Query 006901
Match_columns 626
No_of_seqs 366 out of 1057
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 11:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dqy_C Poly [ADP-ribose] polym 100.0 5E-133 2E-137 1103.9 41.9 489 123-626 3-494 (506)
2 3kjd_A Poly [ADP-ribose] polym 100.0 8.5E-98 3E-102 793.7 29.3 345 276-625 20-368 (368)
3 1efy_A Poly (ADP-ribose) polym 100.0 7.6E-94 2.6E-98 762.8 33.0 347 276-626 1-349 (350)
4 3c4h_A Poly(ADP-ribose) polyme 100.0 6.4E-88 2.2E-92 719.3 27.1 339 275-622 6-357 (357)
5 2x5y_A Zinc finger CCCH-type a 100.0 1.5E-39 5.1E-44 314.3 12.7 167 410-623 2-172 (173)
6 3u9h_A Tankyrase-2; protein-li 100.0 1.5E-38 5E-43 322.0 16.3 179 411-623 29-235 (240)
7 2pqf_A Poly [ADP-ribose] polym 100.0 1.4E-37 4.9E-42 306.5 16.5 169 410-623 9-193 (198)
8 2eoc_A Poly [ADP-ribose] polym 100.0 2.8E-36 9.5E-41 276.6 13.4 121 126-252 4-124 (124)
9 3blj_A Poly(ADP-ribose) polyme 100.0 4.1E-36 1.4E-40 300.9 15.3 170 409-622 33-220 (221)
10 3hkv_A PARP-10, poly [ADP-ribo 100.0 1E-35 3.4E-40 297.0 15.2 173 412-624 10-200 (217)
11 3smj_A Poly [ADP-ribose] polym 100.0 1.9E-35 6.6E-40 290.3 15.6 168 411-622 7-192 (193)
12 4f0d_A PARP-16, poly [ADP-ribo 99.8 2.8E-21 9.5E-26 198.1 11.6 120 413-543 93-220 (277)
13 1jjr_A KU70, thyroid autoantig 99.1 1.1E-11 3.6E-16 116.4 2.6 89 3-105 62-150 (151)
14 1zrj_A E1B-55KDA-associated pr 99.1 5.2E-11 1.8E-15 91.7 3.6 39 2-40 10-48 (50)
15 1h1j_S THO1 protein; SAP domai 99.0 2.5E-10 8.4E-15 88.4 5.0 39 3-41 6-44 (51)
16 2do1_A Nuclear protein HCC-1; 99.0 6.6E-10 2.3E-14 87.2 5.9 40 2-41 10-49 (55)
17 2kvu_A MKL/myocardin-like prot 98.9 7.9E-10 2.7E-14 91.5 5.9 39 3-41 27-65 (75)
18 2rnn_A E3 SUMO-protein ligase 98.0 6.1E-06 2.1E-10 73.7 5.4 38 3-40 38-75 (114)
19 2ra8_A Uncharacterized protein 97.8 1.5E-05 5.1E-10 84.8 6.4 61 169-236 9-69 (362)
20 1zrj_A E1B-55KDA-associated pr 96.4 0.0034 1.2E-07 48.2 4.8 41 66-106 6-46 (50)
21 1h1j_S THO1 protein; SAP domai 96.4 0.0021 7.3E-08 49.5 3.6 38 68-105 3-40 (51)
22 2do1_A Nuclear protein HCC-1; 95.8 0.0072 2.5E-07 47.3 4.0 36 67-102 7-42 (55)
23 2kvu_A MKL/myocardin-like prot 95.7 0.0082 2.8E-07 49.7 4.0 39 65-103 21-59 (75)
24 2rnn_A E3 SUMO-protein ligase 91.4 0.16 5.4E-06 45.4 4.1 38 66-103 33-70 (114)
25 1jjr_A KU70, thyroid autoantig 90.4 0.2 7E-06 46.8 4.0 42 65-106 56-97 (151)
26 1zbh_A 3'-5' exonuclease ERI1; 88.1 0.49 1.7E-05 48.6 5.4 36 4-39 28-63 (299)
27 2rno_A Putative DNA-binding pr 84.2 1.5 5.2E-05 38.0 5.5 39 5-43 20-58 (110)
28 2do5_A Splicing factor 3B subu 68.0 7.6 0.00026 29.6 4.6 35 5-39 11-45 (58)
29 1jey_A KU70; double-strand DNA 65.8 1.4 4.6E-05 49.8 0.3 41 64-104 567-607 (609)
30 1v66_A Protein inhibitor of ac 65.6 5.9 0.0002 31.7 3.8 35 3-37 12-46 (65)
31 1wfx_A Probable RNA 2'-phospho 64.5 2.6 8.8E-05 40.7 1.9 35 472-516 92-126 (186)
32 1zbu_A ERI-1 homolog, 3'-5' ex 56.0 2.4 8.2E-05 44.6 0.0 37 3-39 77-113 (349)
33 3skq_A Mitochondrial distribut 55.6 12 0.00042 37.5 5.0 41 3-43 145-186 (249)
34 1kcf_A Hypothetical 30.2 KD pr 55.1 9 0.00031 38.7 4.1 33 3-35 2-34 (258)
35 3skq_A Mitochondrial distribut 47.8 44 0.0015 33.5 7.6 78 4-100 97-175 (249)
36 1v66_A Protein inhibitor of ac 42.0 26 0.00088 28.0 3.9 29 72-100 13-41 (65)
37 1y02_A CARP2, FYVE-ring finger 39.1 25 0.00086 31.4 3.9 28 4-31 78-107 (120)
38 2out_A MU-like prophage flumu 30.1 22 0.00075 32.2 2.0 19 3-21 90-108 (131)
39 2r91_A 2-keto-3-deoxy-(6-phosp 29.3 69 0.0023 32.2 5.8 56 279-334 223-284 (286)
40 1w3i_A EDA, 2-keto-3-deoxy glu 25.6 94 0.0032 31.4 6.1 54 278-331 223-282 (293)
41 1a62_A RHO; transcription term 25.2 59 0.002 29.2 3.9 36 66-101 2-39 (130)
42 2wkj_A N-acetylneuraminate lya 25.1 83 0.0028 31.9 5.6 53 279-331 242-300 (303)
43 2riq_A Poly [ADP-ribose] polym 24.9 79 0.0027 29.6 4.9 38 5-42 42-79 (160)
44 2nuw_A 2-keto-3-deoxygluconate 24.7 1E+02 0.0035 31.0 6.1 54 278-331 221-280 (288)
45 3b4u_A Dihydrodipicolinate syn 22.4 1.5E+02 0.005 29.9 6.8 55 277-331 228-289 (294)
46 3l21_A DHDPS, dihydrodipicolin 22.3 75 0.0026 32.3 4.6 52 279-330 244-300 (304)
47 2yxg_A DHDPS, dihydrodipicolin 22.3 1E+02 0.0036 30.9 5.6 52 279-330 230-286 (289)
48 2rfg_A Dihydrodipicolinate syn 22.1 1.1E+02 0.0037 31.0 5.7 52 279-330 231-287 (297)
49 3dz1_A Dihydrodipicolinate syn 21.1 94 0.0032 31.7 5.1 54 278-331 243-303 (313)
50 3eb2_A Putative dihydrodipicol 20.6 99 0.0034 31.3 5.1 53 279-331 235-292 (300)
51 2jx3_A Protein DEK; alpha heli 20.4 48 0.0016 30.0 2.3 36 4-39 74-109 (131)
No 1
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A
Probab=100.00 E-value=4.9e-133 Score=1103.93 Aligned_cols=489 Identities=42% Similarity=0.731 Sum_probs=431.4
Q ss_pred ccceeeeeccCccccCCCCCccccCceEEEEeCCeeEEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeeccccC-
Q 006901 123 DEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMK- 201 (626)
Q Consensus 123 ~~~~~~~~~k~~~~vD~~~~~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~- 201 (626)
.++.++++.||+++|||.|+. ++++|||++++.+|+|+|++||+++|+|+||+||||+++.++.|+|||||||||+.
