CB--CS--SCEEECTTCEEEETTT-EEEEEE
T ss_pred -EE--cC--CCEECCCCCEEEECCc-eEEEEE
Confidence 22 32 3356889999887442 566554
No 26
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=95.12 E-value=0.026 Score=51.40 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=56.3
Q ss_pred CcccCCCCCccccCC---CccccccccccceeEEEecC--Ccc--EEEEe------ecCCcEEEeeCCcccccCcccccc
Q 006900 23 PKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASA--DGS--ASLVV------DGTNPVVVKSGDQRKKLSSNEHVS 89 (626)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 89 (626)
-.++|..+..+|||. +|++.|..+||+|.+|.... ||. ..|.= ..+|.+.|+ ++| +. ++.
T Consensus 23 ~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT~vN--g~~--i~---~~~ 95 (131)
T 3hx1_A 23 REVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMIN--GKK--VQ---EHI 95 (131)
T ss_dssp EEEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCEEET--TEE--ES---EEE
T ss_pred EEEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCceEEC--CEE--eE---eEE
Confidence 468888899999994 89999999999999998763 453 43322 268999884 333 32 267
Q ss_pred cccCCcccccCCCccceeeeecccccc
Q 006900 90 IADGDIIELIPGHHFFKYVTLSRSQKR 116 (626)
Q Consensus 90 i~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (626)
+.+||+|.+=.....| |....+..++
T Consensus 96 L~~GD~I~iG~~~~~~-~~~~~~d~~~ 121 (131)
T 3hx1_A 96 IQTGDEIVMGPQVSVR-YEYRRRDQFG 121 (131)
T ss_dssp CCTTCEEECSTTCEEE-EEEECC----
T ss_pred CCCCCEEEECCEEEEE-EEEecCCCCc
Confidence 9999999986554444 4444333333
No 27
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=95.11 E-value=0.031 Score=51.65 Aligned_cols=74 Identities=28% Similarity=0.359 Sum_probs=57.8
Q ss_pred CcccCCCCC-ccccCC---Cccccccc----cccceeEEEecCCccEEEE-eecCCcEEEeeCCcccccCcccccccccC
Q 006900 23 PKLPLSQGP-NVIGRT---NIPVSDKR----LSRKHITLTASADGSASLV-VDGTNPVVVKSGDQRKKLSSNEHVSIADG 93 (626)
Q Consensus 23 ~~~~~~~~~-~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (626)
..++|..+. -+|||+ +|.+.|.. +||+|..|+...+|...|. ...+|-..|+ .+++...+.+.+.+|
T Consensus 28 ~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vN----g~~i~~~~~~~L~~G 103 (145)
T 2csw_A 28 GWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLN----RARLEPLRVYSIHQG 103 (145)
T ss_dssp CBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECTTSCEEEEBSSCSSCEEES----SCBCCBTCCEECCSS
T ss_pred CeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcCCCeEEEEECCCCCCeEEC----CEECCCCccEECCCC
Confidence 367776665 489995 68888888 9999999999778866554 3588999886 234666667889999
Q ss_pred CcccccC
Q 006900 94 DIIELIP 100 (626)
Q Consensus 94 ~~~~~~~ 100 (626)
|+|.+=.
