Query 006901
Match_columns 626
No_of_seqs 366 out of 1057
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 16:06:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03124 poly [ADP-ribose] pol 100.0 1E-164 2E-169 1370.7 55.6 623 1-626 1-641 (643)
2 PLN03122 Poly [ADP-ribose] pol 100.0 1E-136 2E-141 1173.0 43.8 486 127-626 305-807 (815)
3 PLN03123 poly [ADP-ribose] pol 100.0 4E-133 1E-137 1163.1 47.2 482 124-626 487-980 (981)
4 cd01437 parp_like Poly(ADP-rib 100.0 8E-98 2E-102 790.7 32.4 344 276-622 1-347 (347)
5 KOG1037 NAD+ ADP-ribosyltransf 100.0 1.5E-70 3.2E-75 609.1 11.6 482 126-626 37-524 (531)
6 PF00644 PARP: Poly(ADP-ribose 100.0 1.1E-46 2.4E-51 374.2 14.1 206 411-623 1-206 (206)
7 cd01438 tankyrase_like Tankyra 100.0 1.1E-36 2.4E-41 303.4 17.3 180 410-623 13-220 (223)
8 PF02877 PARP_reg: Poly(ADP-ri 100.0 6.2E-36 1.3E-40 278.8 13.3 132 276-409 1-133 (133)
9 cd08003 WGR_PARP2_like WGR dom 100.0 5.8E-36 1.3E-40 266.7 12.2 102 150-252 1-103 (103)
10 cd08002 WGR_PARP3_like WGR dom 100.0 3.3E-33 7.1E-38 248.0 12.1 99 148-252 2-100 (100)
11 cd08001 WGR_PARP1_like WGR dom 100.0 3.9E-32 8.4E-37 243.1 12.6 103 149-252 1-104 (104)
12 cd07997 WGR_PARP WGR domain of 100.0 3.4E-30 7.4E-35 229.8 11.5 101 151-252 2-102 (102)
13 cd01439 TCCD_inducible_PARP_li 99.9 5E-26 1.1E-30 209.0 9.4 112 473-621 1-121 (121)
14 cd01341 ADP_ribosyl ADP_ribosy 99.9 1.3E-25 2.9E-30 210.4 8.4 120 473-617 1-137 (137)
15 smart00773 WGR Proposed nuclei 99.8 6.2E-21 1.4E-25 164.3 10.7 82 155-238 2-83 (84)
16 PF05406 WGR: WGR domain; Int 99.8 1.3E-20 2.8E-25 161.3 8.2 80 156-239 2-81 (81)
17 cd07994 WGR WGR domain. The WG 99.8 1.5E-18 3.4E-23 145.8 9.4 70 161-233 2-72 (73)
18 cd07996 WGR_MMR_like WGR domai 99.6 1E-14 2.2E-19 122.6 9.1 72 161-234 2-73 (74)
19 COG3831 Uncharacterized conser 98.9 2.9E-09 6.3E-14 91.2 8.0 74 159-239 1-74 (85)
20 PF02037 SAP: SAP domain; Int 98.7 2.7E-08 5.9E-13 72.1 4.6 34 3-36 2-35 (35)
21 smart00513 SAP Putative DNA-bi 98.4 3.8E-07 8.2E-12 66.1 4.1 34 3-36 2-35 (35)
22 KOG4259 Putative nucleic acid- 98.2 1.1E-06 2.3E-11 87.4 4.1 40 3-42 7-46 (260)
23 cd07998 WGR_DNA_ligase WGR dom 98.2 5.8E-06 1.3E-10 70.3 7.8 64 170-234 10-74 (77)
24 KOG4661 Hsp27-ERE-TATA-binding 97.8 1.2E-05 2.7E-10 88.7 3.3 41 3-43 31-71 (940)
25 PF02037 SAP: SAP domain; Int 96.1 0.0068 1.5E-07 44.0 3.5 33 70-102 1-33 (35)
26 PF12949 HeH: HeH/LEM domain; 95.1 0.02 4.4E-07 41.7 2.8 32 2-33 1-34 (35)
27 smart00513 SAP Putative DNA-bi 94.7 0.046 1E-06 39.5 3.8 32 71-102 2-33 (35)
28 KOG4246 Predicted DNA-binding 94.3 0.018 3.9E-07 66.8 1.5 42 2-43 646-687 (1194)
29 PF13151 DUF3990: Protein of u 82.2 1 2.2E-05 43.5 2.6 60 472-540 1-60 (154)
30 PF15633 Tox-ART-HYD1: HYD1 si 79.7 0.8 1.7E-05 40.9 0.9 40 474-515 1-40 (96)
31 KOG4177 Ankyrin [Cell wall/mem 78.3 0.65 1.4E-05 57.2 -0.1 137 420-566 966-1131(1143)
32 cd01436 Dipth_tox_like Mono-AD 67.9 4.4 9.6E-05 37.6 2.6 50 475-525 3-52 (147)
33 PRK00819 RNA 2'-phosphotransfe 65.6 3.2 6.9E-05 41.2 1.4 22 472-493 95-116 (179)
34 TIGR00578 ku70 ATP-dependent D 64.3 14 0.0003 43.1 6.5 37 67-103 546-582 (584)
35 PF07498 Rho_N: Rho terminatio 60.9 10 0.00022 28.7 3.1 34 69-102 1-36 (43)
36 KOG4259 Putative nucleic acid- 55.6 8.9 0.00019 39.2 2.5 38 67-104 3-40 (260)
37 PF01885 PTS_2-RNA: RNA 2'-pho 51.8 7.4 0.00016 38.7 1.3 34 471-514 105-138 (186)
38 PF07498 Rho_N: Rho terminatio 50.9 27 0.00059 26.4 4.0 33 4-36 4-38 (43)
39 TIGR00599 rad18 DNA repair pro 50.1 21 0.00045 39.8 4.6 34 4-37 268-301 (397)
40 KOG2416 Acinus (induces apopto 42.2 26 0.00057 40.6 3.8 37 2-39 13-49 (718)
41 PF13297 Telomere_Sde2_2: Telo 40.8 40 0.00086 27.7 3.6 28 6-33 16-43 (60)
42 PLN03124 poly [ADP-ribose] pol 38.3 11 0.00025 44.2 0.3 39 4-42 81-119 (643)
43 PF14164 YqzH: YqzH-like prote 36.8 50 0.0011 27.5 3.7 30 293-322 7-36 (64)
44 COG1859 KptA RNA:NAD 2'-phosph 36.5 21 0.00045 36.4 1.7 25 469-493 118-142 (211)
45 PF10208 Armet: Degradation ar 34.1 34 0.00074 33.2 2.7 23 2-24 104-126 (154)
46 smart00540 LEM in nuclear memb 33.1 78 0.0017 24.4 4.0 34 4-37 5-42 (44)
47 PTZ00315 2'-phosphotransferase 32.9 19 0.00042 41.9 1.0 22 472-493 477-499 (582)
48 PF09124 Endonuc-dimeris: T4 r 32.0 75 0.0016 25.6 3.9 34 3-36 14-49 (54)
49 PF07766 LETM1: LETM1-like pro 29.6 1.4E+02 0.003 31.4 6.6 81 4-103 170-251 (268)
50 PF08312 cwf21: cwf21 domain; 28.0 47 0.001 25.8 2.1 16 5-20 11-26 (46)
51 COG3797 Uncharacterized protei 26.7 87 0.0019 31.1 4.1 36 3-39 17-67 (178)
52 PF10281 Ish1: Putative stress 21.6 1.8E+02 0.0038 21.3 4.0 31 5-35 4-37 (38)
53 PF12509 DUF3715: Protein of u 21.5 1E+02 0.0022 30.2 3.5 79 482-565 41-125 (165)
54 TIGR02313 HpaI-NOT-DapA 2,4-di 20.9 1.7E+02 0.0036 31.0 5.4 52 279-330 233-289 (294)
55 KOG0287 Postreplication repair 20.5 1.2E+02 0.0027 33.1 4.1 33 5-37 251-283 (442)
No 1
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=1.1e-164 Score=1370.73 Aligned_cols=623 Identities=68% Similarity=1.090 Sum_probs=572.7
Q ss_pred CCCCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcc---------ccCCCccCCCCCCCCCCCCCccccchhhhc
Q 006901 1 MASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENK---------KSVGSKKRGRECDETDSNGSQKVKSIESFG 71 (626)
Q Consensus 1 ~~~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (626)
|++||||+|||+||++||||+.|+|++||.||++|+.+++. ..+..+.+.|..++...++++++++++++.
T Consensus 1 ~~~~~~v~~l~~~l~~~~~~~~g~k~~l~~rl~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (643)
T PLN03124 1 MANKLKVDELRAALAKRGLDTTGLKAALVRRLDDAIAEDAKTASKSGTKSSAGRKKRRERQDDGDDEPVSPKRIAIDEVK 80 (643)
T ss_pred CCccchhHHHHHHHHhcCCcccccchHHHHHHHhhhhhhhcccccccccccchhhccccccCCCcccccchhhhhhhhhc
Confidence 89999999999999999999999999999999999988772 112222244445555557789999999999
Q ss_pred ccCHHHHHHHHHhhCCCCCCchHHHHHHHhhcccCCCch---------hhhhHHhhhhccccceeeeeccCccccCCCCC
Q 006901 72 QMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQSDSK---------DTLLQEEVNECKDEKIVKATKKGAAVLDPWLP 142 (626)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~k~~~~vD~~~~ 142 (626)
+|+++++++.++.++.++.|+|.++.+|+|+..+.+.++ ++.+++.++.++.++++++++||+++||+.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~vD~~~~ 160 (643)
T PLN03124 81 GMTVRELREAASERGLATTGRKKDLLERLCAALESDVKVGSANGTGEDEKEKGGDEEREKEEKIVTATKKGRAVLDQWLP 160 (643)
T ss_pred ccccchhhHHHHHHhhhccccccchhhhccccccccccccccccccchhccccccccccccccceeeeeecccccCCCCC
Confidence 999999999999999999999999999998766553222 22233555667788999999999999999999
Q ss_pred ccccCceEEEEeCCeeEEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHH
Q 006901 143 EHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQ 222 (626)
Q Consensus 143 ~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~k~~~pf~s~e~Ai~~F~k 222 (626)
..+.+++|||++++.+|+|||+|||+++|+|+||+||||+++.++.|+||+||||||+.||+++.+||+++++|+.+|++
T Consensus 161 ~~~~~~~hVyed~g~iYda~Lnqtdi~~n~NkFY~iQlLe~d~~~~Y~v~~rWGRVG~~Gq~~l~~~~~sle~Ai~~F~k 240 (643)
T PLN03124 161 DHIKSNYHVLEEGDDVYDAMLNQTNVGDNNNKFYVLQVLESDDGSKYMVYTRWGRVGVKGQDKLHGPYDSREPAIREFEK 240 (643)
T ss_pred ccccCceEEEecCCeEEEEEEEccccCCCCcceEEEEEEEeCCCCeEEEEEEeCccCCcCcccccCCCCCHHHHHHHHHH
Confidence 87778999999999999999999999999999999999999888999999999999999999988789999999999999
Q ss_pred HHHHHhhcccccCCCCccCCCCceeeeecccccccchhhhccCCCCccCCCCCCCCCcHHHHHHHHHHcCHHHHHHHHHH
Q 006901 223 KFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEPCVAKFISLICNISMMKQLMME 302 (626)
Q Consensus 223 kF~eKTgn~W~~R~~F~~~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~skL~~~Vq~li~lI~d~~~m~~~m~e 302 (626)
+|++||||.|++|.+|+++||||+|||+||+.++++... . .......+..+|+|+++||+||++|||+++|+++|++
T Consensus 241 kF~eKTGN~W~~R~~F~k~pgKY~~ie~dy~~~~~~~~~--~-~~~~~~~~~~~skL~~~Vq~Li~lIfd~~~m~~~m~e 317 (643)
T PLN03124 241 KFYDKTKNHWSDRKNFISHPKKYTWLEMDYEDEEESKKD--K-PSVSSEDKNKQSKLDPRVAQFISLICDVSMMKQQMME 317 (643)
T ss_pred HHHHHhCCchhhcccccccCCceeEEEeecccccchhhh--c-cchhccccCCCCCCCHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999999999999999999999999999976543221 0 1111122334699999999999999999999999999
Q ss_pred hccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCChhHHHHhhhhccccccCCCCCCccccccCCCHHHHHHHHHHHHH
Q 006901 303 IGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEA 382 (626)
Q Consensus 303 ~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~~~l~~lsn~fYtlIPh~fg~~~~~~~vi~~~~~lk~k~~lle~ 382 (626)
|+||+.+|||||||++||.+||+||++|+++|+......+.+|||+|||+|||+||++.+|||+|||.++|++|++|||+
T Consensus 318 ~~~D~~KmPLGkLSk~qI~kgy~vL~ei~~~l~~~~~~~l~~lSn~FYTlIPH~FG~~~~~~~vIdt~~~lk~k~elLe~ 397 (643)
T PLN03124 318 IGYNARKLPLGKLSKSTILKGYEVLKRIAEVISRSDRETLEELSGEFYTVIPHDFGFKKMRQFTIDTPQKLKHKLEMVEA 397 (643)
T ss_pred cCCCcccCCCcccCHHHHHHHHHHHHHHHHHHcccchHHHHHHhcCeEEecCcccccCCCCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888778999999999999999999999888999999999999999999
Q ss_pred HHhHHHHHHHhhhhccccCCChhHHHhccCcEEEEcCCCCHHHHHHHHHHhcccCCCCCCcccccceeEEEecchhhHHH
Q 006901 383 LGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERF 462 (626)
Q Consensus 383 L~dIeiA~~ll~~~~~~~~~Pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~th~~~~~~I~~IfrV~r~~e~~rF 462 (626)
|.|||+|++|++.......||||.+|++|+|+|+||+++|+||++|++|+.+||+++|..|+++|.+||+|+|.+|.+||
T Consensus 398 L~DIevA~~ll~~~~~~~~~pld~~Y~~L~c~i~pLd~~S~efk~I~~Yl~nT~~~th~~y~l~V~~If~V~R~~E~~rF 477 (643)
T PLN03124 398 LGEIEIATKLLKDDIGEQDDPLYAHYKRLNCELEPLDTDSEEFSMIAKYLENTHGQTHSGYTLEIVQIFKVSREGEDERF 477 (643)
T ss_pred HHHHHHHHHHHhhccCCCCCcHHHHHHHcCCeeEEcCCCCHHHHHHHHHHHhcCCCccCcCceeEEEEEEeccccchhhH
Confidence 99999999999877666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCceeEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeecccccccccccccCCCCCCceEEEEEEeeccc
Q 006901 463 RKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGD 542 (626)
Q Consensus 463 ~~~~~~~N~~LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~~Y~~~~~~~~~~~mlLceVaLGk 542 (626)
++|.+++|++|||||||.+||.|||++||+|+||++|.+|||||+||||||++|||++||+++.+++.++|||||||||+
T Consensus 478 ~~~~~~~Nr~LLWHGSr~~N~~gILs~GLriaPpea~~~GymfGkGIYFAd~~skSa~Yc~~~~~~~~g~llLceVaLG~ 557 (643)
T PLN03124 478 QKFSSTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYASAANPDGVLLLCEVALGD 557 (643)
T ss_pred HHhhccCCeEEEEcCCCcccHHHHHhccCccCCcccccccccccceeEecchhhhhhhhhhccCCCCeeEEEEEEEecCC
Confidence 99989999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred ceeeccccCCCCCCCCCCeeecccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeeCCceeeeeEEEEE
Q 006901 543 MSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVN 622 (626)
Q Consensus 543 ~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEyIVYd~~Qvr~rYLV~~k 622 (626)
+++++.++|++.++|+|+|||+|+|++.|||+++++++|||+||+|++++++...++|.||||||||++||||||||+|+
T Consensus 558 ~~el~~~~y~a~~~p~G~~S~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~~~~~~~~L~yNEYIVYd~~Qvr~rYLv~vk 637 (643)
T PLN03124 558 MNELLQADYNANKLPPGKLSTKGVGRTVPDPSEAKTLEDGVVVPLGKPVESPYSKGSLEYNEYIVYNVDQIRMRYVLQVK 637 (643)
T ss_pred cchhccCccccccCCCCceeEEeccCCCCCcccceecCCCeEeeCCccccCCCCCCccccCceEEechhHeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999887788999999999999999999999999
Q ss_pred EEeC
Q 006901 623 FKYK 626 (626)
Q Consensus 623 ~~~~ 626 (626)
|+|+
T Consensus 638 f~~~ 641 (643)
T PLN03124 638 FNYK 641 (643)
T ss_pred Eeec
Confidence 9996
No 2
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=9.7e-137 Score=1172.96 Aligned_cols=486 Identities=26% Similarity=0.471 Sum_probs=443.8
Q ss_pred eeeeccCccccCCCCCccccCceEEEEeCCeeEEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCc--
Q 006901 127 VKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQD-- 204 (626)
Q Consensus 127 ~~~~~k~~~~vD~~~~~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~-- 204 (626)
.++..+|+++||+.|+.. ...+|||++++.+|+|+|||||+++|+|+||+||||+++. +.|+||+||||||+.||.
