BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006903
(626 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 16/274 (5%)
Query: 353 LLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED--FKNRMQKIDHVKHPNVLPPLAYY 410
+LGRG G +Y+ L DG ++AVKRL++ + F+ ++ I H N+L +
Sbjct: 37 ILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 96
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQS-FDWGSRLRVAACVAKALALIHEELREDGI 469
+ E+LLVY Y NGS+ + L Q DW R R+A A+ LA +H+ + I
Sbjct: 97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHC-DPKI 155
Query: 470 AHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCSTIKA--- 526
H E + ++GL ++ + I I+ + ST K+
Sbjct: 156 IHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAPEYLSTGKSSEK 215
Query: 527 -DVYGFGVILLELLTG-------KLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAAS 578
DV+G+GV+LLEL+TG +L ++ L WV +++E+ +E +V +
Sbjct: 216 TDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEK-KLEALVDVDLQGNYK 274
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
+E + +L+QVAL C SP ERP M++V M+
Sbjct: 275 DEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 134/273 (49%), Gaps = 16/273 (5%)
Query: 353 LLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED--FKNRMQKIDHVKHPNVLPPLAYY 410
+LGRG G +Y+ L DG ++AVKRL++ + F+ ++ I H N+L +
Sbjct: 45 ILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVEMISMAVHRNLLRLRGFC 104
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQS-FDWGSRLRVAACVAKALALIHEELREDGI 469
+ E+LLVY Y NGS+ + L Q DW R R+A A+ LA +H+ + I
Sbjct: 105 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHC-DPKI 163
Query: 470 AHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCSTIKA--- 526
H E + ++GL ++ + I I+ + ST K+
Sbjct: 164 IHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAPEYLSTGKSSEK 223
Query: 527 -DVYGFGVILLELLTG-------KLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAAS 578
DV+G+GV+LLEL+TG +L ++ L WV +++E+ +E +V +
Sbjct: 224 TDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEK-KLEALVDVDLQGNYK 282
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMIN 611
+E + +L+QVAL C SP ERP M++V M+
Sbjct: 283 DEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 315
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 124/274 (45%), Gaps = 33/274 (12%)
Query: 353 LLGRGKHGSLYRVVLDDGLMLAVKR-LRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYC 411
L+G G G +Y+ VL DG +A+KR + S E+F+ ++ + +HP+++ + +
Sbjct: 46 LIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCD 105
Query: 412 SKQEKLLVYEYQPNGSLFNLLHGSE-NGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+ E +L+Y+Y NG+L L+GS+ S W RL + A+ L +H I
Sbjct: 106 ERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR----AII 161
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENH-DQSFLAQTSSLKINDISNQMCS----TIK 525
H P I+++G+ DQ+ L + I + T K
Sbjct: 162 HRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYIDPEYFIKGRLTEK 221
Query: 526 ADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-----EWTVEV-----FDEVL--- 572
+DVY FGV+L E+L + + V S+ RE EW VE ++++
Sbjct: 222 SDVYSFGVVLFEVLCAR---------SAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPN 272
Query: 573 IAEAASEERMLKLLQVALRCINQSPNERPSMNQV 606
+A+ E + K A++C+ S +RPSM V
Sbjct: 273 LADKIRPESLRKFGDTAVKCLALSSEDRPSMGDV 306
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 124/274 (45%), Gaps = 33/274 (12%)
Query: 353 LLGRGKHGSLYRVVLDDGLMLAVKR-LRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYC 411
L+G G G +Y+ VL DG +A+KR + S E+F+ ++ + +HP+++ + +
Sbjct: 46 LIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCD 105
Query: 412 SKQEKLLVYEYQPNGSLFNLLHGSE-NGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+ E +L+Y+Y NG+L L+GS+ S W RL + A+ L +H I
Sbjct: 106 ERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR----AII 161
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLI-----VTENHDQSFLAQTSSLKINDISNQMCSTIK 525
H P I+++G+ + + H + T + + T K
Sbjct: 162 HRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYIDPEYFIKGRLTEK 221
Query: 526 ADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-----EWTVEV-----FDEVL--- 572
+DVY FGV+L E+L + + V S+ RE EW VE ++++
Sbjct: 222 SDVYSFGVVLFEVLCAR---------SAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPN 272
Query: 573 IAEAASEERMLKLLQVALRCINQSPNERPSMNQV 606
+A+ E + K A++C+ S +RPSM V
Sbjct: 273 LADKIRPESLRKFGDTAVKCLALSSEDRPSMGDV 306
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 8/165 (4%)
Query: 52 WNRSSDPCSGKWVGVTCDSRQKSVR--KIVLDGFNLSGILD-TTSVCKTQSLVVLSLEE- 107
W ++D C+ W+GV CD+ ++ R + L G NL +S+ L L +
Sbjct: 27 WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86
Query: 108 NNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSEL-PDLS 166
NN+ G + I+ QL +LY+ +SG +PD LS++ L LD S N S L P +S
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 167 RISGLLTFFAENNQLRGGIPEF--DFSNLL-QFNVSNNNLSGPVP 208
+ L+ + N++ G IP+ FS L +S N L+G +P
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 29/171 (16%)
Query: 85 LSGILDTTSVCKTQSLVVLSLEENNIAGTVSQEI-SNCKQLTHLYVGRNKLSGNLPDSLS 143
LSG L S+ +LV ++ + N I+G + S K T + + RN+L+G +P + +
Sbjct: 137 LSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Query: 144 KLN-----------------------NLKRLDISNNNFSSELPDLSRISGLLTFFAENNQ 180
LN N +++ ++ N+ + +L + L NN+
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255
Query: 181 LRGGIPE--FDFSNLLQFNVSNNNLSGPVP--GVNGRLGADSFSGNPGLCG 227
+ G +P+ L NVS NNL G +P G R +++ N LCG
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 121/276 (43%), Gaps = 26/276 (9%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDW-SISSEDFKNRMQK----IDHVKHPNVLPPLA 408
+G G G +Y+ +++ +AVK+L I++E+ K + + + +H N++ L
Sbjct: 39 MGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
+ + LVY Y PNGSL + L + W R ++A A + +HE
Sbjct: 98 FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH--- 154
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLI-VTENHDQSFL-----AQTSSLKINDISNQMCS 522
H IS++GL +E Q+ + T+ + + ++
Sbjct: 155 -IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPEALRGEI-- 211
Query: 523 TIKADVYGFGVILLELLTGKLVQNNG----FNLATWVHSVVREEWTVEVFDEVL-IAEAA 577
T K+D+Y FGV+LLE++TG + L E+ + D+ + A++
Sbjct: 212 TPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADST 271
Query: 578 SEERMLKLLQVALRCINQSPNERPSMNQVAVMINNI 613
S E M VA +C+++ N+RP + +V ++ +
Sbjct: 272 SVEAM---YSVASQCLHEKKNKRPDIKKVQQLLQEM 304
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 121/276 (43%), Gaps = 26/276 (9%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDW-SISSEDFKNRMQK----IDHVKHPNVLPPLA 408
+G G G +Y+ +++ +AVK+L I++E+ K + + + +H N++ L
Sbjct: 39 MGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
+ + LVY Y PNGSL + L + W R ++A A + +HE
Sbjct: 98 FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH--- 154
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLI-VTENHDQSFL-----AQTSSLKINDISNQMCS 522
H IS++GL +E Q+ + T+ + + ++
Sbjct: 155 -IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRGEI-- 211
Query: 523 TIKADVYGFGVILLELLTGKLVQNNG----FNLATWVHSVVREEWTVEVFDEVL-IAEAA 577
T K+D+Y FGV+LLE++TG + L E+ + D+ + A++
Sbjct: 212 TPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADST 271
Query: 578 SEERMLKLLQVALRCINQSPNERPSMNQVAVMINNI 613
S E M VA +C+++ N+RP + +V ++ +
Sbjct: 272 SVEAM---YSVASQCLHEKKNKRPDIKKVQQLLQEM 304
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 28/277 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDW-SISSEDFKNRMQK----IDHVKHPNVLPPLA 408
+G G G +Y+ +++ +AVK+L I++E+ K + + + +H N++ L
Sbjct: 33 MGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 91
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
+ + LVY Y PNGSL + L + W R ++A A + +HE
Sbjct: 92 FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH--- 148
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS------ 522
H IS++GL + F +I + M
Sbjct: 149 -IHRDIKSANILLDEAFTAKISDFGL---ARASEKFAQXVMXXRIVGTTAYMAPEALRGE 204
Query: 523 -TIKADVYGFGVILLELLTGKLVQNNG----FNLATWVHSVVREEWTVEVFDEVL-IAEA 576
T K+D+Y FGV+LLE++TG + L E+ + D+ + A++
Sbjct: 205 ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADS 264
Query: 577 ASEERMLKLLQVALRCINQSPNERPSMNQVAVMINNI 613
S E M VA +C+++ N+RP + +V ++ +
Sbjct: 265 TSVEAM---YSVASQCLHEKKNKRPDIKKVQQLLQEM 298
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 74 SVRKIVLDGFNLSG-ILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRN 132
S+ + L N SG IL +L L L+ N G + +SNC +L L++ N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 133 KLSGNLPDSLSKLNNLKRLDISNNNFSSELP-DLSRISGLLTFFAENNQLRGGIPE--FD 189
LSG +P SL L+ L+ L + N E+P +L + L T + N L G IP +
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 190 FSNLLQFNVSNNNLSGPVPGVNGR--------LGADSFSGN 222
+NL ++SNN L+G +P GR L +SFSGN
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 17/123 (13%)
Query: 96 KTQSLVVLSLEENNIAGT--VSQEISN-CKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLD 152
K SL VL L N+I+G V +S+ C +L HL + NK+SG++ +S+ NL+ LD
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLD 203
Query: 153 ISNNNFSSELPDLSRISGLLTFFAENNQLRGGIPEFDFSNLLQ-------FNVSNNNLSG 205
+S+NNFS+ +P L S L N+L G DFS + N+S+N G
Sbjct: 204 VSSNNFSTGIPFLGDCSALQHLDISGNKLSG-----DFSRAISTCTELKLLNISSNQFVG 258
Query: 206 PVP 208
P+P
Sbjct: 259 PIP 261
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 111 AGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSELPD-LSRIS 169
G S N + L + N LSG +P + + L L++ +N+ S +PD + +
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 170 GLLTFFAENNQLRGGIPEF--DFSNLLQFNVSNNNLSGPVP--GVNGRLGADSFSGNPGL 225
GL +N+L G IP+ + L + ++SNNNLSGP+P G F NPGL
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 737
Query: 226 CG 227
CG
Sbjct: 738 CG 739
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 100 LVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFS 159
L +L+L N+I+G++ E+ + + L L + NKL G +P ++S L L +D+SNNN S
Sbjct: 655 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
Query: 160 SELPDLSRISGLLTF----FAENNQLRG-GIPEFDFSN 192
+P++ + TF F N L G +P D SN
Sbjct: 715 GPIPEMGQFE---TFPPAKFLNNPGLCGYPLPRCDPSN 749
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 75 VRKIVLDGFNLSGILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKL 134
++ + + G +SG +D V + +L L + NN + + + +C L HL + NKL
Sbjct: 177 LKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKL 232
Query: 135 SGNLPDSLSKLNNLKRLDISNNNFSSELPDLSRISGLLTFFAENNQLRGGIPEF---DFS 191
SG+ ++S LK L+IS+N F +P L S AE N+ G IP+F
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE-NKFTGEIPDFLSGACD 291
Query: 192 NLLQFNVSNNNLSGPVPGVNG 212
L ++S N+ G VP G
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFG 312
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 98 QSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNN 157
++L L L+ N++ G + +SNC L + + N+L+G +P + +L NL L +SNN+
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 158 FSSELP-DLSRISGLLTFFAENNQLRGGIPEFDF 190
FS +P +L L+ N G IP F
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
Query: 98 QSLVVLSLEENNIAGTVSQEISN-CKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNN 156
+SL LSL EN G + +S C LT L + N G +P + L+ L +S+N
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 157 NFSSELP--DLSRISGLLTFFAENNQLRGGIPEFDFSN----LLQFNVSNNNLSGPV 207
NFS ELP L ++ GL N+ G +PE +N LL ++S+NN SGP+
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPI 381
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 94 VCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPD 140
V + L +L L N + G + Q +S LT + + N LSG +P+
Sbjct: 673 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 74 SVRKIVLDGFNLSG-ILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRN 132
S+ + L N SG IL +L L L+ N G + +SNC +L L++ N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 133 KLSGNLPDSLSKLNNLKRLDISNNNFSSELP-DLSRISGLLTFFAENNQLRGGIPE--FD 189
LSG +P SL L+ L+ L + N E+P +L + L T + N L G IP +
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 190 FSNLLQFNVSNNNLSGPVPGVNGR--------LGADSFSGN 222
+NL ++SNN L+G +P GR L +SFSGN
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 17/123 (13%)
Query: 96 KTQSLVVLSLEENNIAGT--VSQEISN-CKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLD 152
K SL VL L N+I+G V +S+ C +L HL + NK+SG++ +S+ NL+ LD
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLD 206
Query: 153 ISNNNFSSELPDLSRISGLLTFFAENNQLRGGIPEFDFSNLLQ-------FNVSNNNLSG 205
+S+NNFS+ +P L S L N+L G DFS + N+S+N G
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSG-----DFSRAISTCTELKLLNISSNQFVG 261
Query: 206 PVP 208
P+P
Sbjct: 262 PIP 264
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 111 AGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSELPD-LSRIS 169
G S N + L + N LSG +P + + L L++ +N+ S +PD + +
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 170 GLLTFFAENNQLRGGIPEF--DFSNLLQFNVSNNNLSGPVP--GVNGRLGADSFSGNPGL 225
GL +N+L G IP+ + L + ++SNNNLSGP+P G F NPGL
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740
Query: 226 CG 227
CG
Sbjct: 741 CG 742
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 100 LVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFS 159
L +L+L N+I+G++ E+ + + L L + NKL G +P ++S L L +D+SNNN S
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Query: 160 SELPDLSRISGLLTF----FAENNQLRG-GIPEFDFSN 192
+P++ + TF F N L G +P D SN
Sbjct: 718 GPIPEMGQFE---TFPPAKFLNNPGLCGYPLPRCDPSN 752
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 75 VRKIVLDGFNLSGILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKL 134
++ + + G +SG +D V + +L L + NN + + + +C L HL + NKL
Sbjct: 180 LKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKL 235
Query: 135 SGNLPDSLSKLNNLKRLDISNNNFSSELPDLSRISGLLTFFAENNQLRGGIPEF---DFS 191
SG+ ++S LK L+IS+N F +P L S AE N+ G IP+F
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE-NKFTGEIPDFLSGACD 294
Query: 192 NLLQFNVSNNNLSGPVPGVNG 212
L ++S N+ G VP G
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFG 315
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 98 QSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNN 157
++L L L+ N++ G + +SNC L + + N+L+G +P + +L NL L +SNN+
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 158 FSSELP-DLSRISGLLTFFAENNQLRGGIPEFDF 190
FS +P +L L+ N G IP F
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
Query: 98 QSLVVLSLEENNIAGTVSQEISN-CKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNN 156
+SL LSL EN G + +S C LT L + N G +P + L+ L +S+N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 157 NFSSELP--DLSRISGLLTFFAENNQLRGGIPEFDFSN----LLQFNVSNNNLSGPV 207
NFS ELP L ++ GL N+ G +PE +N LL ++S+NN SGP+
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPI 384
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 94 VCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPD 140
V + L +L L N + G + Q +S LT + + N LSG +P+
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 37/271 (13%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG G+ G ++ + +A+K L+ ++S E F Q + +KH + L L S+
Sbjct: 17 LGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPESFLEEAQIMKKLKH-DKLVQLYAVVSE 75
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L E G++ + + +AA VA +A I H +LR
Sbjct: 76 EPIYIVTEYMNKGSLLDFLKDGE-GRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSA 134
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G I+++GL ++ Q + I + + T
Sbjct: 135 NILVGNGLICK----------IADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFT 184
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVL--IAEAASEER 581
IK+DV+ FG++L EL+T V G N EV ++V ++
Sbjct: 185 IKSDVWSFGILLTELVTKGRVPYPGMN-------------NREVLEQVERGYRMPCPQDC 231
Query: 582 MLKLLQVALRCINQSPNERPSMNQVAVMINN 612
+ L ++ + C + P ERP+ + + +
Sbjct: 232 PISLHELMIHCWKKDPEERPTFEYLQSFLED 262
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 18/198 (9%)
Query: 355 GRGKHGSLYRVVLDDGLMLAVKRLRDW-SISSEDFKNRMQKIDHV----KHPNVLPPLAY 409
G G G +Y+ +++ +AVK+L I++E+ K + + V +H N++ L +
Sbjct: 31 GEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVELLGF 89
Query: 410 YCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGI 469
+ LVY Y PNGSL + L + W R ++A A + +HE
Sbjct: 90 SSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLHENHH---- 145
Query: 470 AHGXXXXXXXXXXXXMEPCISEYGLI-VTENHDQS-----FLAQTSSLKINDISNQMCST 523
H IS++GL +E Q + T+ + ++ T
Sbjct: 146 IHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRGEI--T 203
Query: 524 IKADVYGFGVILLELLTG 541
K+D+Y FGV+LLE++TG
Sbjct: 204 PKSDIYSFGVVLLEIITG 221
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 13/197 (6%)
Query: 352 ELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSE---DFKNRMQKIDHVKHPNVLPPLA 408
E +G G G+++R G +AVK L + +E +F + + ++HPN++ +
Sbjct: 43 EKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMG 101
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
+V EY GSL+ LLH S + D RL +A VAK + +H R
Sbjct: 102 AVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN--RNPP 159
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFL-----AQTSSLKINDISNQMCST 523
I H + ++GL + +FL A T ++ S
Sbjct: 160 IVHRNLKSPNLLVDKKYTVKVCDFGL--SRLKASTFLSSKSAAGTPEWMAPEVLRDEPSN 217
Query: 524 IKADVYGFGVILLELLT 540
K+DVY FGVIL EL T
Sbjct: 218 EKSDVYSFGVILWELAT 234
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 83/197 (42%), Gaps = 13/197 (6%)
Query: 352 ELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSE---DFKNRMQKIDHVKHPNVLPPLA 408
E +G G G+++R G +AVK L + +E +F + + ++HPN++ +
Sbjct: 43 EKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMG 101
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
+V EY GSL+ LLH S + D RL +A VAK + +H R
Sbjct: 102 AVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN--RNPP 159
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFL-----AQTSSLKINDISNQMCST 523
I H + ++GL + FL A T ++ S
Sbjct: 160 IVHRDLKSPNLLVDKKYTVKVCDFGL--SRLKASXFLXSKXAAGTPEWMAPEVLRDEPSN 217
Query: 524 IKADVYGFGVILLELLT 540
K+DVY FGVIL EL T
Sbjct: 218 EKSDVYSFGVILWELAT 234
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 333
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 334 EPIYIVTEYMSKGSLLDFLKG-ETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 392
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 393 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 442
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 443 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 489
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 490 PESLHDLM---CQCWRKEPEERPTFEYLQAFLED 520
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 250
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 251 EPIYIVTEYMSKGSLLDFLKG-ETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 309
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 310 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 359
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 360 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 406
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 407 PESLHDLM---CQCWRKEPEERPTFEYLQAFLED 437
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 250
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 251 EPIYIVTEYMSKGSLLDFLKG-ETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 309
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 310 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 359
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 360 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 406
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 407 PESLHDLM---CQCWRKEPEERPTFEYLQAFLED 437
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 16 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 74
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 75 EPIXIVTEYMSKGSLLDFLKG-ETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 133
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 134 NILVGENLVCK----------VADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFT 183
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 184 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 230
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 231 PESLHDLM---CQCWRKEPEERPTFEYLQAFLED 261
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 19 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 77
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 78 EPIYIVTEYMSKGSLLDFLKG-ETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 136