T Consensus 104 D~I~iG~ 110 (145)
T 2csw_A 104 DYIQLGV 110 (145)
T ss_dssp CCEEESC
T ss_pred CEEEECC
Confidence 9999976
No 28
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=95.06 E-value=0.027 Score=49.11 Aligned_cols=78 Identities=24% Similarity=0.488 Sum_probs=57.2
Q ss_pred CcccCCCCCc-cccCC----CccccccccccceeEEEecCCccEEEEe-ecCCcEEEeeCCcccccCcccccccccCCcc
Q 006900 23 PKLPLSQGPN-VIGRT----NIPVSDKRLSRKHITLTASADGSASLVV-DGTNPVVVKSGDQRKKLSSNEHVSIADGDII 96 (626)
Q Consensus 23 ~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 96 (626)
-.++|..|.. +|||+ +|++.|..+||+|.+|....+|...|.= ..+|...|+. + ++.. .+.+.+||.|
T Consensus 17 ~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng--~--~i~~--~~~L~~Gd~i 90 (106)
T 3gqs_A 17 AEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEG--R--KIEH--QSTLSANQVV 90 (106)
T ss_dssp CEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTTSCEEEEECSCSSCCEETT--E--ECSS--EEECCTTCCE
T ss_pred EEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCCCcEEEEECcCCCCeEECC--E--ECCC--CeECCCCCEE
Confidence 4688888876 79996 5899999999999999998777665543 4689888842 2 2322 3468999998
Q ss_pred cccCCCccceee
Q 006900 97 ELIPGHHFFKYV 108 (626)
Q Consensus 97 ~~~~~~~~~~~~ 108 (626)
.+ |..-++|.
T Consensus 91 ~~--G~~~~~~~ 100 (106)
T 3gqs_A 91 AL--GTTLFLLV 100 (106)
T ss_dssp EE--TTEEEEEE
T ss_pred EE--CCEEEEEE
Confidence 87 44555443
No 29
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=94.94 E-value=0.022 Score=53.85 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=63.6
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCC-----------CccccCC---Ccccccc-ccccceeEEEecCCccEEEEeecCCc
Q 006900 6 IGYLVPLDNNLREDNSLPKLPLSQG-----------PNVIGRT---NIPVSDK-RLSRKHITLTASADGSASLVVDGTNP 70 (626)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (626)
++.|+.+....+ ...++|..+ ..+|||+ +|++.|. ++||+|..|....+|...|.=-.+|-
T Consensus 33 ~~~L~v~~G~~~----g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~~g~~~l~DlS~NG 108 (164)
T 1g3g_A 33 VCRVICTTGQIP----IRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDISTNG 108 (164)
T ss_dssp CEEEECSSSSSC----CEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECSTTCEEEEECCSSC
T ss_pred cEEEEEecCCCC----CeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECCCCCEEEEECCCCC
Confidence 566776653322 224555544 7899994 6888886 79999999999767766655448999
Q ss_pred EEEeeCCcccccCcccccccccCCcccccCC
Q 006900 71 VVVKSGDQRKKLSSNEHVSIADGDIIELIPG 101 (626)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 101 (626)
..|+. +++.....+.+.+||+|.+=..
T Consensus 109 T~vNg----~~i~~~~~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 109 TWLNG----QKVEKNSNQLLSQGDEITVGVG 135 (164)
T ss_dssp EEETT----EEECTTEEEECCTTCEEEESCS
T ss_pred eEECC----EEcCCCCceEcCCCCEEEECCC
Confidence 98863 4566666678999999998765
No 30
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=94.48 E-value=0.044 Score=50.24 Aligned_cols=81 Identities=28% Similarity=0.391 Sum_probs=59.3
Q ss_pred cccCCCC-----CccccCC---CccccccccccceeEEEecCCc-cEEEEee-cCCcEEEeeCCcccccC--------cc
Q 006900 24 KLPLSQG-----PNVIGRT---NIPVSDKRLSRKHITLTASADG-SASLVVD-GTNPVVVKSGDQRKKLS--------SN 85 (626)
Q Consensus 24 ~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~--------~~ 85 (626)
.++|..| ..+|||+ +|.+.|..+||+|.+|+...++ .+.|.=- .+|-..|+. +++. +.
T Consensus 21 ~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~vNg----~~i~~~~~~~~~~~ 96 (139)
T 1mzk_A 21 QHAVNSTSSSKLPVKLGRVSPSDLALKDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNS----HSISHPDLGSRKWG 96 (139)
T ss_dssp EEEECTTCSTTCSEEEESSSSCSEECCCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEETT----EESSCCCTTTCCCC
T ss_pred EEEecCCCCccceEEeeCCCCCCEEeCCCCCChHHcEEEEECCCCEEEEEECCCCCCEEECC----EECcCcccccccCC
Confidence 5677776 5699994 7999999999999999999875 5555444 489888853 2233 34
Q ss_pred cccccccCCcccccCCCccceeeee
Q 006900 86 EHVSIADGDIIELIPGHHFFKYVTL 110 (626)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~~~~~~ 110 (626)
..+.+.+||+|.+ |..-+.|...