T Consensus 305 ~~~k~k~~~~V~~~~~l~-~~~~~V~~~~~~iYd~~Lnqtd~~~n~NkfY~iQlL~~~~-~~y~~~~rWGRVG~~gq~~~ 382 (815)
T PLN03122 305 AELKLYGKRGVYKDSKLQ-EEGGKIFEKDGILYNCAFSICDLGRGLNEYCIMQLITVPD-SNLHLYYKKGRVGDDPNAEE 382 (815)
T ss_pred chhccccCcCCCcccccc-cCccEEEecCCeEeeeeeeeeeccCCCcceEEEEEEEcCC-CcEEEEeeecccCCcCCCcc
Confidence 345559999999988632 2689999999999999999999999999999999999876 689999999999998765
Q ss_pred eeecCCCCHHHHHHHHHHHHHHHhhcc---cccCCCCccCCCCceeeeecccccccchhhhccCCCCccCCCCCCCCCcH
Q 006901 205 KIFGPYNLQDTAINEFEQKFFAKTKNH---WSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEP 281 (626)
Q Consensus 205 k~~~pf~s~e~Ai~~F~kkF~eKTgn~---W~~R~~F~~~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~skL~~ 281 (626)
++. +|.++++|+.+|+++|++||||. |++|.+|+++||||+++++||+.+++.... ..........+|+|++
T Consensus 383 ~~~-~~~~~~~Ai~~F~kkF~eKTgn~~~~w~~r~~F~k~pgky~~id~d~~~~~~~~~~----~~~~~~~~~~~skL~~ 457 (815)
T PLN03122 383 RLE-EWEDVDAAIKEFVRLFEEITGNEFEPWEREKKFEKKRLKFYPIDMDDGVDVRAGGL----GLRQLGVAAAHCKLDP 457 (815)
T ss_pred ccC-CCCCHHHHHHHHHHHHHHHhCCCccccccccCccccCCCCceeecccccccccccc----chhhcccccCCCCCCH
Confidence 554 58899999999999999999997 888999999999999999999876543211 0000112234799999
Q ss_pred HHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCh------hHHHHhhhhccccccC
Q 006901 282 CVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDR------RKLEELSGEFYTVIPH 355 (626)
Q Consensus 282 ~Vq~li~lI~d~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~------~~l~~lsn~fYtlIPh 355 (626)
+||+||++|||+++|+++|++|+||+++|||||||+.||.+||+||++|+++|+++.. ..+.+|||+|||+|||
T Consensus 458 ~Vq~L~~lIfd~~~m~~~m~e~~~D~~kmPLGKLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~~~dlSnrfYTlIPh 537 (815)
T PLN03122 458 KVANFMKVLCSQEIYRYAMMEMGLDSPDLPMGMLSDFHLKRCEEVLLEFAEFVKSEKETGQKAEAMWLDFSNKWFSLVHS 537 (815)
T ss_pred HHHHHHHHHcCHHHHHHHHHHcCCCcccCCCCcCCHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhccceeccCC
Confidence 9999999999999999999999999999999999999999999999999999987521 4599999999999999
Q ss_pred CCCCCccccccCCCHHHHHHH-HHHHHHHHhHHHHHHHhhhhc-cccCCChhHHHhccCcEEEEcCCCCHHHHHHHHHHh
Q 006901 356 DFGFKKMRDFVIDTPQKLKLK-LEMVEALGEIEVATKLLEDDT-EIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLL 433 (626)
Q Consensus 356 ~fg~~~~~~~vi~~~~~lk~k-~~lle~L~dIeiA~~ll~~~~-~~~~~Pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~ 433 (626)
. +||+|++.+.|+++ ++|||+|.|||+|++|+++.. ....||||.+|++|+|+|+||+++|+||++|++|+.
T Consensus 538 ~------~ppvi~~~~~lk~k~~~mLe~L~DIeiA~~ll~~~~~~~~~~pLd~~Y~~L~~~i~pLd~~S~eyk~I~~Yl~ 611 (815)
T PLN03122 538 T------RPFVIRDIDELADHAASALETVRDINVASRLIGDMTGSTLDDPLSDRYKKLGCSISPVDKESDDYKMIVKYLE 611 (815)
T ss_pred C------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHHHHHhcCceEEEcCCCCHHHHHHHHHHH
Confidence 2 68999999999999 599999999999999997653 345899999999999999999999999999999999
Q ss_pred cccCCCC---CCcccccceeEEEecchhhHHHHhhcCCCCceeEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeee
Q 006901 434 NTHAKTH---SAYSVDIVQIFRVEREGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVY 510 (626)
Q Consensus 434 ~t~~~th---~~~~~~I~~IfrV~r~~e~~rF~~~~~~~N~~LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIY 510 (626)
+||++|| ..|+++|.+||+|+|.++ .||..|++++||+|||||||++||+|||+||||||||+||+||||||||||
T Consensus 612 nT~~~th~~~~~y~l~v~~IF~veR~ge-~rf~~~~~l~NR~LLWHGSR~tN~~gILsqGLRIAPPEAPvtGYMFGKGIY 690 (815)
T PLN03122 612 KTYEPVKVGDVSYSVSVENIFAVESSAG-PSLDEIKKLPNKVLLWCGTRSSNLLRHLAKGFLPAVCSLPVPGYMFGKAIV 690 (815)
T ss_pred hcCCCccccCcccceeEeEEEEeccCcc-ccchhhcCCCCceEEeccchhhhHHHHhhCCCccCCcccCCCCCccCCeeE
Confidence 9999999 578999999999999996 799999899999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCCCceEEEEEEeecccc-eeeccccCCCCCCCCCCeeecccCCcCCCCCCceeccCCeEecCCC
Q 006901 511 FADMFSKSANYCYASPSATAGVLLLCEVALGDM-SELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGK 589 (626)
Q Consensus 511 FAd~~sKS~~Y~~~~~~~~~~~mlLceVaLGk~-~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk 589 (626)
|||++||||+||+++.++++|+|||||||||++ ++++.+++++.++|+|+|||+|+|++.|||++.+++.|||+||+|+
T Consensus 691 FAD~~SKSAnYC~t~~~~~~GlLlLcEVALG~~~~el~~~~~~~~~~~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk 770 (815)
T PLN03122 691 CSDAAAEAARYGFTAVDRPEGFLVLAVASLGDEVLELTKPPEDVKSYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCGR 770 (815)
T ss_pred ecchhhhhhhhhccccCCCcceEEEEHhhcCchHHHhhcCchhhhccCCCCceeeecCCCcCCCccceecCCCeEEeCCC
Confidence 999999999999999889999999999999997 7999999888999999999999999999999999999999999999
Q ss_pred ccccCCCCccCcCceEEEeeCCceeeeeEEEEEEEeC
Q 006901 590 PKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 626 (626)
Q Consensus 590 ~~~~~~~~~~l~ynEyIVYd~~Qvr~rYLV~~k~~~~ 626 (626)
++++....++|.||||||||++||||||||+|+|+|+
T Consensus 771 ~~~~~~~~~~L~yNEYIVYDvaQvrirYL~~vkf~~~ 807 (815)
T PLN03122 771 LIPSEHKDSPLEYNEYAVYDPKQVSIRFLVGVKYEEK 807 (815)
T ss_pred CccCCCCCcccccCceEEEchhHEEEEEEEEEEeecc
Confidence 9998777789999999999999999999999999985
No 3
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=4.4e-133 Score=1163.09 Aligned_cols=482 Identities=41% Similarity=0.755 Sum_probs=448.4
Q ss_pred cceeeeeccCccccCCCCCccccCceEEEEeCCeeEEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeecccc--C
Q 006901 124 EKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGM--K 201 (626)
Q Consensus 124 ~~~~~~~~k~~~~vD~~~~~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~--~ 201 (626)
.+.+++..||+++||+.|+ +.+.+|||++++.+|+|+||+||+++|+|+||+||||+++.++.|+||+||||||+ .