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 137 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 186
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 187 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 233
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 234 PESLHDLM---CQCWRKEPEERPTFEYLQAFLED 264
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 250
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 251 EPIYIVGEYMSKGSLLDFLKG-ETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 309
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 310 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 359
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 360 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 406
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 407 PESLHDLM---CQCWRKEPEERPTFEYLQAFLED 437
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKIRHEKLVQ-LYAVVSE 84
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 85 EPIYIVTEYMSKGSLLDFLKG-EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 144 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 193
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 194 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 240
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 241 PESLHDLM---CQCWRKDPEERPTFEYLQAFLED 271
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 39/273 (14%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPLAYY 410
LG G+ G ++ + +AVK ++ S+S E F N M+ + H K L L
Sbjct: 196 LGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDK----LVKLHAV 251
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEEL 464
+K+ ++ E+ GSL + L S+ G + +A +A+ +A I H +L
Sbjct: 252 VTKEPIYIITEFMAKGSLLDFLK-SDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDL 310
Query: 465 REDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS-- 522
R I + I+++GL ++ + + I + + +
Sbjct: 311 RAANI----------LVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFG 360
Query: 523 --TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEE 580
TIK+DV+ FG++L+E++T + G + V+R +E + E EE
Sbjct: 361 SFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP----EVIR---ALERGYRMPRPENCPEE 413
Query: 581 RMLKLLQVALRCINQSPNERPSMNQVAVMINNI 613
L + +RC P ERP+ + ++++
Sbjct: 414 ----LYNIMMRCWKNRPEERPTFEYIQSVLDDF 442
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 84
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 85 EPIYIVIEYMSKGSLLDFLKG-EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 144 NILVGENLVCK----------VADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFT 193
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 194 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 240
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 241 PESLHDLM---CQCWRKDPEERPTFEYLQAFLED 271
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 41/275 (14%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPLAYY 410
LG G+ G ++ + +AVK ++ S+S E F N M+ + H K L L
Sbjct: 23 LGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDK----LVKLHAV 78
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEEL 464
+K+ ++ E+ GSL + L S+ G + +A +A+ +A I H +L
Sbjct: 79 VTKEPIYIITEFMAKGSLLDFLK-SDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDL 137
Query: 465 REDGIAHGXXXXXXXXXXXXMEPC-ISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS- 522
R I C I+++GL ++ + + I + + +
Sbjct: 138 RAANILVSASLV-----------CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINF 186
Query: 523 ---TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASE 579
TIK+DV+ FG++L+E++T + G + V+R +E + E E
Sbjct: 187 GSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP----EVIR---ALERGYRMPRPENCPE 239
Query: 580 ERMLKLLQVALRCINQSPNERPSMNQVAVMINNIK 614
E L + +RC P ERP+ + ++++ +
Sbjct: 240 E----LYNIMMRCWKNRPEERPTFEYIQSVLDDFE 270
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 17 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 75
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 76 EPIYIVTEYMSKGSLLDFLKG-EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 134
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 135 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 184
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 185 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 231
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 232 PESLHDLM---CQCWRKDPEERPTFEYLQAFLED 262
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 15 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 73
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 74 EPIYIVTEYMSKGSLLDFLKG-EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 132
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 133 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 182
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 183 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 229
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 230 PESLHDLM---CQCWRKDPEERPTFEYLQAFLED 260
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 84
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 85 EPIYIVIEYMSKGSLLDFLKG-EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 144 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 193
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 194 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 240
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 241 PESLHDLM---CQCWRKDPEERPTFEYLQAFLED 271
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 84
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 85 EPIYIVTEYMSKGSLLDFLKG-EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 144 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 193
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 194 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 240
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 241 PESLHDLM---CQCWRKDPEERPTFEYLQAFLED 271
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 84
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 85 EPIYIVCEYMSKGSLLDFLKG-EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 144 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 193
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 194 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 240
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 241 PESLHDLM---CQCWRKDPEERPTFEYLQAFLED 271
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 81
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + ++A +A +A + H +LR
Sbjct: 82 EPIYIVTEYMNKGSLLDFLKG-ETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLRAA 140
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 141 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 190
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 191 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 237
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 238 PESLHDLM---CQCWRKEPEERPTFEYLQAFLED 268
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLKPGNMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 251
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +LR
Sbjct: 252 EPIYIVTEYMSKGSLLDFLKG-EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 310
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 311 NILVGENLVCK----------VADFGLGRLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 360
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 361 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 407
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 408 PESLHDLM---CQCWRKDPEERPTFEYLQAFLED 438
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 81
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + ++A +A +A + H +LR
Sbjct: 82 EPIYIVTEYMNKGSLLDFLKG-ETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLRAA 140
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 141 NILVGENLVCK----------VADFGLARLIEDNEWTARQGAKFPIKWTAPEAALYGRFT 190
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 191 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 237
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 238 PESLHDLM---CQCWRKEPEERPTFEYLQAFLED 268
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 113/258 (43%), Gaps = 21/258 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 81
Query: 413 KQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
+ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 82 EPPFYIIIEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIHR 136
Query: 473 XXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKADV 528
++++GL D + I + + + +IK+DV
Sbjct: 137 DLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDV 196
Query: 529 YGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQV 588
+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 197 WAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMRA 248
Query: 589 ALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 249 ---CWQWNPSDRPSFAEI 263
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 113/258 (43%), Gaps = 21/258 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L
Sbjct: 225 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 284
Query: 413 KQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
+ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 285 EPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIHR 339
Query: 473 XXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKADV 528
++++GL D + I + + + +IK+DV
Sbjct: 340 NLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDV 399
Query: 529 YGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQV 588
+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 400 WAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMRA 451
Query: 589 ALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 452 ---CWQWNPSDRPSFAEI 466
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 115/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 80
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 81 REPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIH 135
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 136 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKSD 195
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E E K+ +
Sbjct: 196 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRMER------PEGCPE----KVYE 244
Query: 588 VALRCINQSPNERPSMNQV 606
+ C +P++RPS ++
Sbjct: 245 LMRACWQWNPSDRPSFAEI 263
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 113/258 (43%), Gaps = 21/258 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 326
Query: 413 KQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
+ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 327 EPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIHR 381
Query: 473 XXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKADV 528
++++GL D + I + + + +IK+DV
Sbjct: 382 NLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDV 441
Query: 529 YGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQV 588
+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 442 WAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMRA 493
Query: 589 ALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 494 ---CWQWNPSDRPSFAEI 508
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 115/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 81
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 82 REPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIH 136
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 137 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKSD 196
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E E K+ +
Sbjct: 197 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRMER------PEGCPE----KVYE 245
Query: 588 VALRCINQSPNERPSMNQV 606
+ C +P++RPS ++
Sbjct: 246 LMRACWQWNPSDRPSFAEI 264
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 110/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 84
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY G L + L G E G+ + +AA +A +A + H +LR
Sbjct: 85 EPIYIVMEYMSKGCLLDFLKG-EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 144 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 193
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 194 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 240
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 241 PESLHDLM---CQCWRKDPEERPTFEYLQAFLED 271
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 116/269 (43%), Gaps = 27/269 (10%)
Query: 352 ELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPLA 408
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 27 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRLY 82
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 83 AVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER----N 137
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCSTI 524
H + I+++GL ++ +N + +K + N TI
Sbjct: 138 YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTI 197
Query: 525 KADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLK 584
K+DV+ FG++L E++T + G + ++ R ++ E + +
Sbjct: 198 KSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER--------GYRMVRPDNCPEELYQ 249
Query: 585 LLQVALRCINQSPNERPSMNQVAVMINNI 613
L+++ C + P +RP+ + + ++ +
Sbjct: 250 LMRL---CWKERPEDRPTFDYLRSVLEDF 275
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 116/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 84
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 85 REPPFYIIIEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIH 139
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 140 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 199
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 200 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMR 251
Query: 588 VALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 252 A---CWQWNPSDRPSFAEI 267
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 113/258 (43%), Gaps = 21/258 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 85
Query: 413 KQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
+ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 86 EPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIHR 140
Query: 473 XXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKADV 528
++++GL D + I + + + +IK+DV
Sbjct: 141 DLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDV 200
Query: 529 YGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQV 588
+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 201 WAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMRA 252
Query: 589 ALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 253 ---CWQWNPSDRPSFAEI 267
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 112/258 (43%), Gaps = 21/258 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 287
Query: 413 KQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
+ ++ E+ G+L + L N Q L +A ++ A+ E L + H
Sbjct: 288 EPPFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAM----EYLEKKNFIHR 342
Query: 473 XXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKADV 528
++++GL D + I + + + +IK+DV
Sbjct: 343 NLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDV 402
Query: 529 YGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQV 588
+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 403 WAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMRA 454
Query: 589 ALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 455 ---CWQWNPSDRPSFAEI 469
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 116/270 (42%), Gaps = 27/270 (10%)
Query: 351 AELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPL 407
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 18 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRL 73
Query: 408 AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELRED 467
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 74 YAVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER---- 128
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCST 523
H + I+++GL ++ +N + +K + N T
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFT 188
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERML 583
IK+DV+ FG++L E++T + G + ++ R ++ E +
Sbjct: 189 IKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER--------GYRMVRPDNCPEELY 240
Query: 584 KLLQVALRCINQSPNERPSMNQVAVMINNI 613
+L+++ C + P +RP+ + + ++ +
Sbjct: 241 QLMRL---CWKERPEDRPTFDYLRSVLEDF 267
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 116/270 (42%), Gaps = 27/270 (10%)
Query: 351 AELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPL 407
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 20 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRL 75
Query: 408 AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELRED 467
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 76 YAVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER---- 130
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCST 523
H + I+++GL ++ +N + +K + N T
Sbjct: 131 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFT 190
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERML 583
IK+DV+ FG++L E++T + G + ++ R ++ E +
Sbjct: 191 IKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER--------GYRMVRPDNCPEELY 242
Query: 584 KLLQVALRCINQSPNERPSMNQVAVMINNI 613
+L+++ C + P +RP+ + + ++ +
Sbjct: 243 QLMRL---CWKERPEDRPTFDYLRSVLEDF 269
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 116/270 (42%), Gaps = 27/270 (10%)
Query: 351 AELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPL 407
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 19 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRL 74
Query: 408 AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELRED 467
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 75 YAVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER---- 129
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCST 523
H + I+++GL ++ +N + +K + N T
Sbjct: 130 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFT 189
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERML 583
IK+DV+ FG++L E++T + G + ++ R ++ E +
Sbjct: 190 IKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER--------GYRMVRPDNCPEELY 241
Query: 584 KLLQVALRCINQSPNERPSMNQVAVMINNI 613
+L+++ C + P +RP+ + + ++ +
Sbjct: 242 QLMRL---CWKERPEDRPTFDYLRSVLEDF 268
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 110/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 84
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY G L + L G E G+ + +AA +A +A + H +LR
Sbjct: 85 EPIYIVTEYMSKGCLLDFLKG-EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 144 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 193
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 194 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 240
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 241 PESLHDLM---CQCWRKDPEERPTFEYLQAFLED 271
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 116/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 25 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 83
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 84 REPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIH 138
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 139 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 198
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 199 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMR 250
Query: 588 VALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 251 A---CWQWNPSDRPSFAEI 266
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 116/269 (43%), Gaps = 27/269 (10%)
Query: 352 ELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPLA 408
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 25 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRLY 80
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 81 AVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER----N 135
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCSTI 524
H + I+++GL ++ +N + +K + N TI
Sbjct: 136 YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTI 195
Query: 525 KADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLK 584
