Query 006902
Match_columns 626
No_of_seqs 407 out of 3388
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 16:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-56 4.6E-61 493.7 33.4 590 1-620 1-885 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.4E-35 9.5E-40 342.1 29.7 141 158-307 184-341 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 2E-22 4.3E-27 202.0 13.3 143 163-307 1-146 (287)
4 PLN03210 Resistant to P. syrin 99.7 3.9E-16 8.4E-21 183.4 12.0 241 311-585 634-911 (1153)
5 PLN00113 leucine-rich repeat r 99.6 3.5E-16 7.5E-21 183.4 10.1 246 312-585 141-398 (968)
6 PLN00113 leucine-rich repeat r 99.6 1E-15 2.2E-20 179.4 10.9 259 312-599 165-435 (968)
7 KOG0444 Cytoskeletal regulator 99.6 9.8E-17 2.1E-21 162.6 -3.9 242 312-588 127-382 (1255)
8 KOG0444 Cytoskeletal regulator 99.5 1.4E-15 3E-20 154.4 -5.1 249 312-598 104-368 (1255)
9 KOG4194 Membrane glycoprotein 99.4 3.1E-14 6.7E-19 143.9 0.1 232 312-576 174-425 (873)
10 KOG4194 Membrane glycoprotein 99.2 1.9E-12 4E-17 131.2 0.7 245 311-585 197-462 (873)
11 KOG4658 Apoptotic ATPase [Sign 99.2 1E-11 2.3E-16 139.1 6.0 252 312-587 596-867 (889)
12 KOG0472 Leucine-rich repeat pr 99.1 8.5E-13 1.9E-17 128.0 -8.0 59 312-372 69-127 (565)
13 KOG0472 Leucine-rich repeat pr 99.1 1.3E-11 2.9E-16 119.8 -0.9 253 311-585 252-544 (565)
14 PRK15370 E3 ubiquitin-protein 99.0 2.6E-10 5.6E-15 126.0 6.1 208 312-587 200-407 (754)
15 PRK15370 E3 ubiquitin-protein 99.0 2.9E-10 6.3E-15 125.6 6.1 230 297-594 164-393 (754)
16 KOG0618 Serine/threonine phosp 99.0 8.9E-12 1.9E-16 133.0 -5.7 234 311-579 241-488 (1081)
17 KOG0617 Ras suppressor protein 99.0 1E-11 2.2E-16 106.8 -5.3 156 312-501 34-189 (264)
18 PRK15387 E3 ubiquitin-protein 98.9 2.5E-09 5.4E-14 117.7 10.1 35 543-578 422-456 (788)
19 KOG0618 Serine/threonine phosp 98.9 3.3E-10 7.2E-15 121.3 2.4 64 312-377 69-132 (1081)
20 cd00116 LRR_RI Leucine-rich re 98.8 2.3E-09 5.1E-14 109.2 3.0 57 313-371 25-93 (319)
21 cd00116 LRR_RI Leucine-rich re 98.7 1E-08 2.2E-13 104.5 3.9 237 315-578 2-261 (319)
22 PRK00411 cdc6 cell division co 98.7 2.7E-07 5.9E-12 96.9 14.5 116 157-273 29-150 (394)
23 KOG2120 SCF ubiquitin ligase, 98.7 1.2E-09 2.7E-14 102.4 -3.4 184 312-554 186-374 (419)
24 KOG4341 F-box protein containi 98.7 1.9E-09 4E-14 105.9 -2.4 138 448-603 292-440 (483)
25 KOG0617 Ras suppressor protein 98.6 1.4E-09 3E-14 93.8 -4.1 128 312-461 57-184 (264)
26 TIGR02928 orc1/cdc6 family rep 98.6 6.5E-07 1.4E-11 93.0 14.7 115 158-273 15-141 (365)
27 KOG4237 Extracellular matrix p 98.6 4.3E-09 9.3E-14 102.6 -2.4 79 293-372 49-129 (498)
28 PRK15387 E3 ubiquitin-protein 98.6 5.5E-08 1.2E-12 107.3 5.7 18 538-555 440-457 (788)
29 KOG4237 Extracellular matrix p 98.5 1.1E-08 2.3E-13 99.9 -1.6 62 311-372 91-153 (498)
30 KOG3207 Beta-tubulin folding c 98.5 2.5E-08 5.3E-13 98.7 0.6 217 325-574 112-333 (505)
31 KOG2120 SCF ubiquitin ligase, 98.5 1.6E-08 3.4E-13 95.1 -1.2 61 311-371 210-272 (419)
32 cd00009 AAA The AAA+ (ATPases 98.5 1.4E-06 3E-11 77.3 11.4 122 161-300 1-130 (151)
33 PF05729 NACHT: NACHT domain 98.4 6.3E-07 1.4E-11 81.5 8.4 116 180-303 1-133 (166)
34 cd01128 rho_factor Transcripti 98.4 4.2E-07 9.2E-12 87.3 6.8 92 178-272 15-114 (249)
35 PF13401 AAA_22: AAA domain; P 98.3 1.4E-06 3E-11 75.8 7.7 116 178-298 3-124 (131)
36 KOG1259 Nischarin, modulator o 98.3 1.2E-07 2.5E-12 89.3 0.6 211 312-554 183-410 (490)
37 PF13855 LRR_8: Leucine rich r 98.3 2.9E-07 6.4E-12 67.9 2.6 58 312-370 2-60 (61)
38 TIGR03015 pepcterm_ATPase puta 98.3 1.8E-05 4E-10 78.3 16.0 90 177-273 41-135 (269)
39 PF13191 AAA_16: AAA ATPase do 98.3 2.6E-06 5.5E-11 79.1 9.1 44 160-203 2-48 (185)
40 PRK09376 rho transcription ter 98.3 1.5E-06 3.3E-11 87.1 7.4 92 178-273 168-268 (416)
41 KOG3207 Beta-tubulin folding c 98.3 2.5E-07 5.5E-12 91.7 1.2 184 312-517 147-336 (505)
42 KOG4341 F-box protein containi 98.3 8.9E-08 1.9E-12 94.3 -2.0 150 421-586 291-445 (483)
43 PF13173 AAA_14: AAA domain 98.2 2.6E-06 5.7E-11 73.6 6.1 102 179-304 2-103 (128)
44 PTZ00202 tuzin; Provisional 98.2 1.8E-05 3.9E-10 79.9 11.8 74 157-239 261-337 (550)
45 PF14580 LRR_9: Leucine-rich r 98.2 3.2E-07 7E-12 82.8 -0.6 55 313-371 21-76 (175)
46 PF14580 LRR_9: Leucine-rich r 98.1 1.2E-06 2.6E-11 79.1 2.9 139 321-518 7-151 (175)
47 COG4886 Leucine-rich repeat (L 98.1 1.5E-06 3.2E-11 91.3 3.8 174 312-521 117-291 (394)
48 COG1474 CDC6 Cdc6-related prot 98.1 5.1E-05 1.1E-09 77.4 13.9 113 158-273 17-135 (366)
49 PF01637 Arch_ATPase: Archaeal 98.1 6.6E-06 1.4E-10 79.5 6.5 44 160-203 1-44 (234)
50 TIGR00767 rho transcription te 98.0 1.1E-05 2.4E-10 81.4 7.7 94 178-273 167-267 (415)
51 PTZ00112 origin recognition co 98.0 8.9E-05 1.9E-09 81.0 13.5 116 157-273 754-881 (1164)
52 KOG1259 Nischarin, modulator o 98.0 2.3E-06 5E-11 80.8 1.0 126 312-461 285-410 (490)
53 TIGR02903 spore_lon_C ATP-depe 97.9 0.00096 2.1E-08 73.3 20.7 139 158-299 154-333 (615)
54 PRK11331 5-methylcytosine-spec 97.9 9.2E-05 2E-09 76.2 11.8 108 158-273 175-284 (459)
55 PF12799 LRR_4: Leucine Rich r 97.9 5.5E-06 1.2E-10 56.0 1.9 40 312-352 2-41 (44)
56 KOG1909 Ran GTPase-activating 97.9 2.7E-06 5.9E-11 82.3 -0.1 244 311-578 30-309 (382)
57 COG4886 Leucine-rich repeat (L 97.8 2.2E-05 4.9E-10 82.4 5.8 194 316-560 98-294 (394)
58 KOG0532 Leucine-rich repeat (L 97.8 2.3E-06 5E-11 87.7 -2.1 188 315-577 79-270 (722)
59 PRK15386 type III secretion pr 97.8 4.2E-05 9.1E-10 77.7 6.8 133 423-596 51-184 (426)
60 PRK04841 transcriptional regul 97.8 0.00019 4.1E-09 84.2 12.5 131 158-300 14-162 (903)
61 KOG2543 Origin recognition com 97.7 0.00025 5.3E-09 69.9 11.0 116 157-278 5-132 (438)
62 TIGR00635 ruvB Holliday juncti 97.7 7.9E-05 1.7E-09 75.2 7.9 46 158-203 4-54 (305)
63 TIGR03420 DnaA_homol_Hda DnaA 97.7 5.8E-05 1.3E-09 72.5 6.6 55 163-220 22-76 (226)
64 KOG2982 Uncharacterized conser 97.7 1.2E-05 2.6E-10 76.1 1.2 68 482-561 197-267 (418)
65 PF13855 LRR_8: Leucine rich r 97.7 5.5E-05 1.2E-09 55.7 4.3 30 485-515 2-33 (61)
66 KOG0532 Leucine-rich repeat (L 97.7 6.6E-06 1.4E-10 84.5 -0.9 59 312-373 99-157 (722)
67 PRK05564 DNA polymerase III su 97.7 0.00031 6.6E-09 71.0 10.7 123 158-300 4-133 (313)
68 COG2256 MGS1 ATPase related to 97.6 0.0003 6.5E-09 70.0 9.7 112 159-300 25-143 (436)
69 PRK06893 DNA replication initi 97.6 0.00016 3.4E-09 69.4 7.7 39 178-219 38-76 (229)
70 PRK12402 replication factor C 97.6 0.00021 4.7E-09 73.2 9.2 46 158-203 15-60 (337)
71 PRK13342 recombination factor 97.6 0.00018 3.9E-09 75.6 8.3 46 158-203 12-60 (413)
72 PRK07003 DNA polymerase III su 97.5 0.00056 1.2E-08 74.5 10.9 46 158-203 16-62 (830)
73 PRK08727 hypothetical protein; 97.5 0.00041 8.9E-09 66.7 8.9 57 159-218 21-77 (233)
74 KOG2028 ATPase related to the 97.5 0.00043 9.3E-09 67.6 8.1 118 159-301 139-262 (554)
75 PRK13341 recombination factor 97.4 0.00036 7.7E-09 77.5 8.3 46 158-203 28-76 (725)
76 PRK08118 topology modulation p 97.4 9.8E-05 2.1E-09 66.9 3.2 35 180-215 2-37 (167)
77 PRK00440 rfc replication facto 97.4 0.0011 2.3E-08 67.5 11.1 46 158-203 17-62 (319)
78 PRK00080 ruvB Holliday junctio 97.4 0.00047 1E-08 70.2 8.3 46 158-203 25-75 (328)
79 PF05496 RuvB_N: Holliday junc 97.4 0.00038 8.2E-09 64.6 6.6 46 158-203 24-74 (233)
80 PF12799 LRR_4: Leucine Rich r 97.4 0.00014 3.1E-09 49.1 2.9 38 334-373 1-38 (44)
81 PRK14961 DNA polymerase III su 97.4 0.0016 3.5E-08 67.1 11.8 46 158-203 16-62 (363)
82 PLN03025 replication factor C 97.4 0.00098 2.1E-08 67.5 10.1 46 158-203 13-58 (319)
83 KOG1909 Ran GTPase-activating 97.3 7.1E-05 1.5E-09 72.7 1.3 140 310-461 91-252 (382)
84 KOG3665 ZYG-1-like serine/thre 97.3 0.00013 2.9E-09 80.5 3.2 130 312-459 149-284 (699)
85 PLN03150 hypothetical protein; 97.3 0.00023 5E-09 78.8 5.0 82 313-410 420-502 (623)
86 PRK08116 hypothetical protein; 97.3 0.00042 9.2E-09 67.9 6.1 102 180-299 115-220 (268)
87 PRK04195 replication factor C 97.3 0.0011 2.4E-08 71.2 9.4 46 158-203 14-63 (482)
88 KOG0531 Protein phosphatase 1, 97.3 7.4E-05 1.6E-09 78.8 0.4 102 311-434 95-196 (414)
89 PRK14949 DNA polymerase III su 97.3 0.0012 2.6E-08 73.4 9.6 46 158-203 16-62 (944)
90 PF05621 TniB: Bacterial TniB 97.3 0.0033 7.1E-08 61.3 11.5 112 158-272 34-156 (302)
91 KOG2227 Pre-initiation complex 97.3 0.0038 8.2E-08 63.5 12.2 114 157-273 149-268 (529)
92 PRK14962 DNA polymerase III su 97.2 0.0019 4E-08 68.5 10.4 46 158-203 14-60 (472)
93 PRK14957 DNA polymerase III su 97.2 0.0018 3.9E-08 69.4 10.3 46 158-203 16-62 (546)
94 PRK14960 DNA polymerase III su 97.2 0.0021 4.5E-08 69.4 10.6 46 158-203 15-61 (702)
95 COG2909 MalT ATP-dependent tra 97.2 0.0053 1.1E-07 67.1 13.7 131 158-300 19-170 (894)
96 PRK12323 DNA polymerase III su 97.2 0.0026 5.7E-08 68.4 11.2 46 158-203 16-62 (700)
97 TIGR01242 26Sp45 26S proteasom 97.2 0.0005 1.1E-08 71.1 5.6 46 158-203 122-180 (364)
98 PRK14951 DNA polymerase III su 97.2 0.0025 5.4E-08 69.3 11.0 46 158-203 16-62 (618)
99 KOG0531 Protein phosphatase 1, 97.2 3.5E-05 7.5E-10 81.3 -3.3 123 312-461 73-197 (414)
100 PF04665 Pox_A32: Poxvirus A32 97.2 0.0013 2.7E-08 62.5 7.5 35 181-218 15-49 (241)
101 PHA02544 44 clamp loader, smal 97.1 0.0015 3.3E-08 66.2 8.7 46 158-203 21-67 (316)
102 PRK14963 DNA polymerase III su 97.1 0.00036 7.8E-09 74.5 4.2 46 158-203 14-60 (504)
103 COG0466 Lon ATP-dependent Lon 97.1 0.012 2.7E-07 63.1 14.9 51 157-210 322-378 (782)
104 PRK15386 type III secretion pr 97.1 0.00071 1.5E-08 69.0 5.6 115 446-600 48-167 (426)
105 PRK12727 flagellar biosynthesi 97.1 0.023 5E-07 60.0 16.7 40 178-218 349-388 (559)
106 PRK14958 DNA polymerase III su 97.1 0.0031 6.8E-08 67.5 10.7 46 158-203 16-62 (509)
107 smart00382 AAA ATPases associa 97.1 0.0017 3.8E-08 56.6 7.5 89 180-275 3-92 (148)
108 KOG2004 Mitochondrial ATP-depe 97.1 0.013 2.7E-07 62.8 14.5 65 157-227 410-480 (906)
109 PRK08691 DNA polymerase III su 97.1 0.0035 7.5E-08 68.3 10.6 46 158-203 16-62 (709)
110 CHL00095 clpC Clp protease ATP 97.1 0.002 4.4E-08 73.7 9.5 46 158-203 179-224 (821)
111 TIGR00763 lon ATP-dependent pr 97.1 0.011 2.3E-07 67.4 15.2 47 157-203 319-371 (775)
112 PRK10536 hypothetical protein; 97.1 0.004 8.6E-08 59.5 9.8 54 158-214 55-108 (262)
113 PRK10865 protein disaggregatio 97.0 0.0029 6.4E-08 72.4 10.3 46 158-203 178-223 (857)
114 PRK06645 DNA polymerase III su 97.0 0.0055 1.2E-07 65.3 11.5 46 158-203 21-67 (507)
115 PLN03150 hypothetical protein; 97.0 0.00092 2E-08 74.1 5.8 91 482-584 440-532 (623)
116 KOG3665 ZYG-1-like serine/thre 97.0 0.00014 3.1E-09 80.2 -0.5 32 312-343 123-157 (699)
117 KOG1947 Leucine rich repeat pr 97.0 0.00017 3.7E-09 78.0 -0.0 38 545-582 403-442 (482)
118 PRK07940 DNA polymerase III su 97.0 0.0054 1.2E-07 63.4 10.9 46 158-203 5-60 (394)
119 PRK05642 DNA replication initi 97.0 0.0018 4E-08 62.2 6.9 38 179-219 45-82 (234)
120 PRK14955 DNA polymerase III su 97.0 0.003 6.4E-08 66.0 9.0 46 158-203 16-62 (397)
121 TIGR02881 spore_V_K stage V sp 97.0 0.0037 8E-08 61.4 9.2 45 159-203 7-66 (261)
122 KOG1947 Leucine rich repeat pr 97.0 0.00016 3.4E-09 78.2 -0.6 121 332-464 186-309 (482)
123 COG0542 clpA ATP-binding subun 96.9 0.034 7.3E-07 61.4 16.9 105 158-273 491-605 (786)
124 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0033 7.2E-08 71.7 9.4 46 158-203 187-232 (852)
125 PRK14964 DNA polymerase III su 96.9 0.0071 1.5E-07 64.0 11.1 46 158-203 13-59 (491)
126 PRK14956 DNA polymerase III su 96.9 0.0033 7.1E-08 65.8 8.4 46 158-203 18-64 (484)
127 PRK05896 DNA polymerase III su 96.9 0.0044 9.6E-08 66.7 9.5 46 158-203 16-62 (605)
128 TIGR02639 ClpA ATP-dependent C 96.9 0.0047 1E-07 69.9 10.3 46 158-203 182-227 (731)
129 TIGR02397 dnaX_nterm DNA polym 96.9 0.0094 2E-07 61.6 11.8 46 158-203 14-60 (355)
130 PF05673 DUF815: Protein of un 96.9 0.009 2E-07 56.4 10.3 46 158-203 27-76 (249)
131 PRK14969 DNA polymerase III su 96.9 0.0086 1.9E-07 64.7 11.6 46 158-203 16-62 (527)
132 CHL00181 cbbX CbbX; Provisiona 96.9 0.01 2.2E-07 58.8 11.3 46 158-203 23-83 (287)
133 PF00004 AAA: ATPase family as 96.9 0.002 4.4E-08 55.7 5.7 22 182-203 1-22 (132)
134 PRK07994 DNA polymerase III su 96.9 0.0039 8.5E-08 68.0 9.0 46 158-203 16-62 (647)
135 PRK14722 flhF flagellar biosyn 96.8 0.13 2.8E-06 52.5 19.2 89 178-271 136-225 (374)
136 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0018 3.8E-08 65.1 5.6 46 158-203 51-102 (361)
137 PRK07261 topology modulation p 96.8 0.0026 5.6E-08 57.9 6.1 23 181-203 2-24 (171)
138 PRK10787 DNA-binding ATP-depen 96.8 0.013 2.9E-07 66.1 13.0 47 157-203 321-373 (784)
139 PRK14970 DNA polymerase III su 96.8 0.0074 1.6E-07 62.6 10.3 46 158-203 17-63 (367)
140 PRK12608 transcription termina 96.8 0.0073 1.6E-07 61.0 9.7 103 168-272 121-231 (380)
141 PRK03992 proteasome-activating 96.8 0.0057 1.2E-07 63.6 9.3 46 158-203 131-189 (389)
142 PRK10865 protein disaggregatio 96.8 0.23 5E-06 57.2 22.9 46 158-203 568-622 (857)
143 PF13207 AAA_17: AAA domain; P 96.8 0.0012 2.7E-08 56.2 3.6 23 181-203 1-23 (121)
144 PRK08181 transposase; Validate 96.8 0.0022 4.8E-08 62.5 5.7 78 172-272 101-178 (269)
145 PRK12377 putative replication 96.8 0.011 2.3E-07 57.0 10.3 74 178-271 100-173 (248)
146 PRK06835 DNA replication prote 96.8 0.068 1.5E-06 53.9 16.3 50 166-218 168-219 (329)
147 TIGR00678 holB DNA polymerase 96.8 0.015 3.2E-07 53.9 11.0 35 169-203 3-38 (188)
148 KOG1859 Leucine-rich repeat pr 96.7 0.0002 4.4E-09 75.9 -2.1 103 312-435 188-290 (1096)
149 PRK08084 DNA replication initi 96.7 0.0071 1.5E-07 58.2 8.6 60 158-220 23-83 (235)
150 PRK09361 radB DNA repair and r 96.7 0.0087 1.9E-07 57.3 9.1 89 178-271 22-117 (225)
151 PRK00771 signal recognition pa 96.7 0.099 2.2E-06 54.8 17.3 90 178-271 94-185 (437)
152 PRK09111 DNA polymerase III su 96.7 0.0083 1.8E-07 65.4 9.7 46 158-203 24-70 (598)
153 PRK07764 DNA polymerase III su 96.6 0.01 2.3E-07 67.0 10.6 46 158-203 15-61 (824)
154 TIGR02880 cbbX_cfxQ probable R 96.6 0.013 2.9E-07 58.0 10.3 45 159-203 23-82 (284)
155 PRK14952 DNA polymerase III su 96.6 0.013 2.9E-07 63.5 10.9 46 158-203 13-59 (584)
156 TIGR02237 recomb_radB DNA repa 96.6 0.008 1.7E-07 56.9 8.2 89 178-271 11-107 (209)
157 TIGR03689 pup_AAA proteasome A 96.6 0.0073 1.6E-07 64.1 8.4 46 158-203 182-240 (512)
158 PRK14954 DNA polymerase III su 96.6 0.014 3E-07 63.9 10.5 46 158-203 16-62 (620)
159 PF12061 DUF3542: Protein of u 96.6 0.0037 8E-08 59.8 5.3 72 14-92 302-373 (402)
160 TIGR03346 chaperone_ClpB ATP-d 96.5 0.0081 1.7E-07 69.1 9.0 46 158-203 173-218 (852)
161 PRK14950 DNA polymerase III su 96.5 0.019 4.1E-07 63.2 11.3 46 158-203 16-62 (585)
162 PRK06921 hypothetical protein; 96.5 0.0066 1.4E-07 59.4 6.9 39 178-218 116-154 (266)
163 cd01393 recA_like RecA is a b 96.5 0.031 6.7E-07 53.5 11.6 91 178-272 18-125 (226)
164 PRK14959 DNA polymerase III su 96.5 0.016 3.5E-07 62.8 10.2 46 158-203 16-62 (624)
165 COG1484 DnaC DNA replication p 96.5 0.018 3.9E-07 55.9 9.7 75 178-272 104-178 (254)
166 KOG0733 Nuclear AAA ATPase (VC 96.5 0.014 3.1E-07 61.3 9.2 92 158-272 190-293 (802)
167 PRK06696 uridine kinase; Valid 96.4 0.0057 1.2E-07 58.5 6.0 42 162-203 2-46 (223)
168 KOG1859 Leucine-rich repeat pr 96.4 0.00037 7.9E-09 74.1 -2.6 53 316-371 169-221 (1096)
169 PF00308 Bac_DnaA: Bacterial d 96.4 0.024 5.2E-07 53.9 10.0 123 158-299 9-139 (219)
170 PRK09183 transposase/IS protei 96.4 0.0063 1.4E-07 59.4 6.1 26 178-203 101-126 (259)
171 PTZ00454 26S protease regulato 96.4 0.0068 1.5E-07 62.8 6.7 46 158-203 145-203 (398)
172 PRK14971 DNA polymerase III su 96.4 0.024 5.2E-07 62.3 11.2 46 158-203 17-63 (614)
173 TIGR03346 chaperone_ClpB ATP-d 96.4 0.018 3.9E-07 66.3 10.7 60 158-220 565-633 (852)
174 PRK15455 PrkA family serine pr 96.3 0.0045 9.8E-08 65.5 5.1 45 159-203 77-127 (644)
175 cd00983 recA RecA is a bacter 96.3 0.012 2.6E-07 58.7 7.8 86 178-271 54-143 (325)
176 COG1373 Predicted ATPase (AAA+ 96.3 0.018 3.8E-07 60.0 9.4 113 163-303 22-134 (398)
177 PRK06526 transposase; Provisio 96.3 0.0044 9.6E-08 60.1 4.6 26 178-203 97-122 (254)
178 KOG2982 Uncharacterized conser 96.3 0.0025 5.5E-08 60.8 2.7 83 506-600 198-287 (418)
179 cd01394 radB RadB. The archaea 96.3 0.038 8.3E-07 52.6 10.9 43 178-223 18-60 (218)
180 PRK05541 adenylylsulfate kinas 96.3 0.01 2.2E-07 54.4 6.6 36 178-216 6-41 (176)
181 cd01131 PilT Pilus retraction 96.3 0.0055 1.2E-07 57.3 4.9 109 180-304 2-113 (198)
182 TIGR03345 VI_ClpV1 type VI sec 96.3 0.018 3.9E-07 65.9 9.8 47 157-203 565-620 (852)
183 CHL00095 clpC Clp protease ATP 96.2 0.41 8.8E-06 55.2 20.6 46 158-203 509-563 (821)
184 PF08423 Rad51: Rad51; InterP 96.2 0.025 5.4E-07 55.1 9.3 92 178-271 37-143 (256)
185 PRK14948 DNA polymerase III su 96.2 0.036 7.8E-07 61.0 11.5 46 158-203 16-62 (620)
186 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.026 5.5E-07 54.5 9.4 93 178-272 18-126 (235)
187 PRK06305 DNA polymerase III su 96.2 0.024 5.3E-07 60.0 9.8 46 158-203 17-63 (451)
188 PRK09354 recA recombinase A; P 96.2 0.018 3.8E-07 58.0 8.2 87 178-272 59-149 (349)
189 TIGR02639 ClpA ATP-dependent C 96.2 0.0092 2E-07 67.5 7.0 47 157-203 453-508 (731)
190 PRK07952 DNA replication prote 96.2 0.038 8.2E-07 53.1 10.1 89 166-273 84-174 (244)
191 KOG0989 Replication factor C, 96.1 0.015 3.3E-07 56.0 7.0 124 158-296 36-165 (346)
192 PF13177 DNA_pol3_delta2: DNA 96.1 0.056 1.2E-06 48.6 10.5 119 162-300 1-142 (162)
193 TIGR02238 recomb_DMC1 meiotic 96.1 0.04 8.6E-07 55.2 10.3 92 178-271 95-201 (313)
194 TIGR02012 tigrfam_recA protein 96.1 0.021 4.6E-07 57.0 8.3 87 178-272 54-144 (321)
195 TIGR03499 FlhF flagellar biosy 96.1 0.039 8.4E-07 54.7 10.1 87 178-269 193-280 (282)
196 KOG0741 AAA+-type ATPase [Post 96.1 0.032 6.9E-07 57.7 9.4 108 178-307 537-658 (744)
197 COG0572 Udk Uridine kinase [Nu 96.1 0.019 4.1E-07 53.3 7.2 79 178-262 7-85 (218)
198 PTZ00361 26 proteosome regulat 96.1 0.011 2.4E-07 61.9 6.4 46 158-203 183-241 (438)
199 PRK14088 dnaA chromosomal repl 96.1 0.018 3.9E-07 60.9 8.1 97 158-273 106-206 (440)
200 PRK08451 DNA polymerase III su 96.1 0.047 1E-06 58.5 11.2 46 158-203 14-60 (535)
201 PRK14953 DNA polymerase III su 96.1 0.054 1.2E-06 57.8 11.7 46 158-203 16-62 (486)
202 PRK14965 DNA polymerase III su 96.1 0.034 7.4E-07 60.9 10.4 46 158-203 16-62 (576)
203 PRK07471 DNA polymerase III su 96.1 0.054 1.2E-06 55.6 11.2 46 158-203 19-65 (365)
204 PRK06547 hypothetical protein; 96.1 0.0097 2.1E-07 54.0 5.2 36 168-203 4-39 (172)
205 cd01120 RecA-like_NTPases RecA 96.1 0.049 1.1E-06 48.8 9.9 39 181-222 1-39 (165)
206 PF00448 SRP54: SRP54-type pro 96.1 0.021 4.5E-07 53.1 7.4 89 179-270 1-92 (196)
207 COG1222 RPT1 ATP-dependent 26S 96.0 0.045 9.8E-07 54.1 9.8 46 158-203 151-209 (406)
208 COG2884 FtsE Predicted ATPase 96.0 0.041 8.8E-07 49.5 8.6 125 178-307 27-204 (223)
209 COG1618 Predicted nucleotide k 96.0 0.01 2.2E-07 51.6 4.6 25 179-203 5-29 (179)
210 PRK09270 nucleoside triphospha 96.0 0.047 1E-06 52.4 9.8 27 177-203 31-57 (229)
211 TIGR00602 rad24 checkpoint pro 96.0 0.0085 1.8E-07 65.4 5.1 46 158-203 84-134 (637)
212 PLN03187 meiotic recombination 96.0 0.046 1E-06 55.3 9.9 92 178-271 125-231 (344)
213 TIGR02239 recomb_RAD51 DNA rep 95.9 0.053 1.1E-06 54.5 10.3 58 178-237 95-156 (316)
214 cd01133 F1-ATPase_beta F1 ATP 95.9 0.037 8E-07 53.8 8.7 92 178-272 68-174 (274)
215 TIGR01241 FtsH_fam ATP-depende 95.9 0.024 5.2E-07 61.2 8.3 46 158-203 55-112 (495)
216 PF00485 PRK: Phosphoribulokin 95.9 0.058 1.2E-06 50.3 9.9 82 181-265 1-87 (194)
217 COG2255 RuvB Holliday junction 95.9 0.011 2.4E-07 56.3 4.9 46 158-203 26-76 (332)
218 COG1875 NYN ribonuclease and A 95.9 0.021 4.5E-07 56.5 6.7 40 162-201 228-267 (436)
219 COG4608 AppF ABC-type oligopep 95.9 0.036 7.8E-07 53.0 8.2 125 178-308 38-178 (268)
220 COG1136 SalX ABC-type antimicr 95.9 0.035 7.5E-07 52.2 8.0 125 178-308 30-211 (226)
221 PRK07133 DNA polymerase III su 95.9 0.062 1.3E-06 59.4 11.1 46 158-203 18-64 (725)
222 cd03115 SRP The signal recogni 95.9 0.04 8.6E-07 50.3 8.3 23 181-203 2-24 (173)
223 COG0470 HolB ATPase involved i 95.9 0.065 1.4E-06 54.5 10.8 120 159-298 2-147 (325)
224 PF00560 LRR_1: Leucine Rich R 95.8 0.0026 5.6E-08 35.7 0.2 19 313-331 2-20 (22)
225 PF01695 IstB_IS21: IstB-like 95.8 0.022 4.8E-07 52.1 6.1 75 178-273 46-120 (178)
226 PRK10463 hydrogenase nickel in 95.7 0.05 1.1E-06 53.2 8.8 34 170-203 95-128 (290)
227 TIGR00362 DnaA chromosomal rep 95.7 0.057 1.2E-06 56.8 10.1 76 179-273 136-211 (405)
228 KOG0735 AAA+-type ATPase [Post 95.7 0.023 5E-07 60.8 6.8 74 178-272 430-505 (952)
229 PRK08939 primosomal protein Dn 95.7 0.081 1.7E-06 52.9 10.4 117 162-299 135-260 (306)
230 PLN00020 ribulose bisphosphate 95.7 0.018 3.9E-07 57.7 5.7 26 178-203 147-172 (413)
231 KOG3864 Uncharacterized conser 95.7 0.0011 2.5E-08 59.7 -2.4 71 445-523 120-192 (221)
232 PRK04296 thymidine kinase; Pro 95.7 0.021 4.6E-07 52.9 5.8 113 180-301 3-117 (190)
233 PRK05480 uridine/cytidine kina 95.7 0.011 2.5E-07 55.8 4.0 27 177-203 4-30 (209)
234 PRK06647 DNA polymerase III su 95.7 0.093 2E-06 57.1 11.4 46 158-203 16-62 (563)
235 PF13238 AAA_18: AAA domain; P 95.7 0.01 2.2E-07 51.0 3.4 22 182-203 1-22 (129)
236 PHA00729 NTP-binding motif con 95.6 0.018 3.9E-07 54.1 5.1 35 169-203 7-41 (226)
237 KOG0991 Replication factor C, 95.6 0.02 4.2E-07 52.9 5.1 46 158-203 27-72 (333)
238 KOG2123 Uncharacterized conser 95.6 0.00054 1.2E-08 64.6 -5.1 34 482-516 39-72 (388)
239 KOG1644 U2-associated snRNP A' 95.6 0.017 3.7E-07 52.3 4.6 107 424-553 42-150 (233)
240 PLN03186 DNA repair protein RA 95.6 0.12 2.6E-06 52.4 11.2 59 178-238 122-184 (342)
241 PRK08233 hypothetical protein; 95.6 0.011 2.3E-07 54.5 3.4 25 179-203 3-27 (182)
242 PRK06067 flagellar accessory p 95.6 0.095 2.1E-06 50.5 10.1 88 178-271 24-130 (234)
243 CHL00176 ftsH cell division pr 95.5 0.041 8.9E-07 60.6 8.2 46 158-203 183-240 (638)
244 cd01121 Sms Sms (bacterial rad 95.5 0.06 1.3E-06 55.3 8.9 86 178-272 81-169 (372)
245 COG0468 RecA RecA/RadA recombi 95.5 0.069 1.5E-06 52.1 8.9 91 178-272 59-152 (279)
246 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.099 2.1E-06 50.4 10.0 49 178-231 20-68 (237)
247 TIGR00959 ffh signal recogniti 95.5 0.081 1.8E-06 55.3 9.9 92 178-271 98-192 (428)
248 TIGR02236 recomb_radA DNA repa 95.5 0.11 2.3E-06 52.5 10.6 58 178-237 94-155 (310)
249 PRK14087 dnaA chromosomal repl 95.5 0.053 1.2E-06 57.4 8.6 124 159-299 117-248 (450)
250 PRK14086 dnaA chromosomal repl 95.5 0.028 6.1E-07 60.7 6.4 101 180-299 315-419 (617)
251 KOG1644 U2-associated snRNP A' 95.5 0.026 5.6E-07 51.2 5.2 36 335-373 43-78 (233)
252 TIGR00064 ftsY signal recognit 95.5 0.11 2.3E-06 51.2 10.0 56 178-237 71-128 (272)
253 PRK05563 DNA polymerase III su 95.5 0.16 3.4E-06 55.5 12.4 46 158-203 16-62 (559)
254 TIGR00554 panK_bact pantothena 95.5 0.095 2.1E-06 51.7 9.7 78 177-261 60-141 (290)
255 PRK04301 radA DNA repair and r 95.4 0.13 2.8E-06 52.0 11.0 58 178-237 101-162 (317)
256 COG1126 GlnQ ABC-type polar am 95.4 0.08 1.7E-06 48.8 8.2 127 178-308 27-204 (240)
257 TIGR02858 spore_III_AA stage I 95.4 0.091 2E-06 51.4 9.3 129 167-304 98-233 (270)
258 PRK07667 uridine kinase; Provi 95.4 0.026 5.6E-07 52.5 5.4 37 167-203 3-41 (193)
259 PTZ00301 uridine kinase; Provi 95.4 0.016 3.4E-07 54.5 3.9 25 179-203 3-27 (210)
260 TIGR00235 udk uridine kinase. 95.4 0.014 3.1E-07 55.0 3.6 26 178-203 5-30 (207)
261 PRK11034 clpA ATP-dependent Cl 95.4 0.022 4.8E-07 63.9 5.7 46 158-203 458-512 (758)
262 KOG1969 DNA replication checkp 95.4 0.043 9.3E-07 59.1 7.4 73 178-273 325-399 (877)
263 PRK11889 flhF flagellar biosyn 95.4 0.11 2.3E-06 53.0 9.9 88 178-270 240-329 (436)
264 PF00154 RecA: recA bacterial 95.4 0.082 1.8E-06 52.7 9.0 94 178-279 52-149 (322)
265 PRK00149 dnaA chromosomal repl 95.4 0.047 1E-06 58.2 7.9 93 159-272 124-222 (450)
266 PRK10867 signal recognition pa 95.4 0.095 2E-06 54.8 9.9 91 178-271 99-193 (433)
267 cd02025 PanK Pantothenate kina 95.4 0.094 2E-06 49.8 9.2 23 181-203 1-23 (220)
268 TIGR01243 CDC48 AAA family ATP 95.4 0.042 9.1E-07 62.4 7.9 46 158-203 178-236 (733)
269 PRK08903 DnaA regulatory inact 95.4 0.037 8E-07 53.1 6.4 43 161-203 22-66 (227)
270 PRK11034 clpA ATP-dependent Cl 95.4 0.02 4.4E-07 64.2 5.2 46 158-203 186-231 (758)
271 cd02019 NK Nucleoside/nucleoti 95.4 0.015 3.2E-07 43.9 2.9 23 181-203 1-23 (69)
272 cd03238 ABC_UvrA The excision 95.4 0.048 1E-06 49.7 6.8 116 178-304 20-153 (176)
273 PF03205 MobB: Molybdopterin g 95.3 0.032 7E-07 48.7 5.4 39 180-220 1-39 (140)
274 PRK12422 chromosomal replicati 95.3 0.053 1.1E-06 57.3 7.9 73 180-273 142-214 (445)
275 PRK14974 cell division protein 95.3 0.18 4E-06 50.9 11.4 57 178-238 139-197 (336)
276 cd03214 ABC_Iron-Siderophores_ 95.3 0.059 1.3E-06 49.5 7.3 121 178-303 24-161 (180)
277 PRK13531 regulatory ATPase Rav 95.2 0.036 7.7E-07 58.1 6.1 44 158-203 20-63 (498)
278 TIGR01425 SRP54_euk signal rec 95.2 0.92 2E-05 47.3 16.2 38 178-218 99-136 (429)
279 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.067 1.4E-06 47.1 6.9 104 178-304 25-131 (144)
280 TIGR00390 hslU ATP-dependent p 95.1 0.057 1.2E-06 55.4 7.1 75 157-234 11-103 (441)
281 PF13671 AAA_33: AAA domain; P 95.1 0.02 4.2E-07 50.3 3.5 23 181-203 1-23 (143)
282 KOG2739 Leucine-rich acidic nu 95.1 0.0057 1.2E-07 57.6 -0.0 67 445-521 60-130 (260)
283 PRK12724 flagellar biosynthesi 95.1 0.1 2.2E-06 53.8 8.9 25 179-203 223-247 (432)
284 PRK03839 putative kinase; Prov 95.1 0.019 4.2E-07 52.8 3.4 23 181-203 2-24 (180)
285 PRK06762 hypothetical protein; 95.1 0.022 4.7E-07 51.6 3.7 24 180-203 3-26 (166)
286 PRK12726 flagellar biosynthesi 95.1 0.32 6.9E-06 49.5 12.1 88 178-270 205-294 (407)
287 cd01129 PulE-GspE PulE/GspE Th 95.1 0.068 1.5E-06 52.3 7.3 127 161-304 62-188 (264)
288 COG5238 RNA1 Ran GTPase-activa 95.1 0.006 1.3E-07 57.6 -0.1 251 311-584 30-319 (388)
289 cd03247 ABCC_cytochrome_bd The 95.0 0.061 1.3E-06 49.3 6.6 119 178-304 27-161 (178)
290 COG0593 DnaA ATPase involved i 95.0 0.038 8.3E-07 56.6 5.6 102 178-299 112-217 (408)
291 COG2607 Predicted ATPase (AAA+ 95.0 0.23 5.1E-06 46.4 9.9 46 158-203 60-109 (287)
292 TIGR01360 aden_kin_iso1 adenyl 94.9 0.024 5.3E-07 52.4 3.7 26 178-203 2-27 (188)
293 COG0541 Ffh Signal recognition 94.9 1.7 3.8E-05 44.6 16.7 59 178-240 99-159 (451)
294 KOG1514 Origin recognition com 94.9 0.34 7.4E-06 52.3 12.3 109 158-272 396-519 (767)
295 PTZ00035 Rad51 protein; Provis 94.9 0.33 7.3E-06 49.3 12.0 92 178-271 117-223 (337)
296 COG3903 Predicted ATPase [Gene 94.9 0.029 6.2E-07 56.6 4.2 87 178-273 13-100 (414)
297 TIGR00150 HI0065_YjeE ATPase, 94.9 0.054 1.2E-06 46.5 5.3 39 165-203 6-46 (133)
298 KOG2739 Leucine-rich acidic nu 94.9 0.01 2.2E-07 56.0 0.9 110 312-437 44-156 (260)
299 PRK05703 flhF flagellar biosyn 94.9 0.13 2.9E-06 53.9 9.3 87 179-270 221-308 (424)
300 COG1428 Deoxynucleoside kinase 94.9 0.023 5E-07 52.1 3.1 49 179-233 4-52 (216)
301 cd03230 ABC_DR_subfamily_A Thi 94.9 0.043 9.3E-07 50.1 5.0 117 178-304 25-159 (173)
302 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.26 5.6E-06 47.2 10.7 48 178-230 19-66 (229)
303 KOG4579 Leucine-rich repeat (L 94.8 0.0083 1.8E-07 50.7 0.2 86 312-414 28-116 (177)
304 PRK12723 flagellar biosynthesi 94.8 0.2 4.2E-06 51.7 10.1 88 178-271 173-264 (388)
305 PRK04040 adenylate kinase; Pro 94.8 0.028 6E-07 51.9 3.6 24 180-203 3-26 (188)
306 COG0467 RAD55 RecA-superfamily 94.8 0.073 1.6E-06 52.2 6.8 51 178-233 22-72 (260)
307 PRK04328 hypothetical protein; 94.8 0.16 3.6E-06 49.3 9.2 41 178-221 22-62 (249)
308 cd03246 ABCC_Protease_Secretio 94.8 0.05 1.1E-06 49.6 5.3 26 178-203 27-52 (173)
309 COG3640 CooC CO dehydrogenase 94.8 0.065 1.4E-06 49.9 5.8 50 181-239 2-51 (255)
310 PRK09087 hypothetical protein; 94.7 0.12 2.6E-06 49.3 7.8 26 178-203 43-68 (226)
311 cd03223 ABCD_peroxisomal_ALDP 94.7 0.079 1.7E-06 47.9 6.3 115 178-304 26-152 (166)
312 PRK13765 ATP-dependent proteas 94.7 0.064 1.4E-06 58.9 6.7 74 158-236 31-104 (637)
313 PF07728 AAA_5: AAA domain (dy 94.7 0.082 1.8E-06 46.1 6.3 44 182-231 2-45 (139)
314 PRK07399 DNA polymerase III su 94.7 0.35 7.6E-06 48.6 11.4 46 158-203 4-50 (314)
315 PRK08058 DNA polymerase III su 94.7 0.27 5.8E-06 50.0 10.7 45 159-203 6-52 (329)
316 KOG0744 AAA+-type ATPase [Post 94.7 0.11 2.5E-06 50.5 7.4 81 179-272 177-261 (423)
317 cd02023 UMPK Uridine monophosp 94.7 0.022 4.8E-07 53.3 2.7 23 181-203 1-23 (198)
318 PRK00625 shikimate kinase; Pro 94.6 0.029 6.2E-07 51.0 3.2 23 181-203 2-24 (173)
319 cd00561 CobA_CobO_BtuR ATP:cor 94.6 0.16 3.5E-06 45.1 7.8 116 180-300 3-138 (159)
320 KOG0734 AAA+-type ATPase conta 94.6 0.13 2.9E-06 53.4 8.1 46 158-203 304-361 (752)
321 cd02027 APSK Adenosine 5'-phos 94.6 0.18 3.8E-06 44.7 8.1 23 181-203 1-23 (149)
322 PF07726 AAA_3: ATPase family 94.6 0.025 5.4E-07 47.7 2.4 27 182-211 2-28 (131)
323 COG1066 Sms Predicted ATP-depe 94.6 0.28 6.1E-06 49.7 10.1 94 169-272 81-179 (456)
324 PRK05201 hslU ATP-dependent pr 94.6 0.1 2.2E-06 53.7 7.2 47 157-203 14-74 (443)
325 cd02024 NRK1 Nicotinamide ribo 94.5 0.027 5.9E-07 51.7 2.8 23 181-203 1-23 (187)
326 COG0563 Adk Adenylate kinase a 94.5 0.07 1.5E-06 48.7 5.5 23 181-203 2-24 (178)
327 KOG4579 Leucine-rich repeat (L 94.5 0.0089 1.9E-07 50.6 -0.3 59 312-372 54-113 (177)
328 cd02028 UMPK_like Uridine mono 94.5 0.04 8.7E-07 50.5 3.9 23 181-203 1-23 (179)
329 KOG2123 Uncharacterized conser 94.5 0.0045 9.7E-08 58.6 -2.4 54 314-371 22-75 (388)
330 PF00560 LRR_1: Leucine Rich R 94.5 0.012 2.6E-07 32.9 0.3 22 335-358 1-22 (22)
331 PRK06995 flhF flagellar biosyn 94.5 0.22 4.8E-06 52.7 9.8 60 179-239 256-316 (484)
332 COG3899 Predicted ATPase [Gene 94.5 0.075 1.6E-06 60.9 6.8 44 160-203 2-48 (849)
333 cd03216 ABC_Carb_Monos_I This 94.5 0.041 8.9E-07 49.6 3.9 116 178-303 25-145 (163)
334 PF02562 PhoH: PhoH-like prote 94.5 0.062 1.3E-06 49.9 5.1 53 162-217 4-56 (205)
335 PRK14721 flhF flagellar biosyn 94.5 0.35 7.6E-06 50.3 11.1 61 178-239 190-251 (420)
336 PF13504 LRR_7: Leucine rich r 94.4 0.026 5.6E-07 29.3 1.4 17 567-584 1-17 (17)
337 cd03228 ABCC_MRP_Like The MRP 94.4 0.071 1.5E-06 48.5 5.4 119 178-305 27-160 (171)
338 PRK05439 pantothenate kinase; 94.4 0.4 8.7E-06 47.7 10.8 81 177-262 84-166 (311)
339 PF01583 APS_kinase: Adenylyls 94.4 0.068 1.5E-06 47.2 4.8 36 179-217 2-37 (156)
340 TIGR01420 pilT_fam pilus retra 94.4 0.062 1.3E-06 54.9 5.3 115 177-304 120-234 (343)
341 TIGR00764 lon_rel lon-related 94.4 0.13 2.7E-06 56.7 8.0 74 158-236 18-91 (608)
342 KOG2228 Origin recognition com 94.3 0.29 6.2E-06 48.2 9.3 137 158-300 24-182 (408)
343 PRK08533 flagellar accessory p 94.3 0.3 6.4E-06 46.8 9.6 53 178-236 23-75 (230)
344 PRK10751 molybdopterin-guanine 94.3 0.05 1.1E-06 49.1 3.9 26 178-203 5-30 (173)
345 TIGR02322 phosphon_PhnN phosph 94.3 0.039 8.4E-07 50.7 3.4 24 180-203 2-25 (179)
346 TIGR01359 UMP_CMP_kin_fam UMP- 94.3 0.032 6.9E-07 51.4 2.8 23 181-203 1-23 (183)
347 PTZ00088 adenylate kinase 1; P 94.3 0.12 2.7E-06 49.2 6.8 22 182-203 9-30 (229)
348 PRK11823 DNA repair protein Ra 94.3 0.18 3.9E-06 53.4 8.7 86 178-272 79-167 (446)
349 KOG1532 GTPase XAB1, interacts 94.3 0.058 1.3E-06 51.1 4.4 62 178-240 18-88 (366)
350 COG1102 Cmk Cytidylate kinase 94.3 0.038 8.3E-07 48.2 2.9 46 180-239 1-46 (179)
351 cd01135 V_A-ATPase_B V/A-type 94.2 0.2 4.4E-06 48.6 8.2 94 178-272 68-177 (276)
352 PF00625 Guanylate_kin: Guanyl 94.2 0.06 1.3E-06 49.6 4.5 36 179-217 2-37 (183)
353 PF00910 RNA_helicase: RNA hel 94.2 0.037 8E-07 45.9 2.8 22 182-203 1-22 (107)
354 KOG0736 Peroxisome assembly fa 94.2 0.33 7.1E-06 53.0 10.3 93 158-273 672-776 (953)
355 PRK00889 adenylylsulfate kinas 94.2 0.053 1.2E-06 49.5 4.0 26 178-203 3-28 (175)
356 PRK10416 signal recognition pa 94.2 0.64 1.4E-05 46.8 12.0 26 178-203 113-138 (318)
357 PRK06217 hypothetical protein; 94.2 0.037 8.1E-07 51.0 3.0 23 181-203 3-25 (183)
358 KOG3347 Predicted nucleotide k 94.2 0.082 1.8E-06 45.4 4.7 71 180-263 8-78 (176)
359 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.068 1.5E-06 50.5 4.8 121 179-306 29-160 (213)
360 CHL00195 ycf46 Ycf46; Provisio 94.1 0.13 2.8E-06 54.8 7.3 46 158-203 228-283 (489)
361 PF06309 Torsin: Torsin; Inte 94.1 0.12 2.6E-06 43.5 5.5 46 158-203 25-77 (127)
362 PRK09519 recA DNA recombinatio 94.1 0.21 4.5E-06 55.8 8.9 86 178-271 59-148 (790)
363 TIGR03575 selen_PSTK_euk L-ser 94.1 0.2 4.4E-06 50.5 8.1 37 182-220 2-38 (340)
364 PRK00131 aroK shikimate kinase 94.1 0.05 1.1E-06 49.6 3.6 25 179-203 4-28 (175)
365 TIGR02030 BchI-ChlI magnesium 94.0 0.086 1.9E-06 53.3 5.5 46 158-203 4-49 (337)
366 PRK14723 flhF flagellar biosyn 94.0 0.33 7.2E-06 54.1 10.3 88 179-271 185-273 (767)
367 cd02020 CMPK Cytidine monophos 94.0 0.042 9E-07 48.5 2.9 23 181-203 1-23 (147)
368 COG1124 DppF ABC-type dipeptid 94.0 0.058 1.3E-06 50.6 3.8 26 178-203 32-57 (252)
369 PF00158 Sigma54_activat: Sigm 94.0 0.22 4.7E-06 45.0 7.5 68 160-231 1-70 (168)
370 PF12775 AAA_7: P-loop contain 94.0 0.057 1.2E-06 53.0 4.0 89 167-271 22-110 (272)
371 COG0464 SpoVK ATPases of the A 94.0 0.13 2.8E-06 55.7 7.1 93 158-273 242-347 (494)
372 PF05659 RPW8: Arabidopsis bro 93.9 0.24 5.2E-06 43.4 7.3 108 5-129 7-114 (147)
373 PRK15453 phosphoribulokinase; 93.9 0.38 8.2E-06 46.8 9.3 81 177-260 3-89 (290)
374 TIGR02655 circ_KaiC circadian 93.9 0.38 8.3E-06 51.7 10.5 97 169-271 251-363 (484)
375 PF13481 AAA_25: AAA domain; P 93.9 0.28 6.1E-06 45.5 8.4 42 179-221 32-81 (193)
376 CHL00081 chlI Mg-protoporyphyr 93.9 0.089 1.9E-06 53.3 5.2 46 158-203 17-62 (350)
377 COG0542 clpA ATP-binding subun 93.8 0.078 1.7E-06 58.7 5.0 99 158-273 170-274 (786)
378 cd00227 CPT Chloramphenicol (C 93.8 0.061 1.3E-06 49.1 3.7 25 179-203 2-26 (175)
379 TIGR00416 sms DNA repair prote 93.8 0.24 5.2E-06 52.5 8.5 86 178-272 93-181 (454)
380 PF13245 AAA_19: Part of AAA d 93.8 0.24 5.2E-06 38.0 6.3 26 178-203 9-34 (76)
381 PRK13949 shikimate kinase; Pro 93.8 0.051 1.1E-06 49.3 3.0 23 181-203 3-25 (169)
382 TIGR00176 mobB molybdopterin-g 93.8 0.096 2.1E-06 46.7 4.7 23 181-203 1-23 (155)
383 COG4088 Predicted nucleotide k 93.8 0.046 1E-06 49.7 2.6 24 180-203 2-25 (261)
384 PRK06002 fliI flagellum-specif 93.8 0.19 4E-06 52.5 7.4 89 178-272 164-265 (450)
385 PRK12597 F0F1 ATP synthase sub 93.7 0.25 5.4E-06 52.0 8.3 93 178-272 142-248 (461)
386 PRK13947 shikimate kinase; Pro 93.7 0.055 1.2E-06 49.2 3.2 23 181-203 3-25 (171)
387 COG1936 Predicted nucleotide k 93.7 0.05 1.1E-06 48.2 2.7 20 181-200 2-21 (180)
388 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.11 2.4E-06 46.5 5.1 114 178-305 24-145 (157)
389 TIGR03263 guanyl_kin guanylate 93.7 0.05 1.1E-06 50.0 2.9 24 180-203 2-25 (180)
390 TIGR01243 CDC48 AAA family ATP 93.7 0.18 3.9E-06 57.4 7.9 46 158-203 453-511 (733)
391 cd02021 GntK Gluconate kinase 93.6 0.051 1.1E-06 48.2 2.8 23 181-203 1-23 (150)
392 cd00071 GMPK Guanosine monopho 93.6 0.052 1.1E-06 47.3 2.7 23 181-203 1-23 (137)
393 COG0003 ArsA Predicted ATPase 93.6 0.14 2.9E-06 51.3 5.9 49 179-230 2-50 (322)
394 PF08477 Miro: Miro-like prote 93.6 0.061 1.3E-06 45.4 3.1 22 182-203 2-23 (119)
395 TIGR00073 hypB hydrogenase acc 93.6 0.085 1.8E-06 49.7 4.3 32 172-203 15-46 (207)
396 PRK00300 gmk guanylate kinase; 93.6 0.058 1.3E-06 50.7 3.2 26 178-203 4-29 (205)
397 cd02029 PRK_like Phosphoribulo 93.6 0.4 8.6E-06 46.3 8.7 79 181-262 1-85 (277)
398 PTZ00185 ATPase alpha subunit; 93.6 0.44 9.5E-06 50.2 9.6 95 178-273 188-301 (574)
399 PRK00279 adk adenylate kinase; 93.6 0.35 7.6E-06 45.8 8.5 23 181-203 2-24 (215)
400 PF08433 KTI12: Chromatin asso 93.5 0.11 2.4E-06 50.8 5.1 23 181-203 3-25 (270)
401 PRK03846 adenylylsulfate kinas 93.5 0.077 1.7E-06 49.6 3.9 27 177-203 22-48 (198)
402 PF03266 NTPase_1: NTPase; In 93.5 0.11 2.3E-06 47.0 4.6 22 182-203 2-23 (168)
403 PRK12678 transcription termina 93.5 0.15 3.2E-06 54.3 6.1 90 178-272 415-514 (672)
404 COG1419 FlhF Flagellar GTP-bin 93.5 0.82 1.8E-05 46.7 11.2 101 164-270 184-290 (407)
405 PRK14530 adenylate kinase; Pro 93.5 0.066 1.4E-06 50.8 3.4 24 180-203 4-27 (215)
406 cd00820 PEPCK_HprK Phosphoenol 93.5 0.067 1.4E-06 43.9 2.9 23 178-200 14-36 (107)
407 PRK10078 ribose 1,5-bisphospho 93.5 0.059 1.3E-06 49.8 3.0 24 180-203 3-26 (186)
408 PF08298 AAA_PrkA: PrkA AAA do 93.5 0.13 2.8E-06 51.5 5.4 46 158-203 61-112 (358)
409 COG1223 Predicted ATPase (AAA+ 93.5 0.09 2E-06 49.6 4.0 46 158-203 121-175 (368)
410 cd00464 SK Shikimate kinase (S 93.5 0.068 1.5E-06 47.5 3.3 22 182-203 2-23 (154)
411 PRK13695 putative NTPase; Prov 93.5 0.11 2.4E-06 47.4 4.7 35 181-217 2-36 (174)
412 PRK13975 thymidylate kinase; P 93.4 0.073 1.6E-06 49.7 3.6 24 180-203 3-26 (196)
413 PF03308 ArgK: ArgK protein; 93.4 0.21 4.5E-06 47.7 6.5 63 166-229 14-78 (266)
414 COG2019 AdkA Archaeal adenylat 93.4 0.067 1.4E-06 47.0 2.9 47 179-238 4-50 (189)
415 cd01672 TMPK Thymidine monopho 93.4 0.2 4.3E-06 46.7 6.5 24 180-203 1-24 (200)
416 KOG0727 26S proteasome regulat 93.4 0.14 3.1E-06 47.9 5.2 46 158-203 155-213 (408)
417 TIGR02640 gas_vesic_GvpN gas v 93.3 0.3 6.4E-06 47.9 7.7 57 164-228 8-64 (262)
418 TIGR02902 spore_lonB ATP-depen 93.2 0.12 2.7E-06 56.0 5.3 46 158-203 65-110 (531)
419 cd01130 VirB11-like_ATPase Typ 93.2 0.082 1.8E-06 48.9 3.4 107 166-280 13-119 (186)
420 PRK08927 fliI flagellum-specif 93.2 0.36 7.8E-06 50.4 8.3 90 178-272 157-259 (442)
421 PRK12339 2-phosphoglycerate ki 93.1 0.092 2E-06 48.8 3.7 25 179-203 3-27 (197)
422 PRK06851 hypothetical protein; 93.1 1.3 2.9E-05 45.2 12.2 44 176-221 211-254 (367)
423 cd01122 GP4d_helicase GP4d_hel 93.1 0.78 1.7E-05 45.2 10.6 53 178-234 29-81 (271)
424 PRK05057 aroK shikimate kinase 93.1 0.091 2E-06 47.8 3.5 25 179-203 4-28 (172)
425 PRK08149 ATP synthase SpaL; Va 93.1 0.43 9.4E-06 49.7 8.8 90 178-272 150-252 (428)