T Consensus 97 ~~~~L~~GD~I~i--G~~~~~~~~~ 119 (139)
T 1mzk_A 97 NPVELASDDIITL--GTTTKVYVRI 119 (139)
T ss_dssp CCEECCTTEEEEC--SSSCEEEEEE
T ss_pred ceEECCCCCEEEE--CCEEEEEEEc
Confidence 5678999999988 5666655444
No 31
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=94.29 E-value=0.053 Score=50.79 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=69.1
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCCccccCC------CccccccccccceeEEEecCCc----cEEEEeecCCcEEEee
Q 006900 6 IGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT------NIPVSDKRLSRKHITLTASADG----SASLVVDGTNPVVVKS 75 (626)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (626)
.-|||-||++....+- =-..|.+|..+|||. +|++.|..+||+|-.|+...++ .+.++...+|.+-|+.
T Consensus 38 ~PhLvnLn~Dp~ls~~-lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG 116 (154)
T 4ejq_A 38 TPHLVNLNEDPLMSEC-LLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNG 116 (154)
T ss_dssp SCEEEECCCCTTCSSE-EEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETT
T ss_pred CceEEEecCCcccCce-EEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceEECC
Confidence 4578888877643322 235788999999994 6999999999999999988764 4556667789988863
Q ss_pred CCcccccCcccccccccCCcccccCCCccceeee
Q 006900 76 GDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (626)
Q Consensus 76 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (626)
.| + ..++...+||.|.+= ..++|.|..
T Consensus 117 --~~--i--~~~~~L~~GD~I~~G-~~~~Frf~~ 143 (154)
T 4ejq_A 117 --KK--V--TEPSILRSGNRIIMG-KSHVFRFNH 143 (154)
T ss_dssp --EE--C--CSCEECCTTCEEEET-TTEEEEEEC
T ss_pred --EE--c--CCceECCCCCEEEEC-CcEEEEEcC
Confidence 22 3 234568899988773 246776654
No 32
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.60 E-value=0.058 Score=57.37 Aligned_cols=79 Identities=24% Similarity=0.413 Sum_probs=58.7
Q ss_pred CcccCCCCCccccCC---CccccccccccceeEEEecCCccEEEEeecCCcEEEeeCCcccccCcccccccccCCccccc
Q 006900 23 PKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELI 99 (626)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 99 (626)
..++|..+.++|||+ +|++.|..+||+|..|....++..-.+...+|...|+ +. ++. ..+.+.+||+|.+
T Consensus 299 ~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vn--g~--~i~--~~~~L~~gd~i~~- 371 (388)
T 2ff4_A 299 RGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQ--HE--RIR--SAVTLNDGDHIRI- 371 (388)
T ss_dssp CEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEET--TE--ECS--SEEEECTTCEEEE-
T ss_pred cEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEECCEEEEEECCCCCCeEEC--CE--ECC--CceECCCCCEEEE-
Confidence 468899999999995 7999999999999999997554433333568999885 32 232 4567999999988
Q ss_pred CCCccceeee
Q 006900 100 PGHHFFKYVT 109 (626)
Q Consensus 100 ~~~~~~~~~~ 109 (626)
|..-|.|..