K+DV+ FG++L E++T + G + ++ R ++ E + +
Sbjct: 196 KSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER--------GYRMVRPDNCPEELYQ 247
Query: 585 LLQVALRCINQSPNERPSMNQVAVMINNI 613
L+++ C + P +RP+ + + ++ +
Sbjct: 248 LMRL---CWKERPEDRPTFDYLRSVLEDF 273
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 116/270 (42%), Gaps = 27/270 (10%)
Query: 351 AELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPL 407
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 18 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRL 73
Query: 408 AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELRED 467
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 74 YAVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER---- 128
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCST 523
H + I+++GL ++ +N + +K + N T
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFT 188
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERML 583
IK+DV+ FG++L E++T + G + ++ R ++ E +
Sbjct: 189 IKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER--------GYRMVRPDNCPEELY 240
Query: 584 KLLQVALRCINQSPNERPSMNQVAVMINNI 613
+L+++ C + P +RP+ + + ++ +
Sbjct: 241 QLMRL---CWKERPEDRPTFDYLRSVLEDF 267
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 116/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 84
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 85 REPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIH 139
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 140 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 199
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 200 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMR 251
Query: 588 VALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 252 A---CWQWNPSDRPSFAEI 267
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 116/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 81
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 82 REPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIH 136
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 137 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 196
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 197 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMR 248
Query: 588 VALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 249 A---CWQWNPSDRPSFAEI 264
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 116/270 (42%), Gaps = 27/270 (10%)
Query: 351 AELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPL 407
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 27 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRL 82
Query: 408 AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELRED 467
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 83 YAVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER---- 137
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCST 523
H + I+++GL ++ +N + +K + N T
Sbjct: 138 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFT 197
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERML 583
IK+DV+ FG++L E++T + G + ++ R ++ E +
Sbjct: 198 IKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER--------GYRMVRPDNCPEELY 249
Query: 584 KLLQVALRCINQSPNERPSMNQVAVMINNI 613
+L+++ C + P +RP+ + + ++ +
Sbjct: 250 QLMRL---CWKERPEDRPTFDYLRSVLEDF 276
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 116/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 81
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 82 REPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIH 136
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 137 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 196
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 197 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMR 248
Query: 588 VALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 249 A---CWQWNPSDRPSFAEI 264
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 115/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 34 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 92
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 93 REPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIH 147
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 148 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 207
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E E K+ +
Sbjct: 208 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRMER------PEGCPE----KVYE 256
Query: 588 VALRCINQSPNERPSMNQV 606
+ C +P++RPS ++
Sbjct: 257 LMRACWQWNPSDRPSFAEI 275
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 115/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 79
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q L +A ++ A+ E L + H
Sbjct: 80 REPPFYIIIEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAM----EYLEKKNFIH 134
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 135 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 194
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 195 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMR 246
Query: 588 VALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 247 A---CWQWNPSDRPSFAEI 262
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 113/258 (43%), Gaps = 21/258 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 85
Query: 413 KQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
+ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 86 EPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIHR 140
Query: 473 XXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKADV 528
++++GL D + I + + + +IK+DV
Sbjct: 141 DLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDV 200
Query: 529 YGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQV 588
+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 201 WAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMRA 252
Query: 589 ALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 253 ---CWQWNPSDRPSFAEI 267
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 116/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 79
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 80 REPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIH 134
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 135 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 194
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 195 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMR 246
Query: 588 VALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 247 A---CWQWNPSDRPSFAEI 262
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 115/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 84
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q L +A ++ A+ E L + H
Sbjct: 85 REPPFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAM----EYLEKKNFIH 139
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 140 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 199
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 200 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMR 251
Query: 588 VALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 252 A---CWQWNPSDRPSFAEI 267
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 112/270 (41%), Gaps = 27/270 (10%)
Query: 351 AELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPL 407
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 14 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRL 69
Query: 408 AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELRED 467
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 70 YAVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER---- 124
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKIN----DISNQMCST 523
H + I+++GL ++ + + I + N T
Sbjct: 125 NYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFT 184
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERML 583
IK+DV+ FG++L E++T + G + ++ R V + EE
Sbjct: 185 IKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVR-------PDNCPEE--- 234
Query: 584 KLLQVALRCINQSPNERPSMNQVAVMINNI 613
L Q+ C + P +RP+ + + ++ +
Sbjct: 235 -LYQLMRLCWKERPEDRPTFDYLRSVLEDF 263
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 116/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 79
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q + L +A ++ A+ E L + H
Sbjct: 80 REPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQISSAM----EYLEKKNFIH 134
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 135 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 194
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 195 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMR 246
Query: 588 VALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 247 A---CWQWNPSDRPSFAEI 262
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 114/270 (42%), Gaps = 27/270 (10%)
Query: 351 AELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPL 407
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 13 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRL 68
Query: 408 AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELRED 467
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 69 YAVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER---- 123
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCST 523
H + I+++GL ++ +N + +K + N T
Sbjct: 124 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFT 183
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERML 583
IK+DV+ FG++L E++T + G + ++ R V + EE
Sbjct: 184 IKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVR-------PDNCPEE--- 233
Query: 584 KLLQVALRCINQSPNERPSMNQVAVMINNI 613
L Q+ C + P +RP+ + + ++ +
Sbjct: 234 -LYQLMRLCWKERPEDRPTFDYLRSVLEDF 262
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 115/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 79
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q L +A ++ A+ E L + H
Sbjct: 80 REPPFYIIIEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAM----EYLEKKNFIH 134
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 135 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 194
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 195 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMR 246
Query: 588 VALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 247 A---CWQWNPSDRPSFAEI 262
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 115/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 79
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q L +A ++ A+ E L + H
Sbjct: 80 REPPFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAM----EYLEKKNFIH 134
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 135 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 194
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 195 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMR 246
Query: 588 VALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 247 A---CWQWNPSDRPSFAEI 262
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 116/270 (42%), Gaps = 27/270 (10%)
Query: 351 AELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPL 407
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 18 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRL 73
Query: 408 AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELRED 467
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 74 YAVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER---- 128
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCST 523
H + I+++GL ++ +N + +K + N T
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFT 188
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERML 583
IK+DV+ FG++L E++T + G + ++ R ++ E +
Sbjct: 189 IKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER--------GYRMVRPDNCPEELY 240
Query: 584 KLLQVALRCINQSPNERPSMNQVAVMINNI 613
+L+++ C + P +RP+ + + ++ +
Sbjct: 241 QLMRL---CWKERPEDRPTFDYLRSVLEDF 267
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 116/270 (42%), Gaps = 27/270 (10%)
Query: 351 AELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPL 407
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 24 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRL 79
Query: 408 AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELRED 467
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 80 YAVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER---- 134
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCST 523
H + I+++GL ++ +N + +K + N T
Sbjct: 135 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFT 194
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERML 583
IK+DV+ FG++L E++T + G + ++ R ++ E +
Sbjct: 195 IKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER--------GYRMVRPDNCPEELY 246
Query: 584 KLLQVALRCINQSPNERPSMNQVAVMINNI 613
+L+++ C + P +RP+ + + ++ +
Sbjct: 247 QLMRL---CWKERPEDRPTFDYLRSVLEDF 273
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 114/270 (42%), Gaps = 43/270 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPLAYY 410
LG G+ G ++ + +AVK ++ S+S E F N M+ + H K L L
Sbjct: 190 LGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDK----LVKLHAV 245
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALAL------IHEEL 464
+K+ ++ E+ GSL + L S+ G + +A +A+ +A IH +L
Sbjct: 246 VTKEPIYIITEFMAKGSLLDFLK-SDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDL 304
Query: 465 REDGIAHGXXXXXXXXXXXXMEPC-ISEYGLIVTENHDQSFLAQTSSLKINDISNQMCST 523
R I C I+++GL + + T+ IN S T
Sbjct: 305 RAANILVSASLV-----------CKIADFGL--ARVGAKFPIKWTAPEAINFGS----FT 347
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERML 583
IK+DV+ FG++L+E++T + G + V+R +E + E EE
Sbjct: 348 IKSDVWSFGILLMEIVTYGRIPYPGMSNP----EVIR---ALERGYRMPRPENCPEE--- 397
Query: 584 KLLQVALRCINQSPNERPSMNQVAVMINNI 613
L + +RC P ERP+ + ++++
Sbjct: 398 -LYNIMMRCWKNRPEERPTFEYIQSVLDDF 426
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 116/270 (42%), Gaps = 27/270 (10%)
Query: 351 AELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPL 407
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 23 VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRL 78
Query: 408 AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELRED 467
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 79 YAVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER---- 133
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCST 523
H + I+++GL ++ +N + +K + N T
Sbjct: 134 NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFT 193
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERML 583
IK+DV+ FG++L E++T + G + ++ R ++ E +
Sbjct: 194 IKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER--------GYRMVRPDNCPEELY 245
Query: 584 KLLQVALRCINQSPNERPSMNQVAVMINNI 613
+L+++ C + P +RP+ + + ++ +
Sbjct: 246 QLMRL---CWKERPEDRPTFDYLRSVLEDF 272
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 115/259 (44%), Gaps = 23/259 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L C+
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLG-VCT 79
Query: 413 KQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAH 471
++ ++ E+ G+L + L N Q L +A ++ A+ E L + H
Sbjct: 80 REPPFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAM----EYLEKKNFIH 134
Query: 472 GXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKAD 527
++++GL D + I + + + +IK+D
Sbjct: 135 RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSD 194
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
V+ FGV+L E+ T + G +L+ V+ ++ +++ +E E++ +L++
Sbjct: 195 VWAFGVLLWEIATYGMSPYPGIDLSQ-VYELLEKDYRME-------RPEGCPEKVYELMR 246
Query: 588 VALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 247 A---CWQWNPSDRPSFAEI 262
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 116/269 (43%), Gaps = 27/269 (10%)
Query: 352 ELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPLA 408
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 29 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRLY 84
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 85 AVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER----N 139
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCSTI 524
H + I+++GL ++ +N + +K + N TI
Sbjct: 140 YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTI 199
Query: 525 KADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLK 584
K+DV+ FG++L E++T + G + ++ R ++ E + +
Sbjct: 200 KSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER--------GYRMVRPDNCPEELYQ 251
Query: 585 LLQVALRCINQSPNERPSMNQVAVMINNI 613
L+++ C + P +RP+ + + ++ +
Sbjct: 252 LMRL---CWKERPEDRPTFDYLRSVLEDF 277
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 101/264 (38%), Gaps = 50/264 (18%)
Query: 371 LMLAVKRLRDWSI-SSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQ--EKLLVYEYQPNGS 427
+++ V ++RDWS S DF ++ HPNVLP L S L+ + P GS
Sbjct: 36 IVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGS 95
Query: 428 LFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEP 487
L+N+LH N D ++ A +A+ +A +H +EP
Sbjct: 96 LYNVLHEGTNF-VVDQSQAVKFALDMARGMAFLH----------------------TLEP 132
Query: 488 CISEYGLIVTENHDQSFLAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTGKLVQNN 547
I + L N + + + +I+ + +Y + E L K N
Sbjct: 133 LIPRHAL----NSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTN 188
Query: 548 GFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQVALR---------------- 591
+ W +V+ E V EV A+ ++ E +K+ LR
Sbjct: 189 RRSADMWSFAVLLWE---LVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMK 245
Query: 592 -CINQSPNERPSMNQVAVMINNIK 614
C+N+ P +RP + + ++ ++
Sbjct: 246 ICMNEDPAKRPKFDMIVPILEKMQ 269
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 108/257 (42%), Gaps = 21/257 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L
Sbjct: 40 LGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTL 99
Query: 413 KQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
+ +V EY P G+L + L N + L +A ++ A+ E L + H
Sbjct: 100 EPPFYIVTEYMPYGNLLDYLREC-NREEVTAVVLLYMATQISSAM----EYLEKKNFIHR 154
Query: 473 XXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKADV 528
++++GL D + I + + + +IK+DV
Sbjct: 155 DLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDV 214
Query: 529 YGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQV 588
+ FGV+L E+ T + G +L+ V+ ++ + + +E E K+ ++
Sbjct: 215 WAFGVLLWEIATYGMSPYPGIDLSQ-VYDLLEKGYRME----------QPEGCPPKVYEL 263
Query: 589 ALRCINQSPNERPSMNQ 605
C SP +RPS +
Sbjct: 264 MRACWKWSPADRPSFAE 280
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 110/274 (40%), Gaps = 43/274 (15%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG+G G ++ + +A+K L+ ++S E F Q + ++H ++ L S+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ-LYAVVSE 84
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALI------HEELRED 467
+ +V EY GSL + L G E G+ + +AA +A +A + H +L
Sbjct: 85 EPIYIVTEYMSKGSLLDFLKG-EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLAAA 143
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC----ST 523
I G ++++GL ++ Q + I + + T
Sbjct: 144 NILVGENLVCK----------VADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 193
Query: 524 IKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEV-----LIAEAAS 578
IK+DV+ FG++L EL T V G V R EV D+V +
Sbjct: 194 IKSDVWSFGILLTELTTKGRVPYPGM--------VNR-----EVLDQVERGYRMPCPPEC 240
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E + L+ +C + P ERP+ + + +
Sbjct: 241 PESLHDLM---CQCWRKDPEERPTFEYLQAFLED 271
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 117/275 (42%), Gaps = 29/275 (10%)
Query: 351 AELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPL 407
+ +G G G++Y+ + AVK L + + + FKN + + +H N+L +
Sbjct: 29 GQRIGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFM 86
Query: 408 AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELRED 467
Y +K + +V ++ SL++ LH SE F+ + +A A+ + +H +
Sbjct: 87 GY-STKPQLAIVTQWCEGSSLYHHLHASET--KFEMKKLIDIARQTARGMDYLHAK---- 139
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSL---------KINDISN 518
I H I ++GL TE S Q L ++ + +
Sbjct: 140 SIIHRDLKSNNIFLHEDNTVKIGDFGL-ATEKSRWSGSHQFEQLSGSILWMAPEVIRMQD 198
Query: 519 QMCSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAAS 578
+ ++DVY FG++L EL+TG+L +N N + V R + ++ +
Sbjct: 199 SNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSK----VRSNC 254
Query: 579 EERMLKLLQVALRCINQSPNERPSMNQVAVMINNI 613
+RM +L+ C+ + +ERPS ++ I +
Sbjct: 255 PKRMKRLMA---ECLKKKRDERPSFPRILAEIEEL 286