426 PRK14527 adenylate kinase; Pro 93.1 0.092 2E-06 48.8 3.6 26 178-203 5-30 (191)
427 cd01124 KaiC KaiC is a circadi 93.1 0.22 4.7E-06 45.9 6.1 44 182-230 2-45 (187)
428 TIGR01287 nifH nitrogenase iro 93.1 0.12 2.6E-06 51.2 4.6 39 180-221 1-39 (275)
429 PRK08972 fliI flagellum-specif 93.0 0.17 3.7E-06 52.5 5.7 90 178-272 161-263 (444)
430 COG1763 MobB Molybdopterin-gua 93.0 0.099 2.1E-06 46.5 3.5 25 179-203 2-26 (161)
431 PF00006 ATP-synt_ab: ATP synt 93.0 0.32 6.9E-06 45.8 7.1 87 178-271 14-115 (215)
432 PF03193 DUF258: Protein of un 93.0 0.13 2.8E-06 45.7 4.2 35 166-203 25-59 (161)
433 PF02374 ArsA_ATPase: Anion-tr 93.0 0.16 3.4E-06 50.9 5.2 46 180-228 2-47 (305)
434 PRK09280 F0F1 ATP synthase sub 93.0 0.43 9.2E-06 50.1 8.5 93 178-272 143-249 (463)
435 PF05970 PIF1: PIF1-like helic 93.0 0.3 6.6E-06 50.4 7.5 38 166-203 9-46 (364)
436 PF14516 AAA_35: AAA-like doma 92.9 1.9 4.2E-05 43.8 13.3 112 158-273 11-139 (331)
437 PF10443 RNA12: RNA12 protein; 92.9 0.41 8.8E-06 49.2 8.1 68 163-237 1-72 (431)
438 KOG0733 Nuclear AAA ATPase (VC 92.9 0.38 8.3E-06 51.1 8.0 72 178-272 544-615 (802)
439 cd00544 CobU Adenosylcobinamid 92.9 0.64 1.4E-05 42.0 8.6 80 182-270 2-82 (169)
440 TIGR01313 therm_gnt_kin carboh 92.9 0.074 1.6E-06 47.9 2.6 22 182-203 1-22 (163)
441 PF13086 AAA_11: AAA domain; P 92.8 0.32 6.9E-06 46.5 7.1 53 181-233 19-75 (236)
442 PRK06620 hypothetical protein; 92.8 0.086 1.9E-06 49.8 3.0 46 158-203 17-68 (214)
443 TIGR03498 FliI_clade3 flagella 92.8 0.21 4.6E-06 52.0 6.0 91 178-272 139-241 (418)
444 PRK05342 clpX ATP-dependent pr 92.7 0.16 3.5E-06 52.9 5.2 47 157-203 70-132 (412)
445 PF13604 AAA_30: AAA domain; P 92.7 0.22 4.8E-06 46.4 5.6 36 168-203 7-42 (196)
446 PRK13407 bchI magnesium chelat 92.7 0.18 3.9E-06 51.0 5.3 46 158-203 8-53 (334)
447 cd02117 NifH_like This family 92.7 0.1 2.3E-06 49.3 3.5 24 180-203 1-24 (212)
448 PF03029 ATP_bind_1: Conserved 92.7 0.15 3.3E-06 48.9 4.7 20 184-203 1-20 (238)
449 PRK13946 shikimate kinase; Pro 92.7 0.096 2.1E-06 48.3 3.2 25 179-203 10-34 (184)
450 PRK14493 putative bifunctional 92.7 0.17 3.7E-06 49.6 5.0 35 180-218 2-36 (274)
451 TIGR00455 apsK adenylylsulfate 92.7 0.51 1.1E-05 43.4 8.0 27 177-203 16-42 (184)
452 KOG0739 AAA+-type ATPase [Post 92.6 10 0.00022 37.0 16.3 90 158-271 133-235 (439)
453 COG0194 Gmk Guanylate kinase [ 92.6 0.11 2.4E-06 46.8 3.2 25 179-203 4-28 (191)
454 COG0714 MoxR-like ATPases [Gen 92.6 0.39 8.4E-06 48.9 7.8 67 158-232 24-90 (329)
455 PRK04182 cytidylate kinase; Pr 92.6 0.1 2.2E-06 47.9 3.2 23 181-203 2-24 (180)
456 PRK13236 nitrogenase reductase 92.6 0.098 2.1E-06 52.3 3.3 28 176-203 3-30 (296)
457 smart00534 MUTSac ATPase domai 92.6 0.054 1.2E-06 50.0 1.3 22 181-202 1-22 (185)
458 PRK13948 shikimate kinase; Pro 92.6 0.12 2.6E-06 47.3 3.5 26 178-203 9-34 (182)
459 PRK13768 GTPase; Provisional 92.6 0.2 4.3E-06 48.8 5.2 24 180-203 3-26 (253)
460 PRK14737 gmk guanylate kinase; 92.5 0.11 2.5E-06 47.8 3.4 26 178-203 3-28 (186)
461 PRK06761 hypothetical protein; 92.5 0.14 3.1E-06 50.1 4.2 24 180-203 4-27 (282)
462 cd03282 ABC_MSH4_euk MutS4 hom 92.5 0.079 1.7E-06 49.6 2.3 120 178-306 28-157 (204)
463 PLN02200 adenylate kinase fami 92.5 0.13 2.7E-06 49.4 3.8 26 178-203 42-67 (234)
464 PF00005 ABC_tran: ABC transpo 92.5 0.092 2E-06 45.6 2.6 26 178-203 10-35 (137)
465 cd03116 MobB Molybdenum is an 92.5 0.13 2.9E-06 45.9 3.7 24 180-203 2-25 (159)
466 PF13521 AAA_28: AAA domain; P 92.5 0.11 2.4E-06 46.7 3.2 21 182-202 2-22 (163)
467 cd01878 HflX HflX subfamily. 92.5 0.37 8E-06 45.2 6.9 26 178-203 40-65 (204)
468 PRK14738 gmk guanylate kinase; 92.5 0.11 2.4E-06 48.8 3.3 25 178-202 12-36 (206)
469 PLN02796 D-glycerate 3-kinase 92.5 0.31 6.6E-06 49.0 6.5 26 178-203 99-124 (347)
470 PRK05922 type III secretion sy 92.4 0.3 6.5E-06 50.9 6.6 91 177-272 155-258 (434)
471 KOG0738 AAA+-type ATPase [Post 92.4 0.19 4.2E-06 50.2 4.8 45 159-203 213-269 (491)
472 PF03215 Rad17: Rad17 cell cyc 92.4 0.25 5.4E-06 53.1 6.1 53 160-217 21-78 (519)
473 COG1116 TauB ABC-type nitrate/ 92.4 0.11 2.4E-06 49.1 3.0 26 178-203 28-53 (248)
474 TIGR03305 alt_F1F0_F1_bet alte 92.4 0.42 9.1E-06 50.0 7.6 93 178-272 137-243 (449)
475 PLN02165 adenylate isopentenyl 92.4 0.2 4.3E-06 50.1 5.0 29 175-203 39-67 (334)
476 PRK09825 idnK D-gluconate kina 92.4 0.12 2.6E-06 47.2 3.2 24 180-203 4-27 (176)
477 COG1703 ArgK Putative periplas 92.4 0.31 6.6E-06 47.3 6.0 62 168-230 38-101 (323)
478 cd01983 Fer4_NifH The Fer4_Nif 92.4 0.12 2.6E-06 41.5 3.0 23 181-203 1-23 (99)
479 cd03114 ArgK-like The function 92.3 0.2 4.4E-06 44.2 4.6 23 181-203 1-23 (148)
480 cd01136 ATPase_flagellum-secre 92.3 0.54 1.2E-05 47.2 8.1 90 178-272 68-170 (326)
481 KOG3864 Uncharacterized conser 92.3 0.038 8.3E-07 50.1 -0.0 83 361-459 103-185 (221)
482 PRK09112 DNA polymerase III su 92.3 0.25 5.4E-06 50.5 5.8 46 158-203 23-69 (351)
483 PRK08154 anaerobic benzoate ca 92.3 0.21 4.6E-06 50.2 5.2 26 178-203 132-157 (309)
484 TIGR03375 type_I_sec_LssB type 92.3 0.29 6.4E-06 55.5 7.0 26 178-203 490-515 (694)
485 PRK13230 nitrogenase reductase 92.3 0.12 2.7E-06 51.2 3.5 24 180-203 2-25 (279)
486 TIGR00041 DTMP_kinase thymidyl 92.3 0.38 8.2E-06 44.7 6.6 24 180-203 4-27 (195)
487 PRK13232 nifH nitrogenase redu 92.3 0.11 2.4E-06 51.4 3.1 24 180-203 2-25 (273)
488 TIGR01039 atpD ATP synthase, F 92.2 0.64 1.4E-05 48.6 8.7 93 178-272 142-248 (461)
489 PF01078 Mg_chelatase: Magnesi 92.2 0.28 6E-06 45.4 5.4 44 158-203 3-46 (206)
490 COG1224 TIP49 DNA helicase TIP 92.2 0.34 7.4E-06 48.0 6.2 53 157-210 38-95 (450)
491 PF10923 DUF2791: P-loop Domai 92.2 2.1 4.5E-05 44.5 12.2 78 159-239 26-113 (416)
492 TIGR02173 cyt_kin_arch cytidyl 92.2 0.13 2.8E-06 46.7 3.2 23 181-203 2-24 (171)
493 PLN02348 phosphoribulokinase 92.1 0.16 3.4E-06 51.8 4.0 27 177-203 47-73 (395)
494 PF14532 Sigma54_activ_2: Sigm 92.1 0.13 2.8E-06 44.9 3.0 43 161-203 1-45 (138)
495 TIGR01040 V-ATPase_V1_B V-type 92.1 0.67 1.5E-05 48.4 8.5 94 178-272 140-258 (466)
496 COG1100 GTPase SAR1 and relate 92.0 0.1 2.2E-06 49.6 2.5 24 180-203 6-29 (219)
497 COG0488 Uup ATPase components 92.0 0.42 9.1E-06 51.5 7.4 57 249-308 159-218 (530)
498 PRK03731 aroL shikimate kinase 92.0 0.14 3.1E-06 46.5 3.4 24 180-203 3-26 (171)
499 cd01132 F1_ATPase_alpha F1 ATP 92.0 0.75 1.6E-05 44.7 8.4 97 178-279 68-180 (274)
500 TIGR03574 selen_PSTK L-seryl-t 92.0 0.12 2.6E-06 50.3 3.0 22 182-203 2-23 (249)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-56 Score=493.67 Aligned_cols=590 Identities=36% Similarity=0.562 Sum_probs=457.7
Q ss_pred CCcceeeeechhhHhhHHHHHhhhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Q 006902 1 MCSIFQITCDGALFNRCLDCFLGKAAYIRNLQDNLVALETELGRLIAAKNDVMMRVVNAERQQMRRLDGVQVWVSRVDSV 80 (626)
Q Consensus 1 m~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~ 80 (626)
|+++++.. ++++.+.+.+++..+.+.++++..|+++|..|+.+++| |+.++.. ...+..|.+.++++
T Consensus 1 ~~~~~s~~-----~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~~-~~~~~~~~e~~~~~ 67 (889)
T KOG4658|consen 1 MGACVSFG-----VEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKRDD-LERRVNWEEDVGDL 67 (889)
T ss_pred CCeEEEEe-----hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcch-HHHHHHHHHHHHHH
Confidence 45545543 45567888999999999999999999999999999999 6666654 37788999999999
Q ss_pred HHHHHHHHhhhhhhhcc----------------ccccCccccCccccchHHHHHHHHHHHHHHHHHcCCccccccccCCC
Q 006902 81 KTGADELITDGSEEIGK----------------LCVGGYCSKNCRSSYKFGKQVARKLRHVETLIAEGVFEAVATEVVPE 144 (626)
Q Consensus 81 ~~d~ed~ld~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 144 (626)
+|+++|+++.|..+... .|..++|.+.+...+.+++++.++++.++.+..+..|..++..
T Consensus 68 ~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~---- 143 (889)
T KOG4658|consen 68 VYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES---- 143 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc----
Confidence 99999999998875432 2344666677777788889999999999988877767666521
Q ss_pred CCCCCCCCCCCCCCcc-cchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccC
Q 006902 145 RAPEPVADKRPIEPTI-VGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELR 223 (626)
Q Consensus 145 ~~~~~~~~~~~~~~~~-vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 223 (626)
..+...+...|..+.. ||.+..++++++.|.+++..+++|+||||+||||||++++|+...++++||.++||+||+.++
T Consensus 144 ~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~ 223 (889)
T KOG4658|consen 144 LDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFT 223 (889)
T ss_pred ccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccccc
Confidence 1122223333333333 999999999999999998899999999999999999999999933999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHH
Q 006902 224 LEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVC 303 (626)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va 303 (626)
...++++|++.++.....+......+.+..+.+.|.+|||++|+||||+..+|+.++.++| ...+||||++|||++.||
T Consensus 224 ~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p-~~~~g~KvvlTTRs~~V~ 302 (889)
T KOG4658|consen 224 TRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP-SRENGSKVVLTTRSEEVC 302 (889)
T ss_pred HHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC-CccCCeEEEEEeccHhhh
Confidence 9999999999999877666666668999999999999999999999999999999999999 888899999999999999
Q ss_pred hh-hccc-------------------------------------------------------------------------
Q 006902 304 GS-MEKL------------------------------------------------------------------------- 309 (626)
Q Consensus 304 ~~-~~~v------------------------------------------------------------------------- 309 (626)
.. +++.
T Consensus 303 ~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l 382 (889)
T KOG4658|consen 303 GRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVL 382 (889)
T ss_pred hccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccc
Confidence 98 6641
Q ss_pred --------------------------------------------------------------------------------
Q 006902 310 -------------------------------------------------------------------------------- 309 (626)
Q Consensus 310 -------------------------------------------------------------------------------- 309 (626)
T Consensus 383 ~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~ 462 (889)
T KOG4658|consen 383 KSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEE 462 (889)
T ss_pred cccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHH
Confidence
Q ss_pred ---------------------C----------------------------------------------------------
Q 006902 310 ---------------------G---------------------------------------------------------- 310 (626)
Q Consensus 310 ---------------------H---------------------------------------------------------- 310 (626)
|
T Consensus 463 LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~ 542 (889)
T KOG4658|consen 463 LVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS 542 (889)
T ss_pred HHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCC
Confidence 0
Q ss_pred ----------------------------Ccccccccccc-cccccchHHhhhcccchhcccCCCCccccchhhhcCCCcc
Q 006902 311 ----------------------------SSLELLDISHT-YIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRL 361 (626)
Q Consensus 311 ----------------------------~~Lr~L~L~~~-~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L 361 (626)
++|++|||++| .+.+||++|+.|.|||||+++++ .++.+|.+ +.+|.+|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~-l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSG-LGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchH-HHHHHhh
Confidence 48999999987 67899999999999999999999 69999999 9999999
Q ss_pred cEEEccCCCCCcccCCCCcc---c---------ccCCccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEE
Q 006902 362 RVLRMLGTGPFSFDEAPEDS---V---------LFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSL 429 (626)
Q Consensus 362 ~~L~l~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L 429 (626)
++|++..+...... +.... + ....+.....++.+|.+|+.+.+...+...++.+.....+.+..+.+
T Consensus 621 ~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 621 IYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred heeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhh
Confidence 99999987643221 11000 0 11234556667777777777777655553344444444444444555
Q ss_pred EEeccCCCccccccccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccccccCCCc
Q 006902 430 FLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNL 509 (626)
Q Consensus 430 ~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L 509 (626)
.+.++.... ...++..+.+|+.|.|.+|...+.. ..|.... .....|++|..+.+.+|....++.|....|+|
T Consensus 700 ~~~~~~~~~---~~~~~~~l~~L~~L~i~~~~~~e~~-~~~~~~~---~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L 772 (889)
T KOG4658|consen 700 SIEGCSKRT---LISSLGSLGNLEELSILDCGISEIV-IEWEESL---IVLLCFPNLSKVSILNCHMLRDLTWLLFAPHL 772 (889)
T ss_pred hhcccccce---eecccccccCcceEEEEcCCCchhh-ccccccc---chhhhHHHHHHHHhhccccccccchhhccCcc
Confidence 554422211 2347788999999999999887532 3343210 00013678999999999999999999999999
Q ss_pred cEEEEeccCccccccccCccccccccCCCCCcCCcccee-ecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCC
Q 006902 510 KSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQML-HLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSN 588 (626)
Q Consensus 510 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L-~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~ 588 (626)
+.|.+..|..++++++....-.. .......|.++..+ .+.+.+.+.++......+++|+.+.+..||+++.+|....
T Consensus 773 ~~l~l~~~~~~e~~i~~~k~~~~--l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~ 850 (889)
T KOG4658|consen 773 TSLSLVSCRLLEDIIPKLKALLE--LKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLST 850 (889)
T ss_pred cEEEEecccccccCCCHHHHhhh--cccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccc
Confidence 99999999999988764322111 11124567777777 5888888888888888899999999999999999999876
Q ss_pred cCcCc---ceEEecccccccccccccccccccccC
Q 006902 589 SAKER---KVVIRGDTQWWNRLQWEDEATQIAFRS 620 (626)
Q Consensus 589 ~~l~~---l~~~~~~~~~~~~l~~~~~~~~~~~~~ 620 (626)
..... ......+.+|-++++|++.+++..+.+
T Consensus 851 ~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 885 (889)
T KOG4658|consen 851 LTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRFWK 885 (889)
T ss_pred cceeccccceeecCCccceeeEEehhhhhhhhcch
Confidence 63333 233344566888899999998887733
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.4e-35 Score=342.07 Aligned_cols=141 Identities=18% Similarity=0.268 Sum_probs=106.3
Q ss_pred CcccchHHHHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEe---cCc-----------
Q 006902 158 PTIVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVV---SKE----------- 221 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~---s~~----------- 221 (626)
+.+|||+..++++.++|.- ++.++|+||||||+||||||+++|+.. ..+|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 5689999999999998853 478999999999999999999999977 689999888752 111
Q ss_pred cC-HHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCCh
Q 006902 222 LR-LEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFI 300 (626)
Q Consensus 222 ~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~ 300 (626)
++ ...++++++..+..... ..... ...+++.+++||+||||||||+...|+.+..... +.+.||+||||||+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~-~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ-WFGSGSRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc-cCCCCcEEEEEeCcH
Confidence 01 12344555554422211 01111 1457788999999999999999999998876665 667899999999999
Q ss_pred HHHhhhc
Q 006902 301 DVCGSME 307 (626)
Q Consensus 301 ~va~~~~ 307 (626)
.++..++
T Consensus 335 ~vl~~~~ 341 (1153)
T PLN03210 335 HFLRAHG 341 (1153)
T ss_pred HHHHhcC
Confidence 9987654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.88 E-value=2e-22 Score=202.04 Aligned_cols=143 Identities=36% Similarity=0.601 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCC
Q 006902 163 LQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDD 240 (626)
Q Consensus 163 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~ 240 (626)
||.++++|.++|.+ ++.++|+|+||||+||||||+.++++. .++.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999998 789999999999999999999999997 579999999999999999999999999999988754
Q ss_pred cc-CCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHHhhhc
Q 006902 241 SW-KNKSFEEKAVDILRRLGEKRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVCGSME 307 (626)
Q Consensus 241 ~~-~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va~~~~ 307 (626)
.. ...+.+.....+.+.+.++++|+||||||+...|+.+...++ ....|++||||||+..++..++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~-~~~~~~kilvTTR~~~v~~~~~ 146 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP-SFSSGSKILVTTRDRSVAGSLG 146 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H-CHHSS-EEEEEESCGGGGTTHH
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccc-cccccccccccccccccccccc
Confidence 33 456778899999999999999999999999999999988887 7777999999999999987664
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.65 E-value=3.9e-16 Score=183.39 Aligned_cols=241 Identities=22% Similarity=0.283 Sum_probs=153.6
Q ss_pred Ccccccccccc-cccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHT-YIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~-~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.+|++|+|+++ .+..+|. ++.+.+|++|++++|..+..+|.+ |.+|++|+.|++.+|.... .
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~---------------~ 696 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLE---------------I 696 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcC---------------c
Confidence 47888888876 4677774 777888888888888778888887 8888888888888875321 1
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccc--------------------------c
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVD--------------------------A 443 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------------~ 443 (626)
.|..+ ++++|+.|.+..+.. +..++. ..++|+.|++.++... .++. .
T Consensus 697 Lp~~i-~l~sL~~L~Lsgc~~--L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 697 LPTGI-NLKSLYRLNLSGCSR--LKSFPD---ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred cCCcC-CCCCCCEEeCCCCCC--cccccc---ccCCcCeeecCCCccc-cccccccccccccccccccchhhcccccccc
Confidence 11111 455555555443321 111111 1223444444333211 0000 0
Q ss_pred c--cccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccc
Q 006902 444 T--AFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAME 521 (626)
Q Consensus 444 ~--~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~ 521 (626)
. ....+++|+.|.+++|..+..+ |.++. .+++|+.|+|++|..++.+|...++++|+.|+|++|..+.
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~l-P~si~---------~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVEL-PSSIQ---------NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR 839 (1153)
T ss_pred chhhhhccccchheeCCCCCCcccc-Chhhh---------CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc
Confidence 0 0112356777777777666553 34443 6788888888888878777765577888888888887766
Q ss_pred cccccCcc--------ccccccCCCCCcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCC
Q 006902 522 EIISVGKI--------AETPEMMGHISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPL 585 (626)
Q Consensus 522 ~i~~~~~~--------~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~ 585 (626)
.++..... ...++++..+..+++|++|++.+|++++.++.....+++|+.+++.+|++|+.++.
T Consensus 840 ~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 840 TFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 55431100 00112333567789999999999999999998888899999999999999987654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.64 E-value=3.5e-16 Score=183.35 Aligned_cols=246 Identities=21% Similarity=0.201 Sum_probs=119.3
Q ss_pred ccccccccccccc-ccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCccc--------
Q 006902 312 SLELLDISHTYIQ-ELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSV-------- 382 (626)
Q Consensus 312 ~Lr~L~L~~~~i~-~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~-------- 382 (626)
+|++|+|++|.+. .+|..++++.+|++|++++|.....+|.. ++++++|++|++.+|.+.+. .|..+.+
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIY 218 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEEE
Confidence 4555555555554 45555555556666666555322345554 55555566665555543210 0000000
Q ss_pred ccC--CccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeeccc
Q 006902 383 LFG--GGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRG 460 (626)
Q Consensus 383 ~~~--~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 460 (626)
+.+ -....+..++++++|+.|++..+...+ .++.....+++|+.|++.++...... ...+..+++|+.|++++|
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG--PIPSSLGNLKNLQYLFLYQNKLSGPI--PPSIFSLQKLISLDLSDN 294 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceecc--ccChhHhCCCCCCEEECcCCeeeccC--chhHhhccCcCEEECcCC
Confidence 000 011233445555555555554333211 11122222445555555544322111 113444555555555544
Q ss_pred CCcceEeeccccccccccCccccCccCEEEEeCCCCCcccc-ccccCCCccEEEEeccCccccccccCccccccccCCCC
Q 006902 461 FELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHI 539 (626)
Q Consensus 461 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~ 539 (626)
..... .|.++. .+++|+.|++++|.....+| .++.+++|+.|+|++|.....++. .+
T Consensus 295 ~l~~~-~p~~~~---------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~------------~l 352 (968)
T PLN00113 295 SLSGE-IPELVI---------QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK------------NL 352 (968)
T ss_pred eeccC-CChhHc---------CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh------------HH
Confidence 32221 233333 55666666666654444444 356666666666666543333332 34
Q ss_pred CcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCC
Q 006902 540 SPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPL 585 (626)
Q Consensus 540 ~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~ 585 (626)
+.+++|+.|+++++.....++.....+++|+.|.+.+|+-...+|.
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence 5567777777776654445555555667777777777654444554
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.62 E-value=1e-15 Score=179.42 Aligned_cols=259 Identities=18% Similarity=0.087 Sum_probs=167.7
Q ss_pred ccccccccccccc-ccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCccc--------
Q 006902 312 SLELLDISHTYIQ-ELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSV-------- 382 (626)
Q Consensus 312 ~Lr~L~L~~~~i~-~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~-------- 382 (626)
+|++|+|++|.+. .+|..++++.+|++|++++|.....+|.+ ++++++|++|++.+|.+.+ ..|..+.+
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCC-cCChhHhcCCCCCEEE
Confidence 4555555555543 45555555555555555555322344554 5555555555555554332 11111100
Q ss_pred ccCC--ccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeeccc
Q 006902 383 LFGG--GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRG 460 (626)
Q Consensus 383 ~~~~--~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 460 (626)
+.++ ....+..++++++|+.|.+..+...+ .++.....+++|+.|++.++.....+ ...+..+++|+.|++.++
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNSLSGEI--PELVIQLQNLEILHLFSN 318 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeec--cCchhHhhccCcCEEECcCCeeccCC--ChhHcCCCCCcEEECCCC
Confidence 1111 23566789999999999987654432 12222334678999999987643222 124678899999999987
Q ss_pred CCcceEeeccccccccccCccccCccCEEEEeCCCCCcccc-ccccCCCccEEEEeccCccccccccCccccccccCCCC
Q 006902 461 FELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHI 539 (626)
Q Consensus 461 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~ 539 (626)
..... .+.++. .+++|+.|++++|.....+| .++.+++|+.|++++|.....++. .+
T Consensus 319 ~~~~~-~~~~~~---------~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~------------~~ 376 (968)
T PLN00113 319 NFTGK-IPVALT---------SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE------------GL 376 (968)
T ss_pred ccCCc-CChhHh---------cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh------------hH
Confidence 65543 345554 78999999999987666677 489999999999998855444443 45
Q ss_pred CcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEec
Q 006902 540 SPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRG 599 (626)
Q Consensus 540 ~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~ 599 (626)
..+++|+.|++.++.-...++.....+++|+.|++.+|.--..+|..... ++.|+..+.
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L 435 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFLDI 435 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc-CCCCCEEEC
Confidence 66789999999998766677777788999999999999655556654433 455555543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=9.8e-17 Score=162.62 Aligned_cols=242 Identities=19% Similarity=0.177 Sum_probs=150.9
Q ss_pred cccccccccccccccchHH-hhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELPEEL-KLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i-~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
++-+|+||+|+|+.+|..+ -+|..|-||||+.| .++.+|+. +.+|.+||+|++++|...- ..
T Consensus 127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~h---------------fQ 189 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNH---------------FQ 189 (1255)
T ss_pred CcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhH---------------HH
Confidence 5667999999999999664 68999999999999 69999998 9999999999999987532 34
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
+..|..++.|++|+++.... .+..++.++.-+.+|..++++.+.-... ..++.++++|+.|+++++.. +++.. .
T Consensus 190 LrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~Lp~v---Pecly~l~~LrrLNLS~N~i-teL~~-~ 263 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNLPIV---PECLYKLRNLRRLNLSGNKI-TELNM-T 263 (1255)
T ss_pred HhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCCCcc---hHHHhhhhhhheeccCcCce-eeeec-c
Confidence 55566777777777764332 3345556666677888888876643211 24778888999999987543 33311 1
Q ss_pred ccccccccCccccCccCEEEEeCCCCCccccc-cccCCCccEEEEeccCc-ccccccc-C-------cc---ccccccCC
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF-LVFAPNLKSLTLFDCGA-MEEIISV-G-------KI---AETPEMMG 537 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~L~~L~~L~L~~~~~-l~~i~~~-~-------~~---~~~~~~~~ 537 (626)
.. .-.+|++|+++. +.++.+|. +.+|+.|+.|.+.++.. .+.+|.. + |. ...+-++.
T Consensus 264 ~~---------~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE 333 (1255)
T KOG0444|consen 264 EG---------EWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE 333 (1255)
T ss_pred HH---------HHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCch
Confidence 11 335666666666 35555553 55666666665544321 1111110 0 00 00001112
Q ss_pred CCCcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCC
Q 006902 538 HISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSN 588 (626)
Q Consensus 538 ~~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~ 588 (626)
.+..|++|+.|.|.+ +.|-.+|..+.-+|.|+.|+++..|+|. .|..+.
T Consensus 334 glcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV-MPPKP~ 382 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV-MPPKPN 382 (1255)
T ss_pred hhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCcc-CCCCcc
Confidence 445566666666653 5566666666666667777777666666 344343
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.46 E-value=1.4e-15 Score=154.44 Aligned_cols=249 Identities=19% Similarity=0.212 Sum_probs=184.2
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
.|..||||+|.+.+.|..+..-+++-.|+|+.| .|+.||.+++.+|..|-.|++++|... ..|
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe----------------~LP 166 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLE----------------MLP 166 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhh----------------hcC
Confidence 677899999999999999999999999999999 699999998889999999999999854 577
Q ss_pred HHhhccCCCceEEEEEechhh--HHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeec
Q 006902 392 QELLGLKYLEVLELTLGSYHA--LQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKID 469 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~ 469 (626)
..+..|.+|++|.++.+.... +++++. +++|+.|.+++....-.- -..++..+.||..+.++. .++..+ |+
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs----mtsL~vLhms~TqRTl~N-~Ptsld~l~NL~dvDlS~-N~Lp~v-Pe 239 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPS----MTSLSVLHMSNTQRTLDN-IPTSLDDLHNLRDVDLSE-NNLPIV-PE 239 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCcc----chhhhhhhcccccchhhc-CCCchhhhhhhhhccccc-cCCCcc-hH
Confidence 889999999999988665433 333433 677888888876543211 123677888999999984 445443 44
Q ss_pred cccccccccCccccCccCEEEEeCCCCCccccc-cccCCCccEEEEeccCccccccccC-------------cccccccc
Q 006902 470 YTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF-LVFAPNLKSLTLFDCGAMEEIISVG-------------KIAETPEM 535 (626)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~-------------~~~~~~~~ 535 (626)
-.- .+++|+.|+|+++ .++.+.. .+.-.+|+.|+++.+ .+..+|... .--.-+++
T Consensus 240 cly---------~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 240 CLY---------KLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred HHh---------hhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCC
Confidence 443 6899999999994 7777763 778899999999987 455454311 00011244
Q ss_pred CCCCCcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEe
Q 006902 536 MGHISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIR 598 (626)
Q Consensus 536 ~~~~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~ 598 (626)
++.+|.+..|+.+...+ ++|+-.|.+...|+.|+.|.+ +|..|-+||.++.- ++.|++.+
T Consensus 309 PSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIHl-L~~l~vLD 368 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIHL-LPDLKVLD 368 (1255)
T ss_pred ccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcc-cccceeechhhhhh-cCCcceee
Confidence 45666666777777665 567777777778889999988 67889999998854 66666655
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.41 E-value=3.1e-14 Score=143.88 Aligned_cols=232 Identities=16% Similarity=0.161 Sum_probs=109.0
Q ss_pred cccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
++++|+|++|.|+.+- ..+..|.+|.+|.|+.| .++.+|.-++.+|++|+.|++..|.+...+
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive--------------- 237 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVE--------------- 237 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeeh---------------
Confidence 4555555555555443 34455555555555555 455555543444555555555555432110
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
...+..|.+|+.|.+..++...++.- ....+.+++.|+|..+.-. .+ .-..+.+++.|+.|+++. ..+..+.++.
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG--~Fy~l~kme~l~L~~N~l~-~v-n~g~lfgLt~L~~L~lS~-NaI~rih~d~ 312 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDG--AFYGLEKMEHLNLETNRLQ-AV-NEGWLFGLTSLEQLDLSY-NAIQRIHIDS 312 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCc--ceeeecccceeecccchhh-hh-hcccccccchhhhhccch-hhhheeecch
Confidence 11123333333333333322222110 1112455666666544321 11 112456667777777764 3333333332
Q ss_pred ccccccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccCcccc----------------c
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAE----------------T 532 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~----------------~ 532 (626)
.. ..++|+.|+|+++ .++.++. +..|..|+.|.|+++ .+..+....|.+- .
T Consensus 313 Ws---------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 313 WS---------FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hh---------hcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 22 4566666766663 5555542 445555555555544 3333332211100 0
Q ss_pred cccCCCCCcCCccceeecCCccccccccCC-CCCCCCccEEEecC
Q 006902 533 PEMMGHISPFENLQMLHLSYLPILKSIYWK-PLPFTHLKEMEVSG 576 (626)
Q Consensus 533 ~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~-~~~lp~L~~L~i~~ 576 (626)
+.-.....++|+|++|.|.+ ++++.|+.. +..+++|+.|++.+
T Consensus 382 EDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred ecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC
Confidence 00011344566677777666 466666643 34466666666665
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.23 E-value=1.9e-12 Score=131.23 Aligned_cols=245 Identities=23% Similarity=0.250 Sum_probs=156.4
Q ss_pred Ccccccccccccccccch-HHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCC--Cccc-----
Q 006902 311 SSLELLDISHTYIQELPE-ELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAP--EDSV----- 382 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~--~~~~----- 382 (626)
+.|-.|.|+.|+++.||. .+++|.+|+.|+|..| .++.+-...+..|++|+.|.+..|.+..+.-.. +..+
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 467788888888888885 4566888888888887 466554333667777777777766554321111 0000
Q ss_pred ccCC--ccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeeccc
Q 006902 383 LFGG--GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRG 460 (626)
Q Consensus 383 ~~~~--~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 460 (626)
+.-+ ..-.-..+.+|+.|+.|+++.+....+. .....+..+|+.|+|+.+... .+ +..++..++.|++|+++.+
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~N~i~-~l-~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSSNRIT-RL-DEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheee--cchhhhcccceeEeccccccc-cC-ChhHHHHHHHhhhhccccc
Confidence 0000 0011123567777888877766554432 122344778999999876543 33 3457888889999999864
Q ss_pred CCcceEeeccccccccccCccccCccCEEEEeCCCCCcccc----ccccCCCccEEEEeccCccccccccCccccccccC
Q 006902 461 FELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST----FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMM 536 (626)
Q Consensus 461 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~----~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~ 536 (626)
.+..+-...+. .+++|++|+|+.+...-.+. ++..||.|+.|.+.++ .++.|+..
T Consensus 352 -si~~l~e~af~---------~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~kr---------- 410 (873)
T KOG4194|consen 352 -SIDHLAEGAFV---------GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKR---------- 410 (873)
T ss_pred -chHHHHhhHHH---------HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchh----------
Confidence 34333222333 67899999998753322222 3567999999999987 78888875
Q ss_pred CCCCcCCccceeecCCccccccccCC-CCCCCCccEEEec------CCCCCCCCCC
Q 006902 537 GHISPFENLQMLHLSYLPILKSIYWK-PLPFTHLKEMEVS------GCNQLEKHPL 585 (626)
Q Consensus 537 ~~~~~fp~L~~L~l~~~~~l~~i~~~-~~~lp~L~~L~i~------~C~~L~~lP~ 585 (626)
.+.+|++|+.|+|.+. -+.+|... +..| .|++|.+. +| .|+.++.
T Consensus 411 -Afsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nSssflCDC-ql~Wl~q 462 (873)
T KOG4194|consen 411 -AFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNSSSFLCDC-QLKWLAQ 462 (873)
T ss_pred -hhccCcccceecCCCC-cceeecccccccc-hhhhhhhcccceEEec-cHHHHHH
Confidence 4578999999999884 45555543 4445 78887664 46 6666664
No 11
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.21 E-value=1e-11 Score=139.08 Aligned_cols=252 Identities=25% Similarity=0.304 Sum_probs=165.1
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCc--ccCCC--Cccc-----
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFS--FDEAP--EDSV----- 382 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~--~~~~~--~~~~----- 382 (626)
|||||+|+++.+..||..+++|+.|.|||+..+..+..+|.- +..|++|++|.+....... ..+.. ....
T Consensus 596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhhcccccCCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 899999999999999999999999999999999877777653 6679999999999865110 00000 0000
Q ss_pred ccCCccchhHHhhccCCCceEEEEEe-chhhHHHHhhccccccceeEEEEeccCCCcccccc-cccc---ccccccceee
Q 006902 383 LFGGGEVLIQELLGLKYLEVLELTLG-SYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDA-TAFA---DLNHLNELWI 457 (626)
Q Consensus 383 ~~~~~~~~~~~l~~L~~L~~L~i~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~l~---~~~~L~~L~l 457 (626)
...........+..++.|..+.+... ..............+.+|+.|.+.+|...+....+ .... ..++|..+.+
T Consensus 675 ~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 675 ITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred eecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 11111122334444444443322111 11222334444556789999999999875332111 1111 1457778888
Q ss_pred cccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccc-cccCCCccEEEEeccCccccccccCccccccccC
Q 006902 458 YRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF-LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMM 536 (626)
Q Consensus 458 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~ 536 (626)
..|...+ .+.|.. ..|+|+.|.+..|..+.++.+ ...+..++.+.+..+ ...... +.
T Consensus 755 ~~~~~~r--~l~~~~---------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~----------~~ 812 (889)
T KOG4658|consen 755 LNCHMLR--DLTWLL---------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLR----------ML 812 (889)
T ss_pred hcccccc--ccchhh---------ccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccce----------ee
Confidence 8888887 567765 679999999999999888764 566666666444432 233221 01
Q ss_pred CCCCcCCccceeecCCccccccccCCC----CCCCCccEEEecCC-CCCCCCCCCC
Q 006902 537 GHISPFENLQMLHLSYLPILKSIYWKP----LPFTHLKEMEVSGC-NQLEKHPLDS 587 (626)
Q Consensus 537 ~~~~~fp~L~~L~l~~~~~l~~i~~~~----~~lp~L~~L~i~~C-~~L~~lP~~~ 587 (626)
...++||++..+.+.+.. |.+|..+. +.||.+.++.+.+| +++..+|.+.
