Query 006902
Match_columns 626
No_of_seqs 407 out of 3388
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 11:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 3.6E-21 1.2E-25 195.2 17.7 239 311-611 81-320 (328)
2 2a5y_B CED-4; apoptosis; HET: 99.9 7.7E-22 2.6E-26 214.0 12.9 142 158-307 128-282 (549)
3 1vt4_I APAF-1 related killer D 99.8 3.3E-19 1.1E-23 196.8 10.1 140 158-306 128-281 (1221)
4 4fcg_A Uncharacterized protein 99.7 3.5E-18 1.2E-22 173.1 12.0 205 312-576 105-310 (328)
5 3v47_A TOLL-like receptor 5B a 99.7 3.5E-17 1.2E-21 174.1 17.5 109 482-604 297-407 (455)
6 4fmz_A Internalin; leucine ric 99.7 4.5E-17 1.5E-21 166.7 15.3 58 312-373 67-124 (347)
7 2id5_A Lingo-1, leucine rich r 99.7 8.2E-17 2.8E-21 172.3 17.4 259 311-599 56-327 (477)
8 3zyi_A Leucine-rich repeat-con 99.7 7.5E-17 2.6E-21 171.2 15.2 220 311-598 75-296 (452)
9 3o6n_A APL1; leucine-rich repe 99.7 8.5E-17 2.9E-21 167.4 15.3 102 482-601 246-348 (390)
10 3zyj_A Leucine-rich repeat-con 99.7 1.2E-16 4.1E-21 169.0 16.2 220 312-599 65-286 (440)
11 2id5_A Lingo-1, leucine rich r 99.7 1E-16 3.6E-21 171.5 15.3 255 311-600 32-304 (477)
12 3oja_B Anopheles plasmodium-re 99.7 5.2E-17 1.8E-21 178.6 13.1 101 481-596 251-352 (597)
13 1ogq_A PGIP-2, polygalacturona 99.7 6.6E-18 2.3E-22 170.0 4.7 231 312-586 51-287 (313)
14 1ogq_A PGIP-2, polygalacturona 99.7 1.7E-17 6E-22 167.0 6.5 231 311-586 76-310 (313)
15 1xku_A Decorin; proteoglycan, 99.7 2.5E-16 8.5E-21 159.9 14.3 227 311-587 52-282 (330)
16 4fmz_A Internalin; leucine ric 99.7 1.8E-16 6E-21 162.3 13.2 247 312-600 89-341 (347)
17 3sfz_A APAF-1, apoptotic pepti 99.7 1.6E-16 5.4E-21 190.4 14.3 142 157-306 123-273 (1249)
18 2z66_A Variable lymphocyte rec 99.7 7.2E-17 2.5E-21 162.1 9.1 223 312-577 29-258 (306)
19 3zyi_A Leucine-rich repeat-con 99.7 2.8E-16 9.6E-21 166.8 14.0 199 311-554 99-301 (452)
20 2z80_A TOLL-like receptor 2, v 99.7 1.6E-16 5.6E-21 162.9 11.8 255 311-604 52-313 (353)
21 3oja_B Anopheles plasmodium-re 99.7 5E-16 1.7E-20 170.8 15.3 237 311-587 75-320 (597)
22 4eco_A Uncharacterized protein 99.7 9.6E-17 3.3E-21 177.6 9.5 233 322-589 194-478 (636)
23 3o6n_A APL1; leucine-rich repe 99.7 4.1E-16 1.4E-20 162.3 13.6 232 311-599 93-325 (390)
24 3t6q_A CD180 antigen; protein- 99.7 1.5E-16 5.1E-21 175.7 10.6 262 312-604 279-559 (606)
25 3zyj_A Leucine-rich repeat-con 99.7 5.1E-16 1.7E-20 164.2 14.2 199 311-554 88-290 (440)
26 3o53_A Protein LRIM1, AGAP0063 99.7 2.5E-16 8.7E-21 158.8 10.8 215 312-580 35-250 (317)
27 1o6v_A Internalin A; bacterial 99.6 2.2E-15 7.5E-20 160.6 18.2 236 312-600 69-317 (466)
28 1z6t_A APAF-1, apoptotic prote 99.6 4.1E-16 1.4E-20 171.4 12.4 140 157-306 123-273 (591)
29 4eco_A Uncharacterized protein 99.6 2E-16 6.8E-21 175.1 9.3 247 311-601 206-522 (636)
30 4ecn_A Leucine-rich repeat pro 99.6 8.8E-16 3E-20 173.3 14.7 270 311-606 515-841 (876)
31 1o6v_A Internalin A; bacterial 99.6 2E-15 6.7E-20 161.0 16.5 265 312-606 91-389 (466)
32 1xku_A Decorin; proteoglycan, 99.6 1.1E-15 3.8E-20 155.2 13.3 245 312-607 32-278 (330)
33 3oja_A Leucine-rich immune mol 99.6 5.6E-16 1.9E-20 165.6 11.6 215 312-580 35-250 (487)
34 3bz5_A Internalin-J, INLJ; leu 99.6 2.1E-15 7.3E-20 159.6 15.7 159 312-517 43-201 (457)
35 3rgz_A Protein brassinosteroid 99.6 6.9E-16 2.4E-20 174.7 12.4 257 312-587 395-724 (768)
36 3qfl_A MLA10; coiled-coil, (CC 99.6 2.1E-15 7.3E-20 125.4 12.0 83 7-97 1-84 (115)
37 2z66_A Variable lymphocyte rec 99.6 9.9E-16 3.4E-20 153.7 11.9 248 314-604 10-260 (306)
38 3vq2_A TLR4, TOLL-like recepto 99.6 2E-15 6.9E-20 166.6 15.1 59 312-372 105-166 (606)
39 3t6q_A CD180 antigen; protein- 99.6 1.5E-15 5.2E-20 167.6 13.9 177 312-517 255-435 (606)
40 3rgz_A Protein brassinosteroid 99.6 1.1E-15 3.7E-20 173.1 12.8 182 312-524 369-555 (768)
41 2z7x_B TOLL-like receptor 1, v 99.6 7.8E-15 2.7E-19 158.7 18.5 101 312-435 46-149 (520)
42 4ecn_A Leucine-rich repeat pro 99.6 1E-15 3.5E-20 172.7 11.8 257 311-601 448-762 (876)
43 3vq2_A TLR4, TOLL-like recepto 99.6 6.8E-16 2.3E-20 170.4 9.5 260 311-604 285-557 (606)
44 3j0a_A TOLL-like receptor 5; m 99.6 4E-15 1.4E-19 170.3 15.6 109 311-436 48-160 (844)
45 3bz5_A Internalin-J, INLJ; leu 99.6 2.2E-15 7.5E-20 159.6 11.6 174 312-517 65-243 (457)
46 2ft3_A Biglycan; proteoglycan, 99.6 3.9E-15 1.3E-19 151.2 12.4 225 312-586 55-282 (332)
47 2z81_A CD282 antigen, TOLL-lik 99.6 3.2E-15 1.1E-19 162.9 11.8 61 312-373 51-112 (549)
48 2z7x_B TOLL-like receptor 1, v 99.6 1E-14 3.6E-19 157.7 15.7 145 447-604 321-480 (520)
49 2ft3_A Biglycan; proteoglycan, 99.6 3.8E-15 1.3E-19 151.3 11.4 238 311-598 78-326 (332)
50 2z81_A CD282 antigen, TOLL-lik 99.6 6.8E-15 2.3E-19 160.3 12.9 122 312-436 27-160 (549)
51 1ziw_A TOLL-like receptor 3; i 99.6 2.6E-14 9E-19 159.9 17.6 178 312-518 74-283 (680)
52 2z63_A TOLL-like receptor 4, v 99.6 2.2E-15 7.5E-20 165.0 8.6 247 311-604 282-530 (570)
53 1ozn_A Reticulon 4 receptor; N 99.6 5.4E-15 1.9E-19 146.7 10.6 218 315-578 15-236 (285)
54 3v47_A TOLL-like receptor 5B a 99.6 1E-14 3.6E-19 154.9 12.9 115 446-584 295-412 (455)
55 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.9E-14 6.5E-19 157.2 15.2 146 447-605 350-510 (562)
56 2xwt_C Thyrotropin receptor; s 99.6 6.7E-15 2.3E-19 141.9 10.2 200 312-580 32-239 (239)
57 2z63_A TOLL-like receptor 4, v 99.6 1.1E-14 3.7E-19 159.5 13.2 106 482-601 394-503 (570)
58 2z80_A TOLL-like receptor 2, v 99.6 1.4E-14 4.9E-19 148.3 12.3 230 311-579 76-313 (353)
59 2ast_B S-phase kinase-associat 99.5 2.3E-15 7.8E-20 153.2 5.4 233 311-585 70-310 (336)
60 1ziw_A TOLL-like receptor 3; i 99.5 3.1E-14 1E-18 159.4 15.0 193 312-524 50-264 (680)
61 1h6u_A Internalin H; cell adhe 99.5 1E-14 3.6E-19 146.2 10.0 57 312-372 42-98 (308)
62 3j0a_A TOLL-like receptor 5; m 99.5 6.4E-14 2.2E-18 160.2 17.9 84 311-409 73-159 (844)
63 2ast_B S-phase kinase-associat 99.5 1.9E-15 6.7E-20 153.7 4.7 226 312-577 48-282 (336)
64 1jl5_A Outer protein YOPM; leu 99.5 3.5E-15 1.2E-19 157.8 6.6 241 312-587 12-276 (454)
65 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.5E-13 5E-18 150.1 19.6 81 312-410 77-158 (562)
66 2xwt_C Thyrotropin receptor; s 99.5 3.3E-14 1.1E-18 137.0 12.9 201 322-594 22-231 (239)
67 3o53_A Protein LRIM1, AGAP0063 99.5 1.4E-14 4.8E-19 146.0 10.2 236 312-605 11-250 (317)
68 4ay9_X Follicle-stimulating ho 99.5 6.3E-14 2.2E-18 143.3 14.1 52 317-371 15-66 (350)
69 1ozn_A Reticulon 4 receptor; N 99.5 1.7E-14 5.7E-19 143.2 9.1 202 311-555 32-237 (285)
70 1wwl_A Monocyte differentiatio 99.5 1.9E-14 6.6E-19 144.6 9.7 247 312-605 44-309 (312)
71 2o6q_A Variable lymphocyte rec 99.5 6.3E-14 2.2E-18 137.7 13.1 197 312-578 17-216 (270)
72 1wwl_A Monocyte differentiatio 99.5 9.8E-15 3.4E-19 146.8 7.4 221 312-578 64-307 (312)
73 1h6u_A Internalin H; cell adhe 99.5 5.4E-14 1.9E-18 140.9 12.1 212 317-587 25-236 (308)
74 2z62_A TOLL-like receptor 4, v 99.5 4.5E-14 1.5E-18 139.3 10.8 198 312-577 29-234 (276)
75 3oja_A Leucine-rich immune mol 99.5 2.8E-14 9.4E-19 152.5 9.8 224 324-604 20-249 (487)
76 4ay9_X Follicle-stimulating ho 99.5 6.2E-14 2.1E-18 143.3 10.7 221 311-576 30-255 (350)
77 3g06_A SSPH2 (leucine-rich rep 99.5 1.2E-13 4E-18 150.9 12.3 98 484-606 201-298 (622)
78 2ca6_A RAN GTPase-activating p 99.5 1.4E-14 4.9E-19 150.3 4.2 239 311-578 32-314 (386)
79 4g8a_A TOLL-like receptor 4; l 99.5 2E-13 6.9E-18 151.3 12.6 83 503-599 490-574 (635)
80 2o6q_A Variable lymphocyte rec 99.4 2.3E-13 7.9E-18 133.7 10.8 177 311-554 37-216 (270)
81 3rfs_A Internalin B, repeat mo 99.4 1.7E-13 5.8E-18 134.8 9.1 199 312-587 42-242 (272)
82 3g06_A SSPH2 (leucine-rich rep 99.4 2.2E-13 7.4E-18 148.8 10.4 78 482-579 219-296 (622)
83 1p9a_G Platelet glycoprotein I 99.4 3.1E-13 1.1E-17 134.0 9.4 58 312-372 11-68 (290)
84 1p9a_G Platelet glycoprotein I 99.4 5.9E-13 2E-17 132.0 10.3 199 330-578 6-206 (290)
85 2z62_A TOLL-like receptor 4, v 99.4 1.5E-12 5E-17 128.4 12.2 219 316-604 12-236 (276)
86 1m9s_A Internalin B; cell inva 99.4 7.2E-13 2.5E-17 144.5 10.7 35 482-517 151-185 (605)
87 1m9s_A Internalin B; cell inva 99.4 6.1E-13 2.1E-17 145.0 9.8 166 312-519 44-209 (605)
88 1h6t_A Internalin B; cell adhe 99.4 9.2E-13 3.1E-17 130.8 10.3 164 312-553 47-210 (291)
89 1jl5_A Outer protein YOPM; leu 99.4 2.2E-12 7.4E-17 136.4 13.6 117 312-461 132-248 (454)
90 2ca6_A RAN GTPase-activating p 99.4 6.8E-14 2.3E-18 145.2 1.8 263 312-602 10-313 (386)
91 4glp_A Monocyte differentiatio 99.3 2.1E-12 7.3E-17 129.5 10.5 227 312-577 65-304 (310)
92 1h6t_A Internalin B; cell adhe 99.3 1.9E-12 6.5E-17 128.5 9.9 190 315-585 28-217 (291)
93 3rfs_A Internalin B, repeat mo 99.3 2.3E-12 7.9E-17 126.6 10.4 197 315-584 23-222 (272)
94 3m19_A Variable lymphocyte rec 99.3 3.6E-12 1.2E-16 123.6 10.0 58 312-372 15-72 (251)
95 1dce_A Protein (RAB geranylger 99.3 1.3E-13 4.5E-18 149.4 -0.5 206 311-573 349-566 (567)
96 3ogk_B Coronatine-insensitive 99.3 2.2E-12 7.6E-17 141.7 8.7 256 311-598 220-544 (592)
97 4ezg_A Putative uncharacterize 99.3 2.7E-12 9.2E-17 119.5 7.8 37 331-370 41-77 (197)
98 4ezg_A Putative uncharacterize 99.3 1.1E-11 3.7E-16 115.4 9.1 17 356-372 41-57 (197)
99 1xeu_A Internalin C; cellular 99.2 7.3E-12 2.5E-16 122.2 7.6 163 312-517 20-182 (263)
100 3ogk_B Coronatine-insensitive 99.2 2.7E-12 9.3E-17 141.0 4.7 111 446-577 432-548 (592)
101 3goz_A Leucine-rich repeat-con 99.2 1.9E-12 6.6E-17 132.9 3.0 240 312-578 23-295 (362)
102 1z7x_W Ribonuclease inhibitor; 99.2 4.6E-12 1.6E-16 134.7 4.5 188 312-517 29-237 (461)
103 4glp_A Monocyte differentiatio 99.2 1.5E-11 5E-16 123.4 6.2 203 311-554 91-305 (310)
104 2p1m_B Transport inhibitor res 99.2 7.6E-12 2.6E-16 137.5 4.3 236 311-579 211-518 (594)
105 3goz_A Leucine-rich repeat-con 99.2 1.2E-11 4.2E-16 126.8 4.4 253 315-600 2-292 (362)
106 3m19_A Variable lymphocyte rec 99.2 1.7E-10 6E-15 111.7 12.2 174 334-578 14-190 (251)
107 1z7x_W Ribonuclease inhibitor; 99.1 6.7E-12 2.3E-16 133.4 1.9 242 311-578 142-409 (461)
108 2o6s_A Variable lymphocyte rec 99.1 6.5E-11 2.2E-15 111.1 7.3 179 314-568 10-190 (208)
109 3cvr_A Invasion plasmid antige 99.1 6.1E-11 2.1E-15 127.8 7.1 180 312-559 60-246 (571)
110 2o6s_A Variable lymphocyte rec 99.1 1.4E-10 4.6E-15 108.9 6.4 154 312-525 29-183 (208)
111 1xeu_A Internalin C; cellular 99.0 1.8E-10 6.2E-15 112.3 7.2 167 332-554 17-183 (263)
112 4g8a_A TOLL-like receptor 4; l 99.0 3E-10 1E-14 125.6 8.7 237 311-578 328-578 (635)
113 1dce_A Protein (RAB geranylger 99.0 1.1E-11 3.8E-16 134.2 -3.5 206 331-597 346-565 (567)
114 2p1m_B Transport inhibitor res 99.0 2.1E-10 7.2E-15 126.0 5.1 138 331-493 102-244 (594)
115 3cvr_A Invasion plasmid antige 99.0 9.8E-10 3.3E-14 118.4 9.9 183 335-579 60-242 (571)
116 2v9t_B SLIT homolog 2 protein 99.0 6E-10 2E-14 105.4 6.8 147 314-517 14-162 (220)
117 2xot_A Amphoterin-induced prot 98.9 7.7E-10 2.6E-14 113.3 6.8 77 314-408 21-98 (361)
118 3e6j_A Variable lymphocyte rec 98.9 1.8E-09 6.2E-14 102.8 8.6 57 313-372 21-77 (229)
119 1w5s_A Origin recognition comp 98.9 3E-09 1E-13 111.0 9.3 114 158-273 22-150 (412)
120 2v70_A SLIT-2, SLIT homolog 2 98.9 2.4E-09 8.1E-14 101.3 7.4 147 314-517 14-163 (220)
121 3e6j_A Variable lymphocyte rec 98.9 2.5E-09 8.5E-14 101.9 6.9 130 311-495 40-170 (229)
122 2xot_A Amphoterin-induced prot 98.8 2.2E-09 7.5E-14 109.9 5.8 156 311-518 39-200 (361)
123 2qby_B CDC6 homolog 3, cell di 98.8 1E-08 3.4E-13 106.0 10.2 142 158-300 20-174 (384)
124 3sb4_A Hypothetical leucine ri 98.8 6.1E-09 2.1E-13 105.1 8.1 241 311-598 49-327 (329)
125 2ell_A Acidic leucine-rich nuc 98.8 2.4E-09 8E-14 96.6 4.3 130 311-495 24-158 (168)
126 2ell_A Acidic leucine-rich nuc 98.8 2.2E-08 7.5E-13 90.2 10.2 138 422-586 22-165 (168)
127 2je0_A Acidic leucine-rich nuc 98.8 5.3E-09 1.8E-13 92.2 5.4 80 312-409 18-99 (149)
128 2qen_A Walker-type ATPase; unk 98.7 1.3E-08 4.4E-13 103.6 8.1 133 158-302 12-176 (350)
129 2v9t_B SLIT homolog 2 protein 98.7 9.1E-09 3.1E-13 97.2 6.0 131 311-495 32-163 (220)
130 2qby_A CDC6 homolog 1, cell di 98.7 3E-08 1E-12 102.3 9.2 142 158-302 20-175 (386)
131 2fna_A Conserved hypothetical 98.7 5.3E-08 1.8E-12 99.3 10.5 133 158-302 13-182 (357)
132 1fnn_A CDC6P, cell division co 98.7 1.3E-07 4.6E-12 97.6 13.5 141 158-303 17-172 (389)
133 1ds9_A Outer arm dynein; leuci 98.6 2.3E-09 8E-14 99.6 -0.9 73 322-413 36-108 (198)
134 2je0_A Acidic leucine-rich nuc 98.6 1.7E-08 5.9E-13 88.8 4.2 127 423-575 16-148 (149)
135 2v70_A SLIT-2, SLIT homolog 2 98.6 2.2E-07 7.4E-12 87.7 11.8 129 425-578 33-164 (220)
136 4b8c_D Glucose-repressible alc 98.6 6.9E-09 2.4E-13 115.9 0.7 105 312-437 225-329 (727)
137 2v1u_A Cell division control p 98.6 3.2E-07 1.1E-11 94.6 13.1 115 158-273 19-142 (387)
138 1a9n_A U2A', U2A'; complex (nu 98.5 3.9E-08 1.3E-12 89.3 4.1 57 312-372 20-77 (176)
139 2wfh_A SLIT homolog 2 protein 98.5 7.3E-08 2.5E-12 88.9 5.6 60 312-372 32-91 (193)
140 2wfh_A SLIT homolog 2 protein 98.5 9.3E-08 3.2E-12 88.2 6.1 125 314-495 13-137 (193)
141 3sb4_A Hypothetical leucine ri 98.5 8.5E-08 2.9E-12 96.7 6.3 102 483-600 201-305 (329)
142 4b8c_D Glucose-repressible alc 98.5 8.3E-09 2.8E-13 115.3 -1.4 128 312-463 202-329 (727)
143 1a9n_A U2A', U2A'; complex (nu 98.5 7.7E-08 2.6E-12 87.3 5.2 83 482-577 62-150 (176)
144 1w8a_A SLIT protein; signaling 98.5 7.3E-08 2.5E-12 88.8 4.4 129 313-497 10-139 (192)
145 2o6r_A Variable lymphocyte rec 98.4 2E-07 7E-12 84.5 6.4 57 313-372 9-65 (177)
146 2chg_A Replication factor C sm 98.4 2.3E-07 7.8E-12 87.5 6.7 123 158-300 17-142 (226)
147 1w8a_A SLIT protein; signaling 98.4 2E-07 7E-12 85.8 4.1 81 312-408 30-112 (192)
148 1ds9_A Outer arm dynein; leuci 98.3 2E-08 6.8E-13 93.2 -3.1 64 330-411 14-83 (198)
149 2r9u_A Variable lymphocyte rec 98.3 3.2E-07 1.1E-11 82.9 4.9 82 312-409 34-116 (174)
150 4fdw_A Leucine rich hypothetic 98.3 4.7E-06 1.6E-10 86.0 14.1 240 312-606 136-384 (401)
151 3g39_A Variable lymphocyte rec 98.3 4.2E-07 1.4E-11 81.9 4.9 81 312-408 31-112 (170)
152 2o6r_A Variable lymphocyte rec 98.3 4.1E-07 1.4E-11 82.5 4.7 81 312-408 29-110 (177)
153 1njg_A DNA polymerase III subu 98.3 1.9E-06 6.5E-11 82.3 9.1 46 158-203 23-69 (250)
154 3te6_A Regulatory protein SIR3 98.3 6.8E-06 2.3E-10 81.0 13.0 113 159-273 21-144 (318)
155 3e4g_A ATP synthase subunit S, 98.2 9.2E-07 3.2E-11 78.8 5.4 37 485-521 115-153 (176)
156 3e4g_A ATP synthase subunit S, 98.2 5.8E-07 2E-11 80.1 2.9 87 484-582 61-154 (176)
157 2r9u_A Variable lymphocyte rec 98.2 9.1E-07 3.1E-11 79.9 3.8 78 313-408 14-91 (174)
158 3g39_A Variable lymphocyte rec 98.2 9.1E-07 3.1E-11 79.6 3.8 79 312-408 10-88 (170)
159 1jbk_A CLPB protein; beta barr 98.1 5.7E-06 1.9E-10 75.7 9.0 46 158-203 22-67 (195)
160 1sxj_B Activator 1 37 kDa subu 98.1 1.7E-06 5.8E-11 86.7 5.6 122 158-299 21-146 (323)
161 4fdw_A Leucine rich hypothetic 98.1 1.2E-05 4E-10 83.0 11.4 196 312-559 158-360 (401)
162 2ra8_A Uncharacterized protein 98.1 1.8E-06 6.1E-11 87.6 4.1 133 423-578 171-318 (362)
163 2ra8_A Uncharacterized protein 98.0 6.1E-06 2.1E-10 83.6 5.6 44 325-369 130-182 (362)
164 1iqp_A RFCS; clamp loader, ext 97.9 8.4E-06 2.9E-10 81.7 5.7 46 158-203 25-70 (327)
165 2p65_A Hypothetical protein PF 97.9 1.4E-05 4.8E-10 72.6 6.6 46 158-203 22-67 (187)
166 2ifg_A High affinity nerve gro 97.8 9.1E-06 3.1E-10 82.3 2.9 53 317-371 14-68 (347)
167 3un9_A NLR family member X1; l 97.7 8.7E-06 3E-10 83.1 1.8 34 483-517 210-249 (372)
168 2chq_A Replication factor C sm 97.7 3.3E-05 1.1E-09 77.0 5.4 119 158-299 17-141 (319)
169 2ifg_A High affinity nerve gro 97.5 0.00022 7.7E-09 71.9 9.3 84 481-577 28-113 (347)
170 3ec2_A DNA replication protein 97.5 9.1E-05 3.1E-09 67.0 5.6 117 163-299 19-142 (180)
171 3un9_A NLR family member X1; l 97.5 5.4E-05 1.9E-09 77.2 4.2 170 311-499 72-253 (372)
172 3syl_A Protein CBBX; photosynt 97.5 0.00017 5.9E-09 71.5 7.6 45 159-203 32-91 (309)
173 1jr3_A DNA polymerase III subu 97.4 0.00029 9.9E-09 71.9 8.5 46 158-203 16-62 (373)
174 3h4m_A Proteasome-activating n 97.4 0.00016 5.6E-09 70.7 5.9 46 158-203 17-75 (285)
175 2w58_A DNAI, primosome compone 97.4 0.00051 1.8E-08 63.2 9.0 52 164-218 35-90 (202)
176 3pvs_A Replication-associated 97.3 0.00077 2.6E-08 70.1 10.2 46 158-203 26-74 (447)
177 1d2n_A N-ethylmaleimide-sensit 97.3 0.0014 4.9E-08 63.4 11.4 46 158-203 33-88 (272)
178 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.0011 3.7E-08 63.7 10.3 46 158-203 6-63 (262)
179 3u61_B DNA polymerase accessor 97.2 0.00042 1.4E-08 69.2 7.1 117 158-300 26-146 (324)
180 1sxj_D Activator 1 41 kDa subu 97.2 0.00029 1E-08 71.2 5.2 46 158-203 37-82 (353)
181 3eie_A Vacuolar protein sortin 97.2 0.00045 1.6E-08 68.8 6.5 46 158-203 18-75 (322)
182 3pxg_A Negative regulator of g 97.1 0.0013 4.6E-08 69.0 10.1 46 158-203 180-225 (468)
183 2z4s_A Chromosomal replication 97.1 0.00068 2.3E-08 70.6 7.3 121 159-299 106-236 (440)
184 3cf0_A Transitional endoplasmi 97.1 0.0024 8.3E-08 62.8 10.6 46 158-203 15-73 (301)
185 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.0037 1.3E-07 62.0 12.0 46 158-203 12-69 (322)
186 1sxj_E Activator 1 40 kDa subu 97.1 0.00085 2.9E-08 67.8 7.5 46 158-203 14-60 (354)
187 3b9p_A CG5977-PA, isoform A; A 97.0 0.0019 6.5E-08 63.4 9.7 46 158-203 21-78 (297)
188 1sxj_A Activator 1 95 kDa subu 97.0 0.0011 3.9E-08 70.5 8.1 61 158-224 39-116 (516)
189 1hqc_A RUVB; extended AAA-ATPa 97.0 0.0024 8.3E-08 63.5 10.1 46 158-203 12-62 (324)
190 3rw6_A Nuclear RNA export fact 97.0 0.00056 1.9E-08 65.6 4.7 59 311-372 170-233 (267)
191 1lv7_A FTSH; alpha/beta domain 97.0 0.0028 9.7E-08 60.7 9.7 46 158-203 12-69 (257)
192 3d8b_A Fidgetin-like protein 1 96.9 0.0018 6.1E-08 65.5 8.4 46 158-203 84-141 (357)
193 1qvr_A CLPB protein; coiled co 96.9 0.0022 7.7E-08 72.8 9.8 46 158-203 170-215 (854)
194 1io0_A Tropomodulin; LRR prote 96.8 0.00068 2.3E-08 61.5 4.0 111 311-434 36-161 (185)
195 2zan_A Vacuolar protein sortin 96.8 0.0088 3E-07 62.3 12.6 46 158-203 134-191 (444)
196 1sxj_C Activator 1 40 kDa subu 96.8 0.0015 5.1E-08 65.6 6.5 46 158-203 25-70 (340)
197 3pfi_A Holliday junction ATP-d 96.8 0.0031 1.1E-07 63.2 8.8 46 158-203 29-79 (338)
198 4b4t_L 26S protease subunit RP 96.7 0.0053 1.8E-07 63.0 10.2 46 158-203 181-239 (437)
199 3pxi_A Negative regulator of g 96.7 0.0038 1.3E-07 69.9 9.9 46 158-203 180-225 (758)
200 4b4t_J 26S protease regulatory 96.7 0.0044 1.5E-07 62.6 9.2 46 158-203 148-206 (405)
201 3vfd_A Spastin; ATPase, microt 96.7 0.005 1.7E-07 63.0 9.8 46 158-203 115-172 (389)
202 3bos_A Putative DNA replicatio 96.7 0.0026 8.9E-08 60.0 7.0 60 158-220 28-90 (242)
203 2gno_A DNA polymerase III, gam 96.7 0.0054 1.9E-07 60.2 9.2 116 163-299 2-121 (305)
204 4b4t_K 26S protease regulatory 96.6 0.0054 1.8E-07 62.8 9.3 46 158-203 172-230 (428)
205 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0089 3E-07 67.0 11.8 46 158-203 186-231 (758)
206 4b4t_H 26S protease regulatory 96.6 0.0067 2.3E-07 62.2 9.6 46 158-203 209-267 (467)
207 4b4t_M 26S protease regulatory 96.6 0.0054 1.8E-07 62.9 8.8 46 158-203 181-239 (434)
208 3n70_A Transport activator; si 96.6 0.0017 5.9E-08 56.1 4.5 45 159-203 2-48 (145)
209 2qp9_X Vacuolar protein sortin 96.6 0.0021 7.1E-08 64.9 5.6 46 158-203 51-108 (355)
210 2r62_A Cell division protease 96.5 0.00074 2.5E-08 65.3 2.0 46 158-203 11-68 (268)
211 2kjq_A DNAA-related protein; s 96.5 0.0025 8.6E-08 55.3 4.7 56 159-220 19-74 (149)
212 4b4t_I 26S protease regulatory 96.5 0.0091 3.1E-07 60.6 9.4 46 158-203 182-240 (437)
213 2cvh_A DNA repair and recombin 96.4 0.0098 3.3E-07 55.2 9.0 89 178-273 19-117 (220)
214 4fs7_A Uncharacterized protein 96.4 0.013 4.5E-07 59.9 10.5 39 329-369 157-195 (394)
215 4fcw_A Chaperone protein CLPB; 96.4 0.011 3.7E-07 58.3 9.5 61 158-221 17-86 (311)
216 1n0w_A DNA repair protein RAD5 96.4 0.0099 3.4E-07 56.1 8.9 93 178-272 23-130 (243)
217 4fs7_A Uncharacterized protein 96.4 0.009 3.1E-07 61.2 9.1 208 312-575 163-374 (394)
218 3hr8_A Protein RECA; alpha and 96.3 0.012 3.9E-07 58.9 9.2 88 178-273 60-151 (356)
219 1l8q_A Chromosomal replication 96.2 0.013 4.4E-07 58.2 9.2 38 166-203 22-61 (324)
220 2x8a_A Nuclear valosin-contain 96.2 0.017 5.9E-07 55.7 9.7 46 158-203 10-68 (274)
221 3t15_A Ribulose bisphosphate c 96.2 0.0066 2.3E-07 59.4 6.6 26 178-203 35-60 (293)
222 3io5_A Recombination and repai 96.2 0.032 1.1E-06 54.2 11.0 88 180-273 29-123 (333)
223 2ce7_A Cell division protein F 96.1 0.016 5.4E-07 60.4 9.5 46 158-203 16-73 (476)
224 1v5w_A DMC1, meiotic recombina 96.1 0.026 8.9E-07 56.4 10.8 93 178-272 121-230 (343)
225 3rw6_A Nuclear RNA export fact 96.1 0.0028 9.7E-08 60.6 3.6 55 316-372 148-209 (267)
226 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0025 8.7E-08 62.1 3.2 70 178-272 122-193 (331)
227 4gt6_A Cell surface protein; l 96.1 0.037 1.3E-06 56.5 12.2 45 323-369 125-170 (394)
228 3hu3_A Transitional endoplasmi 96.1 0.0073 2.5E-07 63.5 6.8 46 158-203 204-262 (489)
229 2z43_A DNA repair and recombin 96.1 0.02 6.7E-07 56.9 9.5 92 178-271 106-213 (324)
230 1a5t_A Delta prime, HOLB; zinc 96.1 0.02 6.9E-07 57.1 9.5 40 164-203 8-48 (334)
231 3uk6_A RUVB-like 2; hexameric 95.9 0.0079 2.7E-07 60.9 6.1 46 158-203 44-94 (368)
232 1rz3_A Hypothetical protein rb 95.9 0.0099 3.4E-07 54.5 6.2 42 162-203 2-46 (201)
233 1ofh_A ATP-dependent HSL prote 95.9 0.0074 2.5E-07 59.4 5.6 46 158-203 15-74 (310)
234 1xp8_A RECA protein, recombina 95.9 0.031 1.1E-06 56.1 10.0 86 178-271 73-162 (366)
235 2qgz_A Helicase loader, putati 95.9 0.013 4.3E-07 57.7 7.0 41 163-203 133-176 (308)
236 1io0_A Tropomodulin; LRR prote 95.9 0.0042 1.4E-07 56.1 3.3 93 327-431 29-128 (185)
237 4gt6_A Cell surface protein; l 95.9 0.084 2.9E-06 53.8 13.5 55 312-368 88-146 (394)
238 2zr9_A Protein RECA, recombina 95.8 0.031 1.1E-06 55.9 9.6 87 178-272 60-150 (349)
239 2dhr_A FTSH; AAA+ protein, hex 95.8 0.033 1.1E-06 58.4 9.9 46 158-203 31-88 (499)
240 3co5_A Putative two-component 95.7 0.0041 1.4E-07 53.5 2.4 46 158-203 4-51 (143)
241 2i1q_A DNA repair and recombin 95.7 0.027 9.4E-07 55.8 8.7 92 178-271 97-214 (322)
242 3m6a_A ATP-dependent protease 95.7 0.041 1.4E-06 58.7 10.5 46 158-203 81-132 (543)
243 1in4_A RUVB, holliday junction 95.6 0.0079 2.7E-07 60.1 4.5 46 158-203 25-75 (334)
244 3c8u_A Fructokinase; YP_612366 95.6 0.012 4.3E-07 54.1 5.3 39 165-203 6-46 (208)
245 2b8t_A Thymidine kinase; deoxy 95.5 0.0057 1.9E-07 56.8 2.7 112 178-299 11-125 (223)
246 2px0_A Flagellar biosynthesis 95.5 0.05 1.7E-06 53.0 9.6 86 178-269 104-190 (296)
247 2bjv_A PSP operon transcriptio 95.5 0.014 4.7E-07 56.1 5.5 61 158-221 6-68 (265)
248 1u94_A RECA protein, recombina 95.5 0.043 1.5E-06 54.9 9.2 86 178-271 62-151 (356)
249 3cf2_A TER ATPase, transitiona 95.4 0.017 6E-07 63.9 6.7 92 158-272 204-308 (806)
250 2ga8_A Hypothetical 39.9 kDa p 95.2 0.025 8.5E-07 56.0 6.3 43 161-203 2-48 (359)
251 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.057 1.9E-06 50.3 8.6 48 178-230 22-69 (235)
252 1ypw_A Transitional endoplasmi 95.1 0.011 3.6E-07 66.5 3.8 46 158-203 204-262 (806)
253 2hf9_A Probable hydrogenase ni 95.1 0.026 8.9E-07 52.5 5.9 40 164-203 23-62 (226)
254 3kb2_A SPBC2 prophage-derived 95.0 0.014 4.8E-07 51.7 3.7 24 180-203 2-25 (173)
255 3dm5_A SRP54, signal recogniti 95.0 0.1 3.5E-06 53.5 10.4 26 178-203 99-124 (443)
256 2r44_A Uncharacterized protein 95.0 0.02 6.8E-07 57.0 5.1 44 158-203 27-70 (331)
257 3lw7_A Adenylate kinase relate 95.0 0.011 3.9E-07 52.4 3.0 20 180-199 2-21 (179)
258 1ojl_A Transcriptional regulat 95.0 0.017 6E-07 56.6 4.5 46 158-203 2-49 (304)
259 1pzn_A RAD51, DNA repair and r 95.0 0.062 2.1E-06 53.7 8.6 94 178-273 130-243 (349)
260 3e70_C DPA, signal recognition 94.9 0.15 5.1E-06 50.3 11.0 58 177-237 127-185 (328)
261 1qhx_A CPT, protein (chloramph 94.9 0.015 5.3E-07 51.8 3.5 24 180-203 4-27 (178)
262 3vaa_A Shikimate kinase, SK; s 94.9 0.016 5.4E-07 53.0 3.6 26 178-203 24-49 (199)
263 3lda_A DNA repair protein RAD5 94.8 0.1 3.6E-06 53.0 9.9 92 178-271 177-283 (400)
264 3rfe_A Platelet glycoprotein I 94.8 0.015 5.1E-07 49.0 3.0 54 315-371 12-67 (130)
265 2wsm_A Hydrogenase expression/ 94.8 0.025 8.7E-07 52.4 4.9 43 161-203 12-54 (221)
266 3uie_A Adenylyl-sulfate kinase 94.8 0.022 7.7E-07 52.0 4.4 29 175-203 21-49 (200)
267 1odf_A YGR205W, hypothetical 3 94.8 0.034 1.2E-06 54.0 5.8 27 177-203 29-55 (290)
268 1ixz_A ATP-dependent metallopr 94.7 0.033 1.1E-06 53.0 5.6 46 158-203 16-73 (254)
269 1kgd_A CASK, peripheral plasma 94.7 0.017 5.9E-07 51.7 3.3 25 179-203 5-29 (180)
270 4eun_A Thermoresistant glucoki 94.7 0.02 7E-07 52.2 3.9 27 177-203 27-53 (200)
271 1zp6_A Hypothetical protein AT 94.7 0.016 5.4E-07 52.4 3.1 25 178-202 8-32 (191)
272 3ice_A Transcription terminati 94.6 0.029 1E-06 55.9 4.9 53 169-222 163-216 (422)
273 1g5t_A COB(I)alamin adenosyltr 94.6 0.021 7.2E-07 51.4 3.5 116 179-300 28-163 (196)
274 3kl4_A SRP54, signal recogniti 94.6 0.25 8.5E-06 50.6 11.9 91 178-271 96-189 (433)
275 3nbx_X ATPase RAVA; AAA+ ATPas 94.6 0.056 1.9E-06 56.7 7.3 44 158-203 22-65 (500)
276 2yvu_A Probable adenylyl-sulfa 94.5 0.024 8.3E-07 51.0 3.9 26 178-203 12-37 (186)
277 1kag_A SKI, shikimate kinase I 94.5 0.017 5.9E-07 51.2 2.9 24 180-203 5-28 (173)
278 1vma_A Cell division protein F 94.5 0.12 4.3E-06 50.3 9.2 89 178-270 103-195 (306)
279 3trf_A Shikimate kinase, SK; a 94.5 0.023 7.7E-07 51.1 3.7 25 179-203 5-29 (185)
280 1ly1_A Polynucleotide kinase; 94.5 0.022 7.5E-07 50.8 3.5 22 180-201 3-24 (181)
281 3pxi_A Negative regulator of g 94.5 0.45 1.6E-05 53.0 14.9 60 158-220 491-559 (758)
282 1iy2_A ATP-dependent metallopr 94.4 0.042 1.4E-06 53.1 5.6 46 158-203 40-97 (278)
283 2c9o_A RUVB-like 1; hexameric 94.4 0.043 1.5E-06 57.2 6.0 46 158-203 37-87 (456)
284 1nks_A Adenylate kinase; therm 94.4 0.025 8.7E-07 51.0 3.7 24 180-203 2-25 (194)
285 3fwy_A Light-independent proto 94.4 0.023 7.9E-07 55.9 3.6 40 177-219 46-85 (314)
286 3t61_A Gluconokinase; PSI-biol 94.4 0.02 6.8E-07 52.4 3.0 25 179-203 18-42 (202)
287 1um8_A ATP-dependent CLP prote 94.4 0.042 1.4E-06 55.8 5.7 46 158-203 21-96 (376)
288 3hws_A ATP-dependent CLP prote 94.3 0.039 1.3E-06 55.7 5.4 45 159-203 16-75 (363)
289 1knq_A Gluconate kinase; ALFA/ 94.3 0.028 9.5E-07 50.0 3.8 25 179-203 8-32 (175)
290 2xxa_A Signal recognition part 94.3 0.37 1.3E-05 49.5 12.6 70 166-237 78-157 (433)
291 1ye8_A Protein THEP1, hypothet 94.3 0.028 9.6E-07 50.2 3.7 23 181-203 2-24 (178)
292 2jaq_A Deoxyguanosine kinase; 94.2 0.027 9.3E-07 51.4 3.6 23 181-203 2-24 (205)
293 1kht_A Adenylate kinase; phosp 94.2 0.028 9.5E-07 50.7 3.6 24 180-203 4-27 (192)
294 3iij_A Coilin-interacting nucl 94.2 0.026 9E-07 50.4 3.4 25 179-203 11-35 (180)
295 3tr0_A Guanylate kinase, GMP k 94.2 0.025 8.7E-07 51.7 3.3 25 179-203 7-31 (205)
296 2rhm_A Putative kinase; P-loop 94.2 0.033 1.1E-06 50.3 4.1 25 179-203 5-29 (193)
297 1j8m_F SRP54, signal recogniti 94.2 0.25 8.6E-06 48.0 10.5 89 179-270 98-189 (297)
298 1g8p_A Magnesium-chelatase 38 94.1 0.022 7.7E-07 57.0 3.0 46 158-203 24-69 (350)
299 2ffh_A Protein (FFH); SRP54, s 94.1 0.17 5.7E-06 51.8 9.5 88 179-270 98-189 (425)
300 3bh0_A DNAB-like replicative h 94.1 0.19 6.4E-06 49.5 9.6 52 178-234 67-118 (315)
301 2ze6_A Isopentenyl transferase 94.1 0.031 1.1E-06 53.1 3.8 24 180-203 2-25 (253)
302 2bdt_A BH3686; alpha-beta prot 94.1 0.03 1E-06 50.5 3.5 22 180-201 3-24 (189)
303 1sky_E F1-ATPase, F1-ATP synth 94.0 0.13 4.4E-06 52.9 8.4 53 178-232 150-203 (473)
304 3a00_A Guanylate kinase, GMP k 94.0 0.024 8.3E-07 51.0 2.8 24 180-203 2-25 (186)
305 1via_A Shikimate kinase; struc 93.9 0.028 9.7E-07 50.0 3.0 23 181-203 6-28 (175)
306 4gp7_A Metallophosphoesterase; 93.9 0.025 8.5E-07 50.2 2.6 23 178-200 8-30 (171)
307 2qor_A Guanylate kinase; phosp 93.9 0.029 1E-06 51.4 3.2 26 178-203 11-36 (204)
308 2bbw_A Adenylate kinase 4, AK4 93.9 0.036 1.2E-06 52.4 3.9 26 178-203 26-51 (246)
309 3asz_A Uridine kinase; cytidin 93.9 0.039 1.3E-06 50.7 4.1 26 178-203 5-30 (211)
310 2j41_A Guanylate kinase; GMP, 93.9 0.035 1.2E-06 50.8 3.6 25 179-203 6-30 (207)
311 1cke_A CK, MSSA, protein (cyti 93.9 0.035 1.2E-06 51.7 3.6 24 180-203 6-29 (227)
312 2if2_A Dephospho-COA kinase; a 93.9 0.032 1.1E-06 51.0 3.3 22 180-201 2-23 (204)
313 1zuh_A Shikimate kinase; alpha 93.8 0.038 1.3E-06 48.7 3.6 26 178-203 6-31 (168)
314 3tau_A Guanylate kinase, GMP k 93.8 0.037 1.3E-06 50.9 3.6 26 178-203 7-32 (208)
315 1lvg_A Guanylate kinase, GMP k 93.8 0.032 1.1E-06 50.9 3.1 25 179-203 4-28 (198)
316 2c95_A Adenylate kinase 1; tra 93.8 0.042 1.4E-06 49.7 3.9 26 178-203 8-33 (196)
317 1tev_A UMP-CMP kinase; ploop, 93.7 0.041 1.4E-06 49.7 3.8 25 179-203 3-27 (196)
318 1gvn_B Zeta; postsegregational 93.7 0.066 2.3E-06 51.9 5.4 26 178-203 32-57 (287)
319 1y63_A LMAJ004144AAA protein; 93.7 0.042 1.4E-06 49.3 3.8 25 178-202 9-33 (184)
320 2yhs_A FTSY, cell division pro 93.7 0.21 7.3E-06 51.7 9.3 26 178-203 292-317 (503)
321 2iyv_A Shikimate kinase, SK; t 93.7 0.032 1.1E-06 50.1 2.9 24 180-203 3-26 (184)
322 3cm0_A Adenylate kinase; ATP-b 93.7 0.043 1.5E-06 49.2 3.8 24 180-203 5-28 (186)
323 1xjc_A MOBB protein homolog; s 93.6 0.048 1.6E-06 48.0 3.8 26 178-203 3-28 (169)
324 2plr_A DTMP kinase, probable t 93.6 0.049 1.7E-06 50.0 4.1 25 179-203 4-28 (213)
325 4a74_A DNA repair and recombin 93.6 0.12 4.3E-06 47.9 7.0 58 178-237 24-85 (231)
326 2bwj_A Adenylate kinase 5; pho 93.6 0.043 1.5E-06 49.8 3.6 25 179-203 12-36 (199)
327 1uf9_A TT1252 protein; P-loop, 93.6 0.046 1.6E-06 49.8 3.8 24 178-201 7-30 (203)
328 2pt5_A Shikimate kinase, SK; a 93.5 0.045 1.6E-06 48.1 3.6 23 181-203 2-24 (168)
329 1znw_A Guanylate kinase, GMP k 93.5 0.041 1.4E-06 50.5 3.4 26 178-203 19-44 (207)
330 2p5t_B PEZT; postsegregational 93.5 0.068 2.3E-06 50.8 5.0 26 178-203 31-56 (253)
331 1e6c_A Shikimate kinase; phosp 93.5 0.038 1.3E-06 48.9 3.1 24 180-203 3-26 (173)
332 2qt1_A Nicotinamide riboside k 93.5 0.042 1.5E-06 50.3 3.4 25 178-202 20-44 (207)
333 2ck3_D ATP synthase subunit be 93.4 0.46 1.6E-05 48.8 11.2 63 170-234 143-207 (482)
334 3ney_A 55 kDa erythrocyte memb 93.4 0.051 1.7E-06 49.2 3.7 26 178-203 18-43 (197)
335 2pbr_A DTMP kinase, thymidylat 93.4 0.048 1.6E-06 49.2 3.6 23 181-203 2-24 (195)
336 3aez_A Pantothenate kinase; tr 93.4 0.049 1.7E-06 53.5 3.9 26 178-203 89-114 (312)
337 1htw_A HI0065; nucleotide-bind 93.4 0.049 1.7E-06 47.5 3.5 27 177-203 31-57 (158)
338 1qf9_A UMP/CMP kinase, protein 93.4 0.051 1.7E-06 49.0 3.8 25 179-203 6-30 (194)
339 2cdn_A Adenylate kinase; phosp 93.4 0.049 1.7E-06 49.6 3.7 26 178-203 19-44 (201)
340 1jjv_A Dephospho-COA kinase; P 93.3 0.042 1.4E-06 50.3 3.1 22 180-201 3-24 (206)
341 3umf_A Adenylate kinase; rossm 93.3 0.056 1.9E-06 49.8 4.0 26 178-203 28-53 (217)
342 3tqc_A Pantothenate kinase; bi 93.3 0.081 2.8E-06 51.9 5.3 26 178-203 91-116 (321)
343 1ukz_A Uridylate kinase; trans 93.3 0.055 1.9E-06 49.4 3.9 26 178-203 14-39 (203)
344 1gtv_A TMK, thymidylate kinase 93.3 0.031 1.1E-06 51.5 2.2 24 180-203 1-24 (214)
345 1g41_A Heat shock protein HSLU 93.2 0.066 2.3E-06 54.9 4.7 46 158-203 15-74 (444)
346 1z6g_A Guanylate kinase; struc 93.2 0.04 1.4E-06 51.1 2.8 26 178-203 22-47 (218)
347 2f1r_A Molybdopterin-guanine d 93.2 0.045 1.5E-06 48.5 2.9 24 180-203 3-26 (171)
348 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.058 2E-06 51.5 3.9 25 179-203 4-28 (260)
349 1ex7_A Guanylate kinase; subst 93.1 0.048 1.6E-06 49.0 3.0 24 180-203 2-25 (186)
350 2grj_A Dephospho-COA kinase; T 93.1 0.059 2E-06 48.7 3.7 26 178-203 11-36 (192)
351 2wwf_A Thymidilate kinase, put 93.1 0.063 2.2E-06 49.3 3.9 32 179-212 10-41 (212)
352 2jeo_A Uridine-cytidine kinase 93.0 0.07 2.4E-06 50.4 4.3 26 178-203 24-49 (245)
353 2vli_A Antibiotic resistance p 93.0 0.04 1.4E-06 49.3 2.4 25 179-203 5-29 (183)
354 1nn5_A Similar to deoxythymidy 93.0 0.064 2.2E-06 49.3 3.9 26 178-203 8-33 (215)
355 2j37_W Signal recognition part 93.0 0.99 3.4E-05 47.2 13.2 26 178-203 100-125 (504)
356 1ls1_A Signal recognition part 93.0 0.31 1.1E-05 47.3 8.9 26 178-203 97-122 (295)
357 4e22_A Cytidylate kinase; P-lo 93.0 0.056 1.9E-06 51.3 3.5 26 178-203 26-51 (252)
358 4a1f_A DNAB helicase, replicat 92.9 0.29 9.8E-06 48.4 8.6 52 178-234 45-96 (338)
359 1s96_A Guanylate kinase, GMP k 92.9 0.056 1.9E-06 50.0 3.3 26 178-203 15-40 (219)
360 1fx0_B ATP synthase beta chain 92.9 0.34 1.2E-05 50.0 9.3 101 170-272 155-277 (498)
361 1uj2_A Uridine-cytidine kinase 92.9 0.064 2.2E-06 50.9 3.8 26 178-203 21-46 (252)
362 3fb4_A Adenylate kinase; psych 92.9 0.064 2.2E-06 49.4 3.7 23 181-203 2-24 (216)
363 1aky_A Adenylate kinase; ATP:A 92.9 0.07 2.4E-06 49.4 3.9 25 179-203 4-28 (220)
364 2i3b_A HCR-ntpase, human cance 92.8 0.056 1.9E-06 48.7 3.1 24 180-203 2-25 (189)
365 3tlx_A Adenylate kinase 2; str 92.8 0.14 4.8E-06 48.2 6.0 27 177-203 27-53 (243)
366 1rj9_A FTSY, signal recognitio 92.8 0.073 2.5E-06 52.0 4.1 26 178-203 101-126 (304)
367 1m7g_A Adenylylsulfate kinase; 92.7 0.074 2.5E-06 48.9 3.8 27 177-203 23-49 (211)
368 3cmu_A Protein RECA, recombina 92.7 0.27 9.2E-06 59.6 9.4 86 178-271 1426-1515(2050)
369 2z0h_A DTMP kinase, thymidylat 92.7 0.072 2.4E-06 48.2 3.7 23 181-203 2-24 (197)
370 2pez_A Bifunctional 3'-phospho 92.7 0.085 2.9E-06 47.0 4.1 26 178-203 4-29 (179)
371 1zd8_A GTP:AMP phosphotransfer 92.6 0.067 2.3E-06 49.8 3.5 25 179-203 7-31 (227)
372 3nwj_A ATSK2; P loop, shikimat 92.5 0.061 2.1E-06 50.9 3.1 25 179-203 48-72 (250)
373 3p32_A Probable GTPase RV1496/ 92.5 0.16 5.4E-06 50.9 6.3 37 167-203 65-103 (355)
374 2onk_A Molybdate/tungstate ABC 92.4 0.075 2.5E-06 50.0 3.4 26 177-203 23-48 (240)
375 3dl0_A Adenylate kinase; phosp 92.4 0.071 2.4E-06 49.2 3.2 23 181-203 2-24 (216)
376 1zak_A Adenylate kinase; ATP:A 92.3 0.075 2.6E-06 49.3 3.4 25 179-203 5-29 (222)
377 2ehv_A Hypothetical protein PH 92.3 0.07 2.4E-06 50.4 3.2 25 178-202 29-53 (251)
378 1np6_A Molybdopterin-guanine d 92.3 0.093 3.2E-06 46.5 3.7 25 179-203 6-30 (174)
379 1cr0_A DNA primase/helicase; R 92.3 0.22 7.5E-06 48.4 6.8 54 178-235 34-87 (296)
380 2v54_A DTMP kinase, thymidylat 92.3 0.085 2.9E-06 48.0 3.6 25 179-203 4-28 (204)
381 1sq5_A Pantothenate kinase; P- 92.3 0.15 5.1E-06 50.0 5.6 27 177-203 78-104 (308)
382 3k1j_A LON protease, ATP-depen 92.2 0.11 3.8E-06 56.3 5.0 44 158-203 41-84 (604)
383 3b9q_A Chloroplast SRP recepto 92.1 0.096 3.3E-06 51.1 4.0 26 178-203 99-124 (302)
384 3tif_A Uncharacterized ABC tra 92.1 0.074 2.5E-06 49.8 3.0 26 178-203 30-55 (235)
385 3ake_A Cytidylate kinase; CMP 92.1 0.093 3.2E-06 47.9 3.7 23 181-203 4-26 (208)
386 1vht_A Dephospho-COA kinase; s 92.1 0.087 3E-06 48.7 3.4 23 179-201 4-26 (218)
387 1zu4_A FTSY; GTPase, signal re 92.1 0.27 9.1E-06 48.4 7.1 26 178-203 104-129 (320)
388 3r20_A Cytidylate kinase; stru 92.0 0.095 3.3E-06 48.8 3.6 25 179-203 9-33 (233)
389 3d3q_A TRNA delta(2)-isopenten 92.0 0.086 3E-06 52.0 3.5 24 180-203 8-31 (340)
390 3lnc_A Guanylate kinase, GMP k 92.0 0.056 1.9E-06 50.5 2.1 26 178-203 26-52 (231)
391 3sr0_A Adenylate kinase; phosp 92.0 0.099 3.4E-06 47.8 3.7 23 181-203 2-24 (206)
392 2pcj_A ABC transporter, lipopr 92.0 0.077 2.6E-06 49.3 3.0 26 178-203 29-54 (224)
393 3end_A Light-independent proto 91.9 0.17 5.8E-06 49.5 5.6 43 176-221 38-80 (307)
394 3l0o_A Transcription terminati 91.9 0.57 1.9E-05 46.7 9.0 51 169-221 164-216 (427)
395 3be4_A Adenylate kinase; malar 91.9 0.1 3.5E-06 48.2 3.6 24 180-203 6-29 (217)
396 1e4v_A Adenylate kinase; trans 91.8 0.1 3.5E-06 48.0 3.6 23 181-203 2-24 (214)
397 3b85_A Phosphate starvation-in 91.8 0.068 2.3E-06 49.0 2.3 25 178-202 21-45 (208)
398 1tue_A Replication protein E1; 91.8 0.22 7.6E-06 45.0 5.6 39 165-203 43-82 (212)
399 1oix_A RAS-related protein RAB 91.7 0.097 3.3E-06 47.2 3.3 25 179-203 29-53 (191)
400 2xb4_A Adenylate kinase; ATP-b 91.7 0.1 3.6E-06 48.4 3.6 23 181-203 2-24 (223)
401 2f6r_A COA synthase, bifunctio 91.7 0.092 3.2E-06 50.7 3.3 23 178-200 74-96 (281)
402 2cbz_A Multidrug resistance-as 91.6 0.09 3.1E-06 49.3 3.0 26 178-203 30-55 (237)
403 2d2e_A SUFC protein; ABC-ATPas 91.6 0.095 3.3E-06 49.6 3.2 25 178-202 28-52 (250)
404 1yrb_A ATP(GTP)binding protein 91.5 0.13 4.4E-06 49.0 4.1 26 178-203 13-38 (262)
405 1b0u_A Histidine permease; ABC 91.5 0.092 3.2E-06 50.1 3.0 26 178-203 31-56 (262)
406 1ak2_A Adenylate kinase isoenz 91.5 0.12 4E-06 48.4 3.7 25 179-203 16-40 (233)
407 3gfo_A Cobalt import ATP-bindi 91.5 0.094 3.2E-06 50.4 3.0 26 178-203 33-58 (275)
408 1nlf_A Regulatory protein REPA 91.4 0.2 6.8E-06 48.3 5.3 43 178-221 29-79 (279)
409 1ji0_A ABC transporter; ATP bi 91.4 0.088 3E-06 49.5 2.7 26 178-203 31-56 (240)
410 2zu0_C Probable ATP-dependent 91.4 0.1 3.5E-06 49.9 3.2 25 178-202 45-69 (267)
411 2og2_A Putative signal recogni 91.3 0.13 4.6E-06 51.3 4.0 26 178-203 156-181 (359)
412 1sgw_A Putative ABC transporte 91.3 0.077 2.6E-06 48.9 2.1 26 178-203 34-59 (214)
413 2olj_A Amino acid ABC transpor 91.3 0.1 3.5E-06 49.7 3.0 26 178-203 49-74 (263)
414 4g1u_C Hemin import ATP-bindin 91.2 0.1 3.5E-06 49.9 3.0 26 178-203 36-61 (266)
415 1g6h_A High-affinity branched- 91.2 0.1 3.6E-06 49.6 3.0 26 178-203 32-57 (257)
416 2pze_A Cystic fibrosis transme 91.2 0.11 3.6E-06 48.6 3.0 26 178-203 33-58 (229)
417 1mv5_A LMRA, multidrug resista 91.2 0.098 3.4E-06 49.3 2.8 26 178-203 27-52 (243)
418 2f9l_A RAB11B, member RAS onco 91.1 0.11 3.9E-06 47.0 3.1 23 180-202 6-28 (199)
419 2ff7_A Alpha-hemolysin translo 91.1 0.11 3.7E-06 49.1 3.0 26 178-203 34-59 (247)
420 2dr3_A UPF0273 protein PH0284; 91.1 0.19 6.4E-06 47.2 4.7 48 178-230 22-69 (247)
421 1a7j_A Phosphoribulokinase; tr 91.1 0.082 2.8E-06 51.3 2.2 26 178-203 4-29 (290)
422 1vpl_A ABC transporter, ATP-bi 91.1 0.098 3.4E-06 49.7 2.7 26 178-203 40-65 (256)
423 3crm_A TRNA delta(2)-isopenten 91.0 0.13 4.5E-06 50.3 3.6 24 180-203 6-29 (323)
424 4eaq_A DTMP kinase, thymidylat 91.0 0.26 8.9E-06 45.9 5.5 26 178-203 25-50 (229)
425 2ixe_A Antigen peptide transpo 90.9 0.1 3.5E-06 50.1 2.7 26 178-203 44-69 (271)
426 2eyu_A Twitching motility prot 90.9 0.15 5.1E-06 48.6 3.8 113 176-304 22-137 (261)
427 2ghi_A Transport protein; mult 90.9 0.12 4E-06 49.3 3.0 26 178-203 45-70 (260)
428 2wji_A Ferrous iron transport 90.8 0.12 4.2E-06 45.1 3.0 23 180-202 4-26 (165)
429 2qi9_C Vitamin B12 import ATP- 90.8 0.11 3.7E-06 49.2 2.7 26 178-203 25-50 (249)
430 2yz2_A Putative ABC transporte 90.7 0.11 3.7E-06 49.7 2.7 26 178-203 32-57 (266)
431 4gzl_A RAS-related C3 botulinu 90.7 0.15 5.2E-06 46.4 3.6 38 166-203 17-54 (204)
432 1p9r_A General secretion pathw 90.7 0.42 1.4E-05 48.8 7.2 34 169-203 158-191 (418)
433 3lv8_A DTMP kinase, thymidylat 90.7 0.46 1.6E-05 44.3 6.8 37 178-216 26-62 (236)
434 2v9p_A Replication protein E1; 90.7 0.14 4.6E-06 49.9 3.3 27 177-203 124-150 (305)
435 2nq2_C Hypothetical ABC transp 90.7 0.11 3.8E-06 49.2 2.7 26 178-203 30-55 (253)
436 2ihy_A ABC transporter, ATP-bi 90.6 0.11 3.8E-06 50.0 2.7 26 178-203 46-71 (279)
437 1zj6_A ADP-ribosylation factor 90.6 0.24 8.1E-06 44.2 4.8 35 167-202 5-39 (187)
438 3io3_A DEHA2D07832P; chaperone 90.6 0.36 1.2E-05 48.0 6.5 50 174-224 13-62 (348)
439 1cp2_A CP2, nitrogenase iron p 90.6 0.3 1E-05 46.6 5.8 38 180-220 2-39 (269)
440 3cf2_A TER ATPase, transitiona 90.6 0.19 6.5E-06 55.6 4.7 91 158-271 477-580 (806)
441 3exa_A TRNA delta(2)-isopenten 90.6 0.14 4.6E-06 49.8 3.1 25 179-203 3-27 (322)
442 1r6b_X CLPA protein; AAA+, N-t 90.5 0.32 1.1E-05 54.3 6.7 46 158-203 458-512 (758)
443 2zej_A Dardarin, leucine-rich 90.5 0.13 4.3E-06 46.0 2.8 22 181-202 4-25 (184)
444 1q3t_A Cytidylate kinase; nucl 90.5 0.18 6.1E-06 47.2 3.9 26 178-203 15-40 (236)
445 4tmk_A Protein (thymidylate ki 90.5 0.48 1.6E-05 43.4 6.7 52 180-233 4-55 (213)
446 2dyk_A GTP-binding protein; GT 90.5 0.17 6E-06 43.6 3.6 23 180-202 2-24 (161)
447 1ltq_A Polynucleotide kinase; 90.5 0.15 5.1E-06 49.7 3.5 23 180-202 3-25 (301)
448 3cr8_A Sulfate adenylyltranfer 90.5 0.27 9.3E-06 52.1 5.7 43 161-203 349-393 (552)
449 3sop_A Neuronal-specific septi 90.4 0.15 5.1E-06 48.9 3.3 23 181-203 4-26 (270)
450 2r8r_A Sensor protein; KDPD, P 90.3 0.29 9.9E-06 45.0 5.0 37 181-220 8-44 (228)
451 2ce2_X GTPase HRAS; signaling 90.3 0.15 5.2E-06 44.1 3.1 23 181-203 5-27 (166)
452 3hjn_A DTMP kinase, thymidylat 90.2 0.55 1.9E-05 42.4 6.8 23 181-203 2-24 (197)
453 2ged_A SR-beta, signal recogni 90.2 0.32 1.1E-05 43.5 5.2 26 178-203 47-72 (193)
454 3iqw_A Tail-anchored protein t 90.1 0.47 1.6E-05 46.9 6.7 49 174-225 11-59 (334)
455 1g8f_A Sulfate adenylyltransfe 90.1 0.28 9.7E-06 51.3 5.3 45 159-203 373-419 (511)
456 3a8t_A Adenylate isopentenyltr 90.1 0.13 4.6E-06 50.4 2.7 26 178-203 39-64 (339)
457 3f9v_A Minichromosome maintena 90.1 0.094 3.2E-06 56.5 1.7 46 158-203 295-351 (595)
458 2wjg_A FEOB, ferrous iron tran 90.1 0.16 5.4E-06 45.3 3.0 23 180-202 8-30 (188)
459 1z2a_A RAS-related protein RAB 90.1 0.17 5.7E-06 44.1 3.1 24 180-203 6-29 (168)
460 3nh6_A ATP-binding cassette SU 90.0 0.14 4.8E-06 49.9 2.8 26 178-203 79-104 (306)
461 1q57_A DNA primase/helicase; d 90.0 1.2 4E-05 47.0 10.2 53 178-234 241-293 (503)
462 3kjh_A CO dehydrogenase/acetyl 90.0 0.42 1.4E-05 44.9 6.2 43 181-226 2-44 (254)
463 3cmu_A Protein RECA, recombina 90.0 0.66 2.3E-05 56.3 8.9 87 178-272 382-472 (2050)
464 1qvr_A CLPB protein; coiled co 90.0 0.19 6.6E-06 56.8 4.3 45 159-203 559-612 (854)
465 3con_A GTPase NRAS; structural 89.9 0.17 5.8E-06 45.3 3.1 24 180-203 22-45 (190)
466 3foz_A TRNA delta(2)-isopenten 89.9 0.2 6.7E-06 48.6 3.6 25 179-203 10-34 (316)
467 1svm_A Large T antigen; AAA+ f 89.8 0.35 1.2E-05 48.6 5.6 27 177-203 167-193 (377)
468 2pjz_A Hypothetical protein ST 89.8 0.15 5E-06 48.7 2.6 24 179-202 30-53 (263)
469 2vp4_A Deoxynucleoside kinase; 89.8 0.12 4.3E-06 48.1 2.1 25 178-202 19-43 (230)
470 1tq4_A IIGP1, interferon-induc 89.7 0.26 8.7E-06 50.2 4.5 34 169-202 57-92 (413)
471 4h09_A Hypothetical leucine ri 89.6 2.9 9.9E-05 41.8 12.5 232 322-602 101-343 (379)
472 3vr4_D V-type sodium ATPase su 89.6 0.42 1.4E-05 48.8 6.0 92 178-272 150-259 (465)
473 2ocp_A DGK, deoxyguanosine kin 89.6 0.23 7.9E-06 46.6 3.9 25 179-203 2-26 (241)
474 1moz_A ARL1, ADP-ribosylation 89.5 0.19 6.6E-06 44.5 3.2 33 169-201 7-40 (183)
475 3cmw_A Protein RECA, recombina 89.5 0.63 2.2E-05 55.7 8.2 83 180-270 384-470 (1706)
476 1r8s_A ADP-ribosylation factor 89.5 0.21 7.1E-06 43.3 3.3 22 182-203 3-24 (164)
477 1u8z_A RAS-related protein RAL 89.4 0.2 6.9E-06 43.4 3.1 24 180-203 5-28 (168)
478 1fzq_A ADP-ribosylation factor 89.4 0.26 9E-06 43.7 3.9 26 177-202 14-39 (181)
479 1c1y_A RAS-related protein RAP 89.4 0.2 6.9E-06 43.4 3.1 23 181-203 5-27 (167)
480 4edh_A DTMP kinase, thymidylat 89.4 0.69 2.4E-05 42.4 6.8 33 179-213 6-38 (213)
481 2afh_E Nitrogenase iron protei 89.4 0.23 7.8E-06 48.1 3.8 38 180-220 3-40 (289)
482 3fvq_A Fe(3+) IONS import ATP- 89.3 0.19 6.5E-06 50.0 3.2 26 178-203 29-54 (359)
483 2bbs_A Cystic fibrosis transme 89.3 0.19 6.4E-06 48.7 3.0 26 178-203 63-88 (290)
484 2nzj_A GTP-binding protein REM 89.3 0.17 5.8E-06 44.4 2.6 24 180-203 5-28 (175)
485 3eph_A TRNA isopentenyltransfe 89.2 0.24 8E-06 49.9 3.8 24 180-203 3-26 (409)
486 1m7b_A RND3/RHOE small GTP-bin 89.2 0.2 7E-06 44.5 3.1 24 180-203 8-31 (184)
487 2gj8_A MNME, tRNA modification 89.2 0.19 6.4E-06 44.3 2.8 23 180-202 5-27 (172)
488 3tui_C Methionine import ATP-b 89.2 0.2 6.8E-06 50.0 3.2 26 178-203 53-78 (366)
489 3ihw_A Centg3; RAS, centaurin, 89.1 0.21 7.1E-06 44.6 3.1 24 179-202 20-43 (184)
490 3jvv_A Twitching mobility prot 89.1 0.36 1.2E-05 48.2 5.0 117 175-305 119-236 (356)
491 3zvl_A Bifunctional polynucleo 89.1 0.18 6.2E-06 51.7 2.9 26 178-203 257-282 (416)
492 1z08_A RAS-related protein RAB 89.0 0.22 7.4E-06 43.4 3.1 23 180-202 7-29 (170)
493 1f6b_A SAR1; gtpases, N-termin 89.0 0.32 1.1E-05 44.0 4.3 32 170-201 15-47 (198)
494 3t1o_A Gliding protein MGLA; G 89.0 0.22 7.4E-06 44.7 3.1 24 180-203 15-38 (198)
495 3gmt_A Adenylate kinase; ssgci 89.0 0.24 8.2E-06 45.9 3.4 26 178-203 7-32 (230)
496 1z47_A CYSA, putative ABC-tran 88.9 0.22 7.4E-06 49.6 3.2 26 178-203 40-65 (355)
497 1kao_A RAP2A; GTP-binding prot 88.9 0.23 7.8E-06 43.0 3.1 23 181-203 5-27 (167)
498 3kta_A Chromosome segregation 88.9 0.23 7.9E-06 44.2 3.1 24 180-203 27-50 (182)
499 2erx_A GTP-binding protein DI- 88.9 0.2 7E-06 43.6 2.8 22 181-202 5-26 (172)
500 1ek0_A Protein (GTP-binding pr 88.8 0.23 7.9E-06 43.1 3.1 23 181-203 5-27 (170)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3.6e-21 Score=195.21 Aligned_cols=239 Identities=16% Similarity=0.176 Sum_probs=191.2
Q ss_pred CcccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 311 SSLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
.++++|+|+++.+..+|..++++.+|++|++++| .+..+|.. ++++++|++|++.+|.+. ..