T Consensus 3 ~~~~~~~~~kg~~~Vd~~~~~--~~~~~Vy~~~~~~Y~~~L~~td~~~n~NkfY~lQll~~~~~~~y~v~~rWGRVG~~~ 80 (506)
T 4dqy_C 3 SEKRMKLTLKGGAAVDPDSGL--EHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTVI 80 (506)
T ss_dssp ------------CCCCGGGSC--TTTSCCCEETTEESEEEEEEECTTTCCEEEEEEECC--------CEEEEEEETTSSC
T ss_pred CCceEEEEEeCCeecCCccCC--CCceEEEEeCCeEEEEEEEcccccCCCcceEEEEEEEcCCCCEEEEEEEECccCccc
Confidence 456788999999999999864 46899999999999999999999999999999999998888899999999999995
Q ss_pred CCceeecCCCCHHHHHHHHHHHHHHHhhcccccCCCCccCCCCceeeeecccccccchhhhccCCCCccCCCCCCCCCcH
Q 006901 202 GQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEP 281 (626)
Q Consensus 202 Gq~k~~~pf~s~e~Ai~~F~kkF~eKTgn~W~~R~~F~~~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~skL~~ 281 (626)
||+++. +|+++++|+++|+++|++||||+|++| +|+++||||++||+||+.++++.. +.. .....+|+|++
T Consensus 81 Gq~~l~-~~~s~~~Ai~~F~k~F~~KTgn~W~~R-~f~k~pgKy~~ve~d~~~~~~~~~----~~~---~~~~~~s~L~~ 151 (506)
T 4dqy_C 81 GSNKLE-QMPSKEDAIEHFMKLYEEKTGNAWHSK-NFTKYPKKFYPLEIDYGQDEEAVK----KLT---VNPGTKSKLPK 151 (506)
T ss_dssp EEEEEE-CCSCSHHHHHHHHHHHHHHHSSCSSCS-SCCCCTTCCEEECBC------------------------CCCSCH
T ss_pred ccceec-cCCCHHHHHHHHHHHHHHHhcCCcccc-CccccCCccceeecccccchhhhh----hhc---ccCCCCCCCCH
Confidence 888875 689999999999999999999999999 999999999999999975433221 010 11234799999
Q ss_pred HHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCC-ChhHHHHhhhhccccccCCCCCC
Q 006901 282 CVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPP-DRRKLEELSGEFYTVIPHDFGFK 360 (626)
Q Consensus 282 ~Vq~li~lI~d~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~-~~~~l~~lsn~fYtlIPh~fg~~ 360 (626)
+||+||++|||+++|+++|.+|++|+.+||||+||++||.+||+||++|+++|++. ..+.+.+|||+|||+|||+||++
T Consensus 152 ~Vq~Li~lIfd~~~~~~~m~~~~~D~~k~PLGkLS~~qI~~g~~vL~~i~~~l~~~~~~~~l~~lsn~fYtlIPh~fg~~ 231 (506)
T 4dqy_C 152 PVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMK 231 (506)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTTBCCSSTTTSCBCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCBCCTTS
T ss_pred HHHHHHHHHhHHHHHHHHHHHhCCChhhCCCccCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhEeCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999875 45789999999999999999987
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhhcc-ccCCChhHHHhccCcEEEEcCCCCHHHHHHHHHHhcccCCC
Q 006901 361 KMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTE-IQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKT 439 (626)
Q Consensus 361 ~~~~~vi~~~~~lk~k~~lle~L~dIeiA~~ll~~~~~-~~~~Pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~t 439 (626)
+||+|++.++|+++++||++|.|||+|++|++.+.. ...||+|++|++|+|+|++|+++|+||++|++||.+|++++
T Consensus 232 --~pp~i~~~~~l~~k~~ll~~L~dieiA~~l~~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~~~~~T~~~~ 309 (506)
T 4dqy_C 232 --KPPLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATT 309 (506)
T ss_dssp --CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTSCHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHTCCSS
T ss_pred --CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHhCcEEEECCCCChHHHHHHHHHHhccCcc
Confidence 579999999999999999999999999999986532 45899999999999999999999999999999999999999
Q ss_pred CCCcccccceeEEEecchhhHHHHhhcCCCCceeEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeeccccccccc
Q 006901 440 HSAYSVDIVQIFRVEREGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSA 519 (626)
Q Consensus 440 h~~~~~~I~~IfrV~r~~e~~rF~~~~~~~N~~LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~ 519 (626)
|..++++|.+||||+|++++++|+.+++.+|+++|||||+.+||++||++||+++|++++.+|+|||+|||||+++|||+
T Consensus 310 h~~~~~~I~~I~rI~~~~e~~~f~~~k~~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~askS~ 389 (506)
T 4dqy_C 310 HNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSA 389 (506)
T ss_dssp CTTCCCCEEEEEEEEETTTTTTTHHHHSSSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSHHHHH
T ss_pred cccCCceeEeEEEEccHHHHhhHHHhhcCCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchhhccc
Confidence 98889999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceEEEEEEeecccceeeccccCCCCCCCCCCeeecccCCcCCCCCCceeccCCeEecCCCccccCCCCcc
Q 006901 520 NYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGH 599 (626)
Q Consensus 520 ~Y~~~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~~~~~~ 599 (626)
+||+++..++.++||||+|+||++++++.+++ ...||+|||||+|+|++.|||+++ ++.|||.||+|+|++++...++
T Consensus 390 ~Y~~~~~~~~~~~mll~~V~lG~~~~~~~~~~-~~~~p~G~dSv~g~g~~~P~p~~~-~~~dGv~vP~G~~~~~~~~~~~ 467 (506)
T 4dqy_C 390 NYCHTSQGDPIGLILLGEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDPSAN-ISLDGVDVPLGTGISSGVNDTS 467 (506)
T ss_dssp TTSCCCSSSCEEEEEEEEEECCSEEEESSCCC-CSSCCTTCCEEEECCSEEECGGGC-EESSSCEECCCCEEECSCCCCS
T ss_pred cccCCCCCCCeEEEEEEEEecCCceecccchh-hhccCCCCceEEeCCcCcCCcccc-cccCCeEEECCCcccCCCCCCc
Confidence 99998877789999999999999999998885 589999999999999999999988 7889999999999998888889
Q ss_pred CcCceEEEeeCCceeeeeEEEEEEEeC
Q 006901 600 LLYNEYIVYSVDQIRMRYVVQVNFKYK 626 (626)
Q Consensus 600 l~ynEyIVYd~~Qvr~rYLV~~k~~~~ 626 (626)
|.||||||||++||||||||+|+|+|+
T Consensus 468 l~ynEyiVYd~~Qir~rYLv~v~~~~~ 494 (506)
T 4dqy_C 468 LLYNEYIVYDIAQVNLKYLLKLKFNFK 494 (506)
T ss_dssp CSBCEEEESSGGGEEEEEEEEEECCCC
T ss_pred ccccceEEEchHHeeEEEEEEEEEEcc
Confidence 999999999999999999999999985
No 2
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A
Probab=100.00 E-value=8.5e-98 Score=793.74 Aligned_cols=345 Identities=51% Similarity=0.881 Sum_probs=325.9
Q ss_pred CCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCh-hHHHHhhhhcccccc
Q 006901 276 NTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDR-RKLEELSGEFYTVIP 354 (626)
Q Consensus 276 ~skL~~~Vq~li~lI~d~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~-~~l~~lsn~fYtlIP 354 (626)
+|+|+++||+||++|||+++|+++|++|+||++|||||+||++||.+||++|++|+++|++... +.+.+|||+|||+||
T Consensus 20 ~skL~~~vq~li~lIfd~~~~~~~m~~~~~D~~k~PLGkLSk~qI~~g~~vL~~i~~~l~~~~~~~~l~~lsn~fYtlIP 99 (368)
T 3kjd_A 20 FQSMDLRVQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQHGRALMEACNEFYTRIP 99 (368)
T ss_dssp HCCCCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHSC
T ss_pred cccCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCccccCHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhCC
Confidence 6999999999999999999999999999999999999999999999999999999999987653 689999999999999
Q ss_pred CCCCCCccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhhccccCCChhHHHhccCcEEEEcCCCCHHHHHHHHHHhc
Q 006901 355 HDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLN 434 (626)
Q Consensus 355 h~fg~~~~~~~vi~~~~~lk~k~~lle~L~dIeiA~~ll~~~~~~~~~Pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~~ 434 (626)
|+||++ +||+|+|.++|++|++|||+|.|||+|++|++.......||+|.+|++|+|+|++|+++|+||++|++||.+
T Consensus 100 h~fg~~--~pp~I~~~~~l~~k~~lle~L~dieiA~~l~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~y~~~ 177 (368)
T 3kjd_A 100 HDFGLR--TPPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSPEHPLDQHYRNLHCALRPLDHESYEFKVISQYLQS 177 (368)
T ss_dssp BCCTTS--CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHC----CCSCHHHHHHHHHTEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccccCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhcCcEEEEcCCCChHHHHHHHHHHh
Confidence 999987 579999999999999999999999999999987655568999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccceeEEEecchhhHHHHhhcCCCCceeEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeecccc
Q 006901 435 THAKTHSAYSVDIVQIFRVEREGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADM 514 (626)
Q Consensus 435 t~~~th~~~~~~I~~IfrV~r~~e~~rF~~~~~~~N~~LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~ 514 (626)
|++++|..++++|.+||||+|.+++++|+ ++.+|+++|||||+.+||++||++||+++|++++.+|+|||+|||||++
T Consensus 178 T~~~~h~~~~~~I~~IfrI~r~~e~~~F~--k~~~N~~lLwHGT~~~n~~~Il~~Gf~~~~~~~~~~g~~fGkGIYFA~~ 255 (368)
T 3kjd_A 178 THAPTHSDYTMTLLDLFEVEKDGEKEAFR--EDLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYFADM 255 (368)
T ss_dssp TCCTTCTTCEEEEEEEEEEEETTHHHHSC--TTCSCEEEEEEECCGGGHHHHHHHCSCCCCTTSCGGGSTTCSSEEEBSS
T ss_pred cCCcccCcCceeEEEEEEecchHHHHHHh--hcCCCceEEEeCCCHHHHHHHHHcCCCcccccccccCceeeeEEEcccc
Confidence 99999988899999999999999999998 5789999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCceEEEEEEeecccceeeccccCCCCCCCCCCeeecccCCcCCCCCCceeccCCeEecCCCccccC
Q 006901 515 FSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQL 594 (626)
Q Consensus 515 ~sKS~~Y~~~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~ 594 (626)
++||++||.++..++.++||||+|+||++++++.+++++.+||+|||||+|+|++.|+|++++++ |||+||+|++++.+
T Consensus 256 ~skS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~pP~G~dSv~g~G~~~P~~~~~~~~-dgv~vP~G~~~~~~ 334 (368)
T 3kjd_A 256 SSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTL-NGSTVPLGPASDTG 334 (368)
T ss_dssp HHHHHHTTCCCSSSCEEEEEEEEEECCSEEEESSCCTTGGGGCTTCCEEEECEEEEECGGGCEEE-TTEEECCSCEEECC
T ss_pred ccccccccCCCCCCCeEEEEEEEEecCCceeccccCcccccCCCCCceEEeeCCCcCCccccccc-CCEEeeCCCcccCC
Confidence 99999999987677899999999999999999999998899999999999999999999999888 99999999999877
Q ss_pred CCC---ccCcCceEEEeeCCceeeeeEEEEEEEe
Q 006901 595 NSK---GHLLYNEYIVYSVDQIRMRYVVQVNFKY 625 (626)
Q Consensus 595 ~~~---~~l~ynEyIVYd~~Qvr~rYLV~~k~~~ 625 (626)
... .+|.||||||||++||||||||+|+|+|
T Consensus 335 ~~~~~~~~L~ynEyIVYd~~Qir~rYLv~v~~~~ 368 (368)
T 3kjd_A 335 ILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFNF 368 (368)
T ss_dssp CCCSSSCCEEECEEEESSGGGEEEEEEEEEEEEC
T ss_pred CCCCcCccccCCceEEechhHeeEEEEEEEEeEC
Confidence 543 3699999999999999999999999998
No 3
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Probab=100.00 E-value=7.6e-94 Score=762.77 Aligned_cols=347 Identities=48% Similarity=0.811 Sum_probs=330.0
Q ss_pred CCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCC-hhHHHHhhhhcccccc
Q 006901 276 NTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPD-RRKLEELSGEFYTVIP 354 (626)
Q Consensus 276 ~skL~~~Vq~li~lI~d~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~-~~~l~~lsn~fYtlIP 354 (626)
+|+|+++||+||++|||+++|+++|.+|++|+.+||||+||++||.+||+||++|+++|++.. .+.+.+|||+|||+||
T Consensus 1 ~s~L~~~v~~li~~i~~~~~~~~~~~~~~~d~~k~PlGkLs~~qi~~~~~vL~~i~~~l~~~~~~~~l~~ls~~fyt~IP 80 (350)
T 1efy_A 1 KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSDGGSESQILDLSNRFYTLIP 80 (350)
T ss_dssp CCCSCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCcccCCHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHhhcC
Confidence 489999999999999999999999999999999999999999999999999999999997654 4889999999999999
Q ss_pred CCCCCCccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhhcccc-CCChhHHHhccCcEEEEcCCCCHHHHHHHHHHh
Q 006901 355 HDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQ-ADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLL 433 (626)
Q Consensus 355 h~fg~~~~~~~vi~~~~~lk~k~~lle~L~dIeiA~~ll~~~~~~~-~~Pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~ 433 (626)
|+||++ +||+|++.+.|++|++|||+|.|||+|++|++.+.... .||+|.+|++|+|+|++|+++|+||++|++||.