T Consensus 813 ~~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~ 867 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGE 867 (889)
T ss_pred ecCCCCceeEecccCccc-hhheehhcCcccccCccccccceeccccceeecCCcc
Confidence 145677777777777643 77766655 77999999999997 9999999874
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.10 E-value=8.5e-13 Score=127.96 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=47.0
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCC
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 372 (626)
.+.+|++.++...++|.+|+.+..++.|+.+++ ++..+|+. |..+.+|.+|++..+.+.
T Consensus 69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~-i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQ-IGSLISLVKLDCSSNELK 127 (565)
T ss_pred ceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHH-Hhhhhhhhhhhcccccee
Confidence 456777888888888888888888888888888 57888887 888888888888877654
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.08 E-value=1.3e-11 Score=119.81 Aligned_cols=253 Identities=15% Similarity=0.152 Sum_probs=144.4
Q ss_pred CcccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCC------------
Q 006902 311 SSLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAP------------ 378 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~------------ 378 (626)
+++.+|||+.|.++++|+.+..|++|.+||++.| .++.+|.+ +++| +|+.|.+.|+....++-..
T Consensus 252 ~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL 328 (565)
T ss_pred ccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence 6889999999999999999999999999999999 58999998 9999 9999999988643221000
Q ss_pred -------Cccc-------ccCCccchhHHhhccCCCceEEEEEechhhHHH-HhhccccccceeEEEEeccCCCcccccc
Q 006902 379 -------EDSV-------LFGGGEVLIQELLGLKYLEVLELTLGSYHALQI-LLSSNKLKSCIRSLFLWLAGDATSIVDA 443 (626)
Q Consensus 379 -------~~~~-------~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 443 (626)
+... ..............+.+.+.|.++....+.+.. ++.. ....-....+++.+.-.+-.
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea-~~~~~Vt~VnfskNqL~elP--- 404 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEA-AKSEIVTSVNFSKNQLCELP--- 404 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHH-hhhcceEEEecccchHhhhh---
Confidence 0000 000011122233334444444433322211111 1110 00112333333333211100
Q ss_pred ccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccc-cccCCCccEEEEeccCcccc
Q 006902 444 TAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF-LVFAPNLKSLTLFDCGAMEE 522 (626)
Q Consensus 444 ~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~L~~L~~L~L~~~~~l~~ 522 (626)
..+..+..+.+.-+.....+. ..+..+. .+++|..|++++ +.+.++|. ++++-.|+.|+|+.+ ....
T Consensus 405 k~L~~lkelvT~l~lsnn~is-fv~~~l~---------~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~ 472 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKIS-FVPLELS---------QLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN-RFRM 472 (565)
T ss_pred hhhHHHHHHHHHHHhhcCccc-cchHHHH---------hhhcceeeeccc-chhhhcchhhhhhhhhheeccccc-cccc
Confidence 011111222211111112221 1223333 678888888888 46777774 788888888888876 3333
Q ss_pred ccccCcc-----------ccccccC-CCCCcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCC
Q 006902 523 IISVGKI-----------AETPEMM-GHISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPL 585 (626)
Q Consensus 523 i~~~~~~-----------~~~~~~~-~~~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~ 585 (626)
+|..-+. ....++. ..++.+.+|.+|++.+ +.+..+|...++|.+|++|.++|-|- + .|.
T Consensus 473 lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf-r-~Pr 544 (565)
T KOG0472|consen 473 LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF-R-QPR 544 (565)
T ss_pred chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc-C-CCH
Confidence 4321100 0000111 2467889999999987 68999999999999999999999653 3 554
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.02 E-value=2.6e-10 Score=126.05 Aligned_cols=208 Identities=18% Similarity=0.183 Sum_probs=126.5
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+++.|+|++|.++.+|..+. .+|++|++++| .++.+|.+ +. .+|+.|++++|.+.. .+
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~-l~--~~L~~L~Ls~N~L~~----------------LP 257 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPAT-LP--DTIQEMELSINRITE----------------LP 257 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChh-hh--ccccEEECcCCccCc----------------CC
Confidence 56778888888888887664 47888888888 57888876 43 468888888887542 22
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
..+. .+|+.|.++.+....+ +.. ...+|+.|+++++.-. .++. .+ .++|+.|+++++. +..+ |..
T Consensus 258 ~~l~--s~L~~L~Ls~N~L~~L---P~~--l~~sL~~L~Ls~N~Lt-~LP~--~l--p~sL~~L~Ls~N~-Lt~L-P~~- 322 (754)
T PRK15370 258 ERLP--SALQSLDLFHNKISCL---PEN--LPEELRYLSVYDNSIR-TLPA--HL--PSGITHLNVQSNS-LTAL-PET- 322 (754)
T ss_pred hhHh--CCCCEEECcCCccCcc---ccc--cCCCCcEEECCCCccc-cCcc--cc--hhhHHHHHhcCCc-cccC-Ccc-
Confidence 2222 3677777765544332 221 2357888888776432 2211 11 2467777777643 2222 111
Q ss_pred cccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecC
Q 006902 472 EIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLS 551 (626)
Q Consensus 472 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~ 551 (626)
..++|+.|.+.+| .+..+|. .-.++|+.|+|++| .+..++. ...++|++|+++
T Consensus 323 ----------l~~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N-~L~~LP~--------------~lp~~L~~LdLs 375 (754)
T PRK15370 323 ----------LPPGLKTLEAGEN-ALTSLPA-SLPPELQVLDVSKN-QITVLPE--------------TLPPTITTLDVS 375 (754)
T ss_pred ----------ccccceeccccCC-ccccCCh-hhcCcccEEECCCC-CCCcCCh--------------hhcCCcCEEECC
Confidence 2357788888876 4555653 11367888888877 3444433 123678888888
Q ss_pred CccccccccCCCCCCCCccEEEecCCCCCCCCCCCC
Q 006902 552 YLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDS 587 (626)
Q Consensus 552 ~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 587 (626)
+| .+..+|... .++|+.|++++| +|..+|..+
T Consensus 376 ~N-~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~sl 407 (754)
T PRK15370 376 RN-ALTNLPENL--PAALQIMQASRN-NLVRLPESL 407 (754)
T ss_pred CC-cCCCCCHhH--HHHHHHHhhccC-CcccCchhH
Confidence 75 566666432 246778888775 677777654
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.01 E-value=2.9e-10 Score=125.63 Aligned_cols=230 Identities=18% Similarity=0.195 Sum_probs=156.2
Q ss_pred cCChHHHhhhcccCCcccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccC
Q 006902 297 TRFIDVCGSMEKLGSSLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDE 376 (626)
Q Consensus 297 tr~~~va~~~~~vH~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~ 376 (626)
.|...+.....+.-++...|++++++++.+|..+. .+|+.|++++| .++.+|.. +. .+|++|++.+|.+..+
T Consensus 164 ~r~~a~~r~~~Cl~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~-l~--~nL~~L~Ls~N~LtsL-- 235 (754)
T PRK15370 164 NREEAVQRMRDCLKNNKTELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPEN-LQ--GNIKTLYANSNQLTSI-- 235 (754)
T ss_pred cHHHHHHHHHhhcccCceEEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChh-hc--cCCCEEECCCCccccC--
Confidence 34444444334444567789999999999998775 48999999999 69999987 54 5899999999986532
Q ss_pred CCCcccccCCccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCcccccccccccccccccee
Q 006902 377 APEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELW 456 (626)
Q Consensus 377 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~ 456 (626)
+..+. .+|+.|.++.+....+. .. ...+|+.|++.++.-. .++. .+ +++|+.|+
T Consensus 236 --------------P~~l~--~~L~~L~Ls~N~L~~LP---~~--l~s~L~~L~Ls~N~L~-~LP~--~l--~~sL~~L~ 289 (754)
T PRK15370 236 --------------PATLP--DTIQEMELSINRITELP---ER--LPSALQSLDLFHNKIS-CLPE--NL--PEELRYLS 289 (754)
T ss_pred --------------Chhhh--ccccEEECcCCccCcCC---hh--HhCCCCEEECcCCccC-cccc--cc--CCCCcEEE
Confidence 22222 36788888766554332 21 2357999999876433 3311 22 25899999
Q ss_pred ecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccC
Q 006902 457 IYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMM 536 (626)
Q Consensus 457 l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~ 536 (626)
+++|. ++.+ |.. ..++|+.|++++| .+..+|. ...++|+.|++.+| .+..++.
T Consensus 290 Ls~N~-Lt~L-P~~-----------lp~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N-~Lt~LP~----------- 342 (754)
T PRK15370 290 VYDNS-IRTL-PAH-----------LPSGITHLNVQSN-SLTALPE-TLPPGLKTLEAGEN-ALTSLPA----------- 342 (754)
T ss_pred CCCCc-cccC-ccc-----------chhhHHHHHhcCC-ccccCCc-cccccceeccccCC-ccccCCh-----------
Confidence 99863 4332 211 1257889999986 5566663 22478999999988 4555543
Q ss_pred CCCCcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcc
Q 006902 537 GHISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERK 594 (626)
Q Consensus 537 ~~~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l 594 (626)
..+++|+.|+++++ .+..+|.. ..++|++|++.+| +|..+|......++.|
T Consensus 343 ---~l~~sL~~L~Ls~N-~L~~LP~~--lp~~L~~LdLs~N-~Lt~LP~~l~~sL~~L 393 (754)
T PRK15370 343 ---SLPPELQVLDVSKN-QITVLPET--LPPTITTLDVSRN-ALTNLPENLPAALQIM 393 (754)
T ss_pred ---hhcCcccEEECCCC-CCCcCChh--hcCCcCEEECCCC-cCCCCCHhHHHHHHHH
Confidence 12479999999986 57777643 2479999999998 7889997654333333
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.01 E-value=8.9e-12 Score=133.03 Aligned_cols=234 Identities=21% Similarity=0.213 Sum_probs=129.7
Q ss_pred CcccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 311 SSLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
.+|+|++++.+++..+|+.++.+.+|..+++..| .+..+|.. |..+++|+.|.+..|... ..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~r-i~~~~~L~~l~~~~nel~----------------yi 302 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLR-ISRITSLVSLSAAYNELE----------------YI 302 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHHH-HhhhhhHHHHHhhhhhhh----------------hC
Confidence 5899999999999999999999999999999999 68999998 899999999999888754 34
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
+..+..++.|++|.+..+....+....... ....|+.|+.....-.... . ..-..++.|+.|++.++.-....+|
T Consensus 303 p~~le~~~sL~tLdL~~N~L~~lp~~~l~v-~~~~l~~ln~s~n~l~~lp-~-~~e~~~~~Lq~LylanN~Ltd~c~p-- 377 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQSNNLPSLPDNFLAV-LNASLNTLNVSSNKLSTLP-S-YEENNHAALQELYLANNHLTDSCFP-- 377 (1081)
T ss_pred CCcccccceeeeeeehhccccccchHHHhh-hhHHHHHHhhhhccccccc-c-ccchhhHHHHHHHHhcCcccccchh--
Confidence 455677888888887765543333311110 0111222222211111000 0 0111233445555444322222111
Q ss_pred ccccccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccC-ccccc----------cccCC
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVG-KIAET----------PEMMG 537 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~-~~~~~----------~~~~~ 537 (626)
.+.++.+|+.|+|++ +.+..+|. +.+|+.|++|+|+++ .++.++... ..+.. ..+ .
T Consensus 378 --------~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~f-P 446 (1081)
T KOG0618|consen 378 --------VLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSF-P 446 (1081)
T ss_pred --------hhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeec-h
Confidence 112445555555555 24444442 455555555555554 344443210 00000 000 1
Q ss_pred CCCcCCccceeecCCccccccccCCCCC-CCCccEEEecCCCC
Q 006902 538 HISPFENLQMLHLSYLPILKSIYWKPLP-FTHLKEMEVSGCNQ 579 (626)
Q Consensus 538 ~~~~fp~L~~L~l~~~~~l~~i~~~~~~-lp~L~~L~i~~C~~ 579 (626)
.+...|.|+.++++ |++|..+...... .|.|++|++.|-++
T Consensus 447 e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 23456777777776 4666664433222 26788888877665
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.98 E-value=1e-11 Score=106.76 Aligned_cols=156 Identities=22% Similarity=0.258 Sum_probs=97.6
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+...|-||++.+..+|..|..|++|+.|++..+ .++++|.+ |+.|++|++|++.-+... ..|
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmnrl~----------------~lp 95 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMNRLN----------------ILP 95 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchhhhh----------------cCc
Confidence 344578888888889999999999999999888 68999988 899999999988877643 456
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
.+++.++.|+.|+++.++... ..++....+++.|+-|.+.+....-- ...+.++++|+.|.+....-++ .|.-.
T Consensus 96 rgfgs~p~levldltynnl~e-~~lpgnff~m~tlralyl~dndfe~l---p~dvg~lt~lqil~lrdndll~--lpkei 169 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNE-NSLPGNFFYMTTLRALYLGDNDFEIL---PPDVGKLTNLQILSLRDNDLLS--LPKEI 169 (264)
T ss_pred cccCCCchhhhhhcccccccc-ccCCcchhHHHHHHHHHhcCCCcccC---ChhhhhhcceeEEeeccCchhh--CcHHH
Confidence 677888888888777554321 12333333344455555544422110 1134455555555555544443 34333
Q ss_pred cccccccCccccCccCEEEEeCCCCCcccc
Q 006902 472 EIVRKRREPFVFRSLHHVTIYSCTKLKDST 501 (626)
Q Consensus 472 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~ 501 (626)
+ .+..|+.|++.|+ .++-+|
T Consensus 170 g---------~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 170 G---------DLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred H---------HHHHHHHHhcccc-eeeecC
Confidence 3 4556666666653 444444
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.95 E-value=2.5e-09 Score=117.68 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=21.9
Q ss_pred CccceeecCCccccccccCCCCCCCCccEEEecCCC
Q 006902 543 ENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCN 578 (626)
Q Consensus 543 p~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~ 578 (626)
.+|++|++++ +.++.+|.....+++|+.|++++++
T Consensus 422 ~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 422 SGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 3566666665 3456666556667777777776653
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.93 E-value=3.3e-10 Score=121.28 Aligned_cols=64 Identities=27% Similarity=0.400 Sum_probs=58.0
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCC
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEA 377 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~ 377 (626)
+|+.|+++.|.|..+|.+++++.+|++|+|.++ .+..+|.+ +..+++|+.|+++.+.+..++..
T Consensus 69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~-~~~lknl~~LdlS~N~f~~~Pl~ 132 (1081)
T KOG0618|consen 69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPAS-ISELKNLQYLDLSFNHFGPIPLV 132 (1081)
T ss_pred HHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchh-HHhhhcccccccchhccCCCchh
Confidence 899999999999999999999999999999999 68999999 99999999999999988765544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=2.3e-09 Score=109.15 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=30.9
Q ss_pred ccccccccccc-----cccchHHhhhcccchhcccCCCCccc-------cchhhhcCCCcccEEEccCCCC
Q 006902 313 LELLDISHTYI-----QELPEELKLLVNLKCLNLRGTGQLNK-------IPRQLISKFSRLRVLRMLGTGP 371 (626)
Q Consensus 313 Lr~L~L~~~~i-----~~LP~~i~~L~~L~~L~l~~~~~l~~-------lP~~~i~~L~~L~~L~l~~~~~ 371 (626)
|++|+++++.+ ..++..+...++|++|+++++. +.. ++.. +.++++|+.|++.+|.+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQG-LTKGCGLQELDLSDNAL 93 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHH-HHhcCceeEEEccCCCC
Confidence 55666666654 2345555555556666666552 221 2232 45566666666666654
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.69 E-value=1e-08 Score=104.46 Aligned_cols=237 Identities=19% Similarity=0.130 Sum_probs=146.9
Q ss_pred cccccccccc--ccchHHhhhcccchhcccCCCCc-----cccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCc
Q 006902 315 LLDISHTYIQ--ELPEELKLLVNLKCLNLRGTGQL-----NKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGG 387 (626)
Q Consensus 315 ~L~L~~~~i~--~LP~~i~~L~~L~~L~l~~~~~l-----~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 387 (626)
.|+|..+.++ ..+..+..+.+|+.|++++|. + ..++.. +...++|++|++.++.+... +. ..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~--~~-------~~ 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASA-LRPQPSLKELCLSLNETGRI--PR-------GL 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHH-HhhCCCceEEeccccccCCc--ch-------HH
Confidence 3667777653 567778888999999999994 5 346765 77888999999998865310 00 01
Q ss_pred cchhHHhhccCCCceEEEEEechh--hHHHHhhccccccceeEEEEeccCCCc-cccc-ccccccc-ccccceeecccCC
Q 006902 388 EVLIQELLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLFLWLAGDAT-SIVD-ATAFADL-NHLNELWIYRGFE 462 (626)
Q Consensus 388 ~~~~~~l~~L~~L~~L~i~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~-~~~l~~~-~~L~~L~l~~~~~ 462 (626)
...+..+..+++|+.|+++.+... ....+...... ++|+.|++.++.... .... ...+..+ ++|++|++++|..
T Consensus 71 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 71 QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 234567778899999998866543 22222222222 569999999886432 1101 1245555 8999999998864
Q ss_pred cceEeeccccccccccCccccCccCEEEEeCCCCCcc----cc-ccccCCCccEEEEeccCccccccccCccccccccCC
Q 006902 463 LEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKD----ST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMG 537 (626)
Q Consensus 463 l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~----l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~ 537 (626)
...-...+.. ....+++|++|++++|..... ++ .+..+++|+.|++++|. +...... .+..
T Consensus 150 ~~~~~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~-------~l~~ 215 (319)
T cd00116 150 EGASCEALAK------ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGAS-------ALAE 215 (319)
T ss_pred CchHHHHHHH------HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHH-------HHHH
Confidence 4210011110 012457899999999743321 22 24566899999999884 3322111 0111
Q ss_pred CCCcCCccceeecCCccccccccCC------CCCCCCccEEEecCCC
Q 006902 538 HISPFENLQMLHLSYLPILKSIYWK------PLPFTHLKEMEVSGCN 578 (626)
Q Consensus 538 ~~~~fp~L~~L~l~~~~~l~~i~~~------~~~lp~L~~L~i~~C~ 578 (626)
.+..+|+|++|++++|+ +...... ....+.|++|++.+|.
T Consensus 216 ~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 216 TLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 34568899999999864 4321110 1124789999999983
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.68 E-value=2.7e-07 Score=96.85 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=86.4
Q ss_pred CCcccchHHHHHHHHHHHhc----CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIG 232 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~ 232 (626)
++.++||++++++|...+.+ .....+.|+|++|+|||++++.++++. ......-..+++.+....+...++..++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 36789999999999999853 344567899999999999999999987 3222223467777777778889999999
Q ss_pred HHhCCCCCccCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCc
Q 006902 233 KKIGLFDDSWKNKSFEEKAVDILRRLG--EKRFVLLLDDIWER 273 (626)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~llvlDdv~~~ 273 (626)
.++..........+.++....+.+.+. ++..+||+|+++..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 998752221133456667777777775 45689999999764
No 23
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.2e-09 Score=102.39 Aligned_cols=184 Identities=20% Similarity=0.065 Sum_probs=106.4
Q ss_pred ccccccccccccc--ccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 312 SLELLDISHTYIQ--ELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 312 ~Lr~L~L~~~~i~--~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.|+|||||.+.|+ .+-.-+..+.+|+.|.+.+..--..+-.. |.+-.+|+.|+++.|...
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~----------------- 247 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGF----------------- 247 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccccc-----------------
Confidence 5788888888765 45555677777777777776321223333 555666666666665421
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceE-ee
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEEL-KI 468 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l-~~ 468 (626)
....+.-....++.|..|+|.+|........+.--+--++|..|+|+||...-.. ..
T Consensus 248 ----------------------t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~ 305 (419)
T KOG2120|consen 248 ----------------------TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL 305 (419)
T ss_pred ----------------------chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH
Confidence 1111111122255666677777654433312111112257788888876532100 01
Q ss_pred ccccccccccCccccCccCEEEEeCCCCCcc--ccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccc
Q 006902 469 DYTEIVRKRREPFVFRSLHHVTIYSCTKLKD--STFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQ 546 (626)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~ 546 (626)
..+. ..+|+|..|+|++|..+++ +..+.+++.|++|.++.|+.+. +..+ -.+...|+|.
T Consensus 306 ~tL~--------~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~---p~~~--------~~l~s~psl~ 366 (419)
T KOG2120|consen 306 STLV--------RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII---PETL--------LELNSKPSLV 366 (419)
T ss_pred HHHH--------HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC---hHHe--------eeeccCcceE
Confidence 1111 2578899999999877766 2247788999999999987543 2111 1456678888
Q ss_pred eeecCCcc
Q 006902 547 MLHLSYLP 554 (626)
Q Consensus 547 ~L~l~~~~ 554 (626)
||++.+|-
T Consensus 367 yLdv~g~v 374 (419)
T KOG2120|consen 367 YLDVFGCV 374 (419)
T ss_pred EEEecccc
Confidence 88887764
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=1.9e-09 Score=105.90 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=78.0
Q ss_pred ccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCcccc--ccc-cCCCccEEEEeccCcccccc
Q 006902 448 DLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLV-FAPNLKSLTLFDCGAMEEII 524 (626)
Q Consensus 448 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~-~L~~L~~L~L~~~~~l~~i~ 524 (626)
....|+.|..++|....+....-++ ...++|+.|.+.+|..+++.- .++ +.+.|+.|++.+|..+.+-
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg--------~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~- 362 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALG--------QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG- 362 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHh--------cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-
Confidence 3455666666666665543222232 245677777777776666543 233 5677777777766544332
Q ss_pred ccCccccccccCCCCCcCCccceeecCCccccccc-----cCCCCCCCCccEEEecCCCCCCCCCCCC---CcCcCcceE
Q 006902 525 SVGKIAETPEMMGHISPFENLQMLHLSYLPILKSI-----YWKPLPFTHLKEMEVSGCNQLEKHPLDS---NSAKERKVV 596 (626)
Q Consensus 525 ~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i-----~~~~~~lp~L~~L~i~~C~~L~~lP~~~---~~~l~~l~~ 596 (626)
.+......+|.|+.|.+++|...++- .....++..|+.+++.+||.+..--... ...++..+.
T Consensus 363 ---------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 363 ---------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred ---------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 11224456788888888877766553 2233456777778888887766522211 114555555
Q ss_pred Eeccccc
Q 006902 597 IRGDTQW 603 (626)
Q Consensus 597 ~~~~~~~ 603 (626)
++|..-.
T Consensus 434 ~~~q~vt 440 (483)
T KOG4341|consen 434 IDCQDVT 440 (483)
T ss_pred echhhhh
Confidence 5555433
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.62 E-value=1.4e-09 Score=93.84 Aligned_cols=128 Identities=27% Similarity=0.313 Sum_probs=98.1
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+|++|+++++.|+++|.+|+.|.+|+.|++.-+ .+..+|.+ ++.++-|++|++..+.... ...|
T Consensus 57 nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprg-fgs~p~levldltynnl~e--------------~~lp 120 (264)
T KOG0617|consen 57 NLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRG-FGSFPALEVLDLTYNNLNE--------------NSLP 120 (264)
T ss_pred hhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccc-cCCCchhhhhhcccccccc--------------ccCC
Confidence 899999999999999999999999999999988 68999999 9999999999999887653 2344
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccC
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGF 461 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 461 (626)
..+-.++.|+.|++..+++ +.++.....+++|+.|++....-..-. ..+..+..|++|+|.+..
T Consensus 121 gnff~m~tlralyl~dndf---e~lp~dvg~lt~lqil~lrdndll~lp---keig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDNDF---EILPPDVGKLTNLQILSLRDNDLLSLP---KEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cchhHHHHHHHHHhcCCCc---ccCChhhhhhcceeEEeeccCchhhCc---HHHHHHHHHHHHhcccce
Confidence 4555666666666665543 344555556778888888776433111 256677888999988743
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.61 E-value=6.5e-07 Score=92.95 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=83.8
Q ss_pred CcccchHHHHHHHHHHHhc----CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCC---CeEEEEEecCccCHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNF---DCVIWVVVSKELRLEKIQED 230 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~s~~~~~~~l~~~ 230 (626)
+.++||++++++|..+|.. .....+.|+|++|+|||++++.+++...+..... -..+|+.+....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5789999999999999874 3456789999999999999999999762111111 14677887777788899999
Q ss_pred HHHHhC---CCCCccCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCc
Q 006902 231 IGKKIG---LFDDSWKNKSFEEKAVDILRRLG--EKRFVLLLDDIWER 273 (626)
Q Consensus 231 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~k~~llvlDdv~~~ 273 (626)
|++++. ...+. ...+..+....+.+.+. ++++++|+|+++..
T Consensus 95 i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 95 LANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 999883 32211 22344555566666663 56789999999765
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.58 E-value=4.3e-09 Score=102.56 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=43.9
Q ss_pred EEEecCChHHHhhhcccCCcccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccC-CC
Q 006902 293 VVFTTRFIDVCGSMEKLGSSLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLG-TG 370 (626)
Q Consensus 293 iivTtr~~~va~~~~~vH~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~-~~ 370 (626)
.+|+-|.......-......-..++|..|.|+.+| .+++.+++||.|||+.| .|+.|.++++..|.+|-.|.+.+ +.
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCc
Confidence 55666654443322222223334556666666665 34566666666666666 46666555566666666666655 44
Q ss_pred CC
Q 006902 371 PF 372 (626)
Q Consensus 371 ~~ 372 (626)
+.
T Consensus 128 I~ 129 (498)
T KOG4237|consen 128 IT 129 (498)
T ss_pred hh
Confidence 43
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.57 E-value=5.5e-08 Score=107.26 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=14.6
Q ss_pred CCCcCCccceeecCCccc
Q 006902 538 HISPFENLQMLHLSYLPI 555 (626)
Q Consensus 538 ~~~~fp~L~~L~l~~~~~ 555 (626)
.+..+++|+.|+|++++-
T Consensus 440 sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 440 SLIHLSSETTVNLEGNPL 457 (788)
T ss_pred HHhhccCCCeEECCCCCC
Confidence 566789999999998653
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.52 E-value=1.1e-08 Score=99.89 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=53.3
Q ss_pred Cccccccccccccccc-chHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCC
Q 006902 311 SSLELLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 372 (626)
..||.||||+|+|+.+ |.++..|..|-.|-+-++++|+.+|++++.+|..||.|.+.-|...
T Consensus 91 ~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 91 HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence 3799999999999987 7899999998888888855899999998999999999988877653
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.5e-08 Score=98.69 Aligned_cols=217 Identities=15% Similarity=0.126 Sum_probs=113.7
Q ss_pred ccchHHhhhcccchhcccCCCCccccch-hhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCceE
Q 006902 325 ELPEELKLLVNLKCLNLRGTGQLNKIPR-QLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVL 403 (626)
Q Consensus 325 ~LP~~i~~L~~L~~L~l~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 403 (626)
++-..=+++++|+...|+.| .+...+. +.+..|++++.|+++.|-+.. ......-+..|++|+.|
T Consensus 112 ki~akQsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~n-------------w~~v~~i~eqLp~Le~L 177 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHN-------------WFPVLKIAEQLPSLENL 177 (505)
T ss_pred HHHHHhhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHh-------------HHHHHHHHHhcccchhc
Confidence 33333455666666666666 3454442 225566666666666665432 12333445556666666
Q ss_pred EEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccccccccCcccc
Q 006902 404 ELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVF 483 (626)
Q Consensus 404 ~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l 483 (626)
+++.+.....-.- .......+|+.|.|..|.-. ...-...+...|+|+.|.+.++.... ..... ..-+
T Consensus 178 Nls~Nrl~~~~~s-~~~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~---~~~~~-------~~i~ 245 (505)
T KOG3207|consen 178 NLSSNRLSNFISS-NTTLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIIL---IKATS-------TKIL 245 (505)
T ss_pred ccccccccCCccc-cchhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccc---eecch-------hhhh
Confidence 6554322110000 00013556777777777533 11011134466788888887664221 11111 0145
Q ss_pred CccCEEEEeCCCCCcc--ccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccC
Q 006902 484 RSLHHVTIYSCTKLKD--STFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYW 561 (626)
Q Consensus 484 ~~L~~L~L~~c~~l~~--l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~ 561 (626)
..|+.|+|++++.+.. .+-.+.||.|+.|+++.| .+.++.... . +.......||+|++|.+... +..+|+.
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d--~---~s~~kt~~f~kL~~L~i~~N-~I~~w~s 318 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPD--V---ESLDKTHTFPKLEYLNISEN-NIRDWRS 318 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCC--c---cchhhhcccccceeeecccC-ccccccc
Confidence 7788888888654432 234778888888888877 444443210 0 01113456888888888774 4444442
Q ss_pred --CCCCCCCccEEEe
Q 006902 562 --KPLPFTHLKEMEV 574 (626)
Q Consensus 562 --~~~~lp~L~~L~i 574 (626)
....+++|+.|.+
T Consensus 319 l~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 319 LNHLRTLENLKHLRI 333 (505)
T ss_pred cchhhccchhhhhhc
Confidence 2334555655554
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.6e-08 Score=95.07 Aligned_cols=61 Identities=25% Similarity=0.173 Sum_probs=46.2
Q ss_pred Cccccccccccccc-ccchHHhhhcccchhcccCCCCccccchh-hhcCCCcccEEEccCCCC
Q 006902 311 SSLELLDISHTYIQ-ELPEELKLLVNLKCLNLRGTGQLNKIPRQ-LISKFSRLRVLRMLGTGP 371 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~-~LP~~i~~L~~L~~L~l~~~~~l~~lP~~-~i~~L~~L~~L~l~~~~~ 371 (626)
..|+.|.|.+..+. .+-..|.+=.+|+.||++.|..+++..-. ++.+++.|+.|++.-|..
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 47888999998765 34566777788999999999877654433 356788888888887764
No 32
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.48 E-value=1.4e-06 Score=77.33 Aligned_cols=122 Identities=24% Similarity=0.154 Sum_probs=74.9
Q ss_pred cchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCC
Q 006902 161 VGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDD 240 (626)
Q Consensus 161 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~ 240 (626)
+|++..++.+...+.......+.|+|.+|+|||++|+.+++.. . ..-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4788899999999887777889999999999999999999987 2 222346677665543322222111100
Q ss_pred ccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc-----cccccccCCCCCCC---CCCcEEEEecCCh
Q 006902 241 SWKNKSFEEKAVDILRRLGEKRFVLLLDDIWER-----VDLTEVGVPLPSPQ---NTTSKVVFTTRFI 300 (626)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~-----~~~~~l~~~~~~~~---~~~s~iivTtr~~ 300 (626)
............+..++++||++.. ..+..+..... .. ..+..+|+||...
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLN-DLRIDRENVRVIGATNRP 130 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcC-ceeccCCCeEEEEecCcc
Confidence 0111122233456789999999853 12222222221 11 3567888888753
No 33
>PF05729 NACHT: NACHT domain
Probab=98.45 E-value=6.3e-07 Score=81.55 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=68.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCC----CCeEEEEEecCccCHH---HHHHHHHHHhCCCCCccCCcCHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNN----FDCVIWVVVSKELRLE---KIQEDIGKKIGLFDDSWKNKSFEEKAV 252 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~s~~~~~~---~l~~~i~~~l~~~~~~~~~~~~~~~~~ 252 (626)
+++.|+|.+|+||||+++.++... ..... +...+|+......... .+...+..+..... .......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~- 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEELL- 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHHHH-
Confidence 578999999999999999999988 33332 4567777766554332 34444444433211 1111111
Q ss_pred HHHHHhCCCcEEEEEeCCCCccc---------ccccc-CCCCCCCCCCcEEEEecCChHHH
Q 006902 253 DILRRLGEKRFVLLLDDIWERVD---------LTEVG-VPLPSPQNTTSKVVFTTRFIDVC 303 (626)
Q Consensus 253 ~l~~~l~~k~~llvlDdv~~~~~---------~~~l~-~~~~~~~~~~s~iivTtr~~~va 303 (626)
....-..+++++|+|++.+... +..+. ..++.....+.+++||+|.....
T Consensus 74 -~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~ 133 (166)
T PF05729_consen 74 -QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP 133 (166)
T ss_pred -HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH
Confidence 1112257899999999876432 12221 11220124589999999987663
No 34
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=4.2e-07 Score=87.33 Aligned_cols=92 Identities=22% Similarity=0.165 Sum_probs=63.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc--cCHHHHHHHHHH-----HhCCCCCccCCcCHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE--LRLEKIQEDIGK-----KIGLFDDSWKNKSFEEK 250 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~l~~~i~~-----~l~~~~~~~~~~~~~~~ 250 (626)
.-..++|+|++|+|||||++.+|+.. .. .+|+.++|+.+.+. ++..++++.+.. +++.+... ...-....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHHH
Confidence 55788999999999999999999988 33 48999999998777 799999999933 33321100 00001111
Q ss_pred HHHHHHH-hCCCcEEEEEeCCCC
Q 006902 251 AVDILRR-LGEKRFVLLLDDIWE 272 (626)
Q Consensus 251 ~~~l~~~-l~~k~~llvlDdv~~ 272 (626)
....... -.+++.++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 2222222 258999999999964
No 35
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.35 E-value=1.4e-06 Score=75.81 Aligned_cols=116 Identities=24% Similarity=0.286 Sum_probs=76.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhc--cCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLEN--QNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDIL 255 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (626)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+..++.+... ..+...+...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34678999999999999999999987210 01134577999988889999999999999987642 346667777888
Q ss_pred HHhCCCc-EEEEEeCCCCc-c--ccccccCCCCCCCCCCcEEEEecC
Q 006902 256 RRLGEKR-FVLLLDDIWER-V--DLTEVGVPLPSPQNTTSKVVFTTR 298 (626)
Q Consensus 256 ~~l~~k~-~llvlDdv~~~-~--~~~~l~~~~~~~~~~~s~iivTtr 298 (626)
+.+...+ .+||+||+... . .++.+.. +. + ..+.++|+..+
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~-~-~~~~~vvl~G~ 124 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRS-LL-N-ESNIKVVLVGT 124 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HT-C-SCBEEEEEEES
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HH-h-CCCCeEEEEEC
Confidence 8886554 59999999654 1 1222221 22 2 45566666554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=1.2e-07 Score=89.34 Aligned_cols=211 Identities=19% Similarity=0.143 Sum_probs=136.1
Q ss_pred cccccccccc-------cc--cccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCccc
Q 006902 312 SLELLDISHT-------YI--QELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSV 382 (626)
Q Consensus 312 ~Lr~L~L~~~-------~i--~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 382 (626)
.|.||..+++ +| ..||-.+.-+++|..+.++.|. -+.|-.- ...=+-|+++.+.++.....+.-....+
T Consensus 183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~-~~~kptl~t~~v~~s~~~~~~~l~pe~~ 260 (490)
T KOG1259|consen 183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDI-ELLKPTLQTICVHNTTIQDVPSLLPETI 260 (490)
T ss_pred heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheece-eecCchhheeeeecccccccccccchhh
Confidence 5777777665 23 2578788888999999999994 4555441 3344678999988775443222111111
Q ss_pred -----ccC---CccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccc
Q 006902 383 -----LFG---GGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNE 454 (626)
Q Consensus 383 -----~~~---~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 454 (626)
++. ..+....++..-+.|.+++++.+.... +-.+..+.+.++.|+++.+... ...+++.+++|..
T Consensus 261 ~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~---iDESvKL~Pkir~L~lS~N~i~----~v~nLa~L~~L~~ 333 (490)
T KOG1259|consen 261 LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ---IDESVKLAPKLRRLILSQNRIR----TVQNLAELPQLQL 333 (490)
T ss_pred hcCccCCCCCccCCceEEecchHhhhhhccccccchhh---hhhhhhhccceeEEecccccee----eehhhhhcccceE
Confidence 111 112233344445566677776665444 3444555778888888876433 3346778888888
Q ss_pred eeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccc
Q 006902 455 LWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPE 534 (626)
Q Consensus 455 L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~ 534 (626)
|.++++.-.+ ...|.. .+.|+++|.|++ +.+.++..+++|-+|..|+++++ .++.+...
T Consensus 334 LDLS~N~Ls~--~~Gwh~---------KLGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~N-~Ie~ldeV-------- 392 (490)
T KOG1259|consen 334 LDLSGNLLAE--CVGWHL---------KLGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSSN-QIEELDEV-------- 392 (490)
T ss_pred eecccchhHh--hhhhHh---------hhcCEeeeehhh-hhHhhhhhhHhhhhheecccccc-chhhHHHh--------
Confidence 8888654443 456665 788888888888 47778888888888888888876 45554321
Q ss_pred cCCCCCcCCccceeecCCcc
Q 006902 535 MMGHISPFENLQMLHLSYLP 554 (626)
Q Consensus 535 ~~~~~~~fp~L~~L~l~~~~ 554 (626)
..+|.+|+|+.+.+.+.|
T Consensus 393 --~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 393 --NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred --cccccccHHHHHhhcCCC
Confidence 156788888888887755
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=2.9e-07 Score=67.92 Aligned_cols=58 Identities=33% Similarity=0.551 Sum_probs=53.3
Q ss_pred cccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCC
Q 006902 312 SLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTG 370 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 370 (626)
+|++|++++|.+..+| ..+..+.+|++|++++| .+..+|.+.+.++++|++|++.+|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 6899999999999998 47799999999999999 6999998878999999999999885
No 38
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.32 E-value=1.8e-05 Score=78.27 Aligned_cols=90 Identities=19% Similarity=0.314 Sum_probs=60.4
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHH-
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDIL- 255 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~- 255 (626)
....++.|+|++|+||||+++.+++.. .. ..+ ..+|+. ....+..+++..++..++.+.. ..+.......+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 456689999999999999999999887 21 211 223433 3345778899999998887543 122222223332
Q ss_pred ---HH-hCCCcEEEEEeCCCCc
Q 006902 256 ---RR-LGEKRFVLLLDDIWER 273 (626)
Q Consensus 256 ---~~-l~~k~~llvlDdv~~~ 273 (626)
.. ..+++.++|+||++..
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l 135 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNL 135 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccC
Confidence 22 2678899999999875
No 39
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.31 E-value=2.6e-06 Score=79.12 Aligned_cols=44 Identities=30% Similarity=0.450 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHHh---cCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 160 IVGLQSQLEQVWRCLA---EESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 160 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
||||+++++++...|. ....+.+.|+|.+|+|||+|++.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999993 2467899999999999999999999988
No 40
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.29 E-value=1.5e-06 Score=87.07 Aligned_cols=92 Identities=20% Similarity=0.215 Sum_probs=62.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc--CHHHHHHHHHHHhCCCCCccCCcCHHH-----H
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL--RLEKIQEDIGKKIGLFDDSWKNKSFEE-----K 250 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~-----~ 250 (626)
.-.-..|+|++|+||||||+.||+.. .. .+|+.++||.+.+.. ++.++++.+...+-... ++...... .
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~~~~~~~~a~~ 243 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPAERHVQVAEM 243 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCCHHHHHHHHHH
Confidence 45667899999999999999999998 33 399999999999887 77888888863221111 11111111 1
Q ss_pred HHHHHHH--hCCCcEEEEEeCCCCc
Q 006902 251 AVDILRR--LGEKRFVLLLDDIWER 273 (626)
Q Consensus 251 ~~~l~~~--l~~k~~llvlDdv~~~ 273 (626)
+-...++ -.++..+|++|++...
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEEChHHH
Confidence 1111222 3679999999999643
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.5e-07 Score=91.67 Aligned_cols=184 Identities=20% Similarity=0.103 Sum_probs=110.7
Q ss_pred cccccccccc---cccccchHHhhhcccchhcccCCCCccccchh-hhcCCCcccEEEccCCCCCcccCCCCcccccCCc
Q 006902 312 SLELLDISHT---YIQELPEELKLLVNLKCLNLRGTGQLNKIPRQ-LISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGG 387 (626)
Q Consensus 312 ~Lr~L~L~~~---~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 387 (626)
+++.||||+| ++..+-.-+..|++|+.|+|+.|. +...-++ .-..+++|+.|.+++|++. .
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls--------------~ 211 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLS--------------W 211 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCCCC--------------H
Confidence 7788999998 344555667888899999999883 4432222 1245778899999998865 3
Q ss_pred cchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEe
Q 006902 388 EVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELK 467 (626)
Q Consensus 388 ~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~ 467 (626)
.....-+...++|..|.+..+.....+.. ....+..|+.|+|+++...... .......++.|..|+++.|+.-.--.
T Consensus 212 k~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~~~-~~~~~~~l~~L~~Lnls~tgi~si~~ 288 (505)
T KOG3207|consen 212 KDVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLIDFD-QGYKVGTLPGLNQLNLSSTGIASIAE 288 (505)
T ss_pred HHHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCcccccc-cccccccccchhhhhccccCcchhcC
Confidence 34445566678888877765532111111 1122456888888887655322 44456677888888887654322111
Q ss_pred eccccccccccCccccCccCEEEEeCCCC--CccccccccCCCccEEEEecc
Q 006902 468 IDYTEIVRKRREPFVFRSLHHVTIYSCTK--LKDSTFLVFAPNLKSLTLFDC 517 (626)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--l~~l~~l~~L~~L~~L~L~~~ 517 (626)
++.- ..--...+++|++|.+..++- +..+..+..+++|+.|.+...
T Consensus 289 ~d~~----s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 289 PDVE----SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred CCcc----chhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 1110 000012578888888888533 333334556777777776544
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.26 E-value=8.9e-08 Score=94.31 Aligned_cols=150 Identities=16% Similarity=0.186 Sum_probs=106.4
Q ss_pred ccccceeEEEEeccCCCccccccccc-cccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCcc
Q 006902 421 KLKSCIRSLFLWLAGDATSIVDATAF-ADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKD 499 (626)
Q Consensus 421 ~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 499 (626)
..+..|+.|+..++...... .+.+| .+.++|+.|.+.+|..+.+.....++ .+.+.|+.+++.+|....+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~-~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~--------rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDE-VLWALGQHCHNLQVLELSGCQQFSDRGFTMLG--------RNCPHLERLDLEECGLITD 361 (483)
T ss_pred hhhhHhhhhcccCCCCCchH-HHHHHhcCCCceEEEeccccchhhhhhhhhhh--------cCChhhhhhcccccceehh
Confidence 34667888888888766554 22334 36689999999999987654333333 3678999999999977666
Q ss_pred cc--c-cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccCC-CCCCCCccEEEec
Q 006902 500 ST--F-LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYWK-PLPFTHLKEMEVS 575 (626)
Q Consensus 500 l~--~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~-~~~lp~L~~L~i~ 575 (626)
-. . -.+.|.|+.|.|++|..+.+-...- +.....+...|..+.+.+||.+.+-..+ ...+++|+++++.
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~-------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRH-------LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhh-------hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 42 2 3478999999999998777653211 1113356778999999999988763322 4568999999999
Q ss_pred CCCCCCCCCCC
Q 006902 576 GCNQLEKHPLD 586 (626)
Q Consensus 576 ~C~~L~~lP~~ 586 (626)
+|-...+-|..
T Consensus 435 ~~q~vtk~~i~ 445 (483)
T KOG4341|consen 435 DCQDVTKEAIS 445 (483)
T ss_pred chhhhhhhhhH
Confidence 99887765543
No 43
>PF13173 AAA_14: AAA domain
Probab=98.20 E-value=2.6e-06 Score=73.64 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=69.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHh
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRL 258 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (626)
.+++.|.|+-|+||||++++++.+. . ....+++++..+........ .+ ....+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 4689999999999999999999877 2 33456777665542211000 00 223333334
Q ss_pred CCCcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHHh
Q 006902 259 GEKRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVCG 304 (626)
Q Consensus 259 ~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va~ 304 (626)
..++.++++|++....+|......+. +.....+|++|+.+.....
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~-d~~~~~~ii~tgS~~~~l~ 103 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLV-DNGPNIKIILTGSSSSLLS 103 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHH-HhccCceEEEEccchHHHh
Confidence 44778899999999888888766665 5556789999998766553
No 44
>PTZ00202 tuzin; Provisional
Probab=98.16 E-value=1.8e-05 Score=79.89 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=58.4
Q ss_pred CCcccchHHHHHHHHHHHhcC---CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAEE---SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGK 233 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~ 233 (626)
...|+||+.+...+...|.+. ..+++.|.|++|+|||||++.+.... . ...++.-.. +..++++.++.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~------~~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G------MPAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C------ceEEEECCC--CHHHHHHHHHH
Confidence 478999999999999999652 34688999999999999999999755 1 123332222 67999999999
Q ss_pred HhCCCC
Q 006902 234 KIGLFD 239 (626)
Q Consensus 234 ~l~~~~ 239 (626)
+++.+.
T Consensus 332 ALGV~p 337 (550)
T PTZ00202 332 ALGVPN 337 (550)
T ss_pred HcCCCC
Confidence 999854
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.16 E-value=3.2e-07 Score=82.78 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=9.9
Q ss_pred ccccccccccccccchHHh-hhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCC
Q 006902 313 LELLDISHTYIQELPEELK-LLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGP 371 (626)
Q Consensus 313 Lr~L~L~~~~i~~LP~~i~-~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 371 (626)
++.|+|+++.|..+. .++ .|.+|+.|++++| .++.++. +..|++|++|++.+|.+
T Consensus 21 ~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 21 LRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS--
T ss_pred ccccccccccccccc-chhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCCCC
Confidence 445555555554442 233 3445555555555 3555543 45555555555555543
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.15 E-value=1.2e-06 Score=79.06 Aligned_cols=139 Identities=20% Similarity=0.284 Sum_probs=39.9
Q ss_pred ccccccchHHhhhcccchhcccCCCCccccchhhhc-CCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCC
Q 006902 321 TYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLIS-KFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKY 399 (626)
Q Consensus 321 ~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~-~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 399 (626)
..|+..|. +.+..+++.|+|+++ .+..|.. ++ .|.+|++|++++|.+.. +.++..|++
T Consensus 7 ~~i~~~~~-~~n~~~~~~L~L~~n-~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~-----------------l~~l~~L~~ 65 (175)
T PF14580_consen 7 NMIEQIAQ-YNNPVKLRELNLRGN-QISTIEN--LGATLDKLEVLDLSNNQITK-----------------LEGLPGLPR 65 (175)
T ss_dssp -------------------------------S----TT-TT--EEE-TTS--S-------------------TT----TT
T ss_pred cccccccc-ccccccccccccccc-ccccccc--hhhhhcCCCEEECCCCCCcc-----------------ccCccChhh
Confidence 34555553 344557899999999 5888764 66 68899999999998652 334667788
Q ss_pred CceEEEEEechhhHHH-HhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecccccccccc
Q 006902 400 LEVLELTLGSYHALQI-LLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRR 478 (626)
Q Consensus 400 L~~L~i~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 478 (626)
|+.|.+..+....+.. +.. .+++|+.|.+.++.-. .+.++..+.
