BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006901
(626 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQY|C Chain C, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
pdb|4DQY|F Chain F, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
Length = 506
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 215/510 (42%), Positives = 308/510 (60%), Gaps = 20/510 (3%)
Query: 121 CKDEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQL 180
K EK +K T KG A +DP ++ S HV +K ++ A L ++ N +Y +QL
Sbjct: 1 MKSEKRMKLTLKGGAAVDP--DSGLEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQL 58
Query: 181 LESDGGGEYMVYNRWGRVG-MKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFT 239
LE D Y ++ WGRVG + G +K+ + +D AI F + + KT N W + + FT
Sbjct: 59 LEDDKENRYWIFRSWGRVGTVIGSNKLEQMPSKED-AIEHFMKLYEEKTGNAW-HSKNFT 116
Query: 240 SYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQP-RNTKLEPCVAKFISLICNISMMKQ 298
YPK + LE+DY Q EE+V + + P +KL V I +I ++ MK+
Sbjct: 117 KYPKKFYPLEIDYG--QDEEAV------KKLTVNPGTKSKLPKPVQDLIKMIFDVESMKK 168
Query: 299 LMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVI-HPPDRRKLEELSGEFYTVIPHDF 357
M+E + K+PLGKLSK I Y +L + + ++ +LS FYT+IPHDF
Sbjct: 169 AMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDF 228
Query: 358 GFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQA-DPLYSHYQRLHCQLT 416
G KK +++ ++ K EM++ L +IEVA LL ++ + DP+ +Y++L +
Sbjct: 229 GMKKPP--LLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIK 286
Query: 417 PLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKFSNSKNRMLLWH 476
++ DS E +I Y+ NTHA TH+AY ++++ IF++EREGE +R++ F NR LLWH
Sbjct: 287 VVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWH 346
Query: 477 GSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLC 536
GSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+ S G++LL
Sbjct: 347 GSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLG 406
Query: 537 EVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNS 596
EVALG+M EL +A++ KLP GK S KG+G+T PDP A DGV VPLG +
Sbjct: 407 EVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDP-SANISLDGVDVPLGTGISSGVN 464
Query: 597 KGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 626
LLYNEYIVY + Q+ ++Y++++ F +K
Sbjct: 465 DTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 494
>pdb|1GS0|A Chain A, Crystal Structure Of The Catalytic Fragment Of Murine Poly
(Adp-Ribose) Polymerase-2
pdb|1GS0|B Chain B, Crystal Structure Of The Catalytic Fragment Of Murine Poly
(Adp-Ribose) Polymerase-2
Length = 351
Score = 341 bits (875), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 179/353 (50%), Positives = 241/353 (68%), Gaps = 9/353 (2%)
Query: 277 TKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHP 336
++L+ V + + LICN+ M+++M+E+ Y+ + PLGKL+ + I GY LK+I D I
Sbjct: 2 SQLDLRVQELLKLICNVQTMEEMMIEMKYDTKRAPLGKLTVAQIKAGYQSLKKIEDCIRA 61
Query: 337 PDR-RKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLED 395
R L E EFYT IPHDFG VI T ++L K++++EALG+IE+A KL++
Sbjct: 62 GQHGRALVEACNEFYTRIPHDFGLSI--PPVIRTEKELSDKVKLLEALGDIEIALKLVKS 119
Query: 396 DTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVER 455
+ + PL HY+ LHC L PL+ +S EF +I+ YL +THA TH Y++ ++ +F VE+
Sbjct: 120 ERQGLEHPLDQHYRNLHCALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEVEK 179
Query: 456 EGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMF 515
EGE E FR+ + NRMLLWHGSRL+NW GILS GLR+APPEAP TGYMFGKG+YFADM
Sbjct: 180 EGEKEAFRE--DLPNRMLLWHGSRLSNWVGILSHGLRVAPPEAPITGYMFGKGIYFADMS 237
Query: 516 SKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLE 575
SKSANYC+AS G+LLL EVALG +ELL AN A L GK STKG+G+ AP P
Sbjct: 238 SKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAQGLLRGKHSTKGMGKMAPSPAH 297
Query: 576 AETLEDGVIVPLGKPKEQ--LNSKGHLL-YNEYIVYSVDQIRMRYVVQVNFKY 625
TL +G VPLG + LN +G+ L YNE+IVYS +Q+RMRY++++ F +
Sbjct: 298 FITL-NGSTVPLGPASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQFNF 349
>pdb|3KCZ|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzamide
pdb|3KCZ|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzamide
pdb|3KJD|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor Abt-888
pdb|3KJD|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor Abt-888
Length = 368
Score = 330 bits (847), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 180/347 (51%), Positives = 237/347 (68%), Gaps = 9/347 (2%)