T Consensus 487 ~~~~~~~~kg~~~Vd~~~~--~~~~~hVyed~g~iY~~~Ln~td~~~n~NkfY~iQLL~~~~~~~y~v~~rWGRVG~~~i 564 (981)
T PLN03123 487 SSMVTVKVKGRSAVHEASG--LQDTGHILEDGKSIYNTTLNMSDLSTGVNSYYILQIIEEDKGSDCYVFRKWGRVGNEKI 564 (981)
T ss_pred cccccccccCCccCCcccc--cccCceEEecCCeEeeeeEecccccCCCcceEEEEEEEeCCCCeEEEEEEecccCCccc
Confidence 3456677899999999865 45789999999999999999999999999999999999988899999999999997 3
Q ss_pred CCceeecCCCCHHHHHHHHHHHHHHHhhccc---ccCCCCccCCCCceeeeecccccccchhhhccCCCCccCCCCCCCC
Q 006901 202 GQDKIFGPYNLQDTAINEFEQKFFAKTKNHW---SNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTK 278 (626)
Q Consensus 202 Gq~k~~~pf~s~e~Ai~~F~kkF~eKTgn~W---~~R~~F~~~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~sk 278 (626)
||+++. +| ++++|+.+|+++|++||||.| ++|.+|+++||||++|++||+.++..... .....+|+
T Consensus 565 g~~~l~-~~-~~~~A~~~F~kkF~eKTgn~W~~~~~r~~F~k~pgKy~~ie~dy~~~~~~~~~---------~~~~~~sk 633 (981)
T PLN03123 565 GGNKLE-EM-SKSDAIHEFKRLFLEKTGNPWESWEQKTNFQKQPGKFYPLDIDYGVNEQPKKK---------AASGSKSN 633 (981)
T ss_pred CccccC-CC-CHHHHHHHHHHHHHHHhcCcccchhhcccccccCCceeEEEeecCcccchhhh---------cccCCcCC
Confidence 999975 56 799999999999999999998 68999999999999999999876543210 11233699
Q ss_pred CcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCh------hHHHHhhhhcccc
Q 006901 279 LEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDR------RKLEELSGEFYTV 352 (626)
Q Consensus 279 L~~~Vq~li~lI~d~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~------~~l~~lsn~fYtl 352 (626)
|+++||+||++|||+++|+++|++|+||+++||||+||++||.+||+||++|+++|+.... ..+.+|||+|||+
T Consensus 634 L~~~vq~L~klIfd~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~l~~lSn~fYtl 713 (981)
T PLN03123 634 LAPRLVELMKMLFDVETYRAAMMEFEINMSEMPLGKLSKANIQKGFEALTEIQNLLKENDQDPSIRESLLVDASNRFFTL 713 (981)
T ss_pred CCHHHHHHHHHHhCHHHHHHHHHHccCCcccCCCccccHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhccEec
Confidence 9999999999999999999999999999999999999999999999999999999976532 5699999999999
Q ss_pred ccCCCCCCccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhhccccCCChhHHHhccCcEEEEcCCCCHHHHHHHHHH
Q 006901 353 IPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYL 432 (626)
Q Consensus 353 IPh~fg~~~~~~~vi~~~~~lk~k~~lle~L~dIeiA~~ll~~~~~~~~~Pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~ 432 (626)
|||+ +||+|++.++|++|++|||+|.|||+|++|++... ...||||.+|++|+|+|+||+++|+||++|++|+
T Consensus 714 IPh~------~pp~I~~~~~ik~k~~lLe~L~dieiA~~ll~~~~-~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~Yl 786 (981)
T PLN03123 714 IPSI------HPHIIRDEDDLKSKVKMLEALQDIEIASRLVGFDV-DEDDSLDDKYKKLHCDISPLPHDSEDYKLIEKYL 786 (981)
T ss_pred CCCC------CCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC-cCCCchHHHHHhcCCeEEECCCCCHHHHHHHHHH
Confidence 9996 47899999999999999999999999999997653 4589999999999999999999999999999999
Q ss_pred hcccCCCCCCcccccceeEEEecchhhHHHHhhc-CCCCceeEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeec
Q 006901 433 LNTHAKTHSAYSVDIVQIFRVEREGETERFRKFS-NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYF 511 (626)
Q Consensus 433 ~~t~~~th~~~~~~I~~IfrV~r~~e~~rF~~~~-~~~N~~LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYF 511 (626)
.+||++||..|+++|.+||+|+|.+|.+||.+|. .++||+|||||||.+||+|||++|||||||+||++|||||+||||
T Consensus 787 ~nT~~~th~~y~l~v~~IF~v~r~gE~~rf~~~~~~~~Nr~LLwHGSr~~N~~gILs~GLriaPpeap~tGymfGkGIYF 866 (981)
T PLN03123 787 LTTHAPTHTDWSLELEEVFSLEREGEFDKYAPYKEKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYF 866 (981)
T ss_pred HhcCCCccccccceeeEEEEecccccccchhhHhhcCCCceEEEcCCCcccHHHHhhccCccCCccccccCccccceeEe
Confidence 9999999999999999999999999999999985 689999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCceEEEEEEeecccceeeccccCCCCCCCCCCeeecccCCcCCCCCCceeccCCeEecCCCcc
Q 006901 512 ADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPK 591 (626)
Q Consensus 512 Ad~~sKS~~Y~~~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~ 591 (626)
||++|||++||+++.++++|+|||||||||++++++.++| +.+||+|+|||+|+|++.|||++++++.|||+||+|+++
T Consensus 867 AD~~SKSanYc~~~~~~~~g~llLceVaLG~~~e~~~~~~-~~~~p~g~~S~~g~G~~~Pd~~~~~~~~dgv~vP~Gk~~ 945 (981)
T PLN03123 867 ADLVSKSAQYCYTDRKNPVGLMLLSEVALGEIYELKKAKY-MDKPPRGKHSTKGLGKTVPQESEFVKWRDDVVVPCGKPV 945 (981)
T ss_pred cchhhhhhhhhcccCCCCceEEEEEEEecCChhhhccccc-cccCCCCceeeeecCCCCCCcccceecCCceEeeCCCCc
Confidence 9999999999999888999999999999999999999988 588999999999999999999999999999999999999
Q ss_pred ccCCCCccCcCceEEEeeCCceeeeeEEEEEEEeC
Q 006901 592 EQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 626 (626)
Q Consensus 592 ~~~~~~~~l~ynEyIVYd~~Qvr~rYLV~~k~~~~ 626 (626)
+.....++|.||||||||++||||||||+|+|+|+
T Consensus 946 ~~~~~~~~L~yNEYIVYd~~Qvr~rYLv~vkf~~~ 980 (981)
T PLN03123 946 PSKVKASELMYNEYIVYNTAQVKLQFLLKVRFKHK 980 (981)
T ss_pred cCcccCCccccCceEEechhHEEEEEEEEEEeecc
Confidence 98777789999999999999999999999999996
No 4
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=100.00 E-value=8e-98 Score=790.66 Aligned_cols=344 Identities=58% Similarity=0.964 Sum_probs=329.5
Q ss_pred CCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCh--hHHHHhhhhccccc
Q 006901 276 NTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDR--RKLEELSGEFYTVI 353 (626)
Q Consensus 276 ~skL~~~Vq~li~lI~d~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~--~~l~~lsn~fYtlI 353 (626)
+|+|+++||+||++|||+++|+++|++|++|+++||||+||++||.+||+||++|+++|++... ..+.+|||+|||+|
T Consensus 1 ~skL~~~vq~l~~~I~d~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~~i~~~l~~~~~~~~~l~~ls~~FYtlI 80 (347)
T cd01437 1 KSKLDKPVQELIKLIFDVEMMKKAMTELKIDASKMPLGKLSKNQIQKGYEVLKEIEEALKRGSSQGSQLEELSNEFYTLI 80 (347)
T ss_pred CCCcCHHHHHHHHHHcCHHHHHHHHHHcCCCcccCCCcccCHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Confidence 3899999999999999999999999999999999999999999999999999999999988765 78999999999999
Q ss_pred cCCCCCCccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhhccccCCChhHHHhccCcEEEEcCCCCHHHHHHHHHHh
Q 006901 354 PHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLL 433 (626)
Q Consensus 354 Ph~fg~~~~~~~vi~~~~~lk~k~~lle~L~dIeiA~~ll~~~~~~~~~Pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~ 433 (626)
||+||++ +||+|+|.+.|++|++|||+|.||++|++|++.+.....||+|.+|++|+|+|++|+++|+||++|++||.
T Consensus 81 Ph~fg~~--~p~~i~~~~~l~~k~~lle~L~die~a~~l~~~~~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~y~~ 158 (347)
T cd01437 81 PHDFGMS--KPPVIDNEELLKAKRELLEALRDIEIASKLLKDDEDDSDDPLDANYEKLKCKIEPLDKDSEEYKIIEKYLK 158 (347)
T ss_pred CccccCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhHHHHcCeeEEECCCCChHHHHHHHHHH
Confidence 9999997 46899999999999999999999999999998776667899999999999999999999999999999999
Q ss_pred cccCCCCCCcccccceeEEEecchhhHHHHhhcCCCCceeEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeeccc
Q 006901 434 NTHAKTHSAYSVDIVQIFRVEREGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFAD 513 (626)
Q Consensus 434 ~t~~~th~~~~~~I~~IfrV~r~~e~~rF~~~~~~~N~~LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd 513 (626)
+||+++|. |+++|.+||+|+|.+++++|+++++.+|++|||||||.+||++||++||+++|++++.+|+|||+||||||
T Consensus 159 ~t~~~~~~-~~~~V~~If~i~r~~e~~~F~~~~~~~n~~lLwHGsr~~n~~~Il~~Gl~~~~~~~~~~g~mfGkGIYFAd 237 (347)
T cd01437 159 NTHAPTTE-YTVEVQEIFRVEREGETDRFKPFKKLGNRKLLWHGSRLTNFVGILSQGLRIAPPEAPVTGYMFGKGIYFAD 237 (347)
T ss_pred hcCCCCCC-cceeEEEEEEecCCCchhhhHHhhccCCeEEEEcCCChhhHHHHHhcCCCcCccccccCCccccceEeecC
Confidence 99998864 89999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCceEEEEEEeecccceeeccccCCCCCCCCCCeeecccCCcCCCCCCceeccCCeEecCCCcccc
Q 006901 514 MFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQ 593 (626)
Q Consensus 514 ~~sKS~~Y~~~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~ 593 (626)
++|||++||+++.+++.++||||+|+||+++++..+++++.+||+|+|||+|+|++.|||+++.+..|||+||+|++++.
T Consensus 238 ~~skS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~~p~g~~Sv~g~G~~~p~~~~~~~~~~gv~vP~G~~~~~ 317 (347)
T cd01437 238 MFSKSANYCHASASDPTGLLLLCEVALGKMNELKKADYMAKELPKGKHSVKGLGKTAPDPSEFEIDLDGVVVPLGKPVPS 317 (347)
T ss_pred chHhhhhhcccCCCCCceEEEEEEEecCceehhccCChhhccCCCCceeeEeccCCCCCchhheeccCCeEeeCCccccC
Confidence 99999999999887899999999999999999999999988899999999999999999999988899999999999987
Q ss_pred CCC-CccCcCceEEEeeCCceeeeeEEEEE
Q 006901 594 LNS-KGHLLYNEYIVYSVDQIRMRYVVQVN 622 (626)
Q Consensus 594 ~~~-~~~l~ynEyIVYd~~Qvr~rYLV~~k 622 (626)
... .++|.||||||||++||||||||+|+
T Consensus 318 ~~~~~~~l~~nEyiVYd~~Qir~rYLv~vk 347 (347)
T cd01437 318 GHKTDTSLLYNEYIVYDVAQVRLKYLLEVK 347 (347)
T ss_pred CcCCCcccccCCeEeechhHEEEEEEEEeC
Confidence 766 67999999999999999999999985
No 5
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-70 Score=609.10 Aligned_cols=482 Identities=40% Similarity=0.567 Sum_probs=423.4
Q ss_pred eeeeeccCccccCCCCCccccCceEEEEeCCeeEEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCce
Q 006901 126 IVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDK 205 (626)
Q Consensus 126 ~~~~~~k~~~~vD~~~~~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~k 205 (626)
++.+...+...+|++++.......++...+..+|...|+++++..++|+||.+|+++.+....+..|.+||||+..|++.
T Consensus 37 ik~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~v~~~~~s~ 116 (531)
T KOG1037|consen 37 IKELKLIFDGDVDKWKHTSCFLKKDHLIRGPEVKVPGLNQTNVENENNKEYTEEELEWDEQQKKRKTVEEGGVTGKGQSG 116 (531)
T ss_pred hhhhhhccccccCcccccccccCcccccccccccccccccccccccccchhhhhhhhcccccceeeeeeecccccccccc
Confidence 33344455556777666555456777888889999999999999999999999999987766889999999999999988
Q ss_pred eecCCCCHHHHHHHHHHHHHHHhhcccccCCCCccCCCCceeeeecccccccchhhhccCCCCccCCCCCCCCCcHHHHH
Q 006901 206 IFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEPCVAK 285 (626)
Q Consensus 206 ~~~pf~s~e~Ai~~F~kkF~eKTgn~W~~R~~F~~~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~skL~~~Vq~ 285 (626)
+.....+...|...|+.+|..+|.+.|++|..|+.++++|.+-+.... ..........++..+.|+..|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ld~~~~~ 187 (531)
T KOG1037|consen 117 IVKKSKSLDKAKKPFEIKSYKLTKNGMETRDEFIPLGHSYEEEDKKNF---------SKCRSCFSPIKTDSGRLDMSVKE 187 (531)
T ss_pred cchhhhhhhhccchhhhhcchhhhhhhhhhhhhhcccchhHHHhhhhh---------cccccccChhhcccccccccccc
Confidence 877667888999999999999999999999999999999933221110 01011111122223459999999
Q ss_pred HHHHHcCHHHHHHHHHHhccCCC-CCCCCCCcHHHHHHHHHHHHHHHHhcCCCCh-hHHHHhhhhccccccCCCCCCccc
Q 006901 286 FISLICNISMMKQLMMEIGYNAN-KLPLGKLSKSTILKGYDVLKRIADVIHPPDR-RKLEELSGEFYTVIPHDFGFKKMR 363 (626)
Q Consensus 286 li~lI~d~~~m~~~m~e~~~D~~-kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~-~~l~~lsn~fYtlIPh~fg~~~~~ 363 (626)
++.+||++++|..+|++|++|.. ++|+|++|+.||.++|++|..+.+++..... +.+.+++++||++|||+||+..+
T Consensus 188 ~~~~i~~~~~m~~~~~~~~~~~~l~~p~g~~s~~~i~~~~~~~~~~k~~~~~~~~~~~l~~~~~~f~~~ip~~~~~~~~- 266 (531)
T KOG1037|consen 188 LIKNIFDVEEMIKALMEMQLDHKLKKPLGKLSLNDINKAYELLLKVKEALKLGKIGEQLAKASTEFYTLIPHDFGMRKP- 266 (531)
T ss_pred cccccccHHHHHHHHHhhccchhhhCCCCccchhhhhhhhhhhhhhhcccccCCcHHHHHHHhhhhhhhcCCCCCcCCC-
Confidence 99999999999999999999999 9999999999999999999999999987754 55999999999999999998753
Q ss_pred cccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhhcc-cc-CCChhHHHhccCcEEEEcCCCCHHHHHHHHHHhcccCCCCC
Q 006901 364 DFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTE-IQ-ADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHS 441 (626)
Q Consensus 364 ~~vi~~~~~lk~k~~lle~L~dIeiA~~ll~~~~~-~~-~~Pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~th~ 441 (626)
++ .+.++|++|.+|++|+.+...... .. .+|++.+|+.|+|.+.+++.+++||++|.+|+.+||.++|.