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~-~~~l~~L~~L~Ls~n~l~----------------~l 142 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDT-MQQFAGLETLTLARNPLR----------------AL 142 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSC-GGGGTTCSEEEEESCCCC----------------CC
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHH-HhccCCCCEEECCCCccc----------------cC
Confidence 5799999999999999999999999999999999 58899998 999999999999999865 34
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
+..+.++++|+.|++..+.... .+ ...+..+.+ ...+..+++|+.|+++++.-. . .|.+
T Consensus 143 p~~l~~l~~L~~L~L~~n~~~~--~~------p~~~~~~~~-----------~~~~~~l~~L~~L~L~~n~l~-~-lp~~ 201 (328)
T 4fcg_A 143 PASIASLNRLRELSIRACPELT--EL------PEPLASTDA-----------SGEHQGLVNLQSLRLEWTGIR-S-LPAS 201 (328)
T ss_dssp CGGGGGCTTCCEEEEEEETTCC--CC------CSCSEEEC------------CCCEEESTTCCEEEEEEECCC-C-CCGG
T ss_pred cHHHhcCcCCCEEECCCCCCcc--cc------ChhHhhccc-----------hhhhccCCCCCEEECcCCCcC-c-chHh
Confidence 4568899999999988654321 01 111111111 123567889999999987544 3 3555
Q ss_pred ccccccccCccccCccCEEEEeCCCCCcccc-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceee
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLH 549 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~ 549 (626)
+. .+++|++|+|++|. +..+| .++.+++|+.|+|++|.....++. .++.+++|++|+
T Consensus 202 l~---------~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~------------~~~~l~~L~~L~ 259 (328)
T 4fcg_A 202 IA---------NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPP------------IFGGRAPLKRLI 259 (328)
T ss_dssp GG---------GCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCC------------CTTCCCCCCEEE
T ss_pred hc---------CCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHH------------HhcCCCCCCEEE
Confidence 54 78999999999974 44555 589999999999999987776655 568899999999
Q ss_pred cCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEeccccccccccccc
Q 006902 550 LSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQWWNRLQWED 611 (626)
Q Consensus 550 l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~~~l~~~~ 611 (626)
+++|...+.+|.....+++|++|++++|+.+..+|..... ++.+++...+..+...+.+..
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~~~l~~~~ 320 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQAQLDQHR 320 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGSCC-----
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHHHHHhhhh
Confidence 9999999999988899999999999999999999988765 889999999988887776653
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.86 E-value=7.7e-22 Score=214.00 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=118.6
Q ss_pred CcccchHHHHHHHHHHHhcC---CCeEEEEEcCCCchHHHHHHHHHH--HHhhccCCCCeEEEEEecCcc--CHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEE---SAGIIGLYGMGGVGKTTLLTRINN--KFLENQNNFDCVIWVVVSKEL--RLEKIQED 230 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~F~~~~wv~~s~~~--~~~~l~~~ 230 (626)
+..|||++++++|.++|..+ ..+||+|+||||+||||||+.+|+ +. +++.+|+.++||++++.+ +...+++.
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 34369999999999999764 689999999999999999999998 45 679999999999999985 89999999
Q ss_pred HHHHhCCCCC-----ccCCcCHHHHHHHHHHHhCCC-cEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHHh
Q 006902 231 IGKKIGLFDD-----SWKNKSFEEKAVDILRRLGEK-RFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVCG 304 (626)
Q Consensus 231 i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va~ 304 (626)
|+.+++.... .....+...+...+++.|.++ ||||||||||+...+ .+ + ..+||+||||||+..|+.
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~--~~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A--QELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H--HHTTCEEEEEESBGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c--ccCCCEEEEEcCCHHHHH
Confidence 9999986521 112335667889999999996 999999999998754 11 1 226999999999999998
Q ss_pred hhc
Q 006902 305 SME 307 (626)
Q Consensus 305 ~~~ 307 (626)
.++
T Consensus 280 ~~~ 282 (549)
T 2a5y_B 280 AAS 282 (549)
T ss_dssp GCC
T ss_pred HcC
Confidence 775
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.77 E-value=3.3e-19 Score=196.78 Aligned_cols=140 Identities=19% Similarity=0.257 Sum_probs=111.9
Q ss_pred CcccchHHHHHHHHHHHhc-CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCe-EEEEEecCccCHHHHHHHHHHHh
Q 006902 158 PTIVGLQSQLEQVWRCLAE-ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDC-VIWVVVSKELRLEKIQEDIGKKI 235 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~~~~~~l~~~i~~~l 235 (626)
+..|||+.++++|.++|.. +..++|+|+||||+||||||+++|++. +++.+|+. ++|+++++.++...++..+++.+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4459999999999999986 568999999999999999999999987 67889987 99999999999988888888754
Q ss_pred CCCCCcc----C-----CcCHHHHHHHHHHHh---CCCcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHH
Q 006902 236 GLFDDSW----K-----NKSFEEKAVDILRRL---GEKRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVC 303 (626)
Q Consensus 236 ~~~~~~~----~-----~~~~~~~~~~l~~~l---~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va 303 (626)
+.....+ . ..+.+.....+++.+ .+||+||||||||+...|..+. .||+||||||+..++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--------SSCCEEEECSCSHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC--------CCeEEEEeccChHHH
Confidence 3211000 0 112344566677655 7899999999999988887642 489999999999998
Q ss_pred hhh
Q 006902 304 GSM 306 (626)
Q Consensus 304 ~~~ 306 (626)
..+
T Consensus 279 ~~l 281 (1221)
T 1vt4_I 279 DFL 281 (1221)
T ss_dssp HHH
T ss_pred Hhc
Confidence 644
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=3.5e-18 Score=173.11 Aligned_cols=205 Identities=21% Similarity=0.214 Sum_probs=151.9
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+|++|+|++|.+..+|..++++.+|++|++++| .+..+|.+ +.++++|++|++.+|...+ ..+
T Consensus 105 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~L~~n~~~~---------------~~p 167 (328)
T 4fcg_A 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELSIRACPELT---------------ELP 167 (328)
T ss_dssp TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEEEEEEETTCC---------------CCC
T ss_pred CCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEEECCCCCCcc---------------ccC
Confidence 799999999999999999999999999999999 68899998 9999999999999986543 111
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
..+.... +......+++|+.|++.++.-. .++ ..+..+++|++|+++++.... .+..+
T Consensus 168 ~~~~~~~-----------------~~~~~~~l~~L~~L~L~~n~l~-~lp--~~l~~l~~L~~L~L~~N~l~~--l~~~l 225 (328)
T 4fcg_A 168 EPLASTD-----------------ASGEHQGLVNLQSLRLEWTGIR-SLP--ASIANLQNLKSLKIRNSPLSA--LGPAI 225 (328)
T ss_dssp SCSEEEC------------------CCCEEESTTCCEEEEEEECCC-CCC--GGGGGCTTCCEEEEESSCCCC--CCGGG
T ss_pred hhHhhcc-----------------chhhhccCCCCCEEECcCCCcC-cch--HhhcCCCCCCEEEccCCCCCc--Cchhh
Confidence 1222100 0001112344555555554322 221 246677788888888765443 23333
Q ss_pred cccccccCccccCccCEEEEeCCCCCccccc-cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeec
Q 006902 472 EIVRKRREPFVFRSLHHVTIYSCTKLKDSTF-LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHL 550 (626)
Q Consensus 472 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l 550 (626)
. .+++|++|++++|.....+|. ++.+++|+.|+|++|.....++. .++.+++|++|++
T Consensus 226 ~---------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~------------~~~~l~~L~~L~L 284 (328)
T 4fcg_A 226 H---------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL------------DIHRLTQLEKLDL 284 (328)
T ss_dssp G---------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT------------TGGGCTTCCEEEC
T ss_pred c---------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch------------hhhcCCCCCEEeC
Confidence 3 688999999999888877774 88899999999998877776665 4677899999999
Q ss_pred CCccccccccCCCCCCCCccEEEecC
Q 006902 551 SYLPILKSIYWKPLPFTHLKEMEVSG 576 (626)
Q Consensus 551 ~~~~~l~~i~~~~~~lp~L~~L~i~~ 576 (626)
++|+.++.+|.....+++|+.+.+..
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCchhhccHHHhhccCceEEeCCH
Confidence 99998999988888889888888764
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=3.5e-17 Score=174.06 Aligned_cols=109 Identities=22% Similarity=0.179 Sum_probs=72.9
Q ss_pred ccCccCEEEEeCCCCCcccc-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccc-
Q 006902 482 VFRSLHHVTIYSCTKLKDST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSI- 559 (626)
Q Consensus 482 ~l~~L~~L~L~~c~~l~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i- 559 (626)
.+++|++|++++|......+ .++.+++|+.|+|++|. +..++.. .+..+++|++|+++++. +..+
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~Ls~N~-l~~~~ 363 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSR-----------MFENLDKLEVLDLSYNH-IRALG 363 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGG-----------GGTTCTTCCEEECCSSC-CCEEC
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChh-----------HhcCcccCCEEECCCCc-ccccC
Confidence 45666777776653322222 36667777777777663 3333321 45778999999999874 4554
Q ss_pred cCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEecccccc
Q 006902 560 YWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQWW 604 (626)
Q Consensus 560 ~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~ 604 (626)
+.....+++|++|++.+| +++.+|......++.|+..+....-|
T Consensus 364 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence 556788999999999996 78899886655567777776544333
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=4.5e-17 Score=166.68 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=38.8
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCc
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFS 373 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 373 (626)
+|++|++++|.+..+|. +..+.+|++|++++| .+..+|. +.++++|++|++.+|.+..
T Consensus 67 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n~i~~ 124 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNEDNISD 124 (347)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTSCCCC
T ss_pred CccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCCcccC
Confidence 56777777777666665 666777777777776 4666653 6677777777777666543
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.72 E-value=8.2e-17 Score=172.33 Aligned_cols=259 Identities=19% Similarity=0.144 Sum_probs=163.9
Q ss_pred Cccccccccccccccc-chHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCC--Cccc-----
Q 006902 311 SSLELLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAP--EDSV----- 382 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~--~~~~----- 382 (626)
.+|++|+|++|.+..+ |..++++.+|++|+|++| .+..+|.+.+.++++|++|++.+|.+..+.... +..+
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 3677777777777766 567777777777777777 477777665677777777777777654321100 0000
Q ss_pred ccCC--ccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeeccc
Q 006902 383 LFGG--GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRG 460 (626)
Q Consensus 383 ~~~~--~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 460 (626)
+.++ ....+..+.++++|+.|.+..+....+.. .....+++|+.|++.++... .. ....+..+++|+.|+++++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~i~-~~-~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNIN-AI-RDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH--HHHTTCTTCCEEEEESCCCC-EE-CTTCSCSCTTCCEEEEECC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccCh--hHhcccCCCcEEeCCCCcCc-Ee-ChhhcccCcccceeeCCCC
Confidence 1111 11122345566667777666554332211 11122566777777766433 22 2235667778888888877
Q ss_pred CCcceEeeccccccccccCccccCccCEEEEeCCCCCcccc--ccccCCCccEEEEeccCccccccccCccccccccCCC
Q 006902 461 FELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGH 538 (626)
Q Consensus 461 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 538 (626)
..+..+.+... ...+|++|++++| .++.++ .+..+++|+.|+|+++. +..++.. .
T Consensus 211 ~~~~~~~~~~~----------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-----------~ 267 (477)
T 2id5_A 211 PYLDTMTPNCL----------YGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGS-----------M 267 (477)
T ss_dssp TTCCEECTTTT----------TTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTT-----------S
T ss_pred ccccccCcccc----------cCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChh-----------h
Confidence 76665433322 3458999999987 566666 37889999999999874 5555432 4
Q ss_pred CCcCCccceeecCCccccccc-cCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEec
Q 006902 539 ISPFENLQMLHLSYLPILKSI-YWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRG 599 (626)
Q Consensus 539 ~~~fp~L~~L~l~~~~~l~~i-~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~ 599 (626)
+..+++|++|+++++. +..+ +.....+++|++|++++| +++.+|......++.|+.++.
T Consensus 268 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp CTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEEC
T ss_pred ccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEc
Confidence 5778999999999864 5444 455678999999999997 788888755444556666553
No 8
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=7.5e-17 Score=171.22 Aligned_cols=220 Identities=19% Similarity=0.151 Sum_probs=116.6
Q ss_pred Cccccccccccccccc-chHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.++++|+|++|++..+ |..++++.+|++|+|++| .+..++...+.++++|++|++.+|.+..++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------- 139 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIP-------------- 139 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCC--------------
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccC--------------
Confidence 4677777777777766 456777777777777777 466666544777777777777777654311
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeec
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKID 469 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~ 469 (626)
...+..+++|+.|++..+.... + ....+..+++|+.|++++|..+..+...
T Consensus 140 -~~~~~~l~~L~~L~L~~N~l~~---------------------------~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 140 -SGAFEYLSKLRELWLRNNPIES---------------------------I-PSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp -TTTSSSCTTCCEEECCSCCCCE---------------------------E-CTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred -hhhhcccCCCCEEECCCCCcce---------------------------e-CHhHHhcCCcccEEeCCCCCCccccChh
Confidence 1124556666666554333221 1 1123445555555555555555544333
Q ss_pred cccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceee
Q 006902 470 YTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLH 549 (626)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~ 549 (626)
.+. .+++|++|+|++| .+..+|.+..+++|+.|+|++|. +..++.. .+..+++|++|+
T Consensus 191 ~~~---------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~ 248 (452)
T 3zyi_A 191 AFE---------GLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNH-FPEIRPG-----------SFHGLSSLKKLW 248 (452)
T ss_dssp TTT---------TCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSC-CSEECGG-----------GGTTCTTCCEEE
T ss_pred hcc---------CCCCCCEEECCCC-cccccccccccccccEEECcCCc-CcccCcc-----------cccCccCCCEEE
Confidence 333 4555555555554 44445555555555655555552 3323221 234455555555
Q ss_pred cCCccccccc-cCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEe
Q 006902 550 LSYLPILKSI-YWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIR 598 (626)
Q Consensus 550 l~~~~~l~~i-~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~ 598 (626)
++++ .+..+ +.....+++|++|++++| +|+.+|......++.|+..+
T Consensus 249 L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 249 VMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp CTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEE
T ss_pred eCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEE
Confidence 5553 23332 223444555556655554 55555544333344444443
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=8.5e-17 Score=167.42 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=69.4
Q ss_pred ccCccCEEEEeCCCCCcccc-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcccccccc
Q 006902 482 VFRSLHHVTIYSCTKLKDST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIY 560 (626)
Q Consensus 482 ~l~~L~~L~L~~c~~l~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~ 560 (626)
.+++|++|++++|......+ .+..+++|+.|+|++| .+..++. ....+|+|++|+++++ .+..++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------~~~~l~~L~~L~L~~n-~l~~~~ 311 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL------------YGQPIPTLKVLDLSHN-HLLHVE 311 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEEC------------SSSCCTTCCEEECCSS-CCCCCG
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCc------------ccCCCCCCCEEECCCC-cceecC
Confidence 66777777777763332223 3677777888877776 3444433 3467899999999886 677777
Q ss_pred CCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEeccc
Q 006902 561 WKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDT 601 (626)
Q Consensus 561 ~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~ 601 (626)
.....+++|++|++.+| .++.+|... ++.|+..+...
T Consensus 312 ~~~~~l~~L~~L~L~~N-~i~~~~~~~---~~~L~~L~l~~ 348 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHN-SIVTLKLST---HHTLKNLTLSH 348 (390)
T ss_dssp GGHHHHTTCSEEECCSS-CCCCCCCCT---TCCCSEEECCS
T ss_pred ccccccCcCCEEECCCC-ccceeCchh---hccCCEEEcCC
Confidence 66677899999999987 477787544 34455554443
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=169.04 Aligned_cols=220 Identities=19% Similarity=0.163 Sum_probs=120.3
Q ss_pred cccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
++++|+|++|.+..+| ..++++.+|++|+|++| .+..++.+.+.++++|++|++.+|.+..++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------------- 128 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIP--------------- 128 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCC---------------
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeC---------------
Confidence 4555666666555554 45555666666666665 355555443555666666666655543211
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
...+..+++|+. |++.++.-. .+ ....+..+++|+.|+++++..+..+....
T Consensus 129 ~~~~~~l~~L~~--------------------------L~L~~N~i~-~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 180 (440)
T 3zyj_A 129 NGAFVYLSKLKE--------------------------LWLRNNPIE-SI-PSYAFNRIPSLRRLDLGELKRLSYISEGA 180 (440)
T ss_dssp TTTSCSCSSCCE--------------------------EECCSCCCC-EE-CTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred HhHhhccccCce--------------------------eeCCCCccc-cc-CHHHhhhCcccCEeCCCCCCCcceeCcch
Confidence 112344444444 444444322 11 11245566667777776666665544434
Q ss_pred ccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeec
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHL 550 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l 550 (626)
+. .+++|++|++++| .+..+|.+..+++|+.|+|++| .+..++.. .+..+++|++|++
T Consensus 181 ~~---------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-----------~~~~l~~L~~L~L 238 (440)
T 3zyj_A 181 FE---------GLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN-HLSAIRPG-----------SFQGLMHLQKLWM 238 (440)
T ss_dssp TT---------TCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS-CCCEECTT-----------TTTTCTTCCEEEC
T ss_pred hh---------cccccCeecCCCC-cCccccccCCCcccCEEECCCC-ccCccChh-----------hhccCccCCEEEC
Confidence 43 5667777777765 5556666666777777777666 34444321 3455667777777
Q ss_pred CCccccccccC-CCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEec
Q 006902 551 SYLPILKSIYW-KPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRG 599 (626)
Q Consensus 551 ~~~~~l~~i~~-~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~ 599 (626)
+++ .+..++. ....+++|++|++++| +|+.+|......++.|+.++.
T Consensus 239 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 239 IQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp TTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEEC
T ss_pred CCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEc
Confidence 664 3444332 3455677777777665 666666554444555555543
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=171.48 Aligned_cols=255 Identities=19% Similarity=0.181 Sum_probs=147.5
Q ss_pred Ccccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.++++|+|++|.+..+| ..+.++.+|++|+|++| .+..++...+.++++|++|++.+|.+..++..
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------ 98 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG------------ 98 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTT------------
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcc------------
Confidence 37899999999999884 68999999999999999 68887444499999999999999987643321
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeec
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKID 469 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~ 469 (626)
.+.++++|+.|++..+....+ .......+++|+.|++.++.-. .+ ....+..+++|+.|+++++.. ..+.+.
T Consensus 99 ---~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~ 170 (477)
T 2id5_A 99 ---VFTGLSNLTKLDISENKIVIL--LDYMFQDLYNLKSLEVGDNDLV-YI-SHRAFSGLNSLEQLTLEKCNL-TSIPTE 170 (477)
T ss_dssp ---SSTTCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEEECCTTCC-EE-CTTSSTTCTTCCEEEEESCCC-SSCCHH
T ss_pred ---cccCCCCCCEEECCCCccccC--ChhHccccccCCEEECCCCccc-ee-ChhhccCCCCCCEEECCCCcC-cccChh
Confidence 134455555555443322111 0111122344555555544322 11 112344444555555544321 111111
Q ss_pred cccc--------------cc-cccCccccCccCEEEEeCCCCCccccc-cccCCCccEEEEeccCccccccccCcccccc
Q 006902 470 YTEI--------------VR-KRREPFVFRSLHHVTIYSCTKLKDSTF-LVFAPNLKSLTLFDCGAMEEIISVGKIAETP 533 (626)
Q Consensus 470 ~~~~--------------~~-~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~ 533 (626)
.+.. .. .......+++|++|++++|..+..++. ....++|+.|+|++| .+..++..
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~------- 242 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYL------- 242 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHH-------
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHH-------
Confidence 1210 00 000012455666666666555555542 334446666666655 33333321
Q ss_pred ccCCCCCcCCccceeecCCccccccccC-CCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEecc
Q 006902 534 EMMGHISPFENLQMLHLSYLPILKSIYW-KPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGD 600 (626)
Q Consensus 534 ~~~~~~~~fp~L~~L~l~~~~~l~~i~~-~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~ 600 (626)
.+..+++|++|+++++. +..++. ....+++|++|++.+| ++..++......++.|+..+..
T Consensus 243 ----~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 243 ----AVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp ----HHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECC
T ss_pred ----HhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECC
Confidence 34678899999999864 555554 3567899999999987 5666644433445666666644
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=5.2e-17 Score=178.60 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=67.8
Q ss_pred cccCccCEEEEeCCCCCcccc-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccc
Q 006902 481 FVFRSLHHVTIYSCTKLKDST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSI 559 (626)
Q Consensus 481 ~~l~~L~~L~L~~c~~l~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i 559 (626)
..+++|+.|+|++|......| .++.+++|+.|+|++| .+..++. ....+|+|++|+++++ .+..+
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------------~~~~l~~L~~L~Ls~N-~l~~i 316 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL------------YGQPIPTLKVLDLSHN-HLLHV 316 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEEC------------SSSCCTTCCEEECCSS-CCCCC
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCc------------ccccCCCCcEEECCCC-CCCcc
Confidence 356777777777764333333 3677777777777776 3444443 4466889999999885 56677
Q ss_pred cCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceE
Q 006902 560 YWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVV 596 (626)
Q Consensus 560 ~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~ 596 (626)
|.....+++|++|++++| .+..+|......++.|.+
T Consensus 317 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~L~~L~l 352 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNLTL 352 (597)
T ss_dssp GGGHHHHTTCSEEECCSS-CCCCCCCCTTCCCSEEEC
T ss_pred CcccccCCCCCEEECCCC-CCCCcChhhcCCCCEEEe
Confidence 766777899999999987 577777654333444433
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=6.6e-18 Score=170.03 Aligned_cols=231 Identities=17% Similarity=0.139 Sum_probs=158.8
Q ss_pred ccccccccccccc---ccchHHhhhcccchhcccC-CCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCc
Q 006902 312 SLELLDISHTYIQ---ELPEELKLLVNLKCLNLRG-TGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGG 387 (626)
Q Consensus 312 ~Lr~L~L~~~~i~---~LP~~i~~L~~L~~L~l~~-~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 387 (626)
+++.|+|+++.+. .+|..++++.+|++|++++ +.....+|.. +.++++|++|++.+|.+.+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~-------------- 115 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSG-------------- 115 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEE--------------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCC--------------
Confidence 6888999999887 5899999999999999985 5333478887 8999999999999887642
Q ss_pred cchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccc-cccceeecccCCcceE
Q 006902 388 EVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLN-HLNELWIYRGFELEEL 466 (626)
Q Consensus 388 ~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~l~~l 466 (626)
..+..+.++++|++|+++.+...+ .++.....+++|+.|++.++.-...+ ...+..++ +|+.|+++++.... .
T Consensus 116 -~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~~L~~L~L~~N~l~~-~ 189 (313)
T 1ogq_A 116 -AIPDFLSQIKTLVTLDFSYNALSG--TLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTG-K 189 (313)
T ss_dssp -ECCGGGGGCTTCCEEECCSSEEES--CCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSSEEEE-E
T ss_pred -cCCHHHhCCCCCCEEeCCCCccCC--cCChHHhcCCCCCeEECcCCcccCcC--CHHHhhhhhcCcEEECcCCeeec-c
Confidence 455568888899988887654432 12223344678899998887543222 23566666 88889888764332 2
Q ss_pred eeccccccccccCccccCccCEEEEeCCCCCcccc-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCcc
Q 006902 467 KIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENL 545 (626)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L 545 (626)
.+..+. .++ |+.|++++|.....++ .++.+++|+.|+|+++.. ...+. .+..+++|
T Consensus 190 ~~~~~~---------~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~------------~~~~l~~L 246 (313)
T 1ogq_A 190 IPPTFA---------NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-AFDLG------------KVGLSKNL 246 (313)
T ss_dssp CCGGGG---------GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE-CCBGG------------GCCCCTTC
T ss_pred CChHHh---------CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce-eeecC------------cccccCCC
Confidence 344443 444 8888888864333344 377888888888887743 32222 23567888
Q ss_pred ceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCC
Q 006902 546 QMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLD 586 (626)
Q Consensus 546 ~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~ 586 (626)
++|+++++.--..+|.....+++|++|++++|+--..+|..
T Consensus 247 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred CEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 88888876544466666777888888888887433356664
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=1.7e-17 Score=166.96 Aligned_cols=231 Identities=16% Similarity=0.117 Sum_probs=176.8
Q ss_pred Cccccccccc-cccc-ccchHHhhhcccchhcccCCCCcc-ccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCc
Q 006902 311 SSLELLDISH-TYIQ-ELPEELKLLVNLKCLNLRGTGQLN-KIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGG 387 (626)
Q Consensus 311 ~~Lr~L~L~~-~~i~-~LP~~i~~L~~L~~L~l~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 387 (626)
.+|++|+|++ +.+. .+|..++++.+|++|++++| .+. .+|.. +.++++|++|++.+|.+.+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~-------------- 139 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYNALSG-------------- 139 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSSEEES--------------
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCCccCC--------------
Confidence 5899999995 7776 78999999999999999999 466 78887 9999999999999998642
Q ss_pred cchhHHhhccCCCceEEEEEechhhHHHHhhcccccc-ceeEEEEeccCCCccccccccccccccccceeecccCCcceE
Q 006902 388 EVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKS-CIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEEL 466 (626)
Q Consensus 388 ~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l 466 (626)
..+..+..+++|++|++..+...+ .++.....+. .|+.|++.++.-.... ...+..++ |+.|+++++... ..
T Consensus 140 -~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~~L~~L~L~~N~l~~~~--~~~~~~l~-L~~L~Ls~N~l~-~~ 212 (313)
T 1ogq_A 140 -TLPPSISSLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSMTISRNRLTGKI--PPTFANLN-LAFVDLSRNMLE-GD 212 (313)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCEE--ECCGGGGCCCTTCCEEECCSSEEEEEC--CGGGGGCC-CSEEECCSSEEE-EC
T ss_pred -cCChHHhcCCCCCeEECcCCcccC--cCCHHHhhhhhcCcEEECcCCeeeccC--ChHHhCCc-ccEEECcCCccc-Cc
Confidence 455678999999999987665431 1222222244 8999999987533222 12455555 999999986433 33
Q ss_pred eeccccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccc
Q 006902 467 KIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQ 546 (626)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~ 546 (626)
.+..+. .+++|+.|++++|.....++.+..+++|+.|+|++|.....++. .+..+++|+
T Consensus 213 ~~~~~~---------~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~------------~l~~l~~L~ 271 (313)
T 1ogq_A 213 ASVLFG---------SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ------------GLTQLKFLH 271 (313)
T ss_dssp CGGGCC---------TTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG------------GGGGCTTCC
T ss_pred CCHHHh---------cCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh------------HHhcCcCCC
Confidence 444454 78999999999986555666788999999999999854444444 567899999
Q ss_pred eeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCC
Q 006902 547 MLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLD 586 (626)
Q Consensus 547 ~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~ 586 (626)
+|+++++.--..+|.. ..+++|+.|++.+++.+...|..
T Consensus 272 ~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp EEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS
T ss_pred EEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCC
Confidence 9999997655577754 78999999999999988877653
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=2.5e-16 Score=159.94 Aligned_cols=227 Identities=17% Similarity=0.119 Sum_probs=166.0
Q ss_pred Ccccccccccccccccch-HHhhhcccchhcccCCCCcccc-chhhhcCCCcccEEEccCCCCCcccCCCCcccccCCcc
Q 006902 311 SSLELLDISHTYIQELPE-ELKLLVNLKCLNLRGTGQLNKI-PRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGE 388 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~l-P~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 388 (626)
..+++|+|++|.+..+|. .++++.+|++|++++| .+..+ |.. +.++++|++|++.+|.+..++ .
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~l~--~---------- 117 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKNQLKELP--E---------- 117 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSCCSBCC--S----------
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCCcCCccC--h----------
Confidence 478999999999998876 7899999999999999 57877 555 899999999999999876422 1
Q ss_pred chhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEee
Q 006902 389 VLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKI 468 (626)
Q Consensus 389 ~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~ 468 (626)
.+ .++|+.|.+..+....+.. .....+++|+.|++.++...........+..+++|+.|+++++.... + +
T Consensus 118 ----~~--~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l-~ 187 (330)
T 1xku_A 118 ----KM--PKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-I-P 187 (330)
T ss_dssp ----SC--CTTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C-C
T ss_pred ----hh--cccccEEECCCCcccccCH--hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-C-C
Confidence 11 1678888877654433211 11223678999999887653211123467788999999998765332 2 2
Q ss_pred ccccccccccCccccCccCEEEEeCCCCCcccc--ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccc
Q 006902 469 DYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQ 546 (626)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~ 546 (626)
.. .+++|++|++++|. +..++ .+..+++|+.|+|++|. +..++.. .+..+++|+
T Consensus 188 ~~-----------~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~ 243 (330)
T 1xku_A 188 QG-----------LPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDNG-----------SLANTPHLR 243 (330)
T ss_dssp SS-----------CCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEECTT-----------TGGGSTTCC
T ss_pred cc-----------ccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeChh-----------hccCCCCCC
Confidence 21 23789999999974 55443 48899999999999884 4444331 456789999
Q ss_pred eeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCC
Q 006902 547 MLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDS 587 (626)
Q Consensus 547 ~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 587 (626)
+|+++++ .+..++.....+++|++|++.+| +++.+|...
T Consensus 244 ~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~ 282 (330)
T 1xku_A 244 ELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSND 282 (330)
T ss_dssp EEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTS
T ss_pred EEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhh
Confidence 9999986 67788877888999999999987 688887643
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=1.8e-16 Score=162.25 Aligned_cols=247 Identities=15% Similarity=0.091 Sum_probs=152.9
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCC-Cccc-----ccC
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAP-EDSV-----LFG 385 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~-~~~~-----~~~ 385 (626)
+|++|++++|.+..+| .++.+.+|++|++++| .+..+|. +.++++|++|++.+|.......+. ...+ +.+
T Consensus 89 ~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 89 KLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE 164 (347)
T ss_dssp TCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS
T ss_pred cCCEEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecC
Confidence 4555555555555543 3455555555555555 3444444 445555555555544321100000 0000 111
Q ss_pred CccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcce
Q 006902 386 GGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEE 465 (626)
Q Consensus 386 ~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 465 (626)
........+..+++|+.|++..+....+.. ...+++|+.|++.++..... ..+..+++|++|++++|....
T Consensus 165 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~----~~~~~~~~L~~L~l~~n~l~~- 235 (347)
T 4fmz_A 165 SKVKDVTPIANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDI----TPVANMTRLNSLKIGNNKITD- 235 (347)
T ss_dssp SCCCCCGGGGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCC----GGGGGCTTCCEEECCSSCCCC-
T ss_pred CCcCCchhhccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCC----chhhcCCcCCEEEccCCccCC-
Confidence 111122237888999999887665444332 23467899999998754422 247788999999999875433
Q ss_pred EeeccccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCcc
Q 006902 466 LKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENL 545 (626)
Q Consensus 466 l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L 545 (626)
+ +. + ..+++|++|++++| .+..++.+..+++|+.|++++| .+..++ .+..+++|
T Consensus 236 ~-~~-~---------~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-------------~~~~l~~L 289 (347)
T 4fmz_A 236 L-SP-L---------ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDIS-------------VLNNLSQL 289 (347)
T ss_dssp C-GG-G---------TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG-------------GGGGCTTC
T ss_pred C-cc-h---------hcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCCh-------------hhcCCCCC
Confidence 2 21 3 37899999999997 6667788899999999999988 455442 34678999
Q ss_pred ceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEecc
Q 006902 546 QMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGD 600 (626)
Q Consensus 546 ~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~ 600 (626)
++|++++|.--...+.....+++|++|++++|+ ++.+|. ...++.|+..+..
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG--GGGCTTCSEESSS
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC--hhhhhccceeehh
Confidence 999999985444444445679999999999996 666654 2235566655543
No 17
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.67 E-value=1.6e-16 Score=190.41 Aligned_cols=142 Identities=22% Similarity=0.301 Sum_probs=112.5
Q ss_pred CCcccchHHHHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCC-CeEEEEEecCcc--CHHHHHHHH
Q 006902 157 EPTIVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNF-DCVIWVVVSKEL--RLEKIQEDI 231 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~--~~~~l~~~i 231 (626)
...||||++++++|.++|.. +..++|+|+||||+||||||+++|++...+..+| +.++|+++++.. +....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 46699999999999999964 5789999999999999999999999862235545 668899999854 344556777
Q ss_pred HHHhCCCCCc--cCCcCHHHHHHHHHHHhCCC--cEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHHhhh
Q 006902 232 GKKIGLFDDS--WKNKSFEEKAVDILRRLGEK--RFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVCGSM 306 (626)
Q Consensus 232 ~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~k--~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va~~~ 306 (626)
+..+...... ....+.+.+...++..+.++ |+||||||||+...|..+ .+||+||||||+..|+..+
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTTC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHHhh
Confidence 7777654321 13456788889999999887 999999999998777643 3589999999999998543
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=7.2e-17 Score=162.08 Aligned_cols=223 Identities=18% Similarity=0.174 Sum_probs=110.1
Q ss_pred cccccccccccccccchH-HhhhcccchhcccCCCCcccc---chhhhcCCCcccEEEccCCCCCcccCCCCcccccCCc
Q 006902 312 SLELLDISHTYIQELPEE-LKLLVNLKCLNLRGTGQLNKI---PRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGG 387 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~l---P~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 387 (626)
++++|+|+++.+..+|.. ++++.+|++|++++| .+..+ |.. +..+++|++|++++|.+.
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~--------------- 91 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFNGVI--------------- 91 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSCSEE---------------
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCCccc---------------
Confidence 566666666666666654 466666666666666 34443 444 556666666666666543
Q ss_pred cchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEe
Q 006902 388 EVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELK 467 (626)
Q Consensus 388 ~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~ 467 (626)
..+..+..+++|+.|++..+....+... .....+++|+.|++.++..... ....+..+++|++|+++++.......
T Consensus 92 -~l~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 92 -TMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp -EEEEEEETCTTCCEEECTTSEEESSTTT-TTTTTCTTCCEEECTTSCCEEC--STTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred -cChhhcCCCCCCCEEECCCCcccccccc-hhhhhccCCCEEECCCCcCCcc--chhhcccCcCCCEEECCCCccccccc
Confidence 1222355566666665543332221110 1112245566666655432211 11234455566666665543332123
Q ss_pred eccccccccccCccccCccCEEEEeCCCCCccc-c-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCcc
Q 006902 468 IDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDS-T-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENL 545 (626)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L 545 (626)
+.++. .+++|++|++++| .+..+ + .+..+++|+.|+|++|. +..++.. .+..+++|
T Consensus 168 ~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-----------~~~~l~~L 225 (306)
T 2z66_A 168 PDIFT---------ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTF-----------PYKCLNSL 225 (306)
T ss_dssp CSCCT---------TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSG-----------GGTTCTTC
T ss_pred hhHHh---------hCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChh-----------hccCcccC
Confidence 33333 4556666666664 23333 2 25556666666665552 3333221 23445666
Q ss_pred ceeecCCccccccccCCCCCCC-CccEEEecCC
Q 006902 546 QMLHLSYLPILKSIYWKPLPFT-HLKEMEVSGC 577 (626)
Q Consensus 546 ~~L~l~~~~~l~~i~~~~~~lp-~L~~L~i~~C 577 (626)
++|+++++.-....+.....+| +|++|++.++
T Consensus 226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 6666665433333333344443 5666666554
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=2.8e-16 Score=166.83 Aligned_cols=199 Identities=19% Similarity=0.158 Sum_probs=123.9
Q ss_pred Ccccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.+|++|+|++|.+..+| ..+..+.+|++|+|++| .+..+|.+.+.++++|++|++++|.+..++
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------- 163 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIP-------------- 163 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEEC--------------
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCCcceeC--------------
Confidence 58999999999999876 78899999999999999 689999877889999999999999875321
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhh-ccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEee
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLS-SNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKI 468 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~ 468 (626)
...+.++++|+.|++..++... .+.. ....+++|+.|++.++.-. .+..+..+++|+.|+++++. +..+.+
T Consensus 164 -~~~~~~l~~L~~L~l~~~~~l~--~i~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 235 (452)
T 3zyi_A 164 -SYAFNRVPSLMRLDLGELKKLE--YISEGAFEGLFNLKYLNLGMCNIK----DMPNLTPLVGLEELEMSGNH-FPEIRP 235 (452)
T ss_dssp -TTTTTTCTTCCEEECCCCTTCC--EECTTTTTTCTTCCEEECTTSCCS----SCCCCTTCTTCCEEECTTSC-CSEECG
T ss_pred -HhHHhcCCcccEEeCCCCCCcc--ccChhhccCCCCCCEEECCCCccc----ccccccccccccEEECcCCc-CcccCc
Confidence 2246778888888776422110 0000 1122455666666655432 12245555666666666543 223334
Q ss_pred ccccccccccCccccCccCEEEEeCCCCCcccc--ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccc
Q 006902 469 DYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQ 546 (626)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~ 546 (626)
..+. .+++|+.|+|++| .+..++ .+..+++|+.|+|++| .+..++.. .+..+++|+
T Consensus 236 ~~~~---------~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-----------~~~~l~~L~ 293 (452)
T 3zyi_A 236 GSFH---------GLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHD-----------LFTPLRYLV 293 (452)
T ss_dssp GGGT---------TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT-----------SSTTCTTCC
T ss_pred cccc---------CccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChH-----------HhccccCCC
Confidence 4443 5566666666664 233332 2556666666666655 34444331 234456666
Q ss_pred eeecCCcc
Q 006902 547 MLHLSYLP 554 (626)
Q Consensus 547 ~L~l~~~~ 554 (626)
+|+|++++
T Consensus 294 ~L~L~~Np 301 (452)
T 3zyi_A 294 ELHLHHNP 301 (452)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 66666543
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=162.89 Aligned_cols=255 Identities=19% Similarity=0.116 Sum_probs=173.9
Q ss_pred Ccccccccccccccccch-HHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHTYIQELPE-ELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.+|++|++++|.++.+|. .++++.+|++|++++| .+..++...+.++++|++|++.+|.+.. -
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------~ 115 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSN---------------L 115 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSS---------------C
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCc---------------C
Confidence 479999999999999886 7899999999999999 6888865558999999999999998653 1
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeec
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKID 469 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~ 469 (626)
....++++++|+.|++..+....+.. ......+++|+.|++.++.....+ ....+..+++|++|+++++.. ..+.+.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~ 192 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLEELEIDASDL-QSYEPK 192 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEETTC-CEECTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCcccccc-CHHHccCCCCCCEEECCCCCc-CccCHH
Confidence 22337889999999987665443211 012344789999999987533333 334677889999999998754 334455
Q ss_pred cccccccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccce
Q 006902 470 YTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQM 547 (626)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~ 547 (626)
.+. .+++|++|++++|. +..++. +..+++|+.|+++++. +..++..... .....+.|+.
T Consensus 193 ~l~---------~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~--------~~~~~~~l~~ 253 (353)
T 2z80_A 193 SLK---------SIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHFSELS--------TGETNSLIKK 253 (353)
T ss_dssp TTT---------TCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCCC--------------CCCCCCE
T ss_pred HHh---------ccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-cccccccccc--------cccccchhhc
Confidence 555 78999999999974 566663 5578999999999884 4443321110 1223455666
Q ss_pred eecCCccc----cccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEecccccc
Q 006902 548 LHLSYLPI----LKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQWW 604 (626)
Q Consensus 548 L~l~~~~~----l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~ 604 (626)
+.++++.- +..++.....+++|++|++++| +++.+|......+++|+..+....-|
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 66655421 1223333456778888888776 67777776544456666666444433
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=5e-16 Score=170.79 Aligned_cols=237 Identities=17% Similarity=0.171 Sum_probs=145.7
Q ss_pred Ccccccccccccccccch-HHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHTYIQELPE-ELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.+|++|+|++|.+..+|. .++.+.+|++|+|++| .+..+|...++++++|++|++.+|.+..++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-------------- 139 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLP-------------- 139 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------------
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCC--------------
Confidence 356666666666666553 6666666666666666 466666554566666666666666654211
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCC-------
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFE------- 462 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~------- 462 (626)
+..++++++|+.|+++.+....+. +.....+++|+.|++.++.-. .+ .+..+++|+.|.++++..
T Consensus 140 -~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~-~~----~~~~l~~L~~L~l~~n~l~~l~~~~ 211 (597)
T 3oja_B 140 -RGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLT-HV----DLSLIPSLFHANVSYNLLSTLAIPI 211 (597)
T ss_dssp -TTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECTTSCCS-BC----CGGGCTTCSEEECCSSCCSEEECCT
T ss_pred -HHHhccCCCCCEEEeeCCcCCCCC--hhhhhcCCcCcEEECcCCCCC-Cc----ChhhhhhhhhhhcccCccccccCCc
Confidence 111466777777777655433211 112233567777777766432 11 233344555555544321
Q ss_pred -cceEeeccccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCc
Q 006902 463 -LEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISP 541 (626)
Q Consensus 463 -l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~ 541 (626)
++.+......... .+ ....++|+.|+|++| .+..+++++.+++|+.|+|++|. +..+++. .++.
T Consensus 212 ~L~~L~ls~n~l~~-~~-~~~~~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~ 276 (597)
T 3oja_B 212 AVEELDASHNSINV-VR-GPVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYH-----------PFVK 276 (597)
T ss_dssp TCSEEECCSSCCCE-EE-CSCCSCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESG-----------GGTT
T ss_pred hhheeeccCCcccc-cc-cccCCCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc-cCCCCHH-----------HhcC
Confidence 1111111100000 00 012468999999997 56667889999999999999984 4444332 5678
Q ss_pred CCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCC
Q 006902 542 FENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDS 587 (626)
Q Consensus 542 fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 587 (626)
+++|++|+++++ .+..++.....+|+|++|++++| .+..+|...
T Consensus 277 l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~ 320 (597)
T 3oja_B 277 MQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQ 320 (597)
T ss_dssp CSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGH
T ss_pred ccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCccc
Confidence 999999999984 77888877888999999999998 667888654
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.66 E-value=9.6e-17 Score=177.58 Aligned_cols=233 Identities=10% Similarity=0.037 Sum_probs=132.5
Q ss_pred cccccchHHhhhcccchhcccCCCCccc------------------cchhhhc--CCCcccEEEccCCCCCcccCCCCcc
Q 006902 322 YIQELPEELKLLVNLKCLNLRGTGQLNK------------------IPRQLIS--KFSRLRVLRMLGTGPFSFDEAPEDS 381 (626)
Q Consensus 322 ~i~~LP~~i~~L~~L~~L~l~~~~~l~~------------------lP~~~i~--~L~~L~~L~l~~~~~~~~~~~~~~~ 381 (626)
++.++|..++++.+|++|++++| .+.. +|.+ ++ +|++|++|++.+|.+.+
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~-------- 263 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLT-------- 263 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCS--------
T ss_pred CCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCc--------
Confidence 34458888999999999999998 4777 8887 88 89999999999887643
Q ss_pred cccCCccchhHHhhccCCCceEEEEEec-hhh--HHHHhhc---cccccceeEEEEeccCCCccccccccccccccccce
Q 006902 382 VLFGGGEVLIQELLGLKYLEVLELTLGS-YHA--LQILLSS---NKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNEL 455 (626)
Q Consensus 382 ~~~~~~~~~~~~l~~L~~L~~L~i~~~~-~~~--~~~l~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L 455 (626)
..|..++++++|+.|++..+. ..+ +..-... ...+++|+.|++.++.-. .++....+..+++|+.|
T Consensus 264 -------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L 335 (636)
T 4eco_A 264 -------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGML 335 (636)
T ss_dssp -------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEE
T ss_pred -------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEE
Confidence 344567777777777776554 322 2211110 112367777777776544 33111146666777777
Q ss_pred eecccCCcceEeeccccc--------------cccccCccccCc-cCEEEEeCCCCCccccc-ccc--CCCccEEEEecc
Q 006902 456 WIYRGFELEELKIDYTEI--------------VRKRREPFVFRS-LHHVTIYSCTKLKDSTF-LVF--APNLKSLTLFDC 517 (626)
Q Consensus 456 ~l~~~~~l~~l~~~~~~~--------------~~~~~~~~~l~~-L~~L~L~~c~~l~~l~~-l~~--L~~L~~L~L~~~ 517 (626)
.++++.....+ + .+.. ...+.....+++ |++|++++|. +..+|. ++. +++|+.|++++|
T Consensus 336 ~L~~N~l~g~i-p-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 336 ECLYNQLEGKL-P-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp ECCSCCCEEEC-C-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSS
T ss_pred eCcCCcCccch-h-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCC
Confidence 77765433232 2 2220 000011123444 5555555442 223432 222 224555555544
Q ss_pred CccccccccCccccccccCCCCC-------cCCccceeecCCccccccccCCC-CCCCCccEEEecCCCCCCCCCCCCCc
Q 006902 518 GAMEEIISVGKIAETPEMMGHIS-------PFENLQMLHLSYLPILKSIYWKP-LPFTHLKEMEVSGCNQLEKHPLDSNS 589 (626)
Q Consensus 518 ~~l~~i~~~~~~~~~~~~~~~~~-------~fp~L~~L~l~~~~~l~~i~~~~-~~lp~L~~L~i~~C~~L~~lP~~~~~ 589 (626)
.....++. .+. .+++|++|+++++ .+..++... ..+++|++|++.+| ++..+|.....
T Consensus 413 ~l~~~~p~------------~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~ 478 (636)
T 4eco_A 413 EIGSVDGK------------NFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLK 478 (636)
T ss_dssp CTTTTTTC------------SSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSE
T ss_pred cCCCcchh------------hhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhc
Confidence 22221111 122 4568888888874 455666443 24788888888886 56678876544
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.66 E-value=4.1e-16 Score=162.25 Aligned_cols=232 Identities=17% Similarity=0.128 Sum_probs=145.9
Q ss_pred Ccccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.+|++|+|++|.+..+| ..++.+.+|++|++++| .+..+|.+++.++++|++|++.+|.+..+
T Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~--------------- 156 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERI--------------- 156 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBC---------------
T ss_pred CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCcc---------------
Confidence 47889999999888775 45788999999999998 58888887558899999999998876532
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeec
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKID 469 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~ 469 (626)
.+..+..+++|+.|.+..+....+ ....+++|+.|++.++.-. .+..+++|++|+++++.... + +.
T Consensus 157 ~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~l~~L~~L~l~~n~l~-------~~~~~~~L~~L~l~~n~l~~-~-~~ 222 (390)
T 3o6n_A 157 EDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYNLLS-------TLAIPIAVEELDASHNSINV-V-RG 222 (390)
T ss_dssp CTTTTSSCTTCCEEECCSSCCSBC-----CGGGCTTCSEEECCSSCCS-------EEECCSSCSEEECCSSCCCE-E-EC
T ss_pred ChhhccCCCCCCEEECCCCcCCcc-----ccccccccceeeccccccc-------ccCCCCcceEEECCCCeeee-c-cc
Confidence 223367778888887765544332 1223566777777655321 23344567777776644322 1 11
Q ss_pred cccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceee
Q 006902 470 YTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLH 549 (626)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~ 549 (626)
. .+++|+.|++++| .+..+++++.+++|+.|+|+++. +..++.. .+..+++|++|+
T Consensus 223 ~-----------~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~L~ 278 (390)
T 3o6n_A 223 P-----------VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYH-----------PFVKMQRLERLY 278 (390)
T ss_dssp C-----------CCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESG-----------GGTTCSSCCEEE
T ss_pred c-----------ccccccEEECCCC-CCcccHHHcCCCCccEEECCCCc-CCCcChh-----------HccccccCCEEE
Confidence 1 2356777777775 44555666777777777777663 3333221 345567777777
Q ss_pred cCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEec
Q 006902 550 LSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRG 599 (626)
Q Consensus 550 l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~ 599 (626)
++++ .+..++.....+|+|++|++++| +++.+|..... ++.|+..+.
T Consensus 279 L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-l~~L~~L~L 325 (390)
T 3o6n_A 279 ISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQ-FDRLENLYL 325 (390)
T ss_dssp CCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHH-HTTCSEEEC
T ss_pred CCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccc-cCcCCEEEC
Confidence 7763 55666655566777777777776 56666654322 344444443
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.66 E-value=1.5e-16 Score=175.66 Aligned_cols=262 Identities=17% Similarity=0.077 Sum_probs=118.6
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+|++|++++|.+..+|..++.+.+|++|++++| .+..++...+.++++|++|++.+|.... ..+ .
T Consensus 279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~-------------~ 343 (606)
T 3t6q_A 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRL-ELG-------------T 343 (606)
T ss_dssp TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCC-BCC-------------S
T ss_pred CCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCccc-ccc-------------h
Confidence 566666666666666666666666666666666 3555433236666666666666664331 011 1
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
..+..+++|+.|++..+..............+++|+.|++.++.-. .. ....+..+++|+.|+++++.......+.++
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SL-KTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EE-CTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cC-CHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 1134444455444443322211100111122344444444443221 11 111333344444444443322111001111
Q ss_pred cc--------------ccc-ccCccccCccCEEEEeCCCCCcc-c---cccccCCCccEEEEeccCccccccccCccccc
Q 006902 472 EI--------------VRK-RREPFVFRSLHHVTIYSCTKLKD-S---TFLVFAPNLKSLTLFDCGAMEEIISVGKIAET 532 (626)
Q Consensus 472 ~~--------------~~~-~~~~~~l~~L~~L~L~~c~~l~~-l---~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~ 532 (626)
.. ... +.....+++|++|++++|..... + ..++.+++|+.|+|++|. +..++.
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------- 493 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ------- 493 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECT-------
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccCh-------
Confidence 10 000 00011455555555555432221 1 124555555555555552 332322
Q ss_pred cccCCCCCcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEecccccc
Q 006902 533 PEMMGHISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQWW 604 (626)
Q Consensus 533 ~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~ 604 (626)
..+..+++|++|+++++.--...+.....+++| +|++.+| ++..+|......++.|+.++.....|
T Consensus 494 ----~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 494 ----HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred ----hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 145667777777777764434444455667777 7777776 45555543222344555555433333
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=164.23 Aligned_cols=199 Identities=19% Similarity=0.188 Sum_probs=129.8
Q ss_pred Ccccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.+|++|+|++|.+..++ ..+..+.+|++|+|++| .+..+|...+.++++|++|++.+|.+..+
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--------------- 151 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESI--------------- 151 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEE---------------
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCccccc---------------
Confidence 58999999999999886 67899999999999999 68999987689999999999999987532
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHh-hccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEee
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILL-SSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKI 468 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~ 468 (626)
....+.++++|+.|.+..+.... .+. .....+++|+.|++.++.-. .+..+..+++|+.|+++++. +..+.+
T Consensus 152 ~~~~~~~l~~L~~L~l~~~~~l~--~i~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 224 (440)
T 3zyj_A 152 PSYAFNRIPSLRRLDLGELKRLS--YISEGAFEGLSNLRYLNLAMCNLR----EIPNLTPLIKLDELDLSGNH-LSAIRP 224 (440)
T ss_dssp CTTTTTTCTTCCEEECCCCTTCC--EECTTTTTTCSSCCEEECTTSCCS----SCCCCTTCSSCCEEECTTSC-CCEECT
T ss_pred CHHHhhhCcccCEeCCCCCCCcc--eeCcchhhcccccCeecCCCCcCc----cccccCCCcccCEEECCCCc-cCccCh
Confidence 12246778888888776432110 000 01223556777777666433 22345566667777776653 333334
Q ss_pred ccccccccccCccccCccCEEEEeCCCCCcccc--ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccc
Q 006902 469 DYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQ 546 (626)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~ 546 (626)
..+. .+++|+.|+|++| .+..++ .+..+++|+.|+|++| .+..++.. .+..+++|+
T Consensus 225 ~~~~---------~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-----------~~~~l~~L~ 282 (440)
T 3zyj_A 225 GSFQ---------GLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHD-----------LFTPLHHLE 282 (440)
T ss_dssp TTTT---------TCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTT-----------TTSSCTTCC
T ss_pred hhhc---------cCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChh-----------HhccccCCC
Confidence 4443 5667777777765 344433 2566677777777665 34444331 234566777
Q ss_pred eeecCCcc
Q 006902 547 MLHLSYLP 554 (626)
Q Consensus 547 ~L~l~~~~ 554 (626)
+|+|++++
T Consensus 283 ~L~L~~Np 290 (440)
T 3zyj_A 283 RIHLHHNP 290 (440)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 77766544
No 26
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=2.5e-16 Score=158.81 Aligned_cols=215 Identities=15% Similarity=0.073 Sum_probs=143.8
Q ss_pred cccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
+|++|+|++|.+..+| ..++.+.+|++|++++| .+..++. +..+++|++|++++|.+.+
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~Ls~n~l~~----------------- 94 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQE----------------- 94 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTCTTCCEEECCSSEEEE-----------------
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhcCCCCEEECcCCcccc-----------------
Confidence 6888888888888775 67888888888888888 5776665 7888888888888886542
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
+..+++|+.|.+..+....+. ...+++|+.|++.++.-.. . ....+..+++|+.|+++++... .+.+..