T Consensus 66 L~~L~L~~N~I~~i~~~l~~---~lp~L~~L~L~~N~I~-~l~~l~~L~------------------------------- 110 (175)
T PF14580_consen 66 LKTLDLSNNRISSISEGLDK---NLPNLQELYLSNNKIS-DLNELEPLS------------------------------- 110 (175)
T ss_dssp --EEE--SS---S-CHHHHH---H-TT--EEE-TTS----SCCCCGGGG-------------------------------
T ss_pred hhhcccCCCCCCccccchHH---hCCcCCEEECcCCcCC-ChHHhHHHH-------------------------------
Confidence 8888777665544421 211 1445666666554322 111112222
Q ss_pred CccccCccCEEEEeCCCCCcccc----ccccCCCccEEEEeccC
Q 006902 479 EPFVFRSLHHVTIYSCTKLKDST----FLVFAPNLKSLTLFDCG 518 (626)
Q Consensus 479 ~~~~l~~L~~L~L~~c~~l~~l~----~l~~L~~L~~L~L~~~~ 518 (626)
.+++|+.|+|.+++-...-. -+..+|+|+.|+-....
T Consensus 111 ---~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 111 ---SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp ---G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred ---cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 45666666666654433311 25677888877765543
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.14 E-value=1.5e-06 Score=91.34 Aligned_cols=174 Identities=20% Similarity=0.219 Sum_probs=122.7
Q ss_pred cccccccccccccccchHHhhhc-ccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELPEELKLLV-NLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~-~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
.+..|++.++.+.++|..++.+. +|+.|+++++ .+..+|.. +..+++|+.|++.+|... ..
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~l~----------------~l 178 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFNDLS----------------DL 178 (394)
T ss_pred ceeEEecCCcccccCccccccchhhccccccccc-chhhhhhh-hhccccccccccCCchhh----------------hh
Confidence 57888999999999998888885 9999999999 68888866 899999999999998764 23
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
+...+.+++|+.|.+.......+.... .....|+.|.+.+...... ...+..+.++..|.+.+..... .+..
T Consensus 179 ~~~~~~~~~L~~L~ls~N~i~~l~~~~---~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~~~~--~~~~ 250 (394)
T COG4886 179 PKLLSNLSNLNNLDLSGNKISDLPPEI---ELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNKLED--LPES 250 (394)
T ss_pred hhhhhhhhhhhheeccCCccccCchhh---hhhhhhhhhhhcCCcceec---chhhhhcccccccccCCceeee--ccch
Confidence 333447778888887766655444332 2345677787777642212 2345566666666654332221 2444
Q ss_pred ccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccc
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAME 521 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~ 521 (626)
.. .+++|+.|+++++ .+.+++.++.+.+|+.|++++.....
T Consensus 251 ~~---------~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 251 IG---------NLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hc---------cccccceeccccc-cccccccccccCccCEEeccCccccc
Confidence 44 6778999999885 77777778899999999998765443
No 48
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=5.1e-05 Score=77.43 Aligned_cols=113 Identities=20% Similarity=0.253 Sum_probs=88.2
Q ss_pred CcccchHHHHHHHHHHHhc----CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGK 233 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~ 233 (626)
..+.+|+++++++...|.. +...-+-|+|..|.|||+.++.+...........+ +++|.+-...+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4589999999999988864 33444899999999999999999998843323333 789999999999999999999
Q ss_pred HhCCCCCccCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCc
Q 006902 234 KIGLFDDSWKNKSFEEKAVDILRRLG--EKRFVLLLDDIWER 273 (626)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~llvlDdv~~~ 273 (626)
+++.... ......+....+.+.+. ++.+++|||++...
T Consensus 96 ~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 96 KLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 9963221 44566666677777775 57899999999754
No 49
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.07 E-value=6.6e-06 Score=79.46 Aligned_cols=44 Identities=34% Similarity=0.491 Sum_probs=37.9
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 160 IVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 160 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|+||++++++|.+++..+....+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 68999999999999998888999999999999999999999876
No 50
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.05 E-value=1.1e-05 Score=81.43 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=63.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc--cCHHHHHHHHHHHhCCCCCccCCcCHHHH----H
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE--LRLEKIQEDIGKKIGLFDDSWKNKSFEEK----A 251 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~l~~~i~~~l~~~~~~~~~~~~~~~----~ 251 (626)
.-..++|+|.+|.|||||++.+++.. . .++|+..+|+.+.+. .++.++++.+...+-...-+......... .
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 45678999999999999999999988 3 347999999999866 78999999985433211100011111111 1
Q ss_pred HHHHHH-hCCCcEEEEEeCCCCc
Q 006902 252 VDILRR-LGEKRFVLLLDDIWER 273 (626)
Q Consensus 252 ~~l~~~-l~~k~~llvlDdv~~~ 273 (626)
+..... -++++.+|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 112222 3589999999999643
No 51
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.98 E-value=8.9e-05 Score=81.02 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=80.4
Q ss_pred CCcccchHHHHHHHHHHHhc----C-CCeEEEEEcCCCchHHHHHHHHHHHHhhc--cCCCC--eEEEEEecCccCHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAE----E-SAGIIGLYGMGGVGKTTLLTRINNKFLEN--QNNFD--CVIWVVVSKELRLEKI 227 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~--~~~wv~~s~~~~~~~l 227 (626)
++.+.||++++++|...|.. . ...++-|+|++|.|||+.++.|.+...+. +.... .+++|.+....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 36788999999999998864 2 33577899999999999999999876321 11222 2567777777788899
Q ss_pred HHHHHHHhCCCCCccCCcCHHHHHHHHHHHhC---CCcEEEEEeCCCCc
Q 006902 228 QEDIGKKIGLFDDSWKNKSFEEKAVDILRRLG---EKRFVLLLDDIWER 273 (626)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~llvlDdv~~~ 273 (626)
...|.+++....+. ...........+...+. ....+||||++...
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 99999888443221 23333445555555552 23458999999653
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.96 E-value=2.3e-06 Score=80.80 Aligned_cols=126 Identities=20% Similarity=0.227 Sum_probs=82.1
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
.|..||||+|.|+.+-++++-++.++.|+++.| .+..+.. +..|++|++|++++|....+ -
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~~----------------~ 345 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAEC----------------V 345 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHhh----------------h
Confidence 577899999999999999999999999999999 5777776 78899999999998865321 0
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccC
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGF 461 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 461 (626)
.--.+|-++++|.+..+..+.+..+.. +=+|..|++.++... .+....++.++++|+.|.+.+++
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIETLSGLRK----LYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhhhhhhHh----hhhheeccccccchh-hHHHhcccccccHHHHHhhcCCC
Confidence 001234555566655444433333322 335666666655433 22233456666666666666544
No 53
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.93 E-value=0.00096 Score=73.35 Aligned_cols=139 Identities=18% Similarity=0.086 Sum_probs=83.4
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCC---eEEEEEecCc---cCHHHHHHH-
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFD---CVIWVVVSKE---LRLEKIQED- 230 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~---~~~wv~~s~~---~~~~~l~~~- 230 (626)
+.++|.+..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+. ..-|+.++.. .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4579999999999888876677789999999999999999999876 3333331 2234444321 122222111
Q ss_pred --------------HHHHhCCCCC----------------ccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--ccccc
Q 006902 231 --------------IGKKIGLFDD----------------SWKNKSFEEKAVDILRRLGEKRFVLLLDDIWER--VDLTE 278 (626)
Q Consensus 231 --------------i~~~l~~~~~----------------~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~--~~~~~ 278 (626)
.+...+.... +.... ....+..+.+.+.++++.++.|+.|.. ..|..
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 1122221100 00111 233567888888889998887766653 45777
Q ss_pred ccCCCCCCCCCCcEEEE--ecCC
Q 006902 279 VGVPLPSPQNTTSKVVF--TTRF 299 (626)
Q Consensus 279 l~~~~~~~~~~~s~iiv--Ttr~ 299 (626)
+...+. ...+..-+++ ||++
T Consensus 312 ik~~~~-~~~~~~~VLI~aTt~~ 333 (615)
T TIGR02903 312 IKKLFE-EGAPADFVLIGATTRD 333 (615)
T ss_pred hhhhcc-cCccceEEEEEecccc
Confidence 765555 4444444444 5654
No 54
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.92 E-value=9.2e-05 Score=76.19 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=72.6
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGL 237 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~ 237 (626)
.++++.+...+.+...|.. .+.+.++|++|+|||++|+.+++.. .....|+.+.||++++.++..+++....-
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP---- 247 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRP---- 247 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCC----
Confidence 4578889999999999875 3567789999999999999999987 44567888999999999887776643210
Q ss_pred CCCccCCcCHHHHHHHHHHHh--CCCcEEEEEeCCCCc
Q 006902 238 FDDSWKNKSFEEKAVDILRRL--GEKRFVLLLDDIWER 273 (626)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~l--~~k~~llvlDdv~~~ 273 (626)
....+... .....+.+.... .++++++|+|++...
T Consensus 248 ~~vgy~~~-~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 248 NGVGFRRK-DGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCCCeEec-CchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00000000 001111122222 247899999999654
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=5.5e-06 Score=55.99 Aligned_cols=40 Identities=43% Similarity=0.605 Sum_probs=27.8
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccch
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPR 352 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~ 352 (626)
+|++|++++|+|+++|..+++|.+|++|++++| .++.+|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 577777777777777777777777777777777 4666654
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.88 E-value=2.7e-06 Score=82.29 Aligned_cols=244 Identities=18% Similarity=0.088 Sum_probs=137.9
Q ss_pred Cccccccccccccc-----ccchHHhhhcccchhcccCCC--C-ccccchh------hhcCCCcccEEEccCCCCCcccC
Q 006902 311 SSLELLDISHTYIQ-----ELPEELKLLVNLKCLNLRGTG--Q-LNKIPRQ------LISKFSRLRVLRMLGTGPFSFDE 376 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~-----~LP~~i~~L~~L~~L~l~~~~--~-l~~lP~~------~i~~L~~L~~L~l~~~~~~~~~~ 376 (626)
+.+.+++||+|.+. .+-..+.+.++|+.-+++.-. . ...+|+. .+.+.++|++|++++|-+..=.
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g- 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG- 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc-
Confidence 46677888887653 344556666677776666531 1 1234443 1445567888888887653200
Q ss_pred CCCcccccCCccchhHHhhccCCCceEEEEEechhh--HHH---------HhhccccccceeEEEEeccCCCccccc--c
Q 006902 377 APEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA--LQI---------LLSSNKLKSCIRSLFLWLAGDATSIVD--A 443 (626)
Q Consensus 377 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~--~~~---------l~~~~~~~~~L~~L~l~~~~~~~~~~~--~ 443 (626)
....-.-|.++..|++|.+.+++... -.. ........+.|+.+....+.-.+.-.. .
T Consensus 109 ----------~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 109 ----------IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred ----------hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 11222335567777777777654211 111 112223346777777765543221101 1
Q ss_pred ccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccc----c-ccccCCCccEEEEeccC
Q 006902 444 TAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDS----T-FLVFAPNLKSLTLFDCG 518 (626)
Q Consensus 444 ~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l----~-~l~~L~~L~~L~L~~~~ 518 (626)
..++.++.|+.+.+....... ..... .......+++|+.|+|.++..-..- . .+..+|+|+.|++.+|
T Consensus 179 ~~~~~~~~leevr~~qN~I~~---eG~~a---l~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc- 251 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRP---EGVTA---LAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC- 251 (382)
T ss_pred HHHHhccccceEEEecccccC---chhHH---HHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-
Confidence 256677889999887543221 11100 0011236899999999986443331 1 4678899999999999
Q ss_pred ccccccccCccccccccCCCCCcCCccceeecCCcccccc----ccCCCCCCCCccEEEecCCC
Q 006902 519 AMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKS----IYWKPLPFTHLKEMEVSGCN 578 (626)
Q Consensus 519 ~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~----i~~~~~~lp~L~~L~i~~C~ 578 (626)
.++.-+...+..- ...++|+|+.|.+.++..-.+ +.......|.|..|++.+|.
T Consensus 252 ll~~~Ga~a~~~a------l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 252 LLENEGAIAFVDA------LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccHHHHHHH------HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 4544332221110 224489999999988653322 11123458999999999873
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.82 E-value=2.2e-05 Score=82.40 Aligned_cols=194 Identities=25% Similarity=0.252 Sum_probs=135.3
Q ss_pred cccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCC-cccEEEccCCCCCcccCCCCcccccCCccchhHHh
Q 006902 316 LDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFS-RLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQEL 394 (626)
Q Consensus 316 L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 394 (626)
|++..+.+...+..+..+.++..|++..+ .+..+|.. +..+. +|+.|++.++.+. ..+..+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N~i~----------------~l~~~~ 159 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDNKIE----------------SLPSPL 159 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCc-ccccCccc-cccchhhcccccccccchh----------------hhhhhh
Confidence 66777777666677888889999999999 68999996 77774 9999999999864 233568
Q ss_pred hccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccc-cccccccceeecccCCcceEeeccccc
Q 006902 395 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAF-ADLNHLNELWIYRGFELEELKIDYTEI 473 (626)
Q Consensus 395 ~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~l~~~~~~~ 473 (626)
+.+++|+.|.+..+....+..... ....|+.|.+.+..-. ++... ..+.+|++|.+.+..... .+..+.
T Consensus 160 ~~l~~L~~L~l~~N~l~~l~~~~~---~~~~L~~L~ls~N~i~----~l~~~~~~~~~L~~l~~~~N~~~~--~~~~~~- 229 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSDLPKLLS---NLSNLNNLDLSGNKIS----DLPPEIELLSALEELDLSNNSIIE--LLSSLS- 229 (394)
T ss_pred hccccccccccCCchhhhhhhhhh---hhhhhhheeccCCccc----cCchhhhhhhhhhhhhhcCCccee--cchhhh-
Confidence 999999999988776655544331 3678888888877543 22222 345568888888764333 233332
Q ss_pred cccccCccccCccCEEEEeCCCCCcc-ccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCC
Q 006902 474 VRKRREPFVFRSLHHVTIYSCTKLKD-STFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSY 552 (626)
Q Consensus 474 ~~~~~~~~~l~~L~~L~L~~c~~l~~-l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~ 552 (626)
.+.++..+.+.+ ..+.. +..++.+++|+.|+++++ .+.++.. ++.+.+|+.|++++
T Consensus 230 --------~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~-------------~~~~~~l~~L~~s~ 286 (394)
T COG4886 230 --------NLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNN-QISSISS-------------LGSLTNLRELDLSG 286 (394)
T ss_pred --------hcccccccccCC-ceeeeccchhccccccceeccccc-ccccccc-------------ccccCccCEEeccC
Confidence 566777777555 34555 346888889999999877 4555532 46788899999988
Q ss_pred cccccccc
Q 006902 553 LPILKSIY 560 (626)
Q Consensus 553 ~~~l~~i~ 560 (626)
.......+
T Consensus 287 n~~~~~~~ 294 (394)
T COG4886 287 NSLSNALP 294 (394)
T ss_pred ccccccch
Confidence 55444433
No 58
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.80 E-value=2.3e-06 Score=87.74 Aligned_cols=188 Identities=22% Similarity=0.224 Sum_probs=109.8
Q ss_pred ccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHh
Q 006902 315 LLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQEL 394 (626)
Q Consensus 315 ~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 394 (626)
..||+.|++.++|..+..+..|..+.|..| .+..+|.. |++|..|.+|+++.|.... .+..+
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~-i~~L~~lt~l~ls~NqlS~----------------lp~~l 140 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEA-ICNLEALTFLDLSSNQLSH----------------LPDGL 140 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhc-cceecchh-hhhhhHHHHhhhccchhhc----------------CChhh
Confidence 368888899999999999999999999888 68889988 8999999888888876432 11222
Q ss_pred hccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecccccc
Q 006902 395 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIV 474 (626)
Q Consensus 395 ~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 474 (626)
-.|+ |+.| -+.++...... ..+.....|..|..+.|... .+ +.-++
T Consensus 141 C~lp-Lkvl--------------------------i~sNNkl~~lp---~~ig~~~tl~~ld~s~nei~-sl-psql~-- 186 (722)
T KOG0532|consen 141 CDLP-LKVL--------------------------IVSNNKLTSLP---EEIGLLPTLAHLDVSKNEIQ-SL-PSQLG-- 186 (722)
T ss_pred hcCc-ceeE--------------------------EEecCccccCC---cccccchhHHHhhhhhhhhh-hc-hHHhh--
Confidence 2222 2322 23222211000 12223345555555543322 22 32232
Q ss_pred ccccCccccCccCEEEEeCCCCCccccc-cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCc
Q 006902 475 RKRREPFVFRSLHHVTIYSCTKLKDSTF-LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYL 553 (626)
Q Consensus 475 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 553 (626)
.+.+|+.|.+..+ .+.++|. +..| .|..|+++ |+++..+|. .+..+..|++|.|.+
T Consensus 187 -------~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfS-cNkis~iPv------------~fr~m~~Lq~l~Len- 243 (722)
T KOG0532|consen 187 -------YLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFS-CNKISYLPV------------DFRKMRHLQVLQLEN- 243 (722)
T ss_pred -------hHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecc-cCceeecch------------hhhhhhhheeeeecc-
Confidence 5677777777764 4445553 5544 35566664 446666665 456677777777765
Q ss_pred cccccccCC---CCCCCCccEEEecCC
Q 006902 554 PILKSIYWK---PLPFTHLKEMEVSGC 577 (626)
Q Consensus 554 ~~l~~i~~~---~~~lp~L~~L~i~~C 577 (626)
+-|++-|-. .|...-.++|++.-|
T Consensus 244 NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 244 NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCCCCChHHHHhccceeeeeeecchhc
Confidence 345543322 233344566777666
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=4.2e-05 Score=77.74 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=77.0
Q ss_pred ccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccc
Q 006902 423 KSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF 502 (626)
Q Consensus 423 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~ 502 (626)
+.+++.|++.+|. ...++ .-+++|++|.+.+|..++.+ |..+ .++|++|.+++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~-L~sLP-----~LP~sLtsL~Lsnc~nLtsL-P~~L-----------P~nLe~L~Ls~Cs~L~sLP- 111 (426)
T PRK15386 51 ARASGRLYIKDCD-IESLP-----VLPNELTEITIENCNNLTTL-PGSI-----------PEGLEKLTVCHCPEISGLP- 111 (426)
T ss_pred hcCCCEEEeCCCC-CcccC-----CCCCCCcEEEccCCCCcccC-Cchh-----------hhhhhheEccCcccccccc-
Confidence 5789999999883 32331 23457999999999888654 3222 2689999999998777666
Q ss_pred cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccCCCCCC-CCccEEEecCCCCCC
Q 006902 503 LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYWKPLPF-THLKEMEVSGCNQLE 581 (626)
Q Consensus 503 l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~~~~l-p~L~~L~i~~C~~L~ 581 (626)
++|+.|+|... ....+. .-.++|+.|.+.++.....+... ..+ ++|++|.|.+|..+.
T Consensus 112 ----~sLe~L~L~~n-~~~~L~---------------~LPssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 112 ----ESVRSLEIKGS-ATDSIK---------------NVPNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNII 170 (426)
T ss_pred ----cccceEEeCCC-CCcccc---------------cCcchHhheeccccccccccccc-cccCCcccEEEecCCCccc
Confidence 46777777532 222221 11245666666432211111111 122 457777777776553
Q ss_pred CCCCCCCcCcCcceE
Q 006902 582 KHPLDSNSAKERKVV 596 (626)
Q Consensus 582 ~lP~~~~~~l~~l~~ 596 (626)
+|.+...+++.|.+
T Consensus 171 -LP~~LP~SLk~L~l 184 (426)
T PRK15386 171 -LPEKLPESLQSITL 184 (426)
T ss_pred -CcccccccCcEEEe
Confidence 45444444555554
No 60
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.75 E-value=0.00019 Score=84.23 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=80.2
Q ss_pred CcccchHHHHHHHHHHHhc-CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC-ccCHHHHHHHHHHHh
Q 006902 158 PTIVGLQSQLEQVWRCLAE-ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK-ELRLEKIQEDIGKKI 235 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~l~~~i~~~l 235 (626)
..+|-|+.-.+.+ .. ...+++.|.|++|.||||++.++.... +.++|+++.. ..+...+...++..+
T Consensus 14 ~~~~~R~rl~~~l----~~~~~~~~~~v~apaG~GKTtl~~~~~~~~-------~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRERLLAKL----SGANNYRLVLVTSPAGYGKTTLISQWAAGK-------NNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcchHHHHHH----hcccCCCeEEEECCCCCCHHHHHHHHHHhC-------CCeEEEecCcccCCHHHHHHHHHHHH
Confidence 4567776554444 33 367899999999999999999987532 2589999864 446666767777766
Q ss_pred CCCCCc-----------cCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCccc--cccccCC-CCCCCCCCcEEEEecCC
Q 006902 236 GLFDDS-----------WKNKSFEEKAVDILRRLG--EKRFVLLLDDIWERVD--LTEVGVP-LPSPQNTTSKVVFTTRF 299 (626)
Q Consensus 236 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~llvlDdv~~~~~--~~~l~~~-~~~~~~~~s~iivTtr~ 299 (626)
+..... ....+.......+...+. +.+++||+||+....+ ...+... +. ....+.++|||||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~-~~~~~~~lv~~sR~ 161 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR-HQPENLTLVVLSRN 161 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH-hCCCCeEEEEEeCC
Confidence 421110 011222333444444443 6799999999976421 1212111 11 22346688899997
Q ss_pred h
Q 006902 300 I 300 (626)
Q Consensus 300 ~ 300 (626)
.
T Consensus 162 ~ 162 (903)
T PRK04841 162 L 162 (903)
T ss_pred C
Confidence 3
No 61
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.75 E-value=0.00025 Score=69.95 Aligned_cols=116 Identities=23% Similarity=0.343 Sum_probs=82.6
Q ss_pred CCcccchHHHHHHHHHHHhcCCC---eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAEESA---GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGK 233 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~~~~---~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~ 233 (626)
.+.+.+|+..+..+..++.+... ..|-|+|..|.|||.+.+++++.. .. ..+|+++-..++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 46788999999999999987543 345789999999999999999876 22 2589999999999999999999
Q ss_pred HhCC-CCCccCC----cCHHHHHHHHHH--HhC--CCcEEEEEeCCCCcccccc
Q 006902 234 KIGL-FDDSWKN----KSFEEKAVDILR--RLG--EKRFVLLLDDIWERVDLTE 278 (626)
Q Consensus 234 ~l~~-~~~~~~~----~~~~~~~~~l~~--~l~--~k~~llvlDdv~~~~~~~~ 278 (626)
+.+. +.++... .........+.+ ... ++.++||||++....+.+.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a 132 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDA 132 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccch
Confidence 9863 2221111 112222233333 222 4589999999976554443
No 62
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.74 E-value=7.9e-05 Score=75.21 Aligned_cols=46 Identities=33% Similarity=0.439 Sum_probs=39.6
Q ss_pred CcccchHHHHHHHHHHHhc-----CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|+|+++.++.+..++.. .....+.++|++|+|||+||+.+.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999998863 345668899999999999999999877
No 63
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.74 E-value=5.8e-05 Score=72.54 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 006902 163 LQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK 220 (626)
Q Consensus 163 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 220 (626)
.+..++.+.+++.......+.|+|..|+|||+||+.+++.. .......++++++.
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAE 76 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHH
Confidence 45677888888766677889999999999999999999987 22333456665543
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=1.2e-05 Score=76.07 Aligned_cols=68 Identities=22% Similarity=0.236 Sum_probs=38.9
Q ss_pred ccCccCEEEEeCCCCCcccc---ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcccccc
Q 006902 482 VFRSLHHVTIYSCTKLKDST---FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKS 558 (626)
Q Consensus 482 ~l~~L~~L~L~~c~~l~~l~---~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~ 558 (626)
-|||+..+.+..|+ +++.. ....+|.+-.|+|+.. ++..+.... .+.+||.|.-|.+.+.|-+..
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswasvD----------~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVD----------ALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hcccchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHHHHH----------HHcCCchhheeeccCCccccc
Confidence 46777777777663 22222 2345566666666544 344443211 456788888888777776665
Q ss_pred ccC
Q 006902 559 IYW 561 (626)
Q Consensus 559 i~~ 561 (626)
+..
T Consensus 265 l~~ 267 (418)
T KOG2982|consen 265 LRG 267 (418)
T ss_pred ccC
Confidence 543
No 65
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.68 E-value=5.5e-05 Score=55.66 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=12.2
Q ss_pred ccCEEEEeCCCCCcccc--ccccCCCccEEEEe
Q 006902 485 SLHHVTIYSCTKLKDST--FLVFAPNLKSLTLF 515 (626)
Q Consensus 485 ~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~ 515 (626)
+|++|++++| .+..++ .+..+++|+.|+|+
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~ 33 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLS 33 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEET
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEcc
Confidence 3444444443 333333 13344444444444
No 66
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.68 E-value=6.6e-06 Score=84.51 Aligned_cols=59 Identities=32% Similarity=0.447 Sum_probs=49.1
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCc
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFS 373 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 373 (626)
.|..|.|+.|.+..+|..+++|..|.||||+.| .+..+|.. ++.|+ |+.|.+.+|....
T Consensus 99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~-lC~lp-Lkvli~sNNkl~~ 157 (722)
T KOG0532|consen 99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDG-LCDLP-LKVLIVSNNKLTS 157 (722)
T ss_pred HHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChh-hhcCc-ceeEEEecCcccc
Confidence 567778888888889999999999999999998 58889987 77775 8888888888653
No 67
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00031 Score=71.04 Aligned_cols=123 Identities=12% Similarity=0.173 Sum_probs=78.7
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHHh---hccCCCCeEEEEEe-cCccCHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKFL---ENQNNFDCVIWVVV-SKELRLEKIQEDIG 232 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~F~~~~wv~~-s~~~~~~~l~~~i~ 232 (626)
.+++|-+..++.+.+++..++. ....++|+.|+||||+|+.++.... ....|+|...|... +.....++ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 4578999999999999987654 5778999999999999999998652 12356676666542 22233333 22333
Q ss_pred HHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCC--CccccccccCCCCCCCCCCcEEEEecCCh
Q 006902 233 KKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIW--ERVDLTEVGVPLPSPQNTTSKVVFTTRFI 300 (626)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~--~~~~~~~l~~~~~~~~~~~s~iivTtr~~ 300 (626)
+.+.... ..+++-++|+|++. +...++.+...+. ....++.+|++|.+.
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LE-epp~~t~~il~~~~~ 133 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIE-EPPKGVFIILLCENL 133 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCCh
Confidence 3332211 11344455666653 4456777776666 556688888777644
No 68
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.0003 Score=70.02 Aligned_cols=112 Identities=25% Similarity=0.284 Sum_probs=65.8
Q ss_pred cccchHHHH---HHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHh
Q 006902 159 TIVGLQSQL---EQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKI 235 (626)
Q Consensus 159 ~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l 235 (626)
++||-+.-+ .-|..++..+.+.-.-+||++|+||||||+.+.... ...|. .+|-..+-.+=++++
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~gvkdlr~i---- 92 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTSGVKDLREI---- 92 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----EeccccccHHHHHHH----
Confidence 455554443 234556666778888899999999999999999876 44543 333322222222222
Q ss_pred CCCCCccCCcCHHHHHHHH-HHHhCCCcEEEEEeCCCCcc-ccccccCCCCCCCCCCcEEEE--ecCCh
Q 006902 236 GLFDDSWKNKSFEEKAVDI-LRRLGEKRFVLLLDDIWERV-DLTEVGVPLPSPQNTTSKVVF--TTRFI 300 (626)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l-~~~l~~k~~llvlDdv~~~~-~~~~l~~~~~~~~~~~s~iiv--Ttr~~ 300 (626)
.+.- .....+++.+|.+|.|..-+ .-++.. +| ...+|.-++| ||.+.
T Consensus 93 ---------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l--Lp-~vE~G~iilIGATTENP 143 (436)
T COG2256 93 ---------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDAL--LP-HVENGTIILIGATTENP 143 (436)
T ss_pred ---------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhh--hh-hhcCCeEEEEeccCCCC
Confidence 2222 22334899999999997542 122222 34 4456666654 66654
No 69
>PRK06893 DNA replication initiation factor; Validated
Probab=97.63 E-value=0.00016 Score=69.42 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVS 219 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s 219 (626)
....+.++|.+|+|||+||+.+++... .....+.|++++
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHH
Confidence 445789999999999999999999872 223356777654
No 70
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.62 E-value=0.00021 Score=73.23 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=41.3
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|++..++.+.+++..+....+-++|..|+||||+|+.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999988776678899999999999999999876
No 71
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.59 E-value=0.00018 Score=75.62 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=39.6
Q ss_pred CcccchHHHHHH---HHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQ---VWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++||.+..+.. +.+++..+....+.++|++|+||||+|+.+.+..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457898888666 8888887777788899999999999999999876
No 72
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.00056 Score=74.48 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHHhcCC-CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.|.+++..++ ...+-++|..|+||||+|+.+.+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467999999999999998876 4566799999999999999988876
No 73
>PRK08727 hypothetical protein; Validated
Probab=97.51 E-value=0.00041 Score=66.69 Aligned_cols=57 Identities=21% Similarity=0.159 Sum_probs=38.1
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 006902 159 TIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVV 218 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 218 (626)
.++|-...+..+.....+.....+.|+|..|+|||+|++.+++... +....+.|+++
T Consensus 21 f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~ 77 (233)
T PRK08727 21 YIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPL 77 (233)
T ss_pred ccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeH
Confidence 3344444455544444444456799999999999999999999872 33335667754
No 74
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.46 E-value=0.00043 Score=67.62 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=73.1
Q ss_pred cccchHHHHH---HHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHh
Q 006902 159 TIVGLQSQLE---QVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKI 235 (626)
Q Consensus 159 ~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l 235 (626)
+.||.++.+. -|.+++..+.+..+.+||++|+||||||+.+.+.. +.+- ..||..|-...-..-.+.|.++.
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHH
Confidence 3455544332 35556667788899999999999999999999876 2321 56777666544444445555433
Q ss_pred CCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc-ccccccCCCCCCCCCCcEEEE--ecCChH
Q 006902 236 GLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWERV-DLTEVGVPLPSPQNTTSKVVF--TTRFID 301 (626)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~-~~~~l~~~~~~~~~~~s~iiv--Ttr~~~ 301 (626)
.. ...+..+|.+|.+|.|..-+ .-+++ .+| ...+|.-++| ||.+.+
T Consensus 214 q~-----------------~~~l~krkTilFiDEiHRFNksQQD~--fLP-~VE~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 214 QN-----------------EKSLTKRKTILFIDEIHRFNKSQQDT--FLP-HVENGDITLIGATTENPS 262 (554)
T ss_pred HH-----------------HHhhhcceeEEEeHHhhhhhhhhhhc--ccc-eeccCceEEEecccCCCc
Confidence 21 12345788999999996432 12222 245 5566766554 666543
No 75
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.43 E-value=0.00036 Score=77.51 Aligned_cols=46 Identities=37% Similarity=0.494 Sum_probs=38.2
Q ss_pred CcccchHHHHH---HHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLE---QVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789888774 56677777777778899999999999999999876
No 76
>PRK08118 topology modulation protein; Reviewed
Probab=97.43 E-value=9.8e-05 Score=66.89 Aligned_cols=35 Identities=34% Similarity=0.655 Sum_probs=28.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhcc-CCCCeEEE
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQ-NNFDCVIW 215 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~w 215 (626)
+.|.|+|++|+||||||+.+++.. ... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhc
Confidence 358899999999999999999988 433 56776765
No 77
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.42 E-value=0.0011 Score=67.48 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=41.4
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|+++.++.+..++.......+-++|..|+||||+|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999988777778999999999999999999876
No 78
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.41 E-value=0.00047 Score=70.18 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=39.5
Q ss_pred CcccchHHHHHHHHHHHhc-----CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|+|+++.++.+..++.. .....+.|+|++|+||||+|+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 5689999999998888753 345678899999999999999999987
No 79
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.40 E-value=0.00038 Score=64.55 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=33.9
Q ss_pred CcccchHHHHHHHHHHHh-----cCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLA-----EESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++|||-++-++.+.-++. ++...-+-+||++|+||||||..+.+..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 578999988888655554 2356778899999999999999999977
No 80
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.39 E-value=0.00014 Score=49.07 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=32.7
Q ss_pred cccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCc
Q 006902 334 VNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFS 373 (626)
Q Consensus 334 ~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 373 (626)
++|++|++++| .++.+|.. +++|++|++|++++|.+..
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~-l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE-LSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH-GTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcccCch-HhCCCCCCEEEecCCCCCC
Confidence 47999999999 69999997 9999999999999998753
No 81
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0016 Score=67.15 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=40.3
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+.+.+..++. ..+-++|+.|+||||+|+.+.+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 5679999999999999987654 567899999999999999999876
No 82
>PLN03025 replication factor C subunit; Provisional
Probab=97.37 E-value=0.00098 Score=67.55 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=40.0
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-++.++.|.+++..+...-+-++|++|+||||+|+.+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999989999888887766667899999999999999999876
No 83
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.35 E-value=7.1e-05 Score=72.69 Aligned_cols=140 Identities=21% Similarity=0.143 Sum_probs=72.4
Q ss_pred CCccccccccccccc-----ccchHHhhhcccchhcccCCCCccccchhh-------------hcCCCcccEEEccCCCC
Q 006902 310 GSSLELLDISHTYIQ-----ELPEELKLLVNLKCLNLRGTGQLNKIPRQL-------------ISKFSRLRVLRMLGTGP 371 (626)
Q Consensus 310 H~~Lr~L~L~~~~i~-----~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~-------------i~~L~~L~~L~l~~~~~ 371 (626)
|.+|++||||.|.+. .+-+-|..+..|+.|.|.+|. +....-+. +.+=++|+++...+|..
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 457888888888442 333456667778888888883 44222111 23345677777766654
Q ss_pred CcccCCCCcccccCCccchhHHhhccCCCceEEEEEec--hhhHHHHhhccccccceeEEEEeccCCCc--ccccccccc
Q 006902 372 FSFDEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS--YHALQILLSSNKLKSCIRSLFLWLAGDAT--SIVDATAFA 447 (626)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~ 447 (626)
... +-...-..++..+.|+.+.+..+. ..+...+......+++|+.|+|.++.-.. ...-...++
T Consensus 170 en~-----------ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 170 ENG-----------GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred ccc-----------cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 311 011233344555666666655332 22233344444456666777666553211 110112344
Q ss_pred ccccccceeecccC
Q 006902 448 DLNHLNELWIYRGF 461 (626)
Q Consensus 448 ~~~~L~~L~l~~~~ 461 (626)
..++|++|+++.|.
T Consensus 239 s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 239 SWPHLRELNLGDCL 252 (382)
T ss_pred ccchheeecccccc
Confidence 55566666666553
No 84
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=0.00013 Score=80.51 Aligned_cols=130 Identities=21% Similarity=0.216 Sum_probs=85.5
Q ss_pred cccccccccccc--cccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 312 SLELLDISHTYI--QELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 312 ~Lr~L~L~~~~i--~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.|+.|.+++..+ .++-.-..++++|+.||+++| .++.+ .+ |++|+|||+|.+++-.+. ...
T Consensus 149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~G-IS~LknLq~L~mrnLe~e--------------~~~ 211 (699)
T KOG3665|consen 149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SG-ISRLKNLQVLSMRNLEFE--------------SYQ 211 (699)
T ss_pred ccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HH-HhccccHHHHhccCCCCC--------------chh
Confidence 677777777644 234455567788999999998 57877 55 899999999988876654 335
Q ss_pred hhHHhhccCCCceEEEEEech----hhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecc
Q 006902 390 LIQELLGLKYLEVLELTLGSY----HALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYR 459 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~----~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 459 (626)
.+.+|-+|++|+.|+|+.... ..+....+....+++|+.|+.++..-...+ .-.-+..+++|+.+.+-+
T Consensus 212 ~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~-le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 212 DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI-LEELLNSHPNLQQIAALD 284 (699)
T ss_pred hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH-HHHHHHhCccHhhhhhhh
Confidence 677888899999998875432 223344455555678888888765433222 111334556666665543
No 85
>PLN03150 hypothetical protein; Provisional
Probab=97.31 E-value=0.00023 Score=78.77 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=66.4
Q ss_pred cccccccccccc-ccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 313 LELLDISHTYIQ-ELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 313 Lr~L~L~~~~i~-~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+..|+|+++.+. .+|..++.|.+|++|+|++|.....+|.. ++.|++|++|++.+|.+.+ ..+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg---------------~iP 483 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNG---------------SIP 483 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCC---------------CCc
Confidence 567888888876 68899999999999999999433478887 8999999999999988643 566
Q ss_pred HHhhccCCCceEEEEEech
Q 006902 392 QELLGLKYLEVLELTLGSY 410 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~ 410 (626)
..+++|++|+.|++..+..
T Consensus 484 ~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 484 ESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred hHHhcCCCCCEEECcCCcc
Confidence 7788899999888876543
No 86
>PRK08116 hypothetical protein; Validated
Probab=97.29 E-value=0.00042 Score=67.89 Aligned_cols=102 Identities=24% Similarity=0.258 Sum_probs=58.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhC
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLG 259 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (626)
..+.++|..|+|||.||.++++... ..-..+++++ ..+++..+........ ... ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSG----KED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccc----ccc----HHHHHHHhc
Confidence 4588999999999999999999882 2233456664 4455666655443211 111 122344455
Q ss_pred CCcEEEEEeCCCC--cccccc--ccCCCCCCCCCCcEEEEecCC
Q 006902 260 EKRFVLLLDDIWE--RVDLTE--VGVPLPSPQNTTSKVVFTTRF 299 (626)
Q Consensus 260 ~k~~llvlDdv~~--~~~~~~--l~~~~~~~~~~~s~iivTtr~ 299 (626)
+-. +||+||+.. ..+|.. +...+..-...+..+||||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 789999943 344432 211111001235568888863
No 87
>PRK04195 replication factor C large subunit; Provisional
Probab=97.27 E-value=0.0011 Score=71.23 Aligned_cols=46 Identities=30% Similarity=0.458 Sum_probs=40.3
Q ss_pred CcccchHHHHHHHHHHHhcC----CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEE----SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++.++.+.+|+..- ..+.+-|+|++|+||||+|+.+.+..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899999999999998742 26789999999999999999999876
No 88
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.26 E-value=7.4e-05 Score=78.79 Aligned_cols=102 Identities=26% Similarity=0.270 Sum_probs=70.0
Q ss_pred CcccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 311 SSLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
..|.+|++.++.|+.+...+..+.+|++|++++| .|..+.. +..|..|+.|++.+|.+..
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N~i~~----------------- 154 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGNLISD----------------- 154 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhheeccCcchh-----------------
Confidence 3678888888888888766888888999999888 6888877 7888888888888887642
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLA 434 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 434 (626)
+.++..++.|+.+++..+....++... ...+..++.+.+.+.
T Consensus 155 ~~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 155 ISGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGN 196 (414)
T ss_pred ccCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCC
Confidence 334455677777776665554444420 112445555555544
No 89
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0012 Score=73.41 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=40.3
Q ss_pred CcccchHHHHHHHHHHHhcCCCe-EEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.|.+++..+++. .+-++|..|+||||+|+.+.+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56899999999999999887654 45899999999999999999877
No 90
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.25 E-value=0.0033 Score=61.26 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=75.5
Q ss_pred CcccchHH---HHHHHHHHHhcC---CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCC----eEEEEEecCccCHHHH
Q 006902 158 PTIVGLQS---QLEQVWRCLAEE---SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFD----CVIWVVVSKELRLEKI 227 (626)
Q Consensus 158 ~~~vGr~~---~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~----~~~wv~~s~~~~~~~l 227 (626)
+..+|... .++++.++|... +..-+.|||.+|.|||++++.+...+ -....-+ .++.|.....++...+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEEecCCCCChHHH
Confidence 45566543 344455555432 44568999999999999999999877 3221111 4777888889999999
Q ss_pred HHHHHHHhCCCCCccCCcCHHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 006902 228 QEDIGKKIGLFDDSWKNKSFEEKAVDILRRLGE-KRFVLLLDDIWE 272 (626)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~llvlDdv~~ 272 (626)
...|+.+++.+.. ...............++. +--+||+|++.+
T Consensus 113 Y~~IL~~lgaP~~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 113 YSAILEALGAPYR--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHhCcccC--CCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 9999999998765 233444444444444432 344789999965
No 91
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.0038 Score=63.50 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=78.9
Q ss_pred CCcccchHHHHHHHHHHHhc----CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIG 232 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~ 232 (626)
+..++||+.+++.+.+|+.. ...+.+-|.|-+|.|||.+...++.+...-... ..++++....-.....+...|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 46789999999999999875 367788899999999999999999988311111 2346666665556777777777
Q ss_pred HHhCCCCCccCCcCHHHHHHHHHHHhCCC--cEEEEEeCCCCc
Q 006902 233 KKIGLFDDSWKNKSFEEKAVDILRRLGEK--RFVLLLDDIWER 273 (626)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k--~~llvlDdv~~~ 273 (626)
..+-.... ......+....+..+.... .+++|+|.+...
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 76621111 1112255566677766543 588999998653
No 92
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0019 Score=68.51 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=39.8
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..+..+...+..+.. ..+-++|++|+||||+|+.+.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999988888888887765 467899999999999999998876
No 93
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0018 Score=69.44 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=39.8
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+...+..++. ..+-++|+.|+||||+|+.+.+..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999987654 557889999999999999999866
No 94
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0021 Score=69.38 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=40.7
Q ss_pred CcccchHHHHHHHHHHHhcCC-CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.|.+++..++ ...+-++|+.|+||||+|+.+.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467999999999999998876 4577899999999999999998876
No 95
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.21 E-value=0.0053 Score=67.09 Aligned_cols=131 Identities=20% Similarity=0.181 Sum_probs=87.3
Q ss_pred CcccchHHHHHHHHHHHhcC-CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-cCHHHHHHHHHHHh
Q 006902 158 PTIVGLQSQLEQVWRCLAEE-SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-LRLEKIQEDIGKKI 235 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~l~~~i~~~l 235 (626)
.+.|-|. ++++.|... +.+.+-|..++|.|||||+-+..... ..=..+.|.+.+.. .++..+...++..+
T Consensus 19 ~~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 19 DNYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred ccccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 3445554 456666654 78999999999999999999998733 33346899998765 47888888888887
Q ss_pred CCCCCcc-----------CCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCcc------ccccccCCCCCCCCCCcEEEEe
Q 006902 236 GLFDDSW-----------KNKSFEEKAVDILRRLG--EKRFVLLLDDIWERV------DLTEVGVPLPSPQNTTSKVVFT 296 (626)
Q Consensus 236 ~~~~~~~-----------~~~~~~~~~~~l~~~l~--~k~~llvlDdv~~~~------~~~~l~~~~~~~~~~~s~iivT 296 (626)
+.-.+.. ...+...+...+..-+. .+++.+|+||..-.. ....+....| .+-.+|||
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P----~~l~lvv~ 166 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP----ENLTLVVT 166 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC----CCeEEEEE
Confidence 6322211 12234445555555554 468999999986432 1233333333 57789999
Q ss_pred cCCh
Q 006902 297 TRFI 300 (626)
Q Consensus 297 tr~~ 300 (626)
||+.
T Consensus 167 SR~r 170 (894)
T COG2909 167 SRSR 170 (894)
T ss_pred eccC
Confidence 9974
No 96
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.0026 Score=68.41 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=40.6
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++||-+..++.|.+++..++. ..+-++|..|+||||+|+.+.+..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999988764 467899999999999999998877
No 97
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.18 E-value=0.0005 Score=71.09 Aligned_cols=46 Identities=28% Similarity=0.410 Sum_probs=38.6
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|+++.++++.+.+.. ...+-+.++|++|+|||++|+.+++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999888742 124568999999999999999999876
No 98
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0025 Score=69.32 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=39.9
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++||-+..++.|.+++..++. ..+-++|..|+||||+|+.+.+..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999988765 567899999999999999997766
No 99
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.16 E-value=3.5e-05 Score=81.26 Aligned_cols=123 Identities=24% Similarity=0.241 Sum_probs=91.0
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
.++.++++.+.+...-..++.+++|.+|++.++ .++.+... +..+++|++|+++++.+.. +
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~-l~~~~~L~~L~ls~N~I~~-----------------i 133 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENL-LSSLVNLQVLDLSFNKITK-----------------L 133 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccc-hhhhhcchheecccccccc-----------------c
Confidence 455667778877775556888999999999999 68888875 7889999999999998753 3
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCcccccccc--ccccccccceeecccC
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATA--FADLNHLNELWIYRGF 461 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~ 461 (626)
..+..|+.|+.|++..+....+..+.. +..|+.+++.++... .... +..+.+|+.+.+.+..
T Consensus 134 ~~l~~l~~L~~L~l~~N~i~~~~~~~~----l~~L~~l~l~~n~i~----~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 134 EGLSTLTLLKELNLSGNLISDISGLES----LKSLKLLDLSYNRIV----DIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cchhhccchhhheeccCcchhccCCcc----chhhhcccCCcchhh----hhhhhhhhhccchHHHhccCCc
Confidence 446777778888888777666555544 567788888776433 2233 4677788888887644
No 100
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.16 E-value=0.0013 Score=62.49 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=30.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVV 218 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 218 (626)
.+.|+|..|.||||++..+.... ...|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 57899999999999999999876 789988777754
No 101
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.15 E-value=0.0015 Score=66.22 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=39.9
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++..+.+.+++..+.. .++-++|.+|+||||+|+.+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 5679999999999999987654 567779999999999999998865
No 102
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.00036 Score=74.47 Aligned_cols=46 Identities=26% Similarity=0.231 Sum_probs=40.2
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.|..++..+.. ..+.++|+.|+||||+|+.+.+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999988764 456999999999999999999887
No 103
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.012 Score=63.08 Aligned_cols=51 Identities=31% Similarity=0.410 Sum_probs=43.8
Q ss_pred CCcccchHHHHHHHHHHHhc------CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCC
Q 006902 157 EPTIVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNF 210 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F 210 (626)
+.+-+|.++.+++|+++|.- -.-.++.+||++|||||.|++.+.... .+.|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf 378 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF 378 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE
Confidence 45669999999999999973 245799999999999999999999987 5665
No 104
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.11 E-value=0.00071 Score=68.98 Aligned_cols=115 Identities=16% Similarity=0.226 Sum_probs=71.9
Q ss_pred ccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccc-cccCCCccEEEEeccCcccccc
Q 006902 446 FADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF-LVFAPNLKSLTLFDCGAMEEII 524 (626)
Q Consensus 446 l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~L~~L~~L~L~~~~~l~~i~ 524 (626)
+..+.++..|.|++| .++.+ | . ..++|++|.+.+|..+..+|. + .++|+.|.|.+|..+..++
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sL-P---~---------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESL-P---V---------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCccc-C---C---------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 445688999999988 55544 2 1 235799999999988888774 3 3689999999987665443
Q ss_pred ccCccccccccCCCCCcCCccceeecCC--ccccccccCCCCCCCCccEEEecCCCCC--CCCCCCCCcCcCcceEEecc
Q 006902 525 SVGKIAETPEMMGHISPFENLQMLHLSY--LPILKSIYWKPLPFTHLKEMEVSGCNQL--EKHPLDSNSAKERKVVIRGD 600 (626)
Q Consensus 525 ~~~~~~~~~~~~~~~~~fp~L~~L~l~~--~~~l~~i~~~~~~lp~L~~L~i~~C~~L--~~lP~~~~~~l~~l~~~~~~ 600 (626)
++|+.|.+.+ |..+..+| ++|++|.+.++... ..+|..+...|+.|.+..|.