T Consensus 267 -~~--------~~~~~le~~~~i~~a~~~~~~~~~~~~~~~Pl~~~y~~l~c~~~~~~~~~~e~kmi~~~~~~~~~~~~~ 337 (531)
T KOG1037|consen 267 -PN--------EKQEALEALLDIELAYGLRKGDDVDATCDDPLDKHYKDLKCKIEKLDKDSEEFKMIAQYVEKTHAKTST 337 (531)
T ss_pred -ch--------hhHHHHHHhhhhhhhhhhhhccccccCCCChhhhHHHhhhhhhccccccchhHHHHHHHHHhhccccCc
Confidence 22 789999999999999999876654 45 78999999999999999999999999999999999999998
Q ss_pred CcccccceeEEEecchhhHHHHhhcCCCCceeEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeeccccccccccc
Q 006901 442 AYSVDIVQIFRVEREGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANY 521 (626)
Q Consensus 442 ~~~~~I~~IfrV~r~~e~~rF~~~~~~~N~~LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~~Y 521 (626)
.+.+.+.+|+++.+..|..+|.......|+++|||||+.+|+++||+.|++++|++++++|+|||+|||||+++++|++|
T Consensus 338 ~~~~~~~~l~k~~~~~e~~~~~~~~~~~~r~llw~gs~~~n~a~~l~~g~~~~~~~~~~~g~~~gkgiyfa~~~sks~~y 417 (531)
T KOG1037|consen 338 VKVVQIADLKKVNEKNEADRKVDISELINRQLLWHGSRFGNLAGILSPGLRLAPSEAPVTGYMFGKGIYFADAASKSANY 417 (531)
T ss_pred cCceeehhHHHhhhcccccccccCcccccccchhcccceeeeeccccCCceecCCCCCceeeccccceEeeeeccccccc
Confidence 88888999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEEEEEeecccceeeccccCCCCCCCCCCeeecccCCcCCCCCCceeccCCeEecCCCccccCC--CCcc
Q 006901 522 CYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLN--SKGH 599 (626)
Q Consensus 522 ~~~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~~--~~~~ 599 (626)
|++....+.++||+|+|+||++..+..+.+....+|+|+|||+|+|++.|+++....+++++.+|+|.++.... ....
T Consensus 418 ~~~~~~k~~~~ll~~~~alg~~~~~~~~~~~~~~~~~~~~sv~~~g~~~p~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (531)
T KOG1037|consen 418 CVTMKGKPTGHLLLCDVALGKEQDLVESIPSLTELPAGKDSVKGVGKTAPDSTLSEDLEDDVDVPLGKIKLTEEPHKDSL 497 (531)
T ss_pred ccccccCchhhhhhhhhhccchhhhhcCCcccccCCCCCcchhhhcccCCCchhhcccccccccccccccccccccchhh
Confidence 99988889999999999999999999998888889999999999999999999999999999999998776553 4456
Q ss_pred CcCceEEEeeCCceeeeeEEEEEEEeC
Q 006901 600 LLYNEYIVYSVDQIRMRYVVQVNFKYK 626 (626)
Q Consensus 600 l~ynEyIVYd~~Qvr~rYLV~~k~~~~ 626 (626)
+.||||+||+++|++++||++++++|.
T Consensus 498 l~y~e~~v~~~~q~~~~~~~kv~~~~~ 524 (531)
T KOG1037|consen 498 LEYNEYIVYNVEQVQIRYLVKVKMDYS 524 (531)
T ss_pred hhhhhhhhccHhhhceeeeeEeehhhh
Confidence 779999999999999999999999873
No 6
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself. PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....
Probab=100.00 E-value=1.1e-46 Score=374.19 Aligned_cols=206 Identities=41% Similarity=0.614 Sum_probs=185.6
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHhcccCCCCCCcccccceeEEEecchhhHHHHhhcCCCCceeEEecCCCCCHHHHHhcC
Q 006901 411 LHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQG 490 (626)
Q Consensus 411 L~~~l~~L~~~s~Eyk~I~~y~~~t~~~th~~~~~~I~~IfrV~r~~e~~rF~~~~~~~N~~LLwHGTr~~N~~gIL~~G 490 (626)
|+|+|++|+++|+||+.|+++|.+++.+.|. +.++|.+||+|++..++++|..+++.+|+++|||||+.+|+.+||++|
T Consensus 1 L~~~l~~l~~~s~ey~~I~~~f~~~~~~~~~-~~~~I~~I~~i~~~~~~~~f~~~~~~~n~~~L~HGt~~~~~~~I~~~G 79 (206)
T PF00644_consen 1 LNCELVPLEPDSEEYKEIEKYFKKTWKPVHK-YKPKIKKIFRIQNPSLWERFEEKKKEGNERLLFHGTSAENICSILRNG 79 (206)
T ss_dssp TTEEEEEEETTSHHHHHHHHHHHHTSTSTTT-EEEEEEEEEEEEEHHHHHHHHHHHHSSSEEEEEEEETGGGHHHHHHHS
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHhHCCCCCC-CCCEEEEEEEEcChhHHHHHHHHHhcCCceEEeCCCChhhccchhcCC
Confidence 7999999999999999999999999987664 678999999999999999999887788999999999999999999999
Q ss_pred CCCCCCCCCCCcceeeeeeecccccccccccccCCCCCCceEEEEEEeecccceeeccccCCCCCCCCCCeeecccCCcC
Q 006901 491 LRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTA 570 (626)
Q Consensus 491 Lriap~ea~~tG~mfGkGIYFAd~~sKS~~Y~~~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~ 570 (626)
|+++++.++.+|.|||+|||||+++++|+.||.....++.++||||+|+||+++++...+. ...+|+|+|||+|.|+..
T Consensus 80 ~~~~~~~~~~~g~~fG~GiYfs~~~s~s~~Y~~~~~~~g~~~~llc~V~lG~~~~~~~~~~-~~~~~~g~~sv~~~~~~~ 158 (206)
T PF00644_consen 80 FKIDPRKASRNGGMFGKGIYFSDNSSKSAQYSKPSDSNGERFMLLCRVALGKPYELKNDNP-MTSPPPGYDSVKGVGSKT 158 (206)
T ss_dssp S---TTTSCGGCSTTSSSEEEBSSHHHHHTTSTSESSSSEEEEEEEEEEECSEEEESSCCT-GSSGCTTESEEEECESEE
T ss_pred CccCccccccCCceeeeEEEeCcchhhhcccCCCccCCcceeeeEEEEEeccceeeccCcc-cccccCCcceecCCCccC
Confidence 9998888889999999999999999999999998666789999999999999999999888 789999999999999887
Q ss_pred CCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeeCCceeeeeEEEEEE
Q 006901 571 PDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNF 623 (626)
Q Consensus 571 Pdp~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEyIVYd~~Qvr~rYLV~~k~ 623 (626)
| ...+..+| +|.|++.........+.+|||||||++|++|||||+|+|
T Consensus 159 ~---~~~~~~~g--~p~~~~~~~~~~~~~~~~~eyVVy~~~q~~p~YLi~y~~ 206 (206)
T PF00644_consen 159 P---EDTIDEDG--VPSGKGYVSEYDGSSLNPNEYVVYDNSQVYPEYLITYKF 206 (206)
T ss_dssp E---GGEEEETT--ETTSSEEESCEESSSSSCSEEEESSGGGEEEEEEEEEEE
T ss_pred C---ccccccCC--CCCCCCccCccCCCccCCCEEEEEcccceeeEEEEEEEC
Confidence 7 44556678 999988555555566999999999999999999999997
No 7
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT). Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
Probab=100.00 E-value=1.1e-36 Score=303.42 Aligned_cols=180 Identities=28% Similarity=0.433 Sum_probs=148.1
Q ss_pred ccCcEEEEcCCCCHHHHHHHHHHhcccCCCCCCc-------ccccceeEEEecchhhHHHHhh--------cCCCCceeE
Q 006901 410 RLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAY-------SVDIVQIFRVEREGETERFRKF--------SNSKNRMLL 474 (626)
Q Consensus 410 ~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~th~~~-------~~~I~~IfrV~r~~e~~rF~~~--------~~~~N~~LL 474 (626)
+.++.|..|.+++.||+.|++.|+.|.+..|.++ +.+|..|-||++...|++|..- .+..|+++|
T Consensus 13 ~~~~~~~~l~p~~~e~~~v~~~~~~t~~~~~~~~~~~~~~~~~~I~kI~RIQN~~Lw~~y~~kk~~~~~~~~~~~ne~~L 92 (223)
T cd01438 13 NQGTILLDLAPDDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNIIRIQKVVNKKLRERYCHRQKEIAEENHNHHNERML 92 (223)
T ss_pred CccceEEEecCCCchHHHHHHHHHhhccccccCcccccccccccEEEEEecCCHHHHHHHHHHHHHHHHhhCCCcceEEE
Confidence 5678899999999999999999999987544322 5789999999999999988642 246899999
Q ss_pred EecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeecccccccccccccCCC------CCC-------ceEEEEEEeecc
Q 006901 475 WHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASP------SAT-------AGVLLLCEVALG 541 (626)
Q Consensus 475 wHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~~Y~~~~~------~~~-------~~~mlLceVaLG 541 (626)
||||+..| +|+++||+... +.+|+|||+|||||+++|||++||++.. ..+ .++||||+|+||
T Consensus 93 fHGt~~~~--~I~~~GFd~r~---~~~g~~fGkGiYFA~~askS~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrVlLG 167 (223)
T cd01438 93 FHGSPFIN--AIIHKGFDERH---AYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRVTLG 167 (223)
T ss_pred eecCcchh--HHHHhCCCccc---cccCceeeeeeeeccchhhhccccccccccccCcccccccccccceeEEEEEEEec
Confidence 99999877 89999997542 2479999999999999999999998631 111 479999999999
Q ss_pred cceeeccccCCCCCCCCCCeeecccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeeCCceeeeeEEEE
Q 006901 542 DMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQV 621 (626)
Q Consensus 542 k~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEyIVYd~~Qvr~rYLV~~ 621 (626)
++.+...+++ ...+|+|+|||+|. |. .+.+.||||||||.+|++|+|||+|
T Consensus 168 k~~~~~~~~~-~~~~P~G~dSv~g~----Ps------------------------~~~~~~~EfVVyd~~Q~YPeYLI~y 218 (223)
T cd01438 168 KSFLQFSAMK-MAHAPPGHHSVIGR----PS------------------------VNGLAYAEYVIYRGEQAYPEYLITY 218 (223)
T ss_pred ceeeccCCcc-cCCCCCCCcceEcC----CC------------------------CCCcccCEEEEECCCcEeeEEEEEE
Confidence 9988776664 46789999999874 21 1246689999999999999999998
Q ss_pred EE
Q 006901 622 NF 623 (626)
Q Consensus 622 k~ 623 (626)
+.
T Consensus 219 ~~ 220 (223)
T cd01438 219 QI 220 (223)
T ss_pred Ee
Confidence 74
No 8
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The regulatory domain of the polymerase is almost always associated with the C-terminal catalytic domain (see IPR001290 from INTERPRO). This domain consists of a duplication of two helix-loop-helix structural repeats [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0006471 protein ADP-ribosylation; PDB: 1GS0_B 3FHB_A 3C49_A 3CE0_A 3C4H_A 3KCZ_B 3KJD_B 3L3M_A 3GJW_A 1UK1_A ....