T Consensus 81 h~fg~~--~p~~i~~~~~l~~k~~lle~L~die~A~~l~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~I~~~~~ 158 (350)
T 1efy_A 81 HDFGMK--KPPLLSNLEYIQAKVQMLDNLLDIEVAYSLLRGGNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVK 158 (350)
T ss_dssp BCCCSS--CCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCHHHHHHHHTCEEEEECCTTSHHHHHHHHHHH
T ss_pred ccccCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHhCCEEEEcCCCChHHHHHHHHHh
Confidence 999987 57899999999999999999999999999998765443 799999999999999999999999999999999
Q ss_pred cccCCCCCCcccccceeEEEecchhhHHHHhhcCCCCceeEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeeccc
Q 006901 434 NTHAKTHSAYSVDIVQIFRVEREGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFAD 513 (626)
Q Consensus 434 ~t~~~th~~~~~~I~~IfrV~r~~e~~rF~~~~~~~N~~LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd 513 (626)
+|++++|..++++|.+||||+|++++++|..+++.+|+++|||||+.+||.+||++||+++|++++.+|+|||+|||||+
T Consensus 159 ~t~~~~h~~~~~~I~~I~rV~~~~~~~~f~~~k~~~n~~~L~HGt~~~n~~~Il~~Gf~~~~~~~~~~g~~fG~GiYfa~ 238 (350)
T 1efy_A 159 NTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFAD 238 (350)
T ss_dssp HTCCGGGCSEEEEEEEEEEEEETTHHHHHGGGGGSSCEEEEEEEECGGGHHHHHHHCSCCCCTTSCGGGSTTSSSEEEBS
T ss_pred cccCCCCCCCcccccceEEecCHHHHHHHHHhhccCCeeEEEeCCchHHHHHHHHcCCCcccccCCCccCceeccccccc
Confidence 99999998789999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCceEEEEEEeecccceeeccccCCCCCCCCCCeeecccCCcCCCCCCceeccCCeEecCCCcccc
Q 006901 514 MFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQ 593 (626)
Q Consensus 514 ~~sKS~~Y~~~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~ 593 (626)
+++||++||.++..++.++||||+|+||++.++..+++ +.+||+|+|||+|+|++.|||++ ..+.|||+||+|+++++
T Consensus 239 ~~skS~~Y~~~~~~~~~~~m~Lc~V~lG~~~~~~~~~~-~~~~p~g~~Sv~g~g~~~Pd~~~-~~~~dgv~vP~G~~~~~ 316 (350)
T 1efy_A 239 MVSKSANYCHTSQADPIGLILLGEVALGNMYELKNASH-ITKLPKGKHSVKGLGKTAPDPTA-TTTLDGVEVPLGNGIST 316 (350)
T ss_dssp SHHHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCC-CCSCCTTCCEEEECCSEEECGGG-CEEETTEEECCSCEEEC
T ss_pred chhhhhccccCCCCCCeEEEEEEEEecCCceeccCcch-hhhcCCCCcceeeccccCCCccc-cccCCCeeeecCcccCC
Confidence 99999999998777789999999999999999999998 78999999999999999999998 67789999999999987
Q ss_pred CCCCccCcCceEEEeeCCceeeeeEEEEEEEeC
Q 006901 594 LNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 626 (626)
Q Consensus 594 ~~~~~~l~ynEyIVYd~~Qvr~rYLV~~k~~~~ 626 (626)
...+++|.||||||||++||+|||||+|+|+|+
T Consensus 317 ~~~~~~l~~~EyVVYd~~Qi~p~YLI~~~~~~~ 349 (350)
T 1efy_A 317 GINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 349 (350)
T ss_dssp SCCSSSCSBCEEEESCGGGEEEEEEEEEEEEEC
T ss_pred CCCCCCCCCCEEEEEchhheeEEEEEEEEEEec
Confidence 777788999999999999999999999999996
No 4
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*
Probab=100.00 E-value=6.4e-88 Score=719.29 Aligned_cols=339 Identities=37% Similarity=0.634 Sum_probs=314.8
Q ss_pred CCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCh--hHHHHhhhhcccc
Q 006901 275 RNTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDR--RKLEELSGEFYTV 352 (626)
Q Consensus 275 ~~skL~~~Vq~li~lI~d~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~--~~l~~lsn~fYtl 352 (626)
.+|+|+++||+||++|||+++|+++|.+|+||+.+||||+||++||.+||+||++|+++|++... ..+.+|||+|||+
T Consensus 6 ~~s~L~~~v~~li~~i~~~~~~~~~~~~~~~d~~k~PlGkLs~~qi~~g~~vL~~i~~~l~~~~~~~~~~~~ls~~fyt~ 85 (357)
T 3c4h_A 6 QPCSLDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEALKGPTDGGQSLEELSSHFYTV 85 (357)
T ss_dssp CCCCSCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCTTTCCHHHHHHHHHHHHHHHHHHTSCCCSCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCcccCCHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 37999999999999999999999999999999999999999999999999999999999987654 3499999999999
Q ss_pred ccCCCCCCccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhhcccc-----CCChhHHHhccCcEEEEcCCCCHHHHH
Q 006901 353 IPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQ-----ADPLYSHYQRLHCQLTPLEVDSLEFSL 427 (626)
Q Consensus 353 IPh~fg~~~~~~~vi~~~~~lk~k~~lle~L~dIeiA~~ll~~~~~~~-----~~Pld~~Y~~L~~~l~~L~~~s~Eyk~ 427 (626)
|||+||++ +||+|++.+.|++|++|||+|.|||+|++|++.+.... .||+|++|++|+|+|++|+++|+||++
T Consensus 86 IPh~fg~~--~p~~i~~~~~l~~k~~lle~l~di~~a~~l~~~~~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~ 163 (357)
T 3c4h_A 86 IPHNFGHS--QPPPINSPELLQAKKDMLLVLADIELAQALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKV 163 (357)
T ss_dssp SCBCSTTS--CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCSEECCHHHHHHHHHCCEEEECCTTSTTHHH
T ss_pred cCcccCCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCChhHHHHHHhCCEEEECCCCChHHHH
Confidence 99999987 57899999999999999999999999999998653333 799999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCcccccceeEEEecchhhHHHHhhcCCCCceeEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeee
Q 006901 428 IANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGK 507 (626)
Q Consensus 428 I~~y~~~t~~~th~~~~~~I~~IfrV~r~~e~~rF~~~~~~~N~~LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGk 507 (626)
|++||.+| +++|.. ++|.+||||+|.+++++|..+++.+|+++|||||+.+||.+|+++||+++|+ +|+|||+
T Consensus 164 I~~~f~~t-~~~~~~--~~I~~I~rV~n~~~~~rF~~~k~~~n~~~LfHGt~~~~~~~I~~~Gf~~~~~----~g~~fG~ 236 (357)
T 3c4h_A 164 IQTYLEQT-GSNHRC--PTLQHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRIMPH----SGGRVGK 236 (357)
T ss_dssp HHHHHHHH-SCSSSC--CCEEEEEEEECTTSHHHHHTTTTCCCEEEEEEEECHHHHHHHHHHCSCCCTT----CCCTTCS
T ss_pred HHHHHHhc-CCCCCC--ccEEEEEEecCHHHHHHHHHHhccCCeEEEEeCCChhhHHHHHHcCCcccCC----CCCceEC
Confidence 99999999 777753 8999999999999999999988899999999999999999999999999764 8999999
Q ss_pred eeeccccccccccccc--CCCCCCceEEEEEEeecccceeeccccCCCCCCCCCCeeecccCCcCCCCCCceecc-CC--
Q 006901 508 GVYFADMFSKSANYCY--ASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLE-DG-- 582 (626)
Q Consensus 508 GIYFAd~~sKS~~Y~~--~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~-dG-- 582 (626)
|||||+++++|++||. ++..++.++||||+|+||++++++.+++++..||+|+|||+|+|++.|||++.+.+. ||
T Consensus 237 GiYfa~~~skS~~Y~~~~~~~~~~~~~mllc~V~lG~~~~~~~~~~~~~~pP~g~dSv~g~g~~~P~~~~~~~~~~dg~~ 316 (357)
T 3c4h_A 237 GIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQQ 316 (357)
T ss_dssp SEEEBSSHHHHHTTCCCEEETTEEEEEEEEEEEECCSEEEESSCCTTCSSCCTTCSEEEECCSEEECGGGCEEEEETTEE
T ss_pred CEecCCcchhhhhhcccCCCCCCCeEEEEEEEEecCCceeccCCchhccCCCCCCCccceecCCCCCcccceeeccCCCe
Confidence 9999999999999998 545567899999999999999999999988899999999999999999999988876 99
Q ss_pred eEecCCCccccCC-CCccCcCceEEEeeCCceeeeeEEEEE
Q 006901 583 VIVPLGKPKEQLN-SKGHLLYNEYIVYSVDQIRMRYVVQVN 622 (626)
Q Consensus 583 v~vP~Gk~~~~~~-~~~~l~ynEyIVYd~~Qvr~rYLV~~k 622 (626)
|+||+|++++.+. .+++|.||||||||++||+|||||+|+
T Consensus 317 v~vp~G~~v~~~~~~~~~l~~nEyVVYd~~Qv~p~YLi~~k 357 (357)
T 3c4h_A 317 VVVPQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRYLLEVH 357 (357)
T ss_dssp EEECCSCEEECGGGTTCSCSBCEEEESSGGGEEEEEEEEEC
T ss_pred EEecCCCcccCCCCCCCccCCCEEEEEchhheeEEEEEEEC
Confidence 9999999998753 457899999999999999999999985
No 5
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=314.29 Aligned_cols=167 Identities=17% Similarity=0.231 Sum_probs=145.4
Q ss_pred ccCcEEEEcCCCCHHHHHHHHHHhcccCCCCCCcccccceeEEEecchhhHHHHhhcC--CCCceeEEecCCCCCHHHHH
Q 006901 410 RLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKFSN--SKNRMLLWHGSRLTNWTGIL 487 (626)
Q Consensus 410 ~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~th~~~~~~I~~IfrV~r~~e~~rF~~~~~--~~N~~LLwHGTr~~N~~gIL 487 (626)
.++|.|++|+++|+||++|+++|.+|+. .++|.+||||+++.++++|..+++ ..|+++|||||+.+|+.+|+
T Consensus 2 ~~~~~l~~L~~~s~ey~~v~~~f~~t~~------~~~I~~I~rv~n~~~~~~f~~~k~~~~~n~~~l~HGt~~~~~~~I~ 75 (173)
T 2x5y_A 2 SKKYKLSEIHHLHPEYVRVSEHFKASMK------NFKIEKIKKIENSELLDKFTWKKSQMKEEGKLLFYATSRAYVESIC 75 (173)
T ss_dssp -CCCEEEECCTTSHHHHHHHHHHHTTCT------TEEEEEEEEEECHHHHHHHHHHHHHHTCCCEEEEEEEEGGGHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHhHCC------CCEEeEEEEECCHHHHHHHHHHHHHHhhCcEEEEecCCcccHHHHH
Confidence 4789999999999999999999999874 478999999999999999998754 57999999999999999999
Q ss_pred hcCCC--CCCCCCCCCcceeeeeeecccccccccccccCCCCCCceEEEEEEeecccceeeccccCCCCCCCCCCeeecc
Q 006901 488 SQGLR--IAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKG 565 (626)
Q Consensus 488 ~~GLr--iap~ea~~tG~mfGkGIYFAd~~sKS~~Y~~~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p~G~~Sv~g 565 (626)
++||. +++ .+|+|||+|||||+++++|++||.++. +.++||||+|++|+.. ..+..+..||+|||||.|
T Consensus 76 ~~Gf~~~~~~----~~g~~~G~GiYfa~~~s~s~~Y~~~~~--~~~~m~lc~V~~G~~~---~~~~~~~~pp~~ydSv~~ 146 (173)
T 2x5y_A 76 SNNFDSFLHE----THENKYGKGIYFAKDAIYSHKNCPYDA--KNVVMFVAQVLVGKFI---EGNITYTSPPPQFDSCVD 146 (173)
T ss_dssp HHCCCHHHHC----CSCSSSCSSEEEESSHHHHHHHCCSCG--GGEEEEEEEECCCSEE---ECCTTCSSCCTTCCEEES
T ss_pred HhCCCCcccC----CCcCCccCeEECCCChhhHhhcCCCCC--CCeEEEEEEEecCccc---cCCcccCCCCCCCCceEC
Confidence 99995 433 379999999999999999999998764 5699999999999954 344456789999999986
Q ss_pred cCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeeCCceeeeeEEEEEE
Q 006901 566 VGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNF 623 (626)
Q Consensus 566 ~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEyIVYd~~Qvr~rYLV~~k~ 623 (626)
.. ..++||||||.+||+|+|||.|+-
T Consensus 147 ~~--------------------------------~~~~e~VV~~~~q~~P~YlI~y~~ 172 (173)
T 2x5y_A 147 TR--------------------------------SNPSVFVIFQKDQVYPQYVIEYTE 172 (173)
T ss_dssp CS--------------------------------SSCCEEEECCGGGEEEEEEEEEEE
T ss_pred CC--------------------------------CCCCEEEEEeCCeEeEEEEEEEeC
Confidence 41 125899999999999999999873
No 6
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...