T Consensus 372 -G~~~~~~~~ 380 (388)
T 2ff4_A 372 -CDHEFTFQI 380 (388)
T ss_dssp -TTEEEEEEC
T ss_pred -CCEEEEEEe
Confidence 445555543
No 33
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.045 Score=51.58 Aligned_cols=89 Identities=16% Similarity=0.285 Sum_probs=62.6
Q ss_pred EeeCCCCccCCCCCCcccCCCCCc-cccCC------------------CccccccccccceeEEEecCCc----cEEEEe
Q 006900 9 LVPLDNNLREDNSLPKLPLSQGPN-VIGRT------------------NIPVSDKRLSRKHITLTASADG----SASLVV 65 (626)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 65 (626)
|+.++.+.+.+..+..+.|..+.- +|||+ +|++.|..+||.|..|....++ -.-.+.
T Consensus 34 l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl 113 (158)
T 3els_A 34 LVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDL 113 (158)
T ss_dssp EEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEEC
T ss_pred EEEEeCCccCcccceEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeC
Confidence 555655554444677899988764 78995 6777889999999999988766 233344
Q ss_pred ecCCcEEEeeCCcccccCcccccccccCCcccccCC
Q 006900 66 DGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPG 101 (626)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 101 (626)
..+|-.-|+. +++.....+.+.+||+|.+=..
T Consensus 114 ~StNGT~VNg----~ri~~~~~~~L~~GD~I~~G~s 145 (158)
T 3els_A 114 DSSNGTCLNN----VVIPGARYIELRSGDVLTLSEF 145 (158)
T ss_dssp SCSSCCEETT----EECCTTCCEECCTTEEEESSSC
T ss_pred CCCCccEECC----EEcCCCceEEcCCCCEEEECCC
Confidence 5688888752 3455555567889998887543
No 34
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=92.89 E-value=0.085 Score=48.00 Aligned_cols=83 Identities=14% Similarity=0.245 Sum_probs=54.3
Q ss_pred CCcccCCCCC-ccccC---CCccccccccccceeEEEe-----------cCCccEEEEeecCCcEEEeeCCcccccCccc
Q 006900 22 LPKLPLSQGP-NVIGR---TNIPVSDKRLSRKHITLTA-----------SADGSASLVVDGTNPVVVKSGDQRKKLSSNE 86 (626)
Q Consensus 22 ~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (626)
+..++|.+.+ =+||| ++|++.|..+||+|-.|.- ..++-.-.+..-+|-.-|+ + +++.+..
T Consensus 32 ~~~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vN--g--~ri~~~~ 107 (130)
T 4h87_A 32 LGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLN--K--TRIPPRT 107 (130)
T ss_dssp EEEEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEET--T--EECCTTC
T ss_pred eeeEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEEC--C--EECCCCc
Confidence 4467776655 47999 5799999999999999952 1222222333456666663 2 3566666
Q ss_pred ccccccCCcccccCCCccceeeee
Q 006900 87 HVSIADGDIIELIPGHHFFKYVTL 110 (626)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~~~~~ 110 (626)
.+.+.+||+|.+ |..-..|+..
T Consensus 108 ~~~L~~GD~I~~--G~str~yvl~ 129 (130)
T 4h87_A 108 YCRVHVGHVVRF--GGSTRLFILQ 129 (130)
T ss_dssp CEECCTTCEEEE--TTCSEEEEEE
T ss_pred eeECCCCCEEEE--CCceEEEEEc
Confidence 677999999987 5444445543
No 35
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=92.55 E-value=0.24 Score=47.75 Aligned_cols=97 Identities=19% Similarity=0.294 Sum_probs=69.2
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCccccCC------CccccccccccceeEEEecC----CccEEEEeecCCcEEEe
Q 006900 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT------NIPVSDKRLSRKHITLTASA----DGSASLVVDGTNPVVVK 74 (626)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 74 (626)
..-|||-||++....+.+ -..|.+|...|||. +|++..-.+++.|-.++... +|.+.|.....+.+-|+
T Consensus 67 ~~PhLvnLn~Dp~ls~~l-~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VN 145 (184)
T 4egx_A 67 KTPHLVNLNEDPLMSECL-LYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVN 145 (184)
T ss_dssp SSCEEEECCCCTTCSSCS-EEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCEEET
T ss_pred CCceEEeccCCcccCceE-EEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCeEEEc
Confidence 456999999887655443 56788999999995 59999999999999999875 45576776667777776
Q ss_pred eCCcccccCcccccccccCCcccccCCCccceeee
Q 006900 75 SGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (626)
Q Consensus 75 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (626)
. .+ + .+++...+||.|-+ =.+|+|.|..