Probab=100.00 E-value=6.2e-36 Score=278.80 Aligned_cols=132 Identities=51% Similarity=0.829 Sum_probs=116.7
Q ss_pred CCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCC-CChhHHHHhhhhcccccc
Q 006901 276 NTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHP-PDRRKLEELSGEFYTVIP 354 (626)
Q Consensus 276 ~skL~~~Vq~li~lI~d~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~-~~~~~l~~lsn~fYtlIP 354 (626)
+|+|+++||+||++|||+++|+++|.+++||+.+||||+||++||.+||+||++|+++|.. .....+.++||+|||+||
T Consensus 1 ~skL~~~Vq~Li~~If~~~~~~~~m~e~~~D~~kmPLGkLS~~qI~~g~~iL~~i~~~l~~~~~~~~i~~lsn~fYtlIP 80 (133)
T PF02877_consen 1 KSKLPPEVQDLIKLIFDVEMMKQAMKEMGYDTKKMPLGKLSKEQIEKGYEILKEIEELLKEQERRSKIEDLSNRFYTLIP 80 (133)
T ss_dssp --SSTHHHHHHHHHHT-HHHHHHHHHHTTB-TTTSTGGGB-HHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCchhcCHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHCC
Confidence 4899999999999999999999999999999999999999999999999999999999983 445899999999999999
Q ss_pred CCCCCCccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhhccccCCChhHHHh
Q 006901 355 HDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQ 409 (626)
Q Consensus 355 h~fg~~~~~~~vi~~~~~lk~k~~lle~L~dIeiA~~ll~~~~~~~~~Pld~~Y~ 409 (626)
|+||++ +||+|+|.+.|+++++||++|.||++|++++.++.....||+|++|+
T Consensus 81 h~fg~~--~~~~I~~~~~l~~k~~lle~L~die~A~~l~~~~~~~~~~plD~~Y~ 133 (133)
T PF02877_consen 81 HNFGRS--RPPVIDTEEKLKEKLELLEALLDIEIASKLLKDAQDEKINPLDYQYK 133 (133)
T ss_dssp B-STTS---S--STSHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCSSTHHHHHHH
T ss_pred CcccCC--CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhcC
Confidence 999986 57899999999999999999999999999999877666999999996
No 9
>cd08003 WGR_PARP2_like WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of human PARP-2 and similar proteins. Similar to PARP-1, PARP-2 is ubiquitously expressed and it
Probab=100.00 E-value=5.8e-36 Score=266.74 Aligned_cols=102 Identities=51% Similarity=0.876 Sum_probs=97.5
Q ss_pred EEEEeCCeeEEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCceeecCCC-CHHHHHHHHHHHHHHHh
Q 006901 150 HVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYN-LQDTAINEFEQKFFAKT 228 (626)
Q Consensus 150 ~V~~~~~~~Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~k~~~pf~-s~e~Ai~~F~kkF~eKT 228 (626)
|||++++.+|+|||+|||+++|+|+||+||||+++..+.|+||+||||||+.||+++.. |. ++++|+.+|+++|++||
T Consensus 1 hVy~~~~~vy~a~Ln~td~~~n~Nkfy~lQlle~~~~~~y~~~~rWGRVG~~G~~~l~~-~~~~l~~A~~~F~k~F~~KT 79 (103)
T cd08003 1 HVYEEGDDVYDAMLNQTNIQQNNNKYYIIQLLEDDAEKIYSVWFRWGRVGKKGQSSLVP-CGSDLEQAKSLFEKKFLDKT 79 (103)
T ss_pred CEEecCCeEEEEEEEecccCCCCcceEEEEEEEeCCCCeEEEEEeEccccccccceecc-CCCCHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999998888999999999999999999875 55 49999999999999999
Q ss_pred hcccccCCCCccCCCCceeeeecc
Q 006901 229 KNHWSNRRQFTSYPKCYTWLEMDY 252 (626)
Q Consensus 229 gn~W~~R~~F~~~pgKY~~ve~d~ 252 (626)
||.|++|.+|+++||||++|||||
T Consensus 80 gn~W~~R~~f~k~pgKY~~le~dy 103 (103)
T cd08003 80 KNEWEDRANFEKVAGKYDLLEMDY 103 (103)
T ss_pred CCchhhccCCCCCCCCceEEeecC
Confidence 999999999999999999999997
No 10
>cd08002 WGR_PARP3_like WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of human PARP-3 and similar proteins, including Arabidopsis thaliana PARP-
Probab=100.00 E-value=3.3e-33 Score=248.03 Aligned_cols=99 Identities=60% Similarity=0.992 Sum_probs=93.6
Q ss_pred ceEEEEeCCeeEEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHH
Q 006901 148 SYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAK 227 (626)
Q Consensus 148 ~~~V~~~~~~~Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~k~~~pf~s~e~Ai~~F~kkF~eK 227 (626)
.+|||+ +|+|+|++||+++|+|+||+||||+++ +.|+||++|||||+.||+++..+++++++|+++|+++|++|
T Consensus 2 ~~~~~~----~y~~~Ln~t~~~~n~NkfY~lQll~~~--~~y~v~~~WGRVG~~Gq~~~~~~~~~l~~A~~~F~k~F~~K 75 (100)
T cd08002 2 GAEVDE----DYDCMLNQTNIGHNNNKFYVIQLLESG--KEYYVWNRWGRVGEKGQNKLKGPWDSLEGAIKDFEKKFKDK 75 (100)
T ss_pred CcEEeE----EEEEEEEcccccCCCeeEEEEEEEecC--CEEEEEEEECccCCcCcceeccCCCCHHHHHHHHHHHHHHH
Confidence 578994 699999999999999999999999986 89999999999999999998876677999999999999999
Q ss_pred hhcccccCCCCccCCCCceeeeecc
Q 006901 228 TKNHWSNRRQFTSYPKCYTWLEMDY 252 (626)
Q Consensus 228 Tgn~W~~R~~F~~~pgKY~~ve~d~ 252 (626)
|||+|++|.+|+|+||||++||+||
T Consensus 76 Tgn~W~~R~~f~k~~gky~~ie~dy 100 (100)
T cd08002 76 TKNNWEDRENFVPHPGKYTLIEMDY 100 (100)
T ss_pred hCCchhhccCCCcCCCcceEEEecC
Confidence 9999999999999999999999997
No 11
>cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of vertebrate PARP-1 and similar proteins, including Arabidopsis thaliana
Probab=99.98 E-value=3.9e-32 Score=243.12 Aligned_cols=103 Identities=34% Similarity=0.667 Sum_probs=98.5
Q ss_pred eEEEEeCCeeEEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeecccc-CCCceeecCCCCHHHHHHHHHHHHHHH
Q 006901 149 YHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGM-KGQDKIFGPYNLQDTAINEFEQKFFAK 227 (626)
Q Consensus 149 ~~V~~~~~~~Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~-~Gq~k~~~pf~s~e~Ai~~F~kkF~eK 227 (626)
+|||++++.+|+|+|+++|+..|+|+||+||||+++.++.|+||++|||||+ .||+++. +|+++++|+++|+++|++|
T Consensus 1 ~~v~~~~~~~y~~~L~~~d~~~n~n~fY~lQll~~~~~~~y~~~~~WGRiG~~~Gq~~~~-~~~~~~~A~~~F~k~f~~K 79 (104)
T cd08001 1 AHVLEEGGNLYSAVLGLVDIQTGTNSYYKLQLLEHDKGNRYWVFRSWGRVGTTIGGNKLE-EFSSLEEAKMAFEELYEEK 79 (104)
T ss_pred CeEEeCCCcEEEEEEECcccCCCCcceEEEEEEEECCCCEEEEEEEECccCCccCceEcc-CCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999988899999999999999 5998865 6899999999999999999
Q ss_pred hhcccccCCCCccCCCCceeeeecc
Q 006901 228 TKNHWSNRRQFTSYPKCYTWLEMDY 252 (626)
Q Consensus 228 Tgn~W~~R~~F~~~pgKY~~ve~d~ 252 (626)
|||+|++|.+|+++||||++|++||
T Consensus 80 Tgn~w~~r~~f~k~~~ky~~~~~d~ 104 (104)
T cd08001 80 TGNDFENRKNFKKKPGKFYPLDIDY 104 (104)
T ss_pred hCCCCccccCCcccCCcEeEEEecC
Confidence 9999999999999999999999986
No 12
>cd07997 WGR_PARP WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins and histones. Higher eukaryotes contain several PARPs and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. Poly-ADP-ribosylation was thought to be a reversible post-translational covalent modification that serves as a regulator
Probab=99.96 E-value=3.4e-30 Score=229.81 Aligned_cols=101 Identities=49% Similarity=0.898 Sum_probs=93.3
Q ss_pred EEEeCCeeEEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHHhhc
Q 006901 151 VFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKN 230 (626)
Q Consensus 151 V~~~~~~~Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~k~~~pf~s~e~Ai~~F~kkF~eKTgn 230 (626)
|+.+.+.+|+|+|+++|++.|+|+||+|||++++..+.|+||++|||||..||+++. +|.++++|+++|+++|++||||
T Consensus 2 ~~~~~~~~y~~~L~~~d~~~n~n~fy~lql~~~~~~~~y~v~~~WGRVG~~Gq~~~~-~~~~~~~A~~~F~k~f~~Kt~~ 80 (102)
T cd07997 2 VYGDIATVYDATLNQTDISNNNNKFYKIQILESKGPNTYALFTRWGRVGERGQSQLT-PFGSLESAIKEFEKKFKDKTGN 80 (102)
T ss_pred cccccCcEEEEEEEeeccCCCCcceEEEEEEEcCCCCeEEEEEEEccCCCcCceeec-CCCCHHHHHHHHHHHHHHHHCC
Confidence 344433789999999999999999999999998777899999999999999999975 5899999999999999999999
Q ss_pred ccccCCCCccCCCCceeeeecc
Q 006901 231 HWSNRRQFTSYPKCYTWLEMDY 252 (626)
Q Consensus 231 ~W~~R~~F~~~pgKY~~ve~d~ 252 (626)
+|++|.+|.++||||++|++||
T Consensus 81 ~w~~r~~f~k~~~ky~~i~~d~ 102 (102)
T cd07997 81 EWENRPLFKKQPGKYALVELDY 102 (102)
T ss_pred ccccccccccCCCceeEEeecC
Confidence 9999999999999999999986
No 13
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=99.93 E-value=5e-26 Score=209.00 Aligned_cols=112 Identities=26% Similarity=0.337 Sum_probs=91.1
Q ss_pred eEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeecccccccccccccCCC-CCCceEEEEEEeecccceeeccccC
Q 006901 473 LLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASP-SATAGVLLLCEVALGDMSELLYANY 551 (626)
Q Consensus 473 LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~~Y~~~~~-~~~~~~mlLceVaLGk~~e~~~~~~ 551 (626)
||||||+.+++..|+++||+++++. .+|.|||+|||||+++++|++||.... ..+.++||||+|+||+... ...
T Consensus 1 ~LfHGt~~~~~~~I~~~GF~~~~~g--~~~~~~G~GiYFA~~~s~S~~Y~~~~~~~~g~~~mfL~rVl~G~~~~---~~~ 75 (121)
T cd01439 1 LLFHGTSADAVEAICRHGFDRRFCG--KHGTMYGKGSYFAKNASYSHQYSKKSPKADGLKEMFLARVLTGDYTQ---GHP 75 (121)
T ss_pred CcccccChhhHHHHHHccCCCccCC--CCCCccCCeeecccChhhhhcccccCcCCCCcEEEEEEEEEecceec---CCC
Confidence 6999999999999999999998764 368999999999999999999998754 2478999999999999632 333
Q ss_pred CCCCCC--------CCCeeecccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeeCCceeeeeEEEE
Q 006901 552 DADKLP--------DGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQV 621 (626)
Q Consensus 552 ~~~~~p--------~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEyIVYd~~Qvr~rYLV~~ 621 (626)
....|| .+||||.+- ....++||||+.+|++|.|||++
T Consensus 76 ~~~~pP~~~~~~~~~~yDS~vd~--------------------------------~~~p~~~Vvf~~~q~yPeYlI~y 121 (121)
T cd01439 76 GYRRPPLKPSGVELDRYDSCVDN--------------------------------VSNPSIFVIFSDVQAYPEYLITY 121 (121)
T ss_pred cccCCCCccCCCCCCCccceeCC--------------------------------CCCCCEEEEEeCCccceeEEEEC
Confidence 344555 567776541 11257999999999999999975
No 14
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o
Probab=99.92 E-value=1.3e-25 Score=210.38 Aligned_cols=120 Identities=29% Similarity=0.331 Sum_probs=104.0
Q ss_pred eEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeecccccccccccccCCCC----------------CCceEEEEE
Q 006901 473 LLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPS----------------ATAGVLLLC 536 (626)
Q Consensus 473 LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~~Y~~~~~~----------------~~~~~mlLc 536 (626)
+|||||+..||.+|+++||+++++.++.+|+|||+|||||+++++|++||.++.. ...++|++|
T Consensus 1 ~l~HGs~~~n~~~I~~~Gl~~~~~~~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 80 (137)
T cd01341 1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSAPNISKSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFLTLG 80 (137)
T ss_pred CccccCCccchHHHhhCCCCCCCccccccccccCceeeecCChHHhhhhhcccCCcccccccccccccccccceeEEEEE
Confidence 5899999999999999999999988888899999999999999999999987642 245899999
Q ss_pred EeecccceeeccccCCCCCCCCCCeeecccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeeC-Cceee
Q 006901 537 EVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSV-DQIRM 615 (626)
Q Consensus 537 eVaLGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEyIVYd~-~Qvr~ 615 (626)
+|++|++.+.........++|+|++|+.|++.+.+ +..+.++|||||+. +|++|
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------------~~~~~~~e~VV~~~~~Qv~~ 135 (137)
T cd01341 81 VMSGATEESSRVLFPRNFRGATGAEVVDLLVAMCR-------------------------DALLLPREYIIFEPYSQVSI 135 (137)
T ss_pred EeccccccccccccccccCCCCCCeEEEccccccc-------------------------chhhCCCeEEEecchhhcee
Confidence 99999998776665555677999999999887542 23577999999999 99999
Q ss_pred ee
Q 006901 616 RY 617 (626)
Q Consensus 616 rY 617 (626)
||
T Consensus 136 ~Y 137 (137)
T cd01341 136 RY 137 (137)
T ss_pred cC
Confidence 98
No 15
>smart00773 WGR Proposed nucleic acid binding domain. This domain is named after its most conserved central motif. It is found in a variety of polyA polymerases as well as in molybdate metabolism regulators (e.g. in E.coli) and other proteins of unknown function. The domain is found in isolation in some proteins and is between 70 and 80 residues in length. It is proposed that it may be a nucleic acid binding domain.