T Consensus 112 ------------------~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 112 ------------------ESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS 167 (426)
T ss_pred ------------------cccceEEeCCCCCcccccCc------chHhheeccccccccccccccccCCcccEEEecCCC
Confidence 3577777753 22344333 46888888543322 22332222346666665443
No 105
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.023 Score=59.99 Aligned_cols=40 Identities=33% Similarity=0.509 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVV 218 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 218 (626)
...+++|+|.+|+||||++..+.... ..+.....+..++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdt 388 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTT 388 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEec
Confidence 35799999999999999999988766 22222234555554
No 106
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.0031 Score=67.54 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=40.3
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++||-+..++.+.+++..++. ..+-++|+.|+||||+|+.+....
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999988764 457899999999999999998877
No 107
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.09 E-value=0.0017 Score=56.64 Aligned_cols=89 Identities=25% Similarity=0.099 Sum_probs=50.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhC
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLG 259 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (626)
..+.|+|.+|+||||+|+.+.... ......++++..+........... ........ ...........+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHHH
Confidence 578999999999999999999877 232234566655544322222211 00111110 12223333344444444
Q ss_pred CC-cEEEEEeCCCCccc
Q 006902 260 EK-RFVLLLDDIWERVD 275 (626)
Q Consensus 260 ~k-~~llvlDdv~~~~~ 275 (626)
.. ..++++|++.....
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 44 48999999987643
No 108
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.013 Score=62.84 Aligned_cols=65 Identities=22% Similarity=0.348 Sum_probs=50.4
Q ss_pred CCcccchHHHHHHHHHHHhc------CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKI 227 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l 227 (626)
+.+-+|+++.+++|++++.- -+-+++..+|++|||||.+|+.|.... .+.| +-++|..-.|..+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEI 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhh
Confidence 35569999999999999974 267899999999999999999999987 4555 23455555554443
No 109
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.06 E-value=0.0035 Score=68.29 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=40.6
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.|.+++..++. ..+-++|..|+||||+|+.+....
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999999999998764 568999999999999999998865
No 110
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.06 E-value=0.002 Score=73.67 Aligned_cols=46 Identities=24% Similarity=0.414 Sum_probs=40.8
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++||+++++.+++.|......-+.++|.+|+|||++|+.+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999987665566799999999999999998876
No 111
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.06 E-value=0.011 Score=67.42 Aligned_cols=47 Identities=32% Similarity=0.399 Sum_probs=39.4
Q ss_pred CCcccchHHHHHHHHHHHhc------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+..++|.++.++.|.+++.. ....++.++|++|+|||++|+.+.+..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999987752 134579999999999999999999977
No 112
>PRK10536 hypothetical protein; Provisional
Probab=97.06 E-value=0.004 Score=59.46 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=40.8
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEE
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVI 214 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~ 214 (626)
..+.++......+..+|.+. .++.+.|..|.|||+||.++..+. -....|+.++
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIi 108 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRII 108 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEE
Confidence 34577888888888888764 499999999999999999988864 2234455433
No 113
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.03 E-value=0.0029 Score=72.38 Aligned_cols=46 Identities=20% Similarity=0.394 Sum_probs=41.2
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++||+.++.++++.|......-+.++|.+|+|||++|+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999988776677799999999999999999876
No 114
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.02 E-value=0.0055 Score=65.33 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=39.8
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..+..+...+..++. ..+-++|+.|+||||+|+.+++..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999888877654 578899999999999999999877
No 115
>PLN03150 hypothetical protein; Provisional
Probab=97.00 E-value=0.00092 Score=74.06 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=63.1
Q ss_pred ccCccCEEEEeCCCCCcccc-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcccccccc
Q 006902 482 VFRSLHHVTIYSCTKLKDST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIY 560 (626)
Q Consensus 482 ~l~~L~~L~L~~c~~l~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~ 560 (626)
.+++|+.|+|++|.....+| .++.+++|+.|+|++|.....++. .++.+++|+.|+|+++.--..+|
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~------------~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE------------SLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch------------HHhcCCCCCEEECcCCcccccCC
Confidence 67888888888875555666 478888888888888754444444 45678888888888766555666
Q ss_pred CCCCC-CCCccEEEecCCCCCCCCC
Q 006902 561 WKPLP-FTHLKEMEVSGCNQLEKHP 584 (626)
Q Consensus 561 ~~~~~-lp~L~~L~i~~C~~L~~lP 584 (626)
..... +.++..+.+.+++.+...|
T Consensus 508 ~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 508 AALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred hHHhhccccCceEEecCCccccCCC
Confidence 54433 3456777777776666554
No 116
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.00 E-value=0.00014 Score=80.23 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=14.1
Q ss_pred cccccccccccc--cccchHHh-hhcccchhcccC
Q 006902 312 SLELLDISHTYI--QELPEELK-LLVNLKCLNLRG 343 (626)
Q Consensus 312 ~Lr~L~L~~~~i--~~LP~~i~-~L~~L~~L~l~~ 343 (626)
+|++||++|... ..-|..+| .|++|+.|.+++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~ 157 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG 157 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecC
Confidence 555555555421 23334443 234455555544
No 117
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.00 E-value=0.00017 Score=77.96 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=18.3
Q ss_pred cceeecCCccccccccCCCC--CCCCccEEEecCCCCCCC
Q 006902 545 LQMLHLSYLPILKSIYWKPL--PFTHLKEMEVSGCNQLEK 582 (626)
Q Consensus 545 L~~L~l~~~~~l~~i~~~~~--~lp~L~~L~i~~C~~L~~ 582 (626)
|+.|.+..|.....-..... .+.++..+.+.+|+....
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 56666666555443221111 144555555655555543
No 118
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.0054 Score=63.43 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=39.3
Q ss_pred CcccchHHHHHHHHHHHhcCC----------CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEES----------AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+.+++..+. ...+-++|+.|+|||++|+.+....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467899999999999998753 4567899999999999999998765
No 119
>PRK05642 DNA replication initiation factor; Validated
Probab=96.97 E-value=0.0018 Score=62.21 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVS 219 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s 219 (626)
...+.|+|..|+|||.|++.+++.. . ..-..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~-~--~~~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF-E--QRGEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCcEEEeeHH
Confidence 3678899999999999999999876 2 222356777653
No 120
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.003 Score=66.01 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHHhcCCCe-EEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+.+++.+++.. .+-++|+.|+||||+|+.+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999887654 57899999999999999998877
No 121
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.97 E-value=0.0037 Score=61.36 Aligned_cols=45 Identities=24% Similarity=0.247 Sum_probs=34.1
Q ss_pred cccchHHHHHHHHHHHhc---------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 159 TIVGLQSQLEQVWRCLAE---------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~---------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++|.+..++.|.+.... ....-+.++|++|+||||+|+.+++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 478998888776544321 134457789999999999999998876
No 122
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.97 E-value=0.00016 Score=78.24 Aligned_cols=121 Identities=19% Similarity=0.061 Sum_probs=64.5
Q ss_pred hhcccchhcccCCCCccc--cchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCceEEEEEec
Q 006902 332 LLVNLKCLNLRGTGQLNK--IPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 409 (626)
Q Consensus 332 ~L~~L~~L~l~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~ 409 (626)
.+.+|+.|.+.+|..+.. +-. +....++|+.|++.++....... ..........+++|+.|++....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~----------~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITLS----------PLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHH-HHhhCchhheecccCcccccccc----------hhHhhhhhhhcCCcCccchhhhh
Confidence 357778888877765554 222 26777888888887631110000 11122344455667766665443
Q ss_pred hhhHHHHhhccccccceeEEEEeccCCCccccccc-cccccccccceeecccCCcc
Q 006902 410 YHALQILLSSNKLKSCIRSLFLWLAGDATSIVDAT-AFADLNHLNELWIYRGFELE 464 (626)
Q Consensus 410 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~l~ 464 (626)
...-..+......+++|+.|.+.+|...... .+. -...+++|++|+|++|..+.
T Consensus 255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 255 LVTDIGLSALASRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred ccCchhHHHHHhhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccch
Confidence 1111122222222567788877766643222 222 23356678888888777763
No 123
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.034 Score=61.44 Aligned_cols=105 Identities=20% Similarity=0.312 Sum_probs=65.6
Q ss_pred CcccchHHHHHHHHHHHhc---------CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE---------ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQ 228 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~ 228 (626)
..++|-++.++.+.+.+.. ....+.-.+|+.|||||.||+++.... -..=+..+-++.|.-...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~Ek---- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEK---- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHH----
Confidence 5679999999999998863 245678889999999999999998866 111134444444432221
Q ss_pred HHHHHHhCCCCCccCCcCHHHHHHHHHHHhCCCcE-EEEEeCCCCc
Q 006902 229 EDIGKKIGLFDDSWKNKSFEEKAVDILRRLGEKRF-VLLLDDIWER 273 (626)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-llvlDdv~~~ 273 (626)
..+.+-+|.+ +++-..+. ...+-+..+.++| ++.||++...
T Consensus 564 HsVSrLIGaP-PGYVGyee---GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 564 HSVSRLIGAP-PGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHhCCC-CCCceecc---ccchhHhhhcCCCeEEEechhhhc
Confidence 1222233332 22221111 2345666778888 7778999764
No 124
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.91 E-value=0.0033 Score=71.71 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=41.4
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++||++++.++++.|......-+.++|.+|+||||+|+.+....
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999988766677799999999999999999876
No 125
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.0071 Score=63.98 Aligned_cols=46 Identities=26% Similarity=0.264 Sum_probs=39.6
Q ss_pred CcccchHHHHHHHHHHHhcCCCe-EEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++||-+..++.+.+.+..++.. .+-++|+.|+||||+|+.+....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 56799999999999888877654 78899999999999999988754
No 126
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.0033 Score=65.79 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=40.5
Q ss_pred CcccchHHHHHHHHHHHhcCCCe-EEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..+..|..++..++.. .+-++|+.|+||||+|+.+.+..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999887754 67899999999999999998876
No 127
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.89 E-value=0.0044 Score=66.67 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=40.3
Q ss_pred CcccchHHHHHHHHHHHhcCC-CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+++..++ ...+-++|+.|+||||+|+.+.+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467999999999999998765 4578899999999999999998876
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.88 E-value=0.0047 Score=69.88 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=40.9
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++||+++++++++.|......-+.++|.+|+|||++|+.+....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987766667799999999999999999876
No 129
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.88 E-value=0.0094 Score=61.58 Aligned_cols=46 Identities=13% Similarity=0.240 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+++..+.. ..+-++|..|+||||+|+.+....
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999987654 567899999999999999998876
No 130
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.87 E-value=0.009 Score=56.38 Aligned_cols=46 Identities=24% Similarity=0.438 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHH----hcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCL----AEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++|.+..++.|++-- .+....-+-++|..|.|||++++++.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 67899999988876544 34566778889999999999999999988
No 131
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.0086 Score=64.65 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=40.0
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+..++..++. ..+-++|..|+||||+|+.+....
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999988765 456899999999999999998776
No 132
>CHL00181 cbbX CbbX; Provisional
Probab=96.86 E-value=0.01 Score=58.79 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=33.6
Q ss_pred CcccchHHHHHHHHHHHh---c------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLA---E------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..+++|.++.. - .....+.++|.+|+||||+|+.+++..
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 457888877776655532 1 122347789999999999999998876
No 133
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.86 E-value=0.002 Score=55.68 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|-|+|..|+||||+|+.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999987
No 134
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.0039 Score=68.00 Aligned_cols=46 Identities=24% Similarity=0.285 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++||-+..++.|.+.+..++. ..+-++|..|+||||+|+.+.+..
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999988765 456899999999999999998877
No 135
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.13 Score=52.55 Aligned_cols=89 Identities=22% Similarity=0.277 Sum_probs=51.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK-ELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILR 256 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (626)
...++.++|+.|+||||++..+.... ..+.....+..++... .....+-++...+.++.+... ..+..+.... ..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~-l~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLA-LA 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHH-HH
Confidence 35789999999999999999999876 2222223456665333 223445556666666665431 1222222222 23
Q ss_pred HhCCCcEEEEEeCCC
Q 006902 257 RLGEKRFVLLLDDIW 271 (626)
Q Consensus 257 ~l~~k~~llvlDdv~ 271 (626)
.+.++. ++++|..-
T Consensus 212 ~l~~~D-lVLIDTaG 225 (374)
T PRK14722 212 ELRNKH-MVLIDTIG 225 (374)
T ss_pred HhcCCC-EEEEcCCC
Confidence 445554 45578764
No 136
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.83 E-value=0.0018 Score=65.05 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=41.2
Q ss_pred CcccchHHHHHHHHHHHhc------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.++.++++++++.. ...+++.++|++|.||||||+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999975 246889999999999999999999988
No 137
>PRK07261 topology modulation protein; Provisional
Probab=96.81 E-value=0.0026 Score=57.94 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998765
No 138
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.81 E-value=0.013 Score=66.14 Aligned_cols=47 Identities=30% Similarity=0.361 Sum_probs=40.8
Q ss_pred CCcccchHHHHHHHHHHHhc------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.+.+|.++.+++|+++|.. ....++.++|++|+||||+|+.+....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999873 245689999999999999999999876
No 139
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.0074 Score=62.59 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=40.3
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+++..+.. ..+-++|+.|+||||+|+.+.+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999987654 578899999999999999997765
No 140
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.80 E-value=0.0073 Score=60.98 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=64.8
Q ss_pred HHHHHHHhc-CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCe-EEEEEecCc-cCHHHHHHHHHHHhCCCCCccCC
Q 006902 168 EQVWRCLAE-ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDC-VIWVVVSKE-LRLEKIQEDIGKKIGLFDDSWKN 244 (626)
Q Consensus 168 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~~~ 244 (626)
.++++.+.. +.-.-+.|+|..|+|||||++.+.+... ..+-+. ++|+.+.+. .+..++.+.+...+..+..+...
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 346666664 3445679999999999999999998772 233344 467666665 46788888887766543211011
Q ss_pred cC---HHHHHHHHHHHh--CCCcEEEEEeCCCC
Q 006902 245 KS---FEEKAVDILRRL--GEKRFVLLLDDIWE 272 (626)
Q Consensus 245 ~~---~~~~~~~l~~~l--~~k~~llvlDdv~~ 272 (626)
.. .......+.+++ +++..+||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 111222233333 58999999999954
No 141
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.79 E-value=0.0057 Score=63.64 Aligned_cols=46 Identities=30% Similarity=0.412 Sum_probs=38.6
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|+++.++++.+.+.. ...+-|.++|++|+|||++|+.+++..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 4678999999999887742 235668899999999999999999876
No 142
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.78 E-value=0.23 Score=57.21 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=37.9
Q ss_pred CcccchHHHHHHHHHHHhcC---------CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.+..++.+...+... ...++.++|+.|+|||++|+.+.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999888887631 23578899999999999999999866
No 143
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.78 E-value=0.0012 Score=56.19 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
||.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 144
>PRK08181 transposase; Validated
Probab=96.77 E-value=0.0022 Score=62.54 Aligned_cols=78 Identities=23% Similarity=0.268 Sum_probs=46.6
Q ss_pred HHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHH
Q 006902 172 RCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKA 251 (626)
Q Consensus 172 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~ 251 (626)
+|+. ...-+.++|.+|+|||.||..+.+... ...-.++|++ ..++...+..... ......
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~-- 160 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLES-- 160 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHH--
Confidence 4554 345589999999999999999998772 2233456664 3455555543221 112222
Q ss_pred HHHHHHhCCCcEEEEEeCCCC
Q 006902 252 VDILRRLGEKRFVLLLDDIWE 272 (626)
Q Consensus 252 ~~l~~~l~~k~~llvlDdv~~ 272 (626)
..+.+. +--|||+||+..
T Consensus 161 --~l~~l~-~~dLLIIDDlg~ 178 (269)
T PRK08181 161 --AIAKLD-KFDLLILDDLAY 178 (269)
T ss_pred --HHHHHh-cCCEEEEecccc
Confidence 222222 334899999954
No 145
>PRK12377 putative replication protein; Provisional
Probab=96.77 E-value=0.011 Score=57.03 Aligned_cols=74 Identities=27% Similarity=0.292 Sum_probs=46.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRR 257 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (626)
....+.++|..|+|||+||.++.+... ...-.++++++. +++..+-....- .... ..+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~----~~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSG----EKFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchH----HHHHHH
Confidence 346789999999999999999999882 333345666443 455554443311 1111 123333
Q ss_pred hCCCcEEEEEeCCC
Q 006902 258 LGEKRFVLLLDDIW 271 (626)
Q Consensus 258 l~~k~~llvlDdv~ 271 (626)
+ .+--|||+||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 3 345589999994
No 146
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.75 E-value=0.068 Score=53.93 Aligned_cols=50 Identities=26% Similarity=0.381 Sum_probs=33.7
Q ss_pred HHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 006902 166 QLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVV 218 (626)
Q Consensus 166 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 218 (626)
.++....++.. .....+.++|..|+|||+||.++.+... ... ..++++++
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~ 219 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTA 219 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEH
Confidence 33334444442 2337799999999999999999999872 233 35666654
No 147
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.75 E-value=0.015 Score=53.95 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=28.7
Q ss_pred HHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 169 QVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 169 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+.+.+..++. ..+-++|..|+||||+|+.+....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45666666655 678899999999999999998876
No 148
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.70 E-value=0.0002 Score=75.90 Aligned_cols=103 Identities=23% Similarity=0.250 Sum_probs=73.6
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+|+.|+|++|.+...- .+..|.+|++|||+.| .+..+|.=-...+. |+.|.+++|.. ..+
T Consensus 188 ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l-----------------~tL 247 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNAL-----------------TTL 247 (1096)
T ss_pred HhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHH-----------------Hhh
Confidence 7888999999888775 8888999999999998 68888862123333 88999988865 345
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccC
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAG 435 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 435 (626)
.++.+|++|+.|+++.+-..+..++..... +..|+.|.|.++.
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLws-Ls~L~~L~LeGNP 290 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWS-LSSLIVLWLEGNP 290 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHH-HHHHHHHhhcCCc
Confidence 667888888888887654444444433222 4567788888764
No 149
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.70 E-value=0.0071 Score=58.22 Aligned_cols=60 Identities=25% Similarity=0.298 Sum_probs=40.1
Q ss_pred CcccchH-HHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 006902 158 PTIVGLQ-SQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK 220 (626)
Q Consensus 158 ~~~vGr~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 220 (626)
..++|.. ..+..+.++........+.|+|+.|+|||+|++.+++... ..-..+.++++..
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~ 83 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDK 83 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHH
Confidence 4445632 3444555555455567889999999999999999999772 2233466776643
No 150
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.69 E-value=0.0087 Score=57.34 Aligned_cols=89 Identities=21% Similarity=0.225 Sum_probs=53.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHH----hCCCCCccCCcCH---HHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKK----IGLFDDSWKNKSF---EEK 250 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~----l~~~~~~~~~~~~---~~~ 250 (626)
.-.++.|+|.+|+|||++|.++.... ...-..++|++.. .++.+.+.+ ++.. +.....-....+. .+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE-GLSPERFKQ-IAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC-CCCHHHHHH-HHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 46799999999999999999998876 2345678999887 555554432 2221 0000000011122 223
Q ss_pred HHHHHHHhCCCcEEEEEeCCC
Q 006902 251 AVDILRRLGEKRFVLLLDDIW 271 (626)
Q Consensus 251 ~~~l~~~l~~k~~llvlDdv~ 271 (626)
...+...+..+.-++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 334444444566788999873
No 151
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.67 E-value=0.099 Score=54.77 Aligned_cols=90 Identities=23% Similarity=0.217 Sum_probs=53.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCcc-CCcCHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-LRLEKIQEDIGKKIGLFDDSW-KNKSFEEKAVDIL 255 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 255 (626)
...+|.++|..|+||||+|..+.... . +..+ .+..+++... +...+-++.++..++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~-~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-K-KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45789999999999999999999877 3 2233 3444544321 233455666777776643211 1223333344444
Q ss_pred HHhCCCcEEEEEeCCC
Q 006902 256 RRLGEKRFVLLLDDIW 271 (626)
Q Consensus 256 ~~l~~k~~llvlDdv~ 271 (626)
+.+.+. -++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 444444 467888763
No 152
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.66 E-value=0.0083 Score=65.40 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=40.7
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.|.+++..++. ..+-++|+.|+||||+|+.+.+..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999988764 468899999999999999998876
No 153
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.64 E-value=0.01 Score=67.01 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=40.4
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.|..++..+++ ..+.++|..|+||||+|+.+.+..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999988765 467899999999999999998877
No 154
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.64 E-value=0.013 Score=58.02 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=32.6
Q ss_pred cccchHHHHHHHHHHHh---c-------C-----CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 159 TIVGLQSQLEQVWRCLA---E-------E-----SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~---~-------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++|.++.+++|.++.. - + ...-+.++|.+|+|||++|+.+....
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 57888877777655432 1 0 12247799999999999998888776
No 155
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.013 Score=63.48 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=40.4
Q ss_pred CcccchHHHHHHHHHHHhcCCCe-EEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.|.+++..++.. .+-++|+.|+||||+|+.+....
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999887654 57899999999999999999876
No 156
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.61 E-value=0.008 Score=56.85 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=54.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHh-CCCCCc------cCCcCHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKI-GLFDDS------WKNKSFEEK 250 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l-~~~~~~------~~~~~~~~~ 250 (626)
.-.++-|+|.+|+|||++|.++.... ...-..++|++... ++...+.+.. +.. ...... .+..+....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQIA-EDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHHHH-HhChHHHhcCEEEEECCCHHHHHHH
Confidence 46789999999999999999988766 24456899999876 6666555432 221 000000 011122223
Q ss_pred HHHHHHHhCC-CcEEEEEeCCC
Q 006902 251 AVDILRRLGE-KRFVLLLDDIW 271 (626)
Q Consensus 251 ~~~l~~~l~~-k~~llvlDdv~ 271 (626)
...+...+.. +.-++|+|.+.
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 4444444543 45588888874
No 157
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.59 E-value=0.0073 Score=64.14 Aligned_cols=46 Identities=33% Similarity=0.465 Sum_probs=37.9
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.+..++++.+.+.- ...+-+-++|++|.|||++|+.+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 4577899999998887642 134568899999999999999999987
No 158
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.014 Score=63.90 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+.+++..++. ..+-++|+.|+||||+|+.+.+..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999987765 458899999999999999998877
No 159
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.55 E-value=0.0037 Score=59.82 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=62.0
Q ss_pred HhhHHHHHhhhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006902 14 FNRCLDCFLGKAAYIRNLQDNLVALETELGRLIAAKNDVMMRVVNAERQQMRRLDGVQVWVSRVDSVKTGADELITDGS 92 (626)
Q Consensus 14 ~~~l~~~l~~~~~~~~~~~~~i~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~~~d~ed~ld~~~ 92 (626)
++.|-++.......+.-++.+++-++++++.+|.||+.+ +++++.+++. .+....++...||++|+++|-+.
T Consensus 302 L~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 302 LKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeeeeehhh
Confidence 666777777777778888999999999999999999997 7777766644 99999999999999999999874
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.53 E-value=0.0081 Score=69.10 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=40.6
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++||++++.++++.|......-+.++|.+|+|||++|+.+....
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999988766666789999999999999998876
No 161
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.019 Score=63.17 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=39.9
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.|..++..+.. ..+-++|..|+||||+|+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999987654 456899999999999999998876
No 162
>PRK06921 hypothetical protein; Provisional
Probab=96.49 E-value=0.0066 Score=59.45 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVV 218 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 218 (626)
....+.++|..|+|||+||.++.+... +..-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456789999999999999999999772 221344667654
No 163
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.49 E-value=0.031 Score=53.52 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCC------CeEEEEEecCccCHHHHHHHHHHHhCCCCCc-------cCC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNF------DCVIWVVVSKELRLEKIQEDIGKKIGLFDDS-------WKN 244 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F------~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-------~~~ 244 (626)
.-.++.|+|.+|.|||+||.++.... ...- ..++|++....++...+.+ +++........ ...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeC
Confidence 46799999999999999999987765 2233 5689999888777655543 33332221100 012
Q ss_pred cCHHHHHHHHHHHhC----CCcEEEEEeCCCC
Q 006902 245 KSFEEKAVDILRRLG----EKRFVLLLDDIWE 272 (626)
Q Consensus 245 ~~~~~~~~~l~~~l~----~k~~llvlDdv~~ 272 (626)
.+.++....+..... .+.-++|+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 234444444444432 3455889998853
No 164
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.016 Score=62.78 Aligned_cols=46 Identities=24% Similarity=0.288 Sum_probs=39.7
Q ss_pred CcccchHHHHHHHHHHHhcCC-CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.|.+++..++ ...+-++|+.|+||||+|+.+.+..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 467899988889999888775 4678889999999999999998877
No 165
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.018 Score=55.94 Aligned_cols=75 Identities=25% Similarity=0.339 Sum_probs=48.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRR 257 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (626)
+..-+.++|.+|+|||.||.++.+.. - +..+ .+.++ ...++..++...... ......+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l-~-~~g~-sv~f~------~~~el~~~Lk~~~~~----------~~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL-L-KAGI-SVLFI------TAPDLLSKLKAAFDE----------GRLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-H-HcCC-eEEEE------EHHHHHHHHHHHHhc----------CchHHHHHHH
Confidence 67778999999999999999999988 2 3333 35555 455666666655432 1111223332
Q ss_pred hCCCcEEEEEeCCCC
Q 006902 258 LGEKRFVLLLDDIWE 272 (626)
Q Consensus 258 l~~k~~llvlDdv~~ 272 (626)
+. +-=|||+||+-.
T Consensus 165 l~-~~dlLIiDDlG~ 178 (254)
T COG1484 165 LK-KVDLLIIDDIGY 178 (254)
T ss_pred hh-cCCEEEEecccC
Confidence 22 234789999854
No 166
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.014 Score=61.27 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=62.3
Q ss_pred CcccchHHHHHHHHHHHhc------------CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLE 225 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 225 (626)
.++-|.+..+.++.+++.. ...+-|-+.|++|.|||.||+++.+.. .| -++.++-.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~v-------Pf~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-GV-------PFLSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-CC-------ceEeecch----
Confidence 4567899999988888763 246678899999999999999999987 22 23333322
Q ss_pred HHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 006902 226 KIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWE 272 (626)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~ 272 (626)
+|+... ..++.+.+.+...+....-++++.+|++.-
T Consensus 258 ----eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ----EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ----hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 222221 334444444445555567899999999853
No 167
>PRK06696 uridine kinase; Validated
Probab=96.43 E-value=0.0057 Score=58.47 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHhc---CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 162 GLQSQLEQVWRCLAE---ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 162 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.+-+++|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777888888753 467899999999999999999999877
No 168
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.40 E-value=0.00037 Score=74.07 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=27.1
Q ss_pred cccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCC
Q 006902 316 LDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGP 371 (626)
Q Consensus 316 L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 371 (626)
-+.++|.+..+-.++.-+..|++|||++| ++..... +..|++|++||++.|..
T Consensus 169 a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~~--Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 169 ASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVDN--LRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred hhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhHH--HHhcccccccccccchh
Confidence 34444444444455555555555555555 3444432 55555555555555543
No 169
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.40 E-value=0.024 Score=53.85 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=66.8
Q ss_pred Ccccch-HHHHHHHHHHHhcC---CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHH
Q 006902 158 PTIVGL-QSQLEQVWRCLAEE---SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGK 233 (626)
Q Consensus 158 ~~~vGr-~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~ 233 (626)
..++|- .+..-...+.+.++ ....+-|+|..|+|||.|.+++++...+.... ..++++ +.+++...++.
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~-~~v~y~------~~~~f~~~~~~ 81 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPG-KRVVYL------SAEEFIREFAD 81 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTT-S-EEEE------EHHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcccc-ccceee------cHHHHHHHHHH
Confidence 344564 33333444444432 34568899999999999999999987321122 246666 44555666665
Q ss_pred HhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc---ccccc-cCCCCCCCCCCcEEEEecCC
Q 006902 234 KIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWERV---DLTEV-GVPLPSPQNTTSKVVFTTRF 299 (626)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~---~~~~l-~~~~~~~~~~~s~iivTtr~ 299 (626)
.+... . ...+.+.+++-. ++++||++... .|+.. ..-+-.....|.++|+|++.
T Consensus 82 ~~~~~-------~----~~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 82 ALRDG-------E----IEEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp HHHTT-------S----HHHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHcc-------c----chhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 55321 1 133445555443 57889997542 23222 11110011246689999863
No 170
>PRK09183 transposase/IS protein; Provisional
Probab=96.39 E-value=0.0063 Score=59.38 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....+.|+|..|+|||+||..+.+..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 34567799999999999999998875
No 171
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.39 E-value=0.0068 Score=62.84 Aligned_cols=46 Identities=26% Similarity=0.365 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.+..+++|.+.+.- ...+-+.++|++|.|||++|+.+.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 4678999999888877641 145678899999999999999999876
No 172
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.024 Score=62.33 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=39.9
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+..++..+.. ..+-++|..|+||||+|+.+....
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999988765 457899999999999999888765
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.39 E-value=0.018 Score=66.33 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=45.1
Q ss_pred CcccchHHHHHHHHHHHhcC---------CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 006902 158 PTIVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK 220 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 220 (626)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+.... ...-...+.++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 56899999999999988641 24578899999999999999999876 22223445555554
No 174
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.35 E-value=0.0045 Score=65.49 Aligned_cols=45 Identities=29% Similarity=0.462 Sum_probs=40.6
Q ss_pred cccchHHHHHHHHHHHh------cCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 159 TIVGLQSQLEQVWRCLA------EESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+++|.++.+++|++.|. +..-+++.++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 47999999999999993 3467899999999999999999999987
No 175
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.34 E-value=0.012 Score=58.74 Aligned_cols=86 Identities=21% Similarity=0.154 Sum_probs=56.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc---cCCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS---WKNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (626)
.-+++-|+|++|+||||||.+++-.. ...-..++|++....++.. .++.++.+.+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 46788999999999999999987766 2344568899887776653 34444443221 1222444555555
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 006902 255 LRRLG-EKRFVLLLDDIW 271 (626)
Q Consensus 255 ~~~l~-~k~~llvlDdv~ 271 (626)
...++ +.--++|+|.+-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 44443 345688999874
No 176
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.33 E-value=0.018 Score=60.04 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc
Q 006902 163 LQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW 242 (626)
Q Consensus 163 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~ 242 (626)
+..-..++.+.+..... ++.|.|+-++||||+++.+.... ... .+++...+......-+.+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l~d~----------- 83 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIELLDL----------- 83 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhHHHH-----------
Confidence 34455555666555444 99999999999999996665544 122 4555433321111111111
Q ss_pred CCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHH
Q 006902 243 KNKSFEEKAVDILRRLGEKRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVC 303 (626)
Q Consensus 243 ~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va 303 (626)
...+...-..++..++||.|....+|......+. +.++. +|++|+-+....
T Consensus 84 --------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~-d~~~~-~v~itgsss~ll 134 (398)
T COG1373 84 --------LRAYIELKEREKSYIFLDEIQNVPDWERALKYLY-DRGNL-DVLITGSSSSLL 134 (398)
T ss_pred --------HHHHHHhhccCCceEEEecccCchhHHHHHHHHH-ccccc-eEEEECCchhhh
Confidence 1111111122778999999999999998877776 66666 888888765544
No 177
>PRK06526 transposase; Provisional
Probab=96.33 E-value=0.0044 Score=60.09 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...-+.++|.+|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998876
No 178
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.0025 Score=60.81 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=52.0
Q ss_pred CCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccC--CCCCCCCccEEEecCCCCCCCC
Q 006902 506 APNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYW--KPLPFTHLKEMEVSGCNQLEKH 583 (626)
Q Consensus 506 L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~--~~~~lp~L~~L~i~~C~~L~~l 583 (626)
+||+..+-+..|+ ++.... +.....||.+-.|.+.. .++.+|.. ....||.|..|.+.+-|-+..+
T Consensus 198 Fpnv~sv~v~e~P-lK~~s~----------ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 198 FPNVNSVFVCEGP-LKTESS----------EKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cccchheeeecCc-ccchhh----------cccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 6777777777663 222211 11445678887787765 56666543 3456999999999998887766
Q ss_pred CCCCCc-----CcCcceEEecc
Q 006902 584 PLDSNS-----AKERKVVIRGD 600 (626)
Q Consensus 584 P~~~~~-----~l~~l~~~~~~ 600 (626)
-.+-.. .++++++..+.
T Consensus 266 ~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 266 RGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cCCcceEEEEeeccceEEecCc
Confidence 554322 34555555544
No 179
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.30 E-value=0.038 Score=52.55 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELR 223 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 223 (626)
.-.++.|.|.+|+||||+|.++.... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 46889999999999999999998766 23334678887665543
No 180
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.29 E-value=0.01 Score=54.41 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEE
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWV 216 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 216 (626)
...+|.+.|+.|+||||+|+.+++.. ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45689999999999999999999988 3455555555
No 181
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.29 E-value=0.0055 Score=57.29 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=61.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHH---HHHHHhCCCCCccCCcCHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQE---DIGKKIGLFDDSWKNKSFEEKAVDILR 256 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~---~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (626)
.++.|+|..|.||||++..+.... .......++.--. .. +.... .+..+... ..+.......+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~e~-~~--E~~~~~~~~~i~q~~v------g~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIED-PI--EFVHESKRSLINQREV------GLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEEcC-Cc--cccccCccceeeeccc------CCCccCHHHHHHH
Confidence 478999999999999999888766 3333334433211 11 11100 01111000 1112234556777
Q ss_pred HhCCCcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHHh
Q 006902 257 RLGEKRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVCG 304 (626)
Q Consensus 257 ~l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va~ 304 (626)
.+....=.+++|++.+.+....+... ...|..++.|+...++..
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~----a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTA----AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHH----HHcCCEEEEEecCCcHHH
Confidence 77767778999999776554433221 223556888887766554
No 182
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.27 E-value=0.018 Score=65.88 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=39.1
Q ss_pred CCcccchHHHHHHHHHHHhc---------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAE---------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...++|.++.++.+.+.+.. ....++.++|+.|+|||.+|+.+....
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999988852 134578999999999999999998766
No 183
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.24 E-value=0.41 Score=55.17 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHHhcC---------CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|-++.++.+.+.+... ...++.++|+.|+|||+||+.+.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 66899999999998888631 23467789999999999999998866
No 184
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.24 E-value=0.025 Score=55.08 Aligned_cols=92 Identities=21% Similarity=0.289 Sum_probs=56.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccC----CCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc-------cCCcC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQN----NFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS-------WKNKS 246 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-------~~~~~ 246 (626)
.-.+.=|+|.+|+|||.|+.+++-.. .+.. .=..++|++-...|..+++. +|++..+...+. ....+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCC
Confidence 46788999999999999998887654 2221 22459999999999888876 466655432210 01122
Q ss_pred HHHH---HHHHHHHh-CCCcEEEEEeCCC
Q 006902 247 FEEK---AVDILRRL-GEKRFVLLLDDIW 271 (626)
Q Consensus 247 ~~~~---~~~l~~~l-~~k~~llvlDdv~ 271 (626)
.+++ ...+...+ .++--|||+|.+-
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHhhccccceEEEEecchH
Confidence 2333 23333333 2445588888884
No 185
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.036 Score=60.97 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=40.2
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.+..++.|..++..++. ..+-++|..|+||||+|+.+....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 4578999999999999988753 567899999999999999999887
No 186
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.23 E-value=0.026 Score=54.49 Aligned_cols=93 Identities=15% Similarity=0.249 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCC----CCeEEEEEecCccCHHHHHHHHHHHhCCCCCc----------cC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNN----FDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS----------WK 243 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~----------~~ 243 (626)
.-.++.|+|.+|+|||++|.++.-.. ..... ...++|++....++...+.. +++..+..... ++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 46789999999999999999997543 11221 36799999888777655443 33443321110 01
Q ss_pred CcCHHHHHHHHHHHhC-C-CcEEEEEeCCCC
Q 006902 244 NKSFEEKAVDILRRLG-E-KRFVLLLDDIWE 272 (626)
Q Consensus 244 ~~~~~~~~~~l~~~l~-~-k~~llvlDdv~~ 272 (626)
..+.......+...+. . +.-++|+|.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 1122233344444443 3 566889998843
No 187
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.21 E-value=0.024 Score=59.99 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=40.4
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+++..+.. ..+-++|..|+||||+|+.+.+..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5679999999999999987765 567899999999999999998876
No 188
>PRK09354 recA recombinase A; Provisional
Probab=96.21 E-value=0.018 Score=58.03 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=57.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc---cCCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS---WKNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (626)
.-+++-|+|.+|+||||||.++.... ...-..++||+.-..++.. .++.++.+.+. ......++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 46789999999999999999988766 3344678999988877753 45555543221 1223445555555
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 006902 255 LRRLG-EKRFVLLLDDIWE 272 (626)
Q Consensus 255 ~~~l~-~k~~llvlDdv~~ 272 (626)
...++ ++.-++|+|.+-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 54443 4566889998853
No 189
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.21 E-value=0.0092 Score=67.53 Aligned_cols=47 Identities=21% Similarity=0.399 Sum_probs=37.8
Q ss_pred CCcccchHHHHHHHHHHHhcC---------CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...++|.++.++.+.+.+... ...++.++|+.|+|||+||+.+....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 356788888888888887631 23468899999999999999998866
No 190
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.19 E-value=0.038 Score=53.13 Aligned_cols=89 Identities=20% Similarity=0.257 Sum_probs=51.7
Q ss_pred HHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccC
Q 006902 166 QLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWK 243 (626)
Q Consensus 166 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~ 243 (626)
.+..+.++..+ .....+.++|.+|+|||+||.++.+... ..-..+++++ ..++...+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 44455555543 2335788999999999999999999872 2223456663 34455544433321 1
Q ss_pred CcCHHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 006902 244 NKSFEEKAVDILRRLGEKRFVLLLDDIWER 273 (626)
Q Consensus 244 ~~~~~~~~~~l~~~l~~k~~llvlDdv~~~ 273 (626)
.... ..+.+.+. +.=+||+||+...
T Consensus 150 ~~~~----~~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 150 ETSE----EQLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred cccH----HHHHHHhc-cCCEEEEeCCCCC
Confidence 1122 22334454 3447888999543
No 191
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.15 E-value=0.015 Score=56.04 Aligned_cols=124 Identities=17% Similarity=0.206 Sum_probs=74.4
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCe-EEEEEecCccCHHHHHHHHHHHhC
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDC-VIWVVVSKELRLEKIQEDIGKKIG 236 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~~~~~~l~~~i~~~l~ 236 (626)
++++|-+..++.+.+.+..........+|++|.|||+-|+.+..... -.+-|.+ ++=.++|....+. +.++
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~-~~~~~~~rvl~lnaSderGis-vvr~------ 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN-CEQLFPCRVLELNASDERGIS-VVRE------ 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc-Cccccccchhhhccccccccc-chhh------
Confidence 56799999999999999987888999999999999999999888772 2345544 3333444443222 1100
Q ss_pred CCCCccCCcCHHHHHHHHHHHh--CCCc-EEEEEeCCCCc--cccccccCCCCCCCCCCcEEEEe
Q 006902 237 LFDDSWKNKSFEEKAVDILRRL--GEKR-FVLLLDDIWER--VDLTEVGVPLPSPQNTTSKVVFT 296 (626)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l--~~k~-~llvlDdv~~~--~~~~~l~~~~~~~~~~~s~iivT 296 (626)
...+...+........ ..++ -.+|||++... +.|..++.... .....++.+..
T Consensus 108 ------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE-~~s~~trFiLI 165 (346)
T KOG0989|consen 108 ------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME-DFSRTTRFILI 165 (346)
T ss_pred ------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh-ccccceEEEEE
Confidence 0011111111110000 1123 36789999764 66888766654 44455565533
No 192
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.15 E-value=0.056 Score=48.62 Aligned_cols=119 Identities=17% Similarity=0.179 Sum_probs=67.0
Q ss_pred chHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHHhhcc-----------------CCCCeEEEEEecCc--
Q 006902 162 GLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKFLENQ-----------------NNFDCVIWVVVSKE-- 221 (626)
Q Consensus 162 Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~~F~~~~wv~~s~~-- 221 (626)
|-++..+.+.+.+..++. ..+-++|..|+||+++|..+.....-.. .......|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 456677888888887764 4688999999999999999888763111 11222333332221
Q ss_pred -cCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cccccccCCCCCCCCCCcEEEEecC
Q 006902 222 -LRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWER--VDLTEVGVPLPSPQNTTSKVVFTTR 298 (626)
Q Consensus 222 -~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtr 298 (626)
...+++. ++...+.... ..++.=++|+||+... .....++..+- ....++++|++|.
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LE-epp~~~~fiL~t~ 140 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLE-EPPENTYFILITN 140 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHH-STTTTEEEEEEES
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhc-CCCCCEEEEEEEC
Confidence 2232222 3333332211 1234567899999764 34455544443 3445788887776
Q ss_pred Ch
Q 006902 299 FI 300 (626)
Q Consensus 299 ~~ 300 (626)
+.
T Consensus 141 ~~ 142 (162)
T PF13177_consen 141 NP 142 (162)
T ss_dssp -G
T ss_pred Ch
Confidence 53
No 193
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.13 E-value=0.04 Score=55.24 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=57.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhcc----CCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc-------CCcC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQ----NNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW-------KNKS 246 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~-------~~~~ 246 (626)
.-.++-|+|.+|+|||+|+.+++-.. ... ..=..++||+....|+.+++.+ +++.++...+.. ...+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCC
Confidence 45788899999999999998876543 211 1124689999999898888764 566665532210 1112
Q ss_pred HHHHH---HHHHHHhC-CCcEEEEEeCCC
Q 006902 247 FEEKA---VDILRRLG-EKRFVLLLDDIW 271 (626)
Q Consensus 247 ~~~~~---~~l~~~l~-~k~~llvlDdv~ 271 (626)
.++.. ..+...+. .+--++|+|.+.
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 33222 33333343 344578888874
No 194
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.12 E-value=0.021 Score=56.95 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc---cCCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS---WKNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (626)
.-+++-|+|.+|+||||||.++.... ...-..++|++..+.++.. .+++++...+. ......++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 56799999999999999999987766 2334568899877766553 35555543221 1223445555555
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 006902 255 LRRLG-EKRFVLLLDDIWE 272 (626)
Q Consensus 255 ~~~l~-~k~~llvlDdv~~ 272 (626)
...++ +..-++|+|.+-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 44443 4566889998843
No 195
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.12 E-value=0.039 Score=54.68 Aligned_cols=87 Identities=24% Similarity=0.325 Sum_probs=47.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-LRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILR 256 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (626)
...++.|+|.+|+||||++..+.... ..+..-..+..++.... .....-+......++.+.. ...+...+...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 45799999999999999999998877 32211124556654431 1223333444444554432 2233344433333
Q ss_pred HhCCCcEEEEEeC
Q 006902 257 RLGEKRFVLLLDD 269 (626)
Q Consensus 257 ~l~~k~~llvlDd 269 (626)
.+.+. =++++|.
T Consensus 269 ~~~~~-d~vliDt 280 (282)
T TIGR03499 269 RLRDK-DLILIDT 280 (282)
T ss_pred HccCC-CEEEEeC
Confidence 33433 3566664
No 196
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.032 Score=57.74 Aligned_cols=108 Identities=21% Similarity=0.198 Sum_probs=63.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRR 257 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (626)
....+.+.|++|+|||+||..+.. ...|..+--++.... ++.. +..............
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~-----~S~FPFvKiiSpe~m-------------iG~s----EsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL-----SSDFPFVKIISPEDM-------------IGLS----ESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh-----hcCCCeEEEeChHHc-------------cCcc----HHHHHHHHHHHHHHh
Confidence 345566789999999999999876 457876554432221 1110 001111222334445
Q ss_pred hCCCcEEEEEeCCCCccccccccCCCCC------------CCCCCcE--EEEecCChHHHhhhc
Q 006902 258 LGEKRFVLLLDDIWERVDLTEVGVPLPS------------PQNTTSK--VVFTTRFIDVCGSME 307 (626)
Q Consensus 258 l~~k~~llvlDdv~~~~~~~~l~~~~~~------------~~~~~s~--iivTtr~~~va~~~~ 307 (626)
.++.--.||+||+...-+|-.++..|.. ....|-| |+-||-...|...|+
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~ 658 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMG 658 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcC
Confidence 5667778999999888888777655420 1123444 445666667777654
No 197
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.019 Score=53.33 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=44.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRR 257 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (626)
...+|+|.|.+|.||||+|+.++..+ ...+- .-++...-+. ..-.....+.....-+.....+.+-....|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~--~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKV--VVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcc--eEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45789999999999999999999988 33321 1111111110 111111111222222223455666677777777
Q ss_pred hCCCc
Q 006902 258 LGEKR 262 (626)
Q Consensus 258 l~~k~ 262 (626)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 77776
No 198
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.11 E-value=0.011 Score=61.87 Aligned_cols=46 Identities=28% Similarity=0.412 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.+..++++.+.+.- ....-+.++|++|+|||++|+.+.+..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999998887741 134568899999999999999999976
No 199
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.10 E-value=0.018 Score=60.90 Aligned_cols=97 Identities=26% Similarity=0.307 Sum_probs=56.4
Q ss_pred CcccchHHH--HHHHHHHHhcC-CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCC-eEEEEEecCccCHHHHHHHHHH
Q 006902 158 PTIVGLQSQ--LEQVWRCLAEE-SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFD-CVIWVVVSKELRLEKIQEDIGK 233 (626)
Q Consensus 158 ~~~vGr~~~--~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~l~~~i~~ 233 (626)
..++|-... .....++..+. ...-+-|+|..|+|||+||+.+.+... +.+.+ .++|++. .++..++..
T Consensus 106 nFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~ 177 (440)
T PRK14088 106 NFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVD 177 (440)
T ss_pred ccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHH
Confidence 344575433 22333443322 234589999999999999999999872 22333 4666643 445566655
Q ss_pred HhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 006902 234 KIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWER 273 (626)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~ 273 (626)
.+... .. ..+.+.+..+.-+|++||+...
T Consensus 178 ~~~~~-------~~----~~f~~~~~~~~dvLlIDDi~~l 206 (440)
T PRK14088 178 SMKEG-------KL----NEFREKYRKKVDVLLIDDVQFL 206 (440)
T ss_pred HHhcc-------cH----HHHHHHHHhcCCEEEEechhhh
Confidence 55321 11 1233333334558999999743
No 200
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.10 E-value=0.047 Score=58.51 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=39.7
Q ss_pred CcccchHHHHHHHHHHHhcCCCe-EEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAG-IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+...+..++.. ++-++|..|+||||+|+.+.+..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 46799999999999999887654 66899999999999999988765
No 201
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.09 E-value=0.054 Score=57.84 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+.+++..+.. ..+-++|+.|+||||+|+.+....
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988654 456789999999999999988865
No 202
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.034 Score=60.87 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=40.2
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+.+++..++. ..+-++|..|+||||+|+.+.+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999988765 467899999999999999998876
No 203
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.054 Score=55.57 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=40.7
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+.+.+..++. ..+-++|+.|+||+|+|..+....
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999988764 468899999999999999988877
No 204
>PRK06547 hypothetical protein; Provisional
Probab=96.07 E-value=0.0097 Score=54.02 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 168 EQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 168 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.+...+......+|+|.|.+|+||||+|+.+....