T Consensus 146 G--~~--I--~~~~~L~~GDrI~l-G~~h~Frfn~ 173 (184)
T 4egx_A 146 G--KK--V--TEPSILRSGNRIIM-GKSHVFRFNH 173 (184)
T ss_dssp T--EE--C--CSCEECCTTCEEEE-TTTEEEEEEC
T ss_pred C--EE--c--cccEEcCCCCEEEE-CCCCEEEECC
Confidence 4 11 2 12345667777744 3567886654
No 36
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=92.00 E-value=0.14 Score=54.42 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=55.9
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCccccC---CCcccccc---------ccccceeEEEecC--Cc--cEEEEeecC
Q 006900 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGR---TNIPVSDK---------RLSRKHITLTASA--DG--SASLVVDGT 68 (626)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~--~~--~~~~~~~~~ 68 (626)
..|.|++++.+.. .|+|.++.++||| .++++.|. ++||+|..|.... ++ .+.|.--.+
T Consensus 9 ~~g~l~~~~~~~~------~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~ 82 (419)
T 3i6u_A 9 PWARLWALQDGFA------NLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSG 82 (419)
T ss_dssp CSEEEEECSSSSC------CEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCS
T ss_pred CceEeeecCCCCC------ceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCc
Confidence 4799999988663 7899999999999 67888885 4599999996542 22 133443456
Q ss_pred CcEEEeeCCcccccCcccccccccCCcccccC
Q 006900 69 NPVVVKSGDQRKKLSSNEHVSIADGDIIELIP 100 (626)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 100 (626)
|-..|.. .++....+..+.++|.+.+-.
T Consensus 83 nGt~vn~----~~~~~~~~~~l~~~d~i~~~~ 110 (419)
T 3i6u_A 83 NGTFVNT----ELVGKGKRRPLNNNSEIALSL 110 (419)
T ss_dssp SCEEETT----EECCTTCEEECCTTEEEEESS
T ss_pred CCceECc----ccccCCCcccCCCCCEeeeec
Confidence 7776643 122222333445555554433
No 37
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=90.00 E-value=0.34 Score=47.64 Aligned_cols=90 Identities=16% Similarity=0.272 Sum_probs=61.0
Q ss_pred EeeCCCCccCCCCCCcccCCCC-CccccCC------------------CccccccccccceeEEEecCCc----cEEEEe
Q 006900 9 LVPLDNNLREDNSLPKLPLSQG-PNVIGRT------------------NIPVSDKRLSRKHITLTASADG----SASLVV 65 (626)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 65 (626)
|.-++.+.+.+..+..++|.++ .=+|||+ +|++.|..+||.|..|....++ -.-.+.
T Consensus 81 L~v~k~g~k~~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DL 160 (205)
T 3elv_A 81 LVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDL 160 (205)
T ss_dssp EEEEEGGGCTTCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEEC
T ss_pred EEEEeCCCcccccceEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeC
Confidence 3334333333345778999764 4699995 8999999999999999876544 122334
Q ss_pred ecCCcEEEeeCCcccccCcccccccccCCcccccCCC
Q 006900 66 DGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGH 102 (626)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 102 (626)
.-+|-.-|+. +++.+...+.+.+||+|.+=...
T Consensus 161 gStNGTfVNG----~rI~~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 161 DSSNGTCLNN----VVIPGARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp SCSSCCEETT----EECCBTSCEECCTTCEEESSSSG
T ss_pred CCCCCCeECC----EECCCCceeECCCCCEEEECCCC
Confidence 4677777752 34666655679999999886544
No 38
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=78.58 E-value=1.3 Score=40.14 Aligned_cols=49 Identities=27% Similarity=0.538 Sum_probs=39.7
Q ss_pred cccCCCCCccccCC----CccccccccccceeEEEecCCccEEEEeecCCcEEEe
Q 006900 24 KLPLSQGPNVIGRT----NIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVK 74 (626)
Q Consensus 24 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (626)
.++|.+|.=+||.+ +|++.|..+||.|..|....+|.. |. ...|+..|.