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 117/271 (43%), Gaps = 27/271 (9%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPLAYY 410
+G G G++Y+ + AVK L + + + FKN + + +H N+L + Y
Sbjct: 20 IGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY- 76
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+K + +V ++ SL++ LH SE F+ + +A A+ + +H + I
Sbjct: 77 STKPQLAIVTQWCEGSSLYHHLHASET--KFEMKKLIDIARQTARGMDYLHAK----SII 130
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENH---DQSFLAQTSSL-----KINDISNQMCS 522
H I ++GL ++ F + S+ ++ + +
Sbjct: 131 HRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPY 190
Query: 523 TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERM 582
+ ++DVY FG++L EL+TG+L +N N + V R + ++ + +RM
Sbjct: 191 SFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSK----VRSNCPKRM 246
Query: 583 LKLLQVALRCINQSPNERPSMNQVAVMINNI 613
+L+ C+ + +ERPS ++ I +
Sbjct: 247 KRLMA---ECLKKKRDERPSFPRILAEIEEL 274
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 26/126 (20%)
Query: 352 ELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNR--------MQKIDHVKHPNV 403
EL+GRG++G++Y+ LD+ R ++ F NR + ++ ++H N+
Sbjct: 19 ELIGRGRYGAVYKGSLDE---------RPVAVKVFSFANRQNFINEKNIYRVPLMEHDNI 69
Query: 404 LPPL-----AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALA 458
+ + E LLV EY PNGSL L + + DW S R+A V + LA
Sbjct: 70 ARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYL----SLHTSDWVSSCRLAHSVTRGLA 125
Query: 459 LIHEEL 464
+H EL
Sbjct: 126 YLHTEL 131
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 12/196 (6%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG G+ G ++ ++ +AVK L+ ++S + F + ++H ++ A +
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTRE 80
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHGX 473
+ ++ EY GSL + L E G+ + +A +A+ +A I R++ I
Sbjct: 81 EPIYIITEYMAKGSLLDFLKSDEGGKVL-LPKLIDFSAQIAEGMAYIE---RKNYIHRDL 136
Query: 474 XXXXXXXXXXXMEPC-ISEYGL--IVTENHDQSFLAQTSSLKIN--DISNQMCSTIKADV 528
M C I+++GL ++ +N + +K + N C TIK+DV
Sbjct: 137 RAANVLVSESLM--CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSDV 194
Query: 529 YGFGVILLELLT-GKL 543
+ FG++L E++T GK+
Sbjct: 195 WSFGILLYEIVTYGKI 210
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 113/269 (42%), Gaps = 27/269 (10%)
Query: 352 ELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDF---KNRMQKIDHVKHPNVLPPLA 408
E LG G+ G ++ + +AVK L+ S+S + F N M+++ H + L L
Sbjct: 19 ERLGAGQAGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR----LVRLY 74
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
+++ ++ EY NGSL + L + +G L +AA +A+ +A I E
Sbjct: 75 AVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEER----N 129
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKIN----DISNQMCSTI 524
H + I+++GL + + + I + N TI
Sbjct: 130 YIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPIKWTAPEAINYGTFTI 189
Query: 525 KADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLK 584
K+DV+ FG++L E++T + G + ++ R ++ E + +
Sbjct: 190 KSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER--------GYRMVRPDNCPEELYQ 241
Query: 585 LLQVALRCINQSPNERPSMNQVAVMINNI 613
L+++ C + P +RP+ + + ++ +
Sbjct: 242 LMRL---CWKERPEDRPTFDYLRSVLEDF 267
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 111/258 (43%), Gaps = 21/258 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 78
Query: 413 KQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
+ ++ E+ G+L + L N Q L +A ++ A+ E L + H
Sbjct: 79 EPPFYIIIEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAM----EYLEKKNFIHR 133
Query: 473 XXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKADV 528
++++GL D + I + + + +IK+DV
Sbjct: 134 DLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDV 193
Query: 529 YGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQV 588
+ FGV+L E+ T + G + + V+ ++ +++ +E E++ +L++
Sbjct: 194 WAFGVLLWEIATYGMSPYPGIDPSQ-VYELLEKDYRME-------RPEGCPEKVYELMRA 245
Query: 589 ALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 246 ---CWQWNPSDRPSFAEI 260
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 115/272 (42%), Gaps = 29/272 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPLAYY 410
+G G G++Y+ + AVK L + + + FKN + + +H N+L + Y
Sbjct: 32 IGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+ Q + V ++ SL++ LH SE F+ + +A A+ + +H + I
Sbjct: 90 TAPQLAI-VTQWCEGSSLYHHLHASET--KFEMKKLIDIARQTARGMDYLHAK----SII 142
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSL---------KINDISNQMC 521
H I ++GL TE S Q L ++ + +
Sbjct: 143 HRDLKSNNIFLHEDNTVKIGDFGL-ATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNP 201
Query: 522 STIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEER 581
+ ++DVY FG++L EL+TG+L +N N + V R + ++ + +R
Sbjct: 202 YSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSK----VRSNCPKR 257
Query: 582 MLKLLQVALRCINQSPNERPSMNQVAVMINNI 613
M +L+ C+ + +ERPS ++ I +
Sbjct: 258 MKRLMA---ECLKKKRDERPSFPRILAEIEEL 286
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 111/265 (41%), Gaps = 35/265 (13%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G++G +Y V L +AVK L++ ++ E+F + +KHPN++ L
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 78
Query: 413 KQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
+ ++ E+ G+L + L N Q L +A ++ A+ E L + H
Sbjct: 79 EPPFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAM----EYLEKKNFIHR 133
Query: 473 XXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQT-----------SSLKINDISNQMC 521
++++GL D +F A SL N S
Sbjct: 134 DLAARNCLVGENHLVKVADFGLSRLMTGD-TFTAHAGAKFPIKWTAPESLAYNKFS---- 188
Query: 522 STIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEER 581
IK+DV+ FGV+L E+ T + G + + V+ ++ +++ +E E E
Sbjct: 189 --IKSDVWAFGVLLWEIATYGMSPYPGIDPSQ-VYELLEKDYRMER------PEGCPE-- 237
Query: 582 MLKLLQVALRCINQSPNERPSMNQV 606
K+ ++ C +P++RPS ++
Sbjct: 238 --KVYELMRACWQWNPSDRPSFAEI 260
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 109/258 (42%), Gaps = 21/258 (8%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCS 412
LG G+ G +Y V L +AVK L++ ++ E+F + +KHPN++ L
Sbjct: 19 LGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 78
Query: 413 KQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
+ ++ E+ G+L + L N Q L +A ++ A+ E L + H
Sbjct: 79 EPPFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAM----EYLEKKNFIHR 133
Query: 473 XXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TIKADV 528
++++GL D + I + + + +IK+DV
Sbjct: 134 DLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDV 193
Query: 529 YGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQV 588
+ FGV+L E+ T + G + + V+ ++ +++ +E E E K+ ++
Sbjct: 194 WAFGVLLWEIATYGMSPYPGIDPSQ-VYELLEKDYRMER------PEGCPE----KVYEL 242
Query: 589 ALRCINQSPNERPSMNQV 606
C +P++RPS ++
Sbjct: 243 MRACWQWNPSDRPSFAEI 260
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 97/262 (37%), Gaps = 54/262 (20%)
Query: 371 LMLAVKRLRDWSI-SSEDFKNRMQKIDHVKHPNVLPPLAYYCSK--QEKLLVYEYQPNGS 427
+++ V ++RDWS S DF ++ HPNVLP L S L+ + P GS
Sbjct: 36 IVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWXPYGS 95
Query: 428 LFNLLHGSENGQSF--DWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXM 485
L+N+LH G +F D ++ A A+ A +H +
Sbjct: 96 LYNVLH---EGTNFVVDQSQAVKFALDXARGXAFLH----------------------TL 130
Query: 486 EPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTGKLVQ 545
EP I + L N + + + +I+ + Y + E L K
Sbjct: 131 EPLIPRHAL----NSRSVXIDEDXTARISXADVKFSFQSPGRXYAPAWVAPEALQKKPED 186
Query: 546 NNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQVALR-------------- 591
N + W +V+ W + V EV A+ ++ E K+ LR
Sbjct: 187 TNRRSADXWSFAVLL--WEL-VTREVPFADLSNXEIGXKVALEGLRPTIPPGISPHVSKL 243
Query: 592 ---CINQSPNERPSMNQVAVMI 610
C N+ P +RP + + ++
Sbjct: 244 XKICXNEDPAKRPKFDXIVPIL 265
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 12/196 (6%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG G+ G ++ ++ +AVK L+ ++S + F + ++H ++ A +
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKE 79
Query: 414 QEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHGX 473
+ ++ E+ GSL + L E G+ + +A +A+ +A I R++ I
Sbjct: 80 EPIYIITEFMAKGSLLDFLKSDEGGKVL-LPKLIDFSAQIAEGMAYIE---RKNYIHRDL 135
Query: 474 XXXXXXXXXXXMEPC-ISEYGLIVTENHDQSFLAQTSSLKIN----DISNQMCSTIKADV 528
M C I+++GL ++ + + I + N C TIK++V
Sbjct: 136 RAANVLVSESLM--CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSNV 193
Query: 529 YGFGVILLELLT-GKL 543
+ FG++L E++T GK+
Sbjct: 194 WSFGILLYEIVTYGKI 209
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 116/281 (41%), Gaps = 52/281 (18%)
Query: 352 ELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYC 411
E++GRG G + + +A+K++ S + F ++++ V HPN++ Y
Sbjct: 15 EVVGRGAFGVVCKAKWR-AKDVAIKQIESES-ERKAFIVELRQLSRVNHPNIV--KLYGA 70
Query: 412 SKQEKLLVYEYQPNGSLFNLLHGSEN------GQSFDWGSRLRVAACVAKAL---ALIHE 462
LV EY GSL+N+LHG+E + W + ++ ALIH
Sbjct: 71 CLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHR 130
Query: 463 ELREDG---IAHGXXXXXXXXXXXXMEPCISEYGL---IVTENHDQSFLAQTSSLKINDI 516
+L+ +A G I ++G I T + A + ++ +
Sbjct: 131 DLKPPNLLLVAGGTVLK------------ICDFGTACDIQTHMTNNKGSAAWMAPEVFEG 178
Query: 517 SNQMCSTIKADVYGFGVILLELLTGKL----VQNNGFNLATWVHSVVREEWTVEVFDEVL 572
SN + K DV+ +G+IL E++T + + F + VH+ R L
Sbjct: 179 SNY---SEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPP---------L 226
Query: 573 IAEAASEERMLKLLQVALRCINQSPNERPSMNQVAVMINNI 613
I + + RC ++ P++RPSM ++ ++ ++
Sbjct: 227 IKNLPK-----PIESLMTRCWSKDPSQRPSMEEIVKIMTHL 262
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 116/281 (41%), Gaps = 52/281 (18%)
Query: 352 ELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYC 411
E++GRG G + + +A+K++ S + F ++++ V HPN++ Y
Sbjct: 14 EVVGRGAFGVVCKAKWR-AKDVAIKQIESES-ERKAFIVELRQLSRVNHPNIVK--LYGA 69
Query: 412 SKQEKLLVYEYQPNGSLFNLLHGSEN------GQSFDWGSRLRVAACVAKAL---ALIHE 462
LV EY GSL+N+LHG+E + W + ++ ALIH
Sbjct: 70 CLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHR 129
Query: 463 ELREDG---IAHGXXXXXXXXXXXXMEPCISEYGL---IVTENHDQSFLAQTSSLKINDI 516
+L+ +A G I ++G I T + A + ++ +
Sbjct: 130 DLKPPNLLLVAGGTVLK------------ICDFGTACDIQTHMTNNKGSAAWMAPEVFEG 177
Query: 517 SNQMCSTIKADVYGFGVILLELLTGKL----VQNNGFNLATWVHSVVREEWTVEVFDEVL 572
SN + K DV+ +G+IL E++T + + F + VH+ R L
Sbjct: 178 SNY---SEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPP---------L 225
Query: 573 IAEAASEERMLKLLQVALRCINQSPNERPSMNQVAVMINNI 613
I + + RC ++ P++RPSM ++ ++ ++
Sbjct: 226 IKNLPK-----PIESLMTRCWSKDPSQRPSMEEIVKIMTHL 261
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 111/252 (44%), Gaps = 33/252 (13%)
Query: 373 LAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYY--CSKQEKL-LVYEYQPNGSLF 429
+AVK +++ S+S ++F Q + + HP ++ +Y CSK+ + +V EY NG L
Sbjct: 35 VAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLV---KFYGVCSKEYPIYIVTEYISNGCLL 91
Query: 430 NLLHGSENGQSFDWGSRLRVAACVAKALALI--HEELREDGIAHGXXXXXXXXXXXXMEP 487
N L +G+ + L + V + +A + H+ + D A
Sbjct: 92 NYLRS--HGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVK----- 144
Query: 488 CISEYGLIVTENHDQSFLAQTSSLKIN----DISNQMCSTIKADVYGFGVILLELLT-GK 542
+S++G+ DQ + + + ++ + + K+DV+ FG+++ E+ + GK
Sbjct: 145 -VSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGK 203
Query: 543 LVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQVALRCINQSPNERPS 602
+ ++L T V++ ++ L ++ + Q+ C ++ P +RP+
Sbjct: 204 M----PYDLYTNSEVVLKVSQGHRLYRPHLASDT--------IYQIMYSCWHELPEKRPT 251
Query: 603 MNQVAVMINNIK 614
Q+ I ++
Sbjct: 252 FQQLLSSIEPLR 263
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 124/310 (40%), Gaps = 71/310 (22%)
Query: 339 NKLKFEDLLRAPAELLGRGKHGSLYRV-VLDDGLML--AVKRLRDWSISSE--DFKNRMQ 393
N +KF+D++ G G G + + + DGL + A+KR+++++ + DF ++
Sbjct: 25 NDIKFQDVI-------GEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELE 77
Query: 394 ---KIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGS---ENGQSFDWGSR- 446
K+ H HPN++ L + L EY P+G+L + L S E +F +
Sbjct: 78 VLCKLGH--HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANST 135
Query: 447 ---------LRVAACVAKAL------ALIHEELREDGIAHGXXXXXXXXXXXXMEPCISE 491
L AA VA+ + IH +L I G I++
Sbjct: 136 ASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAK----------IAD 185
Query: 492 YGLIVTENHDQSFLAQT-SSLKINDIS----NQMCSTIKADVYGFGVILLELLTGKLVQN 546
+GL + ++ +T L + ++ N T +DV+ +GV+L E+++
Sbjct: 186 FGL---SRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY 242
Query: 547 NGFNLATWVHSV---VREEWTVEVFDEVLIAEAASEERMLKLLQVALRCINQSPNERPSM 603
G A + R E + DEV + +C + P ERPS
Sbjct: 243 CGMTCAELYEKLPQGYRLEKPLNCDDEV--------------YDLMRQCWREKPYERPSF 288
Query: 604 NQVAVMINNI 613
Q+ V +N +
Sbjct: 289 AQILVSLNRM 298
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 124/310 (40%), Gaps = 71/310 (22%)
Query: 339 NKLKFEDLLRAPAELLGRGKHGSLYRV-VLDDGLML--AVKRLRDWSISSE--DFKNRMQ 393
N +KF+D++ G G G + + + DGL + A+KR+++++ + DF ++
Sbjct: 15 NDIKFQDVI-------GEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELE 67
Query: 394 ---KIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGS---ENGQSFDWGSR- 446
K+ H HPN++ L + L EY P+G+L + L S E +F +
Sbjct: 68 VLCKLGH--HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANST 125
Query: 447 ---------LRVAACVAKAL------ALIHEELREDGIAHGXXXXXXXXXXXXMEPCISE 491
L AA VA+ + IH +L I G I++
Sbjct: 126 ASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAK----------IAD 175
Query: 492 YGLIVTENHDQSFLAQT-SSLKINDIS----NQMCSTIKADVYGFGVILLELLTGKLVQN 546
+GL + ++ +T L + ++ N T +DV+ +GV+L E+++
Sbjct: 176 FGL---SRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY 232
Query: 547 NGFNLATWVHSV---VREEWTVEVFDEVLIAEAASEERMLKLLQVALRCINQSPNERPSM 603
G A + R E + DEV + +C + P ERPS
Sbjct: 233 CGMTCAELYEKLPQGYRLEKPLNCDDEV--------------YDLMRQCWREKPYERPSF 278
Query: 604 NQVAVMINNI 613
Q+ V +N +
Sbjct: 279 AQILVSLNRM 288
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 19/197 (9%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y ++A+K L I E ++++++ H+ HPN+L
Sbjct: 31 LGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHHPNILRLYN 90
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ ++ L+ EY P G L+ L S +FD + +A AL H +
Sbjct: 91 YFYDRRRIYLILEYAPRGELYKELQKS---CTFDEQRTATIMEELADALMYCHGK----K 143
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TI 524
+ H E I+++G V H S +T ++ + +M
Sbjct: 144 VIHRDIKPENLLLGLKGELKIADFGWSV---HAPSLRRKTMCGTLDYLPPEMIEGRMHNE 200
Query: 525 KADVYGFGVILLELLTG 541
K D++ GV+ ELL G
Sbjct: 201 KVDLWCIGVLCYELLVG 217
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 123/310 (39%), Gaps = 71/310 (22%)
Query: 339 NKLKFEDLLRAPAELLGRGKHGSLYRV-VLDDGLML--AVKRLRDWSISSE--DFKNRMQ 393
N +KF+D++ G G G + + + DGL + A+KR+++++ + DF ++
Sbjct: 22 NDIKFQDVI-------GEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELE 74
Query: 394 ---KIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGS---ENGQSFDWGSR- 446
K+ H HPN++ L + L EY P+G+L + L S E +F +
Sbjct: 75 VLCKLGH--HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANST 132
Query: 447 ---------LRVAACVAKAL------ALIHEELREDGIAHGXXXXXXXXXXXXMEPCISE 491
L AA VA+ + IH L I G I++
Sbjct: 133 ASTLSSQQLLHFAADVARGMDYLSQKQFIHRNLAARNILVGENYVAK----------IAD 182
Query: 492 YGLIVTENHDQSFLAQT-SSLKINDIS----NQMCSTIKADVYGFGVILLELLTGKLVQN 546
+GL + ++ +T L + ++ N T +DV+ +GV+L E+++
Sbjct: 183 FGL---SRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY 239
Query: 547 NGFNLATWVHSV---VREEWTVEVFDEVLIAEAASEERMLKLLQVALRCINQSPNERPSM 603
G A + R E + DEV + +C + P ERPS
Sbjct: 240 CGMTCAELYEKLPQGYRLEKPLNCDDEV--------------YDLMRQCWREKPYERPSF 285
Query: 604 NQVAVMINNI 613
Q+ V +N +
Sbjct: 286 AQILVSLNRM 295
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 21 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 80
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G ++ L + FD +A AL+ H +
Sbjct: 81 YFHDATRVYLILEYAPRGEVYKEL---QKLSKFDEQRTATYITELANALSYCHSK----R 133
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 134 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDE-KV 192
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 193 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 240
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 241 ----LISRLLKHNPSQRPMLREV 259
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 114/269 (42%), Gaps = 29/269 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPLAYY 410
+G G G++Y+ + AVK L + + + FKN + + +H N+L + Y
Sbjct: 44 IGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY- 100
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+K + +V ++ SL++ LH E F+ + +A A+ + +H + I
Sbjct: 101 STKPQLAIVTQWCEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAK----SII 154
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSL---------KINDISNQMC 521
H + I ++GL TE S Q L ++ + ++
Sbjct: 155 HRDLKSNNIFLHEDLTVKIGDFGL-ATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNP 213
Query: 522 STIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEER 581
+ ++DVY FG++L EL+TG+L +N N + V R + ++ + +
Sbjct: 214 YSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSK----VRSNCPKA 269
Query: 582 MLKLLQVALRCINQSPNERPSMNQVAVMI 610
M +L+ C+ + +ERP Q+ I
Sbjct: 270 MKRLMA---ECLKKKRDERPLFPQILASI 295
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 115/268 (42%), Gaps = 27/268 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPLAYY 410
+G G G++Y+ + AVK L + + + FKN + + +H N+L + Y
Sbjct: 43 IGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY- 99
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+K + +V ++ SL++ LH E F+ + +A A+ + +H + I
Sbjct: 100 STKPQLAIVTQWCEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAK----SII 153
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENH---DQSFLAQTSSL-----KINDISNQMCS 522
H + I ++GL ++ F + S+ ++ + ++
Sbjct: 154 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 213
Query: 523 TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERM 582
+ ++DVY FG++L EL+TG+L +N N + V R + ++ + + M
Sbjct: 214 SFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSK----VRSNCPKAM 269
Query: 583 LKLLQVALRCINQSPNERPSMNQVAVMI 610
+L+ C+ + +ERP Q+ I
Sbjct: 270 KRLMA---ECLKKKRDERPLFPQILASI 294
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 115/268 (42%), Gaps = 27/268 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPLAYY 410
+G G G++Y+ + AVK L + + + FKN + + +H N+L + Y
Sbjct: 44 IGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY- 100
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+K + +V ++ SL++ LH E F+ + +A A+ + +H + I
Sbjct: 101 STKPQLAIVTQWCEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAK----SII 154
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENH---DQSFLAQTSSL-----KINDISNQMCS 522
H + I ++GL ++ F + S+ ++ + ++
Sbjct: 155 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 214
Query: 523 TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERM 582
+ ++DVY FG++L EL+TG+L +N N + V R + ++ + + M
Sbjct: 215 SFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSK----VRSNCPKAM 270
Query: 583 LKLLQVALRCINQSPNERPSMNQVAVMI 610
+L+ C+ + +ERP Q+ I
Sbjct: 271 KRLMA---ECLKKKRDERPLFPQILASI 295
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 114/269 (42%), Gaps = 29/269 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPLAYY 410
+G G G++Y+ + AVK L + + + FKN + + +H N+L + Y
Sbjct: 36 IGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY- 92
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+K + +V ++ SL++ LH E F+ + +A A+ + +H + I
Sbjct: 93 STKPQLAIVTQWCEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAK----SII 146
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSL---------KINDISNQMC 521
H + I ++GL TE S Q L ++ + ++
Sbjct: 147 HRDLKSNNIFLHEDLTVKIGDFGL-ATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNP 205
Query: 522 STIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEER 581
+ ++DVY FG++L EL+TG+L +N N + V R + ++ + +
Sbjct: 206 YSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSK----VRSNCPKA 261
Query: 582 MLKLLQVALRCINQSPNERPSMNQVAVMI 610
M +L+ C+ + +ERP Q+ I
Sbjct: 262 MKRLMA---ECLKKKRDERPLFPQILASI 287
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 115/268 (42%), Gaps = 27/268 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPLAYY 410
+G G G++Y+ + AVK L + + + FKN + + +H N+L + Y
Sbjct: 21 IGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY- 77
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+K + +V ++ SL++ LH E F+ + +A A+ + +H + I