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344555666788999999999999999999998865
No 205
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.06 E-value=0.049 Score=48.85 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=30.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL 222 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~ 222 (626)
++.|+|.+|.||||++..+.... ...-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 36799999999999999999877 3344567888776554
No 206
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.06 E-value=0.021 Score=53.13 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=50.7
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCcc-CCcCHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK-ELRLEKIQEDIGKKIGLFDDSW-KNKSFEEKAVDILR 256 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 256 (626)
.+|+.+||+.|+||||.+..+.... ..+ -..+..++... .....+-++..++.++.+.... ...+.........+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999998888877777 333 33466666543 2345556777788887653211 12234444433333
Q ss_pred HhCCCc-EEEEEeCC
Q 006902 257 RLGEKR-FVLLLDDI 270 (626)
Q Consensus 257 ~l~~k~-~llvlDdv 270 (626)
....++ =++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 333333 34555544
No 207
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.045 Score=54.08 Aligned_cols=46 Identities=28% Similarity=0.424 Sum_probs=39.0
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++-|-++.+++|.+...- +..+-|-++|++|.|||-||++|.|+.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3466889999999888752 357778999999999999999999977
No 208
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.03 E-value=0.041 Score=49.45 Aligned_cols=125 Identities=21% Similarity=0.201 Sum_probs=72.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEE---------------------ecCcc--------------
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVV---------------------VSKEL-------------- 222 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---------------------~s~~~-------------- 222 (626)
.-..+-++|++|.||||+.+.+|... +. -...+|+. |-|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e-~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE-RP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh-cC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 45678999999999999999999987 22 22344442 11211
Q ss_pred -------CHHHHHHH---HHHHhCCCCCc----cCCcCHHHHHHHHHHHhCCCcEEEEEeCC----CCccccccccCCCC
Q 006902 223 -------RLEKIQED---IGKKIGLFDDS----WKNKSFEEKAVDILRRLGEKRFVLLLDDI----WERVDLTEVGVPLP 284 (626)
Q Consensus 223 -------~~~~l~~~---i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~llvlDdv----~~~~~~~~l~~~~~ 284 (626)
...++.+. .+...++.... .+-..-++....|.+.+-+++-+++-|.= .....|+-+...-.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 11222222 22333332110 01122234445577777888888888864 33344554422211
Q ss_pred CCCCCCcEEEEecCChHHHhhhc
Q 006902 285 SPQNTTSKVVFTTRFIDVCGSME 307 (626)
Q Consensus 285 ~~~~~~s~iivTtr~~~va~~~~ 307 (626)
-+..|..|+++|.+.++...+.
T Consensus 183 -inr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 183 -INRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred -HhhcCcEEEEEeccHHHHHhcc
Confidence 2456899999999999887663
No 209
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.01 Score=51.63 Aligned_cols=25 Identities=48% Similarity=0.555 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..-|.|.||+|+||||+++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3468999999999999999999988
No 210
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.98 E-value=0.047 Score=52.39 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+...+++|.|..|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999887
No 211
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.98 E-value=0.0085 Score=65.42 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=39.5
Q ss_pred CcccchHHHHHHHHHHHhcC-----CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEE-----SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-++.++++..|+... ...++.|+|+.|+||||+++.+....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999998763 34679999999999999999999866
No 212
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.96 E-value=0.046 Score=55.28 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=57.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhcc----CCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc-------CCcC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQ----NNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW-------KNKS 246 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~-------~~~~ 246 (626)
.-.++-|+|.+|+|||+|+.+++-.. ... ..-..++||+....|..+++.+ +++.++...... ...+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~-qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTT-QLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHH-hcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence 45788899999999999999886443 211 1224789999999999888765 566666543210 1223
Q ss_pred HHHHH---HHHHHHhC-CCcEEEEEeCCC
Q 006902 247 FEEKA---VDILRRLG-EKRFVLLLDDIW 271 (626)
Q Consensus 247 ~~~~~---~~l~~~l~-~k~~llvlDdv~ 271 (626)
.++.. ..+...+. .+--|+|+|.+-
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 33322 22322332 334578888874
No 213
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.95 E-value=0.053 Score=54.54 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=41.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccC----CCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQN----NFDCVIWVVVSKELRLEKIQEDIGKKIGL 237 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~l~~~i~~~l~~ 237 (626)
...++.|+|.+|+|||+|+.+++... .... .-..++|++....+..+++ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 57889999999999999999987643 1111 1236799998888787764 445565554
No 214
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.93 E-value=0.037 Score=53.75 Aligned_cols=92 Identities=20% Similarity=0.335 Sum_probs=55.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCC-CeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----ccCCcCH-H--
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNF-DCVIWVVVSKEL-RLEKIQEDIGKKIGLFDD----SWKNKSF-E-- 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~-~-- 248 (626)
.-.-++|+|..|+||||||+++++.. +.+| +.++++-+.+.. ...++.+++...-..... ....+.. .
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 45678999999999999999999987 3344 446666666553 445555555442111100 0011111 1
Q ss_pred ---HHHHHHHHHh---CCCcEEEEEeCCCC
Q 006902 249 ---EKAVDILRRL---GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 ---~~~~~l~~~l---~~k~~llvlDdv~~ 272 (626)
..+..+.+++ +++..|+++||+..
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1223344555 38999999999854
No 215
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.93 E-value=0.024 Score=61.24 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=34.9
Q ss_pred CcccchHHHHHHHHHHHh---c---------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLA---E---------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++.++++.+++. . ...+-+-++|++|+|||++|+.+.+..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 467898887776665543 1 123458899999999999999998866
No 216
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.93 E-value=0.058 Score=50.27 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=46.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCC---eEEEEEecCccCHHHHHHHHHHHh--CCCCCccCCcCHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKFLENQNNFD---CVIWVVVSKELRLEKIQEDIGKKI--GLFDDSWKNKSFEEKAVDIL 255 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~---~~~wv~~s~~~~~~~l~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 255 (626)
||+|.|.+|+||||+|+.+..... +.... ....+.............. -... ...-......+.+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999999883 12222 2344433333322222222 1111 11111124556677777777
Q ss_pred HHhCCCcEEE
Q 006902 256 RRLGEKRFVL 265 (626)
Q Consensus 256 ~~l~~k~~ll 265 (626)
....++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666666443
No 217
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.011 Score=56.32 Aligned_cols=46 Identities=30% Similarity=0.413 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHHHHhc-----CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++.++++.=++.. +...=+-++|++|.||||||..+.+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 4679999888887666653 456778999999999999999999987
No 218
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.89 E-value=0.021 Score=56.49 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHH
Q 006902 162 GLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINN 201 (626)
Q Consensus 162 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~ 201 (626)
+|..+..--+++|.++.+..|++.|.+|.|||.||.+..-
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHH
Confidence 4666777778999999999999999999999988766443
No 219
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.88 E-value=0.036 Score=53.04 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC-----ccCHHHHHHHHHHHhCCCCCcc----CCcCHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK-----ELRLEKIQEDIGKKIGLFDDSW----KNKSFE 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-----~~~~~~l~~~i~~~l~~~~~~~----~~~~~~ 248 (626)
+-.++++||.+|.||||+++.+..-. .--...+++.-.+ .....+-..++++.++.+.... ..-+-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 56789999999999999999998766 3333445444222 2223344566666666543211 111222
Q ss_pred HHH-HHHHHHhCCCcEEEEEeCCCCcccc------ccccCCCCCCCCCCcEEEEecCChHHHhhhcc
Q 006902 249 EKA-VDILRRLGEKRFVLLLDDIWERVDL------TEVGVPLPSPQNTTSKVVFTTRFIDVCGSMEK 308 (626)
Q Consensus 249 ~~~-~~l~~~l~~k~~llvlDdv~~~~~~------~~l~~~~~~~~~~~s~iivTtr~~~va~~~~~ 308 (626)
+++ -.+.+.|.-++-++|.|+--+..+- -.+...+ ....|-..+..|.+-.|+..+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl--q~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL--QEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH--HHHhCCeEEEEEEEHHhhhhhcc
Confidence 332 3466778888999999986543221 1111111 12335567777777777776654
No 220
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.88 E-value=0.035 Score=52.17 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=71.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEE----------------------ecCcc-------------
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVV----------------------VSKEL------------- 222 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~----------------------~s~~~------------- 222 (626)
.-.+++|+|++|+|||||...+..-. + .-...+++. +.|.|
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld-~---pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD-K---PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc-C---CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 45689999999999999999887544 1 122232322 11211
Q ss_pred -----------CHHHHHHHHHHHhCCCCCc-----cCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc------ccccccc
Q 006902 223 -----------RLEKIQEDIGKKIGLFDDS-----WKNKSFEEKAVDILRRLGEKRFVLLLDDIWER------VDLTEVG 280 (626)
Q Consensus 223 -----------~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~------~~~~~l~ 280 (626)
...+....+++.+++.... .+-..-++..-.+.+.+...+-+|+.|+=-.. ...-++.
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 1123344455555554211 11122233445577778888888888864322 1111222
Q ss_pred CCCCCCCCCCcEEEEecCChHHHhhhcc
Q 006902 281 VPLPSPQNTTSKVVFTTRFIDVCGSMEK 308 (626)
Q Consensus 281 ~~~~~~~~~~s~iivTtr~~~va~~~~~ 308 (626)
..+ ....|..||+.|.+..+|..++.
T Consensus 186 ~~~--~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 186 REL--NKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HHH--HHhcCCEEEEEcCCHHHHHhCCE
Confidence 112 23457789999999999987654
No 221
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.86 E-value=0.062 Score=59.36 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=39.7
Q ss_pred CcccchHHHHHHHHHHHhcCC-CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+..++..++ ...+-++|+.|+||||+|+.+....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 457999999999999998865 4567889999999999999998766
No 222
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.86 E-value=0.04 Score=50.28 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++.++|++|+||||+++.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999877
No 223
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.065 Score=54.48 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=70.9
Q ss_pred cccchHHHHHHHHHHHhc-CCCe-EEEEEcCCCchHHHHHHHHHHHHhhccC-------------------CCCeEEEEE
Q 006902 159 TIVGLQSQLEQVWRCLAE-ESAG-IIGLYGMGGVGKTTLLTRINNKFLENQN-------------------NFDCVIWVV 217 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~F~~~~wv~ 217 (626)
.++|-+.....+..+... ++.. .+-++|+.|+||||+|..+.+... -.. .++.+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL-CENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh-CCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 357778888888888874 3344 489999999999999999998772 111 122344444
Q ss_pred ecCccC---HHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cccccccCCCCCCCCCCcE
Q 006902 218 VSKELR---LEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWER--VDLTEVGVPLPSPQNTTSK 292 (626)
Q Consensus 218 ~s~~~~---~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~--~~~~~l~~~~~~~~~~~s~ 292 (626)
.+.... ..+..+++.+....... .++.-++++|++... +.-..+...+. .....++
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~------------------~~~~kviiidead~mt~~A~nallk~lE-ep~~~~~ 141 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPL------------------EGGYKVVIIDEADKLTEDAANALLKTLE-EPPKNTR 141 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCC------------------CCCceEEEeCcHHHHhHHHHHHHHHHhc-cCCCCeE
Confidence 444433 23334444443332210 345678888988654 22333333333 3345677
Q ss_pred EEEecC
Q 006902 293 VVFTTR 298 (626)
Q Consensus 293 iivTtr 298 (626)
+|++|.
T Consensus 142 ~il~~n 147 (325)
T COG0470 142 FILITN 147 (325)
T ss_pred EEEEcC
Confidence 777765
No 224
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.81 E-value=0.0026 Score=35.67 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=9.5
Q ss_pred ccccccccccccccchHHh
Q 006902 313 LELLDISHTYIQELPEELK 331 (626)
Q Consensus 313 Lr~L~L~~~~i~~LP~~i~ 331 (626)
|++|||++|+++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 225
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.75 E-value=0.022 Score=52.09 Aligned_cols=75 Identities=28% Similarity=0.515 Sum_probs=43.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRR 257 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (626)
...-+.++|..|+|||.||..+.+... ...+ .+.|+. ..+++..+-.. . ....... +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~-~v~f~~------~~~L~~~l~~~----~---~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGY-SVLFIT------ASDLLDELKQS----R---SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCC----H---CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCc-ceeEee------cCceecccccc----c---cccchhh----hcCc
Confidence 456799999999999999999998773 2333 356664 44555554321 1 1112212 2233
Q ss_pred hCCCcEEEEEeCCCCc
Q 006902 258 LGEKRFVLLLDDIWER 273 (626)
Q Consensus 258 l~~k~~llvlDdv~~~ 273 (626)
+.+ -=|||+||+-..
T Consensus 106 l~~-~dlLilDDlG~~ 120 (178)
T PF01695_consen 106 LKR-VDLLILDDLGYE 120 (178)
T ss_dssp HHT-SSCEEEETCTSS
T ss_pred ccc-ccEeccccccee
Confidence 332 347789998643
No 226
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.75 E-value=0.05 Score=53.24 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=28.9
Q ss_pred HHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 170 VWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 170 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+++...+..++.|+|..|.|||||+..+.+..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445555689999999999999999999999876
No 227
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.75 E-value=0.057 Score=56.78 Aligned_cols=76 Identities=29% Similarity=0.341 Sum_probs=45.1
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHh
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRL 258 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 258 (626)
...+.|+|..|+|||+|++++++... ....=..+++++. .++...+...+... .. ..+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRNN-------KM----EEFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CH----HHHHHHH
Confidence 35688999999999999999999872 2111123566643 34444555444311 11 2233333
Q ss_pred CCCcEEEEEeCCCCc
Q 006902 259 GEKRFVLLLDDIWER 273 (626)
Q Consensus 259 ~~k~~llvlDdv~~~ 273 (626)
.+ .-+|++||+...
T Consensus 198 ~~-~dlLiiDDi~~l 211 (405)
T TIGR00362 198 RS-VDLLLIDDIQFL 211 (405)
T ss_pred Hh-CCEEEEehhhhh
Confidence 32 237889999753
No 228
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.023 Score=60.83 Aligned_cols=74 Identities=28% Similarity=0.232 Sum_probs=49.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc--CHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL--RLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDIL 255 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (626)
...-|-|.|..|+|||+||+++++... +.+.-.+.+++++.-. ..+.+++.+. ..+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH-------------------HHHH
Confidence 345678999999999999999999983 5666567777766531 2233332222 2233
Q ss_pred HHhCCCcEEEEEeCCCC
Q 006902 256 RRLGEKRFVLLLDDIWE 272 (626)
Q Consensus 256 ~~l~~k~~llvlDdv~~ 272 (626)
+.+...+-++||||+.-
T Consensus 489 e~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHhhCCcEEEEcchhh
Confidence 34456788999999853
No 229
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.72 E-value=0.081 Score=52.91 Aligned_cols=117 Identities=22% Similarity=0.247 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHhc----CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 006902 162 GLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGL 237 (626)
Q Consensus 162 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~ 237 (626)
++....+...+++.. ...+-+-++|..|+|||.||.++.+... ...+ .+.++++ ..++.++.....-
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEH------HHHHHHHHHHHhc
Confidence 455555555666653 1346788999999999999999999882 3333 3556644 3555555554421
Q ss_pred CCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--ccccc--ccCCCCCCC-CCCcEEEEecCC
Q 006902 238 FDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWER--VDLTE--VGVPLPSPQ-NTTSKVVFTTRF 299 (626)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~--~~~~~--l~~~~~~~~-~~~s~iivTtr~ 299 (626)
.+.. ...+.+. +-=+|||||+-.. .+|.. +........ ..+-..|+||..
T Consensus 206 -------~~~~----~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVK----EKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -------CcHH----HHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1111 2222333 4557899999543 45643 322221011 234567888863
No 230
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.71 E-value=0.018 Score=57.66 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....++|+|++|.|||.+|+++++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999987
No 231
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.0011 Score=59.68 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=45.7
Q ss_pred cccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCcc--ccccccCCCccEEEEeccCcccc
Q 006902 445 AFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKD--STFLVFAPNLKSLTLFDCGAMEE 522 (626)
Q Consensus 445 ~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~L~~L~~L~L~~~~~l~~ 522 (626)
.+..++.++.|.+..|..+.+.....+. +..++|+.|+|++|..+++ +.+|..+++|+.|.|.+.+.+..
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~--------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG--------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc--------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 4455566666666666666544444443 2457888888888877776 44677888888888776655443
Q ss_pred c
Q 006902 523 I 523 (626)
Q Consensus 523 i 523 (626)
.
T Consensus 192 ~ 192 (221)
T KOG3864|consen 192 L 192 (221)
T ss_pred h
Confidence 3
No 232
>PRK04296 thymidine kinase; Provisional
Probab=95.68 E-value=0.021 Score=52.93 Aligned_cols=113 Identities=18% Similarity=0.087 Sum_probs=61.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhC
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLG 259 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (626)
.++-|+|..|.||||+|..+.... ..+-..++.+. ..++.......++.+++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 467889999999999999988877 23333344341 1112222234455666543321112233444444444 23
Q ss_pred CCcEEEEEeCCCCc--cccccccCCCCCCCCCCcEEEEecCChH
Q 006902 260 EKRFVLLLDDIWER--VDLTEVGVPLPSPQNTTSKVVFTTRFID 301 (626)
Q Consensus 260 ~k~~llvlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtr~~~ 301 (626)
++.-++|+|.+... ++..++...+ ...|..|++|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---HHcCCeEEEEecCcc
Confidence 34458999999542 1122222111 235678899888633
No 233
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.66 E-value=0.011 Score=55.80 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999866
No 234
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.65 E-value=0.093 Score=57.09 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=40.3
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+..++..++. ..+-++|..|+||||+|+.+.+..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4679999999999999988754 467899999999999999998876
No 235
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.65 E-value=0.01 Score=50.96 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|.|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998873
No 236
>PHA00729 NTP-binding motif containing protein
Probab=95.63 E-value=0.018 Score=54.10 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 169 QVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++++.+.......|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566666666778999999999999999999875
No 237
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.62 E-value=0.02 Score=52.92 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=41.0
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++||-++.++.+.-.-.+++..-+.|.||+|+||||-+..+.+..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 4689999999998888888888899999999999999888888776
No 238
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.00054 Score=64.61 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=17.5
Q ss_pred ccCccCEEEEeCCCCCccccccccCCCccEEEEec
Q 006902 482 VFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFD 516 (626)
Q Consensus 482 ~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~ 516 (626)
.++.|+.|.|+- ++++.+.++..+.+|+.|.|..
T Consensus 39 kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 39 KMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRK 72 (388)
T ss_pred hcccceeEEeec-cccccchhHHHHHHHHHHHHHh
Confidence 345555555554 2444555555555555555543
No 239
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.60 E-value=0.017 Score=52.26 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=69.2
Q ss_pred cceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCC--CCcccc
Q 006902 424 SCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCT--KLKDST 501 (626)
Q Consensus 424 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~--~l~~l~ 501 (626)
.....+++.++.-. ....|..++.|+.|.+..+ .+..+.+.... .+++|..|.|.+++ .+.++.
T Consensus 42 d~~d~iDLtdNdl~----~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~---------~~p~l~~L~LtnNsi~~l~dl~ 107 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR----KLDNLPHLPRLHTLLLNNN-RITRIDPDLDT---------FLPNLKTLILTNNSIQELGDLD 107 (233)
T ss_pred cccceecccccchh----hcccCCCccccceEEecCC-cceeeccchhh---------hccccceEEecCcchhhhhhcc
Confidence 34555566655322 3346777788888888864 44445555544 67899999999863 345667
Q ss_pred ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCc
Q 006902 502 FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYL 553 (626)
Q Consensus 502 ~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 553 (626)
++..+|.|++|.+-+++.-..- . +. ...+-.+|+|+.|++.+-
T Consensus 108 pLa~~p~L~~Ltll~Npv~~k~-~---YR-----~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNPVEHKK-N---YR-----LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhccCCccceeeecCCchhccc-C---ce-----eEEEEecCcceEeehhhh
Confidence 7889999999998876432211 1 11 114566899999988764
No 240
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.58 E-value=0.12 Score=52.37 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=43.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccC----CCCeEEEEEecCccCHHHHHHHHHHHhCCC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQN----NFDCVIWVVVSKELRLEKIQEDIGKKIGLF 238 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 238 (626)
...++-|+|.+|+|||+++..++-.. .... .-..++|++....|..+++. +|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 46788899999999999999887554 2111 12369999999999888764 556666543
No 241
>PRK08233 hypothetical protein; Provisional
Probab=95.57 E-value=0.011 Score=54.52 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998866
No 242
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.56 E-value=0.095 Score=50.48 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=55.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc----------------
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS---------------- 241 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---------------- 241 (626)
.-.++.|+|.+|+|||++|.++.... ...=..++|++..+. ..++.+.+ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 56789999999999999999985543 123357889988754 45555554 333322110
Q ss_pred --cCCcCHHHHHHHHHHHhCC-CcEEEEEeCCC
Q 006902 242 --WKNKSFEEKAVDILRRLGE-KRFVLLLDDIW 271 (626)
Q Consensus 242 --~~~~~~~~~~~~l~~~l~~-k~~llvlDdv~ 271 (626)
+.....+.....+.+.+.. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55578999875
No 243
>CHL00176 ftsH cell division protein; Validated
Probab=95.54 E-value=0.041 Score=60.62 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=34.7
Q ss_pred CcccchHHHHHHHHHHH---hcC---------CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCL---AEE---------SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.++.++++.+.+ ... ..+-+.++|++|+|||++|+.+.+..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45788887777665554 221 24468899999999999999998866
No 244
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.53 E-value=0.06 Score=55.33 Aligned_cols=86 Identities=21% Similarity=0.326 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc---CCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW---KNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (626)
.-.++.|.|.+|+|||||+.++.... ...-..++|++.... ..++. .-+..++...+.. ...+.+.+...+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~---a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL---AKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 45789999999999999999998876 233346788876543 33332 2244555433221 122333333333
Q ss_pred HHHhCCCcEEEEEeCCCC
Q 006902 255 LRRLGEKRFVLLLDDIWE 272 (626)
Q Consensus 255 ~~~l~~k~~llvlDdv~~ 272 (626)
. ..+.-++|+|.+..
T Consensus 155 ~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 E---ELKPDLVIIDSIQT 169 (372)
T ss_pred H---hcCCcEEEEcchHH
Confidence 2 23566899999843
No 245
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.53 E-value=0.069 Score=52.10 Aligned_cols=91 Identities=20% Similarity=0.130 Sum_probs=60.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHh---CCCCCccCCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKI---GLFDDSWKNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l---~~~~~~~~~~~~~~~~~~l 254 (626)
.-+++=|+|+.|.||||+|.+++-.. +..-..++|++.-+.++++.+..--...+ ..... .........++.+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~-~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQP-DTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecC-CCHHHHHHHHHHH
Confidence 56788999999999999999988876 44555899999999998877654433312 11111 1222333444445
Q ss_pred HHHhCCCcEEEEEeCCCC
Q 006902 255 LRRLGEKRFVLLLDDIWE 272 (626)
Q Consensus 255 ~~~l~~k~~llvlDdv~~ 272 (626)
......+--|+|+|.+-.
T Consensus 135 ~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 135 ARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHhccCCCCEEEEecCcc
Confidence 555444566888898843
No 246
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.52 E-value=0.099 Score=50.44 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=36.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDI 231 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i 231 (626)
.-.++.|.|.+|.|||++|.++.... -..-+.++|++... +.+++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 56889999999999999999876543 13345688888765 555666654
No 247
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.50 E-value=0.081 Score=55.27 Aligned_cols=92 Identities=22% Similarity=0.222 Sum_probs=50.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCcc-CCcCHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-LRLEKIQEDIGKKIGLFDDSW-KNKSFEEKAVDIL 255 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 255 (626)
...++.++|.+|+||||.|..+.... ..+..+ .+.-+++... +...+-+.......+.+.... ...+.........
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 46799999999999999998888765 211222 3444444321 122333444556565543211 1233444444444
Q ss_pred HHhCCCcE-EEEEeCCC
Q 006902 256 RRLGEKRF-VLLLDDIW 271 (626)
Q Consensus 256 ~~l~~k~~-llvlDdv~ 271 (626)
+....+.| ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 44434445 67777654
No 248
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.49 E-value=0.11 Score=52.48 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=42.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccC----CCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQN----NFDCVIWVVVSKELRLEKIQEDIGKKIGL 237 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~l~~~i~~~l~~ 237 (626)
.-.++-|+|.+|+|||+++.+++-.. .... .=..++||+....|+.+.+.+ +++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 46788999999999999999997765 2211 113799999998888877654 4455443
No 249
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.48 E-value=0.053 Score=57.42 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=65.2
Q ss_pred cccchHHH--HHHHHHHHhcC--CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHH
Q 006902 159 TIVGLQSQ--LEQVWRCLAEE--SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKK 234 (626)
Q Consensus 159 ~~vGr~~~--~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~ 234 (626)
.++|.... ......+.... ...-+-|+|..|+|||+|++++.+... ....--.++++ +.+++...+...
T Consensus 117 Fv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~-~~~~~~~v~yv------~~~~f~~~~~~~ 189 (450)
T PRK14087 117 FVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIE-SNFSDLKVSYM------SGDEFARKAVDI 189 (450)
T ss_pred ccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHH-HhCCCCeEEEE------EHHHHHHHHHHH
Confidence 45675433 33333333322 234588999999999999999999762 11111234555 345566666665
Q ss_pred hCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc---cc-ccccCCCCCCCCCCcEEEEecCC
Q 006902 235 IGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWERV---DL-TEVGVPLPSPQNTTSKVVFTTRF 299 (626)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~---~~-~~l~~~~~~~~~~~s~iivTtr~ 299 (626)
++... .....+.+.+.. .-+||+||+.... .+ +.+..-+-.....|..||+|+..
T Consensus 190 l~~~~---------~~~~~~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 190 LQKTH---------KEIEQFKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHHhh---------hHHHHHHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 54210 112334444443 3478889996532 22 22222111011234468888763
No 250
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.46 E-value=0.028 Score=60.72 Aligned_cols=101 Identities=24% Similarity=0.203 Sum_probs=54.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhC
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLG 259 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (626)
..+.|+|..|+|||.|++.+.+... ....--.+++++ ..++..++...+.. ... ..+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yit------aeef~~el~~al~~-------~~~----~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVS------SEEFTNEFINSIRD-------GKG----DSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEee------HHHHHHHHHHHHHh-------ccH----HHHHHHhh
Confidence 4589999999999999999999872 111112355663 34444454444321 111 22333333
Q ss_pred CCcEEEEEeCCCCc---cccc-cccCCCCCCCCCCcEEEEecCC
Q 006902 260 EKRFVLLLDDIWER---VDLT-EVGVPLPSPQNTTSKVVFTTRF 299 (626)
Q Consensus 260 ~k~~llvlDdv~~~---~~~~-~l~~~~~~~~~~~s~iivTtr~ 299 (626)
+ -=+|++||+... ..|. .+...+......+..|||||+.
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 3 247888999654 2222 1221111011234568888874
No 251
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.46 E-value=0.026 Score=51.17 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=23.4
Q ss_pred ccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCc
Q 006902 335 NLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFS 373 (626)
Q Consensus 335 ~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 373 (626)
+...+||+.| .+..++. +..+++|.+|.+.+|.+..
T Consensus 43 ~~d~iDLtdN-dl~~l~~--lp~l~rL~tLll~nNrIt~ 78 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDN--LPHLPRLHTLLLNNNRITR 78 (233)
T ss_pred ccceeccccc-chhhccc--CCCccccceEEecCCccee
Confidence 4556677777 4666665 6677777777777776553
No 252
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.46 E-value=0.11 Score=51.19 Aligned_cols=56 Identities=27% Similarity=0.464 Sum_probs=36.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCH--HHHHHHHHHHhCC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRL--EKIQEDIGKKIGL 237 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~--~~l~~~i~~~l~~ 237 (626)
..+++.++|.+|+||||++..+.... . ..-..+.+++... +.. .+-+...++..+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i 128 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGV 128 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCe
Confidence 46899999999999999999988777 2 2223566665543 222 2333444555553
No 253
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.45 E-value=0.16 Score=55.46 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=39.8
Q ss_pred CcccchHHHHHHHHHHHhcCC-CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+++..++ ...+-++|..|+||||+|+.+....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999998764 4567789999999999999998765
No 254
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.45 E-value=0.095 Score=51.70 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=43.9
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCC--CeEEEEEecCccCHHHHHHHHHHHhCCC--CCccCCcCHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNF--DCVIWVVVSKELRLEKIQEDIGKKIGLF--DDSWKNKSFEEKAV 252 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--~~~~wv~~s~~~~~~~l~~~i~~~l~~~--~~~~~~~~~~~~~~ 252 (626)
....+|+|.|..|+||||+|+.+.... .... ..+..++............. .+.. .......+......
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll---~~~~~~g~V~vi~~D~f~~~~~~l~~----~g~~~~~g~P~s~D~~~l~~ 132 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL---SRWPEHRKVELITTDGFLHPNQVLKE----RNLMKKKGFPESYDMHRLVK 132 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH---hhcCCCCceEEEecccccccHHHHHH----cCCccccCCChhccHHHHHH
Confidence 356899999999999999999887665 2111 13445554443332222222 2211 11124456666666
Q ss_pred HHHHHhCCC
Q 006902 253 DILRRLGEK 261 (626)
Q Consensus 253 ~l~~~l~~k 261 (626)
.+.....++
T Consensus 133 ~L~~Lk~g~ 141 (290)
T TIGR00554 133 FLSDLKSGK 141 (290)
T ss_pred HHHHHHCCC
Confidence 666655554
No 255
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.43 E-value=0.13 Score=52.01 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=42.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCC----CCeEEEEEecCccCHHHHHHHHHHHhCC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNN----FDCVIWVVVSKELRLEKIQEDIGKKIGL 237 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~s~~~~~~~l~~~i~~~l~~ 237 (626)
.-.++-|+|.+|+|||+++.++.-.. ..... =..++||+....|+.+.+.+. ++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcCC
Confidence 46788999999999999999998664 22111 147999999998888776644 444443
No 256
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.41 E-value=0.08 Score=48.75 Aligned_cols=127 Identities=19% Similarity=0.199 Sum_probs=72.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEe-------------------cCcc----------------
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVV-------------------SKEL---------------- 222 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~-------------------s~~~---------------- 222 (626)
.-.|+.|+|++|.|||||.+.+..-. ..-...+|+.- -|.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 45799999999999999999886544 22233555542 1122
Q ss_pred ---------CHHHHHHHHHHHhCCCCCc--c--CCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccccccc---cCCCCCC
Q 006902 223 ---------RLEKIQEDIGKKIGLFDDS--W--KNKSFEEKAVDILRRLGEKRFVLLLDDIWERVDLTEV---GVPLPSP 286 (626)
Q Consensus 223 ---------~~~~l~~~i~~~l~~~~~~--~--~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~~~~~l---~~~~~~~ 286 (626)
..++...++++.+++.... + .-..-++..-.|.+.|.-++-++.+|..-+.-|-+-+ ......-
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 1234444455555543321 0 1112233345577788888889999998765332211 1111101
Q ss_pred CCCCcEEEEecCChHHHhhhcc
Q 006902 287 QNTTSKVVFTTRFIDVCGSMEK 308 (626)
Q Consensus 287 ~~~~s~iivTtr~~~va~~~~~ 308 (626)
...|-..|+.|.....|..+..
T Consensus 183 A~eGmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 183 AEEGMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred HHcCCeEEEEechhHHHHHhhh
Confidence 2346667777777777765543
No 257
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.41 E-value=0.091 Score=51.39 Aligned_cols=129 Identities=15% Similarity=0.050 Sum_probs=67.6
Q ss_pred HHHHHHHHhc-CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhC-CCCCcc--
Q 006902 167 LEQVWRCLAE-ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIG-LFDDSW-- 242 (626)
Q Consensus 167 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~-~~~~~~-- 242 (626)
.+.++..|.. ....-++|+|..|.|||||.+.+.... ......+++.-..-... +-..+++.... .+....
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~----~~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL----STGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc----CCCCceEEECCEEeecc-hhHHHHHHHhcccccccccc
Confidence 3444444443 345789999999999999999999866 22233444421111000 11123333221 111110
Q ss_pred --CCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHHh
Q 006902 243 --KNKSFEEKAVDILRRL-GEKRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVCG 304 (626)
Q Consensus 243 --~~~~~~~~~~~l~~~l-~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va~ 304 (626)
+..+....+.-+...+ ...+-++++|.+...+.+..+...+. .|..+|+||.+.++..
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~----~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH----AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh----CCCEEEEEechhHHHH
Confidence 0000001111222222 24677899999976665555543332 4778999999776644
No 258
>PRK07667 uridine kinase; Provisional
Probab=95.41 E-value=0.026 Score=52.53 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=29.4
Q ss_pred HHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 167 LEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 167 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+.|.+.+.. +...+|+|-|.+|.||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555554 345799999999999999999999877
No 259
>PTZ00301 uridine kinase; Provisional
Probab=95.41 E-value=0.016 Score=54.48 Aligned_cols=25 Identities=36% Similarity=0.658 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|+|.|.+|.||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 260
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.40 E-value=0.014 Score=55.03 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|+|+|.+|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 261
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.40 E-value=0.022 Score=63.88 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHHhc---------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE---------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|-++.++.+.+.+.. .....+-++|+.|+|||++|+.+....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999998888862 124578899999999999999998766
No 262
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.40 E-value=0.043 Score=59.09 Aligned_cols=73 Identities=26% Similarity=0.338 Sum_probs=53.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRR 257 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (626)
.-+|.-++|++|+||||||+.|..+. .| .++=|.+|..-+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45788999999999999999998865 23 3677888888777777777766554322 1
Q ss_pred h--CCCcEEEEEeCCCCc
Q 006902 258 L--GEKRFVLLLDDIWER 273 (626)
Q Consensus 258 l--~~k~~llvlDdv~~~ 273 (626)
+ .+++..||+|.+...
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 156777888888653
No 263
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.11 Score=52.99 Aligned_cols=88 Identities=22% Similarity=0.211 Sum_probs=47.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-LRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILR 256 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (626)
..++|+++|.+|+||||++..+.... . ...+ .+..++.... ....+-++..++.++.+.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 34799999999999999999998876 2 2222 3445554322 1122223344444554432 22344455544443
Q ss_pred HhCC-CcEEEEEeCC
Q 006902 257 RLGE-KRFVLLLDDI 270 (626)
Q Consensus 257 ~l~~-k~~llvlDdv 270 (626)
.-.. +.=++++|-.
T Consensus 315 lk~~~~~DvVLIDTa 329 (436)
T PRK11889 315 FKEEARVDYILIDTA 329 (436)
T ss_pred HHhccCCCEEEEeCc
Confidence 3221 2235566655
No 264
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.39 E-value=0.082 Score=52.70 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc---CCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW---KNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (626)
.-+++-|+|..|+||||||..+.... +..-..++|++....++.. .++.++.+.+.. .....++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 46799999999999999999999876 3344579999998876654 344555543321 223445555555
Q ss_pred HHHhCC-CcEEEEEeCCCCccccccc
Q 006902 255 LRRLGE-KRFVLLLDDIWERVDLTEV 279 (626)
Q Consensus 255 ~~~l~~-k~~llvlDdv~~~~~~~~l 279 (626)
...++. .--++|+|.|-....-.++
T Consensus 124 e~lirsg~~~lVVvDSv~al~p~~E~ 149 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAALVPKAEL 149 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-B-HHHH
T ss_pred HHHhhcccccEEEEecCcccCCHHHH
Confidence 555543 3447888998655333333
No 265
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.39 E-value=0.047 Score=58.23 Aligned_cols=93 Identities=25% Similarity=0.291 Sum_probs=52.7
Q ss_pred cccchHH--HHHHHHHHHhcC--CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCC--CeEEEEEecCccCHHHHHHHHH
Q 006902 159 TIVGLQS--QLEQVWRCLAEE--SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNF--DCVIWVVVSKELRLEKIQEDIG 232 (626)
Q Consensus 159 ~~vGr~~--~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--~~~~wv~~s~~~~~~~l~~~i~ 232 (626)
.++|... ....+.++.... ...-+.|+|..|+|||+|++.+.+... ..+ -.+++++.. .+..++.
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~v~yi~~~------~~~~~~~ 194 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYIL---EKNPNAKVVYVTSE------KFTNDFV 194 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEEEHH------HHHHHHH
Confidence 3456433 233334443322 235688999999999999999999872 332 235566433 3344444
Q ss_pred HHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 006902 233 KKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWE 272 (626)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~ 272 (626)
..+... .. ..+.+.+. +.-+|++||+..
T Consensus 195 ~~~~~~-------~~----~~~~~~~~-~~dlLiiDDi~~ 222 (450)
T PRK00149 195 NALRNN-------TM----EEFKEKYR-SVDVLLIDDIQF 222 (450)
T ss_pred HHHHcC-------cH----HHHHHHHh-cCCEEEEehhhh
Confidence 444211 11 22333443 234789999964
No 266
>PRK10867 signal recognition particle protein; Provisional
Probab=95.39 E-value=0.095 Score=54.81 Aligned_cols=91 Identities=20% Similarity=0.275 Sum_probs=50.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCH--HHHHHHHHHHhCCCCCcc-CCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRL--EKIQEDIGKKIGLFDDSW-KNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~--~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l 254 (626)
...+|.++|.+|+||||.|..+.... ..... ..++.|+.. .+.. .+-++..++..+.+.... ...+........
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l-~~~~G-~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL-KKKKK-KKVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhcC-CcEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 46899999999999999888888766 22211 234444433 2332 223444566665542211 123444555444
Q ss_pred HHHhCCCcE-EEEEeCCC
Q 006902 255 LRRLGEKRF-VLLLDDIW 271 (626)
Q Consensus 255 ~~~l~~k~~-llvlDdv~ 271 (626)
.+....+.| ++|+|-.-
T Consensus 176 ~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 444444444 66667653
No 267
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.39 E-value=0.094 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999877
No 268
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.37 E-value=0.042 Score=62.45 Aligned_cols=46 Identities=30% Similarity=0.382 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.++.++.+.+++.- ...+-+.++|.+|+|||+||+.+.+..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 3578999999998887742 134568899999999999999999876
No 269
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.36 E-value=0.037 Score=53.06 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=30.7
Q ss_pred cchHHH-HHHHHHHHhc-CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 161 VGLQSQ-LEQVWRCLAE-ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 161 vGr~~~-~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|..+. +..+.++... .....+.|+|..|+|||+||+.+++..
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 455433 3444444442 345678899999999999999999976
No 270
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.36 E-value=0.02 Score=64.23 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++||++++.++++.|......-+-++|.+|+|||++|+.+....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999988655556789999999999999999865
No 271
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.36 E-value=0.015 Score=43.85 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+|.|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 272
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.35 E-value=0.048 Score=49.68 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=60.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhc--cC---CCC--eEEEEEecCccCHHHHHHHHHHHhCCCCC----ccCCcC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLEN--QN---NFD--CVIWVVVSKELRLEKIQEDIGKKIGLFDD----SWKNKS 246 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~---~F~--~~~wv~~s~~~~~~~l~~~i~~~l~~~~~----~~~~~~ 246 (626)
.-.+++|+|..|.|||||.+.+..+.-++ .. .|. .+.|+ .+ .+.+..++.... .....+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 45789999999999999999986421011 11 111 12232 22 355666665321 011112
Q ss_pred H-HHHHHHHHHHhCCC--cEEEEEeCCCCccc---cccccCCCCCC-CCCCcEEEEecCChHHHh
Q 006902 247 F-EEKAVDILRRLGEK--RFVLLLDDIWERVD---LTEVGVPLPSP-QNTTSKVVFTTRFIDVCG 304 (626)
Q Consensus 247 ~-~~~~~~l~~~l~~k--~~llvlDdv~~~~~---~~~l~~~~~~~-~~~~s~iivTtr~~~va~ 304 (626)
. +...-.+...+..+ +-++++|+--..-+ ...+...+. . ...|..||++|.+.+...
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~-~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIK-GLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhCCCEEEEEeCCHHHHH
Confidence 1 22223345555556 67888898754322 222222221 1 113667888888776654
No 273
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.34 E-value=0.032 Score=48.70 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=29.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK 220 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 220 (626)
++|.|+|..|+|||||++.+.+... ++.+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999983 45666555666554
No 274
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.33 E-value=0.053 Score=57.27 Aligned_cols=73 Identities=21% Similarity=0.163 Sum_probs=45.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhC
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLG 259 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (626)
.-+-|+|..|+|||+|++++.+... .....+++++ .+.+...+...+... . ...++..+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 5678999999999999999999872 2223355654 334445555554311 1 122333333
Q ss_pred CCcEEEEEeCCCCc
Q 006902 260 EKRFVLLLDDIWER 273 (626)
Q Consensus 260 ~k~~llvlDdv~~~ 273 (626)
..-++++||+...
T Consensus 202 -~~dvLiIDDiq~l 214 (445)
T PRK12422 202 -NVDALFIEDIEVF 214 (445)
T ss_pred -cCCEEEEcchhhh
Confidence 3347888998654
No 275
>PRK14974 cell division protein FtsY; Provisional
Probab=95.32 E-value=0.18 Score=50.88 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=36.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccC--HHHHHHHHHHHhCCC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELR--LEKIQEDIGKKIGLF 238 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~--~~~l~~~i~~~l~~~ 238 (626)
+..++.++|+.|+||||++..+.... . ...+ .++.+.. ..+. ...-++..+..++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCc
Confidence 46899999999999999888888776 2 2333 3344432 2222 223345566666654
No 276
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.27 E-value=0.059 Score=49.50 Aligned_cols=121 Identities=22% Similarity=0.299 Sum_probs=64.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEE---ecCccCHHHHHH------HHHHHhCCCCC---ccCCc
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVV---VSKELRLEKIQE------DIGKKIGLFDD---SWKNK 245 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~s~~~~~~~l~~------~i~~~l~~~~~---~~~~~ 245 (626)
.-.+++|+|..|.|||||++.+.... ......+++. +.. .+...... ++++.++.... .....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 45789999999999999999998765 2334444442 221 12222211 24455554321 01111
Q ss_pred CH-HHHHHHHHHHhCCCcEEEEEeCCCCccc---cccccCCCCC-CCCCCcEEEEecCChHHH
Q 006902 246 SF-EEKAVDILRRLGEKRFVLLLDDIWERVD---LTEVGVPLPS-PQNTTSKVVFTTRFIDVC 303 (626)
Q Consensus 246 ~~-~~~~~~l~~~l~~k~~llvlDdv~~~~~---~~~l~~~~~~-~~~~~s~iivTtr~~~va 303 (626)
+. +...-.+.+.+...+-++++|+-...-+ ...+...+.. ....+..||++|.+.+..
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22 2233445666667778899998764322 2222222210 111256788888876654
No 277
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.22 E-value=0.036 Score=58.07 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++||++.++.+...+..+. -|-|.|.+|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence 568999999999988887653 46789999999999999999876
No 278
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.16 E-value=0.92 Score=47.31 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVV 218 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 218 (626)
...+|.++|..|+||||++..+.... . +..+ .++.|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l-~-~~G~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY-Q-RKGF-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H-HCCC-CEEEEcC
Confidence 46799999999999999999988776 3 2233 3455543
No 279
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.14 E-value=0.067 Score=47.09 Aligned_cols=104 Identities=24% Similarity=0.300 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRR 257 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (626)
.-.+++|+|..|.|||||++.+.... ......+|+.-.. .++.-. +-..-+...-.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~~-------------~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGSTV-------------KIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCeE-------------EEEEEc---cCCHHHHHHHHHHHH
Confidence 45789999999999999999998765 2234445442100 000000 001112223335566
Q ss_pred hCCCcEEEEEeCCCCccc---cccccCCCCCCCCCCcEEEEecCChHHHh
Q 006902 258 LGEKRFVLLLDDIWERVD---LTEVGVPLPSPQNTTSKVVFTTRFIDVCG 304 (626)
Q Consensus 258 l~~k~~llvlDdv~~~~~---~~~l~~~~~~~~~~~s~iivTtr~~~va~ 304 (626)
+..++-++++|+-...-+ ...+...+. .. +..|+++|.+.+.+.
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~-~~--~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALK-EY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHH-Hc--CCEEEEEECCHHHHH
Confidence 666777889998754322 222222222 11 246777877766543
No 280
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.14 E-value=0.057 Score=55.44 Aligned_cols=75 Identities=21% Similarity=0.300 Sum_probs=49.7
Q ss_pred CCcccchHHHHHHHHHHHhcC--------------CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCC---CeEEEEEec
Q 006902 157 EPTIVGLQSQLEQVWRCLAEE--------------SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNF---DCVIWVVVS 219 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~s 219 (626)
+..++|.++.++.+.-.+..+ ..+-|.++|++|+|||++|+.+.... ...| +..-+....
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vdat~~~e~g 87 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVG 87 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEeecceeecCC
Confidence 356899999999887666531 23678899999999999999999877 2333 222122211
Q ss_pred -CccCHHHHHHHHHHH
Q 006902 220 -KELRLEKIQEDIGKK 234 (626)
Q Consensus 220 -~~~~~~~l~~~i~~~ 234 (626)
...+.+.+.+.+...
T Consensus 88 ~vG~dvE~i~r~l~e~ 103 (441)
T TIGR00390 88 YVGRDVESMVRDLTDA 103 (441)
T ss_pred cccCCHHHHHHHHHHH
Confidence 123566666666554
No 281
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.13 E-value=0.02 Score=50.34 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
||.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999998765
No 282
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.12 E-value=0.0057 Score=57.61 Aligned_cols=67 Identities=24% Similarity=0.229 Sum_probs=37.3
Q ss_pred cccccccccceeeccc--CCcceEeeccccccccccCccccCccCEEEEeCCC--CCccccccccCCCccEEEEeccCcc
Q 006902 445 AFADLNHLNELWIYRG--FELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCT--KLKDSTFLVFAPNLKSLTLFDCGAM 520 (626)
Q Consensus 445 ~l~~~~~L~~L~l~~~--~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~--~l~~l~~l~~L~~L~~L~L~~~~~l 520 (626)
++..+++|++|.++.. .....+.+-. ..+|+|++|+++++. .++.++++..+++|..|++.+|...
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~----------e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLA----------EKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehh----------hhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 4555667777777643 1111111111 144777777777752 1344556777777777777777543
Q ss_pred c
Q 006902 521 E 521 (626)
Q Consensus 521 ~ 521 (626)
.
T Consensus 130 ~ 130 (260)
T KOG2739|consen 130 N 130 (260)
T ss_pred c
Confidence 3
No 283
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.11 E-value=0.1 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++.++|.+|+||||++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998755
No 284
>PRK03839 putative kinase; Provisional
Probab=95.10 E-value=0.019 Score=52.78 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|+|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999977
No 285
>PRK06762 hypothetical protein; Provisional
Probab=95.09 E-value=0.022 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999999999999998765
No 286
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.32 Score=49.47 Aligned_cols=88 Identities=22% Similarity=0.149 Sum_probs=50.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL-RLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILR 256 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (626)
+.+++.++|+.|+||||++..+.... ..+ . ..+.+++..... ....-++..++.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~-g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ-N-RTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc-C-CeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46899999999999999999988766 222 2 346667664322 223344455555554432 22344555444433
Q ss_pred HhC-CCcEEEEEeCC
Q 006902 257 RLG-EKRFVLLLDDI 270 (626)
Q Consensus 257 ~l~-~k~~llvlDdv 270 (626)
.-. +..=++++|-.
T Consensus 280 l~~~~~~D~VLIDTA 294 (407)
T PRK12726 280 MTYVNCVDHILIDTV 294 (407)
T ss_pred HHhcCCCCEEEEECC
Confidence 321 23345666765
No 287
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.05 E-value=0.068 Score=52.33 Aligned_cols=127 Identities=21% Similarity=0.174 Sum_probs=69.2
Q ss_pred cchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCC
Q 006902 161 VGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDD 240 (626)
Q Consensus 161 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~ 240 (626)
.|...+..+.+..+......++.|.|..|.||||+++.+.+.. ...-..++.+.-...+.... ..++...