Query: 283 VAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDR-RK 341
V + I LICN+ M+++MME+ YN K PLGKL+ + I GY LK+I D I R
Sbjct: 27 VQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQHGRA 86
Query: 342 LEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQA 401
L E EFYT IPHDFG + +I T ++L K++++EALG+IE+A KL++ + +
Sbjct: 87 LMEACNEFYTRIPHDFGLRTPP--LIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSPE 144
Query: 402 DPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETER 461
PL HY+ LHC L PL+ +S EF +I+ YL +THA THS Y++ ++ +F VE++GE E
Sbjct: 145 HPLDQHYRNLHCALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGEKEA 204
Query: 462 FRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANY 521
FR+ + NRMLLWHGSR++NW GILS GLRIA PEAP TGYMFGKG+YFADM SKSANY
Sbjct: 205 FRE--DLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYFADMSSKSANY 262
Query: 522 CYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLED 581
C+AS G+LLL EVALG +ELL AN A+ L GK STKG+G+ AP TL +
Sbjct: 263 CFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTL-N 321
Query: 582 GVIVPLGKPKEQ--LNSKGHLL-YNEYIVYSVDQIRMRYVVQVNFKY 625
G VPLG + LN G+ L YNEYIVY+ +Q+RMRY+++V F +
Sbjct: 322 GSTVPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFNF 368
>pdb|1UK0|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase With A Novel Inhibitor
pdb|1UK0|B Chain B, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase With A Novel Inhibitor
pdb|1UK1|A Chain A, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase
Complexed With A Potent Inhibitor
pdb|1UK1|B Chain B, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase
Complexed With A Potent Inhibitor
pdb|1WOK|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|1WOK|B Chain B, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|1WOK|C Chain C, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|1WOK|D Chain D, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|2RCW|A Chain A, Parp Complexed With A620223
Length = 350
Score = 311 bits (798), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 229/352 (65%), Gaps = 6/352 (1%)
Query: 277 TKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVI-H 335
+KL V I +I ++ MK+ M+E + K+PLGKLSK I Y +L + +
Sbjct: 2 SKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQ 61
Query: 336 PPDRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLED 395
++ +LS FYT+IPHDFG KK +++ ++ K+EM++ L +IEVA LL
Sbjct: 62 GSSDSQILDLSNRFYTLIPHDFGMKKPP--LLNNADSVQAKVEMLDNLLDIEVAYSLLRG 119
Query: 396 DTEIQA-DPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVE 454
++ + DP+ +Y++L + ++ DS E +I Y+ NTHA TH+AY ++++ IF++E
Sbjct: 120 GSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIE 179
Query: 455 REGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADM 514
REGE +R++ F NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM
Sbjct: 180 REGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADM 239
Query: 515 FSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPL 574
SKSANYC+ S G++LL EVALG+M EL +A++ KLP GK S KG+G+T PDP
Sbjct: 240 VSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDP- 297
Query: 575 EAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 626
A DGV VPLG + LLYNEYIVY + Q+ ++Y++++ F +K
Sbjct: 298 SANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 349
>pdb|2RD6|A Chain A, Parp Complexed With A861695
pdb|3GJW|A Chain A, Parp Complexed With A968427
pdb|3GN7|A Chain A, Parp Complexed With A861696
pdb|3L3M|A Chain A, Parp Complexed With A927929
pdb|3L3L|A Chain A, Parp Complexed With A906894
Length = 350
Score = 310 bits (795), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 228/352 (64%), Gaps = 6/352 (1%)
Query: 277 TKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVI-H 335
+KL V I +I ++ MK+ M+E + K+PLGKLSK I Y +L + +
Sbjct: 2 SKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQ 61
Query: 336 PPDRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLED 395
++ +LS FYT+IPHDFG KK +++ ++ K EM++ L +IEVA LL
Sbjct: 62 GSSDSQILDLSNRFYTLIPHDFGMKKPP--LLNNADSVQAKAEMLDNLLDIEVAYSLLRG 119
Query: 396 DTEIQA-DPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVE 454
++ + DP+ +Y++L + ++ DS E +I Y+ NTHA TH+AY ++++ IF++E
Sbjct: 120 GSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIE 179