Probab=99.84 E-value=6.2e-21 Score=164.28 Aligned_cols=82 Identities=51% Similarity=0.871 Sum_probs=75.6
Q ss_pred CCeeEEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHHhhccccc
Q 006901 155 DNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSN 234 (626)
Q Consensus 155 ~~~~Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~k~~~pf~s~e~Ai~~F~kkF~eKTgn~W~~ 234 (626)
++.+|+++|+++|+.+|+|+||.|||+++. .+.|+||++|||||..||+++. +|.++++|+++|+++|++||+++|.+
T Consensus 2 ~~~~~~~~L~~~d~~~n~nkfy~iql~~~~-~~~~~v~~~wGRiG~~g~~~~~-~~~s~~~A~~~f~k~~~~Kt~~gy~~ 79 (84)
T smart00773 2 GGEIYDVYLNQTDLASNNNKFYRIQLLEDD-FGGYSVWRRWGRIGTNGQTKLE-TFDSLEDAIKEFEKLFKEKTKNGYEE 79 (84)
T ss_pred CCceeEEEEEccccccCCeeEEEEEEEEcC-CCCEEEEEEeeecCCCCceeeE-cCCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 457899999999999999999999999874 4569999999999999999976 68999999999999999999999999
Q ss_pred CCCC
Q 006901 235 RRQF 238 (626)
Q Consensus 235 R~~F 238 (626)
|..|
T Consensus 80 r~~~ 83 (84)
T smart00773 80 RGKF 83 (84)
T ss_pred cccC
Confidence 9876
No 16
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain. It is found in a variety of polyA polymerases as well as the Escherichia coli molybdate metabolism regulator P33345 from SWISSPROT and other proteins of unknown function.The domain is found in isolation in proteins such as Q9JN21 from SWISSPROT and is between 70 and 80 residues in length. ; PDB: 2EOC_A 2RA8_A 4DQY_C 2CR9_A.
Probab=99.83 E-value=1.3e-20 Score=161.30 Aligned_cols=80 Identities=44% Similarity=0.794 Sum_probs=73.6
Q ss_pred CeeEEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHHhhcccccC
Q 006901 156 NDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNR 235 (626)
Q Consensus 156 ~~~Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~k~~~pf~s~e~Ai~~F~kkF~eKTgn~W~~R 235 (626)
+.+|+|+|+++|+..|.|+||.|||+++. .|.|+++|||||..|+.++. +|++.++|+++|+++|++||+++|.+|
T Consensus 2 ~~~y~~~L~~~d~~~n~~kfY~iql~~~~---~~~v~~~wGRiG~~gq~~~~-~f~s~~eA~~~f~~~~~~K~~~gy~~~ 77 (81)
T PF05406_consen 2 GIIYNVYLERTDPEKNSNKFYRIQLLPDL---EWVVFRRWGRIGSKGQTRIK-PFDSEEEAIKEFEKLFKEKTGKGYEER 77 (81)
T ss_dssp TEECEEEEEEEETTTTEEEEEEEEEEEET---TEEEEEEEEETTSSEEEEEE-EESSHHHHHHHHHHHHHHHHSSTSCCC
T ss_pred CcEEEEEEEEEecCCCcEEEEEEEEEeCC---CeEEEEEECCCCCcCcEEEE-eCCCHHHHHHHHHHHHHHHHcCCCccc
Confidence 57999999999999999999999998875 49999999999999999976 689999999999999999999999999
Q ss_pred CCCc
Q 006901 236 RQFT 239 (626)
Q Consensus 236 ~~F~ 239 (626)
++|.
T Consensus 78 ~~f~ 81 (81)
T PF05406_consen 78 DNFA 81 (81)
T ss_dssp GG--
T ss_pred ccCC
Confidence 9983
No 17
>cd07994 WGR WGR domain. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs) as well as the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, a small family of bacterial DNA ligases, and various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain occurs in single-domain proteins and in a variety of domain architectures, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=99.77 E-value=1.5e-18 Score=145.85 Aligned_cols=70 Identities=31% Similarity=0.521 Sum_probs=65.0
Q ss_pred EEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeecccc-CCCceeecCCCCHHHHHHHHHHHHHHHhhcccc
Q 006901 161 AMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGM-KGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWS 233 (626)
Q Consensus 161 ~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~-~Gq~k~~~pf~s~e~Ai~~F~kkF~eKTgn~W~ 233 (626)
++|+.+|. |+||||+|||++++.++.|+||++|||||+ .||+++.. |.|+++|+.+|+++|.+||++++.
T Consensus 2 ~~l~~~d~--~~nKFy~iql~~~~~~~~~~v~~~WGRiGt~~Gq~~~~~-~~s~~~A~~~f~kl~~~Kt~kGY~ 72 (73)
T cd07994 2 ATLGFQDI--GSNKYYKLQLLEDDKENRYWVFRSYGRVGTVIGSTKLEQ-MPSKEEAEEHFMKLYEEKTGKGYY 72 (73)
T ss_pred eEEEEEEC--CCceEEEEEEEeccCCCcEEEEEEECCccCcCCceeeEc-CCCHHHHHHHHHHHHHHHhcCCCC
Confidence 67999998 999999999999888889999999999999 89999874 899999999999999999999874
No 18
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=99.57 E-value=1e-14 Score=122.56 Aligned_cols=72 Identities=29% Similarity=0.524 Sum_probs=65.6
Q ss_pred EEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHHhhccccc
Q 006901 161 AMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSN 234 (626)
Q Consensus 161 ~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~k~~~pf~s~e~Ai~~F~kkF~eKTgn~W~~ 234 (626)
+.|.++|...|+|+||.|||++ +.++.|+|+++|||||..||.+.. +|.|.++|+++|+++|++||++++..
T Consensus 2 ~~l~~~d~~~n~~kfy~i~l~~-~lfg~~~v~~~wGRiG~~Gq~~~~-~~~s~~~A~~~~~k~~~~K~~~GY~~ 73 (74)
T cd07996 2 TRLERIDPERNSARFYEIELEG-DLFGEWSLVRRWGRIGTKGQSRTK-TFDSEEEALKAAEKLIREKLKRGYRE 73 (74)
T ss_pred eEEEEECcccCCCcEEEEEEcc-cCCCCEEEEEEECCCCCCCceEEE-ECCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 4699999999999999999987 477899999999999999999976 58999999999999999999998753
No 19
>COG3831 Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=2.9e-09 Score=91.19 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=65.1
Q ss_pred EEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHHhhcccccCCCC
Q 006901 159 YDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQF 238 (626)
Q Consensus 159 Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~k~~~pf~s~e~Ai~~F~kkF~eKTgn~W~~R~~F 238 (626)
|.++|..+|...|++|||.+-+... .|-++|||||+.||++++. |++.++|..+|.++-.+|...++.+..++
T Consensus 1 ~~~~l~~~D~~~n~~kFy~~~i~g~------~L~~~wGRiG~~Gq~~~k~-F~~~~~a~~~~~kLi~~KrkkGY~d~~~~ 73 (85)
T COG3831 1 YRLYLERIDEKRNMAKFYAVEIEGA------ELTRNWGRIGTKGQSQIKS-FDDSADAEKAALKLIREKRKKGYVEAVAA 73 (85)
T ss_pred CeeEEEEecccccccceEEEEEecc------eeEEeecccccCcceeeee-CCCHHHHHHHHHHHHHHHHhccccccccc
Confidence 3467999999999999999998632 5889999999999999886 99999999999999999999999887654
Q ss_pred c
Q 006901 239 T 239 (626)
Q Consensus 239 ~ 239 (626)
.
T Consensus 74 ~ 74 (85)
T COG3831 74 N 74 (85)
T ss_pred c
Confidence 3
No 20
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=98.67 E-value=2.7e-08 Score=72.13 Aligned_cols=34 Identities=50% Similarity=0.775 Sum_probs=31.3
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 006901 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAV 36 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~ 36 (626)
++|+|.|||++|++|||+++|.|++|++||++++
T Consensus 2 ~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 2 SKLTVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp TTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 5799999999999999999999999999999875
No 21
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=98.39 E-value=3.8e-07 Score=66.08 Aligned_cols=34 Identities=59% Similarity=0.809 Sum_probs=31.8
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 006901 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAV 36 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~ 36 (626)
++|+|.+||++|+.+||+++|.|++|++||.+.+
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 5899999999999999999999999999998753
No 22
>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=1.1e-06 Score=87.43 Aligned_cols=40 Identities=53% Similarity=0.687 Sum_probs=36.8
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhccc
Q 006901 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKK 42 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~ 42 (626)
.||||.+||+||..|||++.|+|++|+.||++|++.-+++
T Consensus 7 kklkVa~LkeeLa~rGL~~~GNK~EL~~RLtaa~e~iaDe 46 (260)
T KOG4259|consen 7 KKLKVAELKEELAERGLSTAGNKAELVSRLTAATESIADE 46 (260)
T ss_pred hhccHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999875443
No 23
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases. The WGR domain is found in a small family of predicted bacterial DNA ligases. It has been called WGR after the most conserved central motif of the domain. The domain typically occurs in together with an ATP-dependent DNA ligase domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=98.20 E-value=5.8e-06 Score=70.28 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=53.6
Q ss_pred CCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCceeecC-CCCHHHHHHHHHHHHHHHhhccccc
Q 006901 170 DNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGP-YNLQDTAINEFEQKFFAKTKNHWSN 234 (626)
Q Consensus 170 ~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~k~~~p-f~s~e~Ai~~F~kkF~eKTgn~W~~ 234 (626)
.+.+|||.+-+-+. +.+.|.|-.||||+|..||.+..+. |.+.+.|.++|.++-.+||+.++..
T Consensus 10 g~S~Kfyev~~~~~-~d~g~~v~~~yGR~Gt~gq~~tkt~~~~~~~~A~k~~~Klv~eK~~KGY~~ 74 (77)
T cd07998 10 GNSDKVYEVDLFEV-SDDGYVVNFRYGRRGSALREGTKTVAPVTLEAAEKIFDKLVKSKTNKGYRE 74 (77)
T ss_pred CCCceEEEEEEEec-cCCceEEEEEEccccCCcccccccCCCCCHHHHHHHHHHHHHHHhcCCcee
Confidence 36789999998875 4568899999999999999876532 4689999999999999999877654
No 24
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.80 E-value=1.2e-05 Score=88.67 Aligned_cols=41 Identities=41% Similarity=0.656 Sum_probs=37.7
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcccc
Q 006901 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKS 43 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~~ 43 (626)
+.|+|.+||+||++|+|||.|+|++||+||+.||.++...+
T Consensus 31 seLRViDLraEL~KRnldt~GnKsVLmERLkKal~~EG~dP 71 (940)
T KOG4661|consen 31 SELRVIDLRAELEKRNLDTVGNKSVLMERLKKALRAEGLDP 71 (940)
T ss_pred hheeeeehhhHHhhhcccccCcHHHHHHHHHHHHHhcCCCc
Confidence 56999999999999999999999999999999999886533
No 25
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=96.11 E-value=0.0068 Score=43.97 Aligned_cols=33 Identities=42% Similarity=0.685 Sum_probs=29.6
Q ss_pred hcccCHHHHHHHHHhhCCCCCCchHHHHHHHhh
Q 006901 70 FGQMGVKQLREQADLRGLSKAGTKKELLERLCN 102 (626)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (626)
+..|++.+|++.+..+|+++.|+|.++++||.+
T Consensus 1 l~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~ 33 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLSTSGKKAELIERLKE 33 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-STSSHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 467999999999999999999999999999964
No 26
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=95.09 E-value=0.02 Score=41.69 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=21.3
Q ss_pred CCCCcHHHHHHHHHHcCCCC--CCCHHHHHHHHH
Q 006901 2 ASNLKVDQLRAKLAQRGLST--AGTKAILVQRLE 33 (626)
Q Consensus 2 ~~~~~v~~l~~el~~r~l~~--~g~k~~l~~rl~ 33 (626)
|++|||.+||+.|..+|++- ..-|++||+=++
T Consensus 1 p~sltV~~Lk~iL~~~~I~~ps~AkKaeLv~L~~ 34 (35)
T PF12949_consen 1 PKSLTVAQLKRILDEHGIEFPSNAKKAELVALFN 34 (35)
T ss_dssp STT--SHHHHHHHHHHT---SSS--SHHHHHH--
T ss_pred CCcCcHHHHHHHHHHcCCCCCCCCCHHHHHHHHc
Confidence 78999999999999999865 455999998654
No 27
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=94.71 E-value=0.046 Score=39.48 Aligned_cols=32 Identities=41% Similarity=0.709 Sum_probs=29.9
Q ss_pred cccCHHHHHHHHHhhCCCCCCchHHHHHHHhh
Q 006901 71 GQMGVKQLREQADLRGLSKAGTKKELLERLCN 102 (626)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (626)
..|++.+|++.+..+|++.+|.|.++++|+..