Sbjct: 78 STKPQLAIVTQWCEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAK----SII 131
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENH---DQSFLAQTSSL-----KINDISNQMCS 522
H + I ++GL ++ F + S+ ++ + ++
Sbjct: 132 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 191
Query: 523 TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERM 582
+ ++DVY FG++L EL+TG+L +N N + V R + ++ + + M
Sbjct: 192 SFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSK----VRSNCPKAM 247
Query: 583 LKLLQVALRCINQSPNERPSMNQVAVMI 610
+L+ C+ + +ERP Q+ I
Sbjct: 248 KRLMA---ECLKKKRDERPLFPQILASI 272
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 113/276 (40%), Gaps = 31/276 (11%)
Query: 352 ELLGRGKHGSLYRVVLDDGLMLAVKRLR-----DWSISSEDFKNRMQKIDHVKHPNVLPP 406
E++G G G +YR G +AVK R D S + E+ + + +KHPN++
Sbjct: 13 EIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNII-A 70
Query: 407 LAYYCSKQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV-----AKALALI 460
L C K+ L LV E+ G L +L G +++A + + +I
Sbjct: 71 LRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPII 130
Query: 461 HEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSS---LKINDIS 517
H +L+ I ++ I+++GL E H + ++ + + I
Sbjct: 131 HRDLKSSNILILQKVENGDLSNKILK--ITDFGL-AREWHRTTKMSAAGAYAWMAPEVIR 187
Query: 518 NQMCSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAA 577
M S +DV+ +GV+L ELLTG+ V G + + V + + + +
Sbjct: 188 ASMFSK-GSDVWSYGVLLWELLTGE-VPFRGIDGLAVAYGVAMNKLALPI-------PST 238
Query: 578 SEERMLKLLQVALRCINQSPNERPSMNQVAVMINNI 613
E KL++ C N P+ RPS + + I
Sbjct: 239 CPEPFAKLME---DCWNPDPHSRPSFTNILDQLTTI 271
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 17 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 76
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 77 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 129
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 130 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDTLCGTLDYLPPEMIEGRMHDE-KV 188
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 189 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 236
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 237 ----LISRLLKHNPSQRPMLREV 255
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 33 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 92
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 93 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 145
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 146 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDE-KV 204
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 205 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 252
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 253 ----LISRLLKHNPSQRPMLREV 271
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 115/268 (42%), Gaps = 27/268 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPLAYY 410
+G G G++Y+ + AVK L + + + FKN + + +H N+L + Y
Sbjct: 18 IGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY- 74
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+K + +V ++ SL++ LH E F+ + +A A+ + +H + I
Sbjct: 75 STKPQLAIVTQWCEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAK----SII 128
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENH---DQSFLAQTSSL-----KINDISNQMCS 522
H + I ++GL ++ F + S+ ++ + ++
Sbjct: 129 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 188
Query: 523 TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERM 582
+ ++DVY FG++L EL+TG+L +N N + V R + ++ + + M
Sbjct: 189 SFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSK----VRSNCPKAM 244
Query: 583 LKLLQVALRCINQSPNERPSMNQVAVMI 610
+L+ C+ + +ERP Q+ I
Sbjct: 245 KRLMA---ECLKKKRDERPLFPQILASI 269
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 115/268 (42%), Gaps = 27/268 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPLAYY 410
+G G G++Y+ + AVK L + + + FKN + + +H N+L + Y
Sbjct: 21 IGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY- 77
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+K + +V ++ SL++ LH E F+ + +A A+ + +H + I
Sbjct: 78 STKPQLAIVTQWCEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAK----SII 131
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENH---DQSFLAQTSSL-----KINDISNQMCS 522
H + I ++GL ++ F + S+ ++ + ++
Sbjct: 132 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 191
Query: 523 TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERM 582
+ ++DVY FG++L EL+TG+L +N N + V R + ++ + + M
Sbjct: 192 SFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSK----VRSNCPKAM 247
Query: 583 LKLLQVALRCINQSPNERPSMNQVAVMI 610
+L+ C+ + +ERP Q+ I
Sbjct: 248 KRLMA---ECLKKKRDERPLFPQILASI 272
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 21 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 80
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 81 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 133
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 134 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDE-KV 192
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 193 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 240
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 241 ----LISRLLKHNPSQRPMLREV 259
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 21 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 80
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G ++ L + FD +A AL+ H +
Sbjct: 81 YFHDATRVYLILEYAPRGEVYKEL---QKLSKFDEQRTATYITELANALSYCHSK----R 133
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + L I +M K
Sbjct: 134 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLXGTLDYLPPEMIEGRMHDE-KV 192
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 193 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 240
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 241 ----LISRLLKHNPSQRPMLREV 259
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 42 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 101
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 102 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 154
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 155 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDE-KV 213
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 214 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 261
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 262 ----LISRLLKHNPSQRPMLREV 280
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 76 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 128
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDE-KV 187
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 188 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 235
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 236 ----LISRLLKHNPSQRPMLREV 254
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 114/269 (42%), Gaps = 29/269 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPLAYY 410
+G G G++Y+ + AVK L + + + FKN + + +H N+L + Y
Sbjct: 16 IGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY- 72
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+K + +V ++ SL++ LH E F+ + +A A+ + +H + I
Sbjct: 73 STKPQLAIVTQWCEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAK----SII 126
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSL---------KINDISNQMC 521
H + I ++GL TE S Q L ++ + ++
Sbjct: 127 HRDLKSNNIFLHEDLTVKIGDFGL-ATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNP 185
Query: 522 STIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEER 581
+ ++DVY FG++L EL+TG+L +N N + V R + ++ + +
Sbjct: 186 YSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSK----VRSNCPKA 241
Query: 582 MLKLLQVALRCINQSPNERPSMNQVAVMI 610
M +L+ C+ + +ERP Q+ I
Sbjct: 242 MKRLMA---ECLKKKRDERPLFPQILASI 267
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y + +LA+K L + ++++++ H++HPN+L
Sbjct: 16 LGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 76 YFHDSTRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----K 128
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDE-KV 187
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATW---VHSVVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + R E+T F + E A +
Sbjct: 188 DLWSLGVLCYEFLVGK----PPFEANTYQDTYKRISRVEFTFPDF----VTEGARD---- 235
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 236 ----LISRLLKHNPSQRPMLREV 254
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 79 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 131
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 132 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDE-KV 190
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 191 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 238
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 239 ----LISRLLKHNPSQRPMLREV 257
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 115/268 (42%), Gaps = 27/268 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPLAYY 410
+G G G++Y+ + AVK L + + + FKN + + +H N+L + Y
Sbjct: 16 IGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY- 72
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+K + +V ++ SL++ LH E F+ + +A A+ + +H + I
Sbjct: 73 STKPQLAIVTQWCEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAK----SII 126
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENH---DQSFLAQTSSL-----KINDISNQMCS 522
H + I ++GL ++ F + S+ ++ + ++
Sbjct: 127 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 186
Query: 523 TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERM 582
+ ++DVY FG++L EL+TG+L +N N + V R + ++ + + M
Sbjct: 187 SFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSK----VRSNCPKAM 242
Query: 583 LKLLQVALRCINQSPNERPSMNQVAVMI 610
+L+ C+ + +ERP Q+ I
Sbjct: 243 KRLMA---ECLKKKRDERPLFPQILASI 267
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 79 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 131
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 132 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDE-KV 190
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 191 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 238
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 239 ----LISRLLKHNPSQRPMLREV 257
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 38/265 (14%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 17 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 76
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 77 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 129
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS----TI 524
+ H E I+++G H S T S ++ + +M
Sbjct: 130 VIHRDIKPENLLLGSAGELKIADFGWSC---HAPSSRRTTLSGTLDYLPPEMIEGRMHDE 186
Query: 525 KADVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEER 581
K D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 187 KVDLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD-- 236
Query: 582 MLKLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 237 ------LISRLLKHNPSQRPMLREV 255
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 109/269 (40%), Gaps = 46/269 (17%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 20 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 79
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALA------LIHE 462
Y+ L+ EY P G+++ L + FD +A AL+ +IH
Sbjct: 80 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSKRVIHR 136
Query: 463 ELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQM 520
+++ + + G E I+++G V + + L I +M
Sbjct: 137 DIKPENLLLGSAG----------ELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRM 186
Query: 521 CSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAA 577
K D++ GV+ E L GK F T+ + + R E+T F + E A
Sbjct: 187 HDE-KVDLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGA 237
Query: 578 SEERMLKLLQVALRCINQSPNERPSMNQV 606
+ + R + +P++RP + +V
Sbjct: 238 RD--------LISRLLKHNPSQRPMLREV 258
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 15 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 74
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 75 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 127
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 128 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDE-KV 186
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 187 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 234
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 235 ----LISRLLKHNPSQRPMLREV 253
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 42 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 101
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 102 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 154
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + L I +M K
Sbjct: 155 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDE-KV 213
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 214 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 261
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 262 ----LISRLLKHNPSQRPMLREV 280
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 105/262 (40%), Gaps = 32/262 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 76 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 128
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV-TENHDQSFLAQTSSLKINDISNQMCSTIKAD 527
+ H E I+++G V + ++ L T ++ K D
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTXLCGTLDYLPPEMIEGRMHDEKVD 188
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERMLK 584
++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 189 LWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD----- 235
Query: 585 LLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 236 ---LISRLLKHNPSQRPMLREV 254
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 17 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 76
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 77 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 129
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + L I +M K
Sbjct: 130 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDE-KV 188
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 189 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 236
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 237 ----LISRLLKHNPSQRPMLREV 255
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 79 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 131
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 132 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDE-KV 190
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 191 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 238
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 239 ----LISRLLKHNPSQRPMLREV 257
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 76 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 128
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + L I +M K
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDE-KV 187
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 188 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 235
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 236 ----LISRLLKHNPSQRPMLREV 254
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 18 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 77
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 78 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 130
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + L I +M K
Sbjct: 131 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDE-KV 189
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 190 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 237
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 238 ----LISRLLKHNPSQRPMLREV 256
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 76 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 128
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + L I +M K
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTELCGTLDYLPPEMIEGRMHDE-KV 187
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 188 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 235
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 236 ----LISRLLKHNPSQRPMLREV 254
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 21 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 80
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 81 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 133
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + L I +M K
Sbjct: 134 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDE-KV 192
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 193 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 240
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 241 ----LISRLLKHNPSQRPMLREV 259
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 79 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 131
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + L I +M K
Sbjct: 132 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDE-KV 190
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 191 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 238
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 239 ----LISRLLKHNPSQRPMLREV 257
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 109/269 (40%), Gaps = 46/269 (17%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALA------LIHE 462
Y+ L+ EY P G+++ L + FD +A AL+ +IH
Sbjct: 76 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSKRVIHR 132
Query: 463 ELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQM 520
+++ + + G E I+++G V + + L I +M
Sbjct: 133 DIKPENLLLGSAG----------ELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRM 182
Query: 521 CSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAA 577
K D++ GV+ E L GK F T+ + + R E+T F + E A
Sbjct: 183 HDE-KVDLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGA 233
Query: 578 SEERMLKLLQVALRCINQSPNERPSMNQV 606
+ + R + +P++RP + +V
Sbjct: 234 RD--------LISRLLKHNPSQRPMLREV 254
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 18 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 77
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 78 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 130
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+ +G V + + L I +M K
Sbjct: 131 VIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDE-KV 189
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 190 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 237
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 238 ----LISRLLKHNPSQRPMLREV 256
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 76 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 128
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + L I +M K
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDE-KV 187
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 188 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 235
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 236 ----LISRLLKHNPSQRPMLREV 254
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 13 LGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 72
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 73 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 125
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 126 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDE-KV 184
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 185 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 232
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 233 ----LISRLLKHNPSQRPMLREV 251
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 46/269 (17%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALA------LIHE 462
Y+ L+ EY P G+++ L + FD +A AL+ +IH
Sbjct: 79 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSKRVIHR 135
Query: 463 ELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQM 520
+++ + + G E I+ +G V + + L I +M
Sbjct: 136 DIKPENLLLGSAG----------ELKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRM 185
Query: 521 CSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAA 577
K D++ GV+ E L GK F T+ + + R E+T F + E A
Sbjct: 186 HDE-KVDLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGA 236
Query: 578 SEERMLKLLQVALRCINQSPNERPSMNQV 606
+ + R + +P++RP + +V