Query: 455 REGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADM 514
REGE +R++ F NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM
Sbjct: 180 REGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADM 239
Query: 515 FSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPL 574
SKSANYC+ S G++LL EVALG+M EL +A++ KLP GK S KG+G+T PDP
Sbjct: 240 VSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDP- 297
Query: 575 EAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 626
A DGV VPLG + LLYNEYIVY + Q+ ++Y++++ F +K
Sbjct: 298 SANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 349
>pdb|1EFY|A Chain A, Crystal Structure Of The Catalytic Fragment Of Poly (Adp-
Ribose) Polymerase Complexed With A Benzimidazole
Inhibitor
Length = 350
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 230/352 (65%), Gaps = 6/352 (1%)
Query: 277 TKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHP 336
+KL + I +I ++ MK+ M+E + K+PLGKLSK I Y +L + +
Sbjct: 2 SKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSD 61
Query: 337 P-DRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLED 395
++ +LS FYT+IPHDFG KK ++ + ++ K++M++ L +IEVA LL
Sbjct: 62 GGSESQILDLSNRFYTLIPHDFGMKKPP--LLSNLEYIQAKVQMLDNLLDIEVAYSLLRG 119
Query: 396 DTEI-QADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVE 454
E DP+ +Y++L + ++ DS E +I Y+ NTHA TH+AY + +V+IFR+E
Sbjct: 120 GNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIE 179
Query: 455 REGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADM 514
REGE++R++ F NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM
Sbjct: 180 REGESQRYKPFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADM 239
Query: 515 FSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPL 574
SKSANYC+ S + G++LL EVALG+M EL A++ KLP GK S KG+G+TAPDP
Sbjct: 240 VSKSANYCHTSQADPIGLILLGEVALGNMYELKNASH-ITKLPKGKHSVKGLGKTAPDPT 298
Query: 575 EAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 626
TL DGV VPLG + LLYNEYIVY V Q+ ++Y++++ F YK
Sbjct: 299 ATTTL-DGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 349
>pdb|1A26|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With Carba-Nad
pdb|1PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 3,4-Dihydro-5-Methyl-Isoquinolinone
pdb|2PAW|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
pdb|2PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 4-Amino-1,8-Naphthalimide
pdb|3PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 3-Methoxybenzamide
pdb|4PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With
8-Hydroxy-2-Methyl-3-Hydro-Quinazolin-4-One
Length = 361
Score = 300 bits (767), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 230/352 (65%), Gaps = 6/352 (1%)
Query: 277 TKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHP 336
+KL + I +I ++ MK+ M+E + K+PLGKLSK I Y +L + +
Sbjct: 10 SKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSD 69
Query: 337 P-DRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLED 395
++ +LS FYT+IPHDFG KK ++ + ++ K++M++ L +IEVA LL
Sbjct: 70 GGSESQILDLSNRFYTLIPHDFGMKKPP--LLSNLEYIQAKVQMLDNLLDIEVAYSLLRG 127
Query: 396 DTEI-QADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVE 454
E DP+ +Y++L + ++ DS E +I Y+ NTHA TH+AY + +V+IFR+E
Sbjct: 128 GNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIE 187
Query: 455 REGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADM 514
REGE++R++ F NR LLWHGSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM
Sbjct: 188 REGESQRYKPFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADM 247
Query: 515 FSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPL 574
SKSANYC+ S + G++LL EVALG+M EL A++ KLP GK S KG+G+TAPDP
Sbjct: 248 VSKSANYCHTSQADPIGLILLGEVALGNMYELKNASH-ITKLPKGKHSVKGLGKTAPDPT 306
Query: 575 EAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 626
TL DGV VPLG + LLYNEYIVY V Q+ ++Y++++ F YK
Sbjct: 307 ATTTL-DGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 357
>pdb|3C49|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor Ku0058948
pdb|3C4H|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor Dr2313
pdb|3CE0|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor Pj34
pdb|3FHB|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzoic Acid
Length = 357
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 187/365 (51%), Gaps = 26/365 (7%)
Query: 272 IQPRNTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIA 331