T Consensus 95 ---l~~~~~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~N~l~~-~-~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~ 163 (317)
T 3o53_A 95 ---LLVGPSIETLHAANNNISRVS-----CSRGQGKKNIYLANNKITM-L-RDLDEGCRSRVQYLDLKLNEID-TVNFAE 163 (317)
T ss_dssp ---EEECTTCCEEECCSSCCSEEE-----ECCCSSCEEEECCSSCCCS-G-GGBCTGGGSSEEEEECTTSCCC-EEEGGG
T ss_pred ---ccCCCCcCEEECCCCccCCcC-----ccccCCCCEEECCCCCCCC-c-cchhhhccCCCCEEECCCCCCC-cccHHH
Confidence 234467777776654433211 1124568888887765432 2 1224566778888888775433 333333
Q ss_pred ccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeec
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHL 550 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l 550 (626)
+. ..+++|++|++++| .+..++....+++|+.|+|++| .+..++. .+..+++|++|++
T Consensus 164 ~~--------~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------------~~~~l~~L~~L~L 221 (317)
T 3o53_A 164 LA--------ASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSN-KLAFMGP------------EFQSAAGVTWISL 221 (317)
T ss_dssp GG--------GGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSS-CCCEECG------------GGGGGTTCSEEEC
T ss_pred Hh--------hccCcCCEEECCCC-cCcccccccccccCCEEECCCC-cCCcchh------------hhcccCcccEEEC
Confidence 32 15678888888875 4556666666788888888776 4555544 3456778888888
Q ss_pred CCccccccccCCCCCCCCccEEEecCCCCC
Q 006902 551 SYLPILKSIYWKPLPFTHLKEMEVSGCNQL 580 (626)
Q Consensus 551 ~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L 580 (626)
+++ .+..++.....+++|+.|++.+++--
T Consensus 222 ~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 222 RNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 774 56677766677788888888776543
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=2.2e-15 Score=160.58 Aligned_cols=236 Identities=19% Similarity=0.193 Sum_probs=140.7
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+|++|+|++|.+..+|. ++.+.+|++|++++| .+..+|. +.++++|++|++.+|.+..+
T Consensus 69 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~~----------------- 127 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDI----------------- 127 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------
T ss_pred CCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCCCC-----------------
Confidence 78888999888888887 888888999999888 5777776 78888899999888876531
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
..+.++++|+.|++..+....+.. ...+++|+.|.+.+... ....+..+++|+.|+++++.. ..+ ..+
T Consensus 128 ~~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~~~~-----~~~~~~~l~~L~~L~l~~n~l-~~~--~~l 195 (466)
T 1o6v_A 128 DPLKNLTNLNRLELSSNTISDISA----LSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNKV-SDI--SVL 195 (466)
T ss_dssp GGGTTCTTCSEEEEEEEEECCCGG----GTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSCC-CCC--GGG
T ss_pred hHHcCCCCCCEEECCCCccCCChh----hccCCcccEeecCCccc-----CchhhccCCCCCEEECcCCcC-CCC--hhh
Confidence 116677777777776655443322 12244555555542111 111244445555555544321 110 011
Q ss_pred cc-------------cccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCC
Q 006902 472 EI-------------VRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGH 538 (626)
Q Consensus 472 ~~-------------~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 538 (626)
.. ....++...+++|+.|++++| .+..++.+..+++|+.|++++|. +..++ .
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~-------------~ 260 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQ-ISNLA-------------P 260 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCCCG-------------G
T ss_pred ccCCCCCEEEecCCcccccccccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCc-cccch-------------h
Confidence 10 000011224566666666665 34555566666777777776663 22222 2
Q ss_pred CCcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEecc
Q 006902 539 ISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGD 600 (626)
Q Consensus 539 ~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~ 600 (626)
+..+++|++|+++++ .+..++. ...+++|++|++.+| +++.+|. ...++.|+..+..
T Consensus 261 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 261 LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNEN-QLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCSCCGG--GGGCTTCSEEECC
T ss_pred hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCC-cccCchh--hcCCCCCCEEECc
Confidence 456788888888875 4444443 567888899998887 5666654 1234555555544
No 28
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=171.40 Aligned_cols=140 Identities=21% Similarity=0.319 Sum_probs=106.7
Q ss_pred CCcccchHHHHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHHhhc-cCCC-CeEEEEEecCccCHHHHHHHH-
Q 006902 157 EPTIVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKFLEN-QNNF-DCVIWVVVSKELRLEKIQEDI- 231 (626)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~F-~~~~wv~~s~~~~~~~l~~~i- 231 (626)
...+|||+.++++|.++|.. +..++|+|+||||+||||||+.+|++. ++ ..+| +.++|++++.. +...+...+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 36789999999999999984 468899999999999999999999886 55 6788 57999999876 344444443
Q ss_pred --HHHhCCCC--CccCCcCHHHHHHHHHHHhCC--CcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHHhh
Q 006902 232 --GKKIGLFD--DSWKNKSFEEKAVDILRRLGE--KRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVCGS 305 (626)
Q Consensus 232 --~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va~~ 305 (626)
+..++... ......+.+.....+...+.+ +++||||||+|+...+.. + ..+++||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l----~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F----DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T----CSSCEEEEEESCGGGGTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h----cCCCeEEEECCCcHHHHh
Confidence 34554211 112345667777888888865 799999999998765543 2 358899999999998875
Q ss_pred h
Q 006902 306 M 306 (626)
Q Consensus 306 ~ 306 (626)
+
T Consensus 273 ~ 273 (591)
T 1z6t_A 273 V 273 (591)
T ss_dssp C
T ss_pred c
Confidence 4
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.64 E-value=2e-16 Score=175.06 Aligned_cols=247 Identities=13% Similarity=0.056 Sum_probs=163.8
Q ss_pred Ccccccccccccccc------------------cchHHh--hhcccchhcccCCCCccccchhhhcCCCcccEEEccCCC
Q 006902 311 SSLELLDISHTYIQE------------------LPEELK--LLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTG 370 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~------------------LP~~i~--~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 370 (626)
.+|++|+|++|.+.+ +|..++ ++.+|++|++++|.....+|.. ++++++|++|++.+|.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNR 284 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCC
Confidence 379999999999988 999999 9999999999999666788987 9999999999999997
Q ss_pred -CCcccCCCCcccccCCccchhHHhhcc------CCCceEEEEEechhhHHHHhh--ccccccceeEEEEeccCCCcccc
Q 006902 371 -PFSFDEAPEDSVLFGGGEVLIQELLGL------KYLEVLELTLGSYHALQILLS--SNKLKSCIRSLFLWLAGDATSIV 441 (626)
Q Consensus 371 -~~~~~~~~~~~~~~~~~~~~~~~l~~L------~~L~~L~i~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~ 441 (626)
+.+ ...|..++.| ++|+.|++..+....+ +. ....+++|+.|++.++.-...++
T Consensus 285 ~l~~--------------~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i---p~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 285 GISG--------------EQLKDDWQALADAPVGEKIQIIYIGYNNLKTF---PVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TSCH--------------HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC---CCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred CCcc--------------ccchHHHHhhhccccCCCCCEEECCCCcCCcc---CchhhhccCCCCCEEeCcCCcCccchh
Confidence 531 1344555554 6666666655443322 21 22234556666665554321221
Q ss_pred cccccccccc------------------------ccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCC
Q 006902 442 DATAFADLNH------------------------LNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKL 497 (626)
Q Consensus 442 ~~~~l~~~~~------------------------L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l 497 (626)
.+..+++ |+.|+++++... . .|.++. ...+++|++|++++|...
T Consensus 348 ---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~-lp~~~~-------~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 348 ---AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-Y-IPNIFD-------AKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp ---CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-S-CCSCCC-------TTCSSCEEEEECCSSCTT
T ss_pred ---hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-c-cchhhh-------hcccCccCEEECcCCcCC
Confidence 3334444 444544443322 2 122222 012458999999998665
Q ss_pred cccc-ccc-------cCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccCCCCC----
Q 006902 498 KDST-FLV-------FAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYWKPLP---- 565 (626)
Q Consensus 498 ~~l~-~l~-------~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~~~~---- 565 (626)
..+| .++ .+++|+.|+|++| .+..++.. ....+++|++|+++++ .+..++.....
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~-----------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKE-----------LFSTGSPLSSINLMGN-MLTEIPKNSLKDENE 482 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTH-----------HHHTTCCCSEEECCSS-CCSBCCSSSSEETTE
T ss_pred CcchhhhcccccccccCCCCCEEECcCC-ccCcCCHH-----------HHccCCCCCEEECCCC-CCCCcCHHHhccccc
Confidence 5555 355 7889999999998 45555542 2245899999999985 56677765333
Q ss_pred ----CCCccEEEecCCCCCCCCCCCCC-cCcCcceEEeccc
Q 006902 566 ----FTHLKEMEVSGCNQLEKHPLDSN-SAKERKVVIRGDT 601 (626)
Q Consensus 566 ----lp~L~~L~i~~C~~L~~lP~~~~-~~l~~l~~~~~~~ 601 (626)
+++|++|++++| +++.+|.... ..++.|+..+...
T Consensus 483 ~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp ECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCS
T ss_pred cccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCC
Confidence 229999999997 6788997664 2466676666544
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=8.8e-16 Score=173.29 Aligned_cols=270 Identities=11% Similarity=0.067 Sum_probs=158.7
Q ss_pred Cccccccccccc-ccc--cchHHhhhc-------ccchhcccCCCCccccch--hhhcCCCcccEEEccCCCCCcccCCC
Q 006902 311 SSLELLDISHTY-IQE--LPEELKLLV-------NLKCLNLRGTGQLNKIPR--QLISKFSRLRVLRMLGTGPFSFDEAP 378 (626)
Q Consensus 311 ~~Lr~L~L~~~~-i~~--LP~~i~~L~-------~L~~L~l~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~~~~~~~ 378 (626)
.+|++|+|++|. +.. +|..++++. +|++|++++| .+..+|. . ++++++|++|++.+|.+..++.-.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~-l~~L~~L~~L~Ls~N~l~~lp~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASAS-LQKMVKLGLLDCVHNKVRHLEAFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHH-HTTCTTCCEEECTTSCCCBCCCCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhh-hhcCCCCCEEECCCCCcccchhhc
Confidence 478888888886 764 788888777 8888888888 4678887 6 788888888888888766433000
Q ss_pred Cccc-----ccCC-ccchhHHhhccCC-CceEEEEEechhhHHHHhhccccc--cceeEEEEeccCCCccccccc-c---
Q 006902 379 EDSV-----LFGG-GEVLIQELLGLKY-LEVLELTLGSYHALQILLSSNKLK--SCIRSLFLWLAGDATSIVDAT-A--- 445 (626)
Q Consensus 379 ~~~~-----~~~~-~~~~~~~l~~L~~-L~~L~i~~~~~~~~~~l~~~~~~~--~~L~~L~l~~~~~~~~~~~~~-~--- 445 (626)
...+ +.++ -...+..+.++++ |+.|.+..+....+ +...... .+|+.|++.++.-...++.+. .
T Consensus 593 ~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~l---p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI---PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp TTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSC---CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred CCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcC---chhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 1111 1111 1134556777777 88887776554322 2222222 236666666554322111110 1
Q ss_pred -----------------------ccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccc
Q 006902 446 -----------------------FADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF 502 (626)
Q Consensus 446 -----------------------l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~ 502 (626)
+..+++|+.|+++++... .++...+. ...+....+++|+.|+|++| .+..+|.
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~--~~~~~l~nl~~L~~L~Ls~N-~L~~lp~ 745 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLK--PKDGNYKNTYLLTTIDLRFN-KLTSLSD 745 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS--CTTSCCTTGGGCCEEECCSS-CCCCCCG
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhc--cccccccccCCccEEECCCC-CCccchH
Confidence 112334444444433211 21111111 00001123348888888887 4556664
Q ss_pred -cc--cCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCC------ccccccccCCCCCCCCccEEE
Q 006902 503 -LV--FAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSY------LPILKSIYWKPLPFTHLKEME 573 (626)
Q Consensus 503 -l~--~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~------~~~l~~i~~~~~~lp~L~~L~ 573 (626)
+. .+++|+.|+|++| .+..++. .+..+++|+.|+|++ +.-...+|.....+++|++|+
T Consensus 746 ~l~~~~l~~L~~L~Ls~N-~L~~lp~------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYN-CFSSFPT------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp GGSTTTCTTCCEEECCSS-CCSSCCC------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred HhhhccCCCcCEEEeCCC-CCCccch------------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence 54 7888888888877 3444543 456789999999976 434556777778899999999
Q ss_pred ecCCCCCCCCCCCCCcCcCcceEEecccccccc
Q 006902 574 VSGCNQLEKHPLDSNSAKERKVVIRGDTQWWNR 606 (626)
Q Consensus 574 i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~~~ 606 (626)
+++|. +..+|..... .|+..+....-+..
T Consensus 813 Ls~N~-L~~Ip~~l~~---~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 813 IGSND-IRKVDEKLTP---QLYILDIADNPNIS 841 (876)
T ss_dssp CCSSC-CCBCCSCCCS---SSCEEECCSCTTCE
T ss_pred CCCCC-CCccCHhhcC---CCCEEECCCCCCCc
Confidence 99984 5889987654 44555544443433
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.64 E-value=2e-15 Score=160.95 Aligned_cols=265 Identities=17% Similarity=0.175 Sum_probs=123.5
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCccc-----ccCC
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSV-----LFGG 386 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~ 386 (626)
+|++|++++|.+..+|. ++++.+|++|++++| .+..+|. +.++++|++|++.+|.+..++......+ +.+
T Consensus 91 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~- 165 (466)
T 1o6v_A 91 KLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN- 165 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-
T ss_pred cCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCC-
Confidence 67777777777777665 777777777777777 4666665 6777777777777665443211000000 000
Q ss_pred ccchhHHhhccCCCceEEEEEechhhHHHHhh------------------ccccccceeEEEEeccCCCccccccccccc
Q 006902 387 GEVLIQELLGLKYLEVLELTLGSYHALQILLS------------------SNKLKSCIRSLFLWLAGDATSIVDATAFAD 448 (626)
Q Consensus 387 ~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 448 (626)
.......+.++++|+.|++..+....+..+.. ....+++|+.|++.++.-. ....+..
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~----~~~~l~~ 241 (466)
T 1o6v_A 166 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK----DIGTLAS 241 (466)
T ss_dssp SCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC----CCGGGGG
T ss_pred cccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc----cchhhhc
Confidence 00011124444444444444332222111100 0111334444444443221 1123444
Q ss_pred cccccceeecccCCcc-----------eEeeccccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEecc
Q 006902 449 LNHLNELWIYRGFELE-----------ELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDC 517 (626)
Q Consensus 449 ~~~L~~L~l~~~~~l~-----------~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~ 517 (626)
+++|+.|++++|.... .+....... ...++...+++|+.|++++| .+..+++++.+++|+.|+|++|
T Consensus 242 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS
T ss_pred CCCCCEEECCCCccccchhhhcCCCCCEEECCCCcc-CccccccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC
Confidence 4555555555432211 110000000 00111224455555555554 3344444555555555555555
Q ss_pred CccccccccCccccccccCCCCCcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEE
Q 006902 518 GAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVI 597 (626)
Q Consensus 518 ~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~ 597 (626)
. +..++ .+..+++|++|++++| .+..++ ....+++|+.|++.+|+ +..++. ...++.|+..
T Consensus 320 ~-l~~~~-------------~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 320 N-ISDIS-------------PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ-ISDLTP--LANLTRITQL 380 (466)
T ss_dssp C-CSCCG-------------GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CCBCGG--GTTCTTCCEE
T ss_pred c-CCCch-------------hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc-cCccch--hhcCCCCCEE
Confidence 2 22221 1345677777777765 444442 34567777777777774 333332 1234555555
Q ss_pred ecccccccc
Q 006902 598 RGDTQWWNR 606 (626)
Q Consensus 598 ~~~~~~~~~ 606 (626)
+....-|.+
T Consensus 381 ~l~~n~~~~ 389 (466)
T 1o6v_A 381 GLNDQAWTN 389 (466)
T ss_dssp ECCCEEEEC
T ss_pred eccCCcccC
Confidence 554444444
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=1.1e-15 Score=155.16 Aligned_cols=245 Identities=15% Similarity=0.174 Sum_probs=182.1
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
++++++++++.+..+|..+. .+|++|++++| .+..+|...+.++++|++|++.+|.+.+ ..+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~---------------~~~ 93 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISK---------------ISP 93 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCC---------------BCT
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCe---------------eCH
Confidence 68899999999999997765 58999999999 6899987559999999999999998753 234
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcc-eEeecc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELE-ELKIDY 470 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~-~l~~~~ 470 (626)
..+.++++|+.|++..+.... ++.. ..++|+.|++.++.-. .. ....+..+++|+.|+++++.... ...+..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~---l~~~--~~~~L~~L~l~~n~l~-~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 166 (330)
T 1xku_A 94 GAFAPLVKLERLYLSKNQLKE---LPEK--MPKTLQELRVHENEIT-KV-RKSVFNGLNQMIVVELGTNPLKSSGIENGA 166 (330)
T ss_dssp TTTTTCTTCCEEECCSSCCSB---CCSS--CCTTCCEEECCSSCCC-BB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred HHhcCCCCCCEEECCCCcCCc---cChh--hcccccEEECCCCccc-cc-CHhHhcCCccccEEECCCCcCCccCcChhh
Confidence 568899999999988665432 2221 2378999999987644 22 22357788999999999865432 122333
Q ss_pred ccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeec
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHL 550 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l 550 (626)
+. .+++|++|++++| .+..+|. ...++|+.|++++|. +..++.. .+..+++|++|++
T Consensus 167 ~~---------~l~~L~~L~l~~n-~l~~l~~-~~~~~L~~L~l~~n~-l~~~~~~-----------~~~~l~~L~~L~L 223 (330)
T 1xku_A 167 FQ---------GMKKLSYIRIADT-NITTIPQ-GLPPSLTELHLDGNK-ITKVDAA-----------SLKGLNNLAKLGL 223 (330)
T ss_dssp GG---------GCTTCCEEECCSS-CCCSCCS-SCCTTCSEEECTTSC-CCEECTG-----------GGTTCTTCCEEEC
T ss_pred cc---------CCCCcCEEECCCC-ccccCCc-cccccCCEEECCCCc-CCccCHH-----------HhcCCCCCCEEEC
Confidence 33 7899999999997 5566663 223899999999884 5545332 4577899999999
Q ss_pred CCccccccccC-CCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEeccccccccc
Q 006902 551 SYLPILKSIYW-KPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQWWNRL 607 (626)
Q Consensus 551 ~~~~~l~~i~~-~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~~~l 607 (626)
+++ .+..++. ....+++|++|++++| ++..+|..... ++.|+..+....-+..+
T Consensus 224 s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~-l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 224 SFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLAD-HKYIQVVYLHNNNISAI 278 (330)
T ss_dssp CSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTT-CSSCCEEECCSSCCCCC
T ss_pred CCC-cCceeChhhccCCCCCCEEECCCC-cCccCChhhcc-CCCcCEEECCCCcCCcc
Confidence 986 4555543 4678999999999998 78899987654 66777777655444443
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=5.6e-16 Score=165.59 Aligned_cols=215 Identities=15% Similarity=0.062 Sum_probs=162.5
Q ss_pred cccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
+|++|+|++|.+..+| ..++.+.+|++|+|++| .+..+++ +..+++|++|++++|.+.+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~----------------- 94 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQE----------------- 94 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEE-----------------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCC-----------------
Confidence 7999999999998875 68999999999999999 5777776 8999999999999987542
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
+...++|+.|+++.+....+ .. ..+++|+.|++.++.-.... ...+..+++|+.|+++++... ...+..
T Consensus 95 ---l~~~~~L~~L~L~~N~l~~~---~~--~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~-~~~~~~ 163 (487)
T 3oja_A 95 ---LLVGPSIETLHAANNNISRV---SC--SRGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEID-TVNFAE 163 (487)
T ss_dssp ---EEECTTCCEEECCSSCCCCE---EE--CCCSSCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSCCC-EEEGGG
T ss_pred ---CCCCCCcCEEECcCCcCCCC---Cc--cccCCCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCCCC-CcChHH
Confidence 23447888888776554332 11 12468999999887654222 235677889999999876544 334444
Q ss_pred ccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeec
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHL 550 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l 550 (626)
+. ..+++|++|+|++| .+..++....+++|+.|+|++| .+..++. .+..+++|++|++
T Consensus 164 l~--------~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------------~~~~l~~L~~L~L 221 (487)
T 3oja_A 164 LA--------ASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSN-KLAFMGP------------EFQSAAGVTWISL 221 (487)
T ss_dssp GG--------GGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSS-CCCEECG------------GGGGGTTCSEEEC
T ss_pred Hh--------hhCCcccEEecCCC-ccccccccccCCCCCEEECCCC-CCCCCCH------------hHcCCCCccEEEe
Confidence 32 25789999999996 5667777778999999999988 4555655 3567899999999
Q ss_pred CCccccccccCCCCCCCCccEEEecCCCCC
Q 006902 551 SYLPILKSIYWKPLPFTHLKEMEVSGCNQL 580 (626)
Q Consensus 551 ~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L 580 (626)
+++ .+..+|.....+++|+.|++.+|+-.
T Consensus 222 s~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 222 RNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 984 67778877788899999999987654
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=2.1e-15 Score=159.65 Aligned_cols=159 Identities=15% Similarity=0.091 Sum_probs=94.9
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+|++|+++++.+.++| .++.+.+|++|++++| .+..+| ++.+++|++|++++|.+.++
T Consensus 43 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~----------------- 100 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNL----------------- 100 (457)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCC-----------------
T ss_pred CCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCcee-----------------
Confidence 6778888888887777 6778888888888888 577775 67788888888888776531
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
.++++++|+.|++..+....+. ...+++|+.|++.++.-. .+ .+..+++|+.|+++++..+..+ .+
T Consensus 101 -~~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~-~l----~l~~l~~L~~L~l~~n~~~~~~---~~ 166 (457)
T 3bz5_A 101 -DVTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLT-EI----DVSHNTQLTELDCHLNKKITKL---DV 166 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCS-CC----CCTTCTTCCEEECTTCSCCCCC---CC
T ss_pred -ecCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccc-ee----ccccCCcCCEEECCCCCccccc---cc
Confidence 1556666777766655443321 233556666666665432 12 2455566666666665444322 11
Q ss_pred cccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEecc
Q 006902 472 EIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDC 517 (626)
Q Consensus 472 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~ 517 (626)
. .+++|++|++++| .++.+| ++.+++|+.|++++|
T Consensus 167 ~---------~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 167 T---------PQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTN 201 (457)
T ss_dssp T---------TCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSS
T ss_pred c---------cCCcCCEEECCCC-ccceec-cccCCCCCEEECcCC
Confidence 1 3455555555554 333343 445555555555544
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.63 E-value=6.9e-16 Score=174.73 Aligned_cols=257 Identities=16% Similarity=0.024 Sum_probs=165.9
Q ss_pred ccccccccccccc-ccchHHhhhcccchhcccCCCCcc-ccchhhhcCCCcccEEEccCCCCCcccCCCCccc-------
Q 006902 312 SLELLDISHTYIQ-ELPEELKLLVNLKCLNLRGTGQLN-KIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSV------- 382 (626)
Q Consensus 312 ~Lr~L~L~~~~i~-~LP~~i~~L~~L~~L~l~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~------- 382 (626)
.|++|++++|.+. .+|..++++.+|++|++++|. +. .+|.. +.++++|++|++.+|.+.+. .|..+..
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSS-LGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETL 471 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EESCCCGG-GGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEE
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCc-ccCcccHH-HhcCCCCCEEECCCCcccCc-CCHHHcCCCCceEE
Confidence 5777777777766 567777777777777777773 44 56665 77777777777777765431 1111100
Q ss_pred -ccCC--ccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecc
Q 006902 383 -LFGG--GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYR 459 (626)
Q Consensus 383 -~~~~--~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 459 (626)
+.+. ....+..+.++++|+.|++..+...+ .++.....+++|+.|++.++.-...+ ...+..+++|+.|++++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNT 547 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCS
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCC--cCChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCC
Confidence 1111 12345567777777777776554332 12222334567788888777543222 23566778888888877
Q ss_pred cCCcceEeeccccc------------------------------------------------------------cccccC
Q 006902 460 GFELEELKIDYTEI------------------------------------------------------------VRKRRE 479 (626)
Q Consensus 460 ~~~l~~l~~~~~~~------------------------------------------------------------~~~~~~ 479 (626)
+.....++..+... +..++.
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 65443322111110 001122
Q ss_pred ccccCccCEEEEeCCCCCcccc-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcccccc
Q 006902 480 PFVFRSLHHVTIYSCTKLKDST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKS 558 (626)
Q Consensus 480 ~~~l~~L~~L~L~~c~~l~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~ 558 (626)
...+++|+.|+|++|.....+| .++++++|+.|+|+++.....+|. .++.+++|++|+++++.--..
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~------------~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------------EVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCEEC
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh------------HHhCCCCCCEEECCCCcccCc
Confidence 3456789999999986666777 489999999999999865556655 567899999999999776668
Q ss_pred ccCCCCCCCCccEEEecCCCCCCCCCCCC
Q 006902 559 IYWKPLPFTHLKEMEVSGCNQLEKHPLDS 587 (626)
Q Consensus 559 i~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 587 (626)
+|.....+++|++|++++|+---.+|.+.
T Consensus 696 ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 696 IPQAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp CCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred CChHHhCCCCCCEEECcCCcccccCCCch
Confidence 88888899999999999985555577643
No 36
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.63 E-value=2.1e-15 Score=125.39 Aligned_cols=83 Identities=10% Similarity=0.100 Sum_probs=74.5
Q ss_pred eeechhhHhhHHHHHhhhhhHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHH
Q 006902 7 ITCDGALFNRCLDCFLGKAAYIRNLQDNLVALETELGRLIAAKNDVMMRVVNAERQQ-MRRLDGVQVWVSRVDSVKTGAD 85 (626)
Q Consensus 7 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~Wl~~l~~~~~d~e 85 (626)
|+++.+ ++||.+++.+|+.++.++++++++|+++|++|++||.| |+.+. ...+++++.|+++||+++||+|
T Consensus 1 a~v~~l-l~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 1 AAISNL-IPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp CTTCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence 456777 99999999999999999999999999999999999999 77662 2236999999999999999999
Q ss_pred HHHhhhhhhhcc
Q 006902 86 ELITDGSEEIGK 97 (626)
Q Consensus 86 d~ld~~~~~~~~ 97 (626)
|++|+|.++...
T Consensus 73 D~iD~f~~~~~~ 84 (115)
T 3qfl_A 73 DVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999998753
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=9.9e-16 Score=153.73 Aligned_cols=248 Identities=15% Similarity=0.108 Sum_probs=176.5
Q ss_pred cccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHH
Q 006902 314 ELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQE 393 (626)
Q Consensus 314 r~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (626)
+.+++++++++.+|..+. .+|++|++++| .+..+|.+++.++++|++|++.+|.+.. ....+..
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------------~~~~~~~ 73 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSF-------------KGCCSQS 73 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCE-------------EEEEEHH
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCc-------------ccCcccc
Confidence 457788888999998654 68999999999 6899998867999999999999998652 1123456
Q ss_pred hhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccc
Q 006902 394 LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEI 473 (626)
Q Consensus 394 l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~ 473 (626)
+..+++|+.|+++.+.... +......+++|+.|++.++...... ....+..+++|+.|+++++... ...+..+.
T Consensus 74 ~~~~~~L~~L~Ls~n~i~~---l~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~- 147 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTR-VAFNGIFN- 147 (306)
T ss_dssp HHSCSCCCEEECCSCSEEE---EEEEEETCTTCCEEECTTSEEESST-TTTTTTTCTTCCEEECTTSCCE-ECSTTTTT-
T ss_pred cccccccCEEECCCCcccc---ChhhcCCCCCCCEEECCCCcccccc-cchhhhhccCCCEEECCCCcCC-ccchhhcc-
Confidence 7789999999987665432 2333445789999999987533211 2246778899999999987543 33344444
Q ss_pred cccccCccccCccCEEEEeCCCCCc-ccc-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecC
Q 006902 474 VRKRREPFVFRSLHHVTIYSCTKLK-DST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLS 551 (626)
Q Consensus 474 ~~~~~~~~~l~~L~~L~L~~c~~l~-~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~ 551 (626)
.+++|++|++++|.... .+| .+..+++|+.|++++| .+..++.. .+..+++|++|+++
T Consensus 148 --------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-----------~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 148 --------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT-----------AFNSLSSLQVLNMS 207 (306)
T ss_dssp --------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-----------TTTTCTTCCEEECT
T ss_pred --------cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHH-----------HhcCCCCCCEEECC
Confidence 78999999999974433 244 4889999999999998 45555332 56778999999999
Q ss_pred CccccccccC-CCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEecccccc
Q 006902 552 YLPILKSIYW-KPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQWW 604 (626)
Q Consensus 552 ~~~~l~~i~~-~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~ 604 (626)
++. +..++. ....+++|++|++++|+--...|.........|+..+....-|
T Consensus 208 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 208 HNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 864 555543 4567999999999998443334444333123566665444333
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.62 E-value=2e-15 Score=166.61 Aligned_cols=59 Identities=25% Similarity=0.222 Sum_probs=33.4
Q ss_pred cccccccccccccccc-hHHhhhcccchhcccCCCCcc--ccchhhhcCCCcccEEEccCCCCC
Q 006902 312 SLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLN--KIPRQLISKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~--~lP~~~i~~L~~L~~L~l~~~~~~ 372 (626)
+|++|+|++|.+..+| ..++++.+|++|++++| .+. .+|.. ++++++|++|++.+|.+.
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcce
Confidence 4555555555555554 44555666666666655 344 34554 666666666666665544
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.62 E-value=1.5e-15 Score=167.57 Aligned_cols=177 Identities=18% Similarity=0.131 Sum_probs=121.3
Q ss_pred cccccccccccccccchH-HhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELPEE-LKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
.|++|+++++.+..+|.. ++.+.+|++|++++| .+..+|.+ +.++++|++|++.+|.+.. ..
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~-l~~l~~L~~L~l~~n~l~~---------------~~ 317 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSG-LVGLSTLKKLVLSANKFEN---------------LC 317 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSS-CCSCTTCCEEECTTCCCSB---------------GG
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChh-hcccccCCEEECccCCcCc---------------Cc
Confidence 789999999999988755 899999999999999 68999998 9999999999999998653 33
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHh-hccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeec
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILL-SSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKID 469 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~ 469 (626)
+..+..+++|+.|.+..+.... .+. .....+++|+.|++.++.-.........+..+++|+.|+++++... .+.+.
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~ 394 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKRL--ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTE 394 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSCC--BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTT
T ss_pred hhhhhccCcCCEEECCCCCccc--ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHH
Confidence 4568899999999987654321 011 1133468999999998865422111336788999999999986533 33344
Q ss_pred cccccccccCccccCccCEEEEeCCCCCcccc--ccccCCCccEEEEecc
Q 006902 470 YTEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDC 517 (626)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~ 517 (626)
.+. .+++|++|++++|......+ .+..+++|+.|++++|
T Consensus 395 ~~~---------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 395 AFK---------ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp TTT---------TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred Hhc---------CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 443 34555555555442222211 1444455555555444
No 40
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.62 E-value=1.1e-15 Score=173.11 Aligned_cols=182 Identities=19% Similarity=0.102 Sum_probs=140.0
Q ss_pred ccccccccccccc-ccchHHhh--hcccchhcccCCCCcc-ccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCc
Q 006902 312 SLELLDISHTYIQ-ELPEELKL--LVNLKCLNLRGTGQLN-KIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGG 387 (626)
Q Consensus 312 ~Lr~L~L~~~~i~-~LP~~i~~--L~~L~~L~l~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 387 (626)
.|++|++++|.+. .+|..+.. +.+|++|++++|. +. .+|.. ++++++|++|++.+|.+.+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~Ls~N~l~~-------------- 432 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG-FTGKIPPT-LSNCSELVSLHLSFNYLSG-------------- 432 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE-EEEECCGG-GGGCTTCCEEECCSSEEES--------------
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc-cccccCHH-HhcCCCCCEEECcCCcccC--------------
Confidence 8999999999886 57877777 8899999999995 55 78887 9999999999999997642
Q ss_pred cchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEe
Q 006902 388 EVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELK 467 (626)
Q Consensus 388 ~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~ 467 (626)
..+..++++++|+.|.+..+...+ .++.....+++|+.|++.++.-.... ...+..+++|+.|++++|..... .
T Consensus 433 -~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~-~ 506 (768)
T 3rgz_A 433 -TIPSSLGSLSKLRDLKLWLNMLEG--EIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSNNRLTGE-I 506 (768)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSC-C
T ss_pred -cccHHHhcCCCCCEEECCCCcccC--cCCHHHcCCCCceEEEecCCcccCcC--CHHHhcCCCCCEEEccCCccCCc-C
Confidence 455668889999999987665432 22333344688999999988654332 23577889999999998775543 5
Q ss_pred eccccccccccCccccCccCEEEEeCCCCCcccc-ccccCCCccEEEEeccCcccccc
Q 006902 468 IDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST-FLVFAPNLKSLTLFDCGAMEEII 524 (626)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~L~~L~~L~L~~~~~l~~i~ 524 (626)
|.|+. .+++|++|+|++|.....+| .++.+++|+.|+|++|.....+|
T Consensus 507 p~~~~---------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 507 PKWIG---------RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CGGGG---------GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred ChHHh---------cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 67776 78899999999986665666 48889999999998886544444
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.62 E-value=7.8e-15 Score=158.71 Aligned_cols=101 Identities=23% Similarity=0.221 Sum_probs=59.7
Q ss_pred ccccccccccccccc-chHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
+|++|+|++|.+.++ |..++.+.+|++|++++| .+..+|.. .+++|++|++++|.+.++ ..
T Consensus 46 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~L~~N~l~~~--------------~~ 107 (520)
T 2z7x_B 46 KLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH---PTVNLKHLDLSFNAFDAL--------------PI 107 (520)
T ss_dssp TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC---CCCCCSEEECCSSCCSSC--------------CC
T ss_pred cccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc---ccCCccEEeccCCccccc--------------cc
Confidence 566666666666555 455666666666666666 45566652 566666666666654422 23
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccce--eEEEEeccC
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCI--RSLFLWLAG 435 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L--~~L~l~~~~ 435 (626)
+..++++++|+.|++..+.... ..+ ..+++| +.|++.++.
T Consensus 108 p~~~~~l~~L~~L~L~~n~l~~-~~~----~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 108 CKEFGNMSQLKFLGLSTTHLEK-SSV----LPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CGGGGGCTTCCEEEEEESSCCG-GGG----GGGTTSCEEEEEEEECT
T ss_pred hhhhccCCcceEEEecCcccch-hhc----cccccceeeEEEeeccc
Confidence 4567888888888888765433 111 123444 777776654
No 42
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1e-15 Score=172.74 Aligned_cols=257 Identities=12% Similarity=0.043 Sum_probs=161.4
Q ss_pred Ccccccccccccccc------------------cchHHh--hhcccchhcccCCCCccccchhhhcCCCcccEEEccCCC
Q 006902 311 SSLELLDISHTYIQE------------------LPEELK--LLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTG 370 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~------------------LP~~i~--~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 370 (626)
.+|++|+|++|.+.. +|..++ +|.+|++|+|++|.....+|.. +++|++|++|++.+|.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNR 526 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCC
Confidence 489999999999998 999988 9999999999999767889987 9999999999999997
Q ss_pred -CCcccCCCCcccccCCccchhHHhhccC-------CCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccc
Q 006902 371 -PFSFDEAPEDSVLFGGGEVLIQELLGLK-------YLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVD 442 (626)
Q Consensus 371 -~~~~~~~~~~~~~~~~~~~~~~~l~~L~-------~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 442 (626)
+.+ ...|..+++++ +|+.|.+..+....+... .....+++|+.|++.++.-. .+
T Consensus 527 ~lsg--------------~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~-~~l~~L~~L~~L~Ls~N~l~-~l-- 588 (876)
T 4ecn_A 527 GISA--------------AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS-ASLQKMVKLGLLDCVHNKVR-HL-- 588 (876)
T ss_dssp TSCH--------------HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH-HHHTTCTTCCEEECTTSCCC-BC--
T ss_pred Cccc--------------ccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh-hhhhcCCCCCEEECCCCCcc-cc--
Confidence 431 13555555554 888888776655432210 02334667888888877544 33
Q ss_pred cccccccccccceeecccCCcceEeeccccccccccCccccCc-cCEEEEeCCCCCccccc-cccC--CCccEEEEeccC
Q 006902 443 ATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRS-LHHVTIYSCTKLKDSTF-LVFA--PNLKSLTLFDCG 518 (626)
Q Consensus 443 ~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~-L~~L~L~~c~~l~~l~~-l~~L--~~L~~L~L~~~~ 518 (626)
..+..+++|+.|.++++... . .|.++. .+++ |+.|+|++|. +..+|. ++.+ ++|+.|+|++|.
T Consensus 589 -p~~~~L~~L~~L~Ls~N~l~-~-lp~~l~---------~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 589 -EAFGTNVKLTDLKLDYNQIE-E-IPEDFC---------AFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp -CCCCTTSEESEEECCSSCCS-C-CCTTSC---------EECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred -hhhcCCCcceEEECcCCccc-c-chHHHh---------hccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCc
Confidence 26677778888888776543 2 333333 4555 6666666653 335552 3333 236666666553
Q ss_pred ccccccccCc-cc-----cc----------cccCCC-CCcCCccceeecCCccccccccCCCCC--------CCCccEEE
Q 006902 519 AMEEIISVGK-IA-----ET----------PEMMGH-ISPFENLQMLHLSYLPILKSIYWKPLP--------FTHLKEME 573 (626)
Q Consensus 519 ~l~~i~~~~~-~~-----~~----------~~~~~~-~~~fp~L~~L~l~~~~~l~~i~~~~~~--------lp~L~~L~ 573 (626)
....++.... .+ .. ..++.. ...+++|++|+++++ .+..++..... +++|++|+
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred CCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEE
Confidence 3221111000 00 00 000001 124678888888875 55566654333 23888888
Q ss_pred ecCCCCCCCCCCCCC-cCcCcceEEeccc
Q 006902 574 VSGCNQLEKHPLDSN-SAKERKVVIRGDT 601 (626)
Q Consensus 574 i~~C~~L~~lP~~~~-~~l~~l~~~~~~~ 601 (626)
+++| +|..+|.... ..++.|+..+...
T Consensus 735 Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 735 LRFN-KLTSLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CCSS-CCCCCCGGGSTTTCTTCCEEECCS
T ss_pred CCCC-CCccchHHhhhccCCCcCEEEeCC
Confidence 8887 7778887654 2356666665443
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.61 E-value=6.8e-16 Score=170.39 Aligned_cols=260 Identities=15% Similarity=0.041 Sum_probs=165.1
Q ss_pred CcccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCC-Cccc-----cc
Q 006902 311 SSLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAP-EDSV-----LF 384 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~-~~~~-----~~ 384 (626)
.+|++|+++++.+..+| .+..+.+|++|++++| .+..+|. + .+++|++|++.+|....- .+. ...+ +.
T Consensus 285 ~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n-~l~~lp~--~-~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls 358 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC-QLKQFPT--L-DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLS 358 (606)
T ss_dssp TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESC-CCSSCCC--C-CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECC
T ss_pred CCCCEEEecCccchhhh-hccccccCCEEEcccc-cCccccc--C-CCCccceeeccCCcCccc-hhhccCCCCCEEECc
Confidence 46777888888777777 7777778888888887 4577773 5 777777777777743210 000 0000 11
Q ss_pred CCc----cchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeeccc
Q 006902 385 GGG----EVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRG 460 (626)
Q Consensus 385 ~~~----~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 460 (626)
+.. ...+..+..+++|+.|++..+....+ +.....+++|+.|++.++...... ....+..+++|+.|++++|
T Consensus 359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM---SANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE---CCCCTTCTTCCEEECTTSEEESTT-TTTTTTTCTTCCEEECTTS
T ss_pred CCccCCCcchhhhhccCCcccEeECCCCccccc---hhhccCCCCCCeeECCCCccCCcc-ChhhhhccccCCEEECcCC
Confidence 111 11245566677777776665443322 123334567777777766433221 2235667778888888876
Q ss_pred CCcceEeeccccccccccCccccCccCEEEEeCCCCCcc-cc-ccccCCCccEEEEeccCccccccccCccccccccCCC
Q 006902 461 FELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKD-ST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGH 538 (626)
Q Consensus 461 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 538 (626)
.... ..+..+. .+++|++|++++|..... +| .++.+++|+.|+|++|. +..++.. .
T Consensus 435 ~l~~-~~~~~~~---------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-----------~ 492 (606)
T 3vq2_A 435 NTKI-DFDGIFL---------GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWG-----------V 492 (606)
T ss_dssp CCEE-CCTTTTT---------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-----------T
T ss_pred CCCc-cchhhhc---------CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChh-----------h
Confidence 5433 2344443 688999999998754442 34 47889999999999884 4444331 5
Q ss_pred CCcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcC-cceEEecccccc
Q 006902 539 ISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKE-RKVVIRGDTQWW 604 (626)
Q Consensus 539 ~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~-~l~~~~~~~~~~ 604 (626)
+..+++|++|+++++.-....+.....+++|++|++++| +++.+|..... ++ .|+..+....-|
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~-l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQH-FPKSLAFFNLTNNSV 557 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGG-SCTTCCEEECCSCCC
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhh-hcccCcEEEccCCCc
Confidence 678999999999997544445666788999999999998 58899987543 33 466666443333
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=170.28 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=68.2
Q ss_pred Ccccccccccc-ccccc-chHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCcc
Q 006902 311 SSLELLDISHT-YIQEL-PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGE 388 (626)
Q Consensus 311 ~~Lr~L~L~~~-~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 388 (626)
.+|++|+|++| .+..+ |..+++|.+|++|+|++| .+..++++.+.+|++|++|++++|.+.+
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--------------- 111 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSD--------------- 111 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSS---------------
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCc---------------
Confidence 36666777666 33445 566677777777777776 3555532236677777777777665432
Q ss_pred chhHH--hhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCC
Q 006902 389 VLIQE--LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGD 436 (626)
Q Consensus 389 ~~~~~--l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 436 (626)
..+.. +++|++|+.|+++.+....+. .......+++|+.|++.++.-
T Consensus 112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 112 AVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCC
T ss_pred ccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcC
Confidence 12333 788999999999877654321 112234478899999988753
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.60 E-value=2.2e-15 Score=159.55 Aligned_cols=174 Identities=16% Similarity=0.067 Sum_probs=90.8
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCccc-----ccCC
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSV-----LFGG 386 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~ 386 (626)
+|++|+|++|.+.++| ++.+.+|++|++++| .+..+| ++++++|++|++.+|.+.++++.. ..+ +.+.
T Consensus 65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N~l~~l~~~~-l~~L~~L~l~~N 137 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQ-NPLLTYLNCARN 137 (457)
T ss_dssp TCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSSCCSCCCCTT-CTTCCEEECTTS
T ss_pred CCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCCcCCeecCCC-CCcCCEEECCCC
Confidence 6777788877777776 777777888888777 466664 677777777777777655321000 000 0000
Q ss_pred ccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceE
Q 006902 387 GEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEEL 466 (626)
Q Consensus 387 ~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l 466 (626)
....+ .++.+++|+.|++..+.... .+ ....+++|+.|++.++.-. .+ .+..+++|+.|.++++.-.. +
T Consensus 138 ~l~~l-~l~~l~~L~~L~l~~n~~~~--~~--~~~~l~~L~~L~ls~n~l~-~l----~l~~l~~L~~L~l~~N~l~~-~ 206 (457)
T 3bz5_A 138 TLTEI-DVSHNTQLTELDCHLNKKIT--KL--DVTPQTQLTTLDCSFNKIT-EL----DVSQNKLLNRLNCDTNNITK-L 206 (457)
T ss_dssp CCSCC-CCTTCTTCCEEECTTCSCCC--CC--CCTTCTTCCEEECCSSCCC-CC----CCTTCTTCCEEECCSSCCSC-C
T ss_pred cccee-ccccCCcCCEEECCCCCccc--cc--ccccCCcCCEEECCCCccc-ee----ccccCCCCCEEECcCCcCCe-e
Confidence 00000 13344444444443221100 00 0112344555555544322 11 13444555555555433211 1
Q ss_pred eeccccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEecc
Q 006902 467 KIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDC 517 (626)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~ 517 (626)
+...+++|+.|++++| .+..+| ++.+++|+.|+++++
T Consensus 207 ------------~l~~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 207 ------------DLNQNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp ------------CCTTCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSS
T ss_pred ------------ccccCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCC
Confidence 1235677777777775 444565 677777777777766
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.59 E-value=3.9e-15 Score=151.21 Aligned_cols=225 Identities=19% Similarity=0.127 Sum_probs=140.7
Q ss_pred cccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
++++|+|++|.+..+| ..++++.+|++|++++| .+..++...+.++++|++|++.+|.+..++.
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-------------- 119 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPP-------------- 119 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCS--------------
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCc--------------
Confidence 6788888888888774 47888888888888888 5777643338888888888888887653211
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
.+. ++|+.|++..+....+. ......+++|+.|++.++...........+..+ +|+.|+++++.-.. + +..
T Consensus 120 --~~~--~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l-~~~ 190 (332)
T 2ft3_A 120 --NLP--SSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-I-PKD 190 (332)
T ss_dssp --SCC--TTCCEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-C-CSS
T ss_pred --ccc--ccCCEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-c-Ccc
Confidence 111 56777776654433211 111233567777777766543111012234444 77777777654222 1 111
Q ss_pred ccccccccCccccCccCEEEEeCCCCCcccc--ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCcccee
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQML 548 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L 548 (626)
.+++|++|++++| .+..++ .+..+++|+.|+|++| .+..++.. .+..+++|++|
T Consensus 191 -----------~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~-----------~~~~l~~L~~L 246 (332)
T 2ft3_A 191 -----------LPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIENG-----------SLSFLPTLREL 246 (332)
T ss_dssp -----------SCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT-----------GGGGCTTCCEE
T ss_pred -----------ccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCChh-----------HhhCCCCCCEE
Confidence 2267788888776 444443 3777888888888776 34444321 34567788888
Q ss_pred ecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCC
Q 006902 549 HLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLD 586 (626)
Q Consensus 549 ~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~ 586 (626)
+++++ .+..+|.....+++|++|+++++ +++.+|..
T Consensus 247 ~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~ 282 (332)
T 2ft3_A 247 HLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVN 282 (332)
T ss_dssp ECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred ECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChh
Confidence 88774 56677766777888888888875 56777653
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.59 E-value=3.2e-15 Score=162.90 Aligned_cols=61 Identities=20% Similarity=0.355 Sum_probs=36.2
Q ss_pred cccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCc
Q 006902 312 SLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFS 373 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~ 373 (626)
+|++|+|++|.+..+| ..++.+.+|++|++++| .+..+|...++++++|++|++++|.+..
T Consensus 51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred cccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccc
Confidence 5666666666665554 45666666666666666 3555555445666666666666665543
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=157.73 Aligned_cols=145 Identities=14% Similarity=0.083 Sum_probs=86.5
Q ss_pred cccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCcc---cc-ccccCCCccEEEEeccCcccc
Q 006902 447 ADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKD---ST-FLVFAPNLKSLTLFDCGAMEE 522 (626)
Q Consensus 447 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~---l~-~l~~L~~L~~L~L~~~~~l~~ 522 (626)
..+++|++|+++++..... .+.++. .+++|++|++++|. +.. +| .++.+++|+.|+|++|.....
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~-~~~~~~---------~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDT-VFENCG---------HLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SSCCCCCEEECCSSCCCTT-TTTTCC---------CCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred hhCCcccEEEeECCccChh-hhhhhc---------cCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 4556677777776543321 233333 66777777777763 333 22 266777777777777643332
Q ss_pred ccccCccc--cccccC--------CCCCcC-CccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCc
Q 006902 523 IISVGKIA--ETPEMM--------GHISPF-ENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAK 591 (626)
Q Consensus 523 i~~~~~~~--~~~~~~--------~~~~~f-p~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l 591 (626)
++...+.. ....+. .....+ ++|++|+++++ .+..+|.....+++|++|++++| +++.+|......+
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l 467 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL 467 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccC
Confidence 44321110 000000 001122 68999999885 67788877778999999999998 7889998733446
Q ss_pred CcceEEecccccc
Q 006902 592 ERKVVIRGDTQWW 604 (626)
Q Consensus 592 ~~l~~~~~~~~~~ 604 (626)
+.|+..+....-|
T Consensus 468 ~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 468 TSLQKIWLHTNPW 480 (520)
T ss_dssp TTCCEEECCSSCB
T ss_pred CcccEEECcCCCC
Confidence 6777776544433
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=3.8e-15 Score=151.31 Aligned_cols=238 Identities=14% Similarity=0.120 Sum_probs=159.1
Q ss_pred Cccccccccccccccc-chHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.+|++|+|++|.+..+ |..++.+.+|++|++++| .+..+|.. +. ++|++|++.+|.+..+
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~~--------------- 138 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPN-LP--SSLVELRIHDNRIRKV--------------- 138 (332)
T ss_dssp TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSS-CC--TTCCEEECCSSCCCCC---------------
T ss_pred CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcc-cc--ccCCEEECCCCccCcc---------------
Confidence 4799999999999987 788999999999999999 68999987 54 8999999999987532
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeec
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKID 469 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~ 469 (626)
....+.++++|+.|.+..+..............+ +|+.|++.++.-.. ++. .+ .++|++|+++++.. ..+.+.
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~--~~--~~~L~~L~l~~n~i-~~~~~~ 211 (332)
T 2ft3_A 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPK--DL--PETLNELHLDHNKI-QAIELE 211 (332)
T ss_dssp CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCS--SS--CSSCSCCBCCSSCC-CCCCTT
T ss_pred CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCc--cc--cCCCCEEECCCCcC-CccCHH
Confidence 1233778899999988766543221122222223 77888887765332 211 11 26888888887643 333334
Q ss_pred cccccccccCccccCccCEEEEeCCCCCcccc--ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccce
Q 006902 470 YTEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQM 547 (626)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~ 547 (626)
.+. .+++|++|++++| .+..++ .++.+++|+.|+|++| .+..++. .+..+++|++
T Consensus 212 ~l~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~------------~l~~l~~L~~ 268 (332)
T 2ft3_A 212 DLL---------RYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPA------------GLPDLKLLQV 268 (332)
T ss_dssp SST---------TCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCT------------TGGGCTTCCE
T ss_pred Hhc---------CCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecCh------------hhhcCccCCE
Confidence 443 6788888888886 444444 4788888888888887 4555554 4567888888
Q ss_pred eecCCccccccccCCC-------CCCCCccEEEecCCCCCC-CCCCCCCcCcCcceEEe
Q 006902 548 LHLSYLPILKSIYWKP-------LPFTHLKEMEVSGCNQLE-KHPLDSNSAKERKVVIR 598 (626)
Q Consensus 548 L~l~~~~~l~~i~~~~-------~~lp~L~~L~i~~C~~L~-~lP~~~~~~l~~l~~~~ 598 (626)
|+++++ .++.++... ..+++|+.|++.++|-.. .++......++.|+.++
T Consensus 269 L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 269 VYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp EECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred EECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 888874 566655331 125778888888887431 23332223345554444
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.57 E-value=6.8e-15 Score=160.33 Aligned_cols=122 Identities=17% Similarity=0.168 Sum_probs=80.9
Q ss_pred ccccccccccccccc-chHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCC-C-Cccc-----c
Q 006902 312 SLELLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEA-P-EDSV-----L 383 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~-~-~~~~-----~ 383 (626)
+|++|+|++|.+..+ |..++.+.+|++|++++| .+..+|.+.+.++++|++|++++|.+.++... . ...+ +
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 799999999999987 578999999999999999 68888865599999999999999987643211 0 0011 1
Q ss_pred cCCcc---chhHHhhccCCCceEEEEEec-hhhHHHHhhccccccceeEEEEeccCC
Q 006902 384 FGGGE---VLIQELLGLKYLEVLELTLGS-YHALQILLSSNKLKSCIRSLFLWLAGD 436 (626)
Q Consensus 384 ~~~~~---~~~~~l~~L~~L~~L~i~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~ 436 (626)
.+... ..+..++++++|+.|++..+. ...+. ......+++|+.|++.++.-
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETTC
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccC--HhhhhcccccCeeeccCCcc
Confidence 12111 223346666777777766553 11110 01122356777777776653
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=2.6e-14 Score=159.91 Aligned_cols=178 Identities=17% Similarity=0.139 Sum_probs=87.3
Q ss_pred cccccccccccccccch-HHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELPE-ELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
+|++|+|++|.+..+|. .++.+.+|++|++++| .+..+|...++++++|++|++.+|.+.+ ..
T Consensus 74 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------~~ 137 (680)
T 1ziw_A 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS---------------TK 137 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSC---------------CC
T ss_pred CcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccc---------------cC
Confidence 45555555555555554 3555555555555555 3444443225555555555555554332 12
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCcccccccccccc---------------------
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADL--------------------- 449 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~--------------------- 449 (626)
+..++++++|+.|.+..+....+..-......+++|+.|++.++.-.... ...+..+
T Consensus 138 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 215 (680)
T 1ziw_A 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS--PGCFHAIGRLFGLFLNNVQLGPSLTEKL 215 (680)
T ss_dssp CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC--TTGGGGSSEECEEECTTCCCHHHHHHHH
T ss_pred chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC--hhhhhhhhhhhhhhccccccChhhHHHH
Confidence 23356777788877765543222111101112357788888766432111 1122233
Q ss_pred ------ccccceeecccCCcceEeeccccccccccCcccc--CccCEEEEeCCCCCcccc--ccccCCCccEEEEeccC
Q 006902 450 ------NHLNELWIYRGFELEELKIDYTEIVRKRREPFVF--RSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDCG 518 (626)
Q Consensus 450 ------~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~~ 518 (626)
++|+.|.++++.. ....+.++. .+ ++|+.|++++|. +..++ .++.+++|+.|++++|.
T Consensus 216 ~~~l~~~~L~~L~L~~n~l-~~~~~~~~~---------~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 216 CLELANTSIRNLSLSNSQL-STTSNTTFL---------GLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp HHHHTTSCCCEEECTTSCC-CEECTTTTG---------GGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCC
T ss_pred HHHhhhccccEEEccCCcc-cccChhHhh---------ccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCc
Confidence 3344444444322 222222322 33 347777777764 33332 36677777777777663
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=165.01 Aligned_cols=247 Identities=16% Similarity=0.112 Sum_probs=160.0
Q ss_pred CcccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 311 SSLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
.+|++|+++++.+.++|..+..+ +|++|++++| .+..+|. ..+++|++|++.+|.... ..
T Consensus 282 ~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~---~~l~~L~~L~l~~n~~~~---------------~~ 341 (570)
T 2z63_A 282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNC-KFGQFPT---LKLKSLKRLTFTSNKGGN---------------AF 341 (570)
T ss_dssp TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESC-BCSSCCB---CBCSSCCEEEEESCBSCC---------------BC
T ss_pred CcccEEEecCccchhhhhhhccC-CccEEeeccC-cccccCc---ccccccCEEeCcCCcccc---------------cc
Confidence 36777777777777777777777 7777777777 4666665 366677777777765431 00
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
+ ...+++|+.|++..+..............+++|+.|++.++...... ..+..+++|+.|.++++..........
T Consensus 342 ~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 342 S--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp C--CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE---EEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred c--cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc---ccccccCCCCEEEccCCccccccchhh
Confidence 0 15677788887765443221100111122567888888876533211 136677888888888754332111122
Q ss_pred ccccccccCccccCccCEEEEeCCCCCcccc-ccccCCCccEEEEeccCccc-cccccCccccccccCCCCCcCCcccee
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDST-FLVFAPNLKSLTLFDCGAME-EIISVGKIAETPEMMGHISPFENLQML 548 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~L~~L~~L~L~~~~~l~-~i~~~~~~~~~~~~~~~~~~fp~L~~L 548 (626)
+ ..+++|++|++++|......+ .+..+++|+.|+|++|.... .++. .+..+++|++|
T Consensus 417 ~---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~------------~~~~l~~L~~L 475 (570)
T 2z63_A 417 F---------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFL 475 (570)
T ss_dssp T---------TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEE
T ss_pred h---------hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh------------hhhcccCCCEE
Confidence 2 378899999999985554444 47889999999999885432 2332 56789999999
Q ss_pred ecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEecccccc
Q 006902 549 HLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQWW 604 (626)
Q Consensus 549 ~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~ 604 (626)
++++|.--...+.....+++|++|++++| +++.+|......++.|+.++.....|
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 99997543333666778999999999998 78888765444567777776444333
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=5.4e-15 Score=146.68 Aligned_cols=218 Identities=15% Similarity=0.158 Sum_probs=117.3
Q ss_pred ccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHh
Q 006902 315 LLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQEL 394 (626)
Q Consensus 315 ~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 394 (626)
.++.++++++.+|..+ ..+|++|+++++ .+..+|...+.++++|++|++.+|.+.+ ..+..+
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~---------------~~~~~~ 76 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLAR---------------IDAAAF 76 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCE---------------ECTTTT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccce---------------eCHhhc
Confidence 4455555566665433 345666666666 4555554435666666666666655432 112234
Q ss_pred hccCCCceEEEEEec-hhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccc
Q 006902 395 LGLKYLEVLELTLGS-YHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEI 473 (626)
Q Consensus 395 ~~L~~L~~L~i~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~ 473 (626)
..+++|+.|++..+. ...+. ......+++|+.|++.++.-.. . ....+..+++|++|+++++.. ..+.+..+.
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~--~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~- 150 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVD--PATFHGLGRLHTLHLDRCGLQE-L-GPGLFRGLAALQYLYLQDNAL-QALPDDTFR- 150 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCC--TTTTTTCTTCCEEECTTSCCCC-C-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTT-
T ss_pred CCccCCCEEeCCCCCCccccC--HHHhcCCcCCCEEECCCCcCCE-E-CHhHhhCCcCCCEEECCCCcc-cccCHhHhc-
Confidence 555555555554332 11110 1111224456666666554321 1 112456667777777776543 223333333
Q ss_pred cccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecC
Q 006902 474 VRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLS 551 (626)
Q Consensus 474 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~ 551 (626)
.+++|++|++++| .+..++. +..+++|+.|+++++. +..+... .+..+++|++|+++
T Consensus 151 --------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-----------~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 151 --------DLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPH-----------AFRDLGRLMTLYLF 209 (285)
T ss_dssp --------TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTT-----------TTTTCTTCCEEECC
T ss_pred --------cCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHh-----------HccCcccccEeeCC
Confidence 5677777777775 4455553 6677777777777763 3333221 44567777777777
Q ss_pred CccccccccCC-CCCCCCccEEEecCCC
Q 006902 552 YLPILKSIYWK-PLPFTHLKEMEVSGCN 578 (626)
Q Consensus 552 ~~~~l~~i~~~-~~~lp~L~~L~i~~C~ 578 (626)
++ .+..++.. ...+++|++|++.++|
T Consensus 210 ~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 210 AN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 74 44444432 4567777777777654
No 54
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.56 E-value=1e-14 Score=154.90 Aligned_cols=115 Identities=16% Similarity=0.050 Sum_probs=81.8
Q ss_pred ccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCcccc--ccccCCCccEEEEeccCccccc
Q 006902 446 FADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDCGAMEEI 523 (626)
Q Consensus 446 l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~~~l~~i 523 (626)
+..+++|+.|+++++.. ..+.+..+. .+++|++|+|++| .+..++ .++.+++|+.|+|++|. +..+
T Consensus 295 ~~~l~~L~~L~Ls~n~l-~~~~~~~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 362 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEI-NKIDDNAFW---------GLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRAL 362 (455)
T ss_dssp TTTCTTCCEEECTTSCC-CEECTTTTT---------TCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEE
T ss_pred cccCCCCCEEECCCCcc-cccChhHhc---------CcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-cccc
Confidence 44556666666665432 223333443 7899999999997 445553 47899999999999984 4555
Q ss_pred cccCccccccccCCCCCcCCccceeecCCccccccccCC-CCCCCCccEEEecCCCCCCCCC
Q 006902 524 ISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYWK-PLPFTHLKEMEVSGCNQLEKHP 584 (626)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~-~~~lp~L~~L~i~~C~~L~~lP 584 (626)
+.. .+..+++|++|+++++ .++.++.. ...+++|++|++++++---..|
T Consensus 363 ~~~-----------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 363 GDQ-----------SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTT-----------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred Chh-----------hccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 332 5678999999999984 67777754 4689999999999875443344
No 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=1.9e-14 Score=157.16 Aligned_cols=146 Identities=12% Similarity=0.031 Sum_probs=86.7
Q ss_pred cccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCcccc----ccccCCCccEEEEeccCcccc
Q 006902 447 ADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST----FLVFAPNLKSLTLFDCGAMEE 522 (626)
Q Consensus 447 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~----~l~~L~~L~~L~L~~~~~l~~ 522 (626)
..+++|+.|+++++.... ..+.++. .+++|++|++++| .+..++ .++.+++|+.|++++|.....