Probab=100.00 E-value=1.5e-38 Score=322.05 Aligned_cols=179 Identities=27% Similarity=0.385 Sum_probs=150.8
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHhcccCCCCCC-------cccccceeEEEecchhhHHHHhhc--------CCCCceeEE
Q 006901 411 LHCQLTPLEVDSLEFSLIANYLLNTHAKTHSA-------YSVDIVQIFRVEREGETERFRKFS--------NSKNRMLLW 475 (626)
Q Consensus 411 L~~~l~~L~~~s~Eyk~I~~y~~~t~~~th~~-------~~~~I~~IfrV~r~~e~~rF~~~~--------~~~N~~LLw 475 (626)
.+|.|++|+++|+||++|++||.+|++..|.. +.+.|.+|+||+|+.++++|+.++ ..+|+++||
T Consensus 29 ~~~~l~~L~~~s~Ey~~V~~~f~~T~~~~~~~~~~~~~~~~~~I~~I~rIqn~~l~~~y~~~k~~m~~~~~~~~ne~~Lf 108 (240)
T 3u9h_A 29 SGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLF 108 (240)
T ss_dssp -CCEEEECCTTSHHHHHHHHHHHHTCCCCTTTTTTTCSCSCEEEEEEEEEECHHHHHHHHHHHHHHHHTTTTCCCEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHHHhcccccccccccccccCCcEEEEEEEecCHhHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 46899999999999999999999999753321 478999999999999999998653 468999999
Q ss_pred ecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeecccccccccccccCCCC-------------CCceEEEEEEeeccc
Q 006901 476 HGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPS-------------ATAGVLLLCEVALGD 542 (626)
Q Consensus 476 HGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~~Y~~~~~~-------------~~~~~mlLceVaLGk 542 (626)
|||+ ++.+|+++||+++. +.+|+|||+|||||++++||++||.+... .+.++||||+|+||+
T Consensus 109 HGt~--~~~~I~~~Gf~~~~---~~~g~~~G~GiYfa~~~s~S~~y~~~~~~~~~~~~~~d~~~~~~~~~mlLc~V~lG~ 183 (240)
T 3u9h_A 109 HGSP--FVNAIIHKGFDERH---AYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGK 183 (240)
T ss_dssp ECCT--THHHHHHHCCCGGG---CBTTSTTCSBEEEESSHHHHHTTTTSGGGTTCCTTTCCTTCSSSCEEEEEEEEECCS
T ss_pred echH--hHHHHHHcCCCccc---ccCCCcceeeEEecCChhhhhhhhhccccccccccccccccccCceEEEEEEEecCc
Confidence 9998 57799999999863 34689999999999999999999975310 257999999999999
Q ss_pred ceeeccccCCCCCCCCCCeeecccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeeCCceeeeeEEEEE
Q 006901 543 MSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVN 622 (626)
Q Consensus 543 ~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEyIVYd~~Qvr~rYLV~~k 622 (626)
+.+...+.. ...||+|||||.|... ..+|.|+|||||+++||+|+|||+|+
T Consensus 184 ~~~~~~~~~-~~~pP~gyDSvvg~~~----------------------------~~~l~~~E~VVy~~~qi~P~YlI~y~ 234 (240)
T 3u9h_A 184 SFLQFSAMK-MAHSPPGHHSVTGRPS----------------------------VNGLALAEYVIYRGEQAYPEYLITYQ 234 (240)
T ss_dssp EEEEEECC---CCCCTTCSEEEEEES----------------------------SCTTCCCEEEESCGGGEEEEEEEEEE
T ss_pred eEeecCccc-ccCCCCCCCceecCCC----------------------------CCCCCCCEEEEEcccceeEEEEEEEE
Confidence 999887654 4678999999998521 12578999999999999999999998
Q ss_pred E
Q 006901 623 F 623 (626)
Q Consensus 623 ~ 623 (626)
+
T Consensus 235 ~ 235 (240)
T 3u9h_A 235 I 235 (240)
T ss_dssp E
T ss_pred c
Confidence 5
No 7
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=306.54 Aligned_cols=169 Identities=20% Similarity=0.211 Sum_probs=141.1
Q ss_pred ccCcEEEEcCCCCHHHHHHHHHHhcccCCCCCCcccccceeEEEecchhhHHHHhhcC---------CCCceeEEecCCC
Q 006901 410 RLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKFSN---------SKNRMLLWHGSRL 480 (626)
Q Consensus 410 ~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~th~~~~~~I~~IfrV~r~~e~~rF~~~~~---------~~N~~LLwHGTr~ 480 (626)
.++|.|++|+++|+||+.|+++|.+|++ .++|.+|+||++..++++|..++. ..|+++|||||+.
T Consensus 9 ~~~~~l~~L~~~s~Ey~~v~~~f~~t~~------~~~I~~I~rv~n~~l~~~f~~~k~~~~~~~~~~~~ne~~LfHGt~~ 82 (198)
T 2pqf_A 9 DPGFQKITLSSSSEEYQKVWNLFNRTLP------FYFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSA 82 (198)
T ss_dssp CCSCEEEECCTTSHHHHHHHHHHHTTCT------TSEEEEEEEEECHHHHHHHHHHHHHHHHTTTTCCCCEEEEEEECCG
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCC------CCEEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEecCCH
Confidence 5789999999999999999999999875 368999999999999999986531 3699999999999
Q ss_pred CCHHHHHhcCCCCCCCCCCCCcceeeeeeecccccccccccccCCCCCCceEEEEEEeecccceeeccccCCCCCCCCC-
Q 006901 481 TNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDG- 559 (626)
Q Consensus 481 ~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~~Y~~~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p~G- 559 (626)
+|+.+|+++||+++. ++.+|+|||+|||||++++||++||.++. +.++||||+|+||++.. .+.....||++
T Consensus 83 ~~~~~I~~~Gf~~~~--~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~--~~~~m~lcrV~~G~~~~---~~~~~~~pp~~~ 155 (198)
T 2pqf_A 83 IFVDAICQQNFDWRV--CGVHGTSYGKGSYFARDAAYSHHYSKSDT--QTHTMFLARVLVGEFVR---GNASFVRPPAKE 155 (198)
T ss_dssp GGHHHHHHHCCCTTT--TCCCSSCSCSSEEEESSHHHHHTTCCCSS--SEEEEEEEEEECCSEEE---CCTTCSSCCBCS
T ss_pred HHHHHHHHhCCCCcc--cCCCCCcccCeEECcCCcchhhhcccCCC--CceEEEEEEEecCCccc---CCccccCCCCCC
Confidence 999999999998653 34579999999999999999999998764 88999999999999864 33333455554
Q ss_pred ------CeeecccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeeCCceeeeeEEEEEE
Q 006901 560 ------KLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNF 623 (626)
Q Consensus 560 ------~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEyIVYd~~Qvr~rYLV~~k~ 623 (626)
||||.+- ...++||||||.+||+|+|||+|+.
T Consensus 156 ~~~~~~yDSvv~~--------------------------------~~~~~e~VVy~~~qiyP~YlI~y~~ 193 (198)
T 2pqf_A 156 GWSNAFYDSCVNS--------------------------------VSDPSIFVIFEKHQVYPEYVIQYTT 193 (198)
T ss_dssp CC--CBCSEEESC--------------------------------SSSCCEEEESCGGGEEEEEEEEEES
T ss_pred CCCCCCcccCcCC--------------------------------CCCCCEEEEECCCcEeeEEEEEEEc
Confidence 4554331 0126899999999999999999974
No 8
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=276.56 Aligned_cols=121 Identities=40% Similarity=0.670 Sum_probs=111.6
Q ss_pred eeeeeccCccccCCCCCccccCceEEEEeCCeeEEEEEeecccCCCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCce
Q 006901 126 IVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDK 205 (626)
Q Consensus 126 ~~~~~~k~~~~vD~~~~~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~k 205 (626)
..++++||.++|||.||......+|||+| |+|+|++||+++|+|+||+|||++++.++ |+||++|||||+.||++
T Consensus 4 ~~~~~~k~~~~VD~~~~~~~~~~~~V~~d----y~~~L~~~d~~~n~nrfY~lQll~~~~g~-~~v~~~WGRIG~~Gq~~ 78 (124)
T 2eoc_A 4 GSSGAEKRIIRVDPTCPLSSNPGTQVYED----YNCTLNQTNIENNNNKFYIIQLLQDSNRF-FTCWNRWGRVGEVGQSK 78 (124)
T ss_dssp CCCCSCCCCCCCCSSSSTTTSTTCEEEEE----EEEEEEEEETTTTEEEEEEEEEEECTTSC-EEEEEECSCTTSCCCCE
T ss_pred cccceecCCcccCCCccccccCCcEEeEe----EEEEEEeecCCCCceeEEEEEEEecCCce-EEEEEEECCCCCCCceE
Confidence 34678899999999998765458999987 99999999999999999999999986554 99999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHHHHHhhcccccCCCCccCCCCceeeeecc
Q 006901 206 IFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDY 252 (626)
Q Consensus 206 ~~~pf~s~e~Ai~~F~kkF~eKTgn~W~~R~~F~~~pgKY~~ve~d~ 252 (626)
+. +|.++++|+++|+++|++||||+|++|.+|+++||||+|||+||
T Consensus 79 ~~-~~~s~~~A~~~F~k~f~~Ktgn~w~~r~~f~~~pgky~~~e~d~ 124 (124)
T 2eoc_A 79 IN-HFTRLEDAKKDFEKKFREKTKNNWAERDHFVSHPGKYTLIEVQA 124 (124)
T ss_dssp EE-EESSHHHHHHHHHHHHHHHHSSCSTTGGGCCCCSSSCEEECCCC
T ss_pred ee-cCCCHHHHHHHHHHHHHHHHcCCcccccCcccCCCceeEEEecC
Confidence 76 68999999999999999999999999999999999999999986
No 9
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*
Probab=100.00 E-value=4.1e-36 Score=300.94 Aligned_cols=170 Identities=21% Similarity=0.210 Sum_probs=137.8
Q ss_pred hccCcEEEEcCCCCHHHHHHHHHHhcccCCCCCCcccccceeEEEecchhhHHHHhhc--------CCCCceeEEecCCC
Q 006901 409 QRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKFS--------NSKNRMLLWHGSRL 480 (626)
Q Consensus 409 ~~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~th~~~~~~I~~IfrV~r~~e~~rF~~~~--------~~~N~~LLwHGTr~ 480 (626)
...+|.|++|+++++||+.|+++|.+|++ .++|.+|+||++..++++|+.++ ..+|+++|||||+.