+QP L+P K I+ I + M K M + + K+PLGKLSK I +G++ L+ +
Sbjct: 5 VQP--CSLDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALE 62
Query: 332 DVIHPPDR--RKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVA 389
+ + P + LEELS FYTVIPH+FG + I++P+ L+ K +M+ L +IE+A
Sbjct: 63 EALKGPTDGGQSLEELSSHFYTVIPHNFGHSQPPP--INSPELLQAKKDMLLVLADIELA 120
Query: 390 TKLL-----EDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYS 444
L E E PL YQ L CQL L+ + E+ +I YL +T S +
Sbjct: 121 QALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKVIQTYL----EQTGSNHR 176
Query: 445 VDIVQ-IFRVEREGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGY 503
+Q I++V +EGE +RF+ S NR LLWHG+ + IL+ GLRI P +G
Sbjct: 177 CPTLQHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRI----MPHSGG 232
Query: 504 MFGKGVYFADMFSKSANYCYASPSAT--AGVLLLCEVALGDMSELLYANYDADKLPDGKL 561
GKG+YFA SKSA Y G + L EVALG + N P G
Sbjct: 233 RVGKGIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGFD 292
Query: 562 STKGVGQTAPDPLEAETLE-DG--VIVPLGKPKEQLN-SKGHLLYNEYIVYSVDQIRMRY 617
S G T PDP + LE DG V+VP G+P S +EY++Y Q R+RY
Sbjct: 293 SVIARGHTEPDPTQDTELELDGQQVVVPQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRY 352
Query: 618 VVQVN 622
+++V+
Sbjct: 353 LLEVH 357
>pdb|2EOC|A Chain A, Solution Structure Of The Wgr Domain From Human Poly [adp-
Ribose] Polymerase-3
Length = 124
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 137 LDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWG 196
+DP P V++ Y+ LNQTN+ +NNNKFY+IQLL+ D + +NRWG
Sbjct: 15 VDPTCPLSSNPGTQVYED----YNCTLNQTNIENNNNKFYIIQLLQ-DSNRFFTCWNRWG 69
Query: 197 RVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEM 250
RVG GQ KI L+D A +FE+KF KTKN+W+ R F S+P YT +E+
Sbjct: 70 RVGEVGQSKINHFTRLED-AKKDFEKKFREKTKNNWAERDHFVSHPGKYTLIEV 122
>pdb|2CR9|A Chain A, Solution Structure Of Wgr Domain Of Poly(Adp-Ribose)
Polymerase-1
Length = 139
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 124 EKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLES 183
EK +K T KG A +DP ++ S HV +K ++ A L ++ N +Y +QLLE
Sbjct: 10 EKRMKLTLKGGAAVDP--DSGLEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLED 67
Query: 184 DGGGEYMVYNRWGRVG-MKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYP 242
D Y ++ WGRVG + G +K+ + +D AI F + + KT N W + + FT YP
Sbjct: 68 DKENRYWIFRSWGRVGTVIGSNKLEQMPSKED-AIEHFMKLYEEKTGNAW-HSKNFTKYP 125
Query: 243 KCYTWLEM 250
K + LE+
Sbjct: 126 KKFYPLEI 133
>pdb|4DVI|A Chain A, Crystal Structure Of Tankyrase 1 With Iwr2
pdb|4DVI|B Chain B, Crystal Structure Of Tankyrase 1 With Iwr2
pdb|4I9I|A Chain A, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|B Chain B, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|C Chain C, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|D Chain D, Crystal Structure Of Tankyrase 1 With Compound 4
Length = 217
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 59/166 (35%), Gaps = 47/166 (28%)
Query: 467 NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASP 526
N N +L+HGS N I+ +G G MFG G+YFA+ SKS Y Y
Sbjct: 72 NHHNERMLFHGSPFIN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIG 126
Query: 527 SATAGV-------------LLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDP 573
T +L C V LG S L ++ P G S
Sbjct: 127 GGTGCPTHKDRSCYICHRQMLFCRVTLGK-SFLQFSTMKMAHAPPGHHSV---------- 175
Query: 574 LEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVV 619
+G+P S L Y EY++Y +Q Y++
Sbjct: 176 -------------IGRP-----SVNGLAYAEYVIYRGEQAYPEYLI 203
>pdb|3UDD|A Chain A, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UDD|B Chain B, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UH2|A Chain A, Tankyrase-1 In Complexed With Pj34
pdb|3UH2|B Chain B, Tankyrase-1 In Complexed With Pj34
pdb|3UH4|A Chain A, Tankyrase-1 Complexed With Nvp-Xav939
pdb|3UH4|B Chain B, Tankyrase-1 Complexed With Nvp-Xav939
Length = 224
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 59/166 (35%), Gaps = 47/166 (28%)
Query: 467 NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASP 526
N N +L+HGS N I+ +G G MFG G+YFA+ SKS Y Y
Sbjct: 72 NHHNERMLFHGSPFIN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIG 126
Query: 527 SATAGV-------------LLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDP 573
T +L C V LG S L ++ P G S
Sbjct: 127 GGTGCPTHKDRSCYICHRQMLFCRVTLGK-SFLQFSTIKMAHAPPGHHSV---------- 175