T Consensus 350 ~~l~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD-SVFQGCS---------TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SSCCCCCEEECCSSCCCT-TTTTTCC---------SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred cCCCCceEEECCCCcccc-chhhhhc---------ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 455667777776654332 1223332 5677777777775 444332 256677777777776643222
Q ss_pred ccccCccc--ccc-------cc-CCCCCcC-CccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCc
Q 006902 523 IISVGKIA--ETP-------EM-MGHISPF-ENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAK 591 (626)
Q Consensus 523 i~~~~~~~--~~~-------~~-~~~~~~f-p~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l 591 (626)
++...+.. ... .+ ......+ ++|++|+++++ .++.+|.....+++|++|++++| +++.+|......+
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l 496 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRL 496 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTC
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcC
Confidence 33211110 000 00 0011223 68999999986 78888888789999999999996 7889998733446
Q ss_pred CcceEEeccccccc
Q 006902 592 ERKVVIRGDTQWWN 605 (626)
Q Consensus 592 ~~l~~~~~~~~~~~ 605 (626)
+.|+..+....-|.
T Consensus 497 ~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 497 TSLQYIWLHDNPWD 510 (562)
T ss_dssp TTCCCEECCSCCBC
T ss_pred CCCCEEEecCCCcC
Confidence 66776665544443
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=6.7e-15 Score=141.94 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=122.7
Q ss_pred cccccccccccccccch-HHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccC-CCCCcccCCCCcccccCCccc
Q 006902 312 SLELLDISHTYIQELPE-ELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLG-TGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.+++|+++++.++.+|. .++.+.+|++|++++|..++.+|...+.++++|++|++.+ +.+..++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-------------- 97 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-------------- 97 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC--------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC--------------
Confidence 45566666666665554 4556666666666666225555554355666666666665 4433211
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCcccccccccccccccc---ceeecccCCcceE
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLN---ELWIYRGFELEEL 466 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~---~L~l~~~~~l~~l 466 (626)
+..+.++++|+ .|++.++.-.. ++ .+..+++|+ .|+++++..++.+
T Consensus 98 -~~~f~~l~~L~--------------------------~L~l~~n~l~~-lp---~~~~l~~L~~L~~L~l~~N~~l~~i 146 (239)
T 2xwt_C 98 -PDALKELPLLK--------------------------FLGIFNTGLKM-FP---DLTKVYSTDIFFILEITDNPYMTSI 146 (239)
T ss_dssp -TTSEECCTTCC--------------------------EEEEEEECCCS-CC---CCTTCCBCCSEEEEEEESCTTCCEE
T ss_pred -HHHhCCCCCCC--------------------------EEeCCCCCCcc-cc---ccccccccccccEEECCCCcchhhc
Confidence 11233444444 44444443221 21 233444555 8888887566665
Q ss_pred eeccccccccccCccccCccC-EEEEeCCCCCccccc-cccCCCccEEEEeccCccccccccCccccccccCCCCCcC-C
Q 006902 467 KIDYTEIVRKRREPFVFRSLH-HVTIYSCTKLKDSTF-LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPF-E 543 (626)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~L~-~L~L~~c~~l~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~f-p 543 (626)
.+..+. .+++|+ .|+++++ .+..+|. ....++|+.|+|++|..+..++.. .+..+ +
T Consensus 147 ~~~~~~---------~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~-----------~~~~l~~ 205 (239)
T 2xwt_C 147 PVNAFQ---------GLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD-----------AFGGVYS 205 (239)
T ss_dssp CTTTTT---------TTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTT-----------TTTTCSB
T ss_pred Cccccc---------chhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHH-----------Hhhcccc
Confidence 555454 688999 9999886 4556664 334489999999988657766542 34567 8
Q ss_pred ccceeecCCccccccccCCCCCCCCccEEEecCCCCC
Q 006902 544 NLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQL 580 (626)
Q Consensus 544 ~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L 580 (626)
+|++|++++ ..++.++.. .|++|++|.+.+|+.|
T Consensus 206 ~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 206 GPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp CCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC---
T ss_pred CCcEEECCC-CccccCChh--HhccCceeeccCccCC
Confidence 999999998 567777744 7999999999998765
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=159.48 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=61.5
Q ss_pred ccCccCEEEEeCCCCCcccc--ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcccc-cc
Q 006902 482 VFRSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPIL-KS 558 (626)
Q Consensus 482 ~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l-~~ 558 (626)
.+++|++|++++|......+ .+..+++|+.|++++|......+ ..+..+++|++|++++|.-. ..
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------------GIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT------------TTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch------------hhhhcCCcCcEEECcCCcCcccc
Confidence 34455555555442222112 24455555555555553222111 14567889999999887644 35
Q ss_pred ccCCCCCCCCccEEEecCCCCCCCC-CCCCCcCcCcceEEeccc
Q 006902 559 IYWKPLPFTHLKEMEVSGCNQLEKH-PLDSNSAKERKVVIRGDT 601 (626)
Q Consensus 559 i~~~~~~lp~L~~L~i~~C~~L~~l-P~~~~~~l~~l~~~~~~~ 601 (626)
+|.....+++|++|++.+| +++.+ |.... .++.|+..+...
T Consensus 462 ~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~ 503 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQC-QLEQLSPTAFN-SLSSLQVLNMAS 503 (570)
T ss_dssp ECSCCTTCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECCS
T ss_pred chhhhhcccCCCEEECCCC-ccccCChhhhh-cccCCCEEeCCC
Confidence 7767788999999999998 45555 54443 356666665543
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=148.35 Aligned_cols=230 Identities=15% Similarity=0.129 Sum_probs=166.1
Q ss_pred Ccccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.+|++|+|++|.+..++ ..++++.+|++|++++| .+..+|.+.+.++++|++|++.+|.+..++.
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~------------- 141 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE------------- 141 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCS-------------
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCc-------------
Confidence 48999999999999885 67999999999999999 6899998768999999999999998764321
Q ss_pred hhHHhhccCCCceEEEEEec-hhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEee
Q 006902 390 LIQELLGLKYLEVLELTLGS-YHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKI 468 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~ 468 (626)
...+.++++|+.|++..+. ...+. ......+++|+.|++.++.-.. . ....+..+++|++|+++++.. ..+..
T Consensus 142 -~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~-~~~~l~~l~~L~~L~l~~n~l-~~~~~ 215 (353)
T 2z80_A 142 -TSLFSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASDLQS-Y-EPKSLKSIQNVSHLILHMKQH-ILLLE 215 (353)
T ss_dssp -SCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETTCCE-E-CTTTTTTCSEEEEEEEECSCS-TTHHH
T ss_pred -hhhhccCCCCcEEECCCCccccccC--HHHccCCCCCCEEECCCCCcCc-c-CHHHHhccccCCeecCCCCcc-ccchh
Confidence 0236789999999998763 22211 1123346889999999886442 2 234678889999999998764 33322
Q ss_pred ccccccccccCccccCccCEEEEeCCCCCcccc-----ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCC
Q 006902 469 DYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST-----FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFE 543 (626)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-----~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp 543 (626)
.+.. .+++|+.|++++|. +..++ .....+.++.+++.++. +...... .+...+..++
T Consensus 216 ~~~~---------~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~-------~l~~~l~~l~ 277 (353)
T 2z80_A 216 IFVD---------VTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLF-------QVMKLLNQIS 277 (353)
T ss_dssp HHHH---------HTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCB-CCHHHHH-------HHHHHHHTCT
T ss_pred hhhh---------hcccccEEECCCCc-cccccccccccccccchhhcccccccc-ccCcchh-------hhHHHHhccc
Confidence 2232 57999999999974 44333 23457788889988773 2221100 0111346789
Q ss_pred ccceeecCCccccccccCCC-CCCCCccEEEecCCCC
Q 006902 544 NLQMLHLSYLPILKSIYWKP-LPFTHLKEMEVSGCNQ 579 (626)
Q Consensus 544 ~L~~L~l~~~~~l~~i~~~~-~~lp~L~~L~i~~C~~ 579 (626)
+|++|+++++ .++.++... ..+++|++|++.+++-
T Consensus 278 ~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 278 GLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 9999999985 677888764 7899999999999853
No 59
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=2.3e-15 Score=153.20 Aligned_cols=233 Identities=15% Similarity=0.100 Sum_probs=153.1
Q ss_pred CcccccccccccccccchHHhhhcccchhcccCCCCccc--cchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCcc
Q 006902 311 SSLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNK--IPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGE 388 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 388 (626)
.++++|+++++.+...+..+..+.+|++|++++|. +.. +|.. +.++++|++|++.+|.+. .
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~-~~~~~~L~~L~L~~~~l~---------------~ 132 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGI-LSQCSKLQNLSLEGLRLS---------------D 132 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHH-HTTBCCCSEEECTTCBCC---------------H
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHH-HhhCCCCCEEeCcCcccC---------------H
Confidence 37888999999888877778888999999999984 553 6765 888999999999988653 3
Q ss_pred chhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccc-cccceeecccC-Ccc-e
Q 006902 389 VLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLN-HLNELWIYRGF-ELE-E 465 (626)
Q Consensus 389 ~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~-~l~-~ 465 (626)
..+..+..+++|+.|++..+.......+......+++|+.|++.++...........+..++ +|++|++++|. .+. .
T Consensus 133 ~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 133 PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 56677888899999988766321211233333346789999998883332220112456777 89999998874 232 1
Q ss_pred EeeccccccccccCccccCccCEEEEeCCCCCcc--ccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCC
Q 006902 466 LKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKD--STFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFE 543 (626)
Q Consensus 466 l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp 543 (626)
-.+.... .+++|++|++++|..+++ ++.++.+++|+.|+|++|..+..... ..+..+|
T Consensus 213 ~l~~~~~---------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------~~l~~~~ 272 (336)
T 2ast_B 213 DLSTLVR---------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-----------LELGEIP 272 (336)
T ss_dssp HHHHHHH---------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-----------GGGGGCT
T ss_pred HHHHHHh---------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-----------HHHhcCC
Confidence 1123333 678999999999875443 44588889999999988863322211 0345688
Q ss_pred ccceeecCCccccccccCCCCCC-CCccEEEecCCCCCCCCCC
Q 006902 544 NLQMLHLSYLPILKSIYWKPLPF-THLKEMEVSGCNQLEKHPL 585 (626)
Q Consensus 544 ~L~~L~l~~~~~l~~i~~~~~~l-p~L~~L~i~~C~~L~~lP~ 585 (626)
+|++|++++| +..- ....+ .+|..|++ +|+++.....
T Consensus 273 ~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l-~~n~l~~~~~ 310 (336)
T 2ast_B 273 TLKTLQVFGI--VPDG--TLQLLKEALPHLQI-NCSHFTTIAR 310 (336)
T ss_dssp TCCEEECTTS--SCTT--CHHHHHHHSTTSEE-SCCCSCCTTC
T ss_pred CCCEEeccCc--cCHH--HHHHHHhhCcceEE-ecccCccccC
Confidence 9999999887 2211 11122 23555556 4567776443
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.54 E-value=3.1e-14 Score=159.37 Aligned_cols=193 Identities=17% Similarity=0.144 Sum_probs=107.9
Q ss_pred ccccccccccccccc-chHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
+|++|+|++|.+..+ |..++++.+|++|++++| .+..+|...+.++++|++|++++|.+.++ .
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~---------------~ 113 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKI---------------K 113 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCC---------------C
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCcc---------------C
Confidence 567777777766655 456677777777777777 46666664466777777777777665421 1
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
+..++++++|++|++..+..... .......+++|+.|++.++......+.......+++|+.|+++++.. ..+.+..
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~ 190 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSST--KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI-KEFSPGC 190 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCC--CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC-CCBCTTG
T ss_pred hhHccccCCCCEEECCCCccccc--CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc-cccChhh
Confidence 22367777888887765543221 11122346678888887765332211111223456788888876532 2223332
Q ss_pred cccccccc------------------CccccCccCEEEEeCCCCCcccc-ccccCC--CccEEEEeccCcccccc
Q 006902 471 TEIVRKRR------------------EPFVFRSLHHVTIYSCTKLKDST-FLVFAP--NLKSLTLFDCGAMEEII 524 (626)
Q Consensus 471 ~~~~~~~~------------------~~~~l~~L~~L~L~~c~~l~~l~-~l~~L~--~L~~L~L~~~~~l~~i~ 524 (626)
+.....+. .....++|+.|++++|......+ ++..++ +|+.|+|++|. +..++
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~ 264 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVG 264 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEEC
T ss_pred hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccC
Confidence 22100000 00012677888888764333333 356664 49999998874 44443
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=1e-14 Score=146.18 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=41.6
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCC
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 372 (626)
+|++|+++++.+..+| .+..+.+|++|++++| .+..+|. +.++++|++|++++|.+.
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLK 98 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCC
Confidence 5777777777777776 5777777777777777 5677776 677777777777777643
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.54 E-value=6.4e-14 Score=160.25 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=68.0
Q ss_pred Cccccccccccccccc-chHHhhhcccchhcccCCCCccc-cch-hhhcCCCcccEEEccCCCCCcccCCCCcccccCCc
Q 006902 311 SSLELLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNK-IPR-QLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGG 387 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~-lP~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 387 (626)
.+|++|+|++|.+..+ |..++.+.+|++|+|++| .+.. +|. ..+.+|++|++|++++|.+.+..
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~------------ 139 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY------------ 139 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC------------
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccc------------
Confidence 4899999999999877 889999999999999999 4654 444 34789999999999999876422
Q ss_pred cchhHHhhccCCCceEEEEEec
Q 006902 388 EVLIQELLGLKYLEVLELTLGS 409 (626)
Q Consensus 388 ~~~~~~l~~L~~L~~L~i~~~~ 409 (626)
....+++|++|+.|++..+.
T Consensus 140 --~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 140 --LHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp --CCGGGGTCSSCCEEEEESSC
T ss_pred --cchhHhhCCCCCEEECCCCc
Confidence 22457889999999888654
No 63
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=1.9e-15 Score=153.72 Aligned_cols=226 Identities=16% Similarity=0.090 Sum_probs=162.9
Q ss_pred cccccccccccccccchHHhhh--cccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 312 SLELLDISHTYIQELPEELKLL--VNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L--~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.++.++++++.+. |..+..+ .++++|+++++ .+...+.. +.++++|++|++.+|.+. ...
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~--------------~~~ 109 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIE--------------VST 109 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEEC--------------HHH
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcC--------------HHH
Confidence 4677889888776 6778888 89999999999 57777776 789999999999998753 223
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceE-ee
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEEL-KI 468 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l-~~ 468 (626)
.+..+..+++|+.|++..+.... ........+++|+.|++.++...........+..+++|++|++++|..+... .+
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCH--HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 66778899999999988665432 1222222378999999999854332101123667899999999998555421 13
Q ss_pred ccccccccccCccccC-ccCEEEEeCCC-CCc--ccc-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCC
Q 006902 469 DYTEIVRKRREPFVFR-SLHHVTIYSCT-KLK--DST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFE 543 (626)
Q Consensus 469 ~~~~~~~~~~~~~~l~-~L~~L~L~~c~-~l~--~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp 543 (626)
.... .++ +|++|++++|. .+. .++ .+..+|+|+.|+|++|..+...... .+..++
T Consensus 188 ~~~~---------~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-----------~l~~l~ 247 (336)
T 2ast_B 188 VAVA---------HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-----------EFFQLN 247 (336)
T ss_dssp HHHH---------HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-----------GGGGCT
T ss_pred HHHH---------hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-----------HHhCCC
Confidence 3333 688 99999999985 343 344 3678999999999999755432221 456789
Q ss_pred ccceeecCCcccccccc-CCCCCCCCccEEEecCC
Q 006902 544 NLQMLHLSYLPILKSIY-WKPLPFTHLKEMEVSGC 577 (626)
Q Consensus 544 ~L~~L~l~~~~~l~~i~-~~~~~lp~L~~L~i~~C 577 (626)
+|++|++++|..+..-. .....+|+|++|++.+|
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99999999997543321 13457999999999999
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=3.5e-15 Score=157.85 Aligned_cols=241 Identities=14% Similarity=0.037 Sum_probs=120.4
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcc-------------cEEEccCCCCCcccCC-
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRL-------------RVLRMLGTGPFSFDEA- 377 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L-------------~~L~l~~~~~~~~~~~- 377 (626)
+|++|+++++.+..+|.++++|++|++|++++|.....+|.+ ++++.+| ++|++.+|.+.+++..
T Consensus 12 ~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~ 90 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELP 90 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCC
T ss_pred cchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCCCCc
Confidence 788999999999999999999999999999998544478887 8888875 8888888876653221
Q ss_pred CCccc--ccCCccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccce
Q 006902 378 PEDSV--LFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNEL 455 (626)
Q Consensus 378 ~~~~~--~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L 455 (626)
..... +.+.....+. ..+++|+.|+++.+....+. ...++|+.|++.++.-. .+ ..+..+++|++|
T Consensus 91 ~~L~~L~l~~n~l~~lp--~~~~~L~~L~l~~n~l~~l~------~~~~~L~~L~L~~n~l~-~l---p~~~~l~~L~~L 158 (454)
T 1jl5_A 91 PHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKALS------DLPPLLEYLGVSNNQLE-KL---PELQNSSFLKII 158 (454)
T ss_dssp TTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSCCC------SCCTTCCEEECCSSCCS-SC---CCCTTCTTCCEE
T ss_pred CCCCEEEccCCcCCccc--cccCCCcEEECCCCccCccc------CCCCCCCEEECcCCCCC-CC---cccCCCCCCCEE
Confidence 11111 1111111000 11356666666554433221 11257888888777544 23 257778888888
Q ss_pred eecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCc-------
Q 006902 456 WIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGK------- 528 (626)
Q Consensus 456 ~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~------- 528 (626)
+++++.- +.+ +. .+++|++|++++| .+..+|.++.+++|+.|++++|. +..++....
T Consensus 159 ~l~~N~l-~~l-p~------------~~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l 222 (454)
T 1jl5_A 159 DVDNNSL-KKL-PD------------LPPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVA 222 (454)
T ss_dssp ECCSSCC-SCC-CC------------CCTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEEC
T ss_pred ECCCCcC-ccc-CC------------CcccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEEC
Confidence 8887642 221 11 2357777777776 45556667777777777777763 333322000
Q ss_pred -cccccccCCCCCcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCC
Q 006902 529 -IAETPEMMGHISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDS 587 (626)
Q Consensus 529 -~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 587 (626)
......+. .++.+++|++|+++++ .+..++. .+++|++|++.+| ++..+|..+
T Consensus 223 ~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~~~ 276 (454)
T 1jl5_A 223 GNNILEELP-ELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPELP 276 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCCCC
T ss_pred cCCcCCccc-ccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCccc
Confidence 00000111 2445566666666653 3444432 2456666666665 455555543
No 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.54 E-value=1.5e-13 Score=150.14 Aligned_cols=81 Identities=22% Similarity=0.267 Sum_probs=48.3
Q ss_pred ccccccccccccccc-chHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
+|++|+|++|.+..+ |..++.+.+|++|++++| .+..+|.. .+++|++|++++|.+..+ ..
T Consensus 77 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~Ls~N~l~~l--------------~~ 138 (562)
T 3a79_B 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC---PMASLRHLDLSFNDFDVL--------------PV 138 (562)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC---CCTTCSEEECCSSCCSBC--------------CC
T ss_pred CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc---ccccCCEEECCCCCcccc--------------Cc
Confidence 566666666665555 445566666666666666 35556552 556666666666654432 22
Q ss_pred hHHhhccCCCceEEEEEech
Q 006902 391 IQELLGLKYLEVLELTLGSY 410 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~ 410 (626)
+..++++++|+.|++..+..
T Consensus 139 p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 139 CKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CGGGGGCTTCCEEEEECSBC
T ss_pred hHhhcccCcccEEecCCCcc
Confidence 34677888888888876544
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=3.3e-14 Score=137.00 Aligned_cols=201 Identities=17% Similarity=0.125 Sum_probs=142.9
Q ss_pred cccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCC-CCcccCCCCcccccCCccchhHHhhccCCC
Q 006902 322 YIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTG-PFSFDEAPEDSVLFGGGEVLIQELLGLKYL 400 (626)
Q Consensus 322 ~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 400 (626)
+++++|. +.. +|++|++++| .++.+|...+.++++|++|++.+|. +..++ ...+.++++|
T Consensus 22 ~l~~ip~-~~~--~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~---------------~~~f~~l~~L 82 (239)
T 2xwt_C 22 DIQRIPS-LPP--STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLE---------------SHSFYNLSKV 82 (239)
T ss_dssp SCSSCCC-CCT--TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEEC---------------TTTEESCTTC
T ss_pred CccccCC-CCC--cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeC---------------HhHcCCCcCC
Confidence 4778887 443 8999999999 6899988658899999999999986 44211 1234566666
Q ss_pred ceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccccccccCc
Q 006902 401 EVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREP 480 (626)
Q Consensus 401 ~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 480 (626)
+.|.+..+ .....+ ....+..+++|+.|+++++.-.. + +. +.
T Consensus 83 ~~L~l~~~--------------------------n~l~~i-~~~~f~~l~~L~~L~l~~n~l~~-l-p~-~~-------- 124 (239)
T 2xwt_C 83 THIEIRNT--------------------------RNLTYI-DPDALKELPLLKFLGIFNTGLKM-F-PD-LT-------- 124 (239)
T ss_dssp CEEEEEEE--------------------------TTCCEE-CTTSEECCTTCCEEEEEEECCCS-C-CC-CT--------
T ss_pred cEEECCCC--------------------------CCeeEc-CHHHhCCCCCCCEEeCCCCCCcc-c-cc-cc--------
Confidence 66665531 111122 22356678999999999875433 2 33 22
Q ss_pred cccCccC---EEEEeCCCCCccccc--cccCCCcc-EEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcc
Q 006902 481 FVFRSLH---HVTIYSCTKLKDSTF--LVFAPNLK-SLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLP 554 (626)
Q Consensus 481 ~~l~~L~---~L~L~~c~~l~~l~~--l~~L~~L~-~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 554 (626)
.+++|+ +|++++|..++.++. +..+++|+ .|+++++ .+..++.. .... ++|++|++++++
T Consensus 125 -~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~-----------~~~~-~~L~~L~L~~n~ 190 (239)
T 2xwt_C 125 -KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGY-----------AFNG-TKLDAVYLNKNK 190 (239)
T ss_dssp -TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTT-----------TTTT-CEEEEEECTTCT
T ss_pred -cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHh-----------hcCC-CCCCEEEcCCCC
Confidence 566776 999999867878774 88999999 9999987 45566552 2233 799999999987
Q ss_pred ccccccCC-CCCC-CCccEEEecCCCCCCCCCCCCCcCcCcc
Q 006902 555 ILKSIYWK-PLPF-THLKEMEVSGCNQLEKHPLDSNSAKERK 594 (626)
Q Consensus 555 ~l~~i~~~-~~~l-p~L~~L~i~~C~~L~~lP~~~~~~l~~l 594 (626)
.++.++.. ...+ ++|++|+++++ +++.+|......++.|
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L 231 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKEL 231 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEE
T ss_pred CcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCcee
Confidence 78888654 5667 99999999995 7899998643334444
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.53 E-value=1.4e-14 Score=145.99 Aligned_cols=236 Identities=13% Similarity=0.093 Sum_probs=173.9
Q ss_pred cccccccccccccccchHH-hhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELPEEL-KLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i-~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
.++.++++.+.+...|..+ ..+.+|++|++++| .+..++...+.++++|++|++.+|.+.+ .
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----------------~ 73 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYE----------------T 73 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEE----------------E
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCc----------------c
Confidence 4566777777776655444 56679999999999 6888876559999999999999998642 1
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
+ .+..+++|+.|+++.+....+ ...++|+.|++.++.-.. . ....+++|+.|+++++.... +.+..
T Consensus 74 ~-~~~~l~~L~~L~Ls~n~l~~l-------~~~~~L~~L~l~~n~l~~-~----~~~~~~~L~~L~l~~N~l~~-~~~~~ 139 (317)
T 3o53_A 74 L-DLESLSTLRTLDLNNNYVQEL-------LVGPSIETLHAANNNISR-V----SCSRGQGKKNIYLANNKITM-LRDLD 139 (317)
T ss_dssp E-EETTCTTCCEEECCSSEEEEE-------EECTTCCEEECCSSCCSE-E----EECCCSSCEEEECCSSCCCS-GGGBC
T ss_pred h-hhhhcCCCCEEECcCCccccc-------cCCCCcCEEECCCCccCC-c----CccccCCCCEEECCCCCCCC-ccchh
Confidence 1 288899999999876654332 124789999999876442 2 12346789999999865433 33334
Q ss_pred ccccccccCccccCccCEEEEeCCCCCcccc--cc-ccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccce
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FL-VFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQM 547 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l-~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~ 547 (626)
+. .+++|++|++++| .+..++ .+ ..+++|+.|++++|. +..++. ...+++|++
T Consensus 140 ~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------------~~~l~~L~~ 195 (317)
T 3o53_A 140 EG---------CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-------------QVVFAKLKT 195 (317)
T ss_dssp TG---------GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-------------CCCCTTCCE
T ss_pred hh---------ccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccccc-------------ccccccCCE
Confidence 43 7899999999997 444443 24 579999999999984 555533 235899999
Q ss_pred eecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEeccccccc
Q 006902 548 LHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQWWN 605 (626)
Q Consensus 548 L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~~ 605 (626)
|+++++ .+..++.....+++|++|++++| +++.+|..... ++.|+..+....-|.
T Consensus 196 L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 196 LDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRF-SQNLEHFDLRGNGFH 250 (317)
T ss_dssp EECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCC-CTTCCEEECTTCCCB
T ss_pred EECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhc-CCCCCEEEccCCCcc
Confidence 999985 67778777888999999999998 78889887644 677777776544443
No 68
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=6.3e-14 Score=143.27 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=25.4
Q ss_pred ccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCC
Q 006902 317 DISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGP 371 (626)
Q Consensus 317 ~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 371 (626)
+.++++++++|..+ ..++++|+|++| .++.||.+.+.+|++|++|++++|.+
T Consensus 15 ~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 15 LCQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDV 66 (350)
T ss_dssp EEESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTT
T ss_pred EecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCC
Confidence 33444455555443 234555555555 35555544345555555555555543
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.52 E-value=1.7e-14 Score=143.16 Aligned_cols=202 Identities=18% Similarity=0.203 Sum_probs=151.7
Q ss_pred Ccccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCC-CCcccCCCCcccccCCcc
Q 006902 311 SSLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTG-PFSFDEAPEDSVLFGGGE 388 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~ 388 (626)
.+|++|+|+++.+..+| ..++.+.+|++|++++| .+..++...+.++++|++|++.+|. ...
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~--------------- 95 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRS--------------- 95 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCC---------------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccc---------------
Confidence 37999999999999887 56899999999999999 5888844449999999999999996 432
Q ss_pred chhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEee
Q 006902 389 VLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKI 468 (626)
Q Consensus 389 ~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~ 468 (626)
..+..+..+++|+.|.+..+....+. ......+++|+.|++.++.-. .+ ....+..+++|+.|+++++. +..+.+
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~ 170 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQ-AL-PDDTFRDLGNLTHLFLHGNR-ISSVPE 170 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCC-CC-CTTTTTTCTTCCEEECCSSC-CCEECT
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEEC--HhHhhCCcCCCEEECCCCccc-cc-CHhHhccCCCccEEECCCCc-ccccCH
Confidence 22345788999999998765543321 122334688999999987644 22 22357788999999999864 444444
Q ss_pred ccccccccccCccccCccCEEEEeCCCCCccc-c-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccc
Q 006902 469 DYTEIVRKRREPFVFRSLHHVTIYSCTKLKDS-T-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQ 546 (626)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~ 546 (626)
.++. .+++|++|++++|. +..+ + .++.+++|+.|+|+++ .+..++.. .+..+++|+
T Consensus 171 ~~~~---------~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-----------~~~~l~~L~ 228 (285)
T 1ozn_A 171 RAFR---------GLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE-----------ALAPLRALQ 228 (285)
T ss_dssp TTTT---------TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCHH-----------HHTTCTTCC
T ss_pred HHhc---------CccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCCHH-----------HcccCcccC
Confidence 4454 78999999999975 4444 4 4889999999999998 45555432 356789999
Q ss_pred eeecCCccc
Q 006902 547 MLHLSYLPI 555 (626)
Q Consensus 547 ~L~l~~~~~ 555 (626)
+|++++++-
T Consensus 229 ~L~l~~N~~ 237 (285)
T 1ozn_A 229 YLRLNDNPW 237 (285)
T ss_dssp EEECCSSCE
T ss_pred EEeccCCCc
Confidence 999998753
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=1.9e-14 Score=144.62 Aligned_cols=247 Identities=18% Similarity=0.136 Sum_probs=171.7
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCcc--ccchhhhc-------CCCcccEEEccCCCCCcccCCCCccc
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLN--KIPRQLIS-------KFSRLRVLRMLGTGPFSFDEAPEDSV 382 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~--~lP~~~i~-------~L~~L~~L~l~~~~~~~~~~~~~~~~ 382 (626)
.|++|+++++.+ .+|..+... |++|+++++ .+. .+|.. +. ++++|++|++.+|.+.+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n-~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~--------- 109 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRL-TVRAARIPSR-ILFGALRVLGISGLQELTLENLEVTG--------- 109 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEE-EEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCBS---------
T ss_pred CceeEeeccccc-ccHHHHHHH--Hhhcccccc-cccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcccc---------
Confidence 688999999999 899888776 999999998 464 36665 54 79999999999988653
Q ss_pred ccCCccchhHHh--hccCCCceEEEEEechhhHHHHhhcc--ccccceeEEEEeccCCCccccccccccccccccceeec
Q 006902 383 LFGGGEVLIQEL--LGLKYLEVLELTLGSYHALQILLSSN--KLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIY 458 (626)
Q Consensus 383 ~~~~~~~~~~~l--~~L~~L~~L~i~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~ 458 (626)
..+..+ ..+++|+.|+++.+............ ...++|+.|++.++.-. .. ....+..+++|+.|+++
T Consensus 110 ------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~-~~-~~~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 110 ------TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NF-SCEQVRVFPALSTLDLS 181 (312)
T ss_dssp ------CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCC-CC-CTTTCCCCSSCCEEECC
T ss_pred ------hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCc-cc-hHHHhccCCCCCEEECC
Confidence 222333 78899999999877654431111110 01378999999988654 22 22467889999999999
Q ss_pred ccCCcceE-eeccccccccccCccccCccCEEEEeCCCCCcccc----c-cccCCCccEEEEeccCccccccccCccccc
Q 006902 459 RGFELEEL-KIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST----F-LVFAPNLKSLTLFDCGAMEEIISVGKIAET 532 (626)
Q Consensus 459 ~~~~l~~l-~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~----~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~ 532 (626)
++...... .+.... ...+++|++|++++| .+..++ . +..+++|+.|+|+++. +...+...
T Consensus 182 ~N~l~~~~~~~~~~~-------~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~----- 247 (312)
T 1wwl_A 182 DNPELGERGLISALC-------PLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAP----- 247 (312)
T ss_dssp SCTTCHHHHHHHHSC-------TTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCS-----
T ss_pred CCCcCcchHHHHHHH-------hccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchh-----
Confidence 87644321 011110 026899999999997 455433 2 3578999999999884 44433110
Q ss_pred cccCCCCCcCCccceeecCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEeccccccc
Q 006902 533 PEMMGHISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQWWN 605 (626)
Q Consensus 533 ~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~~ 605 (626)
....+++|++|+++++ .++++|.... ++|++|+++++ +++.+|. . ..+++|+..+....-+.
T Consensus 248 -----~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~-~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 248 -----SCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS-P-DELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -----CCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC-T-TTSCEEEEEECTTCTTT
T ss_pred -----hhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh-H-hhCCCCCEEeccCCCCC
Confidence 3345799999999985 5677775544 89999999996 7888877 3 34788888876655443
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=6.3e-14 Score=137.73 Aligned_cols=197 Identities=19% Similarity=0.249 Sum_probs=122.7
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
..++++++++.++.+|..+. .+|++|++++| .+..+|...+.++++|++|++.+|.+..++.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~--------------- 78 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA--------------- 78 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCT---------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeCh---------------
Confidence 45678888888888887665 57889999988 5888887558889999999998887653211
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
..+..+++|+.|.+..+... .+ ....+..+++|+.|.++++. +..+.+..+
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~---------------------------~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 129 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQ---------------------------AL-PIGVFDQLVNLAELRLDRNQ-LKSLPPRVF 129 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCC---------------------------CC-CTTTTTTCSSCCEEECCSSC-CCCCCTTTT
T ss_pred hhhcCCCCCCEEECCCCcCC---------------------------cC-CHhHcccccCCCEEECCCCc-cCeeCHHHh
Confidence 11355666666655432211 11 11234556667777776543 222233333
Q ss_pred cccccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceee
Q 006902 472 EIVRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLH 549 (626)
Q Consensus 472 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~ 549 (626)
. .+++|++|+|++| .+..++. ++.+++|+.|+|+++ .+..++.. .+..+++|++|+
T Consensus 130 ~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-----------~~~~l~~L~~L~ 187 (270)
T 2o6q_A 130 D---------SLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEG-----------AFDKLTELKTLK 187 (270)
T ss_dssp T---------TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-----------TTTTCTTCCEEE
T ss_pred C---------cCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-cCcEeChh-----------HhccCCCcCEEE
Confidence 3 5677777777775 4445553 667777777777766 34444331 345567777777
Q ss_pred cCCccccccccCC-CCCCCCccEEEecCCC
Q 006902 550 LSYLPILKSIYWK-PLPFTHLKEMEVSGCN 578 (626)
Q Consensus 550 l~~~~~l~~i~~~-~~~lp~L~~L~i~~C~ 578 (626)
++++ .+..++.. ...+++|+.|++.++|
T Consensus 188 L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 188 LDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 7764 55555543 4557777777777654
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=9.8e-15 Score=146.78 Aligned_cols=221 Identities=14% Similarity=0.097 Sum_probs=161.1
Q ss_pred ccccccccccccc--ccchHHh-------hhcccchhcccCCCCcc-ccchhhh--cCCCcccEEEccCCCCCcccCCCC
Q 006902 312 SLELLDISHTYIQ--ELPEELK-------LLVNLKCLNLRGTGQLN-KIPRQLI--SKFSRLRVLRMLGTGPFSFDEAPE 379 (626)
Q Consensus 312 ~Lr~L~L~~~~i~--~LP~~i~-------~L~~L~~L~l~~~~~l~-~lP~~~i--~~L~~L~~L~l~~~~~~~~~~~~~ 379 (626)
.|++|+|+++.+. .+|..+. ++.+|++|++++|. +. .+|.. + ..+++|++|++++|.+.+.
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~----- 136 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPPP-LLEATGPDLNILNLRNVSWATR----- 136 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCCC-SSSCCSCCCSEEEEESCBCSSS-----
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHHH-HHHhcCCCccEEEccCCCCcch-----
Confidence 4899999999885 4777776 79999999999994 65 78887 5 8999999999999987642
Q ss_pred cccccCCccchhHHhhcc-----CCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccc--cccccccc
Q 006902 380 DSVLFGGGEVLIQELLGL-----KYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDAT--AFADLNHL 452 (626)
Q Consensus 380 ~~~~~~~~~~~~~~l~~L-----~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~l~~~~~L 452 (626)
+..++.+ ++|+.|++..+....+. ......+++|+.|++.++.-........ .+..+++|
T Consensus 137 -----------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 203 (312)
T 1wwl_A 137 -----------DAWLAELQQWLKPGLKVLSIAQAHSLNFS--CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203 (312)
T ss_dssp -----------SSHHHHHHTTCCTTCCEEEEESCSCCCCC--TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC
T ss_pred -----------hHHHHHHHHhhcCCCcEEEeeCCCCccch--HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC
Confidence 2334444 89999999877654321 1233457899999999886432221112 33788999
Q ss_pred cceeecccCCcc--eEeeccccccccccCccccCccCEEEEeCCCCCccc--cccccCCCccEEEEeccCccccccccCc
Q 006902 453 NELWIYRGFELE--ELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDS--TFLVFAPNLKSLTLFDCGAMEEIISVGK 528 (626)
Q Consensus 453 ~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~L~~L~~L~L~~~~~l~~i~~~~~ 528 (626)
++|+++++.-.. .+....+. .+++|++|++++|...... +.+..+++|+.|+|++| .+..++.
T Consensus 204 ~~L~L~~N~l~~~~~~~~~~~~---------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~--- 270 (312)
T 1wwl_A 204 QVLALRNAGMETPSGVCSALAA---------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPK--- 270 (312)
T ss_dssp CEEECTTSCCCCHHHHHHHHHH---------TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCS---
T ss_pred CEEECCCCcCcchHHHHHHHHh---------cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhh---
Confidence 999999875331 11111122 5789999999997543333 23667899999999998 4556654
Q ss_pred cccccccCCCCCcCCccceeecCCccccccccCCCCCCCCccEEEecCCC
Q 006902 529 IAETPEMMGHISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGCN 578 (626)
Q Consensus 529 ~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C~ 578 (626)
.+ +++|++|+++++ .++.+|. ...+++|++|++.+.+
T Consensus 271 ---------~~--~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 271 ---------GL--PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ---------SC--CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ---------hc--cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 22 389999999985 6777765 7889999999999863
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=5.4e-14 Score=140.95 Aligned_cols=212 Identities=17% Similarity=0.154 Sum_probs=161.9
Q ss_pred ccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhc
Q 006902 317 DISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLG 396 (626)
Q Consensus 317 ~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 396 (626)
.+..+.+.... ....+.+|++|++++| .+..+|. +..+++|++|++++|.+.. .+. +..
T Consensus 25 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n~i~~----------------~~~-~~~ 83 (308)
T 1h6u_A 25 AAGKSNVTDTV-TQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQITD----------------LAP-LKN 83 (308)
T ss_dssp HTTCSSTTSEE-CHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCC----------------CGG-GTT
T ss_pred HhCCCCcCcee-cHHHcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCCcCCC----------------Chh-Hcc
Confidence 34444554432 3567999999999999 6899984 8999999999999998653 222 889
Q ss_pred cCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecccccccc
Q 006902 397 LKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRK 476 (626)
Q Consensus 397 L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 476 (626)
+++|+.|++..+....+. ....+++|+.|++.++.-.. ...+..+++|+.|+++++... .+ +. +
T Consensus 84 l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~----~~~l~~l~~L~~L~l~~n~l~-~~-~~-l----- 147 (308)
T 1h6u_A 84 LTKITELELSGNPLKNVS----AIAGLQSIKTLDLTSTQITD----VTPLAGLSNLQVLYLDLNQIT-NI-SP-L----- 147 (308)
T ss_dssp CCSCCEEECCSCCCSCCG----GGTTCTTCCEEECTTSCCCC----CGGGTTCTTCCEEECCSSCCC-CC-GG-G-----
T ss_pred CCCCCEEEccCCcCCCch----hhcCCCCCCEEECCCCCCCC----chhhcCCCCCCEEECCCCccC-cC-cc-c-----
Confidence 999999999877665543 23347899999999886442 235888999999999987533 22 11 3
Q ss_pred ccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcccc
Q 006902 477 RREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPIL 556 (626)
Q Consensus 477 ~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l 556 (626)
..+++|+.|++++| .+..++++..+++|+.|++++| .+..++. +..+++|++|+++++ .+
T Consensus 148 ----~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-------------l~~l~~L~~L~L~~N-~l 207 (308)
T 1h6u_A 148 ----AGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDN-KISDISP-------------LASLPNLIEVHLKNN-QI 207 (308)
T ss_dssp ----GGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG-------------GGGCTTCCEEECTTS-CC
T ss_pred ----cCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCC-ccCcChh-------------hcCCCCCCEEEccCC-cc
Confidence 37899999999997 6777888999999999999988 4554432 467899999999986 56
Q ss_pred ccccCCCCCCCCccEEEecCCCCCCCCCCCC
Q 006902 557 KSIYWKPLPFTHLKEMEVSGCNQLEKHPLDS 587 (626)
Q Consensus 557 ~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 587 (626)
..++ ....+++|++|++.+|+ +...|...
T Consensus 208 ~~~~-~l~~l~~L~~L~l~~N~-i~~~~~~~ 236 (308)
T 1h6u_A 208 SDVS-PLANTSNLFIVTLTNQT-ITNQPVFY 236 (308)
T ss_dssp CBCG-GGTTCTTCCEEEEEEEE-EECCCEEC
T ss_pred Cccc-cccCCCCCCEEEccCCe-eecCCeee
Confidence 6655 36789999999999974 67766543
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=4.5e-14 Score=139.33 Aligned_cols=198 Identities=22% Similarity=0.162 Sum_probs=122.4
Q ss_pred cccccccccccccccch-HHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELPE-ELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
.|++|+++++.+..+|. .++++.+|++|++++| .+..+|...+.++++|++|++.+|.+.++ .
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~ 92 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSL---------------A 92 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEE---------------C
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCcc---------------C
Confidence 57778888887777765 6777788888888887 57777765477788888888887765431 1
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
+..+.++++|+.|.+ .++... .. ....+..+++|+.|+++++.....-.+.+
T Consensus 93 ~~~~~~l~~L~~L~l--------------------------~~n~l~-~~-~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 93 LGAFSGLSSLQKLVA--------------------------VETNLA-SL-ENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp TTTTTTCTTCCEEEC--------------------------TTSCCC-CS-TTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred hhhhcCCccccEEEC--------------------------CCCCcc-cc-CchhcccCCCCCEEECcCCccceecCchh
Confidence 123445555555543 333221 11 11135667788888887654322102444
Q ss_pred ccccccccCccccCccCEEEEeCCCCCcccc--ccccCCCcc----EEEEeccCccccccccCccccccccCCCCCcCCc
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLVFAPNLK----SLTLFDCGAMEEIISVGKIAETPEMMGHISPFEN 544 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~----~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~ 544 (626)
+. .+++|++|++++| .+..++ .+..+++|+ .|+++++ .+..++. .....++
T Consensus 145 ~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~------------~~~~~~~ 201 (276)
T 2z62_A 145 FS---------NLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQP------------GAFKEIR 201 (276)
T ss_dssp GG---------GCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECT------------TSSCSCC
T ss_pred hc---------cCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCC-cccccCc------------cccCCCc
Confidence 44 6788888888886 344443 244444554 7777776 4454543 2233457
Q ss_pred cceeecCCccccccccCC-CCCCCCccEEEecCC
Q 006902 545 LQMLHLSYLPILKSIYWK-PLPFTHLKEMEVSGC 577 (626)
Q Consensus 545 L~~L~l~~~~~l~~i~~~-~~~lp~L~~L~i~~C 577 (626)
|++|+++++ .++.++.. ...+++|++|++.++
T Consensus 202 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 202 LKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp EEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 888888875 46666654 356888888888854
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=2.8e-14 Score=152.46 Aligned_cols=224 Identities=15% Similarity=0.066 Sum_probs=166.3
Q ss_pred cccchHHhhhc----ccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCC
Q 006902 324 QELPEELKLLV----NLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKY 399 (626)
Q Consensus 324 ~~LP~~i~~L~----~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 399 (626)
..+|..+..+. +|++|+|++| .+..+|...+.++++|++|++++|.+.+ .+ .+..+++
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------------~~-~l~~l~~ 81 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYE----------------TL-DLESLST 81 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEE----------------EE-ECTTCTT
T ss_pred hhhHHHHHHhcccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCC----------------Cc-ccccCCC
Confidence 46777777766 8999999999 6888875559999999999999998642 11 1889999
Q ss_pred CceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccccccccC
Q 006902 400 LEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRRE 479 (626)
Q Consensus 400 L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 479 (626)
|+.|+++.+....+ ...++|+.|++.++.-.... ...+++|+.|+++++.... +.+..+.
T Consensus 82 L~~L~Ls~N~l~~l-------~~~~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~L~~N~l~~-~~~~~~~------- 141 (487)
T 3oja_A 82 LRTLDLNNNYVQEL-------LVGPSIETLHAANNNISRVS-----CSRGQGKKNIYLANNKITM-LRDLDEG------- 141 (487)
T ss_dssp CCEEECCSSEEEEE-------EECTTCCEEECCSSCCCCEE-----ECCCSSCEEEECCSSCCCS-GGGBCGG-------
T ss_pred CCEEEecCCcCCCC-------CCCCCcCEEECcCCcCCCCC-----ccccCCCCEEECCCCCCCC-CCchhhc-------
Confidence 99999886654332 12478999999988654222 2346789999999875433 3333443
Q ss_pred ccccCccCEEEEeCCCCCcccc-ccc-cCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccc
Q 006902 480 PFVFRSLHHVTIYSCTKLKDST-FLV-FAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILK 557 (626)
Q Consensus 480 ~~~l~~L~~L~L~~c~~l~~l~-~l~-~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~ 557 (626)
.+++|+.|+|++|......| .+. .+++|+.|+|++|. +..++. ...+++|++|+++++ .+.
T Consensus 142 --~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-------------~~~l~~L~~L~Ls~N-~l~ 204 (487)
T 3oja_A 142 --CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-------------QVVFAKLKTLDLSSN-KLA 204 (487)
T ss_dssp --GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-------------CCCCTTCCEEECCSS-CCC
T ss_pred --CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-------------cccCCCCCEEECCCC-CCC
Confidence 78999999999974444344 354 79999999999984 555533 345899999999985 677
Q ss_pred cccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEecccccc
Q 006902 558 SIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQWW 604 (626)
Q Consensus 558 ~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~ 604 (626)
.++.....+++|+.|++++| .|..+|..... ++.|+..+....-|
T Consensus 205 ~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~-l~~L~~L~l~~N~l 249 (487)
T 3oja_A 205 FMGPEFQSAAGVTWISLRNN-KLVLIEKALRF-SQNLEHFDLRGNGF 249 (487)
T ss_dssp EECGGGGGGTTCSEEECTTS-CCCEECTTCCC-CTTCCEEECTTCCB
T ss_pred CCCHhHcCCCCccEEEecCC-cCcccchhhcc-CCCCCEEEcCCCCC
Confidence 78777888999999999996 68888887544 56677776554443
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=6.2e-14 Score=143.32 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=160.2
Q ss_pred Ccccccccccccccccch-HHhhhcccchhcccCCCCccccchhhhcCCCcccEE-EccCCCCCcccCCCCcccccCCcc
Q 006902 311 SSLELLDISHTYIQELPE-ELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVL-RMLGTGPFSFDEAPEDSVLFGGGE 388 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L-~l~~~~~~~~~~~~~~~~~~~~~~ 388 (626)
.++++|+|++|.|+.+|. .+.+|.+|++|+|++|...+.+|.+++.+|++|+.+ .+.++.+..+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-------------- 95 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-------------- 95 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE--------------
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc--------------
Confidence 378999999999999996 589999999999999954577888768899998865 4455555432
Q ss_pred chhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCcccccccccccc-ccccceeecccCCcceEe
Q 006902 389 VLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADL-NHLNELWIYRGFELEELK 467 (626)
Q Consensus 389 ~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~l~~l~ 467 (626)
.+..+..+++|+.|.+..+....+..... .....+..|.+.++.....+ ....+..+ ..|+.|.++++. ++.+.
T Consensus 96 -~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l-~~~~f~~~~~~l~~L~L~~N~-i~~i~ 170 (350)
T 4ay9_X 96 -NPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTI-ERNSFVGLSFESVILWLNKNG-IQEIH 170 (350)
T ss_dssp -CTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCEE-CTTSSTTSBSSCEEEECCSSC-CCEEC
T ss_pred -CchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccccc-cccchhhcchhhhhhcccccc-ccCCC
Confidence 23347889999999998776544322111 11345677777766544444 22234444 367888888643 44443
Q ss_pred eccccccccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCcc
Q 006902 468 IDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENL 545 (626)
Q Consensus 468 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L 545 (626)
...+ ...+|+.|.+.+++.++.+|. +..+++|+.|+|+++ .++.++. ..|.+|
T Consensus 171 ~~~f----------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~--------------~~~~~L 225 (350)
T 4ay9_X 171 NSAF----------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS--------------YGLENL 225 (350)
T ss_dssp TTSS----------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS--------------SSCTTC
T ss_pred hhhc----------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh--------------hhhccc
Confidence 3333 356889999988888988884 788999999999987 5776654 568889
Q ss_pred ceeecCCccccccccCCCCCCCCccEEEecC
Q 006902 546 QMLHLSYLPILKSIYWKPLPFTHLKEMEVSG 576 (626)
Q Consensus 546 ~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~ 576 (626)
+.|.+.++.+++++| ....+++|+.+++.+
T Consensus 226 ~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 226 KKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 999988889999888 467789999998864
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.48 E-value=1.2e-13 Score=150.92 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=60.7
Q ss_pred CccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccCCC
Q 006902 484 RSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYWKP 563 (626)
Q Consensus 484 ~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~~ 563 (626)
++|+.|.+++| .+..+|. .+++|+.|+|++| .+..++ ..+++|++|+++++ .+..++.
T Consensus 201 ~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N-~L~~lp---------------~~l~~L~~L~Ls~N-~L~~lp~-- 258 (622)
T 3g06_A 201 SELYKLWAYNN-RLTSLPA--LPSGLKELIVSGN-RLTSLP---------------VLPSELKELMVSGN-RLTSLPM-- 258 (622)
T ss_dssp TTCCEEECCSS-CCSSCCC--CCTTCCEEECCSS-CCSCCC---------------CCCTTCCEEECCSS-CCSCCCC--
T ss_pred chhhEEECcCC-cccccCC--CCCCCCEEEccCC-ccCcCC---------------CCCCcCcEEECCCC-CCCcCCc--
Confidence 44555555543 3333332 2356666666655 333332 34688888888885 6777764
Q ss_pred CCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEecccccccc
Q 006902 564 LPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQWWNR 606 (626)
Q Consensus 564 ~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~~~ 606 (626)
.+++|++|++++| +|+.+|..+.. +++|+..+....-+.+
T Consensus 259 -~~~~L~~L~Ls~N-~L~~lp~~l~~-l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 259 -LPSGLLSLSVYRN-QLTRLPESLIH-LSSETTVNLEGNPLSE 298 (622)
T ss_dssp -CCTTCCEEECCSS-CCCSCCGGGGG-SCTTCEEECCSCCCCH
T ss_pred -ccccCcEEeCCCC-CCCcCCHHHhh-ccccCEEEecCCCCCC
Confidence 6788899999887 77888876543 6777777765554443
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=1.4e-14 Score=150.28 Aligned_cols=239 Identities=19% Similarity=0.125 Sum_probs=163.4
Q ss_pred Ccccccccccccccc-----cchHHhhhcccchhcccCCCCcc----ccchhh------hcCCCcccEEEccCCCCCccc
Q 006902 311 SSLELLDISHTYIQE-----LPEELKLLVNLKCLNLRGTGQLN----KIPRQL------ISKFSRLRVLRMLGTGPFSFD 375 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~-----LP~~i~~L~~L~~L~l~~~~~l~----~lP~~~------i~~L~~L~~L~l~~~~~~~~~ 375 (626)
.+|++|+|++|.+.. ++..+..+++|++|++++| .+. .+|.++ +.++++|++|++++|.+....
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 479999999998764 4555778999999999998 333 345551 378999999999999864200
Q ss_pred CCCCcccccCCccchhHHhhccCCCceEEEEEechhh--HHHHhhccccc---------cceeEEEEeccCCC-cccccc
Q 006902 376 EAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHA--LQILLSSNKLK---------SCIRSLFLWLAGDA-TSIVDA 443 (626)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~--~~~l~~~~~~~---------~~L~~L~l~~~~~~-~~~~~~ 443 (626)
....+..+.++++|+.|+++.+.... ...+......+ ++|+.|++.++.-. ..++.+
T Consensus 111 -----------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 111 -----------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp -----------HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred -----------HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 11356688999999999998776432 22333332223 79999999988654 222111
Q ss_pred -ccccccccccceeecccCCcce----EeeccccccccccCccccCccCEEEEeCCCCC----cccc-ccccCCCccEEE
Q 006902 444 -TAFADLNHLNELWIYRGFELEE----LKIDYTEIVRKRREPFVFRSLHHVTIYSCTKL----KDST-FLVFAPNLKSLT 513 (626)
Q Consensus 444 -~~l~~~~~L~~L~l~~~~~l~~----l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l----~~l~-~l~~L~~L~~L~ 513 (626)
..+..+++|++|.+++|..... +.+.++ ..+++|++|+|++|..- ..++ .+..+++|+.|+
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l---------~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL---------AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG---------GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh---------hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 2566788999999998753310 122233 37899999999998532 4455 478999999999
Q ss_pred EeccCccccccccCccccccccCCCC--CcCCccceeecCCccccc----cccCCC-CCCCCccEEEecCCC
Q 006902 514 LFDCGAMEEIISVGKIAETPEMMGHI--SPFENLQMLHLSYLPILK----SIYWKP-LPFTHLKEMEVSGCN 578 (626)
Q Consensus 514 L~~~~~l~~i~~~~~~~~~~~~~~~~--~~fp~L~~L~l~~~~~l~----~i~~~~-~~lp~L~~L~i~~C~ 578 (626)
|++|. +....... +...+ +.+++|++|+|++|.--. .++... ..+|+|++|++.+|+
T Consensus 251 L~~n~-i~~~~~~~-------l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 251 LNDCL-LSARGAAA-------VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTCC-CCHHHHHH-------HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCCC-CchhhHHH-------HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 99985 43331100 00022 348999999999975333 265444 458999999999984
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.46 E-value=2e-13 Score=151.30 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=53.3
Q ss_pred cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccC-CCCCCCCccEEEecCCCCCC
Q 006902 503 LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYW-KPLPFTHLKEMEVSGCNQLE 581 (626)
Q Consensus 503 l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~-~~~~lp~L~~L~i~~C~~L~ 581 (626)
+..+++|+.|+|++| .+..+++. .+..+++|++|+|+++ .+..++. ....+++|++|+++++ +|.
T Consensus 490 ~~~l~~L~~L~Ls~N-~L~~l~~~-----------~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~ 555 (635)
T 4g8a_A 490 FTELRNLTFLDLSQC-QLEQLSPT-----------AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIM 555 (635)
T ss_dssp CTTCTTCCEEECTTS-CCCEECTT-----------TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCC
T ss_pred hhhccccCEEECCCC-ccCCcChH-----------HHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCC
Confidence 455666666666665 34444332 4577889999999885 5666654 3567899999999886 677
Q ss_pred CCCCCCCcCc-CcceEEec
Q 006902 582 KHPLDSNSAK-ERKVVIRG 599 (626)
Q Consensus 582 ~lP~~~~~~l-~~l~~~~~ 599 (626)
.+|......+ .+|+..+.
T Consensus 556 ~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 556 TSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp BCCSSCTTCCCTTCCEEEC
T ss_pred CCCHHHHHhhhCcCCEEEe
Confidence 7655432223 45666653
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.45 E-value=2.3e-13 Score=133.69 Aligned_cols=177 Identities=22% Similarity=0.296 Sum_probs=125.6
Q ss_pred Ccccccccccccccccch-HHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHTYIQELPE-ELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
..+++|+|+++.+..+|. .++.+.+|++|++++| .+..+|.+++.++++|++|++.+|.+..++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-------------- 101 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALP-------------- 101 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCC--------------
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCC--------------
Confidence 379999999999999885 7899999999999999 689999886689999999999999865321
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeec
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKID 469 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~ 469 (626)
+..+..+++|+.|.+..+.. . .+ ....+..+++|+.|+++++. +..+.+.
T Consensus 102 -~~~~~~l~~L~~L~l~~n~l--------------------------~-~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 151 (270)
T 2o6q_A 102 -IGVFDQLVNLAELRLDRNQL--------------------------K-SL-PPRVFDSLTKLTYLSLGYNE-LQSLPKG 151 (270)
T ss_dssp -TTTTTTCSSCCEEECCSSCC--------------------------C-CC-CTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred -HhHcccccCCCEEECCCCcc--------------------------C-ee-CHHHhCcCcCCCEEECCCCc-CCccCHh
Confidence 12245666666665543221 1 11 11245667788888888764 3333333
Q ss_pred cccccccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccce
Q 006902 470 YTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQM 547 (626)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~ 547 (626)
.+. .+++|++|++++| .+..+++ +..+++|+.|+|+++ .+..++.. .+..+++|+.
T Consensus 152 ~~~---------~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-----------~~~~l~~L~~ 209 (270)
T 2o6q_A 152 VFD---------KLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEG-----------AFDSLEKLKM 209 (270)
T ss_dssp TTT---------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-----------TTTTCTTCCE
T ss_pred Hcc---------CCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHH-----------HhccccCCCE
Confidence 333 6788888888886 4555553 678888888888887 45555442 3466788888
Q ss_pred eecCCcc
Q 006902 548 LHLSYLP 554 (626)
Q Consensus 548 L~l~~~~ 554 (626)
|++++++
T Consensus 210 L~l~~N~ 216 (270)
T 2o6q_A 210 LQLQENP 216 (270)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 8888764
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=1.7e-13 Score=134.78 Aligned_cols=199 Identities=17% Similarity=0.174 Sum_probs=113.6
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+|+.|+++++.+..+| .++.+.+|++|++++| .+..+|. +.++++|++|++.+|.+.++ .+
T Consensus 42 ~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n~l~~~---------------~~ 102 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-KLHDISA--LKELTNLTYLILTGNQLQSL---------------PN 102 (272)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECTTSCCCCC---------------CT
T ss_pred ceeeeeeCCCCccccc-ccccCCCCcEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCcc---------------Ch
Confidence 4556666666665554 3556666666666666 3555542 56666666666666654321 11
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
..+.+++ +|+.|++.++.-. .. ....+..+++|+.|+++++. +..+.+.++
T Consensus 103 ~~~~~l~--------------------------~L~~L~L~~n~l~-~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 153 (272)
T 3rfs_A 103 GVFDKLT--------------------------NLKELVLVENQLQ-SL-PDGVFDKLTNLTYLNLAHNQ-LQSLPKGVF 153 (272)
T ss_dssp TTTTTCT--------------------------TCCEEECTTSCCC-CC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred hHhcCCc--------------------------CCCEEECCCCcCC-cc-CHHHhccCCCCCEEECCCCc-cCccCHHHh
Confidence 1133444 4455555544322 11 11235667778888887763 333333333
Q ss_pred cccccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceee
Q 006902 472 EIVRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLH 549 (626)
Q Consensus 472 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~ 549 (626)
. .+++|+.|++++| .+..+++ ++.+++|+.|++++|. +..++.. .+..+++|++|+
T Consensus 154 ~---------~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-----------~~~~l~~L~~L~ 211 (272)
T 3rfs_A 154 D---------KLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDG-----------VFDRLTSLQYIW 211 (272)
T ss_dssp T---------TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT-----------TTTTCTTCCEEE
T ss_pred c---------cCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc-CCccCHH-----------HHhCCcCCCEEE
Confidence 3 6778888888886 4555554 6778888888888773 4444331 346678888888
Q ss_pred cCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCC
Q 006902 550 LSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDS 587 (626)
Q Consensus 550 l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 587 (626)
+++++-. +.+|+|+.|.++++.---.+|...
T Consensus 212 l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 212 LHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred ccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 8776422 346667777766653333455544
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=2.2e-13 Score=148.78 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=64.2
Q ss_pred ccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccC
Q 006902 482 VFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYW 561 (626)
Q Consensus 482 ~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~ 561 (626)
.+++|+.|++++| .++.+| ..+++|+.|+|++| .+..++. .+++|++|++++| .+..+|.
T Consensus 219 ~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~---------------~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 219 LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLPM---------------LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC---------------CCTTCCEEECCSS-CCCSCCG
T ss_pred CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCCc---------------ccccCcEEeCCCC-CCCcCCH
Confidence 3588999999997 666777 67799999999998 5555532 5789999999986 6778887
Q ss_pred CCCCCCCccEEEecCCCC
Q 006902 562 KPLPFTHLKEMEVSGCNQ 579 (626)
Q Consensus 562 ~~~~lp~L~~L~i~~C~~ 579 (626)
....+++|+.|++.+|+-
T Consensus 279 ~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp GGGGSCTTCEEECCSCCC
T ss_pred HHhhccccCEEEecCCCC
Confidence 788999999999999863
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=3.1e-13 Score=134.02 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=45.8
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCC
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 372 (626)
+++.+++++++++.+|..+. .+|++|++++| .+..++...+.++++|++|++.+|.+.