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~-----~~q~~v~-- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPG-----INQVQVN-- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCC-----ceEEEeC--
Confidence 4555544444555555566789999999999999999887765 22112233332111111111 0111111
Q ss_pred ccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHHh
Q 006902 241 SWKNKSFEEKAVDILRRLGEKRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVCG 304 (626)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va~ 304 (626)
..........+...++...=.++++++.+.+....+... ...|-.++-|....++..
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a----a~tGh~v~tTlHa~~~~~ 188 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA----ALTGHLVLSTLHTNDAPG 188 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH----HHcCCcEEEEeccCCHHH
Confidence 111123456677778878888999999887654433222 123444555555544444
No 288
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.05 E-value=0.006 Score=57.57 Aligned_cols=251 Identities=18% Similarity=0.096 Sum_probs=131.7
Q ss_pred Cccccccccccccc-----ccchHHhhhcccchhcccCCC--C-ccccchh------hhcCCCcccEEEccCCCCCcccC
Q 006902 311 SSLELLDISHTYIQ-----ELPEELKLLVNLKCLNLRGTG--Q-LNKIPRQ------LISKFSRLRVLRMLGTGPFSFDE 376 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~-----~LP~~i~~L~~L~~L~l~~~~--~-l~~lP~~------~i~~L~~L~~L~l~~~~~~~~~~ 376 (626)
..+..++||+|.|. .|-..|.+-.+|+.-+++.-. . ...+|++ ++.++++|+..++++|.+.. ..
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~-~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS-EF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc-cc
Confidence 35667788888663 455666666777777766541 1 1123332 15677888888888877642 11
Q ss_pred CCCcccccCCccchhHHhhccCCCceEEEEEechh---------hHHHHhhc--cccccceeEEEEeccCCCccccc--c
Q 006902 377 APEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH---------ALQILLSS--NKLKSCIRSLFLWLAGDATSIVD--A 443 (626)
Q Consensus 377 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~---------~~~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~--~ 443 (626)
| .....-+.+-+.|.+|.+.+++.. .+..+... ..-.+.|+......+.-.+.... .
T Consensus 109 ~----------e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 109 P----------EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred c----------hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH
Confidence 1 122333455677888877765421 11111111 11134566655443322211101 1
Q ss_pred ccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCcccc-----ccccCCCccEEEEeccC
Q 006902 444 TAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST-----FLVFAPNLKSLTLFDCG 518 (626)
Q Consensus 444 ~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-----~l~~L~~L~~L~L~~~~ 518 (626)
..+....+|+.+.|..+. ++ |..... ...-....+.+|+.|+|.++.....-+ .+..-+.|+.|.+.+|-
T Consensus 179 ~~l~sh~~lk~vki~qNg-Ir---pegv~~-L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 179 ALLESHENLKEVKIQQNG-IR---PEGVTM-LAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHhhcCceeEEeeecC-cC---cchhHH-HHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 145556788888887543 32 111100 000112367899999999864332211 24556779999999983
Q ss_pred ccccccccCccccccccCCCCCcCCccceeecCCcccccccc-------CCCCCCCCccEEEecCCCCCCCCC
Q 006902 519 AMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIY-------WKPLPFTHLKEMEVSGCNQLEKHP 584 (626)
Q Consensus 519 ~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~-------~~~~~lp~L~~L~i~~C~~L~~lP 584 (626)
+..-+..++... +.-..+|+|..|.+.....-..+. +...++|-|..|.+.+ ..++.+.
T Consensus 254 -ls~~G~~~v~~~-----f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~~ 319 (388)
T COG5238 254 -LSNEGVKSVLRR-----FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKELA 319 (388)
T ss_pred -hccccHHHHHHH-----hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-CcchhHH
Confidence 332222111100 122447888888887654332221 1346788888888876 3555543
No 289
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.04 E-value=0.061 Score=49.33 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=60.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCC-CCC-c----------cCCc
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGL-FDD-S----------WKNK 245 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~-~~~-~----------~~~~ 245 (626)
.-.+++|+|..|.|||||++.+.... . .-...+++.-. ++......+...++. ... . ....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL-K---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC-C---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 45689999999999999999998765 2 22233443211 111111111111211 000 0 0011
Q ss_pred CH-HHHHHHHHHHhCCCcEEEEEeCCCCccc---cccccCCCCCCCCCCcEEEEecCChHHHh
Q 006902 246 SF-EEKAVDILRRLGEKRFVLLLDDIWERVD---LTEVGVPLPSPQNTTSKVVFTTRFIDVCG 304 (626)
Q Consensus 246 ~~-~~~~~~l~~~l~~k~~llvlDdv~~~~~---~~~l~~~~~~~~~~~s~iivTtr~~~va~ 304 (626)
+. +...-.+...+..++-++++|+-...-+ ...+...+. ....+..||++|.+.+...
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF-EVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecCHHHHH
Confidence 11 2223345566667778899999865422 112211111 1113567888888776554
No 290
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.02 E-value=0.038 Score=56.64 Aligned_cols=102 Identities=23% Similarity=0.187 Sum_probs=56.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRR 257 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (626)
....+-|+|..|.|||.|++++.+.. .........+++ +.+....+++..+.. .....+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~----~se~f~~~~v~a~~~-----------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL----TSEDFTNDFVKALRD-----------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec----cHHHHHHHHHHHHHh-----------hhHHHHHHh
Confidence 47789999999999999999999988 344442222322 233444444443321 122345555
Q ss_pred hCCCcEEEEEeCCCCcc---ccc-cccCCCCCCCCCCcEEEEecCC
Q 006902 258 LGEKRFVLLLDDIWERV---DLT-EVGVPLPSPQNTTSKVVFTTRF 299 (626)
Q Consensus 258 l~~k~~llvlDdv~~~~---~~~-~l~~~~~~~~~~~s~iivTtr~ 299 (626)
. .-=++++||++-.. .|+ .+...|-.-...|-.||+|++.
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 5 33377889986532 222 2222221011223378888863
No 291
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.98 E-value=0.23 Score=46.42 Aligned_cols=46 Identities=28% Similarity=0.461 Sum_probs=37.6
Q ss_pred CcccchHHHHHHHHHHH----hcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCL----AEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.|..++.+++-- .+....-|-+||.-|.||+.|++++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 46799888887776543 34466778999999999999999999988
No 292
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.94 E-value=0.024 Score=52.43 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+..+|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 293
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.91 E-value=1.7 Score=44.58 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=40.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc--CHHHHHHHHHHHhCCCCC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL--RLEKIQEDIGKKIGLFDD 240 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~l~~~i~~~l~~~~~ 240 (626)
...||-.+|.-|.||||.|-.+.+.+. . ....+-+...+.+ ...+=++.++++++.+.-
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk---k-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK---K-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH---H-cCCceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 467899999999999999999988883 2 3333444433333 444557788888876543
No 294
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.91 E-value=0.34 Score=52.30 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=74.2
Q ss_pred CcccchHHHHHHHHHHHhc-----CCCeEEEEEcCCCchHHHHHHHHHHHHhh--c---cCCCCeEEEEEecCccCHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTRINNKFLE--N---QNNFDCVIWVVVSKELRLEKI 227 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~---~~~F~~~~wv~~s~~~~~~~l 227 (626)
..+-+|+.+..+|-.++.. +....+-|.|.+|.|||..+..|.+.... . -..|+ .+.|..-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 5567899999999888864 23447889999999999999999996631 1 22333 344555555678999
Q ss_pred HHHHHHHhCCCCCccCCcCHHHHHHHHHHHhC-----CCcEEEEEeCCCC
Q 006902 228 QEDIGKKIGLFDDSWKNKSFEEKAVDILRRLG-----EKRFVLLLDDIWE 272 (626)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~llvlDdv~~ 272 (626)
+..|...+..... .-......+..+.. .+.+++++|++..
T Consensus 475 Y~~I~~~lsg~~~-----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~ 519 (767)
T KOG1514|consen 475 YEKIWEALSGERV-----TWDAALEALNFRFTVPKPKRSTTVVLIDELDI 519 (767)
T ss_pred HHHHHHhcccCcc-----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHH
Confidence 9999999876543 22233333444443 3578888888743
No 295
>PTZ00035 Rad51 protein; Provisional
Probab=94.90 E-value=0.33 Score=49.27 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhcc----CCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc-------cCCcC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQ----NNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS-------WKNKS 246 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-------~~~~~ 246 (626)
.-.++-|+|..|.|||+|+.++.-.. ... ..=..++|++....|+.+++ .++++.++..... ....+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 56889999999999999999887655 211 12235779998887777774 4445655543210 01122
Q ss_pred HHHHHHH---HHHHhC-CCcEEEEEeCCC
Q 006902 247 FEEKAVD---ILRRLG-EKRFVLLLDDIW 271 (626)
Q Consensus 247 ~~~~~~~---l~~~l~-~k~~llvlDdv~ 271 (626)
.++.... +...+. .+--++|+|.+.
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 2333332 223332 344578888874
No 296
>COG3903 Predicted ATPase [General function prediction only]
Probab=94.88 E-value=0.029 Score=56.63 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=63.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCe-EEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDC-VIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILR 256 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (626)
..+-+.++|.|||||||++-++.. . ...|.. ++++......|...+.-.+...++.+.. +-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHH
Confidence 457899999999999999999988 4 466654 6666666666666666666666776543 22334455667
Q ss_pred HhCCCcEEEEEeCCCCc
Q 006902 257 RLGEKRFVLLLDDIWER 273 (626)
Q Consensus 257 ~l~~k~~llvlDdv~~~ 273 (626)
...+++.++|+||..+.
T Consensus 84 ~~~~rr~llvldncehl 100 (414)
T COG3903 84 RIGDRRALLVLDNCEHL 100 (414)
T ss_pred HHhhhhHHHHhcCcHHH
Confidence 77789999999998654
No 297
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.88 E-value=0.054 Score=46.49 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 165 SQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 165 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++.+++-+.|.. ....+|.+.|.-|.||||+++.+....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 445555555554 245689999999999999999999987
No 298
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.87 E-value=0.01 Score=56.02 Aligned_cols=110 Identities=22% Similarity=0.155 Sum_probs=56.3
Q ss_pred cccccccccccccccchHHhhhcccchhcccCC--CCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGT--GQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~--~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.|++|++.++.+..+ ..+..|.+|++|.++.| .-...++-. +.++++|++|++++|++.. ..
T Consensus 44 ~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~--------------ls 107 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD--------------LS 107 (260)
T ss_pred chhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc--------------cc
Confidence 455565555543322 12235667888888777 222344443 4555888888888777541 23
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhc-cccccceeEEEEeccCCC
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSS-NKLKSCIRSLFLWLAGDA 437 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~ 437 (626)
.+..+..|.+|..|.+..+....+...... ..++++|+.|+-..+.+.
T Consensus 108 tl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 108 TLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred ccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 334455555555555554443322211111 122456666665555443
No 299
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.87 E-value=0.13 Score=53.91 Aligned_cols=87 Identities=22% Similarity=0.257 Sum_probs=47.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL-RLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRR 257 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (626)
.+++.++|++|+||||++..+.... .....-..+..++....- ....-++...+.++.+.. ...+.......+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 4689999999999999998887766 211223456666654321 112223333444554432 22233344444433
Q ss_pred hCCCcEEEEEeCC
Q 006902 258 LGEKRFVLLLDDI 270 (626)
Q Consensus 258 l~~k~~llvlDdv 270 (626)
+.+ .=++++|..
T Consensus 297 ~~~-~DlVlIDt~ 308 (424)
T PRK05703 297 LRD-CDVILIDTA 308 (424)
T ss_pred hCC-CCEEEEeCC
Confidence 333 345677755
No 300
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.86 E-value=0.023 Score=52.07 Aligned_cols=49 Identities=31% Similarity=0.436 Sum_probs=34.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGK 233 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~ 233 (626)
..+|+|-||=|+||||||+.+.+.. . |. +++-.+.+.+-++....++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~----~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G----FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C----Cc-eeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999988 2 22 233345555555555555443
No 301
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.86 E-value=0.043 Score=50.06 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=61.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCC-C-C-CccCC--------cC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGL-F-D-DSWKN--------KS 246 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~-~-~-~~~~~--------~~ 246 (626)
.-.+++|+|..|.|||||++.+.... ......+++.-....+.. ..+...++. . . .-+.. -+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 45689999999999999999998765 223444554321110100 111111111 0 0 00011 11
Q ss_pred HH-HHHHHHHHHhCCCcEEEEEeCCCCcccc---ccc---cCCCCCCCCCCcEEEEecCChHHHh
Q 006902 247 FE-EKAVDILRRLGEKRFVLLLDDIWERVDL---TEV---GVPLPSPQNTTSKVVFTTRFIDVCG 304 (626)
Q Consensus 247 ~~-~~~~~l~~~l~~k~~llvlDdv~~~~~~---~~l---~~~~~~~~~~~s~iivTtr~~~va~ 304 (626)
.. ...-.+...+..++=++++|+-...-+. ..+ ...+. . .|..||++|.+...+.
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~--~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK-K--EGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-H--CCCEEEEECCCHHHHH
Confidence 11 2223466667778888999997654221 112 22222 1 2567888888876554
No 302
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.84 E-value=0.26 Score=47.25 Aligned_cols=48 Identities=27% Similarity=0.292 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQED 230 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~ 230 (626)
.-.++.|.|.+|.||||+|.++..... ..-..++|++... +.+.+.+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~--~~~~i~~~ 66 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEE--SRESIIRQ 66 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccC--CHHHHHHH
Confidence 567899999999999999998765441 2335678887644 33444433
No 303
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.84 E-value=0.0083 Score=50.75 Aligned_cols=86 Identities=20% Similarity=0.283 Sum_probs=59.7
Q ss_pred cccccccccccccccchHHh---hhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCcc
Q 006902 312 SLELLDISHTYIQELPEELK---LLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGE 388 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~---~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 388 (626)
.+-.+||+.|.+-.+|+... ...+|...+|++| .++.+|+.+..+.+-+.+|++.++.+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neis---------------- 90 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEIS---------------- 90 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhh----------------
Confidence 44567888887666655544 4455666788888 578888875556667888888887754
Q ss_pred chhHHhhccCCCceEEEEEechhhHH
Q 006902 389 VLIQELLGLKYLEVLELTLGSYHALQ 414 (626)
Q Consensus 389 ~~~~~l~~L~~L~~L~i~~~~~~~~~ 414 (626)
..|.++..++.|+.|++..+......
T Consensus 91 dvPeE~Aam~aLr~lNl~~N~l~~~p 116 (177)
T KOG4579|consen 91 DVPEELAAMPALRSLNLRFNPLNAEP 116 (177)
T ss_pred hchHHHhhhHHhhhcccccCccccch
Confidence 56677888888888887766554433
No 304
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.2 Score=51.73 Aligned_cols=88 Identities=20% Similarity=0.276 Sum_probs=50.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhcc--CCCCeEEEEEecCccCHH--HHHHHHHHHhCCCCCccCCcCHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQ--NNFDCVIWVVVSKELRLE--KIQEDIGKKIGLFDDSWKNKSFEEKAVD 253 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~~~~wv~~s~~~~~~--~l~~~i~~~l~~~~~~~~~~~~~~~~~~ 253 (626)
...+|.++|..|+||||.+..+.... ... .+=..+..++... +... .-++..++.++.+.. ...........
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~-~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY-GINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHH
Confidence 35799999999999999999888776 221 1122455555543 3322 225555666666432 22333444443
Q ss_pred HHHHhCCCcEEEEEeCCC
Q 006902 254 ILRRLGEKRFVLLLDDIW 271 (626)
Q Consensus 254 l~~~l~~k~~llvlDdv~ 271 (626)
+.. +. +.-++++|..-
T Consensus 249 L~~-~~-~~DlVLIDTaG 264 (388)
T PRK12723 249 ITQ-SK-DFDLVLVDTIG 264 (388)
T ss_pred HHH-hC-CCCEEEEcCCC
Confidence 433 33 34567777763
No 305
>PRK04040 adenylate kinase; Provisional
Probab=94.79 E-value=0.028 Score=51.95 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|.|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 306
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.79 E-value=0.073 Score=52.20 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGK 233 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~ 233 (626)
.-+++.|+|.+|+|||++|.++.... .+....++||+..+. .+.+.+.+.+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 67899999999999999999998877 466888999988874 4555555443
No 307
>PRK04328 hypothetical protein; Provisional
Probab=94.79 E-value=0.16 Score=49.25 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE 221 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 221 (626)
.-.++.|.|.+|.|||+||.++.... ...-+.++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 56789999999999999999976553 133456888887664
No 308
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.79 E-value=0.05 Score=49.62 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998765
No 309
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.78 E-value=0.065 Score=49.87 Aligned_cols=50 Identities=28% Similarity=0.501 Sum_probs=33.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCC
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFD 239 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~ 239 (626)
.|+|.|-||+||||+|..+..... -+..| .+.=|+...++++. .+++.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~-~~~~~-~VLvVDaDpd~nL~-------~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL-SKGGY-NVLVVDADPDSNLP-------EALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH-hcCCc-eEEEEeCCCCCChH-------HhcCCCC
Confidence 689999999999999999666552 22223 35556666665544 4556554
No 310
>PRK09087 hypothetical protein; Validated
Probab=94.71 E-value=0.12 Score=49.34 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+.+.|+|..|+|||+|++.++...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999888765
No 311
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.71 E-value=0.079 Score=47.92 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=59.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEE-------EecCccCH--HHHHHHHHHHhCCCCCccCCcCHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWV-------VVSKELRL--EKIQEDIGKKIGLFDDSWKNKSFE 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv-------~~s~~~~~--~~l~~~i~~~l~~~~~~~~~~~~~ 248 (626)
.-.+++|+|..|.|||||++.+.... .. ....+++ .+.+.+.. ..+...+.-. ... .-..-+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~--~LS~G~ 96 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW-PW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDD--VLSGGE 96 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-CC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCC--CCCHHH
Confidence 45689999999999999999998865 21 1122221 12332211 1222222210 111 111222
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCccc---cccccCCCCCCCCCCcEEEEecCChHHHh
Q 006902 249 EKAVDILRRLGEKRFVLLLDDIWERVD---LTEVGVPLPSPQNTTSKVVFTTRFIDVCG 304 (626)
Q Consensus 249 ~~~~~l~~~l~~k~~llvlDdv~~~~~---~~~l~~~~~~~~~~~s~iivTtr~~~va~ 304 (626)
...-.+.+.+..++=++++|+--..-+ ...+...+. .. +..||++|.+.....
T Consensus 97 ~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~-~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 97 QQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-EL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH-Hh--CCEEEEEeCChhHHh
Confidence 333445556666777788998654322 222222222 11 356788887766554
No 312
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.71 E-value=0.064 Score=58.92 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=56.3
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhC
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIG 236 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (626)
..++|.++.++.+...+... +-+.++|.+|+||||+|+.+.+... ..+++..+|..-+. .+...+++.++..++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np~-~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNPE-DPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCCC-cchHHHHHHHHHhcC
Confidence 56789999888888877765 3688899999999999999988762 34467788876543 367777777776554
No 313
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.70 E-value=0.082 Score=46.14 Aligned_cols=44 Identities=27% Similarity=0.292 Sum_probs=32.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDI 231 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i 231 (626)
|-++|..|+|||+||+.+.... .. ...-+.++...+..++....
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g~~ 45 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIGSY 45 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEeccccccccceeee
Confidence 5689999999999999999876 12 24456788877887776543
No 314
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.69 E-value=0.35 Score=48.63 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=40.9
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..++.+.+.+..++. ...-++|..|+||+++|..+....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999988874 789999999999999999988776
No 315
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.68 E-value=0.27 Score=49.99 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=36.2
Q ss_pred cccc-hHHHHHHHHHHHhcCC-CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 159 TIVG-LQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 159 ~~vG-r~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++| -+..++.+.+.+..++ ....-++|+.|+||||+|+.+....
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4567 6667778888887765 4567899999999999999998776
No 316
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.11 Score=50.50 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=52.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhcc--CCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQ--NNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILR 256 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (626)
-++|-+.|++|.|||+|.++++.+. .++ ..+....-+.++. ..+..++... .......+.++|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4788899999999999999999988 443 3444444444332 2333333322 33456677778888
Q ss_pred HhCCCcE--EEEEeCCCC
Q 006902 257 RLGEKRF--VLLLDDIWE 272 (626)
Q Consensus 257 ~l~~k~~--llvlDdv~~ 272 (626)
.+.++.. ++.+|.|..
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 8876654 446788854
No 317
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.68 E-value=0.022 Score=53.27 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+|+|.|.+|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 318
>PRK00625 shikimate kinase; Provisional
Probab=94.64 E-value=0.029 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.++||.|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 319
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.62 E-value=0.16 Score=45.08 Aligned_cols=116 Identities=24% Similarity=0.208 Sum_probs=59.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC---ccCHHHHHHHHHHHhC---CC-CCccCCcCHH----
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK---ELRLEKIQEDIGKKIG---LF-DDSWKNKSFE---- 248 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~---~~~~~~l~~~i~~~l~---~~-~~~~~~~~~~---- 248 (626)
..|-|++-.|.||||+|-...-... ...+ .+.++..-+ ......+++.+- .+. .. ...+...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 4788888899999999988877662 3333 344544322 233334433330 010 00 0001111111
Q ss_pred ---HHHHHHHHHhCCC-cEEEEEeCCCCc-----cccccccCCCCCCCCCCcEEEEecCCh
Q 006902 249 ---EKAVDILRRLGEK-RFVLLLDDIWER-----VDLTEVGVPLPSPQNTTSKVVFTTRFI 300 (626)
Q Consensus 249 ---~~~~~l~~~l~~k-~~llvlDdv~~~-----~~~~~l~~~~~~~~~~~s~iivTtr~~ 300 (626)
......++.+... -=|+|||++-.. .+.+.+...+. ....+..||+|.|+.
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~-~rp~~~evIlTGr~~ 138 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK-AKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH-cCCCCCEEEEECCCC
Confidence 1223344444443 449999998543 22233333332 333567899999973
No 320
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.13 Score=53.39 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=35.8
Q ss_pred CcccchHH---HHHHHHHHHhcC--------C-CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQS---QLEQVWRCLAEE--------S-AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~---~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++-|.|+ ++++|+++|.+. . .+-|-++|++|.|||-||++|....
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 34567765 466778888762 2 4668899999999999999999877
No 321
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.59 E-value=0.18 Score=44.68 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|+.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 322
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.57 E-value=0.025 Score=47.74 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhccCCCC
Q 006902 182 IGLYGMGGVGKTTLLTRINNKFLENQNNFD 211 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~ 211 (626)
|-|+|.+|+||||+|+.+.... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 5689999999999999999876 56664
No 323
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.28 Score=49.69 Aligned_cols=94 Identities=22% Similarity=0.352 Sum_probs=57.5
Q ss_pred HHHHHHhcC--CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc---C
Q 006902 169 QVWRCLAEE--SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW---K 243 (626)
Q Consensus 169 ~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---~ 243 (626)
++-..|-.+ .-.+|.|=|-+||||+||..++..+.. ..- .+.+|+--+. ..++ +--++.++.+.+.. .
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~a 153 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEeh
Confidence 344444443 567899999999999999999999882 222 6777765443 3332 23345666544321 2
Q ss_pred CcCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 006902 244 NKSFEEKAVDILRRLGEKRFVLLLDDIWE 272 (626)
Q Consensus 244 ~~~~~~~~~~l~~~l~~k~~llvlDdv~~ 272 (626)
..+.+.....+. +.++-++|+|-+..
T Consensus 154 Et~~e~I~~~l~---~~~p~lvVIDSIQT 179 (456)
T COG1066 154 ETNLEDIIAELE---QEKPDLVVIDSIQT 179 (456)
T ss_pred hcCHHHHHHHHH---hcCCCEEEEeccce
Confidence 233333333333 36788999999854
No 324
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.56 E-value=0.1 Score=53.68 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=38.9
Q ss_pred CCcccchHHHHHHHHHHHhcC--------------CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAEE--------------SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+..++|.++.++.+..++... ...-+.++|+.|+|||++|+.+....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 366899999999998888541 13678999999999999999998876
No 325
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.53 E-value=0.027 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998865
No 326
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.51 E-value=0.07 Score=48.66 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|.|.+|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 327
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.51 E-value=0.0089 Score=50.56 Aligned_cols=59 Identities=17% Similarity=0.348 Sum_probs=49.0
Q ss_pred cccccccccccccccchHHhhhc-ccchhcccCCCCccccchhhhcCCCcccEEEccCCCCC
Q 006902 312 SLELLDISHTYIQELPEELKLLV-NLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~-~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 372 (626)
+|...+|++|.++..|..+.... -+..|+++.| .+..+|.. +..++.|+.|+++.|.+.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPLN 113 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCccc
Confidence 66777889999998888876554 7888999988 68899988 889999999999988765
No 328
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.50 E-value=0.04 Score=50.51 Aligned_cols=23 Identities=35% Similarity=0.768 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 329
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.0045 Score=58.59 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=24.2
Q ss_pred cccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCC
Q 006902 314 ELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGP 371 (626)
Q Consensus 314 r~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 371 (626)
+.|++-||++..+ +-+.++..|+.|.|+-| +|+.+.. +..+++|+.|+++.|.+
T Consensus 22 kKLNcwg~~L~DI-sic~kMp~lEVLsLSvN-kIssL~p--l~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 22 KKLNCWGCGLDDI-SICEKMPLLEVLSLSVN-KISSLAP--LQRCTRLKELYLRKNCI 75 (388)
T ss_pred hhhcccCCCccHH-HHHHhcccceeEEeecc-ccccchh--HHHHHHHHHHHHHhccc
Confidence 3344444444443 12234444455555444 3444443 44444555555554443
No 330
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.49 E-value=0.012 Score=32.92 Aligned_cols=22 Identities=41% Similarity=0.735 Sum_probs=17.8
Q ss_pred ccchhcccCCCCccccchhhhcCC
Q 006902 335 NLKCLNLRGTGQLNKIPRQLISKF 358 (626)
Q Consensus 335 ~L~~L~l~~~~~l~~lP~~~i~~L 358 (626)
+|++||+++| .++.+|++ +++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTT-TTT-
T ss_pred CccEEECCCC-cCEeCChh-hcCC
Confidence 5899999999 68899987 6654
No 331
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.48 E-value=0.22 Score=52.68 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=37.6
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCC
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK-ELRLEKIQEDIGKKIGLFD 239 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~ 239 (626)
..|++++|..|+||||++..+.... ..+..-..+..++... .....+-++...+..+.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 4799999999999999999999876 3333222455555432 1223333455556555543
No 332
>COG3899 Predicted ATPase [General function prediction only]
Probab=94.48 E-value=0.075 Score=60.90 Aligned_cols=44 Identities=18% Similarity=0.453 Sum_probs=40.0
Q ss_pred ccchHHHHHHHHHHHhc---CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 160 IVGLQSQLEQVWRCLAE---ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 160 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++||+.+++.|...+.. +...|+.+.|..|||||++++.|....
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i 48 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPI 48 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHH
Confidence 68999999999998875 467799999999999999999999977
No 333
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.48 E-value=0.041 Score=49.61 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=60.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc--cCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE--LRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDIL 255 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (626)
.-.+++|+|..|.|||||.+.+.... ......+++.-... .+..+.. ...++.-. +-..-+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEEE---ecCHHHHHHHHHH
Confidence 45789999999999999999998765 33445555532111 1111111 11111100 1111222334455
Q ss_pred HHhCCCcEEEEEeCCCCccc---cccccCCCCCCCCCCcEEEEecCChHHH
Q 006902 256 RRLGEKRFVLLLDDIWERVD---LTEVGVPLPSPQNTTSKVVFTTRFIDVC 303 (626)
Q Consensus 256 ~~l~~k~~llvlDdv~~~~~---~~~l~~~~~~~~~~~s~iivTtr~~~va 303 (626)
+.+..++-++++|+-...-+ ...+...+......+..||++|.+...+
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 56666778889998765422 2222222210112356788888876643
No 334
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.47 E-value=0.062 Score=49.92 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEE
Q 006902 162 GLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVV 217 (626)
Q Consensus 162 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 217 (626)
.+..+-...++.|. ...++.+.|++|.|||.||.+..-+. -....|+..+++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 34555566677776 56799999999999999999888776 4568888887774
No 335
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.47 E-value=0.35 Score=50.30 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-LRLEKIQEDIGKKIGLFD 239 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~ 239 (626)
...+++++|..|+||||++..+.... ......+.+..+..... ....+-+....+.++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 34799999999999999999887754 22223334444443321 122223445555555544
No 336
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.45 E-value=0.026 Score=29.30 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=10.0
Q ss_pred CCccEEEecCCCCCCCCC
Q 006902 567 THLKEMEVSGCNQLEKHP 584 (626)
Q Consensus 567 p~L~~L~i~~C~~L~~lP 584 (626)
|+|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 567888888886 77776
No 337
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.44 E-value=0.071 Score=48.51 Aligned_cols=119 Identities=20% Similarity=0.218 Sum_probs=60.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc--cCHHHHHHHHHHHhCC-C-CCc-cCC------cC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE--LRLEKIQEDIGKKIGL-F-DDS-WKN------KS 246 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~l~~~i~~~l~~-~-~~~-~~~------~~ 246 (626)
.-.+++|+|..|.|||||.+.+.... ......+++.-... ..... ....++. . ... +.. .+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY----DPTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC----CCCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhC
Confidence 56789999999999999999998865 22334444321110 01111 1111211 0 000 000 01
Q ss_pred -HHHHHHHHHHHhCCCcEEEEEeCCCCccc---cccccCCCCCCCCCCcEEEEecCChHHHhh
Q 006902 247 -FEEKAVDILRRLGEKRFVLLLDDIWERVD---LTEVGVPLPSPQNTTSKVVFTTRFIDVCGS 305 (626)
Q Consensus 247 -~~~~~~~l~~~l~~k~~llvlDdv~~~~~---~~~l~~~~~~~~~~~s~iivTtr~~~va~~ 305 (626)
-+...-.+...+..++-++++|+-...-+ ...+...+. ....+..||++|.+.+....
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR-ALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHHh
Confidence 11122335566667778999998765422 122211111 11124668888887665543
No 338
>PRK05439 pantothenate kinase; Provisional
Probab=94.38 E-value=0.4 Score=47.75 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=44.8
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHH--HHHHhCCCCCccCCcCHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQED--IGKKIGLFDDSWKNKSFEEKAVDI 254 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~--i~~~l~~~~~~~~~~~~~~~~~~l 254 (626)
...-+|+|.|.+|+||||+|+.+.... .....-..+.-++...-+.....+.. ++..-+. ...-+.+.+...+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l-~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~----Pes~D~~~l~~~L 158 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL-SRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGF----PESYDMRALLRFL 158 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HhhCCCCceEEEeccccccCHHHHhhhhccccCCC----cccccHHHHHHHH
Confidence 356799999999999999999998866 11111123444554444332222221 1111111 1334566666666
Q ss_pred HHHhCCCc
Q 006902 255 LRRLGEKR 262 (626)
Q Consensus 255 ~~~l~~k~ 262 (626)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 66655654
No 339
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.36 E-value=0.068 Score=47.25 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEE
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVV 217 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 217 (626)
..||=|.|.+|.||||||+.+.... ...-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 3578899999999999999999988 23334556664
No 340
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.36 E-value=0.062 Score=54.94 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=65.2
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILR 256 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (626)
.....+.|.|..|.||||+++.+.+.. ......+++.- .+. .+.........+.... ...........+..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~ti-Edp--~E~~~~~~~~~i~q~e---vg~~~~~~~~~l~~ 190 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIITI-EDP--IEYVHRNKRSLINQRE---VGLDTLSFANALRA 190 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEEE-cCC--hhhhccCccceEEccc---cCCCCcCHHHHHHH
Confidence 346789999999999999999988866 33444444432 211 1111000000000000 01112234556777
Q ss_pred HhCCCcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHHh
Q 006902 257 RLGEKRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVCG 304 (626)
Q Consensus 257 ~l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va~ 304 (626)
.++..+=.+++|++.+.+.+..... ....|..|+.|....++..
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~----aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALT----AAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHH----HHHcCCcEEEEEcCCCHHH
Confidence 8888888999999987765543222 2234555777776655554
No 341
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.35 E-value=0.13 Score=56.73 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=50.3
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhC
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIG 236 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (626)
..++|.++.++.+...+.... -+-++|+.|+||||+|+.+.+... ...|...+++.-+. .+...+++.++..++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~~-~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNPE-DPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCCC-CCchHHHHHHHHhhc
Confidence 567899988888877777654 444899999999999999998762 23344444443222 244455666666554
No 342
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.35 E-value=0.29 Score=48.18 Aligned_cols=137 Identities=20% Similarity=0.292 Sum_probs=78.9
Q ss_pred CcccchHHHHHHHHHHHhc----CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccC-----HHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELR-----LEKIQ 228 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-----~~~l~ 228 (626)
..++|-.++..++-+++.. ++..-+.|+|+.|.|||+|.-.+..+..++.++| .-|....... +..|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 4678999898988888864 5677788999999999999887777653344444 4444444332 33334
Q ss_pred HHHHHHhCCCCCccCCcCHHHHHHHHHHHhCC------CcEEEEEeCCCCccc-------cccccCCCCCCCCCCcEEEE
Q 006902 229 EDIGKKIGLFDDSWKNKSFEEKAVDILRRLGE------KRFVLLLDDIWERVD-------LTEVGVPLPSPQNTTSKVVF 295 (626)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~------k~~llvlDdv~~~~~-------~~~l~~~~~~~~~~~s~iiv 295 (626)
+++..++..... ...+..+...++...|+. -+.+.|+|++.--.. +.-+-..-. ...+-+-|-+
T Consensus 101 rql~~e~~~~~k--~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs-~r~Piciig~ 177 (408)
T KOG2228|consen 101 RQLALELNRIVK--SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQS-ARAPICIIGV 177 (408)
T ss_pred HHHHHHHhhhhe--eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhh-cCCCeEEEEe
Confidence 444433332221 223444445566666642 357778877643210 111111111 2344566779
Q ss_pred ecCCh
Q 006902 296 TTRFI 300 (626)
Q Consensus 296 Ttr~~ 300 (626)
|||-.
T Consensus 178 Ttrld 182 (408)
T KOG2228|consen 178 TTRLD 182 (408)
T ss_pred ecccc
Confidence 99853
No 343
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.33 E-value=0.3 Score=46.80 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=34.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIG 236 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (626)
...++.|.|..|.||||+|.++..... +.. ..+++++... +..++.+.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 456899999999999999866554441 222 3466776333 556666666 3343
No 344
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.30 E-value=0.05 Score=49.10 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45789999999999999999999877
No 345
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.29 E-value=0.039 Score=50.66 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998865
No 346
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.29 E-value=0.032 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998766
No 347
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.28 E-value=0.12 Score=49.21 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|.|+|++|+||||+|+.+...+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998876
No 348
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.28 E-value=0.18 Score=53.44 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=52.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc---CCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW---KNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (626)
.-.++.|.|.+|+|||||+.++..... ..-..++|++.... ..++... ++.++...+.. ...+.+.+...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 457899999999999999999988762 22345788876543 3444332 45555432211 122344333333
Q ss_pred HHHhCCCcEEEEEeCCCC
Q 006902 255 LRRLGEKRFVLLLDDIWE 272 (626)
Q Consensus 255 ~~~l~~k~~llvlDdv~~ 272 (626)
. ..+.-++|+|.+..
T Consensus 153 ~---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 153 E---EEKPDLVVIDSIQT 167 (446)
T ss_pred H---hhCCCEEEEechhh
Confidence 2 23555899999853
No 349
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.28 E-value=0.058 Score=51.13 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=38.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEE-------ecCccCHHHH--HHHHHHHhCCCCC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVV-------VSKELRLEKI--QEDIGKKIGLFDD 240 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-------~s~~~~~~~l--~~~i~~~l~~~~~ 240 (626)
+...|.++||+|.||||..|.++... ..+..-..++=.+ ..-..|+.+. .++++++.++..+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 45678889999999999999999988 3333323333221 1122244433 5678887766443
No 350
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.25 E-value=0.038 Score=48.18 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=34.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCC
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFD 239 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~ 239 (626)
.+|.|.|.+|.||||+|+.+.+.. . -.| .+.-.+.++|++..+.+-
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~-g--l~~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHL-G--LKL-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHh-C--Cce-----------eeccHHHHHHHHHcCCCH
Confidence 378999999999999999999987 1 111 133467788888777643
No 351
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.25 E-value=0.2 Score=48.61 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=57.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhc--cCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----ccCCcCHH--
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLEN--QNNFDCVIWVVVSKEL-RLEKIQEDIGKKIGLFDD----SWKNKSFE-- 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~-- 248 (626)
.-.-++|+|-.|+|||+|+.++.++. .. +.+-+.++++-+.+.. +..++..++.+.-..... ....+..-
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~-~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQA-GVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhh-hccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 45678999999999999999988876 21 2235778888887764 555666666543211110 00111111
Q ss_pred ----HHHHHHHHHh---CCCcEEEEEeCCCC
Q 006902 249 ----EKAVDILRRL---GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 ----~~~~~l~~~l---~~k~~llvlDdv~~ 272 (626)
..+..+.+++ .++..|+++||+..
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1123344444 37899999999854
No 352
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.24 E-value=0.06 Score=49.63 Aligned_cols=36 Identities=33% Similarity=0.453 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEE
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVV 217 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 217 (626)
.+++.|+|+.|+|||||++.+.... ...|..++..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999977 67786555554
No 353
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.23 E-value=0.037 Score=45.88 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|-|+|.+|+|||++|+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999988877
No 354
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.33 Score=52.97 Aligned_cols=93 Identities=19% Similarity=0.244 Sum_probs=60.8
Q ss_pred CcccchHHHHHHHHHHHhc---------C---CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE---------E---SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLE 225 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 225 (626)
+++-|.++.+.+|.+-+.- . ...-|-++|++|.|||-+|++|.... ..-|++|...
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------eeeEEeecCH----
Confidence 4567889999999887753 1 24568899999999999999999877 2345555543
Q ss_pred HHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 006902 226 KIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWER 273 (626)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~ 273 (626)
+++.+- +| .+.+...+...+.=..++|.|.+|.+.+.
T Consensus 740 ELLNMY---VG--------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNMY---VG--------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHH---hc--------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222221 11 12223323333333468999999998543
No 355
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.19 E-value=0.053 Score=49.55 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|+|.+|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999987
No 356
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.19 E-value=0.64 Score=46.77 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...++.++|++|+||||++..+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999999887
No 357
>PRK06217 hypothetical protein; Validated
Probab=94.17 E-value=0.037 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|.|.+|.||||+|+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 358
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.17 E-value=0.082 Score=45.39 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=41.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhC
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLG 259 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 259 (626)
.-|.|.|-+|+||||+|.++.... .| -|+++++-..-+.+....-+...- ..-+.+.+.+.+...+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~-----~~---~~i~isd~vkEn~l~~gyDE~y~c-----~i~DEdkv~D~Le~~m~ 74 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT-----GL---EYIEISDLVKENNLYEGYDEEYKC-----HILDEDKVLDELEPLMI 74 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh-----CC---ceEehhhHHhhhcchhcccccccC-----ccccHHHHHHHHHHHHh
Confidence 457899999999999999998654 22 466666543333333222111111 22355666666666665
Q ss_pred CCcE
Q 006902 260 EKRF 263 (626)
Q Consensus 260 ~k~~ 263 (626)
+..+
T Consensus 75 ~Gg~ 78 (176)
T KOG3347|consen 75 EGGN 78 (176)
T ss_pred cCCc
Confidence 5433
No 359
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.15 E-value=0.068 Score=50.52 Aligned_cols=121 Identities=14% Similarity=0.183 Sum_probs=58.6
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc-CCcCHHHHHHHHHH-
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW-KNKSFEEKAVDILR- 256 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~- 256 (626)
.+++.|+|..|.||||+.+.+.... .. .+-...+|..-... ....++...++....-. .......-..++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~-~l-a~~G~~v~a~~~~~----~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~ 102 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIV-FL-AHIGSFVPADSATI----GLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKA 102 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHH-HH-HhCCCeeEcCCcEE----eeeeeeeeeeCCccChhhccchHHHHHHHHHHH
Confidence 4889999999999999999987543 11 11111122110000 01111222222111100 01111111222222
Q ss_pred -HhCCCcEEEEEeCCCCcccc-------ccccCCCCCCC-CCCcEEEEecCChHHHhhh
Q 006902 257 -RLGEKRFVLLLDDIWERVDL-------TEVGVPLPSPQ-NTTSKVVFTTRFIDVCGSM 306 (626)
Q Consensus 257 -~l~~k~~llvlDdv~~~~~~-------~~l~~~~~~~~-~~~s~iivTtr~~~va~~~ 306 (626)
.+..++.++++|+.....+. ..+...+. .. ..+..+|++|...+++...
T Consensus 103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~-~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLL-KRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEcChHHHHHhh
Confidence 23467889999998654321 11222222 22 2245799999988887643
No 360
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.14 E-value=0.13 Score=54.82 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=34.0
Q ss_pred CcccchHHHHHHHHHHHh---c-------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLA---E-------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.+..++.+.+... . ...+-|-++|++|.|||.+|+.+.+..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 456788777666654321 1 135668899999999999999999876
No 361
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.10 E-value=0.12 Score=43.52 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=34.8
Q ss_pred CcccchHHHHHHHHHHHhc-------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|-.-..+.+++.+.+ +..-|++..|..|+|||.+|+.+.+..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4567766666666555543 356799999999999999998888874
No 362
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.09 E-value=0.21 Score=55.83 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=58.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc---cCCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS---WKNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (626)
.-+++-|+|..|+||||||.++.... ...=..++|++....++. ..+++++.+.+. ......++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 56788899999999999998866654 223356899988887774 367777765432 1233445555555
Q ss_pred HHHhCC-CcEEEEEeCCC
Q 006902 255 LRRLGE-KRFVLLLDDIW 271 (626)
Q Consensus 255 ~~~l~~-k~~llvlDdv~ 271 (626)
...+.+ +--++|+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 555543 56689999875
No 363
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.08 E-value=0.2 Score=50.55 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=25.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 006902 182 IGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK 220 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 220 (626)
+.+.|++|.||||+++.+.+.. .....+ .+.+++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l-~~~~g~-~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL-RRERGW-AVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH-HhccCC-eEEEEcccc
Confidence 5689999999999999999887 322222 345555433
No 364
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.06 E-value=0.05 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...|.++|++|+||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 365
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.04 E-value=0.086 Score=53.35 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=39.1
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+||.++.+..+.-.+.+....-+.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4579999999998777777666667799999999999999998665
No 366
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.04 E-value=0.33 Score=54.09 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=51.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-LRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRR 257 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (626)
..|+.++|+.|+||||++..+...+ .....-..+..++.... ....+-++...+.++.+.. ...+...+...+. .
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-A 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-H
Confidence 4799999999999999998888766 22222234555554321 1244455666666665543 2234444444443 4
Q ss_pred hCCCcEEEEEeCCC
Q 006902 258 LGEKRFVLLLDDIW 271 (626)
Q Consensus 258 l~~k~~llvlDdv~ 271 (626)
+.++. ++++|=.-
T Consensus 261 ~~~~D-~VLIDTAG 273 (767)
T PRK14723 261 LGDKH-LVLIDTVG 273 (767)
T ss_pred hcCCC-EEEEeCCC
Confidence 45554 56667554
No 367
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.04 E-value=0.042 Score=48.45 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+|.|+|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999866
No 368
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.01 E-value=0.058 Score=50.58 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|.+|.|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 56789999999999999999988655
No 369
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.00 E-value=0.22 Score=45.04 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=41.0
Q ss_pred ccchHHHHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHH
Q 006902 160 IVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDI 231 (626)
Q Consensus 160 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i 231 (626)
++|.+..+.++++.+.. ....-|-|+|..|+||+.+|+.+++.. .+.-...+-|+++.- +.+.+-.++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~~~-~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS---PRKNGPFISVNCAAL-PEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETTTS--HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehhhh-hcchhhhhh
Confidence 46777777777777654 233455699999999999999999865 333334455555533 333333333
No 370
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.98 E-value=0.057 Score=53.03 Aligned_cols=89 Identities=22% Similarity=0.347 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcC
Q 006902 167 LEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKS 246 (626)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~ 246 (626)
...+++.+...+. =+-++|..|+|||++++...... . ...| ...-++.+...+...+++.+-..+..... .
T Consensus 22 ~~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~----~- 92 (272)
T PF12775_consen 22 YSYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG----R- 92 (272)
T ss_dssp HHHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT----E-
T ss_pred HHHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC----C-
Confidence 3456666665544 45899999999999999987654 1 1111 23445555554444443322221111000 0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCC
Q 006902 247 FEEKAVDILRRLGEKRFVLLLDDIW 271 (626)
Q Consensus 247 ~~~~~~~l~~~l~~k~~llvlDdv~ 271 (626)
...--.+|+.++.+||+.
T Consensus 93 -------~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 93 -------VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp -------EEEEESSSEEEEEEETTT
T ss_pred -------CCCCCCCcEEEEEecccC
Confidence 000013688899999995
No 371
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.13 Score=55.67 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=56.4
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRL 224 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 224 (626)
..+.|.+..++.+.+.+.- ...+.+-++|++|.|||.||+++.+.. ...|-.+.+ .
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~--- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S--- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H---
Confidence 3456666666665555431 245688999999999999999999965 444432221 1
Q ss_pred HHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 006902 225 EKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWER 273 (626)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~ 273 (626)
.+... +-......+........+..++.|.+|++...
T Consensus 311 -~l~sk-----------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 311 -ELLSK-----------WVGESEKNIRELFEKARKLAPSIIFIDEIDSL 347 (494)
T ss_pred -HHhcc-----------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhh
Confidence 11111 11223333344444455678899999998543
No 372
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.93 E-value=0.24 Score=43.39 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=76.8
Q ss_pred eeeeechhhHhhHHHHHhhhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHH
Q 006902 5 FQITCDGALFNRCLDCFLGKAAYIRNLQDNLVALETELGRLIAAKNDVMMRVVNAERQQMRRLDGVQVWVSRVDSVKTGA 84 (626)
Q Consensus 5 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~~~d~ 84 (626)
.+|+++.+ ++.+...+.+........+.-++.|.+.+++|.-++++++.. ....+..-+.-++++.+...++
T Consensus 7 ~gaalG~~-~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~-------~~eld~~~~ee~e~L~~~L~~g 78 (147)
T PF05659_consen 7 GGAALGAV-FGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKL-------NVELDRPRQEEIERLKELLEKG 78 (147)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH-------hhhcCCchhHHHHHHHHHHHHH
Confidence 34555544 777788887878888888888899999999999998886444 1112233367788999999999
Q ss_pred HHHHhhhhhhhccccccCccccCccccchHHHHHHHHHHHHHHHH
Q 006902 85 DELITDGSEEIGKLCVGGYCSKNCRSSYKFGKQVARKLRHVETLI 129 (626)
Q Consensus 85 ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~ 129 (626)
+++++.|..-. -+++...++.+++|+++-+.+....