T Consensus 33 ~~~~~~l~~L~~~s~ey~~V~~~f~~t~~------~~~I~~I~rV~n~~l~~~f~~~k~~~~~k~~~~~ne~lLfHGt~~ 106 (221)
T 3blj_A 33 NHQLFCMVQLEPGQSEYNTIKDKFTRTCS------SYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKNNERLLFHGTDA 106 (221)
T ss_dssp TTCSEEEEECCTTSHHHHHHHHHHHHHHT------TSEEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCCCEEEEEEEECG
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHhhCC------CCEEEEEEEEcChhHHHHHHHHHHHHHHhcCCCCceEEEeccCCh
Confidence 34579999999999999999999999985 36899999999999999998653 35899999999999
Q ss_pred CCHHHHHhcCCCCCCCCCCCCcceeeeeeecccccccccc--cccCCCCCCceEEEEEEeecccceeeccccCCCCCCC-
Q 006901 481 TNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSAN--YCYASPSATAGVLLLCEVALGDMSELLYANYDADKLP- 557 (626)
Q Consensus 481 ~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~~--Y~~~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p- 557 (626)
+|+++|+++||+. +.++.+|+|||+|||||++++||++ ||.++ .++.++||||+|++|++..- +..+..||
T Consensus 107 ~~~~~I~~~Gf~~--~~a~~~g~~~G~GiYfa~~~s~S~~~~Y~~~~-~~g~~~mllcrV~~G~~~~g---~~~~~~pp~ 180 (221)
T 3blj_A 107 DSVPYVNQHGFNR--SCAGKNAVSYGKGTYFAVDASYSAKDTYSKPD-SNGRKHMYVVRVLTGVFTKG---RAGLVTPPP 180 (221)
T ss_dssp GGHHHHHHHCCCT--TTC-----CCCSSEEEESSHHHHHSTTTSCCC-TTSCEEEEEEEEECCSEEEC---CTTCSSCCB
T ss_pred HHHHHHHHhCCCC--cccCCCCCccCCeEECCcchhhhcCcccccCC-CCCcEEEEEEEEEeCCccCC---ChhccCCCc
Confidence 9999999999995 3456689999999999999999999 77664 35789999999999997532 22223333
Q ss_pred -------CCCeeecccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeeCCceeeeeEEEEE
Q 006901 558 -------DGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVN 622 (626)
Q Consensus 558 -------~G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEyIVYd~~Qvr~rYLV~~k 622 (626)
.|||||.|.. ..++||||||.+||+|+|||.|+
T Consensus 181 ~~~~~~~~~yDSvv~~~--------------------------------~~~~e~VVy~~~qiyP~YlI~y~ 220 (221)
T 3blj_A 181 KNPHNPTDLFDSVTNNT--------------------------------RSPKLFVVFFDNQAYPEYLITFT 220 (221)
T ss_dssp SSTTSTTSBCSEEESCS--------------------------------SSCSEEEECSTTSEEEEEEEEEE
T ss_pred ccCCCCCCCCCccccCC--------------------------------CCCCEEEEEcCCeEeeeEEEEEE
Confidence 3777776421 13689999999999999999986
No 10
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=296.95 Aligned_cols=173 Identities=18% Similarity=0.246 Sum_probs=143.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhcccCCCCCCcccccceeEEEecchhhHHHHhhc--------CCCCceeEEecCCCCCH
Q 006901 412 HCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKFS--------NSKNRMLLWHGSRLTNW 483 (626)
Q Consensus 412 ~~~l~~L~~~s~Eyk~I~~y~~~t~~~th~~~~~~I~~IfrV~r~~e~~rF~~~~--------~~~N~~LLwHGTr~~N~ 483 (626)
-|.|++|+++|+||+.|+++|.+|++.+|. .+.|.+|+||++..++++|+.++ ...|+++|||||+.+|+
T Consensus 10 ~~~L~~L~~~s~Ey~~V~~~F~~t~~~~~~--~~~I~~I~RIqn~~l~~~f~~~k~~m~~k~~~~~ne~~LfHGt~~~~~ 87 (217)
T 3hkv_A 10 WNNLERLAENTGEFQEVVRAFYDTLDAARS--SIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAV 87 (217)
T ss_dssp CCCEEECCSSSHHHHHHHHHHHHTTGGGGG--TEEEEEEEEECCHHHHHHHHHHHHHHHHHCCSSCSEEEEEEEECGGGH
T ss_pred cccceECCCCChHHHHHHHHHHhhcCCcCC--CceEEEEEEECChhHHHHHHHHHHHHHHhcCCCCceEEEEeCCCHHHH
Confidence 389999999999999999999999986653 57899999999999999998653 35799999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCcceeeeeeeccccccccc--ccccCCCCCCceEEEEEEeecccceeeccccCCCCCCCC---
Q 006901 484 TGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSA--NYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPD--- 558 (626)
Q Consensus 484 ~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~--~Y~~~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p~--- 558 (626)
.+|+++||+.+. ++.+|+|||+|||||++++||+ +||.++ .++.++||||+|+||++.. .+..+..||.
T Consensus 88 ~~I~~~GF~~~~--~g~~g~~~G~GiYFA~~~s~S~~~~Y~~~~-~~g~~~m~lcrVl~G~~~~---g~~~~~~PP~~~~ 161 (217)
T 3hkv_A 88 PDICAHGFNRSF--CGRNATVYGKGVYFAKRASLSVQDRYSPPN-ADGHKAVFVARVLTGDYGQ---GRRGLRAPPLRGP 161 (217)
T ss_dssp HHHHHHCSCTTT--SCCCCCTTCSSEEEESSHHHHTSTTTSCCC-TTSEEEEEEEEEECCSEEE---CCTTCSSSCBCCT
T ss_pred HHHHhcCCcccc--cCcchhccccceeccCCccccccccccccc-CCCceEEEEEEEEcccccc---CCCccCCCCCCcc
Confidence 999999997543 3446899999999999999997 698765 4678999999999999643 2223344443
Q ss_pred -----CCeeecccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeeCCceeeeeEEEEEEE
Q 006901 559 -----GKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFK 624 (626)
Q Consensus 559 -----G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEyIVYd~~Qvr~rYLV~~k~~ 624 (626)
+||||.+.- .+++|||||+.+|++|.|||.|+-.
T Consensus 162 ~~~~~~yDSvvd~~--------------------------------~np~~~VVf~~~qiyPeYLI~y~~~ 200 (217)
T 3hkv_A 162 GHVLLRYDSAMDCI--------------------------------CQPSIFVIFHDTQALPTHLITCEHV 200 (217)
T ss_dssp TCSSSBCSEEESCS--------------------------------SSCCEEEECCTTSEEEEEEEEEEEC
T ss_pred CCCCCceeEEECCC--------------------------------CCCCEEEEEcCCcCceeEEEEEecC
Confidence 488887521 2368999999999999999999853
No 11
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*
Probab=100.00 E-value=1.9e-35 Score=290.34 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=139.1
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHhcccCCCCCCcccccceeEEEecchhhHHHHhhc--------CCCCceeEEecCCCCC
Q 006901 411 LHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKFS--------NSKNRMLLWHGSRLTN 482 (626)
Q Consensus 411 L~~~l~~L~~~s~Eyk~I~~y~~~t~~~th~~~~~~I~~IfrV~r~~e~~rF~~~~--------~~~N~~LLwHGTr~~N 482 (626)
-+|.|++|+++|+||+.|+++|.+|+. .++|.+|+||++..++++|+.++ ...|+++|||||+.+|
T Consensus 7 ~~~~l~~L~~~s~Ey~~V~~~f~~t~~------~~~I~~I~rI~n~~l~~~f~~~k~~~~~k~~~~~ne~~L~HGt~~~~ 80 (193)
T 3smj_A 7 QNFCVVELLPSDPEYNTVASKFNQTCS------HFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGS 80 (193)
T ss_dssp CCEEEEECCTTSTTHHHHHHHHHHHHT------TSEEEEEEEEECHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEECGGG
T ss_pred CCEEEEECCCCChHHHHHHHHHHhhCC------CCeEEEEEEECCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCHHH
Confidence 358999999999999999999999874 36899999999999999998653 3579999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCcceeeeeeeccccccccccc--ccCCCCCCceEEEEEEeecccceeeccccCCCCCCCC--
Q 006901 483 WTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANY--CYASPSATAGVLLLCEVALGDMSELLYANYDADKLPD-- 558 (626)
Q Consensus 483 ~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~sKS~~Y--~~~~~~~~~~~mlLceVaLGk~~e~~~~~~~~~~~p~-- 558 (626)
+.+|+++||+... ++.+|+|||+|||||+++++|++| |.+. .++.++||||+|+||+... .+..+..||+
T Consensus 81 ~~~I~~~Gf~~~~--~~~~~~~~G~GiYfa~~~s~S~~~~y~~~~-~~g~~~mllcrV~~G~~~~---g~~~~~~pP~~~ 154 (193)
T 3smj_A 81 VPHVNRNGFNRSY--AGKNAVAYGKGTYFAVNANYSANDTYSRPD-ANGRKHVYYVRVLTGIYTH---GNHSLIVPPSKN 154 (193)
T ss_dssp HHHHHHHTTCCCC--TTGGGSSSCCCEEEESSHHHHTSTTTSCCC-TTSCEEEEEEEEECCSEEE---CCSSCCSCCBSC
T ss_pred HHHHHHcCCCCcc--CCCCccccCCeEEecCCcchhcCccccCCC-CCCcEEEEEEEEEeccccc---CCCccCCCCCcc
Confidence 9999999998543 344689999999999999999994 5443 4678999999999999753 2333344443
Q ss_pred ------CCeeecccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeeCCceeeeeEEEEE
Q 006901 559 ------GKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVN 622 (626)
Q Consensus 559 ------G~~Sv~g~G~~~Pdp~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEyIVYd~~Qvr~rYLV~~k 622 (626)
|||||.|.-. .++|||||+.+||+|.|||.|+
T Consensus 155 ~~~~~~~yDSvv~~~~--------------------------------~p~~~VVf~~~qiyP~YlI~y~ 192 (193)
T 3smj_A 155 PQNPTDLYDTVTDNVH--------------------------------HPSLFVAFYDYQAYPEYLITFR 192 (193)
T ss_dssp TTSTTCBCSEEESCSS--------------------------------SCSEEEECSTTCEEEEEEEEEE
T ss_pred CCCCCCCccceeCCCC--------------------------------CCCEEEEEeCCceeeEEEEEEe
Confidence 5888876310 2479999999999999999986
No 12
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}
Probab=99.84 E-value=2.8e-21 Score=198.11 Aligned_cols=120 Identities=21% Similarity=0.323 Sum_probs=97.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHhcccCCCCCCcccccceeEEEe-cchhhHHHHhhcCCCCceeEEecCCCCCHHHHHhcCC
Q 006901 413 CQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVE-REGETERFRKFSNSKNRMLLWHGSRLTNWTGILSQGL 491 (626)
Q Consensus 413 ~~l~~L~~~s~Eyk~I~~y~~~t~~~th~~~~~~I~~IfrV~-r~~e~~rF~~~~~~~N~~LLwHGTr~~N~~gIL~~GL 491 (626)
..|..|++ .||..|.+++...+.+ ......||+|. +.++.++|+++++..|++++||||+.+||.+||++||
T Consensus 93 ~~l~~l~k--~ef~~l~~~~g~~~~p-----~~~P~~If~V~~~~~~~~~f~~~~~~~~~~~~~HGS~l~n~~sIL~~GL 165 (277)
T 4f0d_A 93 LTIHSAGK--AEFEKIQKLTGAPHTP-----VPAPDFLFEIEYFDPANAKFYETKGERDLIYAFHGSRLENFHSIIHNGL 165 (277)
T ss_dssp EEEEECCS--HHHHHHHHHTCSCSSC-----CCCCSEEEEEEECTTHHHHHHHHHTTSCEEEEEEECCGGGHHHHHHHCS
T ss_pred cceEecCH--HHHHHHHHHhCCCCCC-----CCCCceeEEEecCcchhhHHHHhhccCCcEEEEcCCcHHHHHHHHhccc
Confidence 45666654 5788888876543322 34568999999 7788899999988999999999999999999999999
Q ss_pred CCCCCCCCCCcceeeeeeecccccccccccccCCC---C---C-CceEEEEEEeecccc
Q 006901 492 RIAPPEAPATGYMFGKGVYFADMFSKSANYCYASP---S---A-TAGVLLLCEVALGDM 543 (626)
Q Consensus 492 riap~ea~~tG~mfGkGIYFAd~~sKS~~Y~~~~~---~---~-~~~~mlLceVaLGk~ 543 (626)
+++| .+|+|||+|||||+++++|++||.++. . + ..++|.||||+..-.