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 68 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELT 68 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCC
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccC
Confidence 57788888888888887664 57888888888 577776555888888888888888754
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.40 E-value=5.9e-13 Score=132.02 Aligned_cols=199 Identities=18% Similarity=0.132 Sum_probs=131.1
Q ss_pred HhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCceEEEEEec
Q 006902 330 LKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGS 409 (626)
Q Consensus 330 i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~ 409 (626)
++++.+|++++++++ .+..+|.+ +. ++|++|++.+|.+.. ..+..+..+++|+.|.+..+.
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~-~~--~~l~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~n~ 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPD-LP--KDTTILHLSENLLYT---------------FSLATLMPYTRLTQLNLDRAE 66 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSC-CC--TTCCEEECTTSCCSE---------------EEGGGGTTCTTCCEEECTTSC
T ss_pred ccccCCccEEECCCC-CCCcCCCC-CC--CCCCEEEcCCCcCCc---------------cCHHHhhcCCCCCEEECCCCc
Confidence 567788999999998 68999987 54 689999999998753 334567888999988876554
Q ss_pred hhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccccccccCccccCccCEE
Q 006902 410 YHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHV 489 (626)
Q Consensus 410 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L 489 (626)
...+.. . ..+++|+.|++.++.-. .++ ..+..+++|+.|.++++. +..+.+..+. .+++|++|
T Consensus 67 l~~~~~---~-~~l~~L~~L~Ls~N~l~-~l~--~~~~~l~~L~~L~l~~N~-l~~l~~~~~~---------~l~~L~~L 129 (290)
T 1p9a_G 67 LTKLQV---D-GTLPVLGTLDLSHNQLQ-SLP--LLGQTLPALTVLDVSFNR-LTSLPLGALR---------GLGELQEL 129 (290)
T ss_dssp CCEEEC---C-SCCTTCCEEECCSSCCS-SCC--CCTTTCTTCCEEECCSSC-CCCCCSSTTT---------TCTTCCEE
T ss_pred cCcccC---C-CCCCcCCEEECCCCcCC-cCc--hhhccCCCCCEEECCCCc-CcccCHHHHc---------CCCCCCEE
Confidence 433211 1 23567777777776443 221 245566777777777653 3333334443 56777777
Q ss_pred EEeCCCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccCCCCCCC
Q 006902 490 TIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYWKPLPFT 567 (626)
Q Consensus 490 ~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~~~~lp 567 (626)
+|++| .+..+++ +..+++|+.|+|+++ .+..++.. .+..+++|++|++++ ..++.++.....++
T Consensus 130 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-----------~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~ 195 (290)
T 1p9a_G 130 YLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAG-----------LLNGLENLDTLLLQE-NSLYTIPKGFFGSH 195 (290)
T ss_dssp ECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTT-----------TTTTCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred ECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCHH-----------HhcCcCCCCEEECCC-CcCCccChhhcccc
Confidence 77775 4555553 567777777777766 44445431 235567777777776 35667776666677
Q ss_pred CccEEEecCCC
Q 006902 568 HLKEMEVSGCN 578 (626)
Q Consensus 568 ~L~~L~i~~C~ 578 (626)
+|+.|.+.+.|
T Consensus 196 ~L~~l~L~~Np 206 (290)
T 1p9a_G 196 LLPFAFLHGNP 206 (290)
T ss_dssp CCSEEECCSCC
T ss_pred cCCeEEeCCCC
Confidence 77777777543
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=1.5e-12 Score=128.41 Aligned_cols=219 Identities=18% Similarity=0.137 Sum_probs=150.3
Q ss_pred cccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhh
Q 006902 316 LDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELL 395 (626)
Q Consensus 316 L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 395 (626)
.+..+.++..+|..+. .+|++|++++| .+..+|...+.++++|++|++.+|.+..+ .+..+.
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~ 73 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTI---------------EDGAYQ 73 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEE---------------CTTTTT
T ss_pred EEecCCCccccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCcc---------------CHHHcc
Confidence 3445556778887664 47999999999 68888875589999999999999876431 112345
Q ss_pred ccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccccc
Q 006902 396 GLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVR 475 (626)
Q Consensus 396 ~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 475 (626)
++++|+.|++ .++.-. .. ....+..+++|++|.+.++.... +.+..+.
T Consensus 74 ~l~~L~~L~L--------------------------~~n~l~-~~-~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~--- 121 (276)
T 2z62_A 74 SLSHLSTLIL--------------------------TGNPIQ-SL-ALGAFSGLSSLQKLVAVETNLAS-LENFPIG--- 121 (276)
T ss_dssp TCTTCCEEEC--------------------------TTCCCC-EE-CTTTTTTCTTCCEEECTTSCCCC-STTCCCT---
T ss_pred CCcCCCEEEC--------------------------CCCccC-cc-ChhhhcCCccccEEECCCCCccc-cCchhcc---
Confidence 5555555544 333221 11 12356788999999999765332 2222233
Q ss_pred cccCccccCccCEEEEeCCCCCc-ccc-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccc----eee
Q 006902 476 KRREPFVFRSLHHVTIYSCTKLK-DST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQ----MLH 549 (626)
Q Consensus 476 ~~~~~~~l~~L~~L~L~~c~~l~-~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~----~L~ 549 (626)
.+++|++|++++|.... .+| .++.+++|+.|++++| .+..++.. .+..+++|+ +|+
T Consensus 122 ------~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~-----------~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 122 ------HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT-----------DLRVLHQMPLLNLSLD 183 (276)
T ss_dssp ------TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGG-----------GGHHHHTCTTCCEEEE
T ss_pred ------cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHH-----------Hhhhhhhccccceeee
Confidence 78999999999974333 244 5899999999999998 45555432 234455666 888
Q ss_pred cCCccccccccCCCCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEecccccc
Q 006902 550 LSYLPILKSIYWKPLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQWW 604 (626)
Q Consensus 550 l~~~~~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~~~ 604 (626)
+++ ..+..++......++|++|++.+| +++.+|......++.|+..+....-|
T Consensus 184 ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 184 LSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred cCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcc
Confidence 887 467777766667779999999997 59999886655567777776543333
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=7.2e-13 Score=144.45 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=17.8
Q ss_pred ccCccCEEEEeCCCCCccccccccCCCccEEEEecc
Q 006902 482 VFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDC 517 (626)
Q Consensus 482 ~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~ 517 (626)
.+++|+.|+|++| .+..++++..+++|+.|+|++|
T Consensus 151 ~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 151 RLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKN 185 (605)
T ss_dssp SCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred ccCCCCEEECcCC-cCCCchhhccCCCCCEEECcCC
Confidence 4455555555554 3333333555555555555554
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=6.1e-13 Score=145.02 Aligned_cols=166 Identities=20% Similarity=0.197 Sum_probs=134.4
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+|++|++++|.+..+| .++.|.+|++|+|++| .+..+|. +.+|++|++|++.+|.+.. +
T Consensus 44 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----------------l 102 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKD-----------------L 102 (605)
T ss_dssp TCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC-----------------C
T ss_pred CCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCC-----------------C
Confidence 7899999999999997 6899999999999999 6888887 8999999999999998653 2
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
..+..|++|+.|.+..+....+.. ...+++|+.|+|.++.-. .+..+..+++|+.|.|++|... .+.+ +
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l~~----l~~l~~L~~L~Ls~N~l~----~l~~l~~l~~L~~L~Ls~N~l~-~~~~--l 171 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDING----LVHLPQLESLYLGNNKIT----DITVLSRLTKLDTLSLEDNQIS-DIVP--L 171 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCCGG----GGGCTTCSEEECCSSCCC----CCGGGGSCTTCSEEECCSSCCC-CCGG--G
T ss_pred hhhccCCCCCEEEecCCCCCCCcc----ccCCCccCEEECCCCccC----CchhhcccCCCCEEECcCCcCC-Cchh--h
Confidence 258889999999988776555422 334789999999988544 2346788999999999987533 3222 3
Q ss_pred cccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCc
Q 006902 472 EIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGA 519 (626)
Q Consensus 472 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~ 519 (626)
. .+++|+.|+|++| .+..++.+..+++|+.|+|++|..
T Consensus 172 ~---------~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 172 A---------GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp T---------TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEEE
T ss_pred c---------cCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCcC
Confidence 3 7899999999997 677788899999999999998853
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=9.2e-13 Score=130.77 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=87.4
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+|++|++++|.+..+|. ++.+.+|++|++++| .+..+|. +.++++|++|++.+|.+.. +
T Consensus 47 ~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~ 105 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKD-----------------L 105 (291)
T ss_dssp TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-----------------G
T ss_pred cccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCC-----------------C
Confidence 45666666666666643 566666666666666 4566655 5666666666666665431 1
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
..+..+++|+.| ++.++.-. .+..+..+++|+.|+++++.-.. + ..+
T Consensus 106 ~~l~~l~~L~~L--------------------------~L~~n~i~----~~~~l~~l~~L~~L~l~~n~l~~-~--~~l 152 (291)
T 1h6t_A 106 SSLKDLKKLKSL--------------------------SLEHNGIS----DINGLVHLPQLESLYLGNNKITD-I--TVL 152 (291)
T ss_dssp GGGTTCTTCCEE--------------------------ECTTSCCC----CCGGGGGCTTCCEEECCSSCCCC-C--GGG
T ss_pred hhhccCCCCCEE--------------------------ECCCCcCC----CChhhcCCCCCCEEEccCCcCCc-c--hhh
Confidence 224444555544 44444322 11234455566666665543221 1 222
Q ss_pred cccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecC
Q 006902 472 EIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLS 551 (626)
Q Consensus 472 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~ 551 (626)
. .+++|+.|++++| .+..++++..+++|+.|+|++| .+..++ .+..+++|+.|+++
T Consensus 153 ~---------~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N-~i~~l~-------------~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 153 S---------RLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKN-HISDLR-------------ALAGLKNLDVLELF 208 (291)
T ss_dssp G---------GCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCBCG-------------GGTTCTTCSEEEEE
T ss_pred c---------cCCCCCEEEccCC-ccccchhhcCCCccCEEECCCC-cCCCCh-------------hhccCCCCCEEECc
Confidence 2 4566666666664 4444444666666666666655 333332 23456666666666
Q ss_pred Cc
Q 006902 552 YL 553 (626)
Q Consensus 552 ~~ 553 (626)
++
T Consensus 209 ~n 210 (291)
T 1h6t_A 209 SQ 210 (291)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 89
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.38 E-value=2.2e-12 Score=136.41 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=73.7
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
+|++|++++|.+.++| .++.+.+|++|++++| .+..+|.. + .+|++|++.+|.+.+ +
T Consensus 132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~-~---~~L~~L~L~~n~l~~-----------------l 188 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDL-P---PSLEFIAAGNNQLEE-----------------L 188 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSCCCCC-C---TTCCEEECCSSCCSS-----------------C
T ss_pred CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-cCcccCCC-c---ccccEEECcCCcCCc-----------------C
Confidence 5666666666666666 4666666666666666 45556653 2 356666666665432 1
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccC
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGF 461 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 461 (626)
.+++++++|+.|++..+....+. ....+|+.|++.++.-. .+ ..+..+++|+.|+++++.
T Consensus 189 ~~~~~l~~L~~L~l~~N~l~~l~------~~~~~L~~L~l~~n~l~-~l---p~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 189 PELQNLPFLTAIYADNNSLKKLP------DLPLSLESIVAGNNILE-EL---PELQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCCTTCTTCCEEECCSSCCSSCC------CCCTTCCEEECCSSCCS-SC---CCCTTCTTCCEEECCSSC
T ss_pred ccccCCCCCCEEECCCCcCCcCC------CCcCcccEEECcCCcCC-cc---cccCCCCCCCEEECCCCc
Confidence 24788888888888766544321 12357888888877544 33 246677888888887753
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.38 E-value=6.8e-14 Score=145.20 Aligned_cols=263 Identities=16% Similarity=0.112 Sum_probs=171.8
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccc-----cchhhhcCCCcccEEEccCCCCCcccCCCCcccccCC
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNK-----IPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGG 386 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~-----lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 386 (626)
.|++..+....+..++..+..+.+|++|++++| .+.. ++.. +.++++|++|++.+|....+.-.. +..
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~-l~~~~~L~~L~Ls~~~~~~l~~~~-----~~~ 82 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSEN-IASKKDLEIAEFSDIFTGRVKDEI-----PEA 82 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHT-TTTCTTCCEEECCSCCTTSCGGGS-----HHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHH-HHhCCCccEEeCcccccCccccch-----hHH
Confidence 456666666678899999999999999999999 4664 4443 678999999999998644221000 000
Q ss_pred ccchhHHhhccCCCceEEEEEechh--hHHHHhhccccccceeEEEEeccCCCcccc-cc-cccccc---------cccc
Q 006902 387 GEVLIQELLGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLFLWLAGDATSIV-DA-TAFADL---------NHLN 453 (626)
Q Consensus 387 ~~~~~~~l~~L~~L~~L~i~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~~l~~~---------~~L~ 453 (626)
-......+..+++|+.|+++.+... +...++.....+++|+.|++.++.-..... .+ ..+..+ ++|+
T Consensus 83 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 83 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp HHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 0112233478999999998866533 233444444557899999999886431110 01 124444 8999
Q ss_pred ceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCc------ccc-ccccCCCccEEEEeccCcc----cc
Q 006902 454 ELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLK------DST-FLVFAPNLKSLTLFDCGAM----EE 522 (626)
Q Consensus 454 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~------~l~-~l~~L~~L~~L~L~~~~~l----~~ 522 (626)
+|.+++|.....-.+.+.. ....+++|++|++++| .+. -++ .+..+++|+.|+|++|... ..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~------~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 235 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAK------TFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235 (386)
T ss_dssp EEECCSSCCTGGGHHHHHH------HHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred EEECCCCCCCcHHHHHHHH------HHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHH
Confidence 9999987643111121100 1126789999999998 444 244 6889999999999998532 33
Q ss_pred ccccCccccccccCCCCCcCCccceeecCCcccccc-----ccCCC--CCCCCccEEEecCCCCCCC-----CCCCCCcC
Q 006902 523 IISVGKIAETPEMMGHISPFENLQMLHLSYLPILKS-----IYWKP--LPFTHLKEMEVSGCNQLEK-----HPLDSNSA 590 (626)
Q Consensus 523 i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~-----i~~~~--~~lp~L~~L~i~~C~~L~~-----lP~~~~~~ 590 (626)
++. .+..+++|++|++++|. +.. ++... +.+++|++|++++| .+.. +|......
T Consensus 236 l~~------------~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 236 LAI------------ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEK 301 (386)
T ss_dssp HHH------------HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHH
T ss_pred HHH------------HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhc
Confidence 333 45678999999999975 433 22222 34899999999998 4555 66654333
Q ss_pred cCcceEEecccc
Q 006902 591 KERKVVIRGDTQ 602 (626)
Q Consensus 591 l~~l~~~~~~~~ 602 (626)
+++|+..+....
T Consensus 302 l~~L~~L~l~~N 313 (386)
T 2ca6_A 302 MPDLLFLELNGN 313 (386)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCceEEEccCC
Confidence 456666664433
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.35 E-value=2.1e-12 Score=129.52 Aligned_cols=227 Identities=14% Similarity=0.027 Sum_probs=129.4
Q ss_pred ccccccccccccc-----ccchHHhhhcccchhcccCCCCccccchhhh--cCCCcccEEEccCCCCCcccCCCCccccc
Q 006902 312 SLELLDISHTYIQ-----ELPEELKLLVNLKCLNLRGTGQLNKIPRQLI--SKFSRLRVLRMLGTGPFSFDEAPEDSVLF 384 (626)
Q Consensus 312 ~Lr~L~L~~~~i~-----~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i--~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 384 (626)
.++.|.+.++.+. .++. .-.+.+|++|++++|.-...+|.. + .++++|++|++++|.+.+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~--------- 133 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNVSWATGR--------- 133 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESCCCSSTT---------
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecccccchh---------
Confidence 3455555555432 2222 223456888888888433355665 5 78888888888888765310
Q ss_pred CCccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCcc--ccccccccccccccceeecccCC
Q 006902 385 GGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATS--IVDATAFADLNHLNELWIYRGFE 462 (626)
Q Consensus 385 ~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~ 462 (626)
.......+..+++|+.|.+..+....+ .......+++|+.|+++++.-... +.....+..+++|++|.+++|.-
T Consensus 134 --~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 134 --SWLAELQQWLKPGLKVLSIAQAHSPAF--SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp --SSHHHHHTTBCSCCCEEEEECCSSCCC--CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred --hhhHHHHhhhccCCCEEEeeCCCcchh--hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 001113445788888888876654321 112223356777777777653211 11112335677888888877643
Q ss_pred cceEeeccccccccccCccccCccCEEEEeCCCCCcccc-ccccC---CCccEEEEeccCccccccccCccccccccCCC
Q 006902 463 LEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST-FLVFA---PNLKSLTLFDCGAMEEIISVGKIAETPEMMGH 538 (626)
Q Consensus 463 l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~L---~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 538 (626)
+.+ +.... .-...+++|++|+|++|......| .++.+ ++|+.|+|++| .++.++.
T Consensus 210 -~~l-~~~~~-----~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~------------- 268 (310)
T 4glp_A 210 -ETP-TGVCA-----ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPK------------- 268 (310)
T ss_dssp -CCH-HHHHH-----HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCS-------------
T ss_pred -Cch-HHHHH-----HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhh-------------
Confidence 211 11100 000256788888888764333323 24444 68888888776 4445543
Q ss_pred CCcCCccceeecCCccccccccCCCCCCCCccEEEecCC
Q 006902 539 ISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEVSGC 577 (626)
Q Consensus 539 ~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i~~C 577 (626)
..+++|++|+++++ .+..++. ...+|+|++|++.+.
T Consensus 269 -~~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 269 -GLPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp -CCCSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSST
T ss_pred -hhcCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCC
Confidence 22478888888774 5666543 566788888888775
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=1.9e-12 Score=128.46 Aligned_cols=190 Identities=17% Similarity=0.169 Sum_probs=134.4
Q ss_pred ccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHh
Q 006902 315 LLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQEL 394 (626)
Q Consensus 315 ~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 394 (626)
.+.+....+..++ ....+.+|++|++++| .+..+|. +..+++|++|++++|.+.+ .+. +
T Consensus 28 ~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n~l~~----------------~~~-l 86 (291)
T 1h6t_A 28 KDNLKKKSVTDAV-TQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTD----------------IKP-L 86 (291)
T ss_dssp HHHTTCSCTTSEE-CHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCC----------------CGG-G
T ss_pred HHHhcCCCccccc-chhhcCcccEEEccCC-CcccChh--HhcCCCCCEEEccCCccCC----------------Ccc-c
Confidence 3445555555543 3467888888888888 5777875 7888888888888887542 111 5
Q ss_pred hccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecccccc
Q 006902 395 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIV 474 (626)
Q Consensus 395 ~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 474 (626)
.++++|+.|. +.++.-. .+..+..+++|+.|+++++.... + ..+.
T Consensus 87 ~~l~~L~~L~--------------------------l~~n~l~----~~~~l~~l~~L~~L~L~~n~i~~-~--~~l~-- 131 (291)
T 1h6t_A 87 ANLKNLGWLF--------------------------LDENKVK----DLSSLKDLKKLKSLSLEHNGISD-I--NGLV-- 131 (291)
T ss_dssp TTCTTCCEEE--------------------------CCSSCCC----CGGGGTTCTTCCEEECTTSCCCC-C--GGGG--
T ss_pred ccCCCCCEEE--------------------------CCCCcCC----CChhhccCCCCCEEECCCCcCCC-C--hhhc--
Confidence 5555555554 4443322 12357788999999999875332 2 2333
Q ss_pred ccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcc
Q 006902 475 RKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLP 554 (626)
Q Consensus 475 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 554 (626)
.+++|+.|++++| .+..++.++.+++|+.|++++| .+..++. +..+++|++|+++++
T Consensus 132 -------~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~-------------l~~l~~L~~L~L~~N- 188 (291)
T 1h6t_A 132 -------HLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDN-QISDIVP-------------LAGLTKLQNLYLSKN- 188 (291)
T ss_dssp -------GCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS-CCCCCGG-------------GTTCTTCCEEECCSS-
T ss_pred -------CCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCC-ccccchh-------------hcCCCccCEEECCCC-
Confidence 7899999999997 6667788999999999999988 4554432 467899999999986
Q ss_pred ccccccCCCCCCCCccEEEecCCCCCCCCCC
Q 006902 555 ILKSIYWKPLPFTHLKEMEVSGCNQLEKHPL 585 (626)
Q Consensus 555 ~l~~i~~~~~~lp~L~~L~i~~C~~L~~lP~ 585 (626)
.+..++. ...+++|+.|++.+|+ +...|.
T Consensus 189 ~i~~l~~-l~~l~~L~~L~l~~n~-i~~~~~ 217 (291)
T 1h6t_A 189 HISDLRA-LAGLKNLDVLELFSQE-CLNKPI 217 (291)
T ss_dssp CCCBCGG-GTTCTTCSEEEEEEEE-EECCCE
T ss_pred cCCCChh-hccCCCCCEEECcCCc-ccCCcc
Confidence 6777753 6789999999999874 444444
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.34 E-value=2.3e-12 Score=126.63 Aligned_cols=197 Identities=16% Similarity=0.111 Sum_probs=131.9
Q ss_pred ccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHh
Q 006902 315 LLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQEL 394 (626)
Q Consensus 315 ~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 394 (626)
.+++.++.+..+ .....+.+|+.|+++++ .+..+|. +..+++|++|++.+|.+.+ +..+
T Consensus 23 ~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~-~i~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~l 81 (272)
T 3rfs_A 23 KANLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVRYLALGGNKLHD-----------------ISAL 81 (272)
T ss_dssp HHHHTCSCTTSE-ECHHHHTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECTTSCCCC-----------------CGGG
T ss_pred HHHhcCcccccc-cccccccceeeeeeCCC-Ccccccc--cccCCCCcEEECCCCCCCC-----------------chhh
Confidence 344555544444 23566777777777777 4666664 6777777777777776431 1124
Q ss_pred hccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecccccc
Q 006902 395 LGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIV 474 (626)
Q Consensus 395 ~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 474 (626)
..++ +|+.|++.++.-. .+ ....+..+++|++|+++++.. ..+.+..+.
T Consensus 82 ~~l~--------------------------~L~~L~L~~n~l~-~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~-- 130 (272)
T 3rfs_A 82 KELT--------------------------NLTYLILTGNQLQ-SL-PNGVFDKLTNLKELVLVENQL-QSLPDGVFD-- 130 (272)
T ss_dssp TTCT--------------------------TCCEEECTTSCCC-CC-CTTTTTTCTTCCEEECTTSCC-CCCCTTTTT--
T ss_pred cCCC--------------------------CCCEEECCCCccC-cc-ChhHhcCCcCCCEEECCCCcC-CccCHHHhc--
Confidence 4444 4555555554322 22 122467889999999998753 344444444
Q ss_pred ccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCC
Q 006902 475 RKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSY 552 (626)
Q Consensus 475 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~ 552 (626)
.+++|++|++++| .+..+++ ++.+++|+.|++++| .+..++.. .++.+++|++|++++
T Consensus 131 -------~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-----------~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 131 -------KLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEG-----------VFDKLTQLKDLRLYQ 190 (272)
T ss_dssp -------TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-----------TTTTCTTCCEEECCS
T ss_pred -------cCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHH-----------HhcCCccCCEEECCC
Confidence 7899999999997 5666664 789999999999998 45555442 357789999999998
Q ss_pred ccccccccCC-CCCCCCccEEEecCCCCCCCCC
Q 006902 553 LPILKSIYWK-PLPFTHLKEMEVSGCNQLEKHP 584 (626)
Q Consensus 553 ~~~l~~i~~~-~~~lp~L~~L~i~~C~~L~~lP 584 (626)
+ .+..++.. ...+++|++|++.+|+-....|
T Consensus 191 N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 191 N-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp S-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred C-cCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 6 46665544 5789999999999976443333
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.32 E-value=3.6e-12 Score=123.65 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=45.1
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCC
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 372 (626)
..++++++++.+..+|..+. .+|++|++++| .+..++...+.++++|++|++.+|.+.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCC
Confidence 45678888888888887765 57888888888 577777655888888888888888764
No 95
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=1.3e-13 Score=149.38 Aligned_cols=206 Identities=15% Similarity=0.044 Sum_probs=111.5
Q ss_pred CcccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 311 SSLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
++|+.|+|+++.++.||..|++|.+|+.|+++++..+..+|.. +. .++. ....
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-l~------~~~~--------------------~~~~ 401 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL-MR------ALDP--------------------LLYE 401 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH------HHCT--------------------GGGH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHH-HH------hccc--------------------ccCC
Confidence 5889999999999999999999999999999776322222221 10 0000 1123
Q ss_pred hHHhhccCCCceEE-EEEechhhHHHHhhccc-----cccceeEEEEeccCCCccccccccccccccccceeecccCCcc
Q 006902 391 IQELLGLKYLEVLE-LTLGSYHALQILLSSNK-----LKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELE 464 (626)
Q Consensus 391 ~~~l~~L~~L~~L~-i~~~~~~~~~~l~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 464 (626)
+..++.|++|+.|. +..+....+..+.-..+ ....|+.|++.++.-. .+ +.+..+++|+.|+++++.-.
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~l---p~~~~l~~L~~L~Ls~N~l~- 476 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VL---CHLEQLLLVTHLDLSHNRLR- 476 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SC---CCGGGGTTCCEEECCSSCCC-
T ss_pred HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCC-CC---cCccccccCcEeecCccccc-
Confidence 33444444444433 11111111111100000 0124667777766433 22 23666667777777765433
Q ss_pred eEeeccccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccc--cccCccccccccCCCCCcC
Q 006902 465 ELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEI--ISVGKIAETPEMMGHISPF 542 (626)
Q Consensus 465 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i--~~~~~~~~~~~~~~~~~~f 542 (626)
.+ |..+. .+++|+.|+|++| .++.+|.++.+++|+.|+|++| .+..+ +. .++.+
T Consensus 477 ~l-p~~~~---------~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N-~l~~~~~p~------------~l~~l 532 (567)
T 1dce_A 477 AL-PPALA---------ALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNN-RLQQSAAIQ------------PLVSC 532 (567)
T ss_dssp CC-CGGGG---------GCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSS-CCCSSSTTG------------GGGGC
T ss_pred cc-chhhh---------cCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCCC-CCCCCCCcH------------HHhcC
Confidence 32 33333 5677777777764 4555666677777777777766 34444 22 34566
Q ss_pred CccceeecCCccccccccCCCC----CCCCccEEE
Q 006902 543 ENLQMLHLSYLPILKSIYWKPL----PFTHLKEME 573 (626)
Q Consensus 543 p~L~~L~l~~~~~l~~i~~~~~----~lp~L~~L~ 573 (626)
++|++|+++++ .+..++.... .+|+|+.|+
T Consensus 533 ~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 533 PRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 77777777664 3444433221 256666654
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=2.2e-12 Score=141.74 Aligned_cols=256 Identities=17% Similarity=0.096 Sum_probs=131.5
Q ss_pred CcccccccccccccccchHHhhhcccchhcccCCCC--------------------------ccccchhhhcCCCcccEE
Q 006902 311 SSLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQ--------------------------LNKIPRQLISKFSRLRVL 364 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~--------------------------l~~lP~~~i~~L~~L~~L 364 (626)
.+|++|++++|.+..+|..++.+.+|++|+++.+.. ...+|.. +..+++|++|
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-GGGGGGCCEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-HhhcCCCcEE
Confidence 467888888887777777777777777777763211 1234443 5566677777
Q ss_pred EccCCCCCcccCCCCcccccCCccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEec----------c
Q 006902 365 RMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWL----------A 434 (626)
Q Consensus 365 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~----------~ 434 (626)
++.+|.+. ......-+..+++|+.|.+. ... .-..+......+++|+.|++.+ +
T Consensus 299 ~Ls~~~l~--------------~~~~~~~~~~~~~L~~L~L~-~~~-~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 299 DLLYALLE--------------TEDHCTLIQKCPNLEVLETR-NVI-GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp EETTCCCC--------------HHHHHHHHTTCTTCCEEEEE-GGG-HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred ecCCCcCC--------------HHHHHHHHHhCcCCCEEecc-Ccc-CHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 77766532 12223446778888888877 221 1122333333456788888884 4
Q ss_pred CCCcccccccc-ccccccccceeecccCCcceEeeccccc---------------cccc----------cCccccCccCE
Q 006902 435 GDATSIVDATA-FADLNHLNELWIYRGFELEELKIDYTEI---------------VRKR----------REPFVFRSLHH 488 (626)
Q Consensus 435 ~~~~~~~~~~~-l~~~~~L~~L~l~~~~~l~~l~~~~~~~---------------~~~~----------~~~~~l~~L~~ 488 (626)
...... .+.. ...+++|++|.+. |..+..-.+..+.. .... .....+++|++
T Consensus 363 ~~~~~~-~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 363 GLVSQR-GLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp CCCCHH-HHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred CccCHH-HHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 333221 1111 2345677777763 22222111111110 0000 00123455555
Q ss_pred EEEeCCCC-Ccc--ccccc-cCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcccccc--ccCC
Q 006902 489 VTIYSCTK-LKD--STFLV-FAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKS--IYWK 562 (626)
Q Consensus 489 L~L~~c~~-l~~--l~~l~-~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~--i~~~ 562 (626)
|++++|.. +.+ +..++ .+++|+.|+|++|. +.+.. +...+..+++|++|++++|+ +.. ++..
T Consensus 441 L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~----------~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~ 508 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEG----------LMEFSRGCPNLQKLEMRGCC-FSERAIAAA 508 (592)
T ss_dssp EEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHH----------HHHHHTCCTTCCEEEEESCC-CBHHHHHHH
T ss_pred EEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHH----------HHHHHhcCcccCeeeccCCC-CcHHHHHHH
Confidence 55555432 121 11222 35666666666553 22110 00123567889999998887 432 2222
Q ss_pred CCCCCCccEEEecCCCCCCCCCCC-CCcCcCcceEEe
Q 006902 563 PLPFTHLKEMEVSGCNQLEKHPLD-SNSAKERKVVIR 598 (626)
Q Consensus 563 ~~~lp~L~~L~i~~C~~L~~lP~~-~~~~l~~l~~~~ 598 (626)
...+|+|++|++++|+ +..-... ....++.+.+..
T Consensus 509 ~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~ 544 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIEL 544 (592)
T ss_dssp HHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEE
T ss_pred HHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEE
Confidence 3468899999999987 5532211 112345555543
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=2.7e-12 Score=119.55 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=23.8
Q ss_pred hhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCC
Q 006902 331 KLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTG 370 (626)
Q Consensus 331 ~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 370 (626)
+.+.+|++|++++| .+..+| + +..+++|++|++.+|.
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~l~~n~ 77 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-G-IEYAHNIKDLTINNIH 77 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-T-GGGCTTCSEEEEESCC
T ss_pred hhcCCccEEeccCC-CccChH-H-HhcCCCCCEEEccCCC
Confidence 56666666666666 466666 3 6666666666666664
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=1.1e-11 Score=115.38 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=10.2
Q ss_pred cCCCcccEEEccCCCCC
Q 006902 356 SKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 356 ~~L~~L~~L~l~~~~~~ 372 (626)
..+++|++|++.++.+.
T Consensus 41 ~~l~~L~~L~l~~n~i~ 57 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT 57 (197)
T ss_dssp HHHHTCCEEEEESSCCS
T ss_pred hhcCCccEEeccCCCcc
Confidence 45566666666666543
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=7.3e-12 Score=122.24 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=96.4
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
.+..++++++.+.++| .+..+.+|++|++++| .+..+| + +..+++|++|++.+|.+.+ .+
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~L~~N~i~~----------------~~ 79 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-G-MQFFTNLKELHLSHNQISD----------------LS 79 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-T-GGGCTTCCEEECCSSCCCC----------------CG
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-H-HhhCCCCCEEECCCCccCC----------------Ch
Confidence 4567788888888888 6889999999999999 688888 4 8899999999999987652 11
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
. +..+++|+.|+++.+....+..+ .. .+|+.|++.++.-. .+..+..+++|+.|+++++. ++.+ ..+
T Consensus 80 ~-l~~l~~L~~L~L~~N~l~~l~~~---~~--~~L~~L~L~~N~l~----~~~~l~~l~~L~~L~Ls~N~-i~~~--~~l 146 (263)
T 1xeu_A 80 P-LKDLTKLEELSVNRNRLKNLNGI---PS--ACLSRLFLDNNELR----DTDSLIHLKNLEILSIRNNK-LKSI--VML 146 (263)
T ss_dssp G-GTTCSSCCEEECCSSCCSCCTTC---CC--SSCCEEECCSSCCS----BSGGGTTCTTCCEEECTTSC-CCBC--GGG
T ss_pred h-hccCCCCCEEECCCCccCCcCcc---cc--CcccEEEccCCccC----CChhhcCcccccEEECCCCc-CCCC--hHH
Confidence 1 77778888877765544332111 11 45555555554322 11234444555555555432 2211 112
Q ss_pred cccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEecc
Q 006902 472 EIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDC 517 (626)
Q Consensus 472 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~ 517 (626)
. .+++|+.|++++| .+..++.+..+++|+.|+++++
T Consensus 147 ~---------~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 147 G---------FLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp G---------GCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEE
T ss_pred c---------cCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCC
Confidence 1 3455555555553 3333344445555555555544
No 100
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.24 E-value=2.7e-12 Score=141.04 Aligned_cols=111 Identities=13% Similarity=0.088 Sum_probs=69.6
Q ss_pred ccccccccceeecccCC-cceEeeccccccccccCccccCccCEEEEeCCCCCcc--ccc-cccCCCccEEEEeccCccc
Q 006902 446 FADLNHLNELWIYRGFE-LEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKD--STF-LVFAPNLKSLTLFDCGAME 521 (626)
Q Consensus 446 l~~~~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~-l~~L~~L~~L~L~~~~~l~ 521 (626)
+..+++|+.|.++.|.+ +....+..+. ..+++|++|+|++|. +++ ++. +..+++|+.|+|++|. +.
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~--------~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~ 501 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIG--------QYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FS 501 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHH--------HSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CB
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHH--------HhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-Cc
Confidence 34566777777765443 1111122221 247899999999885 443 333 5789999999999997 43
Q ss_pred cccccCccccccccCCCCCcCCccceeecCCccccccccCC--CCCCCCccEEEecCC
Q 006902 522 EIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYWK--PLPFTHLKEMEVSGC 577 (626)
Q Consensus 522 ~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~--~~~lp~L~~L~i~~C 577 (626)
+..... ....+|+|++|++++|. ++..... ...+|.|....+...
T Consensus 502 ~~~~~~----------~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 502 ERAIAA----------AVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHH----------HHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHH----------HHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 321100 23468999999999987 5443221 346788877766553
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=1.9e-12 Score=132.86 Aligned_cols=240 Identities=14% Similarity=0.079 Sum_probs=142.0
Q ss_pred cccccccccccccccc-----hHHhhhc-ccchhcccCCCCccccchhhhcCC-----CcccEEEccCCCCCcccCCCCc
Q 006902 312 SLELLDISHTYIQELP-----EELKLLV-NLKCLNLRGTGQLNKIPRQLISKF-----SRLRVLRMLGTGPFSFDEAPED 380 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP-----~~i~~L~-~L~~L~l~~~~~l~~lP~~~i~~L-----~~L~~L~l~~~~~~~~~~~~~~ 380 (626)
+|++|+|++|.+...+ ..+..+. +|++|++++| .+...+...+..+ ++|++|++++|.+....
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~----- 96 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS----- 96 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-----
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH-----
Confidence 5888999988888776 5667777 8899999888 5666543335554 88999999888764210
Q ss_pred ccccCCccchhHHhhcc-CCCceEEEEEechhh--HHHHhhcccc-ccceeEEEEeccCCCcc-ccc-cccccccc-ccc
Q 006902 381 SVLFGGGEVLIQELLGL-KYLEVLELTLGSYHA--LQILLSSNKL-KSCIRSLFLWLAGDATS-IVD-ATAFADLN-HLN 453 (626)
Q Consensus 381 ~~~~~~~~~~~~~l~~L-~~L~~L~i~~~~~~~--~~~l~~~~~~-~~~L~~L~l~~~~~~~~-~~~-~~~l~~~~-~L~ 453 (626)
.......+..+ ++|+.|+++.+.... ...+...... .++|+.|++.++.-... ... ...+...+ +|+
T Consensus 97 ------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 97 ------SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp ------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ------HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 11222235555 788888887665432 2223222222 35788888887753211 101 11334444 888
Q ss_pred ceeecccCCcceEeeccccccccccCcccc-CccCEEEEeCCCCCcc-----cc-cccc-CCCccEEEEeccCccccccc
Q 006902 454 ELWIYRGFELEELKIDYTEIVRKRREPFVF-RSLHHVTIYSCTKLKD-----ST-FLVF-APNLKSLTLFDCGAMEEIIS 525 (626)
Q Consensus 454 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l-~~L~~L~L~~c~~l~~-----l~-~l~~-L~~L~~L~L~~~~~l~~i~~ 525 (626)
+|++++|.-.. ..+..+. .....+ ++|++|+|++|. +.+ ++ .+.. .++|+.|+|++| .+...+.
T Consensus 171 ~L~Ls~n~l~~-~~~~~l~-----~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~ 242 (362)
T 3goz_A 171 SLNLRGNNLAS-KNCAELA-----KFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSL 242 (362)
T ss_dssp EEECTTSCGGG-SCHHHHH-----HHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCH
T ss_pred EeeecCCCCch-hhHHHHH-----HHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHH
Confidence 88888774332 2222211 001133 488888888864 444 33 2444 358888888887 3443322
Q ss_pred cCccccccccCCCCCcCCccceeecCCcc-------ccccccCCCCCCCCccEEEecCCC
Q 006902 526 VGKIAETPEMMGHISPFENLQMLHLSYLP-------ILKSIYWKPLPFTHLKEMEVSGCN 578 (626)
Q Consensus 526 ~~~~~~~~~~~~~~~~fp~L~~L~l~~~~-------~l~~i~~~~~~lp~L~~L~i~~C~ 578 (626)
.. +......+++|++|++++|. .+..+......+++|+.|++++++
T Consensus 243 ~~-------l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 243 EN-------LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HH-------HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HH-------HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 11 11134667888888888764 133344445577788888887764
No 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.21 E-value=4.6e-12 Score=134.65 Aligned_cols=188 Identities=16% Similarity=0.147 Sum_probs=101.2
Q ss_pred ccccccccccccc-----ccchHHhhhcccchhcccCCCCcccc-chhhhcCCC----cccEEEccCCCCCcccCCCCcc
Q 006902 312 SLELLDISHTYIQ-----ELPEELKLLVNLKCLNLRGTGQLNKI-PRQLISKFS----RLRVLRMLGTGPFSFDEAPEDS 381 (626)
Q Consensus 312 ~Lr~L~L~~~~i~-----~LP~~i~~L~~L~~L~l~~~~~l~~l-P~~~i~~L~----~L~~L~l~~~~~~~~~~~~~~~ 381 (626)
+|++|+|++|.+. .+|..+..+++|++|++++| .+... +..+...+. +|++|++.+|.+....
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~------ 101 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG------ 101 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG------
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH------
Confidence 6777888877765 55777777788888888877 35432 223223455 5888888877653200
Q ss_pred cccCCccchhHHhhccCCCceEEEEEechhh--HHHHhhc-cccccceeEEEEeccCCCcccc-c-ccccccccccccee
Q 006902 382 VLFGGGEVLIQELLGLKYLEVLELTLGSYHA--LQILLSS-NKLKSCIRSLFLWLAGDATSIV-D-ATAFADLNHLNELW 456 (626)
Q Consensus 382 ~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~--~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~-~-~~~l~~~~~L~~L~ 456 (626)
-...+..+..+++|+.|+++.+.... ...+... ....++|+.|++.++.-..... . ...+..+++|++|+
T Consensus 102 -----~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 102 -----CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp -----HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred -----HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 02346677788888888877655322 2223222 1123468888887775332110 0 12345567788888
Q ss_pred ecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCcc-----cc-ccccCCCccEEEEecc
Q 006902 457 IYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKD-----ST-FLVFAPNLKSLTLFDC 517 (626)
Q Consensus 457 l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~-~l~~L~~L~~L~L~~~ 517 (626)
++++.. ....+..+.. .+ ....++|++|++++|. +.. ++ .+..+++|+.|++++|
T Consensus 177 L~~n~i-~~~~~~~l~~--~l--~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 177 VSNNDI-NEAGVRVLCQ--GL--KDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp CCSSBC-HHHHHHHHHH--HH--HHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred CcCCCc-chHHHHHHHH--HH--hcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 876542 2111111110 00 0013466666666653 222 22 2445566666666655
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=123.41 Aligned_cols=203 Identities=16% Similarity=0.077 Sum_probs=143.2
Q ss_pred Cccccccccccccc-ccchHH--hhhcccchhcccCCCCccc-cc---hhhhcCCCcccEEEccCCCCCcccCCCCcccc
Q 006902 311 SSLELLDISHTYIQ-ELPEEL--KLLVNLKCLNLRGTGQLNK-IP---RQLISKFSRLRVLRMLGTGPFSFDEAPEDSVL 383 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~-~LP~~i--~~L~~L~~L~l~~~~~l~~-lP---~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 383 (626)
.+|++|++++|.+. ..|..+ +.+.+|++|++++|. +.. .| ...+..+++|++|++.+|.+..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---------- 159 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPA---------- 159 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCC----------
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcch----------
Confidence 46999999999887 566776 899999999999994 554 22 2225789999999999998753
Q ss_pred cCCccchhHHhhccCCCceEEEEEechhhHHHHhhcc--ccccceeEEEEeccCCCcccccc-cc-ccccccccceeecc
Q 006902 384 FGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSN--KLKSCIRSLFLWLAGDATSIVDA-TA-FADLNHLNELWIYR 459 (626)
Q Consensus 384 ~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~-~~-l~~~~~L~~L~l~~ 459 (626)
..+..++.+++|+.|+++.+.......+.... ..+++|+.|++.++.-. .++.. .. +..+++|++|++++
T Consensus 160 -----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 160 -----FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp -----CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTT
T ss_pred -----hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCC
Confidence 22345788999999999877654433333222 34678999999988653 22111 12 46779999999998
Q ss_pred cCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccc-cccCCCccEEEEeccCccccccccCccccccccCCC
Q 006902 460 GFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF-LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGH 538 (626)
Q Consensus 460 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 538 (626)
+.-.. +.|..+. ....+++|++|+|++| .++.+|. + .++|+.|+|++| .+..++ .
T Consensus 234 N~l~~-~~p~~~~------~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~-------------~ 289 (310)
T 4glp_A 234 NSLRA-TVNPSAP------RCMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSN-RLNRAP-------------Q 289 (310)
T ss_dssp SCCCC-CCCSCCS------SCCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSC-CCCSCC-------------C
T ss_pred CCCCc-cchhhHH------hccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCC-cCCCCc-------------h
Confidence 75443 2233332 0112479999999997 5557774 4 389999999988 455443 2
Q ss_pred CCcCCccceeecCCcc
Q 006902 539 ISPFENLQMLHLSYLP 554 (626)
Q Consensus 539 ~~~fp~L~~L~l~~~~ 554 (626)
...+|+|++|++++++
T Consensus 290 ~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 PDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTSCCCCSCEECSSTT
T ss_pred hhhCCCccEEECcCCC
Confidence 3678999999999854
No 104
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.18 E-value=7.6e-12 Score=137.51 Aligned_cols=236 Identities=15% Similarity=0.104 Sum_probs=118.5
Q ss_pred Ccccccccccc-cccccchHHhhhcccchhcccCCC-------------------Cc-----------cccchhhhcCCC
Q 006902 311 SSLELLDISHT-YIQELPEELKLLVNLKCLNLRGTG-------------------QL-----------NKIPRQLISKFS 359 (626)
Q Consensus 311 ~~Lr~L~L~~~-~i~~LP~~i~~L~~L~~L~l~~~~-------------------~l-----------~~lP~~~i~~L~ 359 (626)
.+|++|++++| .+..+|..+..+.+|++|++..+. .+ ..+|.- +..++
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~-~~~~~ 289 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV-YSVCS 289 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG-HHHHT
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH-HHhhC
Confidence 46788888777 555677777777777777654431 11 123332 34567
Q ss_pred cccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEecc-----
Q 006902 360 RLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLA----- 434 (626)
Q Consensus 360 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~----- 434 (626)
+|++|++.+|.+. +.....-+.++++|+.|.+..+ . ....+......+++|+.|++.++
T Consensus 290 ~L~~L~L~~~~l~--------------~~~l~~~~~~~~~L~~L~l~~~-~-~~~~l~~l~~~~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 290 RLTTLNLSYATVQ--------------SYDLVKLLCQCPKLQRLWVLDY-I-EDAGLEVLASTCKDLRELRVFPSEPFVM 353 (594)
T ss_dssp TCCEEECTTCCCC--------------HHHHHHHHTTCTTCCEEEEEGG-G-HHHHHHHHHHHCTTCCEEEEECSCTTCS
T ss_pred CCCEEEccCCCCC--------------HHHHHHHHhcCCCcCEEeCcCc-c-CHHHHHHHHHhCCCCCEEEEecCccccc
Confidence 7777777777632 1223333567788888887754 1 11222222233567888888542
Q ss_pred ---CCCcccccccccc-ccccccceeecccCCcceEeeccccc--------------------cc-------cccCcccc
Q 006902 435 ---GDATSIVDATAFA-DLNHLNELWIYRGFELEELKIDYTEI--------------------VR-------KRREPFVF 483 (626)
Q Consensus 435 ---~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~l~~~~~~~--------------------~~-------~~~~~~~l 483 (626)
...... .+..+. .+++|+.|.+. |..+....+..+.. .. ...-...+
T Consensus 354 ~~~~~l~~~-~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~ 431 (594)
T 2p1m_B 354 EPNVALTEQ-GLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431 (594)
T ss_dssp SCSSCCCHH-HHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC
T ss_pred ccCCCCCHH-HHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC
Confidence 111111 111222 24566666433 22222111111100 00 00001134
Q ss_pred CccCEEEEeCCCCCcc--cccccc-CCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcccccccc
Q 006902 484 RSLHHVTIYSCTKLKD--STFLVF-APNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIY 560 (626)
Q Consensus 484 ~~L~~L~L~~c~~l~~--l~~l~~-L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~ 560 (626)
++|+.|+|++ .+.+ ++.++. +++|+.|+|++|. +.+.... .....+|+|++|++++|+. ....
T Consensus 432 ~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~----------~l~~~~~~L~~L~L~~n~~-~~~~ 497 (594)
T 2p1m_B 432 KDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMH----------HVLSGCDSLRKLEIRDCPF-GDKA 497 (594)
T ss_dssp TTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHH----------HHHHHCTTCCEEEEESCSC-CHHH
T ss_pred CCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHH----------HHHhcCCCcCEEECcCCCC-cHHH
Confidence 4555555543 2221 112333 6666666666654 2211110 0114589999999999876 3221
Q ss_pred --CCCCCCCCccEEEecCCCC
Q 006902 561 --WKPLPFTHLKEMEVSGCNQ 579 (626)
Q Consensus 561 --~~~~~lp~L~~L~i~~C~~ 579 (626)
.....+++|++|++++|+.
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhCCCCCEEeeeCCCC
Confidence 1234689999999999976
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.16 E-value=1.2e-11 Score=126.82 Aligned_cols=253 Identities=13% Similarity=0.016 Sum_probs=158.2
Q ss_pred cccccccccccc-chHHhhhcccchhcccCCCCccccch----hhhcCCC-cccEEEccCCCCCcccCCCCcccccCCcc
Q 006902 315 LLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNKIPR----QLISKFS-RLRVLRMLGTGPFSFDEAPEDSVLFGGGE 388 (626)
Q Consensus 315 ~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~----~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 388 (626)
+++++.+++.+. |..+....+|++|++++| .+..++. ..+.+++ +|++|++++|.+..
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--------------- 65 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGF--------------- 65 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG---------------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCH---------------
Confidence 467888888865 555555666999999999 5888875 4478898 99999999998643
Q ss_pred chhHHhhcc-----CCCceEEEEEechhh--HHHHhhccccc-cceeEEEEeccCCCcccc-cc-ccccc-cccccceee
Q 006902 389 VLIQELLGL-----KYLEVLELTLGSYHA--LQILLSSNKLK-SCIRSLFLWLAGDATSIV-DA-TAFAD-LNHLNELWI 457 (626)
Q Consensus 389 ~~~~~l~~L-----~~L~~L~i~~~~~~~--~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~-~~-~~l~~-~~~L~~L~l 457 (626)
..+..+..+ ++|+.|+++.+.... ...+....... ++|+.|++.++.-..... .+ ..+.. +++|++|++
T Consensus 66 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 66 KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNL 145 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEEC
T ss_pred HHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEc
Confidence 223344443 899999998775432 23333332223 789999999886432110 01 12444 369999999
Q ss_pred cccCCcceEeeccccccccccCccccC-ccCEEEEeCCCCCcccc------ccccC-CCccEEEEeccCccccccccCcc
Q 006902 458 YRGFELEELKIDYTEIVRKRREPFVFR-SLHHVTIYSCTKLKDST------FLVFA-PNLKSLTLFDCGAMEEIISVGKI 529 (626)
Q Consensus 458 ~~~~~l~~l~~~~~~~~~~~~~~~~l~-~L~~L~L~~c~~l~~l~------~l~~L-~~L~~L~L~~~~~l~~i~~~~~~ 529 (626)
++|.-.. .....+. .....++ +|++|+|++|. ++... .+..+ ++|+.|+|++|. +.......
T Consensus 146 s~N~l~~-~~~~~l~-----~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~-- 215 (362)
T 3goz_A 146 RGNDLGI-KSSDELI-----QILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAE-- 215 (362)
T ss_dssp TTSCGGG-SCHHHHH-----HHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH--
T ss_pred cCCcCCH-HHHHHHH-----HHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHH--
Confidence 9875332 1111111 0001344 99999999984 44333 24456 599999999984 44421100
Q ss_pred ccccccCCCCCc-CCccceeecCCcccccccc-----CCCCCCCCccEEEecCCC-------CCCCCCCCCCcCcCcceE
Q 006902 530 AETPEMMGHISP-FENLQMLHLSYLPILKSIY-----WKPLPFTHLKEMEVSGCN-------QLEKHPLDSNSAKERKVV 596 (626)
Q Consensus 530 ~~~~~~~~~~~~-fp~L~~L~l~~~~~l~~i~-----~~~~~lp~L~~L~i~~C~-------~L~~lP~~~~~~l~~l~~ 596 (626)
+...+.. .++|++|+++++ .+.... .....+++|++|++++|. .++.++.... .+++|+.
T Consensus 216 -----l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~-~l~~L~~ 288 (362)
T 3goz_A 216 -----LAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP-NIQKIIL 288 (362)
T ss_dssp -----HHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST-TCCEEEE
T ss_pred -----HHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc-cCCceEE
Confidence 0002223 359999999986 454432 234678999999999985 1233333332 3566666
Q ss_pred Eecc
Q 006902 597 IRGD 600 (626)
Q Consensus 597 ~~~~ 600 (626)
.+..
T Consensus 289 LdL~ 292 (362)
T 3goz_A 289 VDKN 292 (362)
T ss_dssp ECTT
T ss_pred EecC
Confidence 6644
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.15 E-value=1.7e-10 Score=111.67 Aligned_cols=174 Identities=22% Similarity=0.240 Sum_probs=114.8
Q ss_pred cccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCceEEEEEechhhH
Q 006902 334 VNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHAL 413 (626)
Q Consensus 334 ~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~ 413 (626)
...++++++++ .+..+|.+ +. ++|++|++.++.+.++ .+..+.++++|+.|++.
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~-~~--~~l~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~L~------- 67 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSG-IP--ADTEKLDLQSTGLATL---------------SDATFRGLTKLTWLNLD------- 67 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSC-CC--TTCCEEECTTSCCCCC---------------CTTTTTTCTTCCEEECT-------
T ss_pred CCCeEEecCCC-CccccCCC-CC--CCCCEEEccCCCcCcc---------------CHhHhcCcccCCEEECC-------
Confidence 35778999998 68999987 55 6899999999987542 12235566666666554
Q ss_pred HHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeC
Q 006902 414 QILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYS 493 (626)
Q Consensus 414 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~ 493 (626)
++.-. .. ....+..+++|+.|+++++. +..+.+..+. .+++|++|+|++
T Consensus 68 -------------------~n~l~-~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~---------~l~~L~~L~L~~ 116 (251)
T 3m19_A 68 -------------------YNQLQ-TL-SAGVFDDLTELGTLGLANNQ-LASLPLGVFD---------HLTQLDKLYLGG 116 (251)
T ss_dssp -------------------TSCCC-CC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTTT---------TCTTCCEEECCS
T ss_pred -------------------CCcCC-cc-CHhHhccCCcCCEEECCCCc-ccccChhHhc---------ccCCCCEEEcCC
Confidence 32211 11 11245667778888887654 3333344444 678888888888
Q ss_pred CCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccC-CCCCCCCcc
Q 006902 494 CTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYW-KPLPFTHLK 570 (626)
Q Consensus 494 c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~-~~~~lp~L~ 570 (626)
| .+..+++ +..+++|+.|+|+++ .+..++.. .++.+++|++|+++++ .+..++. ....+++|+
T Consensus 117 N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-----------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 117 N-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAG-----------AFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-----------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred C-cCCCcChhHhccCCcccEEECcCC-cCCccCHH-----------HcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCC
Confidence 6 5556654 677888888888877 45555442 3566788888888874 5555554 356678888
Q ss_pred EEEecCCC
Q 006902 571 EMEVSGCN 578 (626)
Q Consensus 571 ~L~i~~C~ 578 (626)
+|++.+++
T Consensus 183 ~L~l~~N~ 190 (251)
T 3m19_A 183 TITLFGNQ 190 (251)
T ss_dssp EEECCSCC
T ss_pred EEEeeCCc
Confidence 88888764
No 107
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.15 E-value=6.7e-12 Score=133.41 Aligned_cols=242 Identities=17% Similarity=0.112 Sum_probs=156.4
Q ss_pred Ccccccccccccccc-----cchHHhhhcccchhcccCCCCccccchhhhc-----CCCcccEEEccCCCCCcccCCCCc
Q 006902 311 SSLELLDISHTYIQE-----LPEELKLLVNLKCLNLRGTGQLNKIPRQLIS-----KFSRLRVLRMLGTGPFSFDEAPED 380 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~-----LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~-----~L~~L~~L~l~~~~~~~~~~~~~~ 380 (626)
.+|++|+|++|.+.. +|..++.+++|++|++++|. +...+...+. .+++|++|++.+|.+....
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~----- 215 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN----- 215 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH-----
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH-----
Confidence 369999999998764 57778888999999999994 5543221132 4679999999999764210
Q ss_pred ccccCCccchhHHhhccCCCceEEEEEechhh--HHHHhhc-cccccceeEEEEeccCCCccc-c-ccccccccccccce
Q 006902 381 SVLFGGGEVLIQELLGLKYLEVLELTLGSYHA--LQILLSS-NKLKSCIRSLFLWLAGDATSI-V-DATAFADLNHLNEL 455 (626)
Q Consensus 381 ~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~--~~~l~~~-~~~~~~L~~L~l~~~~~~~~~-~-~~~~l~~~~~L~~L 455 (626)
....+..+..+++|+.|+++.+.... ...+... ...+++|+.|++.++.-.... . -...+..+++|++|
T Consensus 216 ------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 216 ------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp ------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred ------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceE
Confidence 11246678889999999988765433 2233322 123678999999988543210 0 01245668899999
Q ss_pred eecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCcc----cc-ccccCCCccEEEEeccCccccccccCccc
Q 006902 456 WIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKD----ST-FLVFAPNLKSLTLFDCGAMEEIISVGKIA 530 (626)
Q Consensus 456 ~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~----l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~ 530 (626)
+++++.... ..+..+.. .. ....++|++|++++|..... ++ .+..+++|+.|+|++| .+.+........
T Consensus 290 ~Ls~n~i~~-~~~~~l~~--~l--~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 363 (461)
T 1z7x_W 290 SLAGNELGD-EGARLLCE--TL--LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQ 363 (461)
T ss_dssp ECTTCCCHH-HHHHHHHH--HH--TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHH
T ss_pred ECCCCCCch-HHHHHHHH--Hh--ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHH
Confidence 999875322 11111110 00 01236999999999853332 23 3678899999999998 454432211000
Q ss_pred cccccCCCC-CcCCccceeecCCccccc-----cccCCCCCCCCccEEEecCCC
Q 006902 531 ETPEMMGHI-SPFENLQMLHLSYLPILK-----SIYWKPLPFTHLKEMEVSGCN 578 (626)
Q Consensus 531 ~~~~~~~~~-~~fp~L~~L~l~~~~~l~-----~i~~~~~~lp~L~~L~i~~C~ 578 (626)
.+ ...++|++|++++|. +. .++.....+++|++|++++|+
T Consensus 364 -------~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 364 -------GLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp -------HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred -------HHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 11 126799999999974 44 455455678999999999984
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.12 E-value=6.5e-11 Score=111.13 Aligned_cols=179 Identities=16% Similarity=0.135 Sum_probs=107.1
Q ss_pred cccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHH
Q 006902 314 ELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQE 393 (626)
Q Consensus 314 r~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (626)
+.++.+++.+..+|..+ ..+|++|++++| .+..+|...+.++++|++|++.+|.+..++ ...
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~ 71 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLP---------------NGV 71 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCC---------------TTT
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccC---------------hhh
Confidence 34566777777777655 347888888888 577887765678888888888887754311 111
Q ss_pred hhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccc
Q 006902 394 LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEI 473 (626)
Q Consensus 394 l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~ 473 (626)
+..+++|+.|++. ++.-. .+ ....+..+++|+.|+++++. +..+.+..+.
T Consensus 72 ~~~l~~L~~L~Ls--------------------------~n~l~-~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~- 121 (208)
T 2o6s_A 72 FNKLTSLTYLNLS--------------------------TNQLQ-SL-PNGVFDKLTQLKELALNTNQ-LQSLPDGVFD- 121 (208)
T ss_dssp TTTCTTCCEEECC--------------------------SSCCC-CC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-
T ss_pred cCCCCCcCEEECC--------------------------CCcCC-cc-CHhHhcCccCCCEEEcCCCc-CcccCHhHhc-
Confidence 3444555544443 32211 11 11234566777777777653 3333333333
Q ss_pred cccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecC
Q 006902 474 VRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLS 551 (626)
Q Consensus 474 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~ 551 (626)
.+++|++|++++| .+..++. +..+++|+.|+|+++.. .+.+|+|++|.++
T Consensus 122 --------~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~-------------------~~~~~~l~~L~~~ 173 (208)
T 2o6s_A 122 --------KLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW-------------------DCTCPGIRYLSEW 173 (208)
T ss_dssp --------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB-------------------CCCTTTTHHHHHH
T ss_pred --------cCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe-------------------ecCCCCHHHHHHH
Confidence 5677888888775 4445553 66778888888877621 1346677777776
Q ss_pred CccccccccCCCCCCCC
Q 006902 552 YLPILKSIYWKPLPFTH 568 (626)
Q Consensus 552 ~~~~l~~i~~~~~~lp~ 568 (626)
.+..-..+|...+.++.