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~ 33 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLE 33 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999964
No 28
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=94.34 E-value=0.018 Score=66.83 Aligned_cols=42 Identities=33% Similarity=0.402 Sum_probs=37.8
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcccc
Q 006901 2 ASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKS 43 (626)
Q Consensus 2 ~~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~~ 43 (626)
|.-|||++||-||.-|||.++|+|..|++||+-++.-+.+++
T Consensus 646 pK~mKv~~lR~elegral~~KG~Ks~l~~rl~~~l~te~~~E 687 (1194)
T KOG4246|consen 646 PKIMKVVVLRPELEGRALGMKGEKSDLPERLAIPLTTEPKEE 687 (1194)
T ss_pred chhhhhhhhhhhhcccccccccchhhHHHHhhcccccchhhh
Confidence 678999999999999999999999999999999997665544
No 29
>PF13151 DUF3990: Protein of unknown function (DUF3990)
Probab=82.23 E-value=1 Score=43.54 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=37.4
Q ss_pred eeEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeecccccccccccccCCCCCCceEEEEEEeec
Q 006901 472 MLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVAL 540 (626)
Q Consensus 472 ~LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~~Y~~~~~~~~~~~mlLceVaL 540 (626)
|.|||||... + .+-++. ......=||+|.|.++....|..++........+++..-+.-.
T Consensus 1 M~LYHGS~~~-i-----~~pd~~---~~r~~~DFG~GFY~T~~~~qA~~wA~~~~~~~~~~v~~Y~~~~ 60 (154)
T PF13151_consen 1 MILYHGSNQI-I-----EKPDLS---KGRPNLDFGKGFYLTTDKEQAKRWAKRKRNGGDPIVNVYEFDE 60 (154)
T ss_pred CEeecCCCcc-c-----cCceec---cCcccCccCceeEcccCHHHHHHHHHhcccCCCCEEEEEEEec
Confidence 6799999742 1 122221 2223344999999999998888888655233455555555543
No 30
>PF15633 Tox-ART-HYD1: HYD1 signature containing ADP-ribosyltransferase
Probab=79.68 E-value=0.8 Score=40.90 Aligned_cols=40 Identities=33% Similarity=0.656 Sum_probs=31.5
Q ss_pred EEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeeccccc
Q 006901 474 LWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMF 515 (626)
Q Consensus 474 LwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~ 515 (626)
|+|=|+..++.+|+++|--..+...|.. +||.|.||++.+
T Consensus 1 lyHYTs~~G~n~I~~s~~i~~~a~~p~~--~~~~g~y~t~~a 40 (96)
T PF15633_consen 1 LYHYTSEKGYNGILESGIIKLKANNPKD--RFGQGQYFTDIA 40 (96)
T ss_pred CccccchhhhHHhhccceEEeccCCccc--cCCCceEEEecC
Confidence 5888999999999999865544444444 599999999875
No 31
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=78.33 E-value=0.65 Score=57.24 Aligned_cols=137 Identities=12% Similarity=0.103 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHhcccCCCCCC--------cccccceeEEEecchhhHHHH--h--hcC----CCCceeEEecCCCCCH
Q 006901 420 VDSLEFSLIANYLLNTHAKTHSA--------YSVDIVQIFRVEREGETERFR--K--FSN----SKNRMLLWHGSRLTNW 483 (626)
Q Consensus 420 ~~s~Eyk~I~~y~~~t~~~th~~--------~~~~I~~IfrV~r~~e~~rF~--~--~~~----~~N~~LLwHGTr~~N~ 483 (626)
.+..++....++...|. .+|.. +...+..+|.+.....++++. . |.. ..++..+||++...+
T Consensus 966 ~~~~~~~~~a~~~~~t~-~~h~~~~~~~~~f~~~~~~r~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~~f~~~~~~~- 1043 (1143)
T KOG4177|consen 966 CSITGGVAPAQWEDITG-TTHLTFANDCGSFTTNVSARFWLVDCRKTREAVTHATQLYNELIFVYMAKFVVFAKSNFPN- 1043 (1143)
T ss_pred hcccCCcCcchhhcccc-eeecccccccceeehhhhhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhccCCcch-
Confidence 34445555555554442 34421 223345677776665554432 1 211 467899999998877
Q ss_pred HHHHhcCCCCCCCCCCCCcceeeeeeecccccccccccccCCCC-------------CCceEEEEEEeecccceeecccc
Q 006901 484 TGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPS-------------ATAGVLLLCEVALGDMSELLYAN 550 (626)
Q Consensus 484 ~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~~Y~~~~~~-------------~~~~~mlLceVaLGk~~e~~~~~ 550 (626)
.|-..||... .. ..+.|||.||||+.+++++..|...... -....+++|.|.+|+..--....
T Consensus 1044 -~~~~~~~~~~--~~-~~~~~~~~~~~f~~~~~~~d~~v~~~~~~~~~~~~n~~p~~~~~~ql~~~~~~~~~~~l~~~~~ 1119 (1143)
T KOG4177|consen 1044 -EGRLRCFCMT--DD-KVDKTLEQQEYFAEVARSRDIEVLGGKGGFAEPSGNDVPLTKAGQQLSFCFVPFLENRLAFSVK 1119 (1143)
T ss_pred -hhcccccccc--CC-ccCcchhhHHHHHHhhhhhhhhhhccccceecccCccccceeccceeEEeeehhhhhhhHHHHH
Confidence 5667788763 22 3466899999999999999998764321 13468999999999975333222
Q ss_pred CCCCCCCCCCeeeccc
Q 006901 551 YDADKLPDGKLSTKGV 566 (626)
Q Consensus 551 ~~~~~~p~G~~Sv~g~ 566 (626)
.+ +.|.+|+.+-
T Consensus 1120 ---~~-~~g~~~~~~~ 1131 (1143)
T KOG4177|consen 1120 ---KR-HAGRISFMAE 1131 (1143)
T ss_pred ---hh-cCCcceeecc
Confidence 12 4488988763
No 32
>cd01436 Dipth_tox_like Mono-ADP-ribosylating toxins catalyze the transfer of ADP_ribose from NAD+ to eukaryotic Elongation Factor 2, halting protein synthesis. A single molecule of delivered toxin is sufficient to kill a cell. These toxins share mono-ADP-ribosylating activity with a variety of bacterial toxins, such as cholera toxin and pertussis toxin. The structural core is homologous to the poly-ADP ribosylating enzymes such as the PARP enzymes and Tankyrase. Diphtheria toxin is encoded by a lysogenic bacteriophage. Both diphtheria toxin and Pseudomonas aeruginosa exotoxin A are multi-domain proteins. These domains provide a EF2 ADP_ribosylating, receptor-binding, and intracellular trafficking/transmembrane functions .
Probab=67.94 E-value=4.4 Score=37.60 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=35.9
Q ss_pred EecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeecccccccccccccCC
Q 006901 475 WHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYAS 525 (626)
Q Consensus 475 wHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~~Y~~~~ 525 (626)
+|||...-..+|.. |.+-.|....-.-----+|.|.|++..-+++|+...
T Consensus 3 YHGT~~~~~~sI~~-gI~~~~~g~~~~~d~~W~GfY~a~~~~~A~GYa~d~ 52 (147)
T cd01436 3 YHGTKPGYVDSIQK-GIQKPKSGTQGNYDDDWKGFYSTDNKYDAAGYSVDN 52 (147)
T ss_pred ccccchHHHHHHHh-hccCCCCCCCcchhhhhcceeecCCHhhhcceeecc
Confidence 89999999999988 666433322111111347999999999999999753
No 33
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=65.57 E-value=3.2 Score=41.18 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.1
Q ss_pred eeEEecCCCCCHHHHHhcCCCC
Q 006901 472 MLLWHGSRLTNWTGILSQGLRI 493 (626)
Q Consensus 472 ~LLwHGTr~~N~~gIL~~GLri 493 (626)
..|||||...+|.+|+.+||+-
T Consensus 95 ~~lyHGT~~~~~~~I~~~GL~p 116 (179)
T PRK00819 95 AVLYHGTSSEELDSILEEGLKP 116 (179)
T ss_pred ceeEeCCCHHHHHHHHHhCCCc
Confidence 4899999999999999999864
No 34
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=64.32 E-value=14 Score=43.13 Aligned_cols=37 Identities=30% Similarity=0.511 Sum_probs=32.9
Q ss_pred hhhhcccCHHHHHHHHHhhCCCCCCchHHHHHHHhhc
Q 006901 67 IESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNH 103 (626)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (626)
-..|..|||.+|++.+..+|++..|||.++++|+.+.
T Consensus 546 ~~~l~kltv~~Lk~~l~~~g~~~~~kKadLi~~i~~~ 582 (584)
T TIGR00578 546 KGTLGKLTVSVLKDFCRAYGLRSGSKKQELLDALTKH 582 (584)
T ss_pred cCChhhccHHHHHHHHHHcCCCccccHHHHHHHHHHH
Confidence 3467789999999999999999999999999999653
No 35
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=60.88 E-value=10 Score=28.69 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=25.2
Q ss_pred hhcccCHHHHHHHHHhhCCCCCC--chHHHHHHHhh
Q 006901 69 SFGQMGVKQLREQADLRGLSKAG--TKKELLERLCN 102 (626)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 102 (626)
||..|++.+|+++|...|+.-.+ +|.+++..|-.
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~ 36 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILK 36 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHH
Confidence 68899999999999999996443 57888888743
No 36
>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning]
Probab=55.63 E-value=8.9 Score=39.21 Aligned_cols=38 Identities=37% Similarity=0.615 Sum_probs=34.0
Q ss_pred hhhhcccCHHHHHHHHHhhCCCCCCchHHHHHHHhhcc
Q 006901 67 IESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHA 104 (626)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (626)
..|...|.|..|++.+..||++..|-|.|+..||.+..
T Consensus 3 ~sD~kklkVa~LkeeLa~rGL~~~GNK~EL~~RLtaa~ 40 (260)
T KOG4259|consen 3 MSDYKKLKVAELKEELAERGLSTAGNKAELVSRLTAAT 40 (260)
T ss_pred chhhhhccHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 35788999999999999999999999999999996543
No 37
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=51.77 E-value=7.4 Score=38.75 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=22.1
Q ss_pred ceeEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeecccc
Q 006901 471 RMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADM 514 (626)
Q Consensus 471 ~~LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~ 514 (626)
-..|+|||...+|..|+.+||.- |-..-|.||..
T Consensus 105 p~~lyHGT~~~~~~~I~~~GL~~----------m~R~hVHls~~ 138 (186)
T PF01885_consen 105 PPILYHGTYRKAWPSILEEGLKP----------MGRNHVHLSTG 138 (186)
T ss_dssp -SEEEE--BGGGHHHHHHH-B-------------SSSSEEEES-
T ss_pred CCEEEEccchhhHHHHHHhCCCC----------CCCCEEEEeec
Confidence 46899999999999999999763 33446888865
No 38
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=50.91 E-value=27 Score=26.40 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHHcCCCC-CCC-HHHHHHHHHHHH
Q 006901 4 NLKVDQLRAKLAQRGLST-AGT-KAILVQRLEEAV 36 (626)
Q Consensus 4 ~~~v~~l~~el~~r~l~~-~g~-k~~l~~rl~~~~ 36 (626)
+|++.|||+--+..|+.. .++ |.+||..+.++.
T Consensus 4 ~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~~q 38 (43)
T PF07498_consen 4 SMTLSELREIAKELGIEGYSKMRKQELIFAILKAQ 38 (43)
T ss_dssp CS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHH
Confidence 689999999999999954 444 999999987775
No 39
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.14 E-value=21 Score=39.76 Aligned_cols=34 Identities=41% Similarity=0.505 Sum_probs=31.5
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 006901 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVE 37 (626)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~ 37 (626)
-|+-.+||.-|+.-||+|.|-|..|+.|-++.+-
T Consensus 268 ~l~~~~lr~kL~~lglpt~G~r~~l~~Rh~e~~~ 301 (397)
T TIGR00599 268 LLTDSQIRKKLSELGLSTNGTRQLLQKRHNEWET 301 (397)
T ss_pred hcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999874
No 40
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=42.15 E-value=26 Score=40.56 Aligned_cols=37 Identities=32% Similarity=0.458 Sum_probs=33.7
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Q 006901 2 ASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEE 39 (626)
Q Consensus 2 ~~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~ 39 (626)
+..|+|.+||++|++|-|.+.+ |-+|.+||-+++-++
T Consensus 13 ~~p~~v~~~~~~~~~rk~~e~e-k~e~e~~~~a~~~~e 49 (718)
T KOG2416|consen 13 IDPWKVTELKEELKRRKLTERE-KEELERRLDAALRAE 49 (718)
T ss_pred CcchhHHHHHHHHHHhhhcccc-chhHHHHHHHhhhhh
Confidence 4679999999999999999999 999999999998655
No 41
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=40.82 E-value=40 Score=27.74 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 006901 6 KVDQLRAKLAQRGLSTAGTKAILVQRLE 33 (626)
Q Consensus 6 ~v~~l~~el~~r~l~~~g~k~~l~~rl~ 33 (626)
=...||++|..|||...|.=.+=.+||=
T Consensus 16 GldrLK~~L~a~GLKcGGTl~ERA~RLf 43 (60)
T PF13297_consen 16 GLDRLKSALMALGLKCGGTLQERAARLF 43 (60)
T ss_pred CHHHHHHHHHHcCCccCCCHHHHHHHHH
Confidence 3578999999999999999888788874
No 42
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=38.27 E-value=11 Score=44.25 Aligned_cols=39 Identities=38% Similarity=0.566 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhccc
Q 006901 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKK 42 (626)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~ 42 (626)
.+++.+|+++..+||+.++|.|+++++|+..+.+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (643)
T PLN03124 81 GMTVRELREAASERGLATTGRKKDLLERLCAALESDVKV 119 (643)
T ss_pred ccccchhhHHHHHHhhhccccccchhhhccccccccccc
Confidence 578999999999999999999999999998877665543
No 43
>PF14164 YqzH: YqzH-like protein
Probab=36.77 E-value=50 Score=27.51 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCcHHHHHH
Q 006901 293 ISMMKQLMMEIGYNANKLPLGKLSKSTILK 322 (626)
Q Consensus 293 ~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~ 322 (626)
.+|+.+.|.++|+|..-+||..-..+++.+
T Consensus 7 ~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~ 36 (64)
T PF14164_consen 7 EKMIINCLRQYGYDVECMPLSDEEWEELCK 36 (64)
T ss_pred HHHHHHHHHHhCCcccCCCCCHHHHHHHHH
Confidence 478899999999999999998777776654
No 44
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=36.48 E-value=21 Score=36.39 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=21.7
Q ss_pred CCceeEEecCCCCCHHHHHhcCCCC
Q 006901 469 KNRMLLWHGSRLTNWTGILSQGLRI 493 (626)
Q Consensus 469 ~N~~LLwHGTr~~N~~gIL~~GLri 493 (626)
..-..|+|||...++.+|+.+|+..