T Consensus 166 ~~~~----~~g~~fG~GiY~a~~~~~S~~ys~~~~~W~~S~~g~~~~~valcEvv~~p~ 220 (277)
T 4f0d_A 166 HCHL----NKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPD 220 (277)
T ss_dssp CCC------CCCSSSCCEEEBSCHHHHHTTCCCEECCTTCTTCSEEEEEEEEEEECCCC
T ss_pred ccCc----ccccccCCceEeecchHHHhhhccCCCCcCcccccccceEEEEEEEecCCc
Confidence 9975 489999999999999999999997532 1 1 268999999997543
No 13
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.14 E-value=1.1e-11 Score=116.38 Aligned_cols=89 Identities=26% Similarity=0.347 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhccccCCCccCCCCCCCCCCCCCccccchhhhcccCHHHHHHHH
Q 006901 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKSVGSKKRGRECDETDSNGSQKVKSIESFGQMGVKQLREQA 82 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (626)
++|+|.+||++|+.|||++.|.|++||+||++.++... ..++++ -...++...|..|||.+|++++
T Consensus 62 ~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~Kv-----------e~s~ee---i~~~~~~g~l~klTV~~Lk~~l 127 (151)
T 1jjr_A 62 GKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDKV-----------EYSEEE---LKTHISKGTLGKFTVPMLKEAC 127 (151)
T ss_dssp TSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC--------------------------------------------
T ss_pred HhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhhc-----------cccHHH---HHHHHhcCccccccHHHHHHHH
Confidence 58999999999999999999999999999999985432 111121 1334577889999999999999
Q ss_pred HhhCCCCCCchHHHHHHHhhccc
Q 006901 83 DLRGLSKAGTKKELLERLCNHAE 105 (626)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ 105 (626)
..++++..|+|.++++||++..+
T Consensus 128 ~~~gl~~~GkKaeLieRi~~~~~ 150 (151)
T 1jjr_A 128 RAYGLKSGLKKQELLEALTKHFQ 150 (151)
T ss_dssp -----------------------
T ss_pred HHcCCCCCCcHHHHHHHHHHHhc
Confidence 99999999999999999987543
No 14
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.08 E-value=5.2e-11 Score=91.71 Aligned_cols=39 Identities=44% Similarity=0.650 Sum_probs=35.8
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhc
Q 006901 2 ASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEEN 40 (626)
Q Consensus 2 ~~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~ 40 (626)
.++|||.|||+||++|||+++|.|++||+||+++++.++
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~e~ 48 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALSGPS 48 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCCCC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhccc
Confidence 368999999999999999999999999999999986543
No 15
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=99.01 E-value=2.5e-10 Score=88.36 Aligned_cols=39 Identities=46% Similarity=0.508 Sum_probs=36.3
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcc
Q 006901 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENK 41 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~ 41 (626)
++|||.|||+||++|||+++|.|++||+||+++.++++.
T Consensus 6 ~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~~~ 44 (51)
T 1h1j_S 6 SSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESKG 44 (51)
T ss_dssp GGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHSCC
T ss_pred HHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhccC
Confidence 689999999999999999999999999999999877654
No 16
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=98.97 E-value=6.6e-10 Score=87.21 Aligned_cols=40 Identities=35% Similarity=0.536 Sum_probs=37.4
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcc
Q 006901 2 ASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENK 41 (626)
Q Consensus 2 ~~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~ 41 (626)
.++|||.|||++|++|||+++|.|++||+||++++..+++
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~~~ 49 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAE 49 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHTCC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCcc
Confidence 4799999999999999999999999999999999988754
No 17
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=98.94 E-value=7.9e-10 Score=91.53 Aligned_cols=39 Identities=31% Similarity=0.515 Sum_probs=36.4
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcc
Q 006901 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENK 41 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~ 41 (626)
++|||.|||+||++|||+++|.|++||+||+++++.++.
T Consensus 27 ~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~~~ 65 (75)
T 2kvu_A 27 DDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQISP 65 (75)
T ss_dssp TTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTTSC
T ss_pred HHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHccCC
Confidence 589999999999999999999999999999999987654
No 18
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=6.1e-06 Score=73.67 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=35.5
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhc
Q 006901 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEEN 40 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~ 40 (626)
+||||.||++.|+.+||+++|.|++|++||++.++...
T Consensus 38 ~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 38 ELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp TTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999999997654
No 19
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.84 E-value=1.5e-05 Score=84.81 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=53.5
Q ss_pred CCCCccEEEEEEeeeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHHhhcccccCC
Q 006901 169 GDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRR 236 (626)
Q Consensus 169 ~~n~NkfY~iQll~~~~~~~y~v~~rWGRVG~~Gq~k~~~pf~s~e~Ai~~F~kkF~eKTgn~W~~R~ 236 (626)
..|.+|||.|.+- .+.|-++|||||+.||.+.+. |.+.++|.++|+++-.+|++.++....
T Consensus 9 ~~~~~kf~~~~~~------~~~~~~~~GriG~~g~~~~~~-f~~~~~a~~~~~~l~~~k~~kGy~~~~ 69 (362)
T 2ra8_A 9 DFKSQKFWSIDVR------GTDVIVNYGKLGTDGQTQVKN-FSSAGEAEKAAGKLIAEKTKKGYVETL 69 (362)
T ss_dssp SSSCEEEEEEEEE------TTEEEEEEEETTSCCEEEEEE-CSSHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred cCCcCceEEEEEe------ccEEEEEECCCCCCceEEeee-CCCHHHHHHHHHHHHHHHHhcCCcccc
Confidence 4689999999986 237889999999999999775 999999999999999999999886653
No 20
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.45 E-value=0.0034 Score=48.20 Aligned_cols=41 Identities=37% Similarity=0.428 Sum_probs=36.1
Q ss_pred chhhhcccCHHHHHHHHHhhCCCCCCchHHHHHHHhhcccC
Q 006901 66 SIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQ 106 (626)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (626)
...++..|+|.+|++.+..|+++..|+|.++++||.+..+.
T Consensus 6 s~~~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~ 46 (50)
T 1zrj_A 6 SGMDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALSG 46 (50)
T ss_dssp CCCCGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCC
T ss_pred CcCCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999765433
No 21
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=96.44 E-value=0.0021 Score=49.53 Aligned_cols=38 Identities=34% Similarity=0.522 Sum_probs=34.4
Q ss_pred hhhcccCHHHHHHHHHhhCCCCCCchHHHHHHHhhccc
Q 006901 68 ESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAE 105 (626)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (626)
.++..|+|.+|++.+..||++..|+|.++++||.+..+
T Consensus 3 ~~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 3 ADYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp CSGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred chHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999975443
No 22
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=95.85 E-value=0.0072 Score=47.30 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=33.5
Q ss_pred hhhhcccCHHHHHHHHHhhCCCCCCchHHHHHHHhh
Q 006901 67 IESFGQMGVKQLREQADLRGLSKAGTKKELLERLCN 102 (626)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (626)
..++..|+|.+|++.+..++++..|+|.++++||.+
T Consensus 7 ~~~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~ 42 (55)
T 2do1_A 7 GVELHKLKLAELKQECLARGLETKGIKQDLIHRLQA 42 (55)
T ss_dssp CCCTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHH
T ss_pred ccCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 457899999999999999999999999999999964
No 23
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=95.71 E-value=0.0082 Score=49.74 Aligned_cols=39 Identities=36% Similarity=0.509 Sum_probs=35.2
Q ss_pred cchhhhcccCHHHHHHHHHhhCCCCCCchHHHHHHHhhc
Q 006901 65 KSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNH 103 (626)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (626)
....++..|+|.+|++.+..||++..|+|.++++||.+.
T Consensus 21 ~l~~~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~ 59 (75)
T 2kvu_A 21 ALPANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAY 59 (75)
T ss_dssp SCCTTTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH
T ss_pred cchHHHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 345689999999999999999999999999999999654
No 24
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=91.38 E-value=0.16 Score=45.36 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=34.2
Q ss_pred chhhhcccCHHHHHHHHHhhCCCCCCchHHHHHHHhhc
Q 006901 66 SIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNH 103 (626)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (626)
.+..+..|+|.+|++.|..++++..|+|.++++||.+.