T Consensus 18 ~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g~~-L~-~s~ngt~vd 70 (123)
T 4a0e_A 18 EVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIR-LT-DSAEPLLQE 70 (123)
T ss_dssp EEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTEEE-EE-EESSCCEET
T ss_pred EEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCeEE-EE-eccCCEEEC
Confidence 46777888889985 699999999999999999877765 53 777777664
No 39
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=73.38 E-value=2.8 Score=37.56 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCCCccceeEEEEeCCceEEEEeCCCCCcccc-ccccceEEeec
Q 006900 251 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDW-NNKSQGLWMQD 293 (626)
Q Consensus 251 ~fGthHSKmmLL~y~dglRVVI~TANLi~~DW-~~~tQ~vW~qD 293 (626)
+.+.+|+|++|. |+-.++|.|+|+..... .+.+.++.+.+
T Consensus 89 ~~~~~H~K~~ii---D~~~~~iGS~N~~~~~~~~n~E~~~~i~~ 129 (155)
T 1byr_A 89 NFPIQHDKVIIV---DNVTVETGSFNFTKAAETKNSENAVVIWN 129 (155)
T ss_dssp SSSCCCCCEEEE---TTTEEEEESCCBSHHHHHTSCEEEEEEES
T ss_pred CcccccceEEEE---CCCEEEEECCCCCccccccCcccEEEEcC
Confidence 357899999998 78889999999987533 24455666554
No 40
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=48.17 E-value=5.8 Score=41.36 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=28.4
Q ss_pred cccCCCCCccccCCC------ccccccccccceeEEEec
Q 006900 24 KLPLSQGPNVIGRTN------IPVSDKRLSRKHITLTAS 56 (626)
Q Consensus 24 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 56 (626)
++.|..|.-+|||.+ |++.|+-+||+|.+|+..
T Consensus 15 r~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~ 53 (325)
T 3huf_A 15 SRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTIL 53 (325)
T ss_dssp CEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEEC
T ss_pred EEEecCCeEEECCCCCccCceeecCCCCccccceEEEEe
Confidence 577788889999984 478999999999999886
No 41
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=46.49 E-value=13 Score=35.43 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=30.2
Q ss_pred CCCCccceeEEEEeCCceEEEEeCCCCCccccc-cccceEEeec
Q 006900 251 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 293 (626)
Q Consensus 251 ~fGthHSKmmLL~y~dglRVVI~TANLi~~DW~-~~tQ~vW~qD 293 (626)
+.|.+|.|+||. |+-.+++.|+|++..-+. +.+.++.+.|
T Consensus 119 ~~~~~H~K~~vi---D~~~~~~GS~N~t~~~~~~n~E~~~~i~~ 159 (196)
T 4ggj_A 119 DLGYMHHKFAIV---DKKVLITGSLNWTTQAIQNNRENVLIMED 159 (196)
T ss_dssp SSSCCCCEEEEE---TTTEEEEESCCBCHHHHHHCCEEEEEECC
T ss_pred ccccccCcEEEE---cceEEEecCccCChhhhcccceeEEEEEC
Confidence 568899999999 888899999999865443 3455665543
No 42
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=40.25 E-value=20 Score=31.35 Aligned_cols=66 Identities=26% Similarity=0.347 Sum_probs=42.7
Q ss_pred CCcccCCCCCc-cccCC---CccccccccccceeEEEecCCccEEEEeecCCc-EEEeeCCcccccCcccccccccCCcc
Q 006900 22 LPKLPLSQGPN-VIGRT---NIPVSDKRLSRKHITLTASADGSASLVVDGTNP-VVVKSGDQRKKLSSNEHVSIADGDII 96 (626)