T Consensus 118 ~~p~~LyhGTs~~~l~~I~~~Gi~P 142 (211)
T COG1859 118 EPPAVLYHGTSPEFLPSILEEGLKP 142 (211)
T ss_pred CCCcEEEecCChhhhHHHHHhcCcc
Confidence 4456899999999999999999864
No 45
>PF10208 Armet: Degradation arginine-rich protein for mis-folding; InterPro: IPR019345 This entry represents Armet proteins (aka mesencephalic astrocyte-derived neurotrophic factor or arginine-rich protein). Armet is a small protein of approximately 170 residues which contains four di-sulphide bridges that are highly conserved from nematodes to humans. Armet is a soluble protein resident in the endoplasmic reticulum and induced by ER stress. It appears to be involved with dealing with mis-folded proteins in the ER, thus in quality control of ER stress []. Armet from Rattus norvegicus (Rat) selectively promotes the survival of dopaminergic neurons of the ventral mid-brain. It modulates GABAergic transmission to the dopaminergic neurons of the substantia nigra, and enhances spontaneous, as well as evoked, GABAergic inhibitory postsynaptic currents in dopaminergic neurons [].; PDB: 2KVE_A 2KVD_A 2W51_A 2W50_B 2RQY_A.
Probab=34.07 E-value=34 Score=33.20 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.6
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCC
Q 006901 2 ASNLKVDQLRAKLAQRGLSTAGT 24 (626)
Q Consensus 2 ~~~~~v~~l~~el~~r~l~~~g~ 24 (626)
..||+|.+||+-|..||++-.|-
T Consensus 104 l~KlrVk~LK~iL~~~g~~C~GC 126 (154)
T PF10208_consen 104 LKKLRVKQLKKILDDWGEDCKGC 126 (154)
T ss_dssp TTTTCHHHHHHHHHHHTTT-SS-
T ss_pred HhhCcHHHHHHHHHHcCCCCCCc
Confidence 36999999999999999999985
No 46
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=33.10 E-value=78 Score=24.41 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=27.8
Q ss_pred CCcHHHHHHHHHHcCCCCC----CCHHHHHHHHHHHHH
Q 006901 4 NLKVDQLRAKLAQRGLSTA----GTKAILVQRLEEAVE 37 (626)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~----g~k~~l~~rl~~~~~ 37 (626)
.|.=.|||++|.+-|++.. -....+..||.+++.
T Consensus 5 ~LSd~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~~~ 42 (44)
T smart00540 5 RLSDAELRAELKQYGLPPGPITDTTRKLYEKKLRKLRR 42 (44)
T ss_pred HcCHHHHHHHHHHcCCCCCCcCcchHHHHHHHHHHHHc
Confidence 4666899999999999853 347889999998875
No 47
>PTZ00315 2'-phosphotransferase; Provisional
Probab=32.93 E-value=19 Score=41.86 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.9
Q ss_pred eeEEecCCCCCHHHHHhcC-CCC
Q 006901 472 MLLWHGSRLTNWTGILSQG-LRI 493 (626)
Q Consensus 472 ~LLwHGTr~~N~~gIL~~G-Lri 493 (626)
..|||||...+|.+|+++| |+-
T Consensus 477 ~~lyHGT~~~~~~sI~~~G~L~~ 499 (582)
T PTZ00315 477 PVAVHGTYWSAWKAIQRCGYLST 499 (582)
T ss_pred CeEEeCCcHHHHHHHHHcCCccc
Confidence 4799999999999999999 864
No 48
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=32.02 E-value=75 Score=25.64 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHH
Q 006901 3 SNLKVDQLRAKLAQRGLST--AGTKAILVQRLEEAV 36 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~--~g~k~~l~~rl~~~~ 36 (626)
|+|...|..+||.++|++. +-.|++||.--...+
T Consensus 14 SRl~k~eMiaem~~~G~~y~~~~tK~~Lvk~fkKql 49 (54)
T PF09124_consen 14 SRLTKPEMIAEMDSYGFEYNEKDTKAQLVKIFKKQL 49 (54)
T ss_dssp HTS-HHHHHHHHHHTT----TTS-HHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhCCcCCccccHHHHHHHHHHHH
Confidence 5899999999999999975 455999998766655
No 49
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=29.58 E-value=1.4e+02 Score=31.43 Aligned_cols=81 Identities=26% Similarity=0.354 Sum_probs=49.9
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhccccCCCccCCCCCCCCCCCCCccccchhhhcccCHHHHHHHHH
Q 006901 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKSVGSKKRGRECDETDSNGSQKVKSIESFGQMGVKQLREQAD 83 (626)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (626)
.|....|++-++--||.+-|...-|..||...+..=...+ ..|.-+-+..|+..+|+.+|.
T Consensus 170 ~Lsr~~L~~L~r~~~l~~~~~~~~lr~rL~~~~~~l~~dD-------------------~~i~~eGv~~Ls~~EL~~Ac~ 230 (268)
T PF07766_consen 170 NLSRPHLRALCRLLGLTPFGPSSLLRRRLRKRLRYLKQDD-------------------RLIKREGVDSLSEEELQDACY 230 (268)
T ss_dssp HS-HHHHHHHHHHTT----SSHHHHHHHHHHHHHHHHHHH-------------------HHHHHH-GGGS-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHhccCcCCchHHHHHHHHHHHHHHHHHH-------------------HHHHHhccccCCHHHHHHHHH
Confidence 4566788999999999999999999999988875443311 223344467799999999999
Q ss_pred hhCCCCCCchHH-HHHHHhhc
Q 006901 84 LRGLSKAGTKKE-LLERLCNH 103 (626)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~~~ 103 (626)
.||+.+.|...+ ..+.+..|
T Consensus 231 ~RGl~~~~~s~~~lr~~L~~W 251 (268)
T PF07766_consen 231 ERGLRSTGLSEEELREWLKQW 251 (268)
T ss_dssp HTT---TT--HHHHHHHHHHH
T ss_pred HhCCCcCCCCHHHHHHHHHHH
Confidence 999999885533 33444443
No 50
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=28.01 E-value=47 Score=25.80 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=13.2
Q ss_pred CcHHHHHHHHHHcCCC
Q 006901 5 LKVDQLRAKLAQRGLS 20 (626)
Q Consensus 5 ~~v~~l~~el~~r~l~ 20 (626)
+||.+||++|..+|++
T Consensus 11 lk~~elrd~LEe~g~~ 26 (46)
T PF08312_consen 11 LKCLELRDELEEQGYS 26 (46)
T ss_dssp HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCC
Confidence 6899999999999983
No 51
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.69 E-value=87 Score=31.08 Aligned_cols=36 Identities=33% Similarity=0.489 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHHHcCCC---------------CCCCHHHHHHHHHHHHHHh
Q 006901 3 SNLKVDQLRAKLAQRGLS---------------TAGTKAILVQRLEEAVEEE 39 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~---------------~~g~k~~l~~rl~~~~~~~ 39 (626)
.|++..|||++|+.-|+. ..| .++|.+||+++++..
T Consensus 17 ~kV~MAdLka~~~dlGf~~v~T~iaSGNlvf~s~~~-~~el~~klE~afe~~ 67 (178)
T COG3797 17 RKVVMADLKAALTDLGFANVRTYIASGNLVFESEAG-AAELEAKLEAAFEKR 67 (178)
T ss_pred ceEeHHHHHHHHHHcCcchhhHhhhcCCEEEEcCCC-hHHHHHHHHHHHHHH
Confidence 367789999999999986 345 899999999999654
No 52
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.59 E-value=1.8e+02 Score=21.25 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHcCCCCCC---CHHHHHHHHHHH
Q 006901 5 LKVDQLRAKLAQRGLSTAG---TKAILVQRLEEA 35 (626)
Q Consensus 5 ~~v~~l~~el~~r~l~~~g---~k~~l~~rl~~~ 35 (626)
..-.+||+-|.+.|+.... .+.+|++.+++.
T Consensus 4 Ws~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVPKSAKTRDELLKLAKKN 37 (38)
T ss_pred CCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHh
Confidence 4457999999999998873 688898887653
No 53
>PF12509 DUF3715: Protein of unknown function (DUF3715); InterPro: IPR022188 This domain family is found in eukaryotes, and is approximately 170 amino acids in length.
Probab=21.52 E-value=1e+02 Score=30.24 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=49.7
Q ss_pred CHHHHHhcCCCCCCCCCCCCcceeee---eeecccccccccccccCCCCCCceEEEEEEeecccceeecccc---CCCCC
Q 006901 482 NWTGILSQGLRIAPPEAPATGYMFGK---GVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYAN---YDADK 555 (626)
Q Consensus 482 N~~gIL~~GLriap~ea~~tG~mfGk---GIYFAd~~sKS~~Y~~~~~~~~~~~mlLceVaLGk~~e~~~~~---~~~~~ 555 (626)
-...|..+||.+. ...+..+|+ |+|+...+.-...+..... ...+.+++.+|.-|++..+..+. -....
T Consensus 41 ~~~~v~~~GL~v~----~~k~~~Lg~ps~gv~~~~~~D~~~~~~~~~~-~~~~~ii~~kv~~~k~k~i~~~~~~~~~~~~ 115 (165)
T PF12509_consen 41 QVTSVCQRGLKVG----NQKGTILGKPSMGVYLSRHSDLLESQPFICS-SANGEIIIFKVLKGKVKKISDSNGSTQSFLD 115 (165)
T ss_pred hhHHHHhcccccc----cccccccCCCCCCcccccCCchhhcchhhhc-CCCCceeEEeeccCcccccccccccccccCC
Confidence 3457789999864 223446787 9999865544444333221 24678999999999998776554 22233
Q ss_pred CCCCCeeecc
Q 006901 556 LPDGKLSTKG 565 (626)
Q Consensus 556 ~p~G~~Sv~g 565 (626)
|-++|++..+
T Consensus 116 p~p~~d~h~~ 125 (165)
T PF12509_consen 116 PTPSYDCHVS 125 (165)
T ss_pred CcccHHHHhh
Confidence 4466766653
No 54
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=20.92 E-value=1.7e+02 Score=31.02 Aligned_cols=52 Identities=19% Similarity=0.131 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCCcHHHHHHHHHHHHHH
Q 006901 279 LEPCVAKFISLIC---NISMMKQLMMEIGYNAN--KLPLGKLSKSTILKGYDVLKRI 330 (626)
Q Consensus 279 L~~~Vq~li~lI~---d~~~m~~~m~e~~~D~~--kmPLGkLSk~qI~~g~~vL~eI 330 (626)
|...+..++..++ +...+|.+|..+|++.. ++||..|+.++..+-.++|.++
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 289 (294)
T TIGR02313 233 LHFELLEANDAIFKDTNPAPLKAALGMMGLIEKELRPPLGLPSDALEEEIRDMAEKY 289 (294)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHc
Confidence 4556666666443 45668999998898654 9999999999988877888765
No 55
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=20.51 E-value=1.2e+02 Score=33.06 Aligned_cols=33 Identities=39% Similarity=0.605 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 006901 5 LKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVE 37 (626)
Q Consensus 5 ~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~ 37 (626)
|.-.++|..|...||+|.|.|..|+.|-+....
T Consensus 251 ls~s~ik~KLse~GLst~G~kQ~likRh~~~v~ 283 (442)
T KOG0287|consen 251 LSDSDIKKKLSEHGLSTQGNKQQLIKRHQEFVH 283 (442)
T ss_pred ccHHHHHHHHHHcCCCCcchHHHHHHHHHHHHH
Confidence 445689999999999999999999999987763
Done!