T Consensus 33 ~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~y 70 (114)
T 2rnn_A 33 TITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNF 70 (114)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHH
Confidence 35568899999999999999999999999999999653
No 25
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=90.36 E-value=0.2 Score=46.83 Aligned_cols=42 Identities=33% Similarity=0.440 Sum_probs=37.0
Q ss_pred cchhhhcccCHHHHHHHHHhhCCCCCCchHHHHHHHhhcccC
Q 006901 65 KSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQ 106 (626)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (626)
++-..|..|+|.+|++.+..+++++.|+|.++++||.+..+.
T Consensus 56 ~~~g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~ 97 (151)
T 1jjr_A 56 ISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD 97 (151)
T ss_dssp HHHTCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC
T ss_pred HHcCcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhh
Confidence 445778899999999999999999999999999999876544
No 26
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=88.12 E-value=0.49 Score=48.58 Aligned_cols=36 Identities=33% Similarity=0.527 Sum_probs=33.7
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Q 006901 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEE 39 (626)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~ 39 (626)
.|++.|||+.|+..||+|.|.|.+|-+||+....+.
T Consensus 28 ~m~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~~~~ 63 (299)
T 1zbh_A 28 RMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQ 63 (299)
T ss_dssp SCCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999998664
No 27
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=84.20 E-value=1.5 Score=38.01 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=34.6
Q ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcccc
Q 006901 5 LKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKS 43 (626)
Q Consensus 5 ~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~~ 43 (626)
.++-||++-|.+.||+-.|-|.+||+|+-+-|..+....
T Consensus 20 frikelkdvl~~lgl~kqgkKqdL~Dril~llsd~q~~~ 58 (110)
T 2rno_A 20 FRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQR 58 (110)
T ss_dssp SCHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHSSCCTT
T ss_pred hhHHHHHHHHHHhCCcccCccHHHHHHHHHHcCHHHhcc
Confidence 578999999999999999999999999999887666533
No 28
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.04 E-value=7.6 Score=29.55 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Q 006901 5 LKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEE 39 (626)
Q Consensus 5 ~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~ 39 (626)
+.-.||.+.|..-|-+.-|...+||+||+......
T Consensus 11 W~~~ELQaKLaE~GAPi~g~REElvdRLk~Y~~Qt 45 (58)
T 2do5_A 11 WAAQELQAKLAEIGAPIQGNREELVERLQSYTRQT 45 (58)
T ss_dssp SCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhCCcccccHHHHHHHHHHHhhcc
Confidence 45689999999999999999999999999886543
No 29
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=65.77 E-value=1.4 Score=49.84 Aligned_cols=41 Identities=34% Similarity=0.413 Sum_probs=0.0
Q ss_pred ccchhhhcccCHHHHHHHHHhhCCCCCCchHHHHHHHhhcc
Q 006901 64 VKSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHA 104 (626)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (626)
..+...+..|||.+|++.+..+++++.|+|.++++|+.+..
T Consensus 567 ~~~~g~l~~~tv~~Lk~~l~~~~~~~~~kK~~li~~i~~~~ 607 (609)
T 1jey_A 567 HISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHF 607 (609)
T ss_dssp -----------------------------------------
T ss_pred HHHCCCchhccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHh
Confidence 34557788899999999999999999999999999997543
No 30
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=65.56 E-value=5.9 Score=31.73 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=31.3
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 006901 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVE 37 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~ 37 (626)
.-++|.||.--|..-|-+-+|-|.+|+.|--.-+.
T Consensus 12 ~sfRVsELq~LLg~~gr~KsGrK~eL~~RaL~LL~ 46 (65)
T 1v66_A 12 MSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLK 46 (65)
T ss_dssp TTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHH
Confidence 35799999999999999999999999999776664
No 31
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=64.46 E-value=2.6 Score=40.68 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=26.8
Q ss_pred eeEEecCCCCCHHHHHhcCCCCCCCCCCCCcceeeeeeecccccc
Q 006901 472 MLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFS 516 (626)
Q Consensus 472 ~LLwHGTr~~N~~gIL~~GLriap~ea~~tG~mfGkGIYFAd~~s 516 (626)
..|||||...+|.+|+.+||+-+ =..-|.||....
T Consensus 92 ~~lyHGT~~~~~~~I~~~GL~~m----------~R~hVHLs~~~~ 126 (186)
T 1wfx_A 92 PILYHGTTEEALPLIMERGIMRG----------RRLKVHLTSSLE 126 (186)
T ss_dssp SEEEECCBGGGHHHHHHHCBCCC----------SSSSEEEESCHH
T ss_pred CEEEEeCCHHHHHHHHHhCCCCC----------CCCEEEEecCCC
Confidence 58999999999999999998632 233577776443
No 32
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=55.96 E-value=2.4 Score=44.62 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Q 006901 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEE 39 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~ 39 (626)
..|++.|||+.|...+|++.|.+.+|-.||+......
T Consensus 77 ~~~~~~~l~~~l~~~~l~~~G~~~vl~~~l~~~y~~~ 113 (349)
T 1zbu_A 77 NRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQ 113 (349)
T ss_dssp -------------------------------------
T ss_pred ccCCHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhc
Confidence 3688999999999999999999999999999877543
No 33
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=55.56 E-value=12 Score=37.55 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=34.8
Q ss_pred CCCcHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHHhcccc
Q 006901 3 SNLKVDQLRAKLAQRGLSTAGT-KAILVQRLEEAVEEENKKS 43 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~-k~~l~~rl~~~~~~~~~~~ 43 (626)
..|.+.|||..+..||+.+.|+ ..+|.+.|+.-|+-.-...
T Consensus 145 ~sLs~~ELr~AC~~RGm~~~gls~e~LR~~L~~WL~Lsl~~~ 186 (249)
T 3skq_A 145 ESLSQEELYQACVSRGMKAYGVSKEDLVDNLKVWLELRLRQK 186 (249)
T ss_dssp GGSCHHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHccCC
Confidence 3588999999999999999999 7789999999887665544
No 34
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=55.09 E-value=9 Score=38.69 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 006901 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEA 35 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~ 35 (626)
++||+..|+.-...-|+.+.|.|++|++||.+.
T Consensus 2 ~~lk~~~L~~l~~~~G~~~sg~K~~l~~rl~~~ 34 (258)
T 1kcf_A 2 ATVKLSFLQHICKLTGLSRSGRKDELLRRIVDS 34 (258)
T ss_dssp -CCCHHHHHHHHHHTTCCCCSCTTHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Confidence 469999999999999999999999999999875
No 35
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=47.84 E-value=44 Score=33.52 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=60.9
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhccccCCCccCCCCCCCCCCCCCccccchhhhcccCHHHHHHHHH
Q 006901 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKSVGSKKRGRECDETDSNGSQKVKSIESFGQMGVKQLREQAD 83 (626)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (626)
.|....|++-++--||.+-|...-|.-||...+..=.. +++.|.-+-+..|++.+||.+|.
T Consensus 97 nLsr~qLvaLck~m~L~p~gt~~~LR~rLr~rl~~I~~-------------------DDr~I~~EGV~sLs~~ELr~AC~ 157 (249)
T 3skq_A 97 NLSRPQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMN-------------------DDKTIDYEGVESLSQEELYQACV 157 (249)
T ss_dssp HSCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHH-------------------HHHHHHHHCGGGSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHH-------------------hhHHHHHhCcccCCHHHHHHHHH
Confidence 35667899999999999999999999999887754222 23445666678899999999999
Q ss_pred hhCCCCCCchHH-HHHHH
Q 006901 84 LRGLSKAGTKKE-LLERL 100 (626)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~ 100 (626)
.||+-+.|...+ ..+.|
T Consensus 158 ~RGm~~~gls~e~LR~~L 175 (249)
T 3skq_A 158 SRGMKAYGVSKEDLVDNL 175 (249)
T ss_dssp HTTCCCTTCCHHHHHHHH
T ss_pred HcCCCCCCCCHHHHHHHH
Confidence 999999986554 34444
No 36
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=41.98 E-value=26 Score=28.05 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=26.7
Q ss_pred ccCHHHHHHHHHhhCCCCCCchHHHHHHH
Q 006901 72 QMGVKQLREQADLRGLSKAGTKKELLERL 100 (626)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (626)
..-|.+||-+++..|.+..|+|.|+..|.
T Consensus 13 sfRVsELq~LLg~~gr~KsGrK~eL~~Ra 41 (65)
T 1v66_A 13 SLRVSELQVLLGYAGRNKHGRKHELLTKA 41 (65)
T ss_dssp TCCHHHHHHHHHTTCCCCCSCHHHHHHHH
T ss_pred HHhHHHHHHHHHHcCCCCcCcHHHHHHHH
Confidence 34689999999999999999999999998
No 37
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=39.07 E-value=25 Score=31.38 Aligned_cols=28 Identities=36% Similarity=0.355 Sum_probs=26.1
Q ss_pred CCcHHHHHHHHHHcCCCCCCC--HHHHHHH
Q 006901 4 NLKVDQLRAKLAQRGLSTAGT--KAILVQR 31 (626)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~--k~~l~~r 31 (626)
+|+|.+|+.-|..+++.+.|. |.+||+=
T Consensus 78 ~lkvkdL~~yL~~~~I~~~~c~EKedLv~l 107 (120)
T 1y02_A 78 KMKVKDLRDYLSLHDISTEMCREKEELVLL 107 (120)
T ss_dssp TSCHHHHHHHHHHTTCCCTTCCSHHHHHHH
T ss_pred cccHHHHHHHHHhCCCCcccceeHHHHHHH
Confidence 689999999999999999999 9999983
No 38
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=30.10 E-value=22 Score=32.24 Aligned_cols=19 Identities=37% Similarity=0.747 Sum_probs=16.7
Q ss_pred CCCcHHHHHHHHHHcCCCC
Q 006901 3 SNLKVDQLRAKLAQRGLST 21 (626)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~ 21 (626)
.+|+|.|||+.|.+||+.-
T Consensus 90 ~~lTV~ELKa~Lde~gIe~ 108 (131)
T 2out_A 90 NTFTVEQLKAQLTERGITF 108 (131)
T ss_dssp TTCCSHHHHHHHHHHTCCC
T ss_pred ccccHHHHHHHHHHcCCcc
Confidence 4689999999999999864
No 39
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=29.27 E-value=69 Score=32.21 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHHc---CH-HHHHHHHHHhccCC--CCCCCCCCcHHHHHHHHHHHHHHHHhc
Q 006901 279 LEPCVAKFISLIC---NI-SMMKQLMMEIGYNA--NKLPLGKLSKSTILKGYDVLKRIADVI 334 (626)
Q Consensus 279 L~~~Vq~li~lI~---d~-~~m~~~m~e~~~D~--~kmPLGkLSk~qI~~g~~vL~eI~~~l 334 (626)
|...+..++..+| ++ ..+|.+|..+|++. -+.||..|+.++..+-.++|.++.+-|
T Consensus 223 l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~~ 284 (286)
T 2r91_A 223 LQFLLDEIVESARHIGYAAAVYELVEIFQGYEAGEPRGPVYPLDPEEKAWLRAAVAKAKSQL 284 (286)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCSCCCBCCTTSCCCCHHHHHHHHHHTHHHHHTC
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4455666666654 36 77899999999865 488999999998887777777776543
No 40
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=25.61 E-value=94 Score=31.35 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=40.9
Q ss_pred CCcHHHHHHHHHHc---C-HHHHHHHHHHhccCC--CCCCCCCCcHHHHHHHHHHHHHHH
Q 006901 278 KLEPCVAKFISLIC---N-ISMMKQLMMEIGYNA--NKLPLGKLSKSTILKGYDVLKRIA 331 (626)
Q Consensus 278 kL~~~Vq~li~lI~---d-~~~m~~~m~e~~~D~--~kmPLGkLSk~qI~~g~~vL~eI~ 331 (626)
.|...+..++..+| + +..+|.+|..+|++. -+.||..|+.++..+-.++|.++.