T Consensus 174 ~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 174 INKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHCTTTBBCTTSSBCT
T ss_pred HHhCCceeeccCccccC
Confidence 65555566655555444
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.10 E-value=6.1e-11 Score=127.82 Aligned_cols=180 Identities=14% Similarity=0.125 Sum_probs=110.7
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
++++|+|+++++.++|..+. .+|++|++++| .+..+| + .+++|++|++++|.+.+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N-~l~~ip-~---~l~~L~~L~Ls~N~l~~ip---------------- 116 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQN-ALISLP-E---LPASLEYLDACDNRLSTLP---------------- 116 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSS-CCSCCC-C---CCTTCCEEECCSSCCSCCC----------------
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCC-CCcccc-c---ccCCCCEEEccCCCCCCcc----------------
Confidence 68899999999999998764 78999999999 688888 3 4688999999998865421
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
. +.+ +|+.|.++.+....+ +. .+++|+.|++.++.-.. + .. .+++|+.|+++++. +..+ +. +
T Consensus 117 ~-l~~--~L~~L~Ls~N~l~~l---p~---~l~~L~~L~Ls~N~l~~-l---p~--~l~~L~~L~Ls~N~-L~~l-p~-l 178 (571)
T 3cvr_A 117 E-LPA--SLKHLDVDNNQLTML---PE---LPALLEYINADNNQLTM-L---PE--LPTSLEVLSVRNNQ-LTFL-PE-L 178 (571)
T ss_dssp C-CCT--TCCEEECCSSCCSCC---CC---CCTTCCEEECCSSCCSC-C---CC--CCTTCCEEECCSSC-CSCC-CC-C
T ss_pred h-hhc--CCCEEECCCCcCCCC---CC---cCccccEEeCCCCccCc-C---CC--cCCCcCEEECCCCC-CCCc-ch-h
Confidence 1 222 677777765554432 21 35667777777664331 2 11 35667777776654 2222 11 1
Q ss_pred cccccccCccccCccCEEEEeCCCCCccccccccCCCc-------cEEEEeccCccccccccCccccccccCCCCCcCCc
Q 006902 472 EIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNL-------KSLTLFDCGAMEEIISVGKIAETPEMMGHISPFEN 544 (626)
Q Consensus 472 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L-------~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~ 544 (626)
. ++|+.|+|++| .++.+|.+.. +| +.|+|++| .+..++. .+..+++
T Consensus 179 ----------~-~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~------------~l~~l~~ 231 (571)
T 3cvr_A 179 ----------P-ESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRCREN-RITHIPE------------NILSLDP 231 (571)
T ss_dssp ----------C-TTCCEEECCSS-CCSSCCCCC----------CCEEEECCSS-CCCCCCG------------GGGGSCT
T ss_pred ----------h-CCCCEEECcCC-CCCchhhHHH--hhhcccccceEEecCCC-cceecCH------------HHhcCCC
Confidence 1 66777777765 4555554322 55 77777665 4444544 3344667
Q ss_pred cceeecCCccccccc
Q 006902 545 LQMLHLSYLPILKSI 559 (626)
Q Consensus 545 L~~L~l~~~~~l~~i 559 (626)
|++|++++++--..+
T Consensus 232 L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 232 TCTIILEDNPLSSRI 246 (571)
T ss_dssp TEEEECCSSSCCHHH
T ss_pred CCEEEeeCCcCCCcC
Confidence 777777665433333
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.06 E-value=1.4e-10 Score=108.95 Aligned_cols=154 Identities=19% Similarity=0.264 Sum_probs=108.9
Q ss_pred cccccccccccccccchH-HhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELPEE-LKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
+|++|+++++.+..+|.. ++.+.+|++|++++| .+..+|...+.++++|++|++.+|.+..++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------------- 92 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLP--------------- 92 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccC---------------
Confidence 799999999999998865 689999999999999 689999876789999999999999865321
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
...+..+++|+.|++. ++.-. .+ ....+..+++|+.|+++++. +..+.+..
T Consensus 93 ~~~~~~l~~L~~L~L~--------------------------~N~l~-~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~ 143 (208)
T 2o6s_A 93 NGVFDKLTQLKELALN--------------------------TNQLQ-SL-PDGVFDKLTQLKDLRLYQNQ-LKSVPDGV 143 (208)
T ss_dssp TTTTTTCTTCCEEECC--------------------------SSCCC-CC-CTTTTTTCTTCCEEECCSSC-CSCCCTTT
T ss_pred HhHhcCccCCCEEEcC--------------------------CCcCc-cc-CHhHhccCCcCCEEECCCCc-cceeCHHH
Confidence 1124566666666544 22211 11 11235667888888888764 33333333
Q ss_pred ccccccccCccccCccCEEEEeCCCCCccccccccCCCccEEEEeccCccccccc
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIIS 525 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~ 525 (626)
+. .+++|++|+++++ ++.+.+++|+.|.++.+.....++.
T Consensus 144 ~~---------~l~~L~~L~l~~N------~~~~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 144 FD---------RLTSLQYIWLHDN------PWDCTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TT---------TCTTCCEEECCSC------CBCCCTTTTHHHHHHHHHCTTTBBC
T ss_pred hc---------cCCCccEEEecCC------CeecCCCCHHHHHHHHHhCCceeec
Confidence 43 6889999999987 3345677888888887655545543
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.05 E-value=1.8e-10 Score=112.27 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=118.0
Q ss_pred hhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCceEEEEEechh
Q 006902 332 LLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYH 411 (626)
Q Consensus 332 ~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~ 411 (626)
.+.++..++++.+ .+..++. +..+++|++|++.+|.+..+ ..+..+++|+.|.+..+...
T Consensus 17 ~l~~l~~l~l~~~-~i~~~~~--~~~l~~L~~L~l~~n~i~~l-----------------~~l~~l~~L~~L~L~~N~i~ 76 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDLVS--QKELSGVQNFNGDNSNIQSL-----------------AGMQFFTNLKELHLSHNQIS 76 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSEEC--HHHHTTCSEEECTTSCCCCC-----------------TTGGGCTTCCEEECCSSCCC
T ss_pred HHHHHHHHHhcCC-Ccccccc--hhhcCcCcEEECcCCCcccc-----------------hHHhhCCCCCEEECCCCccC
Confidence 6788999999998 6888984 89999999999999986531 25788899999988766554
Q ss_pred hHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEE
Q 006902 412 ALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTI 491 (626)
Q Consensus 412 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L 491 (626)
.+.. ...+++|+.|++.++.-.. + ..+.. ++|+.|+++++.- ..+ ..+. .+++|+.|++
T Consensus 77 ~~~~----l~~l~~L~~L~L~~N~l~~-l---~~~~~-~~L~~L~L~~N~l-~~~--~~l~---------~l~~L~~L~L 135 (263)
T 1xeu_A 77 DLSP----LKDLTKLEELSVNRNRLKN-L---NGIPS-ACLSRLFLDNNEL-RDT--DSLI---------HLKNLEILSI 135 (263)
T ss_dssp CCGG----GTTCSSCCEEECCSSCCSC-C---TTCCC-SSCCEEECCSSCC-SBS--GGGT---------TCTTCCEEEC
T ss_pred CChh----hccCCCCCEEECCCCccCC-c---Ccccc-CcccEEEccCCcc-CCC--hhhc---------CcccccEEEC
Confidence 4332 3346788888888775432 2 22333 7788888887643 321 2232 6788888888
Q ss_pred eCCCCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcc
Q 006902 492 YSCTKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLP 554 (626)
Q Consensus 492 ~~c~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 554 (626)
++| .++.++.++.+++|+.|++++| .+..+ . .+..+++|++|++++++
T Consensus 136 s~N-~i~~~~~l~~l~~L~~L~L~~N-~i~~~-~------------~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 136 RNN-KLKSIVMLGFLSKLEVLDLHGN-EITNT-G------------GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTS-CCCBCGGGGGCTTCCEEECTTS-CCCBC-T------------TSTTCCCCCEEEEEEEE
T ss_pred CCC-cCCCChHHccCCCCCEEECCCC-cCcch-H------------HhccCCCCCEEeCCCCc
Confidence 885 5666777888888888888877 34433 1 45677888888887754
No 112
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.03 E-value=3e-10 Score=125.63 Aligned_cols=237 Identities=16% Similarity=0.137 Sum_probs=136.2
Q ss_pred CcccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCC-c---cc----
Q 006902 311 SSLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPE-D---SV---- 382 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~-~---~~---- 382 (626)
..++.|++.++.+..++. ..+..|+.+++..+ .+...+. ...+++|+.|++..+.......... . .+
T Consensus 328 ~~L~~L~l~~~~~~~~~~--~~l~~L~~l~l~~n-~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 402 (635)
T 4g8a_A 328 FGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSN-KGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL 402 (635)
T ss_dssp CCCSEEEEESCEESSCCC--CBCTTCCEEEEESC-CSCCBCC--CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEE
T ss_pred hhhhhhhcccccccCcCc--ccchhhhhcccccc-cCCCCcc--cccccccccchhhccccccccccccchhhhhhhhhh
Confidence 367778888877766653 24555666666666 3344443 4566667777766665432100000 0 00
Q ss_pred -cc-CCccchhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeeccc
Q 006902 383 -LF-GGGEVLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRG 460 (626)
Q Consensus 383 -~~-~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 460 (626)
.. .........+..+++|+.+.+.......... ......+.+++.+++..+..... ....+..+++|+.|.++++
T Consensus 403 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~ls~n~l~~~--~~~~~~~~~~L~~L~Ls~N 479 (635)
T 4g8a_A 403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGN 479 (635)
T ss_dssp ECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS-SCTTTTCTTCCEEECTTSCCEEC--CTTTTTTCTTCCEEECTTC
T ss_pred hccccccccccccccccccccchhhhhcccccccc-ccccccccccccccccccccccc--cccccccchhhhhhhhhhc
Confidence 00 0000111223344444444432211111000 00111245566666665533211 1124556778888888887
Q ss_pred CCcceEeeccccccccccCccccCccCEEEEeCCCCCcccc--ccccCCCccEEEEeccCccccccccCccccccccCCC
Q 006902 461 FELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGH 538 (626)
Q Consensus 461 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~ 538 (626)
.....+.+..+. .+++|++|+|++| .+..++ .++++++|+.|+|+++ .+..++.. .
T Consensus 480 ~~~~~~~~~~~~---------~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~-----------~ 537 (635)
T 4g8a_A 480 SFQENFLPDIFT---------ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTF-----------P 537 (635)
T ss_dssp EEGGGEECSCCT---------TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCG-----------G
T ss_pred ccccccCchhhh---------hccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChh-----------H
Confidence 666655566655 7899999999997 566665 3889999999999988 56666542 4
Q ss_pred CCcCCccceeecCCcccccccc-CCCCCC-CCccEEEecCCC
Q 006902 539 ISPFENLQMLHLSYLPILKSIY-WKPLPF-THLKEMEVSGCN 578 (626)
Q Consensus 539 ~~~fp~L~~L~l~~~~~l~~i~-~~~~~l-p~L~~L~i~~C~ 578 (626)
+..+++|++|+++++ .+..++ .....+ ++|++|+++++|
T Consensus 538 ~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 577899999999985 455544 445566 589999998753
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.01 E-value=1.1e-11 Score=134.21 Aligned_cols=206 Identities=15% Similarity=0.058 Sum_probs=131.7
Q ss_pred hhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCceEEEEEech
Q 006902 331 KLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSY 410 (626)
Q Consensus 331 ~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~ 410 (626)
..+.+|+.|+|++| .++.||.+ |++|++|+.|++.++... ...+..+..+....
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~-i~~l~~L~~L~l~~n~~l---------------~~l~~ll~~~~~~~--------- 399 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSE-LESCKELQELEPENKWCL---------------LTIILLMRALDPLL--------- 399 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHH-HHHHHHHHHHCTTCHHHH---------------HHHHHHHHHHCTGG---------
T ss_pred ccCccceeccCChh-hHHhhHHH-HHHHHHHHHhccccchhh---------------hhHHHHHHhccccc---------
Confidence 56889999999999 68999998 999999999998654310 01111111111110
Q ss_pred hhHHHHhhccccccceeEEE-EeccCCCcccc-------ccccccccccccceeecccCCcceEeeccccccccccCccc
Q 006902 411 HALQILLSSNKLKSCIRSLF-LWLAGDATSIV-------DATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFV 482 (626)
Q Consensus 411 ~~~~~l~~~~~~~~~L~~L~-l~~~~~~~~~~-------~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 482 (626)
. .+.....+++|+.|+ +.... ...+. .+..+ +...|+.|.++++. ++.+ |. +. .
T Consensus 400 -~---~~~~l~~l~~L~~L~~l~~n~-~~~L~~l~l~~n~i~~l-~~~~L~~L~Ls~n~-l~~l-p~-~~---------~ 461 (567)
T 1dce_A 400 -Y---EKETLQYFSTLKAVDPMRAAY-LDDLRSKFLLENSVLKM-EYADVRVLHLAHKD-LTVL-CH-LE---------Q 461 (567)
T ss_dssp -G---HHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHH-HHTTCSEEECTTSC-CSSC-CC-GG---------G
T ss_pred -C---CHHHHHHHHhcccCcchhhcc-cchhhhhhhhccccccc-CccCceEEEecCCC-CCCC-cC-cc---------c
Confidence 0 011111123333333 11110 00000 00111 12368899999864 3333 33 33 7
Q ss_pred cCccCEEEEeCCCCCcccc-ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccc--
Q 006902 483 FRSLHHVTIYSCTKLKDST-FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSI-- 559 (626)
Q Consensus 483 l~~L~~L~L~~c~~l~~l~-~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i-- 559 (626)
+++|+.|+|++| .+..+| .++.+++|+.|+|+++ .+..++ .++.+++|++|+++++ .+..+
T Consensus 462 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-------------~l~~l~~L~~L~Ls~N-~l~~~~~ 525 (567)
T 1dce_A 462 LLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-------------GVANLPRLQELLLCNN-RLQQSAA 525 (567)
T ss_dssp GTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-------------GGTTCSSCCEEECCSS-CCCSSST
T ss_pred cccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-------------ccCCCCCCcEEECCCC-CCCCCCC
Confidence 899999999997 566777 4999999999999988 455554 3577999999999985 67766
Q ss_pred cCCCCCCCCccEEEecCCCCCCCCCCCCCc---CcCcceEE
Q 006902 560 YWKPLPFTHLKEMEVSGCNQLEKHPLDSNS---AKERKVVI 597 (626)
Q Consensus 560 ~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~---~l~~l~~~ 597 (626)
|.....+++|+.|+++++ .+..+|..... .+++|+..
T Consensus 526 p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 526 IQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred cHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCcc
Confidence 677889999999999997 57777764432 35566554
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.98 E-value=2.1e-10 Score=125.96 Aligned_cols=138 Identities=16% Similarity=0.108 Sum_probs=64.7
Q ss_pred hhhcccchhcccCCCCccc-cchhhhc-CCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCceEEEEEe
Q 006902 331 KLLVNLKCLNLRGTGQLNK-IPRQLIS-KFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLG 408 (626)
Q Consensus 331 ~~L~~L~~L~l~~~~~l~~-lP~~~i~-~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~ 408 (626)
..+.+|++|++++|. +.. .+.. +. .+++|++|++.+|...+ ......-..++++|+.|++..+
T Consensus 102 ~~~~~L~~L~L~~~~-~~~~~~~~-l~~~~~~L~~L~L~~~~~~~-------------~~~l~~~~~~~~~L~~L~L~~~ 166 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-VTDDCLEL-IAKSFKNFKVLVLSSCEGFS-------------TDGLAAIAATCRNLKELDLRES 166 (594)
T ss_dssp HHCTTCCEEEEESCB-CCHHHHHH-HHHHCTTCCEEEEESCEEEE-------------HHHHHHHHHHCTTCCEEECTTC
T ss_pred HhCCCCCeEEeeCcE-EcHHHHHH-HHHhCCCCcEEeCCCcCCCC-------------HHHHHHHHHhCCCCCEEeCcCC
Confidence 455667777777663 332 2333 33 56677777776663211 1112223335666666665433
Q ss_pred chh--hHHHHhhccccccceeEEEEeccCCCcccccccc-ccccccccceeecccCCcceEeeccccccccccCccccCc
Q 006902 409 SYH--ALQILLSSNKLKSCIRSLFLWLAGDATSIVDATA-FADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRS 485 (626)
Q Consensus 409 ~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~ 485 (626)
... ....+......+++|+.|++.++...-....+.. ...+++|+.|.+.+|..+.. .+..+. .+++
T Consensus 167 ~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~---------~~~~ 236 (594)
T 2p1m_B 167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQ---------RAPQ 236 (594)
T ss_dssp EEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHH---------HCTT
T ss_pred ccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHh---------cCCc
Confidence 211 1112222233355666666666541101101111 12346667777766654443 233332 4566
Q ss_pred cCEEEEeC
Q 006902 486 LHHVTIYS 493 (626)
Q Consensus 486 L~~L~L~~ 493 (626)
|++|.+.+
T Consensus 237 L~~L~l~~ 244 (594)
T 2p1m_B 237 LEELGTGG 244 (594)
T ss_dssp CSEEECSB
T ss_pred ceEccccc
Confidence 66665443
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.98 E-value=9.8e-10 Score=118.44 Aligned_cols=183 Identities=14% Similarity=0.037 Sum_probs=132.9
Q ss_pred ccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCceEEEEEechhhHH
Q 006902 335 NLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ 414 (626)
Q Consensus 335 ~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~ 414 (626)
+|++|++++| .+..+|.+ + +++|++|++++|.+..+ + ..+++|+.|+++.+....+.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~-l--~~~L~~L~Ls~N~l~~i----------------p---~~l~~L~~L~Ls~N~l~~ip 116 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDN-L--PPQITVLEITQNALISL----------------P---ELPASLEYLDACDNRLSTLP 116 (571)
T ss_dssp TCSEEECCSS-CCSCCCSC-C--CTTCSEEECCSSCCSCC----------------C---CCCTTCCEEECCSSCCSCCC
T ss_pred CccEEEeCCC-CCCccCHh-H--cCCCCEEECcCCCCccc----------------c---cccCCCCEEEccCCCCCCcc
Confidence 8999999999 68999997 5 38999999999987532 2 34789999999877665532
Q ss_pred HHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCC
Q 006902 415 ILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSC 494 (626)
Q Consensus 415 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c 494 (626)
. +..+|+.|++.++.-.. + .. .+++|+.|+++++... .+ +. .+++|++|+|++|
T Consensus 117 ~------l~~~L~~L~Ls~N~l~~-l---p~--~l~~L~~L~Ls~N~l~-~l-p~------------~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 117 E------LPASLKHLDVDNNQLTM-L---PE--LPALLEYINADNNQLT-ML-PE------------LPTSLEVLSVRNN 170 (571)
T ss_dssp C------CCTTCCEEECCSSCCSC-C---CC--CCTTCCEEECCSSCCS-CC-CC------------CCTTCCEEECCSS
T ss_pred h------hhcCCCEEECCCCcCCC-C---CC--cCccccEEeCCCCccC-cC-CC------------cCCCcCEEECCCC
Confidence 2 23389999999886442 3 22 5789999999976532 22 11 4689999999997
Q ss_pred CCCccccccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccCCCCCCCCccEEEe
Q 006902 495 TKLKDSTFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYWKPLPFTHLKEMEV 574 (626)
Q Consensus 495 ~~l~~l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~~~~~lp~L~~L~i 574 (626)
.++.+|.++ ++|+.|+|++| .+..++. +.. . -....+.|++|+++++ .++.+|.....+++|+.|++
T Consensus 171 -~L~~lp~l~--~~L~~L~Ls~N-~L~~lp~--~~~---~---L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 171 -QLTFLPELP--ESLEALDVSTN-LLESLPA--VPV---R---NHHSEETEIFFRCREN-RITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp -CCSCCCCCC--TTCCEEECCSS-CCSSCCC--CC--------------CCEEEECCSS-CCCCCCGGGGGSCTTEEEEC
T ss_pred -CCCCcchhh--CCCCEEECcCC-CCCchhh--HHH---h---hhcccccceEEecCCC-cceecCHHHhcCCCCCEEEe
Confidence 566677754 99999999988 5655543 100 0 0111233399999984 78889887888999999999
Q ss_pred cCCCC
Q 006902 575 SGCNQ 579 (626)
Q Consensus 575 ~~C~~ 579 (626)
++++-
T Consensus 238 ~~N~l 242 (571)
T 3cvr_A 238 EDNPL 242 (571)
T ss_dssp CSSSC
T ss_pred eCCcC
Confidence 99854
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.96 E-value=6e-10 Score=105.45 Aligned_cols=147 Identities=18% Similarity=0.275 Sum_probs=86.6
Q ss_pred cccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHH
Q 006902 314 ELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQE 393 (626)
Q Consensus 314 r~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (626)
+.+++++++++.+|..+. .+|+.|++++| .+..+|...+.++++|++|++.+|.+.. ..+..
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~---------------~~~~~ 75 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISE---------------LAPDA 75 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCE---------------ECTTT
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCC---------------cCHHH
Confidence 356778888888887665 67889999988 5888887558888999999998887643 12233
Q ss_pred hhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccc
Q 006902 394 LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEI 473 (626)
Q Consensus 394 l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~ 473 (626)
+.++++|+.|+++.+.. . .+ ....+..+++|+.|+++++. +..+.+..+.
T Consensus 76 ~~~l~~L~~L~Ls~N~l--------------------------~-~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~- 125 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKI--------------------------T-EL-PKSLFEGLFSLQLLLLNANK-INCLRVDAFQ- 125 (220)
T ss_dssp TTTCSSCCEEECCSSCC--------------------------C-CC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-
T ss_pred hhCCcCCCEEECCCCcC--------------------------C-cc-CHhHccCCCCCCEEECCCCC-CCEeCHHHcC-
Confidence 55555555554442211 1 11 11123445566666666543 2222333333
Q ss_pred cccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEEecc
Q 006902 474 VRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDC 517 (626)
Q Consensus 474 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~ 517 (626)
.+++|+.|+|+++ .+..++. +..+++|+.|+|+++
T Consensus 126 --------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 126 --------DLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp --------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --------CCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 4566666666664 3444432 555666666666554
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.93 E-value=7.7e-10 Score=113.28 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=52.3
Q ss_pred cccccccccccccchHHhhhcccchhcccCCCCccccchhhhc-CCCcccEEEccCCCCCcccCCCCcccccCCccchhH
Q 006902 314 ELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLIS-KFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQ 392 (626)
Q Consensus 314 r~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~-~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (626)
++++++++++..+|..+.. ++++|+|++| .+..+|...+. ++++|++|++.+|.+..+ .+.
T Consensus 21 ~~l~c~~~~l~~iP~~~~~--~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i---------------~~~ 82 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS--YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFI---------------SSE 82 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT--TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEE---------------CTT
T ss_pred CEEEeCCCCcCccCccCCC--CCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCcc---------------Chh
Confidence 4577777888888876543 5788888888 57888776455 788888888888876532 122
Q ss_pred HhhccCCCceEEEEEe
Q 006902 393 ELLGLKYLEVLELTLG 408 (626)
Q Consensus 393 ~l~~L~~L~~L~i~~~ 408 (626)
.+.++++|+.|+++.+
T Consensus 83 ~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred hccCCCCCCEEECCCC
Confidence 3566666666665543
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.93 E-value=1.8e-09 Score=102.84 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=39.8
Q ss_pred ccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCC
Q 006902 313 LELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 313 Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 372 (626)
...++.+++.+..+|..+. .+|++|++++| .+..++...+.++++|++|++.+|.+.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~ 77 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLG 77 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCC
Confidence 3456677777777776554 67888888887 466664444777888888888877654
No 119
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.89 E-value=3e-09 Score=111.02 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=84.8
Q ss_pred CcccchHHHHHHHHHHH-hc------CCCeEEEE--EcCCCchHHHHHHHHHHHHhhcc---CCCC-eEEEEEecCccCH
Q 006902 158 PTIVGLQSQLEQVWRCL-AE------ESAGIIGL--YGMGGVGKTTLLTRINNKFLENQ---NNFD-CVIWVVVSKELRL 224 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~---~~F~-~~~wv~~s~~~~~ 224 (626)
..++||+++++.+.+++ .. .....+.| +|++|+||||||+.+++.. ... ..|+ .++|+.+....+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCH
Confidence 67899999999999998 42 24556666 9999999999999999877 221 1233 3678887777789
Q ss_pred HHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCc
Q 006902 225 EKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLG--EKRFVLLLDDIWER 273 (626)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~llvlDdv~~~ 273 (626)
..++..++.+++..... ...+.......+...+. +++++||+||++..
T Consensus 101 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSM 150 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHH
T ss_pred HHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 99999999998764321 22344555666666664 67999999999763
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.88 E-value=2.4e-09 Score=101.30 Aligned_cols=147 Identities=15% Similarity=0.194 Sum_probs=84.2
Q ss_pred cccccccccccccchHHhhhcccchhcccCCCCcccc-chhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhH
Q 006902 314 ELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKI-PRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQ 392 (626)
Q Consensus 314 r~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~l-P~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (626)
+.++++++.++++|..+.. .+++|++++| .+..+ |.+.+.++++|++|++.+|.+..+ .+.
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i---------------~~~ 75 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDI---------------EEG 75 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEE---------------CTT
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEE---------------CHH
Confidence 4678888888888876643 4678888888 57777 344467888888888888875431 111
Q ss_pred HhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecccc
Q 006902 393 ELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTE 472 (626)
Q Consensus 393 ~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~ 472 (626)
.+.++++|+.|.++ ++.-. .+ ....+..+++|++|+++++. +..+.+..+.
T Consensus 76 ~~~~l~~L~~L~Ls--------------------------~N~l~-~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 126 (220)
T 2v70_A 76 AFEGASGVNEILLT--------------------------SNRLE-NV-QHKMFKGLESLKTLMLRSNR-ITCVGNDSFI 126 (220)
T ss_dssp TTTTCTTCCEEECC--------------------------SSCCC-CC-CGGGGTTCSSCCEEECTTSC-CCCBCTTSST
T ss_pred HhCCCCCCCEEECC--------------------------CCccC-cc-CHhHhcCCcCCCEEECCCCc-CCeECHhHcC
Confidence 24444545444433 32211 11 11234555666666666543 2222233333
Q ss_pred ccccccCccccCccCEEEEeCCCCCccc-c-ccccCCCccEEEEecc
Q 006902 473 IVRKRREPFVFRSLHHVTIYSCTKLKDS-T-FLVFAPNLKSLTLFDC 517 (626)
Q Consensus 473 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~L~~L~~L~L~~~ 517 (626)
.+++|++|+|++| .+..+ | .+..+++|+.|+|+++
T Consensus 127 ---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 127 ---------GLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp ---------TCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred ---------CCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc
Confidence 5566666666664 34443 2 2556666666666655
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.86 E-value=2.5e-09 Score=101.86 Aligned_cols=130 Identities=21% Similarity=0.279 Sum_probs=92.1
Q ss_pred Cccccccccccccccc-chHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.+|++|+|++|.+..+ |..++.+.+|++|+|++| .+..+|.+.+.++++|++|++++|.+..++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-------------- 104 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLP-------------- 104 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccC--------------
Confidence 4799999999999987 677899999999999999 689999876799999999999999875421
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeec
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKID 469 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~ 469 (626)
...+..+++|+.|.+..+... .+ ...+..+++|+.|+++++. +..+.+.
T Consensus 105 -~~~~~~l~~L~~L~Ls~N~l~---------------------------~l--p~~~~~l~~L~~L~L~~N~-l~~~~~~ 153 (229)
T 3e6j_A 105 -SAVFDRLVHLKELFMCCNKLT---------------------------EL--PRGIERLTHLTHLALDQNQ-LKSIPHG 153 (229)
T ss_dssp -TTTTTTCTTCCEEECCSSCCC---------------------------SC--CTTGGGCTTCSEEECCSSC-CCCCCTT
T ss_pred -hhHhCcchhhCeEeccCCccc---------------------------cc--CcccccCCCCCEEECCCCc-CCccCHH
Confidence 122456666666665433221 11 0134566777777777653 3333333
Q ss_pred cccccccccCccccCccCEEEEeCCC
Q 006902 470 YTEIVRKRREPFVFRSLHHVTIYSCT 495 (626)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~L~L~~c~ 495 (626)
.+. .+++|+.|++.++.
T Consensus 154 ~~~---------~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 154 AFD---------RLSSLTHAYLFGNP 170 (229)
T ss_dssp TTT---------TCTTCCEEECTTSC
T ss_pred HHh---------CCCCCCEEEeeCCC
Confidence 333 67788888888764
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.83 E-value=2.2e-09 Score=109.90 Aligned_cols=156 Identities=26% Similarity=0.313 Sum_probs=105.8
Q ss_pred CcccccccccccccccchH-Hh-hhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCcc
Q 006902 311 SSLELLDISHTYIQELPEE-LK-LLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGE 388 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~~-i~-~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 388 (626)
..+++|+|++|.+..+|.. +. .+.+|++|+|++| .+..+|...+.++++|++|++++|.+..++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~------------- 104 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLD------------- 104 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEEC-------------
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCC-------------
Confidence 4689999999999999865 44 8999999999999 689998766999999999999999865321
Q ss_pred chhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEee
Q 006902 389 VLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKI 468 (626)
Q Consensus 389 ~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~ 468 (626)
...+..+++|+.|++. ++... .+ ....+..+++|+.|+++++. +..+..
T Consensus 105 --~~~~~~l~~L~~L~L~--------------------------~N~i~-~~-~~~~~~~l~~L~~L~L~~N~-l~~l~~ 153 (361)
T 2xot_A 105 --EFLFSDLQALEVLLLY--------------------------NNHIV-VV-DRNAFEDMAQLQKLYLSQNQ-ISRFPV 153 (361)
T ss_dssp --TTTTTTCTTCCEEECC--------------------------SSCCC-EE-CTTTTTTCTTCCEEECCSSC-CCSCCG
T ss_pred --HHHhCCCcCCCEEECC--------------------------CCccc-EE-CHHHhCCcccCCEEECCCCc-CCeeCH
Confidence 1225556666666554 32211 11 12246667788888887654 333322
Q ss_pred ccccccccccCccccCccCEEEEeCCCCCccccc--cccCCCc--cEEEEeccC
Q 006902 469 DYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNL--KSLTLFDCG 518 (626)
Q Consensus 469 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L--~~L~L~~~~ 518 (626)
..+. ....+++|+.|+|+++ .+..++. +..++++ +.|+|.+++
T Consensus 154 ~~~~------~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 154 ELIK------DGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp GGTC----------CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred HHhc------CcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 2221 0025788888888885 5666663 6677774 778887653
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.81 E-value=1e-08 Score=105.95 Aligned_cols=142 Identities=16% Similarity=0.073 Sum_probs=98.6
Q ss_pred CcccchHHHHHHHHHHHhc----CCCeEEEEEcCCCchHHHHHHHHHHHHhhc---cCC--CCeEEEEEecCcc-CHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTRINNKFLEN---QNN--FDCVIWVVVSKEL-RLEKI 227 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~--F~~~~wv~~s~~~-~~~~l 227 (626)
..++||+++++.+.+++.. +....+.|+|++|+||||+|+.+++..... ... ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6789999999999887754 456789999999999999999999976211 011 3357888887777 88889
Q ss_pred HHHHHHHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc--cccc-cCCCCCCCCCCcEEEEecCCh
Q 006902 228 QEDIGKKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWERVD--LTEV-GVPLPSPQNTTSKVVFTTRFI 300 (626)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~~--~~~l-~~~~~~~~~~~s~iivTtr~~ 300 (626)
+..++..+..................+...+..++.+||+||++.... +... ...+. ....+..+|+||+..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~-~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLL-RSDANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHH-TSSSCEEEEEECSST
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHh-cCCcceEEEEEECCC
Confidence 999888873222112334456667778888887777999999976422 1222 21222 111577888888864
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=6.1e-09 Score=105.12 Aligned_cols=241 Identities=15% Similarity=0.076 Sum_probs=125.2
Q ss_pred Cccccccccccccc--------------------ccc-hHHhh--------hcccchhcccCCCCccccchhhhcCCCcc
Q 006902 311 SSLELLDISHTYIQ--------------------ELP-EELKL--------LVNLKCLNLRGTGQLNKIPRQLISKFSRL 361 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~--------------------~LP-~~i~~--------L~~L~~L~l~~~~~l~~lP~~~i~~L~~L 361 (626)
.+|++|||+++.+. .+| ..+.. +.+|+.|++.. .++.|+...+.++++|
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCccc
Confidence 37899999999887 334 24456 78888888887 3788888778888888
Q ss_pred cEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCceEEEEEechhhHH---HHhh-cccccccee-EEEEeccCC
Q 006902 362 RVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVLELTLGSYHALQ---ILLS-SNKLKSCIR-SLFLWLAGD 436 (626)
Q Consensus 362 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~---~l~~-~~~~~~~L~-~L~l~~~~~ 436 (626)
+.|++..+....++.. .+..+.++..+ ......... .+.. ....+..|+ .+.+.....
T Consensus 127 ~~l~l~~n~i~~i~~~---------------aF~~~~~l~~l--~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~ 189 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPE---------------ALADSVTAIFI--PLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGK 189 (329)
T ss_dssp CEEEBCCSSCCEECTT---------------SSCTTTCEEEE--CTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCC
T ss_pred ceEEcCCCCccccchh---------------hhcCCCceEEe--cCcchhhhhccccccccccccccccceeEEecCCCc
Confidence 8888887765432111 11222222211 111100000 0000 000112222 222222111
Q ss_pred CccccccccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEE
Q 006902 437 ATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTL 514 (626)
Q Consensus 437 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L 514 (626)
.... ....-..+.++..+.+.+.-... ....+. ..+++|+.|+|.++ .++.++. +.++++|+.|+|
T Consensus 190 l~~~-~~~~~~~~~~~~~l~~~~~l~~~--~~~~l~--------~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 190 LEDE-IMKAGLQPRDINFLTIEGKLDNA--DFKLIR--------DYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp HHHH-HHHTTCCGGGCSEEEEEECCCHH--HHHHHH--------HHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEEC
T ss_pred HHHH-HhhcccCccccceEEEeeeecHH--HHHHHH--------HhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEEC
Confidence 1000 00001123344444444321111 011111 13677788887764 4666663 667778888877
Q ss_pred eccCccccccccCccccccccCCCCCcCCccc-eeecCCccccccccCC-CCCCCCccEEEecCCCCCCCCCCCCCcCcC
Q 006902 515 FDCGAMEEIISVGKIAETPEMMGHISPFENLQ-MLHLSYLPILKSIYWK-PLPFTHLKEMEVSGCNQLEKHPLDSNSAKE 592 (626)
Q Consensus 515 ~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~-~L~l~~~~~l~~i~~~-~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~ 592 (626)
.+. ++.++.. .+.++++|+ .+.+.+ .++.|... +..|++|++|.+.+ .+++.++.+......
T Consensus 258 ~~n--i~~I~~~-----------aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 258 PHN--LKTIGQR-----------VFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGV 321 (329)
T ss_dssp CTT--CCEECTT-----------TTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTC
T ss_pred Ccc--cceehHH-----------HhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCc
Confidence 763 6666543 345677777 777765 56666533 55677788887755 467777766555566
Q ss_pred cceEEe
Q 006902 593 RKVVIR 598 (626)
Q Consensus 593 ~l~~~~ 598 (626)
+|+.++
T Consensus 322 ~L~~ly 327 (329)
T 3sb4_A 322 PSKLIY 327 (329)
T ss_dssp CCCEEE
T ss_pred chhhhc
Confidence 666554
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.80 E-value=2.4e-09 Score=96.62 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=84.1
Q ss_pred Cccccccccccccc--ccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCcc
Q 006902 311 SSLELLDISHTYIQ--ELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGE 388 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~--~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 388 (626)
.+|++|++++|.+. .+|..++.+.+|++|++++| .+..+ .. +..+++|++|++.+|.+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~Ls~N~l~~--------------- 85 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SN-LPKLPKLKKLELSENRIFG--------------- 85 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SS-CCCCSSCCEEEEESCCCCS---------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hh-hccCCCCCEEECcCCcCch---------------
Confidence 47888999999887 88888888999999999998 47777 43 8889999999999887642
Q ss_pred chhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEee
Q 006902 389 VLIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKI 468 (626)
Q Consensus 389 ~~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~ 468 (626)
..+..+.++++|+.|++..+.... ++....+..+++|+.|+++++.... +.+
T Consensus 86 ~~~~~~~~l~~L~~L~Ls~N~l~~---------------------------~~~~~~l~~l~~L~~L~l~~N~l~~-~~~ 137 (168)
T 2ell_A 86 GLDMLAEKLPNLTHLNLSGNKLKD---------------------------ISTLEPLKKLECLKSLDLFNCEVTN-LND 137 (168)
T ss_dssp CCCHHHHHCTTCCEEECBSSSCCS---------------------------SGGGGGGSSCSCCCEEECCSSGGGT-STT
T ss_pred HHHHHHhhCCCCCEEeccCCccCc---------------------------chhHHHHhcCCCCCEEEeeCCcCcc-hHH
Confidence 123334445566555554332221 1112345566677777777654332 111
Q ss_pred ---ccccccccccCccccCccCEEEEeCCC
Q 006902 469 ---DYTEIVRKRREPFVFRSLHHVTIYSCT 495 (626)
Q Consensus 469 ---~~~~~~~~~~~~~~l~~L~~L~L~~c~ 495 (626)
..+. .+++|++|++++|.
T Consensus 138 ~~~~~~~---------~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 138 YRESVFK---------LLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHHHHT---------TCSSCCEETTEETT
T ss_pred HHHHHHH---------hCccCcEecCCCCC
Confidence 1222 56777777777763
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.78 E-value=2.2e-08 Score=90.17 Aligned_cols=138 Identities=15% Similarity=0.093 Sum_probs=98.9
Q ss_pred cccceeEEEEeccCCC-ccccccccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccc
Q 006902 422 LKSCIRSLFLWLAGDA-TSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDS 500 (626)
Q Consensus 422 ~~~~L~~L~l~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 500 (626)
..++|+.|++.++.-. ..++ ..+..+++|+.|++++|. +..+ ..+. .+++|++|++++|.....+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~--~~~~~l~~L~~L~l~~n~-l~~~--~~~~---------~l~~L~~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE--GLTAEFVNLEFLSLINVG-LISV--SNLP---------KLPKLKKLELSENRIFGGL 87 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS--SCCGGGGGCCEEEEESSC-CCCC--SSCC---------CCSSCCEEEEESCCCCSCC
T ss_pred CcccCCEEECCCCCCChhhHH--HHHHhCCCCCEEeCcCCC-CCCh--hhhc---------cCCCCCEEECcCCcCchHH
Confidence 3578999999987643 1221 235788999999999876 4432 3343 7899999999998544436
Q ss_pred cc-cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccC----CCCCCCCccEEEec
Q 006902 501 TF-LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYW----KPLPFTHLKEMEVS 575 (626)
Q Consensus 501 ~~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~----~~~~lp~L~~L~i~ 575 (626)
|. +..+++|+.|++++| .+..++.. ..+..+++|++|+++++ .+..++. ....+|+|++|++.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~----------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGN-KLKDISTL----------EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CHHHHHCTTCCEEECBSS-SCCSSGGG----------GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred HHHHhhCCCCCEEeccCC-ccCcchhH----------HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCC
Confidence 64 556999999999988 55555321 04577899999999986 4556554 45679999999999
Q ss_pred CCCCCCCCCCC
Q 006902 576 GCNQLEKHPLD 586 (626)
Q Consensus 576 ~C~~L~~lP~~ 586 (626)
+| .+..+|..
T Consensus 156 ~n-~~~~~~~~ 165 (168)
T 2ell_A 156 DR-EDQEAPDS 165 (168)
T ss_dssp ET-TSCBCCSS
T ss_pred CC-Chhhcccc
Confidence 98 45666653
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.77 E-value=5.3e-09 Score=92.20 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=60.1
Q ss_pred ccccccccccccc--ccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 312 SLELLDISHTYIQ--ELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 312 ~Lr~L~L~~~~i~--~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
++++|++++|.+. .+|..++.+.+|++|++++| .+..+ .. +.++++|++|++++|.+.+ .
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~Ls~n~i~~---------------~ 79 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-AN-LPKLNKLKKLELSDNRVSG---------------G 79 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TT-CCCCTTCCEEECCSSCCCS---------------C
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hh-hhcCCCCCEEECCCCcccc---------------h
Confidence 6888999999887 88888888899999999988 57777 33 8889999999998887642 2
Q ss_pred hhHHhhccCCCceEEEEEec
Q 006902 390 LIQELLGLKYLEVLELTLGS 409 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~ 409 (626)
.+..+..+++|+.|+++.+.
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~ 99 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNK 99 (149)
T ss_dssp THHHHHHCTTCCEEECTTSC
T ss_pred HHHHhhhCCCCCEEECCCCc
Confidence 34445556666666655443
No 128
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.74 E-value=1.3e-08 Score=103.61 Aligned_cols=133 Identities=17% Similarity=0.141 Sum_probs=89.1
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc------CHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL------RLEKIQEDI 231 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~------~~~~l~~~i 231 (626)
..++||+++++.+.+++..+ +++.|+|++|+|||||++.+.+.. . .+|+++.... +...+.+.+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHH
Confidence 57899999999999998764 799999999999999999998754 1 6788765543 566677777
Q ss_pred HHHhCCC--------------C--CccCCcCHHHHHHHHHHHhCC-CcEEEEEeCCCCccc---------cccccCCCCC
Q 006902 232 GKKIGLF--------------D--DSWKNKSFEEKAVDILRRLGE-KRFVLLLDDIWERVD---------LTEVGVPLPS 285 (626)
Q Consensus 232 ~~~l~~~--------------~--~~~~~~~~~~~~~~l~~~l~~-k~~llvlDdv~~~~~---------~~~l~~~~~~ 285 (626)
.+.+... . ..............+.+.... ++.+||+||++.... +..+....
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-- 159 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-- 159 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH--
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH--
Confidence 6655420 0 000123455555566555542 389999999976432 11121111
Q ss_pred CCCCCcEEEEecCChHH
Q 006902 286 PQNTTSKVVFTTRFIDV 302 (626)
Q Consensus 286 ~~~~~s~iivTtr~~~v 302 (626)
+...+.++|+|++...+
T Consensus 160 ~~~~~~~~il~g~~~~~ 176 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGL 176 (350)
T ss_dssp HHCTTEEEEEEESSHHH
T ss_pred HhcCCeEEEEECCcHHH
Confidence 12246789999887654
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.73 E-value=9.1e-09 Score=97.24 Aligned_cols=131 Identities=18% Similarity=0.303 Sum_probs=91.3
Q ss_pred Ccccccccccccccccch-HHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 311 SSLELLDISHTYIQELPE-ELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
..+++|+|++|.+..+|. .+..+.+|++|+|++| .+..++...+.++++|++|++++|.+..++.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~------------- 97 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPK------------- 97 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCCT-------------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccCH-------------
Confidence 378999999999999876 7899999999999999 5888844449999999999999998764211
Q ss_pred hhHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeec
Q 006902 390 LIQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKID 469 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~ 469 (626)
..+..+++|+.|.+..+.. . .+ ....+..+++|+.|+++++. +..+.+.
T Consensus 98 --~~f~~l~~L~~L~L~~N~l--------------------------~-~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 146 (220)
T 2v9t_B 98 --SLFEGLFSLQLLLLNANKI--------------------------N-CL-RVDAFQDLHNLNLLSLYDNK-LQTIAKG 146 (220)
T ss_dssp --TTTTTCTTCCEEECCSSCC--------------------------C-CC-CTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred --hHccCCCCCCEEECCCCCC--------------------------C-Ee-CHHHcCCCCCCCEEECCCCc-CCEECHH
Confidence 1145566666665543321 1 11 11245667778888887654 3333333
Q ss_pred cccccccccCccccCccCEEEEeCCC
Q 006902 470 YTEIVRKRREPFVFRSLHHVTIYSCT 495 (626)
Q Consensus 470 ~~~~~~~~~~~~~l~~L~~L~L~~c~ 495 (626)
.+. .+++|+.|+|+++.
T Consensus 147 ~~~---------~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 147 TFS---------PLRAIQTMHLAQNP 163 (220)
T ss_dssp TTT---------TCTTCCEEECCSSC
T ss_pred HHh---------CCCCCCEEEeCCCC
Confidence 343 67888888888764
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.69 E-value=3e-08 Score=102.29 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=95.1
Q ss_pred CcccchHHHHHHHHHHHhc----CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCC-CCeEEEEEecCccCHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNN-FDCVIWVVVSKELRLEKIQEDIG 232 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-F~~~~wv~~s~~~~~~~l~~~i~ 232 (626)
..++||+++++.+.+++.. .....+.|+|++|+||||||+.+++... .... -...+|+.+....+...+...++
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLH-KKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHH-HHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999873 4567899999999999999999999772 1110 23577888777778888888888
Q ss_pred HHhCCCCCccCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCcc------ccccccCCCCCC-CCCCcEEEEecCChHH
Q 006902 233 KKIGLFDDSWKNKSFEEKAVDILRRLG--EKRFVLLLDDIWERV------DLTEVGVPLPSP-QNTTSKVVFTTRFIDV 302 (626)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~llvlDdv~~~~------~~~~l~~~~~~~-~~~~s~iivTtr~~~v 302 (626)
..++..... ...+.......+...+. +++.+||+|+++... .+..+..... . ...+..+|+||+....
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~-~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINS-EVNKSKISFIGITNDVKF 175 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHH-SCCC--EEEEEEESCGGG
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchh-hcCCCeEEEEEEECCCCh
Confidence 877654321 22345555566666654 458999999996532 1222211110 0 1235567788876544
No 131
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.68 E-value=5.3e-08 Score=99.29 Aligned_cols=133 Identities=14% Similarity=0.180 Sum_probs=83.2
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-----cCHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-----LRLEKIQEDIG 232 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-----~~~~~l~~~i~ 232 (626)
..++||+++++.+.+ +.. +++.|+|++|+|||||++.+.+.. .. ..+|+.+... .+...+...+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 678999999999999 765 699999999999999999999876 22 2578887643 34455555544
Q ss_pred HHhC--------------C------CCC--cc-----CCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc-----cccccc
Q 006902 233 KKIG--------------L------FDD--SW-----KNKSFEEKAVDILRRLGEKRFVLLLDDIWERV-----DLTEVG 280 (626)
Q Consensus 233 ~~l~--------------~------~~~--~~-----~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~-----~~~~l~ 280 (626)
+.+. . +.. .. ...........+.+... ++++||+||++... ++..+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 4331 0 000 00 01234444444444322 49999999996532 222222
Q ss_pred CCCCCCCCCCcEEEEecCChHH
Q 006902 281 VPLPSPQNTTSKVVFTTRFIDV 302 (626)
Q Consensus 281 ~~~~~~~~~~s~iivTtr~~~v 302 (626)
..+. +...+.++|+|++....
T Consensus 162 ~~~~-~~~~~~~~i~~g~~~~~ 182 (357)
T 2fna_A 162 AYAY-DNLKRIKFIMSGSEMGL 182 (357)
T ss_dssp HHHH-HHCTTEEEEEEESSHHH
T ss_pred HHHH-HcCCCeEEEEEcCchHH
Confidence 2221 22246789999997654
No 132
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.68 E-value=1.3e-07 Score=97.59 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=98.3
Q ss_pred CcccchHHHHHHHHHHHhc----CCCe--EEEEEcCCCchHHHHHHHHHHHHhhccCC-CCeEEEEEecCccCHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE----ESAG--IIGLYGMGGVGKTTLLTRINNKFLENQNN-FDCVIWVVVSKELRLEKIQED 230 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-F~~~~wv~~s~~~~~~~l~~~ 230 (626)
+.++||+++++.+.+++.. .... .+.|+|++|+||||+|+.+.+.. ... -..++|+.++...+...+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5789999999999999875 3334 89999999999999999999987 232 135778888888888899999
Q ss_pred HHHHhCCCCCccCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCc--cccccccCCCCCC-CC---CCcEEEEecCChHH
Q 006902 231 IGKKIGLFDDSWKNKSFEEKAVDILRRLG--EKRFVLLLDDIWER--VDLTEVGVPLPSP-QN---TTSKVVFTTRFIDV 302 (626)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~llvlDdv~~~--~~~~~l~~~~~~~-~~---~~s~iivTtr~~~v 302 (626)
++..++..... ...........+...+. +++.++|+||++.. .....+...+. . .. .+..+|++|+....
T Consensus 94 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~-~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 94 IARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQ-EADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTT-CHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHH-hCCCCCcCCEEEEEEECCchH
Confidence 99988754321 23345555556655553 66889999999764 22333322221 1 11 36678888776554
Q ss_pred H
Q 006902 303 C 303 (626)
Q Consensus 303 a 303 (626)
.
T Consensus 172 ~ 172 (389)
T 1fnn_A 172 L 172 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.64 E-value=2.3e-09 Score=99.55 Aligned_cols=73 Identities=22% Similarity=0.185 Sum_probs=51.1
Q ss_pred cccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCc
Q 006902 322 YIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLE 401 (626)
Q Consensus 322 ~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 401 (626)
.++.+|..++.+.+|++|++++| .+..+| . +.++++|++|++.+|.+.. .+..+..+++|+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~-~~~l~~L~~L~l~~n~l~~----------------l~~~~~~~~~L~ 96 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTN-NIEKIS-S-LSGMENLRILSLGRNLIKK----------------IENLDAVADTLE 96 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEE-EESCCC-C-HHHHTTCCEEEEEEEEECS----------------CSSHHHHHHHCS
T ss_pred cHhhhhHHHhcCCCCCEEECCCC-CCcccc-c-cccCCCCCEEECCCCCccc----------------ccchhhcCCcCC
Confidence 45566668888888999999888 578888 4 8888888888888886542 222344556666
Q ss_pred eEEEEEechhhH
Q 006902 402 VLELTLGSYHAL 413 (626)
Q Consensus 402 ~L~i~~~~~~~~ 413 (626)
.|++..+....+
T Consensus 97 ~L~L~~N~l~~l 108 (198)
T 1ds9_A 97 ELWISYNQIASL 108 (198)
T ss_dssp EEEEEEEECCCH
T ss_pred EEECcCCcCCcC
Confidence 666665554443
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.62 E-value=1.7e-08 Score=88.82 Aligned_cols=127 Identities=14% Similarity=0.096 Sum_probs=69.5
Q ss_pred ccceeEEEEeccCCC-ccccccccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCcccc
Q 006902 423 KSCIRSLFLWLAGDA-TSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST 501 (626)
Q Consensus 423 ~~~L~~L~l~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~ 501 (626)
.++|+.|++.++.-. ..+ ...+..+++|+.|++++|. +..+ ..+. .+++|++|++++|.....+|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~--~~~~---------~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKL--EGLTDEFEELEFLSTINVG-LTSI--ANLP---------KLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGGCSEEECTTCBCBTTBC--CSCCTTCTTCCEEECTTSC-CCCC--TTCC---------CCTTCCEEECCSSCCCSCTH
T ss_pred CccCeEEEccCCcCChhHH--HHHHhhcCCCcEEECcCCC-CCCc--hhhh---------cCCCCCEEECCCCcccchHH
Confidence 456777777766433 122 1234566677777777653 3322 2232 56777777777764333355
Q ss_pred c-cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccC----CCCCCCCccEEEec
Q 006902 502 F-LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYW----KPLPFTHLKEMEVS 575 (626)
Q Consensus 502 ~-l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~----~~~~lp~L~~L~i~ 575 (626)
. ++.+++|+.|++++|. +..++.. ..+..+++|++|+++++ .+..++. ....+|+|++|+++
T Consensus 82 ~~~~~l~~L~~L~ls~N~-i~~~~~~----------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNK-IKDLSTI----------EPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEEECTTSC-CCSHHHH----------GGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHhhhCCCCCEEECCCCc-CCChHHH----------HHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 3 4457777777777663 4433210 03455677777777765 4444443 24456666666654
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.61 E-value=2.2e-07 Score=87.67 Aligned_cols=129 Identities=12% Similarity=0.052 Sum_probs=81.5
Q ss_pred ceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCCCCccccc--
Q 006902 425 CIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDSTF-- 502 (626)
Q Consensus 425 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-- 502 (626)
.++.|++.++.-.... ....+..+++|+.|+++++. ++.+.+..+. .+++|++|+|+++ .+..+++
T Consensus 33 ~~~~L~L~~N~l~~~~-~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~---------~l~~L~~L~Ls~N-~l~~~~~~~ 100 (220)
T 2v70_A 33 YTAELRLNNNEFTVLE-ATGIFKKLPQLRKINFSNNK-ITDIEEGAFE---------GASGVNEILLTSN-RLENVQHKM 100 (220)
T ss_dssp TCSEEECCSSCCCEEC-CCCCGGGCTTCCEEECCSSC-CCEECTTTTT---------TCTTCCEEECCSS-CCCCCCGGG
T ss_pred CCCEEEcCCCcCCccC-chhhhccCCCCCEEECCCCc-CCEECHHHhC---------CCCCCCEEECCCC-ccCccCHhH
Confidence 3455666555432111 11235677788888887654 4444443444 6788888888886 4455553
Q ss_pred cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccc-cCCCCCCCCccEEEecCCC
Q 006902 503 LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSI-YWKPLPFTHLKEMEVSGCN 578 (626)
Q Consensus 503 l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i-~~~~~~lp~L~~L~i~~C~ 578 (626)
+..+++|+.|+|+++ .+..++.. .+..+++|++|+++++ .+..+ +.....+++|++|++.+++
T Consensus 101 ~~~l~~L~~L~Ls~N-~l~~~~~~-----------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 101 FKGLESLKTLMLRSN-RITCVGND-----------SFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GTTCSSCCEEECTTS-CCCCBCTT-----------SSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hcCCcCCCEEECCCC-cCCeECHh-----------HcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 778888888888877 34444332 4566788888888874 55555 4456678888888887753
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.59 E-value=6.9e-09 Score=115.93 Aligned_cols=105 Identities=22% Similarity=0.100 Sum_probs=78.7
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
.|++|+|++|.+..+|..+..|.+|++|+|++| .+..+|.+ |++|++|++|++++|.+.. .+
T Consensus 225 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~Ls~N~l~~----------------lp 286 (727)
T 4b8c_D 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAE-IKNLSNLRVLDLSHNRLTS----------------LP 286 (727)
T ss_dssp CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGG-GGGGTTCCEEECTTSCCSS----------------CC
T ss_pred CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChh-hhCCCCCCEEeCcCCcCCc----------------cC
Confidence 688899999998899988889999999999998 58889987 8899999999999988652 33
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCC
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDA 437 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 437 (626)
..+++|++|+.|.+..+... .++.....+++|+.|+|.++.-.
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~---~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVT---TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCC---CCCSSTTSCTTCCCEECTTSCCC
T ss_pred hhhcCCCCCCEEECCCCCCC---ccChhhhcCCCccEEeCCCCccC
Confidence 45777888888887755443 22333344566777777666543
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.58 E-value=3.2e-07 Score=94.59 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=87.5
Q ss_pred CcccchHHHHHHHHHHHhc----CCCeEEEEEcCCCchHHHHHHHHHHHHhhcc---CCCCeEEEEEecCccCHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTRINNKFLENQ---NNFDCVIWVVVSKELRLEKIQED 230 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~s~~~~~~~l~~~ 230 (626)
..++||+++++.+.+++.. .....+.|+|++|+||||+|+.+++...... ..-...+|+.+....+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6789999999999999853 4567899999999999999999998772110 11224678888888889999999
Q ss_pred HHHHhCCCCCccCCcCHHHHHHHHHHHhC--CCcEEEEEeCCCCc
Q 006902 231 IGKKIGLFDDSWKNKSFEEKAVDILRRLG--EKRFVLLLDDIWER 273 (626)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~llvlDdv~~~ 273 (626)
++..++.... ............+...+. +++.+|++||++..
T Consensus 99 l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l 142 (387)
T 2v1u_A 99 IAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFL 142 (387)
T ss_dssp HHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHH
T ss_pred HHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhh
Confidence 9999976432 133445666667777773 56889999999764
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.54 E-value=3.9e-08 Score=89.31 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=46.0
Q ss_pred cccccccccccccccchHHhhhc-ccchhcccCCCCccccchhhhcCCCcccEEEccCCCCC
Q 006902 312 SLELLDISHTYIQELPEELKLLV-NLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~-~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 372 (626)
+|++|++++|.+..+|. +..+. +|++|++++| .+..++ . +.++++|++|++.+|.+.
T Consensus 20 ~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~-~-l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKLD-G-FPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp SCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEEC-C-CCCCSSCCEEECCSSCCC
T ss_pred CceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCccc-c-cccCCCCCEEECCCCccc
Confidence 68889999998888875 55554 8999999998 578874 3 888999999999988765
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.52 E-value=7.3e-08 Score=88.88 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=34.3
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCC
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 372 (626)
.+++|+|++|.+..+|..+..+.+|++|++++| .+..+|.+.+.+|++|++|++++|.+.
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccC
Confidence 455556666655555555555666666666655 355555444555666666666655543
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.52 E-value=9.3e-08 Score=88.17 Aligned_cols=125 Identities=18% Similarity=0.266 Sum_probs=87.6
Q ss_pred cccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHH
Q 006902 314 ELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQE 393 (626)
Q Consensus 314 r~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (626)
++++++++.+..+|..+. .+|++|++++| .+..+|.. +.++++|++|++++|.+..+. +..
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~---------------~~~ 73 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKE-LSNYKHLTLIDLSNNRISTLS---------------NQS 73 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGG-GGGCTTCCEEECCSSCCCCCC---------------TTT
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHH-hhcccCCCEEECCCCcCCEeC---------------HhH
Confidence 468899999999997764 58999999999 68999976 999999999999999875421 223
Q ss_pred hhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccc
Q 006902 394 LLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEI 473 (626)
Q Consensus 394 l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~ 473 (626)
+.+|++|+.|+++.+... .+ ....+..+++|+.|+++++. +..+.+..+.
T Consensus 74 f~~l~~L~~L~Ls~N~l~---------------------------~i-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~- 123 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLR---------------------------CI-PPRTFDGLKSLRLLSLHGND-ISVVPEGAFN- 123 (193)
T ss_dssp TTTCTTCCEEECCSSCCC---------------------------BC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTT-
T ss_pred ccCCCCCCEEECCCCccC---------------------------Ee-CHHHhCCCCCCCEEECCCCC-CCeeChhhhh-
Confidence 566666666655433211 11 11246677788888888654 3333333343
Q ss_pred cccccCccccCccCEEEEeCCC
Q 006902 474 VRKRREPFVFRSLHHVTIYSCT 495 (626)
Q Consensus 474 ~~~~~~~~~l~~L~~L~L~~c~ 495 (626)
.+++|+.|+|.++.
T Consensus 124 --------~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 124 --------DLSALSHLAIGANP 137 (193)
T ss_dssp --------TCTTCCEEECCSSC
T ss_pred --------cCccccEEEeCCCC
Confidence 67888888888764
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=8.5e-08 Score=96.65 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=75.4
Q ss_pred cCccCEEEEeCCCCCccccccc-cCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccccC
Q 006902 483 FRSLHHVTIYSCTKLKDSTFLV-FAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSIYW 561 (626)
Q Consensus 483 l~~L~~L~L~~c~~l~~l~~l~-~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i~~ 561 (626)
..++..+.+.+.....+...+. .+++|+.|+|.++ .+..++.. .+..+++|++|.|.+ +++.|+.
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~-----------aF~~~~~L~~l~l~~--ni~~I~~ 266 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDF-----------TFAQKKYLLKIKLPH--NLKTIGQ 266 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTT-----------TTTTCTTCCEEECCT--TCCEECT
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHh-----------hhhCCCCCCEEECCc--ccceehH
Confidence 5677778777743222222222 4899999999976 47777764 457789999999987 3888776
Q ss_pred C-CCCCCCcc-EEEecCCCCCCCCCCCCCcCcCcceEEecc
Q 006902 562 K-PLPFTHLK-EMEVSGCNQLEKHPLDSNSAKERKVVIRGD 600 (626)
Q Consensus 562 ~-~~~lp~L~-~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~ 600 (626)
. +..+++|+ .|.+.+ +++.++.+....+..|+.+...
T Consensus 267 ~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 267 RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC
T ss_pred HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC
Confidence 4 56788999 999988 8888888777777888888753
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.51 E-value=8.3e-09 Score=115.27 Aligned_cols=128 Identities=18% Similarity=0.089 Sum_probs=84.7
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
.+..++++.+.+...|..+..+.+|+.|+|++| .+..+|.+ +.+|++|++|++++|.+. ..+
T Consensus 202 ~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~-~~~l~~L~~L~Ls~N~l~----------------~lp 263 (727)
T 4b8c_D 202 SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISAN-IFKYDFLTRLYLNGNSLT----------------ELP 263 (727)
T ss_dssp --------------------CCCCCCEEECTTS-CCSCCCGG-GGGCCSCSCCBCTTSCCS----------------CCC
T ss_pred cccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChh-hcCCCCCCEEEeeCCcCc----------------ccC
Confidence 444455555666667888999999999999999 58899998 889999999999999865 344
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFEL 463 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 463 (626)
..+++|++|+.|+++.+... .++.....+++|+.|+|.++.-. .++ ..+..+++|+.|+|+++...