Query: 574 LEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVV 619
+G+P S L Y EY++Y +Q Y++
Sbjct: 176 -------------IGRP-----SVNGLAYAEYVIYRGEQAYPEYLI 203
>pdb|2RF5|A Chain A, Crystal Structure Of Human Tankyrase 1- Catalytic Parp
Domain
Length = 258
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 59/166 (35%), Gaps = 47/166 (28%)
Query: 467 NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASP 526
N N +L+HGS N I+ +G G MFG G+YFA+ SKS Y Y
Sbjct: 108 NHHNERMLFHGSPFIN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIG 162
Query: 527 SATAGV-------------LLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDP 573
T +L C V LG S L ++ P G S
Sbjct: 163 GGTGCPTHKDRSCYICHRQMLFCRVTLGK-SFLQFSTIKMAHAPPGHHSV---------- 211
Query: 574 LEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVV 619
+G+P S L Y EY++Y +Q Y++
Sbjct: 212 -------------IGRP-----SVNGLAYAEYVIYRGEQAYPEYLI 239
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
2-(2-
Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol
Length = 223
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 43/112 (38%), Gaps = 19/112 (16%)
Query: 467 NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASP 526
N N +L+HGS N I+ +G G MFG G+YFA+ SKS Y Y
Sbjct: 72 NHANERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIG 126
Query: 527 SATAGV-------------LLLCEVALGDMSELLYANYDADKLPDGKLSTKG 565
T LL C V LG S L ++ P G S G
Sbjct: 127 GGTGCPVHKDRSCYICHRQLLFCRVTLGK-SFLQFSAMKMAHSPPGHHSVTG 177
>pdb|3KR7|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain
pdb|3KR8|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3KR8|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3MHJ|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3MHJ|B Chain B, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3P0N|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0N|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3U9H|A Chain A, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9H|B Chain B, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9Y|A Chain A, Crystal Structure Of Human Tankyrase 2 Catalytic Domain In
Complex With Olaparib
pdb|3UA9|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|3UA9|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|4AVU|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVU|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVW|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
pdb|4AVW|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
Length = 240
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 43/112 (38%), Gaps = 19/112 (16%)
Query: 467 NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASP 526
N N +L+HGS N I+ +G G MFG G+YFA+ SKS Y Y
Sbjct: 100 NHANERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIG 154
Query: 527 SATAGV-------------LLLCEVALGDMSELLYANYDADKLPDGKLSTKG 565
T LL C V LG S L ++ P G S G
Sbjct: 155 GGTGCPVHKDRSCYICHRQLLFCRVTLGK-SFLQFSAMKMAHSPPGHHSVTG 205
>pdb|4HKI|A Chain A, Tankyrase 2 In Complex With Flavone
pdb|4HKI|H Chain H, Tankyrase 2 In Complex With Flavone
pdb|4HKK|A Chain A, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKK|C Chain C, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKN|A Chain A, Complex Structure Of Human Tankyrase 2 With Luteolin
pdb|4HL5|A Chain A, Complex Structure Of Human Tankyrase 2 With 7-Hydroxy -4'-
Methoxyflavone
pdb|4HLF|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLF|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLG|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLG|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLH|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLK|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLK|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLM|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HLM|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HMH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
7,3-Dihydroxyflavone
Length = 191
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 18/88 (20%)
Query: 467 NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASP 526
N N +L+HGS N I+ +G G MFG G+YFA+ SKS Y Y
Sbjct: 100 NHANERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIG 154
Query: 527 SATAG-------------VLLLCEVALG 541
T LL C V LG
Sbjct: 155 GGTGCPVHKDRSCYICHRQLLFCRVTLG 182