T Consensus 223 ~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 282 (293)
T 1w3i_A 223 KLQFLHDEVIEASRIFGSLSSNYVLTKYFQGYDLGYPRPPIFPLDDEEERQLIKKVEGIR 282 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCCBCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35566777777775 4 567899999899865 478999999988777767776654
No 41
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=25.17 E-value=59 Score=29.24 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=30.2
Q ss_pred chhhhcccCHHHHHHHHHhhCCCCCC--chHHHHHHHh
Q 006901 66 SIESFGQMGVKQLREQADLRGLSKAG--TKKELLERLC 101 (626)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 101 (626)
.+++|+.|++.+|+++|...++.... +|.+++.++-
T Consensus 2 ~~~eLk~~~~~eL~eiAk~LgI~~~s~mrKqeLI~~IL 39 (130)
T 1a62_A 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAIL 39 (130)
T ss_dssp BHHHHHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHH
T ss_pred ChHHHhhCCHHHHHHHHHHcCCCCccccCHHHHHHHHH
Confidence 46889999999999999999998775 7788666663
No 42
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=25.12 E-value=83 Score=31.94 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCCC---CCCCCCCcHHHHHHHHHHHHHHH
Q 006901 279 LEPCVAKFISLIC---NISMMKQLMMEIGYNAN---KLPLGKLSKSTILKGYDVLKRIA 331 (626)
Q Consensus 279 L~~~Vq~li~lI~---d~~~m~~~m~e~~~D~~---kmPLGkLSk~qI~~g~~vL~eI~ 331 (626)
|...+..|++.+| ++..+|.+|..+|++.. +.||..||.++..+-.++|.++.
T Consensus 242 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~~R~Pl~~l~~~~~~~l~~~l~~~~ 300 (303)
T 2wkj_A 242 LQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLM 300 (303)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCSSCCCCTTSCCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4556666776665 36778999998998654 88999999988877767776653
No 43
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=24.91 E-value=79 Score=29.60 Aligned_cols=38 Identities=8% Similarity=0.103 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhccc
Q 006901 5 LKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKK 42 (626)
Q Consensus 5 ~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~ 42 (626)
|++.+||+-|+.-|.+..|-+..|++|+...+-=.+-.
T Consensus 42 ls~~eLk~lL~~N~q~~~g~~~~ll~r~ADgm~FGal~ 79 (160)
T 2riq_A 42 CSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALL 79 (160)
T ss_dssp CCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHCEEC
T ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 78999999999999999999999999998887555443
No 44
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=24.69 E-value=1e+02 Score=30.97 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHHc---C-HHHHHHHHHHhccCC--CCCCCCCCcHHHHHHHHHHHHHHH
Q 006901 278 KLEPCVAKFISLIC---N-ISMMKQLMMEIGYNA--NKLPLGKLSKSTILKGYDVLKRIA 331 (626)
Q Consensus 278 kL~~~Vq~li~lI~---d-~~~m~~~m~e~~~D~--~kmPLGkLSk~qI~~g~~vL~eI~ 331 (626)
+|...+..++..+| + +..+|.+|..+|++. -+.||..|+.++..+-.++|.++.
T Consensus 221 ~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 280 (288)
T 2nuw_A 221 RLQELINRLADILRKYGSISAIYVLVNEFQGYDVGYPRPPIFPLTDEEALSLKREIEPLK 280 (288)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCCCBCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35566777777775 3 567899999899865 488999999988776666666654
No 45
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=22.44 E-value=1.5e+02 Score=29.88 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=42.5
Q ss_pred CCCcHHHHHHHHHHc---CHHHHHHHHHH-hc-cCC--CCCCCCCCcHHHHHHHHHHHHHHH
Q 006901 277 TKLEPCVAKFISLIC---NISMMKQLMME-IG-YNA--NKLPLGKLSKSTILKGYDVLKRIA 331 (626)
Q Consensus 277 skL~~~Vq~li~lI~---d~~~m~~~m~e-~~-~D~--~kmPLGkLSk~qI~~g~~vL~eI~ 331 (626)
-.|...+..|++.+| ++..+|.+|.. +| ++. -+.||..|+.++..+-.++|.++.
T Consensus 228 ~~l~~~l~~l~~~~~~~~~~~~~K~al~~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 289 (294)
T 3b4u_A 228 GKDDPRIVDLVVELLKFPVTPAVKVLVSHTTGETIWSDVRAPLVAISPEDRRQIEGAFDALF 289 (294)
T ss_dssp CCCCHHHHHHHHHHTTSCHHHHHHHHHHHHHCCGGGGCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHhCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 457778888888776 36778999998 89 754 489999999998877667766654
No 46
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=22.34 E-value=75 Score=32.33 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCCcHHHHHHHHHHHHHH
Q 006901 279 LEPCVAKFISLIC---NISMMKQLMMEIGYNAN--KLPLGKLSKSTILKGYDVLKRI 330 (626)
Q Consensus 279 L~~~Vq~li~lI~---d~~~m~~~m~e~~~D~~--kmPLGkLSk~qI~~g~~vL~eI 330 (626)
|...+..|++.++ ++..+|.+|..+|++.. +.||..|+.++..+-.++|.++
T Consensus 244 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 300 (304)
T 3l21_A 244 INIAVAPLCNAMSRLGGVTLSKAGLRLQGIDVGDPRLPQVAATPEQIDALAADMRAA 300 (304)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHhcCCCCCCcCCCCCCCCHHHHHHHHHHHHHc
Confidence 4445555666655 56778999999999754 8899999999887777777653
No 47
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=22.30 E-value=1e+02 Score=30.90 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCC--CCCCCCCCcHHHHHHHHHHHHHH
Q 006901 279 LEPCVAKFISLIC---NISMMKQLMMEIGYNA--NKLPLGKLSKSTILKGYDVLKRI 330 (626)
Q Consensus 279 L~~~Vq~li~lI~---d~~~m~~~m~e~~~D~--~kmPLGkLSk~qI~~g~~vL~eI 330 (626)
|...+..|++.+| ++..+|.+|..+|++. -+.||..|+.++..+-.++|.++
T Consensus 230 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 286 (289)
T 2yxg_A 230 IHYKLFPLMKAMFIETNPIPVKTALNMMGRPAGELRLPLCEMSEEHKKILENVLKDL 286 (289)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHTTCSCCCCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5556777777776 5677899999899864 48899999998877666666654
No 48
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=22.14 E-value=1.1e+02 Score=30.99 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCC--CCCCCCCCcHHHHHHHHHHHHHH
Q 006901 279 LEPCVAKFISLIC---NISMMKQLMMEIGYNA--NKLPLGKLSKSTILKGYDVLKRI 330 (626)
Q Consensus 279 L~~~Vq~li~lI~---d~~~m~~~m~e~~~D~--~kmPLGkLSk~qI~~g~~vL~eI 330 (626)
|...+..|++.+| ++..+|.+|..+|++. -+.||..||.++..+-.++|.++
T Consensus 231 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 287 (297)
T 2rfg_A 231 IHDLLAPLHEALFREPSPAGAKYAASLLGLCNEECRLPIVPLSEQTKSDIKNIINEL 287 (297)
T ss_dssp HHHHHHHHHHHHHSSSTTHHHHHHHHHTTSSCCCCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Confidence 4556677777765 5677899999899864 48899999998877666666553
No 49
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=21.10 E-value=94 Score=31.67 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=40.9
Q ss_pred CCcHHHHHHHHHHcC----HHHHHHHHHHhcc-CC--CCCCCCCCcHHHHHHHHHHHHHHH
Q 006901 278 KLEPCVAKFISLICN----ISMMKQLMMEIGY-NA--NKLPLGKLSKSTILKGYDVLKRIA 331 (626)
Q Consensus 278 kL~~~Vq~li~lI~d----~~~m~~~m~e~~~-D~--~kmPLGkLSk~qI~~g~~vL~eI~ 331 (626)
.|...+..|++.++. +..+|.+|..+|+ +. -+.||..||.++..+-.++|.++.
T Consensus 243 ~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 303 (313)
T 3dz1_A 243 NLFDAHLPLIRYEHQQGVGLSVRKYVLKKRGLLSSSAQRKPGASLTDTAREEVDYLLSRLA 303 (313)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHTTSCSCCCCCSSCCCCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 355567777887764 5678999999998 43 488999999998877777776654
No 50
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=20.61 E-value=99 Score=31.31 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=40.1
Q ss_pred CcHHHHHHHHHHcC---HHHHHHHHHHhccCCC--CCCCCCCcHHHHHHHHHHHHHHH
Q 006901 279 LEPCVAKFISLICN---ISMMKQLMMEIGYNAN--KLPLGKLSKSTILKGYDVLKRIA 331 (626)
Q Consensus 279 L~~~Vq~li~lI~d---~~~m~~~m~e~~~D~~--kmPLGkLSk~qI~~g~~vL~eI~ 331 (626)
|...+..|++.++. +..+|.+|..+|++.. +.||..||.++..+-.++|.++.
T Consensus 235 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 292 (300)
T 3eb2_A 235 LQRKLWRVNEAFAKFNLAACIKAGLALQGYDVGDPIPPQAALTAEERKAVEKVLAEIA 292 (300)
T ss_dssp HHHHHTHHHHHHTTSCHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHh
Confidence 45566677777764 5678999999999754 88999999998877767766654
No 51
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=20.40 E-value=48 Score=29.96 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Q 006901 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEE 39 (626)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~ 39 (626)
|+.+.+|++-+.=-||+..|.|.+|++||-+-|.+.
T Consensus 74 K~~~~~L~~~c~iL~l~~~g~keelv~ril~FL~~P 109 (131)
T 2jx3_A 74 KFRNAMLKSICEVLDLERSGVNSELVKRILNFLMHP 109 (131)
T ss_dssp HHHHHHHHHHHHTTTCCSCSCHHHHHHHHHHTTTSC
T ss_pred ccCHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhCc
Confidence 677889999999999999999999999999988544
Done!