T Consensus 264 ~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~L~~N~l~-~lp--~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 264 AEIKNLSNLRVLDLSHNRLT---SLPAELGSCFQLKYFYFFDNMVT-TLP--WEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GGGGGGTTCCEEECTTSCCS---SCCSSGGGGTTCSEEECCSSCCC-CCC--SSTTSCTTCCCEECTTSCCC
T ss_pred hhhhCCCCCCEEeCcCCcCC---ccChhhcCCCCCCEEECCCCCCC-ccC--hhhhcCCCccEEeCCCCccC
Confidence 56889999999998876654 33444555788999999887543 331 24778888999999876543
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.50 E-value=7.7e-08 Score=87.29 Aligned_cols=83 Identities=12% Similarity=0.183 Sum_probs=38.0
Q ss_pred ccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCccccccc
Q 006902 482 VFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKSI 559 (626)
Q Consensus 482 ~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~i 559 (626)
.+++|++|++++| .+..+|+ ++.+++|+.|+|++| .+..++... .+..+++|++|++++++ +..+
T Consensus 62 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~----------~l~~l~~L~~L~l~~N~-i~~~ 128 (176)
T 1a9n_A 62 LLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLD----------PLASLKSLTYLCILRNP-VTNK 128 (176)
T ss_dssp CCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGG----------GGGGCTTCCEEECCSSG-GGGS
T ss_pred cCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhH----------hhhcCCCCCEEEecCCC-CCCc
Confidence 4555555555554 3334442 355555555555555 233332200 23345555555555532 3333
Q ss_pred cCC----CCCCCCccEEEecCC
Q 006902 560 YWK----PLPFTHLKEMEVSGC 577 (626)
Q Consensus 560 ~~~----~~~lp~L~~L~i~~C 577 (626)
+.. ...+|+|+.|++.++
T Consensus 129 ~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 129 KHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTHHHHHHHHCTTCSEETTEEC
T ss_pred HhHHHHHHHHCCccceeCCCcC
Confidence 321 334555555555443
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.48 E-value=7.3e-08 Score=88.83 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=90.6
Q ss_pred ccccccccccccccchHHhhhcccchhcccCCCCccccchh-hhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 313 LELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQ-LISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 313 Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~-~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
-+++++++++++++|..+.. +|++|++++| .+..+|.. .+.++++|++|++++|.+.+ ..+
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~ 71 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTG---------------IEP 71 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCC---------------BCT
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCC---------------cCH
Confidence 36789999999999987755 8999999999 68888763 47899999999999998753 223
Q ss_pred HHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccc
Q 006902 392 QELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYT 471 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 471 (626)
..+.++++|+.|+++.+.. . .+ ....+..+++|+.|+++++. +..+.+..+
T Consensus 72 ~~~~~l~~L~~L~Ls~N~l--------------------------~-~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 122 (192)
T 1w8a_A 72 NAFEGASHIQELQLGENKI--------------------------K-EI-SNKMFLGLHQLKTLNLYDNQ-ISCVMPGSF 122 (192)
T ss_dssp TTTTTCTTCCEEECCSCCC--------------------------C-EE-CSSSSTTCTTCCEEECCSSC-CCEECTTSS
T ss_pred hHcCCcccCCEEECCCCcC--------------------------C-cc-CHHHhcCCCCCCEEECCCCc-CCeeCHHHh
Confidence 3466677776666543321 1 11 11246677888888888754 444445555
Q ss_pred cccccccCccccCccCEEEEeCCCCC
Q 006902 472 EIVRKRREPFVFRSLHHVTIYSCTKL 497 (626)
Q Consensus 472 ~~~~~~~~~~~l~~L~~L~L~~c~~l 497 (626)
. .+++|++|+++++...
T Consensus 123 ~---------~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 123 E---------HLNSLTSLNLASNPFN 139 (192)
T ss_dssp T---------TCTTCCEEECTTCCBC
T ss_pred h---------cCCCCCEEEeCCCCcc
Confidence 4 6889999999887543
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.44 E-value=2e-07 Score=84.55 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=44.1
Q ss_pred ccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCC
Q 006902 313 LELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 313 Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~ 372 (626)
.+.++++++++..+|..+. .+|++|++++| .+..+|...+.++++|++|++.+|.+.
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 65 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQ 65 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcce
Confidence 4567788888888886554 58888888888 578888765688888888888888754
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.43 E-value=2.3e-07 Score=87.50 Aligned_cols=123 Identities=12% Similarity=0.183 Sum_probs=75.6
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCC-eEEEEEecCccCHHHHHHHHHHHhC
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFD-CVIWVVVSKELRLEKIQEDIGKKIG 236 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (626)
..++|+++.++.+.+++.......+.|+|.+|+|||++|+.+++... . ..+. ..+.+..+.......+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-G-ENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-G-GGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-c-cccccceEEeccccccChHHHHHHHHHHhc
Confidence 46899999999999999887665699999999999999999998762 1 1221 2344444443333333222222111
Q ss_pred CCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cccccccCCCCCCCCCCcEEEEecCCh
Q 006902 237 LFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWER--VDLTEVGVPLPSPQNTTSKVVFTTRFI 300 (626)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtr~~ 300 (626)
... .-.+++.++|+||++.. .....+...+. ....+.++|+||+..
T Consensus 95 ~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 95 TAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYV 142 (226)
T ss_dssp SCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCG
T ss_pred ccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHH-hcCCCCeEEEEeCCh
Confidence 100 01257889999999764 22333332232 233467888888753
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.36 E-value=2e-07 Score=85.80 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=63.5
Q ss_pred cccccccccccccccchH--HhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccc
Q 006902 312 SLELLDISHTYIQELPEE--LKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEV 389 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~--i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 389 (626)
.+++|++++|.+..+|.. ++.+.+|++|++++| .+..++.+.+.++++|++|++++|.+.++.
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------- 94 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEIS-------------- 94 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEEC--------------
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCccC--------------
Confidence 689999999999999864 899999999999999 588875444999999999999999875421
Q ss_pred hhHHhhccCCCceEEEEEe
Q 006902 390 LIQELLGLKYLEVLELTLG 408 (626)
Q Consensus 390 ~~~~l~~L~~L~~L~i~~~ 408 (626)
+..+..+++|+.|++..+
T Consensus 95 -~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 95 -NKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp -SSSSTTCTTCCEEECCSS
T ss_pred -HHHhcCCCCCCEEECCCC
Confidence 122556666666665533
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.34 E-value=2e-08 Score=93.17 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=43.8
Q ss_pred HhhhcccchhcccCCC------CccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCceE
Q 006902 330 LKLLVNLKCLNLRGTG------QLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLEVL 403 (626)
Q Consensus 330 i~~L~~L~~L~l~~~~------~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 403 (626)
+.....+..++++.+. .++.+|.. +.++++|++|++.+|.+.. .+ .+.++++|+.|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~----------------l~-~~~~l~~L~~L 75 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEK----------------IS-SLSGMENLRIL 75 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESC----------------CC-CHHHHTTCCEE
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcc----------------cc-ccccCCCCCEE
Confidence 4455556666665542 24455556 8999999999999987653 22 57788888888
Q ss_pred EEEEechh
Q 006902 404 ELTLGSYH 411 (626)
Q Consensus 404 ~i~~~~~~ 411 (626)
++..+...
T Consensus 76 ~l~~n~l~ 83 (198)
T 1ds9_A 76 SLGRNLIK 83 (198)
T ss_dssp EEEEEEEC
T ss_pred ECCCCCcc
Confidence 88766543
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.34 E-value=3.2e-07 Score=82.91 Aligned_cols=82 Identities=24% Similarity=0.273 Sum_probs=63.9
Q ss_pred ccccccccccccccc-chHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
+|++|+|++|.+..+ |..++.+.+|++|+|++| .+..+|.+++.++++|++|++.+|.+..++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~--------------- 97 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIP--------------- 97 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccceeC---------------
Confidence 688899999988887 567888999999999988 688888875678899999999988765321
Q ss_pred hHHhhccCCCceEEEEEec
Q 006902 391 IQELLGLKYLEVLELTLGS 409 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~ 409 (626)
...+..+++|+.|++..+.
T Consensus 98 ~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTTTCTTCSEEECCSSC
T ss_pred HHHhccccCCCEEEeCCCC
Confidence 1226778888888877553
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.33 E-value=4.7e-06 Score=85.99 Aligned_cols=240 Identities=11% Similarity=0.074 Sum_probs=143.9
Q ss_pred cccccccccccccccch-HHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELPE-ELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
.|+.+.|..+ ++.++. ++.+ .+|+.+.+.. .++.|+.+.+.++.+|+.+++..+....++.. .
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~------------a 199 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS------------T 199 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTT------------T
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechh------------h
Confidence 4566666543 555553 3444 3577777775 36777777678888888888877665432111 1
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
+ ...+|+.+.+.. +...+.. .....+.+|+.+.+... ...+ ...++.. .+|+.+.+. ..++.+....
T Consensus 200 ---F-~~~~L~~l~lp~-~l~~I~~--~aF~~~~~L~~l~l~~~--l~~I-~~~aF~~-~~L~~i~lp--~~i~~I~~~a 266 (401)
T 4fdw_A 200 ---F-VYAGIEEVLLPV-TLKEIGS--QAFLKTSQLKTIEIPEN--VSTI-GQEAFRE-SGITTVKLP--NGVTNIASRA 266 (401)
T ss_dssp ---T-TTCCCSEEECCT-TCCEECT--TTTTTCTTCCCEECCTT--CCEE-CTTTTTT-CCCSEEEEE--TTCCEECTTT
T ss_pred ---E-eecccCEEEeCC-chheehh--hHhhCCCCCCEEecCCC--ccCc-ccccccc-CCccEEEeC--CCccEEChhH
Confidence 1 135666655431 1111000 01122456777777542 2222 2234555 678888885 3455554444
Q ss_pred ccccccccCccccCccCEEEEeCCCCC----cccc--ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCc
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKL----KDST--FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFEN 544 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l----~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~ 544 (626)
+. .+++|+.+.+.++... ..++ .+.++++|+.+.|.+ .++.++.. .+.++++
T Consensus 267 F~---------~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~-----------aF~~c~~ 324 (401)
T 4fdw_A 267 FY---------YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQG-----------LLGGNRK 324 (401)
T ss_dssp TT---------TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTT-----------TTTTCCS
T ss_pred hh---------CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhh-----------hhcCCCC
Confidence 44 7889999999875321 1344 377889999999874 46666553 4567889
Q ss_pred cceeecCCccccccccCC-CCCCCCccEEEecCCCCCCCCCCCCCcCc-CcceEEecccccccc
Q 006902 545 LQMLHLSYLPILKSIYWK-PLPFTHLKEMEVSGCNQLEKHPLDSNSAK-ERKVVIRGDTQWWNR 606 (626)
Q Consensus 545 L~~L~l~~~~~l~~i~~~-~~~lp~L~~L~i~~C~~L~~lP~~~~~~l-~~l~~~~~~~~~~~~ 606 (626)
|+.+.|.. +++.+... +..+ +|++|.+.+. .+..++.+....+ ..+..++.|....+.
T Consensus 325 L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 325 VTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp CCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred ccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHHHH
Confidence 99999954 57776644 4556 8999999885 6666766655544 356666666655444
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.31 E-value=4.2e-07 Score=81.86 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=59.1
Q ss_pred ccccccccccccccc-chHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQEL-PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~L-P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
.|++|+|++|.+..+ |..++.+.+|++|+|++| .+..+|.+.+.++++|++|++.+|.+.+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~--------------- 94 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIP--------------- 94 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCccCEeC---------------
Confidence 677888888888877 556788888888888888 577888775678888888888888765321
Q ss_pred hHHhhccCCCceEEEEEe
Q 006902 391 IQELLGLKYLEVLELTLG 408 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~ 408 (626)
+..+..+++|+.|++..+
T Consensus 95 ~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 95 RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEEeCCC
Confidence 123667777777777654
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.30 E-value=4.1e-07 Score=82.50 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=64.3
Q ss_pred cccccccccccccccchH-HhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELPEE-LKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
+|++|+++++.+..+|.. ++.+.+|++|++++| .+..+|...+.++++|++|++.+|.+.+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--------------- 92 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLP--------------- 92 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccC---------------
Confidence 789999999999988864 689999999999999 689999876789999999999999875421
Q ss_pred hHHhhccCCCceEEEEEe
Q 006902 391 IQELLGLKYLEVLELTLG 408 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~ 408 (626)
+..+..+++|+.|++..+
T Consensus 93 ~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 93 NGVFDKLTQLKELALDTN 110 (177)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred HHHhhCCcccCEEECcCC
Confidence 112456666766665543
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.27 E-value=1.9e-06 Score=82.28 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=40.8
Q ss_pred CcccchHHHHHHHHHHHhcCC-CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++||+..++.+..++.... ...+.|+|++|+||||+|+.+++..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999998754 4588999999999999999999877
No 154
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.27 E-value=6.8e-06 Score=80.95 Aligned_cols=113 Identities=8% Similarity=0.086 Sum_probs=78.1
Q ss_pred cccchHHHHHHHHHHHhc----CCCeEEEEEcCCCchHHHHHHHHHHHHhhccC--CC-C-eEEEEEecCccCHHHHHHH
Q 006902 159 TIVGLQSQLEQVWRCLAE----ESAGIIGLYGMGGVGKTTLLTRINNKFLENQN--NF-D-CVIWVVVSKELRLEKIQED 230 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~F-~-~~~wv~~s~~~~~~~l~~~ 230 (626)
.+.||+++++.|...|.. +....+-|+|++|+|||++|+.|.+...+... .. . ..+.+.+....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 378999999999888764 57788999999999999999999998832111 11 1 3567777777788999999
Q ss_pred HHHHhCCCCCccCCcCHHHHHHHHHHHh---CCCcEEEEEeCCCCc
Q 006902 231 IGKKIGLFDDSWKNKSFEEKAVDILRRL---GEKRFVLLLDDIWER 273 (626)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~llvlDdv~~~ 273 (626)
|++++...... ..... .....+...+ .++++++++|++...
T Consensus 101 I~~~L~g~~~~-~~~~~-~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 101 IWFAISKENLC-GDISL-EALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHSCCC---CCCCH-HHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHhcCCCCC-chHHH-HHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 99999644211 11222 3333344443 467899999999664
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=9.2e-07 Score=78.79 Aligned_cols=37 Identities=32% Similarity=0.355 Sum_probs=17.0
Q ss_pred ccCEEEEeCCCCCcc--ccccccCCCccEEEEeccCccc
Q 006902 485 SLHHVTIYSCTKLKD--STFLVFAPNLKSLTLFDCGAME 521 (626)
Q Consensus 485 ~L~~L~L~~c~~l~~--l~~l~~L~~L~~L~L~~~~~l~ 521 (626)
+|++|+|++|..+++ +..+..+++|++|+|++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 444555555444444 2234444455555555444444
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=5.8e-07 Score=80.12 Aligned_cols=87 Identities=9% Similarity=0.064 Sum_probs=56.4
Q ss_pred CccCEEEEeCCCCCcc--ccccccCCCccEEEEeccCccccccccCccccccccCCCCCc----CCccceeecCCccccc
Q 006902 484 RSLHHVTIYSCTKLKD--STFLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISP----FENLQMLHLSYLPILK 557 (626)
Q Consensus 484 ~~L~~L~L~~c~~l~~--l~~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~----fp~L~~L~l~~~~~l~ 557 (626)
.+|++|++++|. +++ +..+..+++|+.|+|++|..+++..-. .+.. .++|++|+|++|++++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-----------~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-----------RLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-----------HHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-----------HHHhcccccCCCCEEEcCCCCcCC
Confidence 367778888775 444 334677788888888888766654321 1122 3578888888887776
Q ss_pred cccC-CCCCCCCccEEEecCCCCCCC
Q 006902 558 SIYW-KPLPFTHLKEMEVSGCNQLEK 582 (626)
Q Consensus 558 ~i~~-~~~~lp~L~~L~i~~C~~L~~ 582 (626)
+-.. ....+|+|++|++++||+++.
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 5211 133578888888888887775
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.16 E-value=9.1e-07 Score=79.91 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=60.4
Q ss_pred ccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhH
Q 006902 313 LELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQ 392 (626)
Q Consensus 313 Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (626)
-+.++++++.+..+|..+. .+|++|++++| .+..+|...+.++++|++|++.+|.+.+++. .
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---------------~ 75 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPT---------------G 75 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------T
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccCh---------------h
Confidence 3578999999999998775 89999999999 6888866558999999999999998764211 1
Q ss_pred HhhccCCCceEEEEEe
Q 006902 393 ELLGLKYLEVLELTLG 408 (626)
Q Consensus 393 ~l~~L~~L~~L~i~~~ 408 (626)
.+.++++|+.|++..+
T Consensus 76 ~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HhCCcchhhEEECCCC
Confidence 2466777777766544
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.16 E-value=9.1e-07 Score=79.59 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=61.1
Q ss_pred cccccccccccccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchh
Q 006902 312 SLELLDISHTYIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLI 391 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (626)
..+.++++++.++++|..+. .+|++|++++| .+..+|.+.+.++++|++|++.+|.+..++ +
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---------------~ 71 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLP---------------A 71 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCC---------------T
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccC---------------h
Confidence 35678999999999998774 78999999999 688886655899999999999999876421 1
Q ss_pred HHhhccCCCceEEEEEe
Q 006902 392 QELLGLKYLEVLELTLG 408 (626)
Q Consensus 392 ~~l~~L~~L~~L~i~~~ 408 (626)
..+..+++|+.|++..+
T Consensus 72 ~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 72 GVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred hhccCCCCCCEEECCCC
Confidence 12466777777766544
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.15 E-value=5.7e-06 Score=75.70 Aligned_cols=46 Identities=20% Similarity=0.394 Sum_probs=42.0
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++||++.++.+.+++.......+.|+|.+|+|||++|+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988777788999999999999999999887
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=1.7e-06 Score=86.73 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=73.3
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCC-eEEEEEecCccCHHHHHHHHHHHhC
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFD-CVIWVVVSKELRLEKIQEDIGKKIG 236 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (626)
..++|++..++.+.+++..+....+.|+|++|+||||+|+.+++... ...+. ..+++..+.......+ ++++..+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 46899999999999999887655589999999999999999998762 11111 2344443332222222 11221111
Q ss_pred CCCCccCCcCHHHHHHHHHHHh-CCCcEEEEEeCCCCc--cccccccCCCCCCCCCCcEEEEecCC
Q 006902 237 LFDDSWKNKSFEEKAVDILRRL-GEKRFVLLLDDIWER--VDLTEVGVPLPSPQNTTSKVVFTTRF 299 (626)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l-~~k~~llvlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtr~ 299 (626)
... ..+ .+++.++|+||++.. ..+..+...+. ....++++|++|+.
T Consensus 98 ~~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 98 QKK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTME-LYSNSTRFAFACNQ 146 (323)
T ss_dssp HBC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHH-HTTTTEEEEEEESC
T ss_pred hcc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHh-ccCCCceEEEEeCC
Confidence 000 001 346889999999763 23333433332 23346788887764
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.11 E-value=1.2e-05 Score=82.95 Aligned_cols=196 Identities=15% Similarity=0.102 Sum_probs=128.7
Q ss_pred cccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
.|+.+.|.. .++.++ .++..+.+|+.+++..+ .+..||.+.+. ..+|+.+.+..+ ...+ .
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~-l~~I---------------~ 218 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFV-YAGIEEVLLPVT-LKEI---------------G 218 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTT-TCCCSEEECCTT-CCEE---------------C
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEe-ecccCEEEeCCc-hhee---------------h
Confidence 577777765 566665 56888999999999988 68999998554 689999998854 2211 1
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCc----ceE
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFEL----EEL 466 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l----~~l 466 (626)
...+.++++|+.+.+... .. .+....-...+|+.+.+... ...+ ....+..+++|+.+.+.+.... ..+
T Consensus 219 ~~aF~~~~~L~~l~l~~~-l~---~I~~~aF~~~~L~~i~lp~~--i~~I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 219 SQAFLKTSQLKTIEIPEN-VS---TIGQEAFRESGITTVKLPNG--VTNI-ASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp TTTTTTCTTCCCEECCTT-CC---EECTTTTTTCCCSEEEEETT--CCEE-CTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred hhHhhCCCCCCEEecCCC-cc---CccccccccCCccEEEeCCC--ccEE-ChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 123566777877776421 11 11111111257888888542 2233 3347888999999999764321 223
Q ss_pred eeccccccccccCccccCccCEEEEeCCCCCcccc--ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCc
Q 006902 467 KIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFEN 544 (626)
Q Consensus 467 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~ 544 (626)
....+. .+++|+.+.|.+ .++.++ .+.++++|+.|.|.. .+..+... .+..+ +
T Consensus 292 ~~~aF~---------~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~-----------aF~~~-~ 346 (401)
T 4fdw_A 292 HPYCLE---------GCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFS-----------AFNNT-G 346 (401)
T ss_dssp CTTTTT---------TCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTT-----------SSSSS-C
T ss_pred CHHHhh---------CCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHH-----------hCCCC-C
Confidence 333343 789999999985 577776 377899999999965 36666553 44567 8
Q ss_pred cceeecCCccccccc
Q 006902 545 LQMLHLSYLPILKSI 559 (626)
Q Consensus 545 L~~L~l~~~~~l~~i 559 (626)
|+.+.+.+. .+..+
T Consensus 347 L~~l~l~~n-~~~~l 360 (401)
T 4fdw_A 347 IKEVKVEGT-TPPQV 360 (401)
T ss_dssp CCEEEECCS-SCCBC
T ss_pred CCEEEEcCC-CCccc
Confidence 999999874 34443
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=1.8e-06 Score=87.55 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=75.2
Q ss_pred ccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccccccccCccccCccCEEEEeCCC-------
Q 006902 423 KSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCT------- 495 (626)
Q Consensus 423 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~------- 495 (626)
+++|+.|.|.++.+. .+..+ .+++|++|.|..|..... ....+. ...+|+|++|+|+.+.
T Consensus 171 ~P~L~~L~L~g~~~l----~l~~~-~~~~L~~L~L~~~~l~~~-~l~~l~-------~~~lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL----SIGKK-PRPNLKSLEIISGGLPDS-VVEDIL-------GSDLPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp CTTCCEEEEECCBTC----BCCSC-BCTTCSEEEEECSBCCHH-HHHHHH-------HSBCTTCCEEEEECBCGGGTCCS
T ss_pred CCCCcEEEEeCCCCc----eeccc-cCCCCcEEEEecCCCChH-HHHHHH-------HccCCCCcEEEEeccccccccch
Confidence 456777777665322 11223 267888888875542211 111111 0157888888886321
Q ss_pred CCccccc-c--ccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcccccc-----ccCCCCCCC
Q 006902 496 KLKDSTF-L--VFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKS-----IYWKPLPFT 567 (626)
Q Consensus 496 ~l~~l~~-l--~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~-----i~~~~~~lp 567 (626)
....+.. + +.+|+|+.|.|.+|......... + .....+|+|++|+|+. +.+.. +......++
T Consensus 238 ~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~--------l-a~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~ 307 (362)
T 2ra8_A 238 DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM--------F-LESDILPQLETMDISA-GVLTDEGARLLLDHVDKIK 307 (362)
T ss_dssp CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH--------H-HHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHT
T ss_pred hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH--------H-HhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCC
Confidence 1222222 2 35889999999887543322110 0 0124588999999975 45554 333335678
Q ss_pred CccEEEecCCC
Q 006902 568 HLKEMEVSGCN 578 (626)
Q Consensus 568 ~L~~L~i~~C~ 578 (626)
+|+.|++++|.
T Consensus 308 ~L~~L~L~~n~ 318 (362)
T 2ra8_A 308 HLKFINMKYNY 318 (362)
T ss_dssp TCSEEECCSBB
T ss_pred cceEEECCCCc
Confidence 99999998873
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=6.1e-06 Score=83.61 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=26.1
Q ss_pred ccchHHhhhcccchhcccCCCC---------ccccchhhhcCCCcccEEEccCC
Q 006902 325 ELPEELKLLVNLKCLNLRGTGQ---------LNKIPRQLISKFSRLRVLRMLGT 369 (626)
Q Consensus 325 ~LP~~i~~L~~L~~L~l~~~~~---------l~~lP~~~i~~L~~L~~L~l~~~ 369 (626)
.|+.++.++.+|+.|.+..... ...++. ++..+++|+.|+++++
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECC
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCC
Confidence 3455566777777777654310 112443 2567778888888766
No 164
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.91 E-value=8.4e-06 Score=81.73 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=41.6
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|+++.++.+.+++..+....+.++|++|+||||+|+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999999999988776669999999999999999999876
No 165
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.90 E-value=1.4e-05 Score=72.65 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=41.9
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|++.+++.+.+++.......+.|+|.+|+|||++|+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988777778999999999999999999876
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.76 E-value=9.1e-06 Score=82.29 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=26.6
Q ss_pred ccccc-cccccchHHhhhcccchhcccC-CCCccccchhhhcCCCcccEEEccCCCC
Q 006902 317 DISHT-YIQELPEELKLLVNLKCLNLRG-TGQLNKIPRQLISKFSRLRVLRMLGTGP 371 (626)
Q Consensus 317 ~L~~~-~i~~LP~~i~~L~~L~~L~l~~-~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 371 (626)
+++++ ++..+|. ++.+.+|++|+|++ | .+..+|...+.+|++|++|++++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l 68 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGL 68 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCcc
Confidence 44444 4555555 55555555555554 3 35555543345555555555555544
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.70 E-value=8.7e-06 Score=83.08 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=17.7
Q ss_pred cCccCEEEEeCCCCCccc-----c-ccccCCCccEEEEecc
Q 006902 483 FRSLHHVTIYSCTKLKDS-----T-FLVFAPNLKSLTLFDC 517 (626)
Q Consensus 483 l~~L~~L~L~~c~~l~~l-----~-~l~~L~~L~~L~L~~~ 517 (626)
.++|++|+|++|. +++. . .+...++|+.|+|++|
T Consensus 210 ~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 210 NRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 4456666666652 3221 1 1334566666666665
No 168
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.67 E-value=3.3e-05 Score=76.98 Aligned_cols=119 Identities=13% Similarity=0.222 Sum_probs=71.6
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCC-eEEEEEecCccCHHHHHHHHHHHhC
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFD-CVIWVVVSKELRLEKIQEDIGKKIG 236 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (626)
.+++|++..++.+.+++..+....+.++|++|+|||++|+.+.+... ...+. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~------------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGI------------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCT------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccCh------------
Confidence 45899999999999999887655589999999999999999998752 11111 1233333321110
Q ss_pred CCCCccCCcCHHHHHHHHHHH--h-CCCcEEEEEeCCCCc--cccccccCCCCCCCCCCcEEEEecCC
Q 006902 237 LFDDSWKNKSFEEKAVDILRR--L-GEKRFVLLLDDIWER--VDLTEVGVPLPSPQNTTSKVVFTTRF 299 (626)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~llvlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtr~ 299 (626)
............. + .+++.++|+||+... .....+...+. ....+.++|+||..
T Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~ 141 (319)
T 2chq_A 83 --------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNY 141 (319)
T ss_dssp --------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTS-SSSSSEEEEEEESC
T ss_pred --------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCC
Confidence 0111111111111 1 256789999999653 23344444443 33456778877764
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.53 E-value=0.00022 Score=71.91 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=61.5
Q ss_pred cccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecCCcccccc
Q 006902 481 FVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLSYLPILKS 558 (626)
Q Consensus 481 ~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~ 558 (626)
..+++|+.|+|++++.+..+++ ++.|++|+.|+|+++ .+..++.. .+..+++|++|+|++ +.+..
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-----------~~~~l~~L~~L~l~~-N~l~~ 94 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD-----------AFHFTPRLSRLNLSF-NALES 94 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT-----------GGGSCSCCCEEECCS-SCCSC
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHH-----------HhcCCcCCCEEeCCC-Cccce
Confidence 3678889999987567777764 788899999999887 56666542 346788889999887 56777
Q ss_pred ccCCCCCCCCccEEEecCC
Q 006902 559 IYWKPLPFTHLKEMEVSGC 577 (626)
Q Consensus 559 i~~~~~~lp~L~~L~i~~C 577 (626)
++........|+.|++.++
T Consensus 95 ~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 95 LSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCSTTTCSCCCCEEECCSS
T ss_pred eCHHHcccCCceEEEeeCC
Confidence 7765444334888888774
No 170
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.52 E-value=9.1e-05 Score=66.99 Aligned_cols=117 Identities=16% Similarity=0.176 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHhc---CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCC
Q 006902 163 LQSQLEQVWRCLAE---ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFD 239 (626)
Q Consensus 163 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~ 239 (626)
..+.++.+.+++.+ .....+.|+|+.|+||||||+.+++.. .....+. ++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI-YEKKGIR-GYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH-HHHSCCC-CCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH-HHHcCCe-EEEE------EHHHHHHHHHHHhcCch
Confidence 44555555555544 245789999999999999999999987 3222222 2333 34455555544332111
Q ss_pred CccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCC--ccccc--cccCCCCCCCCCCcEEEEecCC
Q 006902 240 DSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWE--RVDLT--EVGVPLPSPQNTTSKVVFTTRF 299 (626)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~--~~~~~--~l~~~~~~~~~~~s~iivTtr~ 299 (626)
.. . +...+. +.-++|+||++. ...|. .+...+......|..+|+||..
T Consensus 91 -----~~--~----~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 91 -----DT--K----FLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp -----CS--H----HHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred -----HH--H----HHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 01 1 112222 455889999973 23332 1111111011246678888863
No 171
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.49 E-value=5.4e-05 Score=77.15 Aligned_cols=170 Identities=19% Similarity=0.133 Sum_probs=93.0
Q ss_pred Ccccccccccccccccc-hHHhhh-----cccchhcccCCCCcccc-chhhhcCCCcccEEEccCCCCCcccCCCCcccc
Q 006902 311 SSLELLDISHTYIQELP-EELKLL-----VNLKCLNLRGTGQLNKI-PRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVL 383 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~LP-~~i~~L-----~~L~~L~l~~~~~l~~l-P~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 383 (626)
.+|++|+|++|.+...+ ..+..+ .+|++|+|++| .+... ...+...+.+|++|++++|.+....
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~-------- 142 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEA-------- 142 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHH--------
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHH--------
Confidence 36778888888765432 223333 57888888888 35431 1122334567888888888653200
Q ss_pred cCCccchhHHh-hccCCCceEEEEEechh--hHHHHhhccccccceeEEEEeccCCCcc-ccc-cccccccccccceeec
Q 006902 384 FGGGEVLIQEL-LGLKYLEVLELTLGSYH--ALQILLSSNKLKSCIRSLFLWLAGDATS-IVD-ATAFADLNHLNELWIY 458 (626)
Q Consensus 384 ~~~~~~~~~~l-~~L~~L~~L~i~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~-~~~l~~~~~L~~L~l~ 458 (626)
.......+ ...++|+.|+++.+... +...+.......++|+.|+|.++.-... ... ...+...++|++|+++
T Consensus 143 ---~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 143 ---CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp ---HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred ---HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 00111222 23567888887766532 3334444444466788888887753211 100 1245666788888888
Q ss_pred ccCCcceEeeccccccccccCccccCccCEEEEeCCCCCcc
Q 006902 459 RGFELEELKIDYTEIVRKRREPFVFRSLHHVTIYSCTKLKD 499 (626)
Q Consensus 459 ~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 499 (626)
+|.... .....+. ......++|++|+|++|. +++
T Consensus 220 ~N~i~~-~g~~~l~-----~~L~~~~~L~~L~Ls~N~-i~~ 253 (372)
T 3un9_A 220 YNGAGD-TAALALA-----RAAREHPSLELLHLYFNE-LSS 253 (372)
T ss_dssp SSCCCH-HHHHHHH-----HHHHHCSSCCEEECTTSS-CCH
T ss_pred CCCCCH-HHHHHHH-----HHHHhCCCCCEEeccCCC-CCH
Confidence 765322 1111111 011245789999998874 443
No 172
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.48 E-value=0.00017 Score=71.48 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=37.1
Q ss_pred cccchHHHHHHHHHHHh---------------cCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 159 TIVGLQSQLEQVWRCLA---------------EESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++|.+..++.+.+++. ......+.|+|.+|+|||++|+.+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999888887664 2344578999999999999999998877
No 173
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.41 E-value=0.00029 Score=71.85 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=40.5
Q ss_pred CcccchHHHHHHHHHHHhcCC-CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|+++.++.+.+++..+. ...+.|+|+.|+||||+|+.+.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999998764 4578899999999999999999877
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.38 E-value=0.00016 Score=70.68 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++.++.+.+.+.. ....-+.|+|++|+|||++|+.+++..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999999888753 345678999999999999999999876
No 175
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.38 E-value=0.00051 Score=63.23 Aligned_cols=52 Identities=31% Similarity=0.243 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCC----CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEe
Q 006902 164 QSQLEQVWRCLAEES----AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVV 218 (626)
Q Consensus 164 ~~~~~~l~~~L~~~~----~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 218 (626)
...++.+.+++.... ...+.|+|.+|+|||+||+.+++.. ......++|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~ 90 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL---AKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH---HTTTCCEEEEEH
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEEh
Confidence 345556666665431 2788999999999999999999987 233345666654
No 176
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.30 E-value=0.00077 Score=70.13 Aligned_cols=46 Identities=28% Similarity=0.316 Sum_probs=41.1
Q ss_pred CcccchHHHH---HHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQL---EQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.+..+ ..+...+..+....+.|+|.+|+||||+|+.+.+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999888 788888888888889999999999999999999876
No 177
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.29 E-value=0.0014 Score=63.39 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=34.9
Q ss_pred CcccchHHHHHHHHH-------HHh---cCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWR-------CLA---EESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.+..++++.. .+. ......+-|+|.+|+|||++|+.+.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 456787777666665 332 2345678899999999999999999876
No 178
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.27 E-value=0.0011 Score=63.75 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=36.6
Q ss_pred CcccchHHHHHHHHHHHhc------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+++.. ...+-+.|+|++|+|||++|+.+.+..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999888887666531 133567899999999999999999876
No 179
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.24 E-value=0.00042 Score=69.20 Aligned_cols=117 Identities=12% Similarity=0.093 Sum_probs=69.8
Q ss_pred CcccchHHHHHHHHHHHhcCCC-eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhC
Q 006902 158 PTIVGLQSQLEQVWRCLAEESA-GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIG 236 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (626)
.+++|.++.++.+.+++..+.. .++-+.|++|+|||++|+.+.+.. . ...+.++.+.. ....+ +..+....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i-~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFV-RGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHH-HTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHH-HHHHHHHH
Confidence 5689999999999999987654 577778889999999999998865 1 12444554432 22222 21111110
Q ss_pred CCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCcc---ccccccCCCCCCCCCCcEEEEecCCh
Q 006902 237 LFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWERV---DLTEVGVPLPSPQNTTSKVVFTTRFI 300 (626)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~---~~~~l~~~~~~~~~~~s~iivTtr~~ 300 (626)
... ...+++.++++||+.... ....+...+. ....+.++|+||...
T Consensus 98 ~~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le-~~~~~~~iI~~~n~~ 146 (324)
T 3u61_B 98 SAA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFME-AYSSNCSIIITANNI 146 (324)
T ss_dssp HBC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHH-HHGGGCEEEEEESSG
T ss_pred hhc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHH-hCCCCcEEEEEeCCc
Confidence 000 012367899999997653 2222322221 112356788777643
No 180
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.00029 Score=71.19 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=40.6
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|+++.++.+..++..+....+.++|+.|+||||+|+.+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999988755558999999999999999999875
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.17 E-value=0.00045 Score=68.83 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHHhc------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+.+.- ...+-+-++|.+|+|||+||+.+.+..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999999999988831 134568999999999999999999876
No 182
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.14 E-value=0.0013 Score=68.98 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=41.1
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++||+++++.+.+.|......-+-++|.+|+|||++|+.+....
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987666667899999999999999999876
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.11 E-value=0.00068 Score=70.60 Aligned_cols=121 Identities=20% Similarity=0.230 Sum_probs=66.1
Q ss_pred ccc-chH--HHHHHHHHHHhcCC-CeEEEEEcCCCchHHHHHHHHHHHHhhccCCC--CeEEEEEecCccCHHHHHHHHH
Q 006902 159 TIV-GLQ--SQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTRINNKFLENQNNF--DCVIWVVVSKELRLEKIQEDIG 232 (626)
Q Consensus 159 ~~v-Gr~--~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F--~~~~wv~~s~~~~~~~l~~~i~ 232 (626)
+|+ |.. .....+..+..... ...+.|+|.+|+||||||+.+++... ..+ ..+++++.. .+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~---~~~~~~~v~~v~~~------~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV---QNEPDLRVMYITSE------KFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH---HHCCSSCEEEEEHH------HHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEeeHH------HHHHHHH
Confidence 344 643 23444444444433 56789999999999999999999772 222 124555433 3344444
Q ss_pred HHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCccc----cccccCCCCCCCCCCcEEEEecCC
Q 006902 233 KKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWERVD----LTEVGVPLPSPQNTTSKVVFTTRF 299 (626)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~~~----~~~l~~~~~~~~~~~s~iivTtr~ 299 (626)
..+... .. ..+...+..+.-+|++||++.... .+.+...+......|..||+||..
T Consensus 177 ~~~~~~-------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 177 DSMKEG-------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHTT-------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHcc-------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 444211 11 223344443567899999965431 122222211001246678888864
No 184
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.07 E-value=0.0024 Score=62.79 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+++.. ...+.+.|+|++|+|||+||+.+.+..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4689999999888887752 345678999999999999999999876
No 185
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.06 E-value=0.0037 Score=62.05 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=37.9
Q ss_pred CcccchHHHHHHHHHHHhc------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++.++.|.+.+.- ...+-+-++|++|+|||+||+.+.+..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 5689999999988887641 134678999999999999999999865
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.00085 Score=67.82 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=39.0
Q ss_pred CcccchHHHHHHHHHHH-hcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCL-AEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++.++.+.+++ ..+....+.|+|+.|+||||+|+.+....
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999998 66554448999999999999999998854
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.05 E-value=0.0019 Score=63.40 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHHHHHhc------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+++.. .....+.|+|++|+||||+|+.+.+..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5689999999999888742 235688999999999999999999866
No 188
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.01 E-value=0.0011 Score=70.51 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=46.7
Q ss_pred CcccchHHHHHHHHHHHhc-----------------CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 006902 158 PTIVGLQSQLEQVWRCLAE-----------------ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK 220 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 220 (626)
.+++|++..++.+.+|+.. ...+.+.|+|++|+||||+|+.+.+.. .+ .++.+..+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeCCC
Confidence 5689999999999999975 134789999999999999999998865 12 244555555
Q ss_pred ccCH
Q 006902 221 ELRL 224 (626)
Q Consensus 221 ~~~~ 224 (626)
....
T Consensus 113 ~~~~ 116 (516)
T 1sxj_A 113 VRSK 116 (516)
T ss_dssp CCCH
T ss_pred cchH
Confidence 4443
No 189
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.00 E-value=0.0024 Score=63.49 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=39.1
Q ss_pred CcccchHHHHHHHHHHHhc-----CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|++..++.+..++.. .....+.|+|++|+|||++|+.+.+..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999998888763 344678899999999999999999876
No 190
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.96 E-value=0.00056 Score=65.56 Aligned_cols=59 Identities=27% Similarity=0.356 Sum_probs=38.3
Q ss_pred Cccccccccccccccc---chHHhhhcccchhcccCCCCccccchhhhcCCC--cccEEEccCCCCC
Q 006902 311 SSLELLDISHTYIQEL---PEELKLLVNLKCLNLRGTGQLNKIPRQLISKFS--RLRVLRMLGTGPF 372 (626)
Q Consensus 311 ~~Lr~L~L~~~~i~~L---P~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~--~L~~L~l~~~~~~ 372 (626)
.+|+.|+|++|.+..+ |..++.+.+|++|+|++| .+..+.. +..+. +|++|++.+|.+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCSEEECTTSTTG
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcceEEccCCcCc
Confidence 3677777777766543 356667777777777777 4666533 44444 7777777777643
No 191
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.96 E-value=0.0028 Score=60.68 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=35.7
Q ss_pred CcccchHHHHHHHHHHHh---c---------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLA---E---------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+.+. . ...+-+.|+|.+|+||||+|+.+.+..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 568999988887765542 1 123458899999999999999999876
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.93 E-value=0.0018 Score=65.46 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=39.0
Q ss_pred CcccchHHHHHHHHHHHhc------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+.+.. ...+.+.|+|.+|+|||++|+.+.+..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999888742 346778999999999999999998865
No 193
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.91 E-value=0.0022 Score=72.75 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=41.3
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++||++++..+++.|......-+.++|.+|+||||+|+.+.+..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987766667899999999999999999876
No 194
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.84 E-value=0.00068 Score=61.47 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=57.5
Q ss_pred Ccccccccccc-ccc-----ccchHHhhhcccchhcccCCCCccc-----cchhhhcCCCcccEEEccCCCCCcccCCCC
Q 006902 311 SSLELLDISHT-YIQ-----ELPEELKLLVNLKCLNLRGTGQLNK-----IPRQLISKFSRLRVLRMLGTGPFSFDEAPE 379 (626)
Q Consensus 311 ~~Lr~L~L~~~-~i~-----~LP~~i~~L~~L~~L~l~~~~~l~~-----lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 379 (626)
..|++|+|++| .+. .+...+....+|++|+|++| .+.. +... +...++|++|++.+|.+..-.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~-L~~n~~L~~L~L~~N~i~~~g---- 109 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEM-LKVNNTLKSLNVESNFISGSG---- 109 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHH-HHHCSSCCEEECCSSCCCHHH----
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHH-HHhCCCcCEEECcCCcCCHHH----
Confidence 46777777777 553 34555566667777777777 3442 3333 455566777777777653100
Q ss_pred cccccCCccchhHHhhccCCCceEEE--EEec--hhhHHHHhhccccccceeEEEEecc
Q 006902 380 DSVLFGGGEVLIQELLGLKYLEVLEL--TLGS--YHALQILLSSNKLKSCIRSLFLWLA 434 (626)
Q Consensus 380 ~~~~~~~~~~~~~~l~~L~~L~~L~i--~~~~--~~~~~~l~~~~~~~~~L~~L~l~~~ 434 (626)
-......+...+.|+.|++ ..+. ..+...+.......+.|+.|++.++
T Consensus 110 -------~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 110 -------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp -------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred -------HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 0112334455556666665 3222 2222333333333345555555544
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.80 E-value=0.0088 Score=62.26 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHHhc------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+.+.. ...+-+.++|++|+|||+||+.+.+..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999887731 234678999999999999999999865
No 196
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.79 E-value=0.0015 Score=65.59 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=39.8
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.+..++.+..++..++..-+.++|+.|+||||+|+.+.+..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999988765558999999999999999999876
No 197
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.79 E-value=0.0031 Score=63.21 Aligned_cols=46 Identities=28% Similarity=0.315 Sum_probs=39.2
Q ss_pred CcccchHHHHHHHHHHHhc-----CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|++..++.+..++.. .....+.|+|++|+|||++|+.+.+..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5689999999999988874 345568999999999999999998765
No 198
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0053 Score=63.01 Aligned_cols=46 Identities=26% Similarity=0.369 Sum_probs=38.6
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.++.++.|.+.+.- ...+-|-++|++|.|||+||+++.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4678999999888777642 245789999999999999999999987
No 199
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.74 E-value=0.0038 Score=69.94 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=41.2
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++|++++++.+.+.|......-+-++|.+|+|||++|+.+.+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987666667899999999999999999876
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.0044 Score=62.62 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.++.+++|.+.+.- ...+-|-++|++|.|||.||+++.+..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4578999999888777642 245678899999999999999999987
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.71 E-value=0.005 Score=62.97 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHHHHhc------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+++.. ....-+.|+|.+|+|||++|+.+.+..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999988832 234678999999999999999998765
No 202
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.68 E-value=0.0026 Score=60.04 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=43.3
Q ss_pred Ccccch---HHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 006902 158 PTIVGL---QSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK 220 (626)
Q Consensus 158 ~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 220 (626)
.+++|. +..++.+..+........+.|+|.+|+||||+|+.+.+.. . .....+.|+.++.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~-~--~~~~~~~~~~~~~ 90 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA-N--ELERRSFYIPLGI 90 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEEEGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEHHH
Confidence 345653 4667777777766667889999999999999999999987 2 2233466776654
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.66 E-value=0.0054 Score=60.20 Aligned_cols=116 Identities=14% Similarity=0.048 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhcc-CCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCC
Q 006902 163 LQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQ-NNFDCVIWVVVSK-ELRLEKIQEDIGKKIGLFDD 240 (626)
Q Consensus 163 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~ 240 (626)
-++.++.+.+.+..++....-++|+.|+||||+|+.+.+...... .+.+ ..++..+. ...++.+ +++.+.+....
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p- 78 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP- 78 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC-
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc-
Confidence 345567788888877777899999999999999999987641111 2334 35555442 3333332 33444433211
Q ss_pred ccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cccccccCCCCCCCCCCcEEEEecCC
Q 006902 241 SWKNKSFEEKAVDILRRLGEKRFVLLLDDIWER--VDLTEVGVPLPSPQNTTSKVVFTTRF 299 (626)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtr~ 299 (626)
..+++-++|+|++... ...+.+...+. .....+.+|++|.+
T Consensus 79 -----------------~~~~~kvviIdead~lt~~a~naLLk~LE-ep~~~t~fIl~t~~ 121 (305)
T 2gno_A 79 -----------------ELYTRKYVIVHDCERMTQQAANAFLKALE-EPPEYAVIVLNTRR 121 (305)
T ss_dssp -----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHH-SCCTTEEEEEEESC
T ss_pred -----------------ccCCceEEEeccHHHhCHHHHHHHHHHHh-CCCCCeEEEEEECC
Confidence 0245678899998653 23344433332 23346777766643
No 204
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0054 Score=62.84 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.++.++.|.+.+.- ...+-+-++|++|.|||+||+++.+..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999988887642 245678999999999999999999987
No 205
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.61 E-value=0.0089 Score=67.02 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=41.7
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++||+++++.+++.|......-+.++|.+|+|||++|+.+.+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988777778899999999999999999876
No 206
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0067 Score=62.18 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.++.+++|.+.+.- ...+-|-++|++|.|||+||+++.+..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 4678999999998876531 256788999999999999999999987
No 207
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0054 Score=62.92 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.++.+++|.+.+.- ...+-|-++|++|.|||.||+++.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4678999999998877542 246778999999999999999999987
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.58 E-value=0.0017 Score=56.09 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=35.5
Q ss_pred cccchHHHHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 159 TIVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++|++..++++.+.+.. ....-|-|+|..|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999888753 233446799999999999999998865
No 209
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.55 E-value=0.0021 Score=64.89 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHHhc------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.|.+.+.. ...+-|.++|++|+|||+||+.+.+..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999999888731 123458899999999999999999977
No 210
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.54 E-value=0.00074 Score=65.29 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=35.3
Q ss_pred CcccchHHHHHHHHHHHhc------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.+..++.+.+.+.. ...+-+.|+|.+|+|||++|+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 5688988777777666541 123347799999999999999999977
No 211
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.45 E-value=0.0025 Score=55.31 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 006902 159 TIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK 220 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 220 (626)
.++|.+... +..|..-....+.|+|..|+|||||++.+++.. .. ..+ .++++....
T Consensus 19 f~~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~-~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 19 FLGTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQA-LE-AGK-NAAYIDAAS 74 (149)
T ss_dssp CCSCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHH-HT-TTC-CEEEEETTT
T ss_pred cCcCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHH-Hh-cCC-cEEEEcHHH
Confidence 344554432 333332256789999999999999999999987 32 222 256665443
No 212
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0091 Score=60.60 Aligned_cols=46 Identities=30% Similarity=0.439 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.++.+++|.+.+.- ...+-|-++|++|.|||.||+++.+..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 4578999999888776642 245779999999999999999999987
No 213
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.42 E-value=0.0098 Score=55.19 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=54.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCC---------c-cCCcCH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDD---------S-WKNKSF 247 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~---------~-~~~~~~ 247 (626)
.-.++.|+|.+|+||||||..+.. . .. ..++|++....++...+.. +.+..+.... . ......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~---~~--~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L---SG--KKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H---HC--SEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H---cC--CcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 457999999999999999999987 3 11 3688888776556555543 3333222100 0 011122
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCc
Q 006902 248 EEKAVDILRRLGEKRFVLLLDDIWER 273 (626)
Q Consensus 248 ~~~~~~l~~~l~~k~~llvlDdv~~~ 273 (626)
.+....+...+..+.-++|+|.....
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 33444555555445778999988543
No 214
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.38 E-value=0.013 Score=59.95 Aligned_cols=39 Identities=13% Similarity=0.295 Sum_probs=23.5
Q ss_pred HHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCC
Q 006902 329 ELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGT 369 (626)
Q Consensus 329 ~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~ 369 (626)
++..+.+|+.+.+..+ +..++.+.+.++.+|+.+.+..+
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC
Confidence 4555666666666554 45566665666666666666543
No 215
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.37 E-value=0.011 Score=58.34 Aligned_cols=61 Identities=20% Similarity=0.342 Sum_probs=45.0
Q ss_pred CcccchHHHHHHHHHHHhcC---------CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 006902 158 PTIVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE 221 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 221 (626)
..++|.+..++.+...+... ....+.++|..|+|||++|+.+.+... ..-...+.+.++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTEY 86 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGGC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeecccc
Confidence 45789999999888888652 235899999999999999999999772 22223455655543
No 216
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.37 E-value=0.0099 Score=56.13 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=56.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccC----CCCeEEEEEecCccCHHHHHHHHHHHhCCCCC----c---cCCcC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQN----NFDCVIWVVVSKELRLEKIQEDIGKKIGLFDD----S---WKNKS 246 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~----~---~~~~~ 246 (626)
.-.++.|+|.+|+|||||++.+.... .... .-..++|+.....+....+. ++++.++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 56799999999999999999998854 1111 23578999877765555443 34455554320 0 01112
Q ss_pred HHH---HHHHHHHHhC-CCcEEEEEeCCCC
Q 006902 247 FEE---KAVDILRRLG-EKRFVLLLDDIWE 272 (626)
Q Consensus 247 ~~~---~~~~l~~~l~-~k~~llvlDdv~~ 272 (626)
..+ ....+.+.+. .+.-++|+|++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 222 2233444443 4677899999854
No 217
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.36 E-value=0.009 Score=61.22 Aligned_cols=208 Identities=16% Similarity=0.077 Sum_probs=116.2
Q ss_pred cccccccccccccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccch
Q 006902 312 SLELLDISHTYIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVL 390 (626)
Q Consensus 312 ~Lr~L~L~~~~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (626)
.|+.+.+..+ +..++ ..+..+.+|+.+++..+ ++.++...+.++.+|+.+.+..+....
T Consensus 163 ~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~i----------------- 222 (394)
T 4fs7_A 163 SLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYYL----------------- 222 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCEE-----------------
T ss_pred CCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceEe-----------------
Confidence 5677776543 34444 45678889999999876 788888778889999988877654210
Q ss_pred hHHhhccCCCceEEEEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeecc
Q 006902 391 IQELLGLKYLEVLELTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDY 470 (626)
Q Consensus 391 ~~~l~~L~~L~~L~i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 470 (626)
.........|+.+.+... ...+.. .....+..|+.+.+..... .+ ....+..+..|+.+..... .+....
T Consensus 223 ~~~~~~~~~l~~i~ip~~-~~~i~~--~~f~~~~~l~~~~~~~~~~--~i-~~~~F~~~~~l~~~~~~~~----~i~~~~ 292 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDS-FTELGK--SVFYGCTDLESISIQNNKL--RI-GGSLFYNCSGLKKVIYGSV----IVPEKT 292 (394)
T ss_dssp CTTTTTTCCCCEEEECTT-CCEECS--STTTTCSSCCEEEECCTTC--EE-CSCTTTTCTTCCEEEECSS----EECTTT
T ss_pred ehhhcccCCCceEEECCC-ceeccc--ccccccccceeEEcCCCcc--ee-eccccccccccceeccCce----eecccc
Confidence 011122345655544311 000000 0112245666666654321 12 1224555566666554421 111111
Q ss_pred ccccccccCccccCccCEEEEeCCCCCcccc--ccccCCCccEEEEeccCccccccccCccccccccCCCCCcCCcccee
Q 006902 471 TEIVRKRREPFVFRSLHHVTIYSCTKLKDST--FLVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQML 548 (626)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L 548 (626)
+ ..+.+|+.+.+.. .++.+. .+.++.+|+.+.|.+ .++.+... .+.++++|+.+
T Consensus 293 F---------~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~-----------aF~~c~~L~~i 348 (394)
T 4fs7_A 293 F---------YGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKR-----------SFRGCTSLSNI 348 (394)
T ss_dssp T---------TTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT-----------TTTTCTTCCEE
T ss_pred c---------ccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHH-----------hccCCCCCCEE
Confidence 2 2567788887765 355554 266778888888753 35555443 34567778888
Q ss_pred ecCCccccccccCC-CCCCCCccEEEec
Q 006902 549 HLSYLPILKSIYWK-PLPFTHLKEMEVS 575 (626)
Q Consensus 549 ~l~~~~~l~~i~~~-~~~lp~L~~L~i~ 575 (626)
.|.. +++.|... +..|++|+++.+.
T Consensus 349 ~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 349 NFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred EECc--cccEehHHHhhCCCCCCEEEEC
Confidence 7753 35555433 4456777777764
No 218
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.32 E-value=0.012 Score=58.89 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=58.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc---cCCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS---WKNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (626)
.-.++.|+|.+|+||||||.++.... . ..=..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~-~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA-Q--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH-H--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-H--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 56799999999999999999999876 2 222357889887776654 45666654321 1233455555555
Q ss_pred HHHhC-CCcEEEEEeCCCCc
Q 006902 255 LRRLG-EKRFVLLLDDIWER 273 (626)
Q Consensus 255 ~~~l~-~k~~llvlDdv~~~ 273 (626)
...+. .+.-++|+|.+...
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTC
T ss_pred HHHhhhcCCCeEEehHhhhh
Confidence 54443 45558889998543
No 219
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.23 E-value=0.013 Score=58.23 Aligned_cols=38 Identities=34% Similarity=0.334 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcC--CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 166 QLEQVWRCLAEE--SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 166 ~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....+..++... ....+.|+|++|+||||||+.+.+..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 344555555543 34678999999999999999999987
No 220
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.22 E-value=0.017 Score=55.72 Aligned_cols=46 Identities=24% Similarity=0.230 Sum_probs=34.6
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++.|.++.++.|.+.+.. .-.+-+.++|++|.||||||+.+....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 4678888888888776531 112239999999999999999999876
No 221
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.18 E-value=0.0066 Score=59.35 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999987
No 222
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.17 E-value=0.032 Score=54.20 Aligned_cols=88 Identities=14% Similarity=0.201 Sum_probs=57.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc---CCcCHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW---KNKSFEEKAVDILR 256 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~ 256 (626)
.++-|.|.+|+||||||.++..... ....=..++|++....++.. .+++++.+.+.. ...+.++....+.+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 4789999999999999999887762 11112468999988887754 367777654321 22344554122333
Q ss_pred Hh----CCCcEEEEEeCCCCc
Q 006902 257 RL----GEKRFVLLLDDIWER 273 (626)
Q Consensus 257 ~l----~~k~~llvlDdv~~~ 273 (626)
.+ .++.-++|+|-+...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 33 356789999999544
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.14 E-value=0.016 Score=60.42 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=35.7
Q ss_pred CcccchHHHHHHHHHHHh---c---------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLA---E---------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++.++++.+.+. . .-.+-+.|+|++|+|||+||+.+.+..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999988777766543 1 113457899999999999999999976
No 224
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.14 E-value=0.026 Score=56.42 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=58.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccC----CCCeEEEEEecCccCHHHHHHHHHHHhCCCCC----------ccC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQN----NFDCVIWVVVSKELRLEKIQEDIGKKIGLFDD----------SWK 243 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~----------~~~ 243 (626)
.-.++.|+|.+|+||||||.++.... .... .-..++|++....++.+.+.. +++.++.... ...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 56789999999999999999998764 1111 234789999888877776654 4455554321 001
Q ss_pred CcCHHHHHHHHHHHhC---CCcEEEEEeCCCC
Q 006902 244 NKSFEEKAVDILRRLG---EKRFVLLLDDIWE 272 (626)
Q Consensus 244 ~~~~~~~~~~l~~~l~---~k~~llvlDdv~~ 272 (626)
......+...+...+. .+.-++|+|.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1122233333444443 4566889998843
No 225
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.14 E-value=0.0028 Score=60.64 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=38.1
Q ss_pred cccccccccccchH----HhhhcccchhcccCCCCccccc---hhhhcCCCcccEEEccCCCCC
Q 006902 316 LDISHTYIQELPEE----LKLLVNLKCLNLRGTGQLNKIP---RQLISKFSRLRVLRMLGTGPF 372 (626)
Q Consensus 316 L~L~~~~i~~LP~~----i~~L~~L~~L~l~~~~~l~~lP---~~~i~~L~~L~~L~l~~~~~~ 372 (626)
++++.+....++.. ..++.+|+.|+|++| .+..++ .. +.++++|++|++++|.+.
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~-~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSI-VQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTH-HHHSTTCCEEECTTSCCC
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhH-HhhCCCCCEEECCCCccC
Confidence 44555544444332 256788999999998 577655 43 678999999999988865
No 226
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.13 E-value=0.0025 Score=62.12 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=45.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEe--cCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVV--SKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDIL 255 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 255 (626)
..+++.|+|++|+|||+||.++.... .. .++|+++ ... +.. ...+.+.....+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~ 177 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIA 177 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhh-------------hhh-----hhcCHHHHHHHHH
Confidence 34677899999999999999998752 11 2355665 222 000 0134555666666
Q ss_pred HHhCCCcEEEEEeCCCC
Q 006902 256 RRLGEKRFVLLLDDIWE 272 (626)
Q Consensus 256 ~~l~~k~~llvlDdv~~ 272 (626)
+.+...+ ++|+|++..
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 6666556 999999954
No 227
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.12 E-value=0.037 Score=56.54 Aligned_cols=45 Identities=11% Similarity=0.229 Sum_probs=29.4
Q ss_pred ccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCC
Q 006902 323 IQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGT 369 (626)
Q Consensus 323 i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~ 369 (626)
+..++ ..+..+.+|+.+.+... +..++...+..+.+|+.+.+..+
T Consensus 125 ~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 125 VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred cceehhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 33443 34566777777777654 56677766777778887777654
No 228
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.11 E-value=0.0073 Score=63.45 Aligned_cols=46 Identities=30% Similarity=0.354 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.+..++++.+++.. ....-+.|+|.+|+|||++|+.+.+..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999999888752 345668999999999999999998765
No 229
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.07 E-value=0.02 Score=56.86 Aligned_cols=92 Identities=16% Similarity=0.257 Sum_probs=58.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccC----CCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc-------cCCcC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQN----NFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS-------WKNKS 246 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-------~~~~~ 246 (626)
.-.++.|+|.+|+||||||.++.... .... .-..++|++....++.+++.. +++.++..... ....+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCC
Confidence 45789999999999999999998764 1111 024789999888877777654 45566543210 01122
Q ss_pred HH---HHHHHHHHHhC--CCcEEEEEeCCC
Q 006902 247 FE---EKAVDILRRLG--EKRFVLLLDDIW 271 (626)
Q Consensus 247 ~~---~~~~~l~~~l~--~k~~llvlDdv~ 271 (626)
.+ +....+...+. .+.-++|+|.+.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 22 23344555553 456688889884
No 230
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.05 E-value=0.02 Score=57.06 Aligned_cols=40 Identities=10% Similarity=0.249 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCC-CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 164 QSQLEQVWRCLAEES-AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 164 ~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++..+.+.+.+..++ ...+-++|+.|+|||++|+.+....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 556777888887765 4578999999999999999999876
No 231
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.95 E-value=0.0079 Score=60.95 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=37.2
Q ss_pred CcccchHHHHHH---HHHHHhcCCC--eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQ---VWRCLAEESA--GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|++..++. +.+.+..... ..+-|+|++|+|||++|+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999988776 4555555433 589999999999999999999987
No 232
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.94 E-value=0.0099 Score=54.46 Aligned_cols=42 Identities=19% Similarity=0.445 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHhc---CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 162 GLQSQLEQVWRCLAE---ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 162 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|++.++.+.+.+.. ....+|+|.|..|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677888888775 356899999999999999999998866
No 233
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.91 E-value=0.0074 Score=59.43 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHHHHhc--------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE--------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.++.++.+...+.. ....-+-++|.+|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999888754 234567899999999999999999876
No 234
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.89 E-value=0.031 Score=56.14 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=57.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc---cCCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS---WKNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (626)
.-.++.|.|.+|+||||||.++..... ..-..++|++....++.. .++.++.+... ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~---~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH---HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 457889999999999999999887762 222368999988776654 24556554321 1223455665666
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 006902 255 LRRLG-EKRFVLLLDDIW 271 (626)
Q Consensus 255 ~~~l~-~k~~llvlDdv~ 271 (626)
....+ .+.-+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 55554 345588999984
No 235
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.89 E-value=0.013 Score=57.74 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHhcC---CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 163 LQSQLEQVWRCLAEE---SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 163 r~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+...++.+.+++..- ....+.|+|..|+|||+||+.+++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344555666666642 25678899999999999999999987
No 236
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.87 E-value=0.0042 Score=56.14 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=49.3
Q ss_pred chHHhhhcccchhcccCCCCcc-----ccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCc
Q 006902 327 PEELKLLVNLKCLNLRGTGQLN-----KIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLE 401 (626)
Q Consensus 327 P~~i~~L~~L~~L~l~~~~~l~-----~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 401 (626)
...+....+|++|+|++|..+. .+... +...++|++|++.+|.+..-. -......+...+.|+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g-----------~~~l~~~L~~n~~L~ 96 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPV-----------AFALAEMLKVNNTLK 96 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHH-----------HHHHHHHHHHCSSCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHH-----------HHHHHHHHHhCCCcC
Confidence 3445566778888887772233 24443 566677888888777653100 011233344455666
Q ss_pred eEEEEEech--hhHHHHhhccccccceeEEEE
Q 006902 402 VLELTLGSY--HALQILLSSNKLKSCIRSLFL 431 (626)
Q Consensus 402 ~L~i~~~~~--~~~~~l~~~~~~~~~L~~L~l 431 (626)
.|++..+.. .+...+.......+.|+.|++
T Consensus 97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 97 SLNVESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp EEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred EEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 666654432 233344444444455666666
No 237
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.86 E-value=0.084 Score=53.84 Aligned_cols=55 Identities=11% Similarity=0.240 Sum_probs=28.1
Q ss_pred cccccccccc---cccccc-hHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccC
Q 006902 312 SLELLDISHT---YIQELP-EELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLG 368 (626)
Q Consensus 312 ~Lr~L~L~~~---~i~~LP-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~ 368 (626)
+|+.+.+..+ .++.++ .++..+.+|+.+.+..+ +..++...+..+.+|+.+.+..