Q Consensus 22 ~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 96 (626)
.|-+-|-.+.+ -|||+ ++.+.|+-+||.|-+|.-..+|..-+. -+|= |-|+ ++| + ..+.|.++|.|
T Consensus 12 ~p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G~~~l~--S~nGtVFVN--Gqr--v---~~~~I~~gDtI 82 (102)
T 3uv0_A 12 LPAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRGVVRLA--ALVGKIFVN--DQE--E---TVVDIGMENAV 82 (102)
T ss_dssp SCCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETTEEEEE--ESSSCEEET--TEE--E---SEEEECGGGCB
T ss_pred cccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCceEEEE--eccCcEEEC--CEE--e---eeEEccCCccc
Confidence 34454555555 38886 689999999999999999988887443 3333 3332 233 1 34457777764
No 43
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=40.17 E-value=22 Score=38.63 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=30.5
Q ss_pred CCCccceeEEEEeCCceEEEEeCCCCCccccccccceEEeec
Q 006900 252 FGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD 293 (626)
Q Consensus 252 fGthHSKmmLL~y~dglRVVI~TANLi~~DW~~~tQ~vW~qD 293 (626)
-+..|+|+|+. |+-.++|.|+||...-+. +-++.+.+
T Consensus 436 ~~~lHaK~~vv---D~~~~~vGS~N~d~rS~~--E~~l~i~~ 472 (506)
T 1v0w_A 436 PYAQHHKLVSV---DSSTFYIGSKNLYPSWLQ--DFGYIVES 472 (506)
T ss_dssp CCCBCCEEEEE---TTTEEEEESCCSSCCCSB--CEEEEEEC
T ss_pred cccceEEEEEE---CCcEEEEeCCCCCCcchh--hceeEecC
Confidence 45899999998 788899999999887774 56777765
No 44
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=25.29 E-value=36 Score=36.92 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=32.3
Q ss_pred CCCCccceeEEEEeCCceEEEEeCCCCCccccc-cccceEEeec
Q 006900 251 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 293 (626)
Q Consensus 251 ~fGthHSKmmLL~y~dglRVVI~TANLi~~DW~-~~tQ~vW~qD 293 (626)
..|.+|+|+|++ |+-.++|.|+||.+.-+. +.+.++.+.|
T Consensus 359 ~~~~lHaK~~vv---D~~~~~vGS~N~d~RS~~lN~E~~~~i~~ 399 (458)
T 3hsi_A 359 GDNTYHLKGVWV---DDRYILLTGNNLNPRAWRLDAENGLLIYD 399 (458)
T ss_dssp TTBEECCCEEEE---TTTEEEEECCCCSHHHHHTCEEEEEEEEC
T ss_pred CCCceeEEEEEE---CCeEEEecCCCCCcchhhhCceeEEEEeC
Confidence 468999999999 677899999999987664 3467777775
No 45
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=20.94 E-value=65 Score=32.67 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=31.7
Q ss_pred CCCCccceeEEEEeCCceEEEEeCCCCCccccccccceEEee
Q 006900 251 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQ 292 (626)
Q Consensus 251 ~fGthHSKmmLL~y~dglRVVI~TANLi~~DW~~~tQ~vW~q 292 (626)
.--.+|+|..+.+-.+|.-+||.|+||+-. .+.|-|=++
T Consensus 100 rkRi~HaK~Yg~~~n~g~~LIV~SgNfT~p---GmsQNvE~s 138 (358)
T 2c1l_A 100 RKRILHAKLYGTSNNLGESLVVSSGNFTGP---GMSQNIEAS 138 (358)
T ss_dssp CSSCBCCEEEEEEETTEEEEEEESCCBSTT---TTTTSBEEE
T ss_pred eeeecchhhhcccCCCceEEEEecCCcccc---ccccceeEE
Confidence 566789999999999999999999999976 445544444
Done!