Sbjct: 237 RD--------LISRLLKHNPSQRPMLREV 257
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 114/268 (42%), Gaps = 27/268 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSED---FKNRMQKIDHVKHPNVLPPLAYY 410
+G G G++Y+ + AVK L + + + FKN + + +H N+L + Y
Sbjct: 16 IGSGSFGTVYKGKWHGDV--AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 411 CSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIA 470
+ Q + V ++ SL++ LH E F+ + +A A+ + +H + I
Sbjct: 74 TAPQLAI-VTQWCEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAK----SII 126
Query: 471 HGXXXXXXXXXXXXMEPCISEYGLIVTENH---DQSFLAQTSSL-----KINDISNQMCS 522
H + I ++GL ++ F + S+ ++ + ++
Sbjct: 127 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY 186
Query: 523 TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERM 582
+ ++DVY FG++L EL+TG+L +N N + V R + ++ + + M
Sbjct: 187 SFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSK----VRSNCPKAM 242
Query: 583 LKLLQVALRCINQSPNERPSMNQVAVMI 610
+L+ C+ + +ERP Q+ I
Sbjct: 243 KRLMA---ECLKKKRDERPLFPQILASI 267
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 76 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 128
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + L I +M K
Sbjct: 129 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDE-KV 187
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 188 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 235
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 236 ----LISRLLKHNPSQRPMLREV 254
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 34/263 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 79 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 131
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + L I +M K
Sbjct: 132 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDE-KV 190
Query: 527 DVYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERML 583
D++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 191 DLWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD---- 238
Query: 584 KLLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 239 ----LISRLLKHNPSQRPMLREV 257
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 104/262 (39%), Gaps = 32/262 (12%)
Query: 354 LGRGKHGSLYRVVLDDG-LMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 21 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 80
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 81 YFHDATRVYLILEYAPLGTVYREL---QKLSKFDEQRTATYITELANALSYCHSK----R 133
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV-TENHDQSFLAQTSSLKINDISNQMCSTIKAD 527
+ H E I+++G V + ++ L T + K D
Sbjct: 134 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEXIEGRXHDEKVD 193
Query: 528 VYGFGVILLELLTGKLVQNNGFNLATWVHS---VVREEWTVEVFDEVLIAEAASEERMLK 584
++ GV+ E L GK F T+ + + R E+T F + E A +
Sbjct: 194 LWSLGVLCYEFLVGK----PPFEANTYQETYKRISRVEFTFPDF----VTEGARD----- 240
Query: 585 LLQVALRCINQSPNERPSMNQV 606
+ R + +P++RP + +V
Sbjct: 241 ---LISRLLKHNPSQRPXLREV 259
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 86/199 (43%), Gaps = 16/199 (8%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISS-EDFKNRMQKIDHVKHPNVLPPLAYYCS 412
+G G G++Y+ + + + ++ D + + F+N + + +H N+L + Y +
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGY-MT 102
Query: 413 KQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
K +V ++ SL+ LH E F + +A A+ + +H + I H
Sbjct: 103 KDNLAIVTQWCEGSSLYKHLHVQET--KFQMFQLIDIARQTAQGMDYLHAK----NIIHR 156
Query: 473 XXXXXXXXXXXXMEPCISEYGLIVTENH---DQSFLAQTSSL-----KINDISNQMCSTI 524
+ I ++GL ++ Q T S+ ++ + + +
Sbjct: 157 DMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSF 216
Query: 525 KADVYGFGVILLELLTGKL 543
++DVY +G++L EL+TG+L
Sbjct: 217 QSDVYSYGIVLYELMTGEL 235
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 116/270 (42%), Gaps = 34/270 (12%)
Query: 350 PAEL-----LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVL 404
P+EL +G G+ G ++ + +A+K +R+ ++S EDF + + + HP L
Sbjct: 6 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK-L 64
Query: 405 PPLAYYCSKQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEE 463
L C +Q + LV+E+ +G L + L ++ G F + L + V + +A
Sbjct: 65 VQLYGVCLEQAPICLVFEFMEHGCLSDYLR-TQRGL-FAAETLLGMCLDVCEGMAY---- 118
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS- 522
L E + H +S++G+ DQ + + + S ++ S
Sbjct: 119 LEEASVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF 178
Query: 523 ---TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAAS 578
+ K+DV+ FGV++ E+ + GK+ N N EV +++
Sbjct: 179 SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--------------SEVVEDISTGFRLY 224
Query: 579 EERM--LKLLQVALRCINQSPNERPSMNQV 606
+ R+ + Q+ C + P +RP+ +++
Sbjct: 225 KPRLASTHVYQIMNHCWKERPEDRPAFSRL 254
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 350 PAEL-----LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVL 404
P+EL +G G+ G ++ + +A+K +R+ ++S EDF + + + HP L
Sbjct: 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK-L 67
Query: 405 PPLAYYCSKQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEE 463
L C +Q + LV+E+ +G L + L ++ G F + L + V + +A
Sbjct: 68 VQLYGVCLEQAPICLVFEFMEHGCLSDYLR-TQRGL-FAAETLLGMCLDVCEGMAY---- 121
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS- 522
L E + H +S++G+ DQ + + + S ++ S
Sbjct: 122 LEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF 181
Query: 523 ---TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAAS 578
+ K+DV+ FGV++ E+ + GK+ N N EV +++
Sbjct: 182 SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--------------SEVVEDISTGFRLY 227
Query: 579 EERM--LKLLQVALRCINQSPNERPSMNQVAVMINNI 613
+ R+ + Q+ C + P +RP+ +++ + I
Sbjct: 228 KPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 264
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 350 PAEL-----LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVL 404
P+EL +G G+ G ++ + +A+K +R+ ++S EDF + + + HP L
Sbjct: 6 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK-L 64
Query: 405 PPLAYYCSKQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEE 463
L C +Q + LV+E+ +G L + L ++ G F + L + V + +A
Sbjct: 65 VQLYGVCLEQAPICLVFEFMEHGCLSDYLR-TQRGL-FAAETLLGMCLDVCEGMAY---- 118
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS- 522
L E + H +S++G+ DQ + + + S ++ S
Sbjct: 119 LEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF 178
Query: 523 ---TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAAS 578
+ K+DV+ FGV++ E+ + GK+ N N EV +++
Sbjct: 179 SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--------------SEVVEDISTGFRLY 224
Query: 579 EERM--LKLLQVALRCINQSPNERPSMNQVAVMINNI 613
+ R+ + Q+ C + P +RP+ +++ + I
Sbjct: 225 KPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEI 261
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 118/277 (42%), Gaps = 34/277 (12%)
Query: 350 PAEL-----LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVL 404
P+EL +G G+ G ++ + +A+K +R+ ++S EDF + + + HP L
Sbjct: 4 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK-L 62
Query: 405 PPLAYYCSKQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEE 463
L C +Q + LV+E+ +G L + L ++ G F + L + V + +A
Sbjct: 63 VQLYGVCLEQAPICLVFEFMEHGCLSDYLR-TQRGL-FAAETLLGMCLDVCEGMAY---- 116
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS- 522
L E + H +S++G+ DQ + + + S ++ S
Sbjct: 117 LEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF 176
Query: 523 ---TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAAS 578
+ K+DV+ FGV++ E+ + GK+ N N EV +++
Sbjct: 177 SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--------------SEVVEDISTGFRLY 222
Query: 579 EERM--LKLLQVALRCINQSPNERPSMNQVAVMINNI 613
+ R+ + Q+ C + P +RP+ +++ + I
Sbjct: 223 KPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEI 259
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 25/200 (12%)
Query: 354 LGRGKHGSLYRVV-LDDGLMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y + ++A+K L + E ++++++ H++HPN+L
Sbjct: 23 LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYN 82
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLL--HGSENGQ-SFDWGSRLRVAACVAKALALIHEELR 465
Y+ ++ L+ E+ P G L+ L HG + Q S + L A +IH +++
Sbjct: 83 YFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIK 142
Query: 466 EDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQM----C 521
+ + G E I+++G V H S + ++ + +M
Sbjct: 143 PENLLMGYKG----------ELKIADFGWSV---HAPSLRRRXMCGTLDYLPPEMIEGKT 189
Query: 522 STIKADVYGFGVILLELLTG 541
K D++ GV+ E L G
Sbjct: 190 HDEKVDLWCAGVLCYEFLVG 209
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 25/200 (12%)
Query: 354 LGRGKHGSLYRVV-LDDGLMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y + ++A+K L + E ++++++ H++HPN+L
Sbjct: 22 LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYN 81
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLL--HGSENGQ-SFDWGSRLRVAACVAKALALIHEELR 465
Y+ ++ L+ E+ P G L+ L HG + Q S + L A +IH +++
Sbjct: 82 YFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIK 141
Query: 466 EDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQM----C 521
+ + G E I+++G V H S + ++ + +M
Sbjct: 142 PENLLMGYKG----------ELKIADFGWSV---HAPSLRRRXMCGTLDYLPPEMIEGKT 188
Query: 522 STIKADVYGFGVILLELLTG 541
K D++ GV+ E L G
Sbjct: 189 HDEKVDLWCAGVLCYEFLVG 208
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 25/200 (12%)
Query: 354 LGRGKHGSLYRVV-LDDGLMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y + ++A+K L + E ++++++ H++HPN+L
Sbjct: 22 LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYN 81
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLL--HGSENGQ-SFDWGSRLRVAACVAKALALIHEELR 465
Y+ ++ L+ E+ P G L+ L HG + Q S + L A +IH +++
Sbjct: 82 YFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIK 141
Query: 466 EDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQM----C 521
+ + G E I+++G V H S + ++ + +M
Sbjct: 142 PENLLMGYKG----------ELKIADFGWSV---HAPSLRRRXMCGTLDYLPPEMIEGKT 188
Query: 522 STIKADVYGFGVILLELLTG 541
K D++ GV+ E L G
Sbjct: 189 HDEKVDLWCAGVLCYEFLVG 208
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 128/301 (42%), Gaps = 43/301 (14%)
Query: 340 KLKFEDLLRAPAE-----LLGRGKHGSLYRVVL--DDG--LMLAVKRLRDWSISSEDFKN 390
K K ED+L + +LG+G+ GS+ L +DG + +AVK L+ I+S D +
Sbjct: 12 KEKLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEE 71
Query: 391 RMQKIDHVK---HPNVLPPLAYYCSKQEK------LLVYEYQPNGSLFNLLHGSENGQS- 440
+++ +K HP+V + + K +++ + +G L L S G++
Sbjct: 72 FLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENP 131
Query: 441 FDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL---IVT 497
F+ + V V A + E L H M C++++GL I +
Sbjct: 132 FNLPLQTLVRFMVDIACGM--EYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYS 189
Query: 498 ENHDQSFLAQTSSLK---INDISNQMCSTIKADVYGFGVILLELLTGKLVQNNGFNLATW 554
++ + A +K + +++ + T+ +DV+ FGV + E++T G A
Sbjct: 190 GDYYRQGCASKLPVKWLALESLADNL-YTVHSDVWAFGVTMWEIMTRGQTPYAGIENA-- 246
Query: 555 VHSVVREEWTVEVFDEVLIAEAASE--ERMLKLLQVALRCINQSPNERPSMNQVAVMINN 612
E+++ ++ + E M ++ + +C + P +RPS + + + N
Sbjct: 247 -----------EIYNYLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELEN 295
Query: 613 I 613
I
Sbjct: 296 I 296
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 126/297 (42%), Gaps = 36/297 (12%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 7 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 66
Query: 396 DHVKHPNVLPP--LAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L ++ + D L+ + +
Sbjct: 67 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQI 124
Query: 454 AKALA------LIHEEL--REDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFL 505
K + IH L R + + + P EY + F
Sbjct: 125 CKGMEYLGTKRYIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFW 184
Query: 506 AQTSSLKINDISNQMCSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-EWT 564
SL + S + +DV+ FGV+L EL T ++ + A ++ + + +
Sbjct: 185 YAPESLTESKFS------VASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGNDKQGQ 236
Query: 565 VEVFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNIK 614
+ VF LI + R+ + + + C N + N+RPS +A+ ++ I+
Sbjct: 237 MIVFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 291
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 127/295 (43%), Gaps = 32/295 (10%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 65
Query: 396 DHVKHPNVLPP--LAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L ++ + D L+ + +
Sbjct: 66 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQI 123
Query: 454 AKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFL--AQTSSL 511
K + E L H I ++GL D+ F +
Sbjct: 124 CKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGES 179
Query: 512 KINDISNQMCS----TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-EWTVE 566
I + + + ++ +DV+ FGV+L EL T ++ + A ++ + + + +
Sbjct: 180 PIFWYAPESLTESKFSVASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGNDKQGQMI 237
Query: 567 VFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNIK 614
VF LI + R+ + + + C N + N+RPS +A+ ++ I+
Sbjct: 238 VFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 290
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 117/277 (42%), Gaps = 34/277 (12%)
Query: 350 PAEL-----LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVL 404
P+EL +G G+ G ++ + +A+K +R+ ++S EDF + + + HP L
Sbjct: 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK-L 65
Query: 405 PPLAYYCSKQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEE 463
L C +Q + LV E+ +G L + L ++ G F + L + V + +A
Sbjct: 66 VQLYGVCLEQAPICLVTEFMEHGCLSDYLR-TQRGL-FAAETLLGMCLDVCEGMAY---- 119
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS- 522
L E + H +S++G+ DQ + + + S ++ S
Sbjct: 120 LEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF 179
Query: 523 ---TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAAS 578
+ K+DV+ FGV++ E+ + GK+ N N EV +++
Sbjct: 180 SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--------------SEVVEDISTGFRLY 225
Query: 579 EERM--LKLLQVALRCINQSPNERPSMNQVAVMINNI 613
+ R+ + Q+ C + P +RP+ +++ + I
Sbjct: 226 KPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEI 262
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 119/277 (42%), Gaps = 34/277 (12%)
Query: 350 PAEL-----LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVL 404
P+EL +G G+ G ++ + +A+K +++ S+S +DF + + + HP ++
Sbjct: 26 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIKEGSMSEDDFIEEAEVMMKLSHPKLV 85
Query: 405 PPLAYYCSKQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEE 463
L C +Q + LV+E+ +G L + L ++ G F + L + V + +A
Sbjct: 86 Q-LYGVCLEQAPICLVFEFMEHGCLSDYLR-TQRGL-FAAETLLGMCLDVCEGMAY---- 138
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCS- 522
L E + H +S++G+ DQ + + + S ++ S
Sbjct: 139 LEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF 198
Query: 523 ---TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAAS 578
+ K+DV+ FGV++ E+ + GK+ N N EV +++
Sbjct: 199 SRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--------------SEVVEDISTGFRLY 244
Query: 579 EERM--LKLLQVALRCINQSPNERPSMNQVAVMINNI 613
+ R+ + Q+ C + P +RP+ +++ + I
Sbjct: 245 KPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEI 281
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 131/298 (43%), Gaps = 32/298 (10%)
Query: 339 NKLKFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRM 392
N +FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ +
Sbjct: 21 NMTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREI 80
Query: 393 QKIDHVKHPNVLP--PLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVA 450
+ + ++H N++ + Y ++ L+ EY P GSL + L ++ + D L+
Sbjct: 81 EILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL--QKHKERIDHIKLLQYT 138
Query: 451 ACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQT 508
+ + K + E L H I ++GL ++ ++ + + +
Sbjct: 139 SQICKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEP 194
Query: 509 SSLKINDISNQMCS----TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-EW 563
I + + + ++ +DV+ FGV+L EL T ++ + A ++ + + +
Sbjct: 195 GESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGNDKQG 252
Query: 564 TVEVFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNIK 614
+ VF LI + R+ + + + C N + N+RPS +A+ ++ I+
Sbjct: 253 QMIVFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 308
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 131/298 (43%), Gaps = 32/298 (10%)
Query: 339 NKLKFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRM 392
N +FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ +
Sbjct: 21 NMTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREI 80
Query: 393 QKIDHVKHPNVLP--PLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVA 450
+ + ++H N++ + Y ++ L+ EY P GSL + L ++ + D L+
Sbjct: 81 EILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYL--QKHKERIDHIKLLQYT 138
Query: 451 ACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQT 508
+ + K + E L H I ++GL ++ ++ + + +
Sbjct: 139 SQICKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEP 194
Query: 509 SSLKINDISNQMCS----TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-EW 563
I + + + ++ +DV+ FGV+L EL T ++ + A ++ + + +
Sbjct: 195 GESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGNDKQG 252
Query: 564 TVEVFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNIK 614
+ VF LI + R+ + + + C N + N+RPS +A+ ++ I+
Sbjct: 253 QMIVFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 308
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 21/201 (10%)
Query: 354 LGRGKHGSLYRVVL-DDGLMLAVKRLRDWSISSEDFKNRMQKID---HVKHPNVLPPLAY 409
+G G +G ++ DG +L K L S++ + + + +++ +KHPN++ Y
Sbjct: 14 IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIV---RY 70
Query: 410 YCSKQEK-----LLVYEYQPNGSLFNLL-HGSENGQSFDWGSRLRVAACVAKALALIHEE 463
Y ++ +V EY G L +++ G++ Q D LRV + AL H
Sbjct: 71 YDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR- 129
Query: 464 LREDG---IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSF---LAQTSSLKINDIS 517
R DG + H + ++GL NHD SF T +
Sbjct: 130 -RSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQM 188
Query: 518 NQMCSTIKADVYGFGVILLEL 538
N+M K+D++ G +L EL
Sbjct: 189 NRMSYNEKSDIWSLGCLLYEL 209
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 111/266 (41%), Gaps = 28/266 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG G+ G + +A+K +++ S+S ++F + + ++ H ++ L C+K
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQ-LYGVCTK 90
Query: 414 QEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
Q + ++ EY NG L N L E F L + V +A+ E L H
Sbjct: 91 QRPIFIITEYMANGCLLNYLR--EMRHRFQTQQLLEMCKDVCEAM----EYLESKQFLHR 144
Query: 473 XXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKINDISNQMCSTI--KADV 528
+S++GL V ++ + S + ++ + M S K+D+
Sbjct: 145 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSVGSKFPVRWSPPEVLMYSKFSSKSDI 204
Query: 529 YGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
+ FGV++ E+ + GK+ N T H + ++ L +E K+
Sbjct: 205 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQ----GLRLYRPHLASE--------KVYT 252
Query: 588 VALRCINQSPNERPSMNQVAVMINNI 613
+ C ++ +ERP+ ++++NI
Sbjct: 253 IMYSCWHEKADERPTFK---ILLSNI 275
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 21/201 (10%)
Query: 354 LGRGKHGSLYRVVL-DDGLMLAVKRLRDWSISSEDFKNRMQKID---HVKHPNVLPPLAY 409
+G G +G ++ DG +L K L S++ + + + +++ +KHPN++ Y
Sbjct: 14 IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIV---RY 70
Query: 410 YCSKQEK-----LLVYEYQPNGSLFNLL-HGSENGQSFDWGSRLRVAACVAKALALIHEE 463
Y ++ +V EY G L +++ G++ Q D LRV + AL H
Sbjct: 71 YDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR- 129
Query: 464 LREDG---IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSF---LAQTSSLKINDIS 517
R DG + H + ++GL NHD SF T +
Sbjct: 130 -RSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQM 188
Query: 518 NQMCSTIKADVYGFGVILLEL 538
N+M K+D++ G +L EL
Sbjct: 189 NRMSYNEKSDIWSLGCLLYEL 209
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 351 AELLGRGKHGSLYRVV-LDDGLMLAVKRLRDWSISS-EDFKNRMQKIDHVKHPNVLPPLA 408
E+LG G+ G +++ GL LA K ++ + E+ KN + ++ + H N++
Sbjct: 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYD 153
Query: 409 YYCSKQEKLLVYEYQPNGSLFN 430
+ SK + +LV EY G LF+
Sbjct: 154 AFESKNDIVLVMEYVDGGELFD 175
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 130/295 (44%), Gaps = 32/295 (10%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 13 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 72
Query: 396 DHVKHPNVLP--PLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L ++ + D L+ + +