T Consensus 88 ~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 88 SLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPE 146 (394)
T ss_dssp TCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCT
T ss_pred cCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccc
Confidence 4444444433 233343 23445555555555443 4555555556666666666653
No 238
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.81 E-value=0.031 Score=55.89 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=57.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc---cCCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS---WKNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (626)
.-.++.|+|.+|+||||||.++..... ..=..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 567899999999999999999987662 222468899988776653 25556644321 1223455555555
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 006902 255 LRRLG-EKRFVLLLDDIWE 272 (626)
Q Consensus 255 ~~~l~-~k~~llvlDdv~~ 272 (626)
..... .+.-++|+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 54443 3456899999843
No 239
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.75 E-value=0.033 Score=58.36 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=35.2
Q ss_pred CcccchHHHHHHHHHHHh---cC---------CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLA---EE---------SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++.++++.+... .. -.+-+.|+|.+|+||||||+.+.+..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 568999888777665543 21 12348999999999999999999876
No 240
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.72 E-value=0.0041 Score=53.53 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=33.8
Q ss_pred CcccchHHHHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
-.++|++..++++.+.+.. ....-|-|+|..|+|||++|+.+.+..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 4578999888888888753 333447799999999999999887754
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.69 E-value=0.027 Score=55.76 Aligned_cols=92 Identities=15% Similarity=0.233 Sum_probs=58.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccC---------CC-----CeEEEEEecCccCHHHHHHHHHHHhCCCCCc--
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQN---------NF-----DCVIWVVVSKELRLEKIQEDIGKKIGLFDDS-- 241 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---------~F-----~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-- 241 (626)
.-.++-|+|.+|+||||||.++.... .... .. ..++|++....++.+++.+ +++.++.+...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVL 174 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHh
Confidence 56799999999999999999988753 1111 11 4689999888877777664 34556543210
Q ss_pred -----cCCcCHH---HHHHHHHHHhC--CCcEEEEEeCCC
Q 006902 242 -----WKNKSFE---EKAVDILRRLG--EKRFVLLLDDIW 271 (626)
Q Consensus 242 -----~~~~~~~---~~~~~l~~~l~--~k~~llvlDdv~ 271 (626)
....+.+ +....+...+. .+.-++|+|.+.
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0112222 23344555554 345688889884
No 242
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.67 E-value=0.041 Score=58.72 Aligned_cols=46 Identities=33% Similarity=0.395 Sum_probs=37.0
Q ss_pred CcccchHHHHHHHHHHHhc------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++.++.+.+.+.- ....++.++|++|+||||||+.+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578988888877665532 246689999999999999999999877
No 243
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.63 E-value=0.0079 Score=60.06 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHHHhc-----CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-----ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.+..++.+...+.. .....+.++|+.|+||||||+.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4568888888877766653 244678999999999999999999977
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.59 E-value=0.012 Score=54.11 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 165 SQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 165 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+-+++|.+.+.. ....+++|+|..|.|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566666653 356799999999999999999999877
No 245
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.51 E-value=0.0057 Score=56.80 Aligned_cols=112 Identities=17% Similarity=-0.044 Sum_probs=62.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRR 257 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (626)
...++.|.|..|.||||++..+.+.. . .+-..++.+....... -...+++.++............+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~-~--~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL-E--YADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH-H--HTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 45788899999999999999988877 2 2222344444333211 1224455555433222223334455555554
Q ss_pred hCCCcE-EEEEeCCCCc--cccccccCCCCCCCCCCcEEEEecCC
Q 006902 258 LGEKRF-VLLLDDIWER--VDLTEVGVPLPSPQNTTSKVVFTTRF 299 (626)
Q Consensus 258 l~~k~~-llvlDdv~~~--~~~~~l~~~~~~~~~~~s~iivTtr~ 299 (626)
+.+.++ ++|+|.+... +..+.+ ..+. + .|-.||+|-+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~-~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVA-NILA-E--NGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHH-HHHH-H--TTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHH-HHHH-h--CCCeEEEEecc
Confidence 444444 8999998642 122222 1121 2 26778888874
No 246
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.51 E-value=0.05 Score=53.00 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=46.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCccCCcCHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK-ELRLEKIQEDIGKKIGLFDDSWKNKSFEEKAVDILR 256 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (626)
...+++++|.+|+||||++..+.... ...... .+..+.... .....+-+....+..+.+.. ...+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 45799999999999999999998877 322222 345555432 22333334444444444321 1123333333333
Q ss_pred HhCCCcEEEEEeC
Q 006902 257 RLGEKRFVLLLDD 269 (626)
Q Consensus 257 ~l~~k~~llvlDd 269 (626)
.+ .+.=++|+|-
T Consensus 179 ~~-~~~dlvIiDT 190 (296)
T 2px0_A 179 LF-SEYDHVFVDT 190 (296)
T ss_dssp HG-GGSSEEEEEC
T ss_pred Hh-cCCCEEEEeC
Confidence 33 3344677783
No 247
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.48 E-value=0.014 Score=56.08 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=40.2
Q ss_pred CcccchHHHHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 006902 158 PTIVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE 221 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 221 (626)
..++|.+..+.++.+.+.. ....-+-|+|..|+|||++|+.+.+.. ...-...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~---~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS---SRWQGPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS---TTTTSCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc---CccCCCeEEEecCCC
Confidence 4578999888888777653 233557799999999999999999865 222123455655543
No 248
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.47 E-value=0.043 Score=54.93 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=54.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc---CCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW---KNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (626)
.-.++.|.|.+|+||||||.++..... ..=..++|++....++.. .++.++...+.+ ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~---~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 567899999999999999999888762 222368999988777643 245555543211 122344444444
Q ss_pred HHHh-CCCcEEEEEeCCC
Q 006902 255 LRRL-GEKRFVLLLDDIW 271 (626)
Q Consensus 255 ~~~l-~~k~~llvlDdv~ 271 (626)
.... ..+.-++|+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 3333 2345588999874
No 249
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.44 E-value=0.017 Score=63.85 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=56.7
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRL 224 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 224 (626)
.++.|.++.+++|.+.+.- ...+-|-++|++|.|||+||+++.+.. ..+ .+.+..+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~---- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE---- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH----
Confidence 4567888888877776531 135678999999999999999999876 222 23343221
Q ss_pred HHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 006902 225 EKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIWE 272 (626)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~~ 272 (626)
+. .. +.......+...+.......+.+|++|++..
T Consensus 274 --l~-------sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 274 --IM-------SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp --HH-------SS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred --hh-------cc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 11 00 1112222233333344456789999999854
No 250
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.22 E-value=0.025 Score=56.02 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=34.1
Q ss_pred cchHHHHHHHHHHHh----cCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 161 VGLQSQLEQVWRCLA----EESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 161 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|+.+.-.+.+++.+. .+....|.|+|+.|+||||+++.+....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 556666777777764 3456679999999999999999998876
No 251
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.17 E-value=0.057 Score=50.35 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=32.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQED 230 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~ 230 (626)
.-.++.|+|.+|+|||||++.+.... .... ..++|+.... ....+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~--~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG-LRDG--DPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH-HHHT--CCEEEEESSS--CHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH-HHCC--CeEEEEEccc--CHHHHHHH
Confidence 45789999999999999999998765 2111 2466665443 34444443
No 252
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.14 E-value=0.011 Score=66.47 Aligned_cols=46 Identities=28% Similarity=0.347 Sum_probs=37.8
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++.++++.+++.. .....|.|+|.+|+||||||+.+.+..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4578999888888888752 245679999999999999999998765
No 253
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.09 E-value=0.026 Score=52.55 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 164 QSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 164 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++..+.+...+......+|.|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555666656678899999999999999999998875
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.03 E-value=0.014 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 255
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.03 E-value=0.1 Score=53.50 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...||.++|.+|+||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 36899999999999999999998877
No 256
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.00 E-value=0.02 Score=57.02 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=37.8
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|+++.++.+...+..+ .-+-++|.+|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 56799999999998888764 357889999999999999998865
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.00 E-value=0.011 Score=52.40 Aligned_cols=20 Identities=30% Similarity=0.503 Sum_probs=18.9
Q ss_pred eEEEEEcCCCchHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRI 199 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v 199 (626)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 258
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.99 E-value=0.017 Score=56.64 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=37.4
Q ss_pred CcccchHHHHHHHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|++..+.++.+.+.. ....-|-|+|..|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 4579999999988888764 344557799999999999999999865
No 259
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.96 E-value=0.062 Score=53.73 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=55.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCC----CeEEEEEecCccCHHHHHHHHHHHhCCCCCc----------cC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNF----DCVIWVVVSKELRLEKIQEDIGKKIGLFDDS----------WK 243 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F----~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~----------~~ 243 (626)
.-.++.|+|..|+|||||++++.... ...... ..++|++....+....+ ..+++..+..... +.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 56899999999999999999998765 111111 24689987666544443 3345544332110 01
Q ss_pred CcCHHHHHHHHHHHhC------CCcEEEEEeCCCCc
Q 006902 244 NKSFEEKAVDILRRLG------EKRFVLLLDDIWER 273 (626)
Q Consensus 244 ~~~~~~~~~~l~~~l~------~k~~llvlDdv~~~ 273 (626)
.....++...+...+. .+.-++|+|.+-..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1112233344444443 46779999998654
No 260
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.91 E-value=0.15 Score=50.32 Aligned_cols=58 Identities=28% Similarity=0.439 Sum_probs=36.5
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC-ccCHHHHHHHHHHHhCC
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK-ELRLEKIQEDIGKKIGL 237 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~l~~~i~~~l~~ 237 (626)
....+++|+|..|+||||+++.+.... .. ... .+.++...- .....+-++...+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l-~~-~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL-KN-HGF-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH-HH-TTC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 356899999999999999999999877 32 222 234443221 12333444555566653
No 261
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.87 E-value=0.015 Score=51.81 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998865
No 262
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.87 E-value=0.016 Score=52.96 Aligned_cols=26 Identities=38% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|+|+.|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 263
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.84 E-value=0.1 Score=52.96 Aligned_cols=92 Identities=13% Similarity=0.196 Sum_probs=54.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccC----CCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc-------cCCcC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQN----NFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS-------WKNKS 246 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-------~~~~~ 246 (626)
.-.++.|+|.+|+|||||+.++.-.. .... .-..++|++....+....+. .+++.++..... ....+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~-~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC-QIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh-ccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCC
Confidence 56799999999999999999876433 1111 23468999877766665543 366666653210 01112
Q ss_pred HH---HHHHHHHHHhC-CCcEEEEEeCCC
Q 006902 247 FE---EKAVDILRRLG-EKRFVLLLDDIW 271 (626)
Q Consensus 247 ~~---~~~~~l~~~l~-~k~~llvlDdv~ 271 (626)
.. .....+...+. .+.-++|+|.+.
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 22 22233333332 456788999874
No 264
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.82 E-value=0.015 Score=48.99 Aligned_cols=54 Identities=24% Similarity=0.366 Sum_probs=44.7
Q ss_pred cccccccccc--ccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCC
Q 006902 315 LLDISHTYIQ--ELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGP 371 (626)
Q Consensus 315 ~L~L~~~~i~--~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~ 371 (626)
+++.++.+++ .+|..+. .+|++|+|++| .+..||.+++..+++|++|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 4677777887 8886543 36899999999 69999998788999999999999875
No 265
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.80 E-value=0.025 Score=52.41 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 161 VGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 161 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
-+.++..+.+.+.+......+|.|+|.+|+|||||+..+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445666666666666678999999999999999999998876
No 266
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.79 E-value=0.022 Score=51.96 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=25.7
Q ss_pred hcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 175 AEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 175 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
......+|.|+|+.|.||||+|+.+....
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999877
No 267
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.76 E-value=0.034 Score=53.97 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998877
No 268
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.72 E-value=0.033 Score=53.02 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=33.4
Q ss_pred CcccchHHHHHHHHHHHh---c---------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLA---E---------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++.+.++.+... . .-.+-+.|+|..|+||||||+.+.+..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 467888877666654432 1 012238999999999999999999876
No 269
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.70 E-value=0.017 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.69 E-value=0.02 Score=52.24 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....+++|+|+.|.||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998765
No 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.68 E-value=0.016 Score=52.42 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
...+++|+|+.|+||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999764
No 272
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.62 E-value=0.029 Score=55.91 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=35.5
Q ss_pred HHHHHHhc-CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc
Q 006902 169 QVWRCLAE-ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL 222 (626)
Q Consensus 169 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~ 222 (626)
++++.+.. ..-..++|+|..|+|||||++.+.+........+. ++++-+.+..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 34555544 45678999999999999999999887621112332 4456666653
No 273
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.59 E-value=0.021 Score=51.39 Aligned_cols=116 Identities=21% Similarity=0.177 Sum_probs=59.6
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC---ccCHHHHHHHHHHHhCC--CCCcc--CCc------
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK---ELRLEKIQEDIGKKIGL--FDDSW--KNK------ 245 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~---~~~~~~l~~~i~~~l~~--~~~~~--~~~------ 245 (626)
-..|-|++-.|.||||+|-...-... ...+ .+.++...+ ......++..+. +.. ....| ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~--g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV--GHGK-NVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH--HTTC-CEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHH
Confidence 34566677777999999988877662 3333 455554433 223334443331 100 00011 111
Q ss_pred -CHHHHHHHHHHHhCCCcE-EEEEeCCCCc-----cccccccCCCCCCCCCCcEEEEecCCh
Q 006902 246 -SFEEKAVDILRRLGEKRF-VLLLDDIWER-----VDLTEVGVPLPSPQNTTSKVVFTTRFI 300 (626)
Q Consensus 246 -~~~~~~~~l~~~l~~k~~-llvlDdv~~~-----~~~~~l~~~~~~~~~~~s~iivTtr~~ 300 (626)
..........+.+.+.+| |+|||++-.. ...+.+...+. .......||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCCC
Confidence 112234556666665555 8999998331 22222222222 223467899999963
No 274
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.57 E-value=0.25 Score=50.59 Aligned_cols=91 Identities=21% Similarity=0.152 Sum_probs=48.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCcc-CCcCHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK-ELRLEKIQEDIGKKIGLFDDSW-KNKSFEEKAVDIL 255 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 255 (626)
...+|.++|.+|+||||++..+.... .. ... .+..++... .....+-+.......+.+.... ...+.........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l-~~-~G~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY-KK-RGY-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH-HH-TTC-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HH-cCC-eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 36899999999999999999998877 32 222 344444332 1223333444445555432211 1223333333333
Q ss_pred HHhC-CCcEEEEEeCCC
Q 006902 256 RRLG-EKRFVLLLDDIW 271 (626)
Q Consensus 256 ~~l~-~k~~llvlDdv~ 271 (626)
..+. ...-++++|-..
T Consensus 173 ~~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HHTTTTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 3443 233355667553
No 275
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.56 E-value=0.056 Score=56.69 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=37.6
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++|.++.++.+...+..+ .-|-++|.+|+|||+||+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 56799999999988887765 357899999999999999998865
No 276
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.53 E-value=0.024 Score=50.99 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|+|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 277
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.52 E-value=0.017 Score=51.20 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998865
No 278
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.52 E-value=0.12 Score=50.34 Aligned_cols=89 Identities=18% Similarity=0.255 Sum_probs=48.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHH--HHHHHHHHHhCCCCCcc-CCcCHHHH-HHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLE--KIQEDIGKKIGLFDDSW-KNKSFEEK-AVD 253 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~--~l~~~i~~~l~~~~~~~-~~~~~~~~-~~~ 253 (626)
...++.|+|.+|+||||++..+.... ... . ..+.++... .+... +-+..+++..+.+.-.. ...+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l-~~~-g-~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF-VDE-G-KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH-HHT-T-CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH-Hhc-C-CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 45799999999999999999999877 322 1 234555443 22222 22334555555432110 11222222 233
Q ss_pred HHHHhCCCcEEEEEeCC
Q 006902 254 ILRRLGEKRFVLLLDDI 270 (626)
Q Consensus 254 l~~~l~~k~~llvlDdv 270 (626)
+...+..+.-++|+|-.
T Consensus 179 l~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHhcCCCEEEEECC
Confidence 44444444447777855
No 279
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.51 E-value=0.023 Score=51.11 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998876
No 280
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.47 E-value=0.022 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINN 201 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~ 201 (626)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 281
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.47 E-value=0.45 Score=53.02 Aligned_cols=60 Identities=20% Similarity=0.357 Sum_probs=44.5
Q ss_pred CcccchHHHHHHHHHHHhcC---------CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 006902 158 PTIVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK 220 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 220 (626)
..++|.+..++.+...+... ....+-++|.+|+|||++|+.+.+... ..-...+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 56899999999888888631 223689999999999999999998762 2223445565544
No 282
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.42 E-value=0.042 Score=53.09 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=34.0
Q ss_pred CcccchHHHHHHHHHHHhc--C----------CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE--E----------SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--~----------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|.++.++++.+.... . -.+-+.|+|..|+||||||+.+.+..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 5688988777766554431 0 11238999999999999999999876
No 283
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.39 E-value=0.043 Score=57.24 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=36.6
Q ss_pred CcccchHHHHHHHHHHH---hcC--CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCL---AEE--SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.++.++.+..++ ..+ ..+-+-++|++|+|||++|+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 57899999888655544 333 23568899999999999999999987
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.38 E-value=0.025 Score=51.04 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999887
No 285
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.37 E-value=0.023 Score=55.88 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVS 219 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s 219 (626)
+..+||+|.|-|||||||.|-.+.-... . .. ..+.-|++.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA-~-~G-kkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS-I-LG-KRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH-H-TT-CCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH-H-CC-CeEEEEecC
Confidence 4689999999999999999998887772 1 22 235666655
No 286
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.37 E-value=0.02 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 287
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.36 E-value=0.042 Score=55.75 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=36.6
Q ss_pred CcccchHHHHHHHHHHHhc------------------------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE------------------------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------------------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.++.++.+...+.. .....+.++|++|+|||++|+.+.+..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999988888877721 123468899999999999999999866
No 288
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.34 E-value=0.039 Score=55.68 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHHHHhc---------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 159 TIVGLQSQLEQVWRCLAE---------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~---------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999998888831 134568899999999999999999866
No 289
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.31 E-value=0.028 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++.|+|+.|.||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 290
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.29 E-value=0.37 Score=49.46 Aligned_cols=70 Identities=17% Similarity=0.297 Sum_probs=41.9
Q ss_pred HHHHHHHHHhc---------CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC-ccCHHHHHHHHHHHh
Q 006902 166 QLEQVWRCLAE---------ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK-ELRLEKIQEDIGKKI 235 (626)
Q Consensus 166 ~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~l~~~i~~~l 235 (626)
-.+++.++|.. ...++|.++|.||+||||++..+.... ..+... .+.-++... .......+.......
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l-~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~ 155 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL-REKHKK-KVLVVSADVYRPAAIKQLETLAEQV 155 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH-HHTSCC-CEEEEECCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH-HHhcCC-eEEEEecCCCCccHHHHHHhhcccC
Confidence 44556666643 236799999999999999999999887 322122 345555442 223333333344444
Q ss_pred CC
Q 006902 236 GL 237 (626)
Q Consensus 236 ~~ 237 (626)
+.
T Consensus 156 ~l 157 (433)
T 2xxa_A 156 GV 157 (433)
T ss_dssp TC
T ss_pred Ce
Confidence 43
No 291
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.26 E-value=0.028 Score=50.22 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++|+|..|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 292
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.23 E-value=0.027 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999877
No 293
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.22 E-value=0.028 Score=50.71 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|.|.|+.|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 294
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.19 E-value=0.026 Score=50.43 Aligned_cols=25 Identities=44% Similarity=0.391 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|.|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998876
No 295
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.18 E-value=0.025 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 296
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.18 E-value=0.033 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998866
No 297
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.16 E-value=0.25 Score=47.99 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=48.2
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCcc-CCcCHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE-LRLEKIQEDIGKKIGLFDDSW-KNKSFEEKAVDILR 256 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 256 (626)
..++.++|.+|+||||++..+.... ... =..+.++..... ......++......+.+.-.. ...+.........+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~-~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY-KKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH-HHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 5699999999999999999998877 322 224556654422 222333444555555432110 12234444434444
Q ss_pred HhCCCcE-EEEEeCC
Q 006902 257 RLGEKRF-VLLLDDI 270 (626)
Q Consensus 257 ~l~~k~~-llvlDdv 270 (626)
.+..+.| ++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 4431222 5666653
No 298
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.12 E-value=0.022 Score=57.04 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=34.9
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.+..++.+...+......-+-|+|.+|+|||++|+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4589998877665555443333348899999999999999999866
No 299
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.12 E-value=0.17 Score=51.79 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=47.1
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHH--HHHHHHHHhCCCCCcc-CCcCHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEK--IQEDIGKKIGLFDDSW-KNKSFEEKAVDIL 255 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~--l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 255 (626)
..++.|+|.+|+||||++..+.... . ..=..+..+.. ..+.... -++......+.+.-.. ...+...+.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l-~--~~g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY-K--GKGRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH-H--TTTCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 4789999999999999999999887 3 22223455554 3333322 2344455555432110 1123344433333
Q ss_pred HHhCCCcE-EEEEeCC
Q 006902 256 RRLGEKRF-VLLLDDI 270 (626)
Q Consensus 256 ~~l~~k~~-llvlDdv 270 (626)
+.++.+.| ++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 44422223 5566643
No 300
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.09 E-value=0.19 Score=49.46 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=38.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKK 234 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~ 234 (626)
.-.++.|.|.+|+||||+|.++.... .. .. ..++|++.- .+.+++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~-~g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SD-ND-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HT-TT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HH-cC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 56789999999999999999998766 22 22 568887755 4566776666654
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.07 E-value=0.031 Score=53.14 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|.|+|+.|+||||||+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998876
No 302
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.06 E-value=0.03 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINN 201 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~ 201 (626)
.+++|+|+.|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 303
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.04 E-value=0.13 Score=52.94 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=36.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc-CHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL-RLEKIQEDIG 232 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~l~~~i~ 232 (626)
+-..++|+|..|+|||||+..+.... .. ..-+.++++-+.+.. ...++..++.
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~-~~-~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNI-AQ-EHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHH-HH-HTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhh-hh-ccCcEEEEeeeccCchHHHHHHHHhh
Confidence 34468999999999999999998876 22 233456666666654 3445555454
No 304
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.02 E-value=0.024 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999865
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.95 E-value=0.028 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|.|+.|+||||+|+.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998876
No 306
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.93 E-value=0.025 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRIN 200 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~ 200 (626)
...+++|+|..|.|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45689999999999999999643
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.92 E-value=0.029 Score=51.37 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999998765
No 308
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.92 E-value=0.036 Score=52.42 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+++|+|+.|+||||+++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999766
No 309
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.91 E-value=0.039 Score=50.70 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|+|+|..|.|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 310
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.87 E-value=0.035 Score=50.81 Aligned_cols=25 Identities=40% Similarity=0.406 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+++|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999997754
No 311
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.87 E-value=0.035 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998766
No 312
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.86 E-value=0.032 Score=51.01 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINN 201 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~ 201 (626)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.83 E-value=0.038 Score=48.69 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998876
No 314
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.80 E-value=0.037 Score=50.90 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+++|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 315
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.77 E-value=0.032 Score=50.88 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998865
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.76 E-value=0.042 Score=49.75 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|.|+.|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998866
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.73 E-value=0.041 Score=49.70 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999998766
No 318
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.73 E-value=0.066 Score=51.91 Aligned_cols=26 Identities=35% Similarity=0.310 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 319
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.71 E-value=0.042 Score=49.33 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
....|.|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 320
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.69 E-value=0.21 Score=51.72 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+++|+|..|+|||||++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999999877
No 321
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.67 E-value=0.032 Score=50.06 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998876
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.65 E-value=0.043 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..|.+.|+.|+||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998765
No 323
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.60 E-value=0.048 Score=47.98 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...++.|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999999877
No 324
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.59 E-value=0.049 Score=50.01 Aligned_cols=25 Identities=24% Similarity=0.431 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|.|+.|+||||+|+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999887
No 325
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.58 E-value=0.12 Score=47.89 Aligned_cols=58 Identities=26% Similarity=0.418 Sum_probs=38.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhcc----CCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQ----NNFDCVIWVVVSKELRLEKIQEDIGKKIGL 237 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~ 237 (626)
.-.+++|+|..|+|||||++.+.... ... ..-..++|+.....+.... ...+.+..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~-~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 56799999999999999999998754 111 1234578887655444433 3344444443
No 326
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.56 E-value=0.043 Score=49.78 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 327
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.56 E-value=0.046 Score=49.76 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINN 201 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~ 201 (626)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999875
No 328
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.53 E-value=0.045 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998876
No 329
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.51 E-value=0.041 Score=50.51 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998865
No 330
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.51 E-value=0.068 Score=50.77 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998765
No 331
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.49 E-value=0.038 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 332
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.48 E-value=0.042 Score=50.35 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
...+|+|+|+.|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999988764
No 333
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.43 E-value=0.46 Score=48.77 Aligned_cols=63 Identities=25% Similarity=0.372 Sum_probs=45.7
Q ss_pred HHHHHhc-CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc-CHHHHHHHHHHH
Q 006902 170 VWRCLAE-ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL-RLEKIQEDIGKK 234 (626)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~l~~~i~~~ 234 (626)
+++.|.. .+-.-++|+|..|+|||+|++.+.+... +.+-+.++++-+.+.. ...++.+++.+.
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4555544 3567789999999999999999988651 3455778888777764 456677777654
No 334
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.42 E-value=0.051 Score=49.22 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+++.|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 335
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.41 E-value=0.048 Score=49.24 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 336
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.40 E-value=0.049 Score=53.51 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+++|+|..|+|||||++.+....
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 56799999999999999999999877
No 337
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.40 E-value=0.049 Score=47.48 Aligned_cols=27 Identities=37% Similarity=0.348 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..-.+++|+|..|.|||||++.+....
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456799999999999999999998754
No 338
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.39 E-value=0.051 Score=48.97 Aligned_cols=25 Identities=28% Similarity=0.390 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998876
No 339
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.36 E-value=0.049 Score=49.62 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|.|+.|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998876
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.35 E-value=0.042 Score=50.33 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINN 201 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~ 201 (626)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 341
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.34 E-value=0.056 Score=49.83 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+||.|.|++|+||+|.|+.+...+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999877
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.33 E-value=0.081 Score=51.93 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|+|.|..|+||||+|+.+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999998776
No 343
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.32 E-value=0.055 Score=49.36 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|.|+.|+||||+|+.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998755
No 344
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.29 E-value=0.031 Score=51.47 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|+|.|..|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999877
No 345
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.24 E-value=0.066 Score=54.94 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHHHhc--------------CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAE--------------ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.++.++.+...+.. -..+-+.++|++|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 5689999988888777632 123568899999999999999999876
No 346
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.22 E-value=0.04 Score=51.10 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998754
No 347
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.16 E-value=0.045 Score=48.47 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=22.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|+|..|.|||||++.+....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999887
No 348
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.14 E-value=0.058 Score=51.50 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999875
No 349
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.13 E-value=0.048 Score=48.96 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999998765
No 350
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.11 E-value=0.059 Score=48.74 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56899999999999999999998764
No 351
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.07 E-value=0.063 Score=49.27 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCe
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDC 212 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~ 212 (626)
..+|.|.|+.|+||||+|+.+.... . ..+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l-~-~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL-K-NNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH-H-HTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcE
Confidence 4689999999999999999999876 2 234554
No 352
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.02 E-value=0.07 Score=50.40 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|+|.|..|.|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 353
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.02 E-value=0.04 Score=49.26 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=18.1
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998765
No 354
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.02 E-value=0.064 Score=49.32 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|.|+.|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999877
No 355
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.00 E-value=0.99 Score=47.18 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998776
No 356
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.00 E-value=0.31 Score=47.30 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+++|+|.+|+||||++..+....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999887
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.98 E-value=0.056 Score=51.34 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|+|+|+.|.||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45699999999999999999998765
No 358
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.95 E-value=0.29 Score=48.39 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=37.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKK 234 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~ 234 (626)
...++.|.|.+|+||||+|..+.... .. .=..++|++. ..+.+++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~-a~--~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSA-LN--DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH-HH--TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HH--cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 45789999999999999999998877 22 2235667655 34667777776554
No 359
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.92 E-value=0.056 Score=50.04 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999998865
No 360
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.89 E-value=0.34 Score=50.00 Aligned_cols=101 Identities=22% Similarity=0.309 Sum_probs=63.1
Q ss_pred HHHHHhc-CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCC------Cc
Q 006902 170 VWRCLAE-ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKEL-RLEKIQEDIGKKIGLFD------DS 241 (626)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~------~~ 241 (626)
+++.|.. .+-.-++|+|..|+|||+|+..+.+... +.+-+.++++-+.+.. ...++.+++.+.-.... ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 3455543 3556789999999999999999988751 3455788888887765 45667777665322210 00
Q ss_pred -----cCCcCH------HHHHHHHHHHhC---CCcEEEEEeCCCC
Q 006902 242 -----WKNKSF------EEKAVDILRRLG---EKRFVLLLDDIWE 272 (626)
Q Consensus 242 -----~~~~~~------~~~~~~l~~~l~---~k~~llvlDdv~~ 272 (626)
..++.. -..+-.+.++++ ++..|+++||+..
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011111 122333445554 5799999999843
No 361
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.87 E-value=0.064 Score=50.91 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998865
No 362
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.86 E-value=0.064 Score=49.44 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998766
No 363
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.85 E-value=0.07 Score=49.41 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...|.|.|+.|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998876
No 364
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.82 E-value=0.056 Score=48.73 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+++|+|..|+|||||++.+....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999999887
No 365
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.82 E-value=0.14 Score=48.20 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....+|.|.|+.|+||||+|+.+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998766
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.79 E-value=0.073 Score=51.98 Aligned_cols=26 Identities=27% Similarity=0.601 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+++|+|.+|+||||+++.+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999999877
No 367
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.70 E-value=0.074 Score=48.91 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....+|.|.|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998876
No 368
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.70 E-value=0.27 Score=59.62 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=57.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc---CCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW---KNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (626)
..+++-|+|++|+|||+||.++.... ...=..++|+++...++... ++.++.+.+.. ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 67899999999999999999998876 23334688898888776666 44555332211 122334444444
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 006902 255 LRRLG-EKRFVLLLDDIW 271 (626)
Q Consensus 255 ~~~l~-~k~~llvlDdv~ 271 (626)
....+ .+.-++|+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 44432 567799999984
No 369
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.68 E-value=0.072 Score=48.19 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.66 E-value=0.085 Score=46.99 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|.|+.|+||||+++.+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999998876
No 371
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.62 E-value=0.067 Score=49.81 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999998765
No 372
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.54 E-value=0.061 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|+|+.|.||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999876
No 373
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.53 E-value=0.16 Score=50.94 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=29.3
Q ss_pred HHHHHHHHh--cCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 167 LEQVWRCLA--EESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 167 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+.+.+. .....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 3467899999999999999999998776
No 374
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.36 E-value=0.075 Score=49.98 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.. .+++|+|..|.|||||.+.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 36 899999999999999999998754
No 375
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.36 E-value=0.071 Score=49.19 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997755
No 376
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.34 E-value=0.075 Score=49.30 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999877
No 377
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.31 E-value=0.07 Score=50.39 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
.-.+++|+|..|.|||||++.+...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999843
No 378
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.29 E-value=0.093 Score=46.51 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++.|+|..|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999876
No 379
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.27 E-value=0.22 Score=48.43 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHh
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKI 235 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l 235 (626)
.-.+++|+|.+|+|||||++.+.... ..... ..++|+.... ...++.+.+....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~-~~~~G-~~v~~~~~e~--~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW-GTAMG-KKVGLAMLEE--SVEETAEDLIGLH 87 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH-HHTSC-CCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHHcC-CeEEEEeCcC--CHHHHHHHHHHHH
Confidence 56799999999999999999998877 32211 1466665443 3455555554443
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.26 E-value=0.085 Score=48.03 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998753
No 381
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.26 E-value=0.15 Score=49.97 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....+|+|+|..|.|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 355799999999999999999998866
No 382
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.23 E-value=0.11 Score=56.26 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.+..++.+...+..+ ..+.|+|..|+||||||+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 35799999888888887765 478999999999999999999865
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.15 E-value=0.096 Score=51.13 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+++|+|..|+||||+++.+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999887
No 384
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.11 E-value=0.074 Score=49.84 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999987644
No 385
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.09 E-value=0.093 Score=47.91 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998876
No 386
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.07 E-value=0.087 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCchHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINN 201 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~ 201 (626)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 387
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.07 E-value=0.27 Score=48.37 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+++|+|.+|+||||++..+....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 388
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.05 E-value=0.095 Score=48.83 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|.|+.|.||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 389
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.03 E-value=0.086 Score=51.98 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|+|.|+.|+||||||+.+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998866
No 390
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.01 E-value=0.056 Score=50.52 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=16.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHH-HHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRIN-NKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~-~~~ 203 (626)
.-.+++|+|+.|+|||||++.+. ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999998 654
No 391
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.00 E-value=0.099 Score=47.80 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+|.|.|++|+||+|.|+.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999877
No 392
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.98 E-value=0.077 Score=49.33 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987654
No 393
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.89 E-value=0.17 Score=49.51 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=31.2
Q ss_pred cCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCc
Q 006902 176 EESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKE 221 (626)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 221 (626)
....++|+|+|-||+||||+|..+..... .. .. .++-|+....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La-~~-G~-~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFS-IL-GK-RVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH-HT-TC-CEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHH-HC-CC-eEEEEeCCCC
Confidence 34678999999999999999999988773 22 22 4666766543
No 394
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.86 E-value=0.57 Score=46.72 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHHhc-CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCe-EEEEEecCc
Q 006902 169 QVWRCLAE-ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDC-VIWVVVSKE 221 (626)
Q Consensus 169 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~ 221 (626)
++++.+.. ..-.-++|+|..|+|||+|++++.+... . .+-+. ++++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~-~-~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA-E-NHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH-H-HCTTSEEEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHh-h-cCCCeEEEEEEeccC
Confidence 45666654 4567889999999999999999998762 1 22232 355555544
No 395
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.85 E-value=0.1 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..|.|.|+.|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 396
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.84 E-value=0.1 Score=48.04 Aligned_cols=23 Identities=35% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998866
No 397
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.81 E-value=0.068 Score=49.01 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
.-.+++|+|..|.|||||++.+...
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999875
No 398
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.79 E-value=0.22 Score=44.99 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcC-CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 165 SQLEQVWRCLAEE-SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 165 ~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-+..+..++.+- ....+.|+|++|+||||+|..+.+..
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3355666666542 23468999999999999999998876
No 399
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.75 E-value=0.097 Score=47.17 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988754
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.75 E-value=0.1 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998866
No 401
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.74 E-value=0.092 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.676 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRIN 200 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~ 200 (626)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999997
No 402
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.64 E-value=0.09 Score=49.34 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998755
No 403
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.62 E-value=0.095 Score=49.63 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
.-.+++|+|..|.|||||++.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999884
No 404
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.54 E-value=0.13 Score=49.01 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45788899999999999999998876
No 405
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.52 E-value=0.092 Score=50.10 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55789999999999999999987654
No 406
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.48 E-value=0.12 Score=48.41 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...|.|.|+.|+||||+|+.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999877
No 407
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.47 E-value=0.094 Score=50.38 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45789999999999999999987644
No 408
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.42 E-value=0.2 Score=48.28 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccC--------CCCeEEEEEecCc
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQN--------NFDCVIWVVVSKE 221 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------~F~~~~wv~~s~~ 221 (626)
.-.++.|+|.+|+|||||+..+.... .... .-..+++++....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~-~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI-AGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH-hcCCCcCCCccCCCccEEEEECCCC
Confidence 45789999999999999999998765 2110 0234667776554
No 409
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.39 E-value=0.088 Score=49.51 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999988754
No 410
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.36 E-value=0.1 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
.-.+++|+|..|.|||||++.+..-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5578999999999999999999884
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.29 E-value=0.13 Score=51.28 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+++|+|..|+||||+++.+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999999887
No 412
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.28 E-value=0.077 Score=48.88 Aligned_cols=26 Identities=35% Similarity=0.637 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999988754
No 413
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.25 E-value=0.1 Score=49.74 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 56789999999999999999988654
No 414
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.24 E-value=0.1 Score=49.91 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 55789999999999999999988644
No 415
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.20 E-value=0.1 Score=49.57 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999987654
No 416
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.20 E-value=0.11 Score=48.55 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 417
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.19 E-value=0.098 Score=49.30 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999988654
No 418
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.14 E-value=0.11 Score=47.01 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
..|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 419
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.10 E-value=0.11 Score=49.08 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987654
No 420
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.09 E-value=0.19 Score=47.19 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=32.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQED 230 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~ 230 (626)
.-.++.|.|.+|+||||||.++..... ..=..++|++.... ..++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEESSSC--HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccCC--HHHHHHH
Confidence 457899999999999999988876552 12235777775543 3444433
No 421
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.07 E-value=0.082 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 422
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.06 E-value=0.098 Score=49.66 Aligned_cols=26 Identities=42% Similarity=0.581 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998754
No 423
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.05 E-value=0.13 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|.|+|+.|+||||||+.+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998865
No 424
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.04 E-value=0.26 Score=45.87 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999988
No 425
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.95 E-value=0.1 Score=50.06 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998754
No 426
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.92 E-value=0.15 Score=48.59 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=58.6
Q ss_pred cCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC-ccCHHHHHHHHHH--HhCCCCCccCCcCHHHHHH
Q 006902 176 EESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK-ELRLEKIQEDIGK--KIGLFDDSWKNKSFEEKAV 252 (626)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~l~~~i~~--~l~~~~~~~~~~~~~~~~~ 252 (626)
-..-.+++|+|+.|.|||||++.+.... .. .+...+++.-.. .+-.... ..+.. .++. .... ...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~-~~--~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl-----~~~~---l~~ 89 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI-NQ--TKSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DTKS---FAD 89 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH-HH--HCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TBSC---HHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC-CC--CCCCEEEEcCCcceeecCCc-ceeeeHHHhCC-----CHHH---HHH
Confidence 3466799999999999999999998876 22 112333332110 0000000 00000 0000 1112 234
Q ss_pred HHHHHhCCCcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHHh
Q 006902 253 DILRRLGEKRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVCG 304 (626)
Q Consensus 253 ~l~~~l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va~ 304 (626)
.+...+..++=++++|+..+......+... ...|.-|++||...++..
T Consensus 90 ~la~aL~~~p~illlDEp~D~~~~~~~l~~----~~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 90 ALRAALREDPDVIFVGEMRDLETVETALRA----AETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHHHHHHCCSEEEESCCCSHHHHHHHHHH----HHTTCEEEEEECCSSHHH
T ss_pred HHHHHHhhCCCEEEeCCCCCHHHHHHHHHH----HccCCEEEEEeCcchHHH
Confidence 555666556668888998754333222111 123667888888766544
No 427
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.91 E-value=0.12 Score=49.33 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999998754
No 428
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.85 E-value=0.12 Score=45.09 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
..|+|+|.+|+|||||...+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 429
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.82 E-value=0.11 Score=49.17 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999988754
No 430
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.74 E-value=0.11 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999987654
No 431
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.73 E-value=0.15 Score=46.37 Aligned_cols=38 Identities=24% Similarity=0.155 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 166 QLEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 166 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+.+.+.......--|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred chhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 34444444444556678999999999999998888643
No 432
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.73 E-value=0.42 Score=48.82 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 169 QVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 169 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+.+. ......+++|+|..|.||||+++.+....
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34444 44567899999999999999999999876
No 433
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.69 E-value=0.46 Score=44.33 Aligned_cols=37 Identities=27% Similarity=0.456 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEE
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWV 216 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 216 (626)
....|.|.|..|+||||+++.+.... . ...+..+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l-~-~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL-Q-QNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH-H-HTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H-hcCCCeeeee
Confidence 34689999999999999999999987 3 3456533433
No 434
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.69 E-value=0.14 Score=49.91 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..-.+++|+|..|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 356799999999999999999998754
No 435
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.67 E-value=0.11 Score=49.21 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 436
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.65 E-value=0.11 Score=49.99 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 55789999999999999999988654
No 437
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.65 E-value=0.24 Score=44.21 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCeEEEEEcCCCchHHHHHHHHHHH
Q 006902 167 LEQVWRCLAEESAGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 167 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
...+.+ +......-|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 45566778999999999999999998854
No 438
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.64 E-value=0.36 Score=47.97 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=34.1
Q ss_pred HhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCH
Q 006902 174 LAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRL 224 (626)
Q Consensus 174 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 224 (626)
+.....+++.+.|.||+||||+|..+.... .....=..++-|+.....++
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l-a~~~~g~~vllid~D~~~~l 62 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL-ALAQPNEQFLLISTDPAHNL 62 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSSCHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCCCCh
Confidence 334567899999999999999999998877 21022234666766644333
No 439
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.63 E-value=0.3 Score=46.56 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=28.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK 220 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 220 (626)
++|+|.|-||+||||+|..+.... . +.. ..++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l-a-~~G-~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL-H-AMG-KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH-H-TTT-CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH-H-HCC-CcEEEEcCCC
Confidence 578889999999999999999887 2 222 2466666553
No 440
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.61 E-value=0.19 Score=55.65 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=56.8
Q ss_pred CcccchHHHHHHHHHHHhc-------------CCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCH
Q 006902 158 PTIVGLQSQLEQVWRCLAE-------------ESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRL 224 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 224 (626)
.++.|.++.++.+.+.+.- ...+-+-++|++|.|||.+|+++.+.. .. -++.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~-----~f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA-----NFISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TC-----EEEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CC-----ceEEec----c
Confidence 4567888888888776642 123457899999999999999999976 22 223332 2
Q ss_pred HHHHHHHHHHhCCCCCccCCcCHHHHHHHHHHHhCCCcEEEEEeCCC
Q 006902 225 EKIQEDIGKKIGLFDDSWKNKSFEEKAVDILRRLGEKRFVLLLDDIW 271 (626)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~llvlDdv~ 271 (626)
.+++ .. +-......+...+...-+..+++|.+|++.
T Consensus 545 ~~l~----s~-------~vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 545 PELL----TM-------WFGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp HHHH----TT-------TCSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred chhh----cc-------ccchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 2222 11 122333333333333445678999999984
No 441
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.55 E-value=0.14 Score=49.79 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|+|+.|+||||||..+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3688999999999999999997654
No 442
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.53 E-value=0.32 Score=54.30 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHHhcC---------CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..++|.++.++.+...+... ....+-++|.+|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 56789999998888877531 23478999999999999999999876
No 443
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.53 E-value=0.13 Score=46.02 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
-|.|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 444
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.51 E-value=0.18 Score=47.22 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 445
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.51 E-value=0.48 Score=43.43 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=32.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGK 233 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~ 233 (626)
..|.|.|..|+||||+++.+.... . ...+..+.+..-.....+-+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l-~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL-E-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH-H-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-H-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999987 3 334433333322222223344444443
No 446
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.48 E-value=0.17 Score=43.59 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
.-|.++|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998764
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.46 E-value=0.15 Score=49.73 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 448
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.46 E-value=0.27 Score=52.13 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=30.4
Q ss_pred cchHHHHHHHHHHH--hcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 161 VGLQSQLEQVWRCL--AEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 161 vGr~~~~~~l~~~L--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.+.+....+.... .-....++.|+|+.|.|||||++.+....
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 34444334444333 12356789999999999999999999887
No 449
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.45 E-value=0.15 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999876
No 450
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.34 E-value=0.29 Score=45.03 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=26.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK 220 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 220 (626)
.|.+.|.||+||||+|..+..... ...++. ..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V-~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL--RQGVRV-MAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH--HTTCCE-EEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH--HCCCCE-EEEEeCC
Confidence 477889999999999998888772 334443 4444443
No 451
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.31 E-value=0.15 Score=44.06 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999987653
No 452
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.24 E-value=0.55 Score=42.44 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.|+|-|.-|+||||.++.+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47788999999999999999988
No 453
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.21 E-value=0.32 Score=43.53 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....|.|+|.+|+|||||...+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999987643
No 454
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.12 E-value=0.47 Score=46.88 Aligned_cols=49 Identities=27% Similarity=0.274 Sum_probs=34.4
Q ss_pred HhcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHH
Q 006902 174 LAEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLE 225 (626)
Q Consensus 174 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 225 (626)
+.....+++.+.|-||+||||+|..+.... ...=..++-|+.....++.
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l---a~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQL---AKVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHH---TTSSSCEEEEECCSSCHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHH---HhCCCcEEEEECCCCCChh
Confidence 334456788888999999999999998877 2322356777766544433
No 455
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.10 E-value=0.28 Score=51.29 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=34.4
Q ss_pred cccchHHHHHHHHHHH--hcCCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 159 TIVGLQSQLEQVWRCL--AEESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+.|.+..+.+.+.. ......+|.+.|+.|.||||+|+.+....
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3456666556666655 23456789999999999999999999988
No 456
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.09 E-value=0.13 Score=50.44 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|+|+.|+||||||..+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999887654
No 457
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.08 E-value=0.094 Score=56.52 Aligned_cols=46 Identities=24% Similarity=0.196 Sum_probs=33.7
Q ss_pred CcccchHHHHHHHHHHHhcCCCe-----------EEEEEcCCCchHHHHHHHHHHHH
Q 006902 158 PTIVGLQSQLEQVWRCLAEESAG-----------IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
+.++|.+..+..+.-.|..+..+ -+-++|.+|+|||+||+.+.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 55778887766665555544222 47899999999999999887654
No 458
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.06 E-value=0.16 Score=45.34 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
..|+++|.+|+|||||...+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 459
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.06 E-value=0.17 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
--|.|+|.+|+|||||...+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999988643
No 460
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.03 E-value=0.14 Score=49.91 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 56789999999999999999987644
No 461
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.02 E-value=1.2 Score=46.96 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKK 234 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~ 234 (626)
.-.++.|.|.+|+||||+|.++.... .. .+=..++|++... +.+++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~-a~-~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW-GT-AMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH-TT-TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH-HH-hcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 45788999999999999999998876 22 1123577776644 466777666543
No 462
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.99 E-value=0.42 Score=44.86 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=30.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEK 226 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 226 (626)
.|+|.|-||+||||+|..+..... . .. ..++-|+.....+...
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la-~-~g-~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMA-S-DY-DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHT-T-TC-SCEEEEEECTTSCHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHH-H-CC-CeEEEEeCCCCcChHH
Confidence 367799999999999999998882 2 22 4567777665444443
No 463
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.99 E-value=0.66 Score=56.32 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=58.7
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCcc---CCcCHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDSW---KNKSFEEKAVDI 254 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (626)
.-+++-|.|.+|+||||||.++..... ..=..++|++....++... ++.++.+.+.. +..+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 567999999999999999999988772 2224688998877766542 56666543221 233555555555
Q ss_pred HHHh-CCCcEEEEEeCCCC
Q 006902 255 LRRL-GEKRFVLLLDDIWE 272 (626)
Q Consensus 255 ~~~l-~~k~~llvlDdv~~ 272 (626)
.... ..+.-++|+|-+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 5443 24556899998753
No 464
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.98 E-value=0.19 Score=56.83 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=37.5
Q ss_pred cccchHHHHHHHHHHHhcC---------CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 159 TIVGLQSQLEQVWRCLAEE---------SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.++|.+..++.+...+... ....+.|+|..|+|||++|+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999988888877531 23578999999999999999999877
No 465
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.93 E-value=0.17 Score=45.27 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
--|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999998653
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.85 E-value=0.2 Score=48.56 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
..+|.|+|+.|+||||||..+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 467
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.83 E-value=0.35 Score=48.64 Aligned_cols=27 Identities=22% Similarity=0.069 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....+++|+|+.|.|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356799999999999999999999765
No 468
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.78 E-value=0.15 Score=48.69 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
-.+++|+|..|.|||||.+.+..-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998753
No 469
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.77 E-value=0.12 Score=48.11 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
...+|+|.|..|.||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999988653
No 470
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.70 E-value=0.26 Score=50.23 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=26.3
Q ss_pred HHHHHHhc--CCCeEEEEEcCCCchHHHHHHHHHHH
Q 006902 169 QVWRCLAE--ESAGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 169 ~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
.+.+.|.. ....+++|+|..|+|||||.+.+...
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 34444432 35679999999999999999999883
No 471
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.65 E-value=2.9 Score=41.85 Aligned_cols=232 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred cccccchHHhhhcccchhcccCCCCccccchhhhcCCCcccEEEccCCCCCcccCCCCcccccCCccchhHHhhccCCCc
Q 006902 322 YIQELPEELKLLVNLKCLNLRGTGQLNKIPRQLISKFSRLRVLRMLGTGPFSFDEAPEDSVLFGGGEVLIQELLGLKYLE 401 (626)
Q Consensus 322 ~i~~LP~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 401 (626)
+++.++...-...+|+.+.+..+ +..+... ...-.+|..+.+..+- ..-.......+.++.
T Consensus 101 ~l~~I~~~aF~~~~L~~i~lp~~--~~~i~~~-~F~~~~l~~~~~~~~v----------------~~i~~~~f~~~~~l~ 161 (379)
T 4h09_A 101 RVKKFGDYVFQGTDLDDFEFPGA--TTEIGNY-IFYNSSVKRIVIPKSV----------------TTIKDGIGYKAENLE 161 (379)
T ss_dssp TCCEECTTTTTTCCCSEEECCTT--CCEECTT-TTTTCCCCEEEECTTC----------------CEECSCTTTTCTTCC
T ss_pred eeeEeccceeccCCcccccCCCc--ccccccc-ccccceeeeeecccee----------------eccccchhccccccc
Q ss_pred eEE--------EEEechhhHHHHhhccccccceeEEEEeccCCCccccccccccccccccceeecccCCcceEeeccccc
Q 006902 402 VLE--------LTLGSYHALQILLSSNKLKSCIRSLFLWLAGDATSIVDATAFADLNHLNELWIYRGFELEELKIDYTEI 473 (626)
Q Consensus 402 ~L~--------i~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~ 473 (626)
... +.......-.................+......... ....+....+|+.+.+. ..+..+....+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~f~~~~~l~~i~~~--~~~~~i~~~~f~- 237 (379)
T 4h09_A 162 KIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTV-TAYGFSYGKNLKKITIT--SGVTTLGDGAFY- 237 (379)
T ss_dssp EEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEE-CTTTTTTCSSCSEEECC--TTCCEECTTTTT-
T ss_pred ccccccccceeecccceecccccceeccccccccccccccccceeEE-eecccccccccceeeec--cceeEEcccccc-
Q ss_pred cccccCccccCccCEEEEeCCCCCccccc--cccCCCccEEEEeccCccccccccCccccccccCCCCCcCCccceeecC
Q 006902 474 VRKRREPFVFRSLHHVTIYSCTKLKDSTF--LVFAPNLKSLTLFDCGAMEEIISVGKIAETPEMMGHISPFENLQMLHLS 551 (626)
Q Consensus 474 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~L~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~~~~fp~L~~L~l~ 551 (626)
.+.+|+.+.+.. .++.+.. +.++.+|+.+.+.. .+..++.. ....+++|+.+.+.
T Consensus 238 --------~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~-----------aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 238 --------GMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYL-----------LCSGCSNLTKVVMD 294 (379)
T ss_dssp --------TCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTT-----------TTTTCTTCCEEEEC
T ss_pred --------CCccceEEEcCC--CccEeCccccceeehhccccccc--cceecccc-----------cccccccccccccc
Q ss_pred CccccccccCC-CCCCCCccEEEecCCCCCCCCCCCCCcCcCcceEEecccc
Q 006902 552 YLPILKSIYWK-PLPFTHLKEMEVSGCNQLEKHPLDSNSAKERKVVIRGDTQ 602 (626)
Q Consensus 552 ~~~~l~~i~~~-~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~l~~~~~~~~ 602 (626)
+ ..++.|... +..+.+|+++.+- .+++.++..-......|+.+..|..
T Consensus 295 ~-~~i~~I~~~aF~~c~~L~~i~lp--~~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 295 N-SAIETLEPRVFMDCVKLSSVTLP--TALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp C-TTCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCCCCCCTT
T ss_pred c-cccceehhhhhcCCCCCCEEEcC--ccccEEHHHHhhCCCCCCEEEECCc
No 472
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.64 E-value=0.42 Score=48.79 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=53.4
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCC----eEEEEEecCcc-CHHHHHHHHHHHhCCCCC----ccCCcCHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFD----CVIWVVVSKEL-RLEKIQEDIGKKIGLFDD----SWKNKSFE 248 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~----~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~ 248 (626)
+-.-++|+|..|+|||+|+.++.+.. ..+-+ .++++-+.+.. ...++.+++.+.=..... ...++...
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~---~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~ 226 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQA---TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAI 226 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHC---BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHH---HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHH
Confidence 34457899999999999999998876 22223 56677666643 455666665443101000 00111211
Q ss_pred H------HHHHHHHHh---CCCcEEEEEeCCCC
Q 006902 249 E------KAVDILRRL---GEKRFVLLLDDIWE 272 (626)
Q Consensus 249 ~------~~~~l~~~l---~~k~~llvlDdv~~ 272 (626)
. .+..+.+++ +++..|+++||+..
T Consensus 227 ~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 227 ERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1 122344444 37899999999843
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.59 E-value=0.23 Score=46.60 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...|.|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998876
No 474
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.54 E-value=0.19 Score=44.46 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=24.8
Q ss_pred HHHHHHhc-CCCeEEEEEcCCCchHHHHHHHHHH
Q 006902 169 QVWRCLAE-ESAGIIGLYGMGGVGKTTLLTRINN 201 (626)
Q Consensus 169 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~ 201 (626)
++.+.+.. ....-|.|+|.+|+|||||...+.+
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34444444 5667789999999999999977754
No 475
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.53 E-value=0.63 Score=55.69 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=0.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCc---cCCcCHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIGLFDDS---WKNKSFEEKAVDILR 256 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~ 256 (626)
+++-|.|.+|+||||||.++.... ...=..++|++....++... ++.++.+.+. ....+.++....+..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~---~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH---HHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Q ss_pred Hh-CCCcEEEEEeCC
Q 006902 257 RL-GEKRFVLLLDDI 270 (626)
Q Consensus 257 ~l-~~k~~llvlDdv 270 (626)
.. ..+.-++|+|-+
T Consensus 456 lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHhcCCCEEEECCH
No 476
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.48 E-value=0.21 Score=43.28 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 006902 182 IGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 182 i~I~G~gGiGKTtLa~~v~~~~ 203 (626)
|.|+|.+|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999987654
No 477
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.40 E-value=0.2 Score=43.42 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-|.|+|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358899999999999999988653
No 478
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.38 E-value=0.26 Score=43.71 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCchHHHHHHHHHHH
Q 006902 177 ESAGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999888654
No 479
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.36 E-value=0.2 Score=43.43 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
-|.|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988743
No 480
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.36 E-value=0.69 Score=42.36 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeE
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCV 213 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~ 213 (626)
...|.|.|+.|+||||+++.+..... ...+..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCcc
Confidence 46789999999999999999998873 3445543
No 481
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.35 E-value=0.23 Score=48.09 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=28.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSK 220 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 220 (626)
++|+|.|-||+||||+|..+..... . ... .++-|+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La-~-~G~-rVlliD~D~ 40 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALA-E-MGK-KVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH-H-TTC-CEEEEEECS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHH-H-CCC-eEEEEecCC
Confidence 6888899999999999999988772 2 222 456666553
No 482
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.34 E-value=0.19 Score=50.05 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45789999999999999999998754
No 483
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.28 E-value=0.19 Score=48.67 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 55789999999999999999998755
No 484
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.27 E-value=0.17 Score=44.37 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 458999999999999999887644
No 485
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.25 E-value=0.24 Score=49.95 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+|.|.|+.|+||||||..+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998876
No 486
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.23 E-value=0.2 Score=44.52 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
--|.|+|.+|+|||||+..+.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988753
No 487
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.22 E-value=0.19 Score=44.34 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 488
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.17 E-value=0.2 Score=49.97 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|..|.|||||++.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 55789999999999999999988654
No 489
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.12 E-value=0.21 Score=44.58 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCchHHHHHHHHHHH
Q 006902 179 AGIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
.--|.|+|.+|+|||||+..+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999887764
No 490
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.08 E-value=0.36 Score=48.18 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=65.2
Q ss_pred hcCCCeEEEEEcCCCchHHHHHHHHHHHHhhccCCCCeEEEEEecCccCHHHHHHHHHHHhC-CCCCccCCcCHHHHHHH
Q 006902 175 AEESAGIIGLYGMGGVGKTTLLTRINNKFLENQNNFDCVIWVVVSKELRLEKIQEDIGKKIG-LFDDSWKNKSFEEKAVD 253 (626)
Q Consensus 175 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~l~~~i~~~l~-~~~~~~~~~~~~~~~~~ 253 (626)
......+++|+|+.|.||||+.+.+.... .... =..++.+.-.-.+.... ... ..... ...........
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~-~~~~-~~~i~t~ed~~e~~~~~-------~~~~v~q~~-~~~~~~~~~~~ 188 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYL-NNTK-YHHILTIEDPIEFVHES-------KKCLVNQRE-VHRDTLGFSEA 188 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHH-HHHC-CCEEEEEESSCCSCCCC-------SSSEEEEEE-BTTTBSCHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcc-cCCC-CcEEEEccCcHHhhhhc-------cccceeeee-eccccCCHHHH
Confidence 34455699999999999999999998876 2111 11222222111110000 000 00000 00111233457
Q ss_pred HHHHhCCCcEEEEEeCCCCccccccccCCCCCCCCCCcEEEEecCChHHHhh
Q 006902 254 ILRRLGEKRFVLLLDDIWERVDLTEVGVPLPSPQNTTSKVVFTTRFIDVCGS 305 (626)
Q Consensus 254 l~~~l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~s~iivTtr~~~va~~ 305 (626)
+...|...+=++++|+..+.+.+..+... ...|..|++|+...+.+..
T Consensus 189 La~aL~~~PdvillDEp~d~e~~~~~~~~----~~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMRDLETIRLALTA----AETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp HHHHTTSCCSEEEESCCCSHHHHHHHHHH----HHTTCEEEEEESCSSHHHH
T ss_pred HHHHhhhCcCEEecCCCCCHHHHHHHHHH----HhcCCEEEEEEccChHHHH
Confidence 88888888889999999876555443222 1236668999987766643
No 491
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.06 E-value=0.18 Score=51.71 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
...+|.|+|++|+||||+|+.+....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 56899999999999999999987754
No 492
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.03 E-value=0.22 Score=43.44 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999988764
No 493
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.03 E-value=0.32 Score=43.96 Aligned_cols=32 Identities=31% Similarity=0.501 Sum_probs=23.5
Q ss_pred HHHHH-hcCCCeEEEEEcCCCchHHHHHHHHHH
Q 006902 170 VWRCL-AEESAGIIGLYGMGGVGKTTLLTRINN 201 (626)
Q Consensus 170 l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 201 (626)
+.+.+ ...+...|.++|.+|+|||||...+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34444 233445689999999999999998864
No 494
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.02 E-value=0.22 Score=44.72 Aligned_cols=24 Identities=46% Similarity=0.386 Sum_probs=20.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
--|.|+|.+|+|||||++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 458899999999999998776654
No 495
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.99 E-value=0.24 Score=45.85 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
....++|.|++|+||||+|+.+...+
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998877
No 496
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.89 E-value=0.22 Score=49.63 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCchHHHHHHHHHHHH
Q 006902 178 SAGIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45789999999999999999998654
No 497
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.87 E-value=0.23 Score=42.99 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
-|.|+|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999998887643
No 498
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.87 E-value=0.23 Score=44.16 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 006902 180 GIIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
.+..|+|..|.|||||+.+++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999988754
No 499
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.86 E-value=0.2 Score=43.62 Aligned_cols=22 Identities=36% Similarity=0.774 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNK 202 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~ 202 (626)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
No 500
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.83 E-value=0.23 Score=43.15 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 006902 181 IIGLYGMGGVGKTTLLTRINNKF 203 (626)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (626)
-|.|+|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987654
Done!