>pdb|1ZRJ|A Chain A, Solution Structure Of The Sap Domain Of Human E1b-55kda-
Associated Protein 5 Isoform C
Length = 50
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 5 LKVDQLRAKLAQRGLSTAGTKAILVQRLEEAV 36
LKV++LR +L +RGL T G KA L +RL+ A+
Sbjct: 13 LKVNELREELQRRGLDTRGLKAELAERLQAAL 44
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 72 QMGVKQLREQADLRGLSKAGTKKELLERL 100
++ V +LRE+ RGL G K EL ERL
Sbjct: 12 RLKVNELREELQRRGLDTRGLKAELAERL 40
>pdb|2BX2|L Chain L, Catalytic Domain Of E. Coli Rnase E
pdb|2C0B|L Chain L, Catalytic Domain Of E. Coli Rnase E In Complex With 13-Mer
Rna
pdb|2C4R|L Chain L, Catalytic Domain Of E. Coli Rnase E
Length = 517
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 356 DFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQ 409
D+ + + + +ID P+ L+L + + ALG + ++K+ EI PL+SHYQ
Sbjct: 227 DYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI---PLFSHYQ 277
>pdb|2VMK|A Chain A, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|B Chain B, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|C Chain C, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|D Chain D, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
Length = 515
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 356 DFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQ 409
D+ + + + +ID P+ L+L + + ALG + ++K+ EI PL+SHYQ
Sbjct: 220 DYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI---PLFSHYQ 270
>pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|C Chain C, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|D Chain D, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
Length = 509
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 356 DFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQ 409
D+ + + + +ID P+ L+L + + ALG + ++K+ EI PL+SHYQ
Sbjct: 220 DYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI---PLFSHYQ 270
>pdb|2KVU|A Chain A, Solution Nmr Structure Of Sap Domain Of MklMYOCARDIN-Like
Protein 1 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr4547e
pdb|2KW9|A Chain A, Solution Nmr Structure Of Sap Domain Of MklMYOCARDIN-Like
P From H.Sapiens, Northeast Structural Genomics
Consortium Ta Hr4547e
Length = 75
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 73 MGVKQLREQADLRGLSKAGTKKELLERLCNHAEQ 106
M V +L+++ LR L +GTK EL+ERL + +Q
Sbjct: 29 MKVAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62
>pdb|3HKV|A Chain A, Human Poly(Adp-Ribose) Polymerase 10, Catalytic Fragment
In Complex With An Inhibitor 3-Aminobenzamide
pdb|3HKV|B Chain B, Human Poly(Adp-Ribose) Polymerase 10, Catalytic Fragment
In Complex With An Inhibitor 3-Aminobenzamide
Length = 217
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 444 SVDIVQIFRV-----EREGETERFRKFSNSKNR---MLLWHGSRLTNWTGILSQGLRIAP 495
S+ +V++ RV +++ E R R + R +L+HG+ I + G +
Sbjct: 40 SIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNRSF 99
Query: 496 PEAPATGYMFGKGVYFADMFSKSANYCYASPSATAG-VLLLCEVALGDMSE 545
AT ++GKGVYFA S S Y+ P+A + + V GD +
Sbjct: 100 CGRNAT--VYGKGVYFAKRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQ 148
>pdb|2ZKR|AA Chain a, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 257
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 297 KQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEFYTVIPHD 356
K+ + IG N LP+G + + TI+ + P DR KL SG + TVI H+
Sbjct: 92 KKAQLNIG---NVLPVGTMPEGTIVCCLEE--------KPGDRGKLARASGNYATVISHN 140
Query: 357 FGFKKMR 363
KK R
Sbjct: 141 PETKKTR 147
>pdb|3VUO|A Chain A, Crystal Structure Of Nontoxic Nonhemagglutinin
Subcomponent (Ntnha) From Clostridium Botulinum Serotype
D Strain 4947
Length = 1196
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 197 RVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQ 256
R+ K Q+ + +NL +N F ++F + + +SN + + YT MDY N
Sbjct: 319 RLKQKFQNSVQDIWNLN---LNYFSKEFNSIIPDRFSNALKHFYRKQYYT---MDYGDNY 372
Query: 257 KEESVVHEKPNSTINIQPRNTKLEPCVAKFISLI--CNISMMK 297
V+ + N+ + + +NT + K ++L+ NIS+MK
Sbjct: 373 NINGFVNGQINTKLPLSDKNTNIISKPEKVVNLVNANNISLMK 415
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,494,491
Number of Sequences: 62578
Number of extensions: 801966
Number of successful extensions: 2040
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1967
Number of HSP's gapped (non-prelim): 44
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)