Sbjct: 73 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQI 130
Query: 454 AKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSL 511
K + E L H I ++GL ++ ++ + + +
Sbjct: 131 CKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 186
Query: 512 KINDISNQMCS----TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-EWTVE 566
I + + + ++ +DV+ FGV+L EL T ++ + A ++ + + + +
Sbjct: 187 PIFWYAPESLTESKFSVASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGNDKQGQMI 244
Query: 567 VFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNIK 614
VF LI + R+ + + + C N + N+RPS +A+ ++ I+
Sbjct: 245 VFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 297
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 124/301 (41%), Gaps = 44/301 (14%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 9 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 68
Query: 396 DHVKHPNVLPP--LAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L + + D L+ + +
Sbjct: 69 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQA--HAERIDHIKLLQYTSQI 126
Query: 454 AKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQS---------- 503
K + E L H I ++GL D+
Sbjct: 127 CKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 504 --FLAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE 561
F SL + S + +DV+ FGV+L EL T ++ + A ++ + +
Sbjct: 183 PIFWYAPESLTESKFS------VASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGND 234
Query: 562 -EWTVEVFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNI 613
+ + VF LI + R+ + + + C N + N+RPS +A+ ++ I
Sbjct: 235 KQGQMIVFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQI 292
Query: 614 K 614
+
Sbjct: 293 R 293
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 21/201 (10%)
Query: 354 LGRGKHGSLYRVVL-DDGLMLAVKRLRDWSISSEDFKNRMQKID---HVKHPNVLPPLAY 409
+G G +G ++ DG +L K L S++ + + + +++ +KHPN++ Y
Sbjct: 14 IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIV---RY 70
Query: 410 YCSKQEK-----LLVYEYQPNGSLFNLL-HGSENGQSFDWGSRLRVAACVAKALALIHEE 463
Y ++ +V EY G L +++ G++ Q D LRV + AL H
Sbjct: 71 YDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR- 129
Query: 464 LREDG---IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQ---TSSLKINDIS 517
R DG + H + ++GL NHD+ F + T +
Sbjct: 130 -RSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDEDFAKEFVGTPYYMSPEQM 188
Query: 518 NQMCSTIKADVYGFGVILLEL 538
N+M K+D++ G +L EL
Sbjct: 189 NRMSYNEKSDIWSLGCLLYEL 209
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 15/195 (7%)
Query: 354 LGRGKHGSLYRVV-LDDGLMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 20 LGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 79
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 80 YFHDATRVYLILEYAPLGTVYREL---QKLSRFDEQRTATYITELANALSYCHSK----R 132
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 133 VIHRDIKPENLLLGSNGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDE-KV 191
Query: 527 DVYGFGVILLELLTG 541
D++ GV+ E L G
Sbjct: 192 DLWSLGVLCYEFLVG 206
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 15/195 (7%)
Query: 354 LGRGKHGSLYRVV-LDDGLMLAVKRLRDWSISSEDFKNRMQK----IDHVKHPNVLPPLA 408
LG+GK G++Y +LA+K L + ++++++ H++HPN+L
Sbjct: 20 LGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 79
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
Y+ L+ EY P G+++ L + FD +A AL+ H +
Sbjct: 80 YFHDATRVYLILEYAPLGTVYREL---QKLSRFDEQRTATYITELANALSYCHSK----R 132
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIV--TENHDQSFLAQTSSLKINDISNQMCSTIKA 526
+ H E I+++G V + + L I +M K
Sbjct: 133 VIHRDIKPENLLLGSNGELKIADFGWSVHAPSSRRDTLCGTLDYLPPEMIEGRMHDE-KV 191
Query: 527 DVYGFGVILLELLTG 541
D++ GV+ E L G
Sbjct: 192 DLWSLGVLCYEFLVG 206
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 130/295 (44%), Gaps = 32/295 (10%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 65
Query: 396 DHVKHPNVLPP--LAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L ++ + D L+ + +
Sbjct: 66 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQI 123
Query: 454 AKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSL 511
K + E L H I ++GL ++ ++ + + +
Sbjct: 124 CKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 179
Query: 512 KINDISNQMCS----TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-EWTVE 566
I + + + ++ +DV+ FGV+L EL T ++ + A ++ + + + +
Sbjct: 180 PIFWYAPESLTESKFSVASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGNDKQGQMI 237
Query: 567 VFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNIK 614
VF LI + R+ + + + C N + N+RPS +A+ ++ I+
Sbjct: 238 VFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 290
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 130/295 (44%), Gaps = 32/295 (10%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 9 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 68
Query: 396 DHVKHPNVLP--PLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L ++ + D L+ + +
Sbjct: 69 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQI 126
Query: 454 AKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSL 511
K + E L H I ++GL ++ ++ + + +
Sbjct: 127 CKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 512 KINDISNQMCS----TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-EWTVE 566
I + + + ++ +DV+ FGV+L EL T ++ + A ++ + + + +
Sbjct: 183 PIFWYAPESLTESKFSVASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGNDKQGQMI 240
Query: 567 VFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNIK 614
VF LI + R+ + + + C N + N+RPS +A+ ++ I+
Sbjct: 241 VFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 293
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 14/198 (7%)
Query: 353 LLGRGKHGSLYRV-VLDDGLMLAVKRLRDWSISSEDFKNRMQ---KID-HVKHPNVLPPL 407
LLG+G +YR + GL +A+K + ++ R+Q KI +KHP++L
Sbjct: 18 LLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELY 77
Query: 408 AYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELRED 467
Y+ LV E NG + L + F + + +H
Sbjct: 78 NYFEDSNYVYLVLEMCHNGEMNRYL--KNRVKPFSENEARHFMHQIITGMLYLHSH---- 131
Query: 468 GIAHGXXXXXXXXXXXXMEPCISEYGLI--VTENHDQSF-LAQTSSLKINDISNQMCSTI 524
GI H M I+++GL + H++ + L T + +I+ + +
Sbjct: 132 GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGL 191
Query: 525 KADVYGFGVILLELLTGK 542
++DV+ G + LL G+
Sbjct: 192 ESDVWSLGCMFYTLLIGR 209
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 130/295 (44%), Gaps = 32/295 (10%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 11 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 70
Query: 396 DHVKHPNVLP--PLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L ++ + D L+ + +
Sbjct: 71 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQI 128
Query: 454 AKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSL 511
K + E L H I ++GL ++ ++ + + +
Sbjct: 129 CKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 184
Query: 512 KINDISNQMCS----TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-EWTVE 566
I + + + ++ +DV+ FGV+L EL T ++ + A ++ + + + +
Sbjct: 185 PIFWYAPESLTESKFSVASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGNDKQGQMI 242
Query: 567 VFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNIK 614
VF LI + R+ + + + C N + N+RPS +A+ ++ I+
Sbjct: 243 VFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 295
>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 337
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 38/212 (17%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAY---- 409
+G+G++G ++ G +AVK +S + + + ++H N+L +A
Sbjct: 45 IGKGRYGEVWMGKWR-GEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKG 103
Query: 410 YCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELR---- 465
S + L+ +Y NGSL++ L + + D S L++A L +H E+
Sbjct: 104 TGSWTQLYLITDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQG 159
Query: 466 EDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDIS-------- 517
+ IAH CI++ GL V F++ T+ + I +
Sbjct: 160 KPAIAHRDLKSKNILVKKNGTCCIADLGLAV------KFISDTNEVDIPPNTRVGTKRYM 213
Query: 518 -----------NQMCSTIKADVYGFGVILLEL 538
N S I AD+Y FG+IL E+
Sbjct: 214 PPEVLDESLNRNHFQSYIMADMYSFGLILWEV 245
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 130/295 (44%), Gaps = 32/295 (10%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 12 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 71
Query: 396 DHVKHPNVLPP--LAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L ++ + D L+ + +
Sbjct: 72 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQI 129
Query: 454 AKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSL 511
K + E L H I ++GL ++ ++ + + +
Sbjct: 130 CKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 185
Query: 512 KINDISNQMCS----TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-EWTVE 566
I + + + ++ +DV+ FGV+L EL T ++ + A ++ + + + +
Sbjct: 186 PIFWYAPESLTESKFSVASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGNDKQGQMI 243
Query: 567 VFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNIK 614
VF LI + R+ + + + C N + N+RPS +A+ ++ I+
Sbjct: 244 VFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 296
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 125/301 (41%), Gaps = 44/301 (14%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 65
Query: 396 DHVKHPNVLPP--LAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L ++ + D L+ + +
Sbjct: 66 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQI 123
Query: 454 AKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQS---------- 503
K + E L H I ++GL D+
Sbjct: 124 CKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 179
Query: 504 --FLAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE 561
F SL + S + +DV+ FGV+L EL T ++ + A ++ + +
Sbjct: 180 PIFWYAPESLTESKFS------VASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGND 231
Query: 562 -EWTVEVFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNI 613
+ + VF LI + R+ + + + C N + N+RPS +A+ ++ I
Sbjct: 232 KQGQMIVFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQI 289
Query: 614 K 614
+
Sbjct: 290 R 290
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 125/301 (41%), Gaps = 44/301 (14%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 37 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 96
Query: 396 DHVKHPNVLPP--LAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L ++ + D L+ + +
Sbjct: 97 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQI 154
Query: 454 AKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQS---------- 503
K + E L H I ++GL D+
Sbjct: 155 CKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 210
Query: 504 --FLAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE 561
F SL + S + +DV+ FGV+L EL T ++ + A ++ + +
Sbjct: 211 PIFWYAPESLTESKFS------VASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGND 262
Query: 562 -EWTVEVFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNI 613
+ + VF LI + R+ + + + C N + N+RPS +A+ ++ I
Sbjct: 263 KQGQMIVFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQI 320
Query: 614 K 614
+
Sbjct: 321 R 321
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 130/295 (44%), Gaps = 32/295 (10%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 10 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 69
Query: 396 DHVKHPNVLPP--LAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L ++ + D L+ + +
Sbjct: 70 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQI 127
Query: 454 AKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSL 511
K + E L H I ++GL ++ ++ + + +
Sbjct: 128 CKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 183
Query: 512 KINDISNQMCS----TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-EWTVE 566
I + + + ++ +DV+ FGV+L EL T ++ + A ++ + + + +
Sbjct: 184 PIFWYAPESLTESKFSVASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGNDKQGQMI 241
Query: 567 VFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNIK 614
VF LI + R+ + + + C N + N+RPS +A+ ++ I+
Sbjct: 242 VFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 294
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 93/214 (43%), Gaps = 34/214 (15%)
Query: 352 ELLGRGKHGSLYRV-VLDDGLMLAVKRLRD---WSISSEDFKNRMQKIDHVKHPNVLPPL 407
E+ RG+ G +++ +++D + + + L+D W E F +KH N+L +
Sbjct: 21 EIKARGRFGCVWKAQLMNDFVAVKIFPLQDKQSWQSEREIFST-----PGMKHENLLQFI 75
Query: 408 AYYCS----KQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEE 463
A + E L+ + GSL + L G W VA +++ L+ +HE+
Sbjct: 76 AAEKRGSNLEVELWLITAFHDKGSLTDYL----KGNIITWNELCHVAETMSRGLSYLHED 131
Query: 464 L---REDG----IAHGXXXXXXXXXXXXMEPCISEYGLIVT--------ENHDQSFLAQT 508
+ R +G IAH + ++++GL V + H Q +
Sbjct: 132 VPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRY 191
Query: 509 SSLKIND--ISNQMCSTIKADVYGFGVILLELLT 540
+ ++ + I+ Q + ++ D+Y G++L EL++
Sbjct: 192 MAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVS 225
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 130/295 (44%), Gaps = 32/295 (10%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 4 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 63
Query: 396 DHVKHPNVLPP--LAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L ++ + D L+ + +
Sbjct: 64 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQI 121
Query: 454 AKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSL 511
K + E L H I ++GL ++ ++ + + +
Sbjct: 122 CKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 177
Query: 512 KINDISNQMCS----TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-EWTVE 566
I + + + ++ +DV+ FGV+L EL T ++ + A ++ + + + +
Sbjct: 178 PIFWYAPESLTESKFSVASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGNDKQGQMI 235
Query: 567 VFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNIK 614
VF LI + R+ + + + C N + N+RPS +A+ ++ I+
Sbjct: 236 VFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 288
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 130/295 (44%), Gaps = 32/295 (10%)
Query: 342 KFEDLLRAPAELLGRGKHGSL----YRVVLDD-GLMLAVKRLRDWSISS-EDFKNRMQKI 395
+FE+ + LG+G GS+ Y + D+ G ++AVK+L+ + DF+ ++ +
Sbjct: 5 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 64
Query: 396 DHVKHPNVLPP--LAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
++H N++ + Y ++ L+ EY P GSL + L ++ + D L+ + +
Sbjct: 65 KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ--KHKERIDHIKLLQYTSQI 122
Query: 454 AKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSL 511
K + E L H I ++GL ++ ++ + + +
Sbjct: 123 CKGM----EYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 178
Query: 512 KINDISNQMCS----TIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVRE-EWTVE 566
I + + + ++ +DV+ FGV+L EL T ++ + A ++ + + + +
Sbjct: 179 PIFWYAPESLTESKFSVASDVWSFGVVLYELFT--YIEKSKSPPAEFMRMIGNDKQGQMI 236
Query: 567 VFDEVLIAEAASEERMLK-------LLQVALRCINQSPNERPSMNQVAVMINNIK 614
VF LI + R+ + + + C N + N+RPS +A+ ++ I+
Sbjct: 237 VFH--LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 289
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 25/202 (12%)
Query: 352 ELLGRGKHGSLYRVV-LDDGLMLAVKRLR-DWSISSEDFKNRMQKIDHVKHPNVLPPLAY 409
E +G+G G++Y + + G +A++++ E N + + K+PN++ L
Sbjct: 26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85
Query: 410 YCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKAL------ALIHEE 463
Y E +V EY GSL +++ + D G V +AL +IH +
Sbjct: 86 YLVGDELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSNQVIHRD 141
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGL---IVTENHDQSFLAQTSSLKINDISNQM 520
++ D I G ++++G I E +S + T ++ +
Sbjct: 142 IKSDNILLGMDGSVK----------LTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRK 191
Query: 521 CSTIKADVYGFGVILLELLTGK 542
K D++ G++ +E++ G+
Sbjct: 192 AYGPKVDIWSLGIMAIEMIEGE 213
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 92 TSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRL 151
+++ QS+ L L I T ++ L LY+ N+++ P L+ L NL+ L
Sbjct: 107 SAIAGLQSIKTLDLTSTQI--TDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 162
Query: 152 DISNNNFSSELPDLSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNNLSGPVPGVN 211
I NN + P L+ +S L T A++N++ P NL++ ++ +N +S P N
Sbjct: 163 SIGNNQVNDLTP-LANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSPLAN 221
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 88 ILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLP-DSLSKLN 146
I D T + +L VL L+ N I ++ L +L +G N+++ P +LSKL
Sbjct: 125 ITDVTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNNQVNDLTPLANLSKLT 182
Query: 147 NLKRLDISNNNFSSELPDLSRISGLLTFFAENNQLRGGIPEFDFSNL 193
L+ +++N S++ L+ + L+ ++NQ+ P + SNL
Sbjct: 183 TLR----ADDNKISDISPLASLPNLIEVHLKDNQISDVSPLANLSNL 225
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 25/202 (12%)
Query: 352 ELLGRGKHGSLYRVV-LDDGLMLAVKRLR-DWSISSEDFKNRMQKIDHVKHPNVLPPLAY 409
E +G+G G++Y + + G +A++++ E N + + K+PN++ L
Sbjct: 26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85
Query: 410 YCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKAL------ALIHEE 463
Y E +V EY GSL +++ + D G V +AL +IH +
Sbjct: 86 YLVGDELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSNQVIHRD 141
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGL---IVTENHDQSFLAQTSSLKINDISNQM 520
++ D I G ++++G I E +S + T ++ +
Sbjct: 142 IKSDNILLGMDGSVK----------LTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK 191
Query: 521 CSTIKADVYGFGVILLELLTGK 542
K D++ G++ +E++ G+
Sbjct: 192 AYGPKVDIWSLGIMAIEMIEGE 213
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 25/202 (12%)
Query: 352 ELLGRGKHGSLYRVV-LDDGLMLAVKRLR-DWSISSEDFKNRMQKIDHVKHPNVLPPLAY 409
E +G+G G++Y + + G +A++++ E N + + K+PN++ L
Sbjct: 27 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 86
Query: 410 YCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKAL------ALIHEE 463
Y E +V EY GSL +++ + D G V +AL +IH +
Sbjct: 87 YLVGDELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSNQVIHRD 142
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGL---IVTENHDQSFLAQTSSLKINDISNQM 520
++ D I G ++++G I E +S + T ++ +
Sbjct: 143 IKSDNILLGMDGSVK----------LTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRK 192
Query: 521 CSTIKADVYGFGVILLELLTGK 542
K D++ G++ +E++ G+
Sbjct: 193 AYGPKVDIWSLGIMAIEMIEGE 214
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 96 KTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISN 155
K +L L L EN + LT+LY+ N+L KL NL RLD+ N
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 156 NNFSSELPD--LSRISGLLTFFAENNQLRGGIPEFDFSNL 193
N S LP+ +++ L +NQL+ +P+ F L
Sbjct: 167 NQLQS-LPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRL 204
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 12/114 (10%)
Query: 110 IAGTVSQEISNCKQLT---HLYVGRNKLSGNLPDSL-SKLNNLKRLDISNNNFSSELPD- 164
+ G +IS K+LT +L + N+L LP+ + KL NLK L + N S LPD
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDG 127
Query: 165 -LSRISGLLTFFAENNQLRGGIPE--FD-FSNLLQFNVSNNNLSGPVPGVNGRL 214
+++ L + +NQL+ +P+ FD +NL + ++ NN L GV +L
Sbjct: 128 VFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 110/266 (41%), Gaps = 28/266 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG G+ G + +A+K +++ S+S ++F + + ++ H ++ L C+K
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQ-LYGVCTK 90
Query: 414 QEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
Q + ++ EY NG L N L E F L + V +A+ E L H
Sbjct: 91 QRPIFIITEYMANGCLLNYLR--EMRHRFQTQQLLEMCKDVCEAM----EYLESKQFLHR 144
Query: 473 XXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKINDISNQMCSTI--KADV 528
+S++GL V ++ S + ++ + M S K+D+
Sbjct: 145 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 204
Query: 529 YGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
+ FGV++ E+ + GK+ N T H + ++ L +E K+
Sbjct: 205 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQ----GLRLYRPHLASE--------KVYT 252
Query: 588 VALRCINQSPNERPSMNQVAVMINNI 613
+ C ++ +ERP+ ++++NI
Sbjct: 253 IMYSCWHEKADERPTFK---ILLSNI 275
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 117 EISNCKQLTHLYVGRNKLS--GNLPDSLSKLNNLKRLDISNNNFSSELPDLSRISGLLTF 174
E+ N LT +Y N L +LP SL + ++ NN ELP+L + L T
Sbjct: 190 ELQNLPFLTAIYADNNSLKKLPDLPLSLESI-------VAGNNILEELPELQNLPFLTTI 242
Query: 175 FAENNQLRGGIPEFDFSNLLQFNVSNNNLSG 205
+A+NN L+ +P+ S L NV +N L+
Sbjct: 243 YADNNLLK-TLPDLPPS-LEALNVRDNYLTD 271
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 115
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENI--------MLLDRNVPKPRIKIIDFGLAHK 167
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T + +I N ++AD++ GVI LL+G