T Consensus 79 ~~LV~k~sk~~---------r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 79 KELVEKCSKVR---------RWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHhcccc---------HHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 99999984311 1245556677888888777776543
No 373
>PRK15453 phosphoribulokinase; Provisional
Probab=93.93 E-value=0.38 Score=46.84 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=45.9
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC--ccCHHHHHHHHH--HHhCCCCCc--cCCcCHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK--ELRLEKIQEDIG--KKIGLFDDS--WKNKSFEEK 250 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~--~~~~~~l~~~i~--~~l~~~~~~--~~~~~~~~~ 250 (626)
....+|+|.|.+|.||||+|+.+.+.+. ..=...+.++... .++....-..+. +.-+..-+. .+..+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL 79 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDEL 79 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHH
Confidence 3567999999999999999999987661 1111234444332 224333333222 122222222 245566777
Q ss_pred HHHHHHHhCC
Q 006902 251 AVDILRRLGE 260 (626)
Q Consensus 251 ~~~l~~~l~~ 260 (626)
...++....+
T Consensus 80 ~~~l~~l~~~ 89 (290)
T PRK15453 80 EQLFREYGET 89 (290)
T ss_pred HHHHHHHhcC
Confidence 7777766553
No 374
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.92 E-value=0.38 Score=51.73 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHHHhcC--CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc----
Q 006902 169 QVWRCLAEE--SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW---- 242 (626)
Q Consensus 169 ~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---- 242 (626)
.+-+.|..+ .-.++.|.|.+|+|||||+.++.... ...=+.+++++..+ +..++.+.+ +.++.+...+
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~---~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g 324 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA---CANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQG 324 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCC
Confidence 334444443 56889999999999999999988876 23335677776554 456666653 4555432110
Q ss_pred ---------CCcCHHHHHHHHHHHhCC-CcEEEEEeCCC
Q 006902 243 ---------KNKSFEEKAVDILRRLGE-KRFVLLLDDIW 271 (626)
Q Consensus 243 ---------~~~~~~~~~~~l~~~l~~-k~~llvlDdv~ 271 (626)
.....+.....+.+.+.. +.-.+|+|.+.
T Consensus 325 ~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 325 LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 112335556666666643 44567888874
No 375
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.87 E-value=0.28 Score=45.48 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCC--------CeEEEEEecCc
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNF--------DCVIWVVVSKE 221 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--------~~~~wv~~s~~ 221 (626)
-.+..|+|.+|+||||++.++..... ....| ..++|++....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~-~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALA-TGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHH-T---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-hCCccCCcccccCceEEEEeccCC
Confidence 45888999999999999999988873 22222 35788876665
No 376
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.87 E-value=0.089 Score=53.28 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=40.8
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+||-++.+..+...+.+....-|-|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999888888777777799999999999999998876
No 377
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.078 Score=58.70 Aligned_cols=99 Identities=20% Similarity=0.371 Sum_probs=60.8
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCC-----eEEEEEecCccCHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFD-----CVIWVVVSKELRLEKIQEDIG 232 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-----~~~wv~~s~~~~~~~l~~~i~ 232 (626)
+.++||++++.++++.|....-.--.++|.+|||||++|.-+.... - ...-. ..++. -++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rI-v-~g~VP~~L~~~~i~s------------LD~g 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRI-V-NGDVPESLKDKRIYS------------LDLG 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHH-h-cCCCCHHHcCCEEEE------------ecHH
Confidence 3479999999999999987544444578999999999988877765 1 11111 11110 0111
Q ss_pred HHhCCCCCccCCcCHHHHHHHHHHHhC-CCcEEEEEeCCCCc
Q 006902 233 KKIGLFDDSWKNKSFEEKAVDILRRLG-EKRFVLLLDDIWER 273 (626)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~llvlDdv~~~ 273 (626)
.-..... -..+.+++...+.+.+. .++..|.+|.+...
T Consensus 236 ~LvAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHti 274 (786)
T COG0542 236 SLVAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTI 274 (786)
T ss_pred HHhcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 1111111 12356666666666664 45888999998753
No 378
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.82 E-value=0.061 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 379
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.81 E-value=0.24 Score=52.52 Aligned_cols=86 Identities=23% Similarity=0.365 Sum_probs=50.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc---cCCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS---WKNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (626)
.-.++.|.|.+|+|||||+.++..... ..-..++|++.... ..++... +..++...+. ....+.+.+...+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 567899999999999999999977662 22235778876543 3333322 3344432221 1223343333333
Q ss_pred HHHhCCCcEEEEEeCCCC
Q 006902 255 LRRLGEKRFVLLLDDIWE 272 (626)
Q Consensus 255 ~~~l~~k~~llvlDdv~~ 272 (626)
.+ .+.-++|+|.+..
T Consensus 167 ~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 167 EE---ENPQACVIDSIQT 181 (454)
T ss_pred Hh---cCCcEEEEecchh
Confidence 22 3556799998854
No 380
>PF13245 AAA_19: Part of AAA domain
Probab=93.80 E-value=0.24 Score=37.98 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=18.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.+++.|.|.+|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678889999999995444444433
No 381
>PRK13949 shikimate kinase; Provisional
Probab=93.78 E-value=0.051 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.418 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
-|.|+|+.|.||||+++.+....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999876
No 382
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.77 E-value=0.096 Score=46.65 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|++|+|..|+|||||+..+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
No 383
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.76 E-value=0.046 Score=49.66 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.|-+.|.+|+||||+|+.+....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 356778999999999999999877
No 384
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.75 E-value=0.19 Score=52.50 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=48.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHh-----CCCCCccCCcCHH----
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKI-----GLFDDSWKNKSFE---- 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l-----~~~~~~~~~~~~~---- 248 (626)
.-..++|+|..|+|||||++.+.... .....+++..--...++..+....+... ..-.. .+....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~q--sd~~~~~r~~ 237 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVAT--SDESPMMRRL 237 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEc--CCCCHHHHHH
Confidence 45679999999999999998887643 2222344443323334444444333322 11000 111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCC
Q 006902 249 --EKAVDILRRL--GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 --~~~~~l~~~l--~~k~~llvlDdv~~ 272 (626)
..+..+.+++ +++..|+++||+..
T Consensus 238 ~~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 238 APLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1122233443 58999999999854
No 385
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.74 E-value=0.25 Score=51.97 Aligned_cols=93 Identities=19% Similarity=0.302 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----ccCCcCHH----
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL-RLEKIQEDIGKKIGLFDD----SWKNKSFE---- 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~---- 248 (626)
.-.-++|+|..|+|||||+.++.... . +.+-+.++++-+.+.. ...++..++...-..... ...+.+.-
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 45678999999999999999988877 2 2366788887776553 445555555543211110 00111111
Q ss_pred --HHHHHHHHHh---CCCcEEEEEeCCCC
Q 006902 249 --EKAVDILRRL---GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 --~~~~~l~~~l---~~k~~llvlDdv~~ 272 (626)
..+..+.+++ +++..|+++||+..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1233345555 48999999999954
No 386
>PRK13947 shikimate kinase; Provisional
Probab=93.73 E-value=0.055 Score=49.20 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 387
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.72 E-value=0.05 Score=48.16 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRIN 200 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~ 200 (626)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 388
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.72 E-value=0.11 Score=46.47 Aligned_cols=114 Identities=23% Similarity=0.243 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc--CHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL--RLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDIL 255 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (626)
+-.+++|+|..|.|||||++.+.... ......+++...... .... ....+..-. +-..-+...-.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~---qlS~G~~~r~~l~ 92 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEE----LRRRIGYVP---QLSGGQRQRVALA 92 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHH----HHhceEEEe---eCCHHHHHHHHHH
Confidence 44789999999999999999998865 234455555422111 1111 111122110 0111122333355
Q ss_pred HHhCCCcEEEEEeCCCCccc---cccc---cCCCCCCCCCCcEEEEecCChHHHhh
Q 006902 256 RRLGEKRFVLLLDDIWERVD---LTEV---GVPLPSPQNTTSKVVFTTRFIDVCGS 305 (626)
Q Consensus 256 ~~l~~k~~llvlDdv~~~~~---~~~l---~~~~~~~~~~~s~iivTtr~~~va~~ 305 (626)
..+...+-++++|+....-+ ...+ ...+. . .+..++++|.+.+....
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~-~--~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELA-E--EGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-H--CCCEEEEEeCCHHHHHH
Confidence 56666677889998865422 1222 22222 1 24678888887666544
No 389
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.71 E-value=0.05 Score=49.97 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+++.|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998754
No 390
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.69 E-value=0.18 Score=57.36 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=36.5
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.+..++.+.+.+.- ...+-+.++|++|.|||++|+.+.+..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 4578888888888776641 134558899999999999999999976
No 391
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.65 E-value=0.051 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36789999999999999987754
No 392
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.64 E-value=0.052 Score=47.30 Aligned_cols=23 Identities=52% Similarity=0.807 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+.|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998764
No 393
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.64 E-value=0.14 Score=51.34 Aligned_cols=49 Identities=27% Similarity=0.305 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQED 230 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~ 230 (626)
.+++.+.|.|||||||+|.+..-.. ......+.-|+.....++.++...
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l---A~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL---AESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH---HHcCCcEEEEEeCCCCchHhhhcc
Confidence 4788999999999999999865554 222244677766666555555443
No 394
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.63 E-value=0.061 Score=45.38 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998766
No 395
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.61 E-value=0.085 Score=49.71 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=27.6
Q ss_pred HHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 172 RCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 172 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.+...++++|+++|..|+|||||...+....
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555689999999999999999999998875
No 396
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.57 E-value=0.058 Score=50.73 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|+|+|+.|+||||||+.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998865
No 397
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.57 E-value=0.4 Score=46.31 Aligned_cols=79 Identities=15% Similarity=0.080 Sum_probs=44.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc--cCHHHHHHHHHHHh--CCCCCc--cCCcCHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE--LRLEKIQEDIGKKI--GLFDDS--WKNKSFEEKAVDI 254 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~l~~~i~~~l--~~~~~~--~~~~~~~~~~~~l 254 (626)
+|+|.|.+|.||||+|+.+.... +... ..+..++...- ++-...-..+.... +..-+. .+..+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999999877 2111 12444443322 22222222222221 122222 2455667777777
Q ss_pred HHHhCCCc
Q 006902 255 LRRLGEKR 262 (626)
Q Consensus 255 ~~~l~~k~ 262 (626)
....+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 77766653
No 398
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.55 E-value=0.44 Score=50.21 Aligned_cols=95 Identities=14% Similarity=0.113 Sum_probs=54.2
Q ss_pred CCeEEEEEcCCCchHHHHH-HHHHHHHhhcc-----CCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc-----cCCcC
Q 006902 178 SAGIIGLYGMGGVGKTTLL-TRINNKFLENQ-----NNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS-----WKNKS 246 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~-----~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-----~~~~~ 246 (626)
+-.-++|.|-.|+|||+|| -.+.|.. .+. ++-+.++++-+.+....-.-+.+.++.-+.-... ..+++
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 4566889999999999997 6667765 221 3446788888887654333233333333311110 01111
Q ss_pred HHH------HHHHHHHHh--CCCcEEEEEeCCCCc
Q 006902 247 FEE------KAVDILRRL--GEKRFVLLLDDIWER 273 (626)
Q Consensus 247 ~~~------~~~~l~~~l--~~k~~llvlDdv~~~ 273 (626)
... .+..+.+++ +++..|+|+||+...
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 110 122233333 589999999999653
No 399
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.55 E-value=0.35 Score=45.82 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998766
No 400
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.55 E-value=0.11 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|.|.+|+||||+|+.+....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999988
No 401
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.54 E-value=0.077 Score=49.59 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....+|.|+|++|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999876
No 402
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.53 E-value=0.11 Score=47.05 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|.|.|..|+|||||++.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6789999999999999999988
No 403
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.53 E-value=0.15 Score=54.32 Aligned_cols=90 Identities=26% Similarity=0.285 Sum_probs=50.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEE-EecCccCHHHHHHHHHHHhCCCC--CccCCcC-----HHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWV-VVSKELRLEKIQEDIGKKIGLFD--DSWKNKS-----FEE 249 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv-~~s~~~~~~~l~~~i~~~l~~~~--~~~~~~~-----~~~ 249 (626)
.-.-..|+|..|+|||||++.|.+... ..+-++.++| -+.+.+... .++...+.... ..++... ...
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~ 489 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAE 489 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHH
Confidence 445678999999999999999999762 2344554443 355443221 22222231100 0011111 112
Q ss_pred HHHHHHHHh--CCCcEEEEEeCCCC
Q 006902 250 KAVDILRRL--GEKRFVLLLDDIWE 272 (626)
Q Consensus 250 ~~~~l~~~l--~~k~~llvlDdv~~ 272 (626)
++-.+.+++ .++..||++|++..
T Consensus 490 ~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 490 LAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCchH
Confidence 233344555 68999999999854
No 404
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.52 E-value=0.82 Score=46.69 Aligned_cols=101 Identities=22% Similarity=0.213 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcC----CCeEEEEEcCCCchHH-HHHHHHHHHHhhccCCCCeEEEEEecCc-cCHHHHHHHHHHHhCC
Q 006902 164 QSQLEQVWRCLAEE----SAGIIGLYGMGGVGKT-TLLTRINNKFLENQNNFDCVIWVVVSKE-LRLEKIQEDIGKKIGL 237 (626)
Q Consensus 164 ~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~l~~~i~~~l~~ 237 (626)
.+....+..++.++ +.+|+.+||+.||||| |||+... .+ .....=..+..|+...- ....+=++.-+.-++.
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAa-r~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~v 261 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAA-RY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGV 261 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHH-HH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCC
Confidence 33444555555554 4899999999999997 5555444 33 21233345666665432 2333334444455555
Q ss_pred CCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCC
Q 006902 238 FDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDI 270 (626)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv 270 (626)
+.. -..+..+....+. .+++... +.+|-+
T Consensus 262 p~~--vv~~~~el~~ai~-~l~~~d~-ILVDTa 290 (407)
T COG1419 262 PLE--VVYSPKELAEAIE-ALRDCDV-ILVDTA 290 (407)
T ss_pred ceE--EecCHHHHHHHHH-HhhcCCE-EEEeCC
Confidence 543 2234444443333 3344433 333544
No 405
>PRK14530 adenylate kinase; Provisional
Probab=93.52 E-value=0.066 Score=50.80 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..|.|+|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998766
No 406
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.50 E-value=0.067 Score=43.88 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRIN 200 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~ 200 (626)
.-..++|+|..|.|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999875
No 407
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.48 E-value=0.059 Score=49.82 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 408
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.46 E-value=0.13 Score=51.46 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=41.7
Q ss_pred CcccchHHHHHHHHHHHhc------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|+++.++++++.+.. .+-+|+-++|+.|.||||||..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999975 367899999999999999999998887
No 409
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.46 E-value=0.09 Score=49.56 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=37.4
Q ss_pred CcccchHHHHHH---HHHHHhcC------CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQ---VWRCLAEE------SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++++|.++.+.+ |+++|.+. ..+-|..+|++|.|||.+|+++.|..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 567898877654 56677652 46789999999999999999999977
No 410
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.45 E-value=0.068 Score=47.55 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|.++|++|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998766
No 411
>PRK13695 putative NTPase; Provisional
Probab=93.45 E-value=0.11 Score=47.36 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=26.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEE
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVV 217 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 217 (626)
-+.|+|.+|+|||||++.+++.. .. ..+....|+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l-~~-~G~~~~g~~~ 36 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL-KE-EGYKVGGFYT 36 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HH-CCCeEEEEEc
Confidence 47899999999999999999877 32 3454444543
No 412
>PRK13975 thymidylate kinase; Provisional
Probab=93.45 E-value=0.073 Score=49.66 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=22.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999987
No 413
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.42 E-value=0.21 Score=47.67 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=38.9
Q ss_pred HHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHH
Q 006902 166 QLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQE 229 (626)
Q Consensus 166 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~ 229 (626)
...++++.+.. .+..+|+|.|.+|+||+||.-.+...+ ..+.+--.++=|+.|..++--.++.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCcccc
Confidence 34455555554 478899999999999999999999988 4333434466666666665444443
No 414
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.40 E-value=0.067 Score=46.96 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCC
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLF 238 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 238 (626)
.+++.|+|.+|+||||+.+.+-... +..+ ..+.-.+.-+++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l--~~~~-----------ivNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL--VKHK-----------IVNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH--hhce-----------eeeHhHHHHHHHHHhCCc
Confidence 4789999999999999998776543 1111 114456666677666653
No 415
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.38 E-value=0.2 Score=46.68 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|.|.|+.|+||||+++.+.+..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999987
No 416
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.14 Score=47.85 Aligned_cols=46 Identities=28% Similarity=0.389 Sum_probs=37.4
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++-|.|-.++++.+...- +..+-|.++|++|.|||.||++|.|+.
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 3456788888888777642 467778999999999999999999976
No 417
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.28 E-value=0.3 Score=47.91 Aligned_cols=57 Identities=25% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHH
Q 006902 164 QSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQ 228 (626)
Q Consensus 164 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~ 228 (626)
..-++++..++..+ .-+-+.|.+|+|||++|+.+.... .. ..+.++++...+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 34455555665543 345689999999999999998744 22 23455555555555544
No 418
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.20 E-value=0.12 Score=56.03 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=39.0
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+...+......-+-|+|..|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999888776655667899999999999999998764
No 419
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.18 E-value=0.082 Score=48.85 Aligned_cols=107 Identities=16% Similarity=0.061 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCc
Q 006902 166 QLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNK 245 (626)
Q Consensus 166 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~ 245 (626)
+...+++.... ....+.|+|..|.||||+++.+.... ...- ..+-+.-....... ..... ++..........
T Consensus 13 ~~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i---~~~~-~~i~ied~~E~~~~--~~~~~-~~~~~~~~~~~~ 84 (186)
T cd01130 13 LQAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFI---PPDE-RIITIEDTAELQLP--HPNWV-RLVTRPGNVEGS 84 (186)
T ss_pred HHHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhc---CCCC-CEEEECCccccCCC--CCCEE-EEEEecCCCCCC
Confidence 34444444444 35689999999999999999988765 2221 22222100000000 00000 000000000011
Q ss_pred CHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccc
Q 006902 246 SFEEKAVDILRRLGEKRFVLLLDDIWERVDLTEVG 280 (626)
Q Consensus 246 ~~~~~~~~l~~~l~~k~~llvlDdv~~~~~~~~l~ 280 (626)
......+.+...++..+=.++++.+.+.+.+..+.
T Consensus 85 ~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 85 GEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred CccCHHHHHHHHhccCCCEEEEEccCcHHHHHHHH
Confidence 12234455666777777788899998877665443
No 420
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.16 E-value=0.36 Score=50.37 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=52.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----ccCCcCHH----
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL-RLEKIQEDIGKKIGLFDD----SWKNKSFE---- 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~---- 248 (626)
.-..++|+|..|+|||||++++.+.. ..+.+++.-+.+.. ...++..+.+..-+.... ...+.+..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 56788999999999999999998765 22455556555543 333444444332221110 00111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCC
Q 006902 249 --EKAVDILRRL--GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 --~~~~~l~~~l--~~k~~llvlDdv~~ 272 (626)
..+..+.+++ +++..|+++||+..
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1122344444 58999999999954
No 421
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.14 E-value=0.092 Score=48.80 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998865
No 422
>PRK06851 hypothetical protein; Provisional
Probab=93.14 E-value=1.3 Score=45.20 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=33.9
Q ss_pred cCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 006902 176 EESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE 221 (626)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 221 (626)
.+-.+++.|.|.+|+|||||++.++.... .+.++..++-|.+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 44568899999999999999999999883 566666555554443
No 423
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.14 E-value=0.78 Score=45.22 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=37.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKK 234 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~ 234 (626)
.-.++.|.|.+|+||||++.++..... ..+=..++|++... ...++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 456888999999999999999877651 22234688887665 445666666554
No 424
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.11 E-value=0.091 Score=47.81 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...|.|+|+.|.||||+|+.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3468999999999999999998865
No 425
>PRK08149 ATP synthase SpaL; Validated
Probab=93.07 E-value=0.43 Score=49.67 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=51.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCc----cCCcCH-----
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-LRLEKIQEDIGKKIGLFDDS----WKNKSF----- 247 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~----~~~~~~----- 247 (626)
+-..++|+|..|+|||||+..+.+.. .-+.++...+... .+...+..+.........-. ..+.+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 56788999999999999999998754 2233333434332 34555655555532211100 011111
Q ss_pred -HHHHHHHHHHh--CCCcEEEEEeCCCC
Q 006902 248 -EEKAVDILRRL--GEKRFVLLLDDIWE 272 (626)
Q Consensus 248 -~~~~~~l~~~l--~~k~~llvlDdv~~ 272 (626)
...+..+.+++ ++|..|+++||+..
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 11223334444 58999999999954
No 426
>PRK14527 adenylate kinase; Provisional
Probab=93.07 E-value=0.092 Score=48.76 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|+|.+|.||||+|+.+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 427
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.06 E-value=0.22 Score=45.95 Aligned_cols=44 Identities=25% Similarity=0.226 Sum_probs=30.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQED 230 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~ 230 (626)
+.|.|.+|+|||++|.++..... ..=..++|++... +.+++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 57899999999999999877652 2224577887654 45555444
No 428
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.06 E-value=0.12 Score=51.19 Aligned_cols=39 Identities=28% Similarity=0.412 Sum_probs=28.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE 221 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 221 (626)
+.|+|+|-||+||||++..+..... +..+ .++-++....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La--~~G~-~VlliD~D~q 39 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALA--EMGK-KVMIVGCDPK 39 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHH--HCCC-eEEEEeCCCC
Confidence 4689999999999999999888773 2333 3555555443
No 429
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.04 E-value=0.17 Score=52.54 Aligned_cols=90 Identities=22% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----ccCCcCHH----
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL-RLEKIQEDIGKKIGLFDD----SWKNKSFE---- 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~---- 248 (626)
.-..++|+|..|+|||||++.+.+.. ..+.++..-+.+.. ...++..+++..-+.... ...+....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 55779999999999999999998643 22566666665543 334455554433211110 00111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCC
Q 006902 249 --EKAVDILRRL--GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 --~~~~~l~~~l--~~k~~llvlDdv~~ 272 (626)
..+..+.+++ +++..|+++||+..
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1122244444 58999999999954
No 430
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.02 E-value=0.099 Score=46.46 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|++|+|..|+|||||...+....
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 3689999999999999999999988
No 431
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.01 E-value=0.32 Score=45.81 Aligned_cols=87 Identities=23% Similarity=0.348 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCC----ccCCcCHH----
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-LRLEKIQEDIGKKIGLFDD----SWKNKSFE---- 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~----~~~~~~~~---- 248 (626)
.-.-++|+|..|+|||+|+..+.+.. .-+..+++-+.+. ....++.+++...-..+.. ....+...
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 44678999999999999999999876 2344577777655 4556666666432111000 00111111
Q ss_pred ------HHHHHHHHHhCCCcEEEEEeCCC
Q 006902 249 ------EKAVDILRRLGEKRFVLLLDDIW 271 (626)
Q Consensus 249 ------~~~~~l~~~l~~k~~llvlDdv~ 271 (626)
..++.++. +++..|+++||+.
T Consensus 89 ~~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 89 APYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hhccchhhhHHHhh--cCCceeehhhhhH
Confidence 11222333 7999999999984
No 432
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.98 E-value=0.13 Score=45.72 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 166 QLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 166 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++++.++|.+ +++.++|..|+|||||...+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 36667777765 899999999999999999888754
No 433
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.96 E-value=0.16 Score=50.92 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=30.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQ 228 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~ 228 (626)
+++.+.|-||+||||+|.+..-... -+. ..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A-~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALA-RRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH-HTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHh-hCC--CCeeEeecCCCccHHHHh
Confidence 5788999999999999988776662 122 235555555544444443
No 434
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.95 E-value=0.43 Score=50.10 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----ccCCcCHH----
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL-RLEKIQEDIGKKIGLFDD----SWKNKSFE---- 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~---- 248 (626)
.-.-++|+|..|+|||||+.++.... .. .+=+.++++-+.+.. ...++..++...-..... ....++..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~-~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNI-AK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-Hh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45678999999999999999987776 22 222467777676543 455666666543211100 00111111
Q ss_pred --HHHHHHHHHh---CCCcEEEEEeCCCC
Q 006902 249 --EKAVDILRRL---GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 --~~~~~l~~~l---~~k~~llvlDdv~~ 272 (626)
..+..+.+++ +++..|+++||+..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1233355555 67999999999954
No 435
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=92.95 E-value=0.3 Score=50.39 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 166 QLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 166 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+.+++.+.......+-|.|.||.|||++.+.+.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 35566666666777888999999999999999999988
No 436
>PF14516 AAA_35: AAA-like domain
Probab=92.95 E-value=1.9 Score=43.78 Aligned_cols=112 Identities=17% Similarity=0.254 Sum_probs=70.0
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-----cCHHHHHHHH-
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-----LRLEKIQEDI- 231 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-----~~~~~l~~~i- 231 (626)
+..|.|...-+++.+.|.+. -..+.|.|+-.+|||+|...+.+... . ..+ .++++++... .+.+..++.+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~-~-~~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQ-Q-QGY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHH-H-CCC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 55678886667777777652 45889999999999999999998882 2 333 4667876542 2455555444
Q ss_pred ---HHHhCCCCCc---cC--CcCHHHHHHHHHHHh---CCCcEEEEEeCCCCc
Q 006902 232 ---GKKIGLFDDS---WK--NKSFEEKAVDILRRL---GEKRFVLLLDDIWER 273 (626)
Q Consensus 232 ---~~~l~~~~~~---~~--~~~~~~~~~~l~~~l---~~k~~llvlDdv~~~ 273 (626)
.++++.+..- |. ..........+.+.+ .+++.+|++|++...
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 4555543310 10 112223333344432 268999999999654
No 437
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=92.94 E-value=0.41 Score=49.21 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHH-HHHHHHHhhccCCCCeEEEEEecCc---cCHHHHHHHHHHHhCC
Q 006902 163 LQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLL-TRINNKFLENQNNFDCVIWVVVSKE---LRLEKIQEDIGKKIGL 237 (626)
Q Consensus 163 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~~s~~---~~~~~l~~~i~~~l~~ 237 (626)
|.+..++|..||.+..-..|.|.|+-|.||+.|+ .++..+. +.+..+++.+- .+-..++..++.++|.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5677899999999998999999999999999999 6665543 23677775543 3455666666666654
No 438
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=0.38 Score=51.06 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=47.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRR 257 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (626)
...-|-+||++|.|||-||++|.|.. +-+| ++|... +++... -.++.....+...+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hhhHHHHHHHHHHHh
Confidence 35567899999999999999999987 4554 444332 222221 122333334444445
Q ss_pred hCCCcEEEEEeCCCC
Q 006902 258 LGEKRFVLLLDDIWE 272 (626)
Q Consensus 258 l~~k~~llvlDdv~~ 272 (626)
=.+-+|.|.+|.+..
T Consensus 601 R~saPCVIFFDEiDa 615 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDA 615 (802)
T ss_pred hcCCCeEEEecchhh
Confidence 457899999999853
No 439
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.86 E-value=0.64 Score=42.00 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=45.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCH-HHHHHHHHHHhCC
Q 006902 182 IGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSF-EEKAVDILRRLGE 260 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~ 260 (626)
+-|.|..|+|||++|.++... ....++++.-.+.++.+ ..+.|..........|...+. ..+...+. ...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~-~~~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALK-ELD- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHH-hcC-
Confidence 578999999999999988653 22367777777776653 444444433222222322222 22333332 112
Q ss_pred CcEEEEEeCC
Q 006902 261 KRFVLLLDDI 270 (626)
Q Consensus 261 k~~llvlDdv 270 (626)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2336888876
No 440
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.86 E-value=0.074 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|.|+|+.|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998765
No 441
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.80 E-value=0.32 Score=46.54 Aligned_cols=53 Identities=30% Similarity=0.358 Sum_probs=29.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhh----ccCCCCeEEEEEecCccCHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKFLE----NQNNFDCVIWVVVSKELRLEKIQEDIGK 233 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~----~~~~F~~~~wv~~s~~~~~~~l~~~i~~ 233 (626)
+..|+|++|.||||++..+.....+ ....-+..+-++......++.++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7889999999999766666655411 0133344455555555455555555544
No 442
>PRK06620 hypothetical protein; Validated
Probab=92.79 E-value=0.086 Score=49.83 Aligned_cols=46 Identities=17% Similarity=0.041 Sum_probs=30.8
Q ss_pred Ccccch-H-HHHHHHHHHHhc-C-C--CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGL-Q-SQLEQVWRCLAE-E-S--AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr-~-~~~~~l~~~L~~-~-~--~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+||- . .....+.++-.. + + ...+-|+|+.|+|||+|++.+.+..
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc
Confidence 556776 2 234444444432 1 1 2668999999999999999887755
No 443
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.75 E-value=0.21 Score=51.96 Aligned_cols=91 Identities=24% Similarity=0.259 Sum_probs=49.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc----cCCcCH-H----
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS----WKNKSF-E---- 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~----~~~~~~-~---- 248 (626)
.-..++|+|..|+|||||++.+.... .....++...--+.....++..+.+..-+....- ..+... .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 45789999999999999999888754 1222232222222334455555444332211100 011111 1
Q ss_pred -HHHHHHHHHh--CCCcEEEEEeCCCC
Q 006902 249 -EKAVDILRRL--GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 -~~~~~l~~~l--~~k~~llvlDdv~~ 272 (626)
..+..+.+++ +++..|+++||+..
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223344444 58899999999854
No 444
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.75 E-value=0.16 Score=52.92 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=36.4
Q ss_pred CCcccchHHHHHHHHHHHhcC----------------CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAEE----------------SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~~----------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+..++|.++.++.+...+... ...-+.++|+.|+|||++|+.+....
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 456899999988886555210 13568899999999999999998765
No 445
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.74 E-value=0.22 Score=46.38 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 168 EQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 168 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+.+..+.....++..|.|.+|.||||+++.+....
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 344455545566788999999999999999998877
No 446
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.73 E-value=0.18 Score=50.96 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=36.5
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.++.++.+.-.+.+.+..=+-+.|..|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4578999999988766654444458899999999999999987654
No 447
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.73 E-value=0.1 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++|+|.|-||+||||++..+....
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 478999999999999998888777
No 448
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.72 E-value=0.15 Score=48.92 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=18.4
Q ss_pred EEcCCCchHHHHHHHHHHHH
Q 006902 184 LYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 184 I~G~gGiGKTtLa~~v~~~~ 203 (626)
|+|++|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988
No 449
>PRK13946 shikimate kinase; Provisional
Probab=92.72 E-value=0.096 Score=48.29 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+.|.++|+.|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999876
No 450
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.65 E-value=0.17 Score=49.58 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=27.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVV 218 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 218 (626)
++|+|+|.+|+|||||+..+.... . +.. .++-+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L-~--~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL-S--GRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-H--hCC-CEEEEEE
Confidence 579999999999999999999988 3 332 3555544
No 451
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.65 E-value=0.51 Score=43.41 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....++.|.|.+|.||||+|+.+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999876
No 452
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=10 Score=37.02 Aligned_cols=90 Identities=20% Similarity=0.271 Sum_probs=58.0
Q ss_pred CcccchHHHHHHHHHHHhc---------C---CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE---------E---SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLE 225 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 225 (626)
.++-|.+..++.+.+...- + ..+-|.++|++|.||+-||++|.... .. -|++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehH----
Confidence 3467888888888777541 1 35778899999999999999999877 22 33445543
Q ss_pred HHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHh-CCCcEEEEEeCCC
Q 006902 226 KIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRL-GEKRFVLLLDDIW 271 (626)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~llvlDdv~ 271 (626)
++...++ + +.+.+...+.+.- .+|+.+|.+|.+.
T Consensus 201 DLvSKWm---G---------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 DLVSKWM---G---------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred HHHHHHh---c---------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 2222221 1 2233444444433 4688899999884
No 453
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.65 E-value=0.11 Score=46.79 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++.|.|++|+||+||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578899999999999999998854
No 454
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.64 E-value=0.39 Score=48.90 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=48.7
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIG 232 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~ 232 (626)
..++|.++.+..+...+..+. -+-+.|.+|+|||+||+.+.... .. ...++.+.......++.....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l---~~---~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL---GL---PFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh---CC---CeEEEecCCCCCHHHhcCchh
Confidence 447898888888777776543 36789999999999999999877 22 346666666666666655443
No 455
>PRK04182 cytidylate kinase; Provisional
Probab=92.63 E-value=0.1 Score=47.86 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999998866
No 456
>PRK13236 nitrogenase reductase; Reviewed
Probab=92.63 E-value=0.098 Score=52.30 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=24.5
Q ss_pred cCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 176 EESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+++.+|+++.|-|||||||+|..+....
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHH
Confidence 4567999999999999999998887776
No 457
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.59 E-value=0.054 Score=50.02 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
|+.|.|..|.||||+.+.+.-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999843
No 458
>PRK13948 shikimate kinase; Provisional
Probab=92.56 E-value=0.12 Score=47.32 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+.|.++||.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45788999999999999999998866
No 459
>PRK13768 GTPase; Provisional
Probab=92.55 E-value=0.2 Score=48.79 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.|.||+||||++..+....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 578899999999999999988877
No 460
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.55 E-value=0.11 Score=47.77 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998754
No 461
>PRK06761 hypothetical protein; Provisional
Probab=92.54 E-value=0.14 Score=50.11 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=22.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++|.|.|.+|+||||+|+.+.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999987
No 462
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.52 E-value=0.079 Score=49.62 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=60.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc-CCcCHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW-KNKSFEEKAVDILR 256 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 256 (626)
...++.|.|..|.||||+.+.+..... . .+. -+++++.. ..+ .+...|...++..+... .......-...+..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~-l-a~~--G~~vpa~~-~~l-~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~ 101 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAI-M-AQI--GCFVPAEY-ATL-PIFNRLLSRLSNDDSMERNLSTFASEMSETAY 101 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-H-HHc--CCCcchhh-cCc-cChhheeEecCCccccchhhhHHHHHHHHHHH
Confidence 347899999999999999998875441 1 111 11222111 111 22333333333321100 00011111111222
Q ss_pred H--hCCCcEEEEEeCCCCcc---c----cccccCCCCCCCCCCcEEEEecCChHHHhhh
Q 006902 257 R--LGEKRFVLLLDDIWERV---D----LTEVGVPLPSPQNTTSKVVFTTRFIDVCGSM 306 (626)
Q Consensus 257 ~--l~~k~~llvlDdv~~~~---~----~~~l~~~~~~~~~~~s~iivTtr~~~va~~~ 306 (626)
. +..++-|+++|+..... + ...+...+. ..++.+|++|...+++..+
T Consensus 102 il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~---~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 102 ILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI---KKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH---hcCCEEEEECChHHHHHHh
Confidence 2 23567899999974431 1 112222222 2378999999998888744
No 463
>PLN02200 adenylate kinase family protein
Probab=92.51 E-value=0.13 Score=49.42 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|.|++|+||||+|+.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999998765
No 464
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.50 E-value=0.092 Score=45.65 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||.+.+....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34689999999999999999988766
No 465
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.50 E-value=0.13 Score=45.85 Aligned_cols=24 Identities=42% Similarity=0.722 Sum_probs=22.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++++|+|..|+|||||+..+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999887
No 466
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.47 E-value=0.11 Score=46.75 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=17.1
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~ 202 (626)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999998864
No 467
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.47 E-value=0.37 Score=45.18 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....|+|+|.+|+|||||...+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 45789999999999999999988764
No 468
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.46 E-value=0.11 Score=48.83 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
..+.+.|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678999999999999999998753
No 469
>PLN02796 D-glycerate 3-kinase
Probab=92.46 E-value=0.31 Score=49.03 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..-+|+|.|..|.|||||++.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 45689999999999999999999877
No 470
>PRK05922 type III secretion system ATPase; Validated
Probab=92.42 E-value=0.3 Score=50.86 Aligned_cols=91 Identities=14% Similarity=0.226 Sum_probs=49.8
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCc----cCCcCH-H--
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-LRLEKIQEDIGKKIGLFDDS----WKNKSF-E-- 248 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~----~~~~~~-~-- 248 (626)
..-..++|+|..|+|||||++.+.+.. ..+...+.-+... ......+.+..........- ..+.+. .
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 355678999999999999999998754 2233333333332 23334444443332221100 011111 1
Q ss_pred ---HHHHHHHHHh--CCCcEEEEEeCCCC
Q 006902 249 ---EKAVDILRRL--GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 ---~~~~~l~~~l--~~k~~llvlDdv~~ 272 (626)
..+..+.+++ +++..|+++||+..
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1123344444 58999999999954
No 471
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.19 Score=50.24 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=33.1
Q ss_pred cccchHHHHHHHHHHHhc------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 159 TIVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++.|..+.++-|.+...- ..-+-|..+|++|.|||-||++|+...
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 345666666555555431 145678899999999999999999987
No 472
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.38 E-value=0.25 Score=53.09 Aligned_cols=53 Identities=26% Similarity=0.439 Sum_probs=41.4
Q ss_pred ccchHHHHHHHHHHHhcC-----CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEE
Q 006902 160 IVGLQSQLEQVWRCLAEE-----SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVV 217 (626)
Q Consensus 160 ~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 217 (626)
++-=.+-++++.+||.+. ..+++.+.|++|+||||.++.+.+.. .|+.+=|..
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 333355678888888752 35789999999999999999999876 577777875
No 473
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.38 E-value=0.11 Score=49.12 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-..|+|+|++|+|||||.+.+..-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999988655
No 474
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.37 E-value=0.42 Score=49.98 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=57.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----ccCCcCHH----
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL-RLEKIQEDIGKKIGLFDD----SWKNKSFE---- 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~---- 248 (626)
.-.-++|.|..|+|||+|+.++.... . +.+-+.++++-+.+.. ...++..++...-..... ....++.-
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 45678999999999999999988776 2 2344788888776654 445555555543111100 00111111
Q ss_pred --HHHHHHHHHh---CCCcEEEEEeCCCC
Q 006902 249 --EKAVDILRRL---GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 --~~~~~l~~~l---~~k~~llvlDdv~~ 272 (626)
..+..+.+++ +++..|+++||+..
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1233345554 46899999999954
No 475
>PLN02165 adenylate isopentenyltransferase
Probab=92.37 E-value=0.2 Score=50.12 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=25.1
Q ss_pred hcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 175 AEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 175 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
......++.|+|+.|+||||||..+....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 45566799999999999999999988775
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.37 E-value=0.12 Score=47.23 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|+|..|.||||+++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999876
No 477
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.36 E-value=0.31 Score=47.32 Aligned_cols=62 Identities=26% Similarity=0.379 Sum_probs=44.3
Q ss_pred HHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHH
Q 006902 168 EQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQED 230 (626)
Q Consensus 168 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~ 230 (626)
.+++..+.. ++..||+|.|.+|+||+||.-.+-..+ .-+.+--.++=|+.|..++--.++.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccccc
Confidence 344555543 578899999999999999999998888 44455445666777777665555544
No 478
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.35 E-value=0.12 Score=41.46 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++.+.|.+|+||||++..+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999988
No 479
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.35 E-value=0.2 Score=44.18 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++++.|.+|+||||++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998876
No 480
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.34 E-value=0.54 Score=47.21 Aligned_cols=90 Identities=22% Similarity=0.248 Sum_probs=50.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCc----cCCcCHH----
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK-ELRLEKIQEDIGKKIGLFDDS----WKNKSFE---- 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~----~~~~~~~---- 248 (626)
.-..++|+|..|.|||||++.+.+.. . -+..+..-+.. ..+...+.......-...... ..++...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 45678999999999999999988755 1 23333333332 335555555554432211100 0111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCC
Q 006902 249 --EKAVDILRRL--GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 --~~~~~l~~~l--~~k~~llvlDdv~~ 272 (626)
..+..+.+++ ++|..|+++||+..
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1122233333 58999999999854
No 481
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=0.038 Score=50.11 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=37.3
Q ss_pred ccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccc
Q 006902 361 LRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSI 440 (626)
Q Consensus 361 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 440 (626)
++.++.+++.+.. ..+..|.+++.++.|.+..+....--.+....+..++|+.|+|++|...++.
T Consensus 103 IeaVDAsds~I~~---------------eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 103 IEAVDASDSSIMY---------------EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred EEEEecCCchHHH---------------HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 5666666665432 3445555666665555544432221222222223444555555544433332
Q ss_pred cccccccccccccceeecc
Q 006902 441 VDATAFADLNHLNELWIYR 459 (626)
Q Consensus 441 ~~~~~l~~~~~L~~L~l~~ 459 (626)
.+..|..+++|+.|.|.+
T Consensus 168 -GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 168 -GLACLLKLKNLRRLHLYD 185 (221)
T ss_pred -HHHHHHHhhhhHHHHhcC
Confidence 223344444444444443
No 482
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.34 E-value=0.25 Score=50.49 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=40.9
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|-++..+.+...+..++. ..+-|+|..|+||||+|+.+....
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988764 468899999999999999998877
No 483
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=92.29 E-value=0.21 Score=50.22 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....|.++|+.|.||||+++.+....
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998765
No 484
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.29 E-value=0.29 Score=55.47 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-..++|+|..|.|||||++.+..-+
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999997665
No 485
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.28 E-value=0.12 Score=51.17 Aligned_cols=24 Identities=33% Similarity=0.643 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++|+|+|-||+||||+|..+....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999988877
No 486
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.28 E-value=0.38 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=22.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..|.|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 487
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.26 E-value=0.11 Score=51.40 Aligned_cols=24 Identities=33% Similarity=0.692 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++|+|+|-||+||||+|..+....
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578889999999999999888777
No 488
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.22 E-value=0.64 Score=48.64 Aligned_cols=93 Identities=18% Similarity=0.309 Sum_probs=56.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----ccCCcCHH----
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL-RLEKIQEDIGKKIGLFDD----SWKNKSFE---- 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~---- 248 (626)
.-.-++|.|..|+|||||+.++..... ..+=+.++++-+.+.. ...+++.++...-..... ...+++..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 456789999999999999999887662 2223467777776543 445666666432111110 00111111
Q ss_pred --HHHHHHHHHh---CCCcEEEEEeCCCC
Q 006902 249 --EKAVDILRRL---GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 --~~~~~l~~~l---~~k~~llvlDdv~~ 272 (626)
..+..+.+++ +++..|+++||+..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1233455555 57899999999954
No 489
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.20 E-value=0.28 Score=45.43 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=32.7
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|-+..+..+.-...+. .=+.++|..|+|||++|+.+-.-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhC
Confidence 45789888888876666653 467899999999999999887543
No 490
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.18 E-value=0.34 Score=48.01 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=41.1
Q ss_pred CCcccchHHHHHH---HHHHHhcC--CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCC
Q 006902 157 EPTIVGLQSQLEQ---VWRCLAEE--SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNF 210 (626)
Q Consensus 157 ~~~~vGr~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F 210 (626)
.+.+||..+..+. +++++.++ .-+.|.|+|++|.|||+||-.+.... --.-.|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCc
Confidence 4678998776664 67777665 46889999999999999999999887 434444
No 491
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=92.17 E-value=2.1 Score=44.49 Aligned_cols=78 Identities=26% Similarity=0.311 Sum_probs=62.1
Q ss_pred cccchHHHHHHHHHHHh---cCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc-------CHHHHH
Q 006902 159 TIVGLQSQLEQVWRCLA---EESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL-------RLEKIQ 228 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-------~~~~l~ 228 (626)
--|||+.+++.|.+.|. ++...+-.|.|-=|.|||.+++.+.+... .+.| .+..+.+|... ....+.
T Consensus 26 ~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~--~~~f-vvs~v~ls~e~~lh~~~g~~~~~Y 102 (416)
T PF10923_consen 26 IAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERAL--EKGF-VVSEVDLSPERPLHGTGGQLEALY 102 (416)
T ss_pred eeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHH--HcCC-EEEEEecCCCcccccccccHHHHH
Confidence 34999999999988876 46778889999999999999999999873 4555 46666666532 567899
Q ss_pred HHHHHHhCCCC
Q 006902 229 EDIGKKIGLFD 239 (626)
Q Consensus 229 ~~i~~~l~~~~ 239 (626)
++|++.+....
T Consensus 103 r~l~~nL~t~~ 113 (416)
T PF10923_consen 103 RELMRNLSTKT 113 (416)
T ss_pred HHHHHhcCCCC
Confidence 99999997654
No 492
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.16 E-value=0.13 Score=46.72 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+|.|.|..|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999997754
No 493
>PLN02348 phosphoribulokinase
Probab=92.09 E-value=0.16 Score=51.84 Aligned_cols=27 Identities=33% Similarity=0.655 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+..-+|+|.|.+|.||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999987
No 494
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.09 E-value=0.13 Score=44.88 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 161 VGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 161 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
||....++++.+.+.. ....-|-|.|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666677777777754 455667899999999999999998876
No 495
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.07 E-value=0.67 Score=48.39 Aligned_cols=94 Identities=14% Similarity=0.229 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccC--CCC---------eEEEEEecCccCHHHHHHHHHHHhCCCCCc-----
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQN--NFD---------CVIWVVVSKELRLEKIQEDIGKKIGLFDDS----- 241 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~F~---------~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~----- 241 (626)
.-.-++|.|-.|+|||||+.++.+.. +..+ ..| .+++.-+.+.....+.+.+.+..-+.-...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 45678999999999999999999876 2100 022 567777777765555555555544411110
Q ss_pred cCCcCH-H-----HHHHHHHHHhC---CCcEEEEEeCCCC
Q 006902 242 WKNKSF-E-----EKAVDILRRLG---EKRFVLLLDDIWE 272 (626)
Q Consensus 242 ~~~~~~-~-----~~~~~l~~~l~---~k~~llvlDdv~~ 272 (626)
..+.+. . ..+..+.++++ ++..|+++||+..
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 011111 1 11233444444 6999999999954
No 496
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.05 E-value=0.1 Score=49.63 Aligned_cols=24 Identities=50% Similarity=0.570 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 468899999999999999998876
No 497
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.05 E-value=0.42 Score=51.47 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCccccccc---cCCCCCCCCCCcEEEEecCChHHHhhhcc
Q 006902 249 EKAVDILRRLGEKRFVLLLDDIWERVDLTEV---GVPLPSPQNTTSKVVFTTRFIDVCGSMEK 308 (626)
Q Consensus 249 ~~~~~l~~~l~~k~~llvlDdv~~~~~~~~l---~~~~~~~~~~~s~iivTtr~~~va~~~~~ 308 (626)
.+.-.+.+.|-.++=+|+||.=-+.-+.+.+ ...+ ..-+| .+||.|.++.....+.+
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L--~~~~g-tviiVSHDR~FLd~V~t 218 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL--KRYPG-TVIVVSHDRYFLDNVAT 218 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH--HhCCC-cEEEEeCCHHHHHHHhh
Confidence 3345577777788889999987655332222 1111 12235 79999999988877766
No 498
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.04 E-value=0.14 Score=46.46 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.|.|+|+.|.||||+|+.+.+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999876
No 499
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.03 E-value=0.75 Score=44.74 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCchHHHHH-HHHHHHHhhccCCCCeE-EEEEecCcc-CHHHHHHHHHHHhCCCCC----ccCCcCHHH-
Q 006902 178 SAGIIGLYGMGGVGKTTLL-TRINNKFLENQNNFDCV-IWVVVSKEL-RLEKIQEDIGKKIGLFDD----SWKNKSFEE- 249 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~-~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~- 249 (626)
+-.-++|+|..|+|||+|| ..+.+.. +-+.+ +++-+.+.. ...++..++...-..... ...++....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4567899999999999996 5555532 23444 566665553 455666665542211100 001111111
Q ss_pred -----HHHHHHHHh--CCCcEEEEEeCCCCc-cccccc
Q 006902 250 -----KAVDILRRL--GEKRFVLLLDDIWER-VDLTEV 279 (626)
Q Consensus 250 -----~~~~l~~~l--~~k~~llvlDdv~~~-~~~~~l 279 (626)
.+..+.+++ +++..|+++||+... ..+.++
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 112233333 589999999999553 334444
No 500
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.01 E-value=0.12 Score=50.30 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|.++|.+|+||||+|+.+....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999877
Done!