Sbjct: 168 IDFGNEFKNIFGTPAFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 109/266 (40%), Gaps = 28/266 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG G+ G + +A+K +++ S+S ++F + + ++ H L L C+K
Sbjct: 23 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK-LVQLYGVCTK 81
Query: 414 QEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
Q + ++ EY NG L N L E F L + V +A+ E L H
Sbjct: 82 QRPIFIITEYMANGCLLNYLR--EMRHRFQTQQLLEMCKDVCEAM----EYLESKQFLHR 135
Query: 473 XXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKINDISNQMCSTI--KADV 528
+S++GL V ++ S + ++ + M S K+D+
Sbjct: 136 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 195
Query: 529 YGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
+ FGV++ E+ + GK+ N T H + ++ L +E K+
Sbjct: 196 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQ----GLRLYRPHLASE--------KVYT 243
Query: 588 VALRCINQSPNERPSMNQVAVMINNI 613
+ C ++ +ERP+ ++++NI
Sbjct: 244 IMYSCWHEKADERPTFK---ILLSNI 266
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 115
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENI--------MLLDRNVPKPRIKIIDFGLAHK 167
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 115
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENI--------MLLDRNVPKPRIKIIDFGLAHK 167
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 115
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENI--------MLLDRNVPKPRIKIIDFGLAHK 167
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 87 GILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSL-SKL 145
G+ D K L LSL +N I +LT LY+ NKL +LP+ + KL
Sbjct: 46 GVFD-----KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKL 99
Query: 146 NNLKRLDISNNNFSSELPD--LSRISGLLTFFAENNQLRGGIPEFDF 190
LK L + N S +PD R++ L + N P D+
Sbjct: 100 TQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 25/202 (12%)
Query: 352 ELLGRGKHGSLYRVV-LDDGLMLAVKRLR-DWSISSEDFKNRMQKIDHVKHPNVLPPLAY 409
E +G+G G++Y + + G +A++++ E N + + K+PN++ L
Sbjct: 26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85
Query: 410 YCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKAL------ALIHEE 463
Y E +V EY GSL +++ + D G V +AL +IH +
Sbjct: 86 YLVGDELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSNQVIHRD 141
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGL---IVTENHDQSFLAQTSSLKINDISNQM 520
++ D I G ++++G I E +S + T ++ +
Sbjct: 142 IKSDNILLGMDGSVK----------LTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRK 191
Query: 521 CSTIKADVYGFGVILLELLTGK 542
K D++ G++ +E++ G+
Sbjct: 192 AYGPKVDIWSLGIMAIEMIEGE 213
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 92 TSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRL 151
+++ QS+ L L I T ++ L LY+ N+++ P L+ L NL+ L
Sbjct: 101 SAIAGLQSIKTLDLTSTQI--TDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 156
Query: 152 DISNNNFSSELPDLSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNNLSGPVPGVN 211
I N S +L L+ +S L T A++N++ P NL++ ++ NN +S P N
Sbjct: 157 SIGNAQVS-DLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLAN 215
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 88 ILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLP-DSLSKLN 146
I D T + +L VL L+ N I ++ L +L +G ++S P +LSKL
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176
Query: 147 NLKRLDISNNNFSSELPDLSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNNLS 204
LK +++N S++ L+ + L+ +NNQ+ P + SNL ++N ++
Sbjct: 177 TLK----ADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 109/266 (40%), Gaps = 28/266 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG G+ G + +A+K +++ S+S ++F + + ++ H L L C+K
Sbjct: 16 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK-LVQLYGVCTK 74
Query: 414 QEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
Q + ++ EY NG L N L E F L + V +A+ E L H
Sbjct: 75 QRPIFIITEYMANGCLLNYLR--EMRHRFQTQQLLEMCKDVCEAM----EYLESKQFLHR 128
Query: 473 XXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKINDISNQMCSTI--KADV 528
+S++GL V ++ S + ++ + M S K+D+
Sbjct: 129 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 188
Query: 529 YGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
+ FGV++ E+ + GK+ N T H + ++ L +E K+
Sbjct: 189 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQ----GLRLYRPHLASE--------KVYT 236
Query: 588 VALRCINQSPNERPSMNQVAVMINNI 613
+ C ++ +ERP+ ++++NI
Sbjct: 237 IMYSCWHEKADERPTFK---ILLSNI 259
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 109/266 (40%), Gaps = 28/266 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG G+ G + +A+K +++ S+S ++F + + ++ H L L C+K
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK-LVQLYGVCTK 75
Query: 414 QEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
Q + ++ EY NG L N L E F L + V +A+ E L H
Sbjct: 76 QRPIFIITEYMANGCLLNYLR--EMRHRFQTQQLLEMCKDVCEAM----EYLESKQFLHR 129
Query: 473 XXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKINDISNQMCSTI--KADV 528
+S++GL V ++ S + ++ + M S K+D+
Sbjct: 130 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 189
Query: 529 YGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
+ FGV++ E+ + GK+ N T H + ++ L +E K+
Sbjct: 190 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQ----GLRLYRPHLASE--------KVYT 237
Query: 588 VALRCINQSPNERPSMNQVAVMINNI 613
+ C ++ +ERP+ ++++NI
Sbjct: 238 IMYSCWHEKADERPTFK---ILLSNI 260
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNF 158
+L L L+ N + + + +LT+L +G N+L KL +LK L + NN
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 159 SSELPD--LSRISGLLTFFAENNQLRGGIPEFDFSNL 193
+P+ +++ L T +NNQL+ +PE F +L
Sbjct: 170 -KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSL 204
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 109/266 (40%), Gaps = 28/266 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG G+ G + +A+K +++ S+S ++F + + ++ H L L C+K
Sbjct: 12 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK-LVQLYGVCTK 70
Query: 414 QEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
Q + ++ EY NG L N L E F L + V +A+ E L H
Sbjct: 71 QRPIFIITEYMANGCLLNYLR--EMRHRFQTQQLLEMCKDVCEAM----EYLESKQFLHR 124
Query: 473 XXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKINDISNQMCSTI--KADV 528
+S++GL V ++ S + ++ + M S K+D+
Sbjct: 125 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 184
Query: 529 YGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
+ FGV++ E+ + GK+ N T H + ++ L +E K+
Sbjct: 185 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQ----GLRLYRPHLASE--------KVYT 232
Query: 588 VALRCINQSPNERPSMNQVAVMINNI 613
+ C ++ +ERP+ ++++NI
Sbjct: 233 IMYSCWHEKADERPTFK---ILLSNI 255
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 115
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENIM--------LLDRNVPKPRIKIIDFGLAHK 167
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 83/202 (41%), Gaps = 25/202 (12%)
Query: 352 ELLGRGKHGSLYRVV-LDDGLMLAVKRLR-DWSISSEDFKNRMQKIDHVKHPNVLPPLAY 409
E +G+G G++Y + + G +A++++ E N + + K+PN++ L
Sbjct: 27 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 86
Query: 410 YCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKAL------ALIHEE 463
Y E +V EY GSL +++ + D G V +AL +IH
Sbjct: 87 YLVGDELWVVMEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSNQVIHRN 142
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGL---IVTENHDQSFLAQTSSLKINDISNQM 520
++ D I G ++++G I E +S + T ++ +
Sbjct: 143 IKSDNILLGMDGSVK----------LTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK 192
Query: 521 CSTIKADVYGFGVILLELLTGK 542
K D++ G++ +E++ G+
Sbjct: 193 AYGPKVDIWSLGIMAIEMIEGE 214
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 115
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENI--------MLLDRNVPKPRIKIIDFGLAHK 167
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 115
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENIM--------LLDRNVPKPRIKIIDFGLAHK 167
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 107/271 (39%), Gaps = 59/271 (21%)
Query: 373 LAVKRLRDWSISSE--DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLL-VYEYQPNGSLF 429
+AVK L++ + SE D + + V HP+V+ L CS+ LL + EY GSL
Sbjct: 56 VAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK-LYGACSQDGPLLLIVEYAKYGSLR 114
Query: 430 NLLHGSE---------------------NGQSFDWGSRLRVAACVAKALALIHEELREDG 468
L S + ++ G + A +++ + + L E
Sbjct: 115 GFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGM----QYLAEMK 170
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSS------LKINDISNQMCS 522
+ H + IS++GL + S++ ++ + I + + + +
Sbjct: 171 LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYT 230
Query: 523 TIKADVYGFGVILLELLT------GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEA 576
T ++DV+ FGV+L E++T + FNL H + R +
Sbjct: 231 T-QSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMER-------------PDN 276
Query: 577 ASEERMLKLLQVALRCINQSPNERPSMNQVA 607
SEE + ++ L+C Q P++RP ++
Sbjct: 277 CSEE----MYRLMLQCWKQEPDKRPVFADIS 303
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 115
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENI--------MLLDRNVPKPRIKIIDFGLAHK 167
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 115
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENI--------MLLDRNVPKPRIKIIDFGLAHK 167
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 115
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENI--------MLLDRNVPKPRIKIIDFGLAHK 167
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 43/260 (16%)
Query: 373 LAVKR--LRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFN 430
+A+KR L S ++ +Q + HPN++ + K E LV + GS+ +
Sbjct: 43 VAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLD 102
Query: 431 LLH-----GSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXM 485
++ G D + + V + L +H+ +G H
Sbjct: 103 IIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHK----NGQIHRDVKAGNILLGEDG 158
Query: 486 EPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCST----------------IKADVY 529
I+++G+ +FLA + N + T KAD++
Sbjct: 159 SVQIADFGV-------SAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIW 211
Query: 530 GFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVE--VFD-EVLIAEAASEERMLKLL 586
FG+ +EL TG + + + ++ + ++E V D E+L S +M+ L
Sbjct: 212 SFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISL- 270
Query: 587 QVALRCINQSPNERPSMNQV 606
C+ + P +RP+ ++
Sbjct: 271 -----CLQKDPEKRPTAAEL 285
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 55 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 114
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 115 ATEFLKQILNGVYYLHSLQIAHFDLKPENIM--------LLDRNVPKPRIKIIDFGLAHK 166
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 167 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 212
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 82/208 (39%), Gaps = 25/208 (12%)
Query: 351 AELLGRGKHGSLYRVV-LDDGLMLAVKRLRDWSISSE-DFKNRMQKIDHVKHPNVLPPLA 408
E+LG+G G +V + G ++ +K L + ++ F ++ + ++HPNVL +
Sbjct: 15 GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIG 74
Query: 409 YYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDG 468
+ + EY G+L ++ ++ + W R+ A +A +A +H
Sbjct: 75 VLYKDKRLNFITEYIKGGTLRGIIKSMDS--QYPWSQRVSFAKDIASGMAYLHSM----N 128
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKIND------------- 515
I H ++++GL +++ SLK D
Sbjct: 129 IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYW 188
Query: 516 ----ISNQMCSTIKADVYGFGVILLELL 539
+ N K DV+ FG++L E++
Sbjct: 189 MAPEMINGRSYDEKVDVFSFGIVLCEII 216
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 55 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 114
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 115 ATEFLKQILNGVYYLHSLQIAHFDLKPENIM--------LLDRNVPKPRIKIIDFGLAHK 166
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 167 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 212
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 41/221 (18%)
Query: 402 NVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFD--WGSRLRVAACVAKALAL 459
N + P+ K + EY NG+L++L+H Q D W R+ + +AL+
Sbjct: 76 NFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYW----RLFRQILEALSY 131
Query: 460 IHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQ 519
IH + GI H I ++GL H + + S + S+
Sbjct: 132 IHSQ----GIIHRDLKPMNIFIDESRNVKIGDFGL-AKNVHRSLDILKLDSQNLPGSSDN 186
Query: 520 MCSTI-------------------KADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVR 560
+ S I K D+Y G+I E++ N+ + SV
Sbjct: 187 LTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSV-- 244
Query: 561 EEWTVEVFDEVLIAEAASEERMLKLLQVALRCINQSPNERP 601
++E + + E+++++LL I+ PN+RP
Sbjct: 245 ---SIEFPPDFDDNKMKVEKKIIRLL------IDHDPNKRP 276
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 19/167 (11%)
Query: 386 EDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGS 445
++F+ + + ++ HPN++ Y +V E+ P G L++ L + W
Sbjct: 68 QEFQREVFIMSNLNHPNIVK--LYGLMHNPPRMVMEFVPCGDLYHRL--LDKAHPIKWSV 123
Query: 446 RLRVAACVAKAL--------ALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVT 497
+LR+ +A + ++H +LR I ++++GL
Sbjct: 124 KLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAK-----VADFGLSQQ 178
Query: 498 ENHDQS-FLAQTSSLKINDI-SNQMCSTIKADVYGFGVILLELLTGK 542
H S L + I + + T KAD Y F +IL +LTG+
Sbjct: 179 SVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGE 225
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEE 115
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENIM--------LLDRNVPKPRIKIIDFGLAHK 167
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 43/260 (16%)
Query: 373 LAVKR--LRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFN 430
+A+KR L S ++ +Q + HPN++ + K E LV + GS+ +
Sbjct: 38 VAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLD 97
Query: 431 LLH-----GSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXM 485
++ G D + + V + L +H+ +G H
Sbjct: 98 IIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHK----NGQIHRDVKAGNILLGEDG 153
Query: 486 EPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMCST----------------IKADVY 529
I+++G+ +FLA + N + T KAD++
Sbjct: 154 SVQIADFGV-------SAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIW 206
Query: 530 GFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVE--VFD-EVLIAEAASEERMLKLL 586
FG+ +EL TG + + + ++ + ++E V D E+L S +M+ L
Sbjct: 207 SFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISL- 265
Query: 587 QVALRCINQSPNERPSMNQV 606
C+ + P +RP+ ++
Sbjct: 266 -----CLQKDPEKRPTAAEL 280
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 18/183 (9%)
Query: 370 GLMLAVKRLRDWSISSED----FKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPN 425
G +AVK L I S D K +Q + +HP+++ + + +V EY
Sbjct: 36 GHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSG 95
Query: 426 GSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXM 485
G LF+ + ++G+ + +R R+ + A+ H + + H M
Sbjct: 96 GELFDYI--CKHGRVEEMEAR-RLFQQILSAVDYCHRHM----VVHRDLKPENVLLDAHM 148
Query: 486 EPCISEYGLIVTENHDQSFLAQTSSLKIND-----ISNQMCSTIKADVYGFGVILLELLT 540
I+++GL + D FL +TS N IS ++ + + D++ GVIL LL
Sbjct: 149 NAKIADFGLSNMMS-DGEFL-RTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLC 206
Query: 541 GKL 543
G L
Sbjct: 207 GTL 209
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 94/202 (46%), Gaps = 19/202 (9%)
Query: 351 AELLGRGKHGSLYR-VVLDDG----LMLAVKRLRDWS--ISSEDFKNRMQKIDHVKHPNV 403
++LG G G++Y+ + + +G + +A+K L + + ++ +F + + + HP++
Sbjct: 20 VKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHL 79
Query: 404 LPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEE 463
+ L C LV + P+G L +H ++ + GS+L + CV A +++
Sbjct: 80 VRLLGV-CLSPTIQLVTQLMPHGCLLEYVHEHKD----NIGSQLLLNWCVQIAKGMMY-- 132
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGLI-VTENHDQSFLAQTSSLKINDISNQMCS 522
L E + H I+++GL + E ++ + A + I ++ +
Sbjct: 133 LEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIH 192
Query: 523 ----TIKADVYGFGVILLELLT 540
T ++DV+ +GV + EL+T
Sbjct: 193 YRKFTHQSDVWSYGVTIWELMT 214
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/221 (19%), Positives = 96/221 (43%), Gaps = 31/221 (14%)
Query: 341 LKFEDLLRAPAELLGRGKHGSLYRV-VLDDGLMLAVKRLRDWSISSEDFKNRMQ--KIDH 397
L F+ + E+ RG+ G +++ +L++ + + + ++D + ++N + +
Sbjct: 19 LYFQSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQD----KQSWQNEYEVYSLPG 74
Query: 398 VKHPNVLPPLAY----YCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACV 453
+KH N+L + + L+ + GSL + L W +A +
Sbjct: 75 MKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFL----KANVVSWNELCHIAETM 130
Query: 454 AKALALIHEELR--EDG----IAHGXXXXXXXXXXXXMEPCISEYGLIVT--------EN 499
A+ LA +HE++ +DG I+H + CI+++GL + +
Sbjct: 131 ARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDT 190
Query: 500 HDQSFLAQTSSLKIND--ISNQMCSTIKADVYGFGVILLEL 538
H Q + + ++ + I+ Q + ++ D+Y G++L EL
Sbjct: 191 HGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWEL 231
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 342 KFEDLLRAPAELLGRGKHGSLYRVV-LDDGLMLAVKRLRDWSISSED--FKNRMQKIDHV 398
KFED+ + +ELLG G + + V L +G AVK + + S F+
Sbjct: 9 KFEDMYKLTSELLGEGAYAKVQGAVSLQNGKEYAVKIIEKQAGHSRSRVFREVETLYQCQ 68
Query: 399 KHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALA 458
+ N+L + ++ LV+E GS+ + ++ F+ RV VA AL
Sbjct: 69 GNKNILELIEFFEDDTRFYLVFEKLQGGSILAHIQKQKH---FNEREASRVVRDVAAALD 125
Query: 459 LIHEELREDGIAH 471
+H + GIAH
Sbjct: 126 FLHTK----GIAH 134
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 94/202 (46%), Gaps = 19/202 (9%)
Query: 351 AELLGRGKHGSLYR-VVLDDG----LMLAVKRLRDWS--ISSEDFKNRMQKIDHVKHPNV 403
++LG G G++Y+ + + +G + +A+K L + + ++ +F + + + HP++
Sbjct: 43 VKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHL 102
Query: 404 LPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEE 463
+ L C LV + P+G L +H ++ + GS+L + CV A +++
Sbjct: 103 VRLLGV-CLSPTIQLVTQLMPHGCLLEYVHEHKD----NIGSQLLLNWCVQIAKGMMY-- 155
Query: 464 LREDGIAHGXXXXXXXXXXXXMEPCISEYGLI-VTENHDQSFLAQTSSLKINDISNQMCS 522
L E + H I+++GL + E ++ + A + I ++ +
Sbjct: 156 LEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIH 215
Query: 523 ----TIKADVYGFGVILLELLT 540
T ++DV+ +GV + EL+T
Sbjct: 216 YRKFTHQSDVWSYGVTIWELMT 237
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/289 (18%), Positives = 120/289 (41%), Gaps = 32/289 (11%)
Query: 339 NKLKFEDLLRAPAELLGRGKHGSLYRVVLDDGLM-LAVKRLRDWSISSED--FKNRMQKI 395
N L+F L A A G+ + + + +D ++ +AVK L+ + + E + ++ +
Sbjct: 38 NNLQFGKTLGAGA--FGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIM 95
Query: 396 DHV-KHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLH-------GSENGQSFDWGSRL 447
H+ +H N++ L L++ EY G L N L E+G+ + L
Sbjct: 96 SHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLL 155
Query: 448 RVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQ 507
++ VA+ +A L H I ++GL +D +++ +
Sbjct: 156 HFSSQVAQGMAF----LASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 211
Query: 508 TSS-LKINDISNQ----MCSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREE 562
++ L + ++ + T+++DV+ +G++L E+ + L G + + + +V++
Sbjct: 212 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDG 271
Query: 563 WTVEVFDEVLIAEAASEERMLKLLQVALRCINQSPNERPSMNQVAVMIN 611
+ + A + + + ++Q C P RP+ Q+ +
Sbjct: 272 YQ-------MAQPAFAPKNIYSIMQA---CWALEPTHRPTFQQICSFLQ 310
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 45/217 (20%)
Query: 352 ELLGRGKHGSLYRVV----LDDGLMLAVKRLRDWSI-----SSEDFKNRMQKIDHVKHPN 402
++LG G +G ++ V D G + A+K L+ +I ++E + Q ++H++
Sbjct: 60 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSP 119
Query: 403 VLPPLAYYCSKQEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIH 461
L L Y + KL L+ +Y G LF H S+ + + ++ V V LAL
Sbjct: 120 FLVTLHYAFQTETKLHLILDYINGGELFT--HLSQRERFTEHEVQIYVGEIV---LAL-- 172
Query: 462 EELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQMC 521
E L + GI + ++++GL + F+A + + + C
Sbjct: 173 EHLHKLGIIYRDIKLENILLDSNGHVVLTDFGL------SKEFVADET-----ERAYDFC 221
Query: 522 STIK-----------------ADVYGFGVILLELLTG 541
TI+ D + GV++ ELLTG
Sbjct: 222 GTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTG 258
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 53/289 (18%), Positives = 120/289 (41%), Gaps = 32/289 (11%)
Query: 339 NKLKFEDLLRAPAELLGRGKHGSLYRVVLDDGLM-LAVKRLRDWSISSED--FKNRMQKI 395
N L+F L A A G+ + + + +D ++ +AVK L+ + + E + ++ +
Sbjct: 46 NNLQFGKTLGAGA--FGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIM 103
Query: 396 DHV-KHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLH-------GSENGQSFDWGSRL 447
H+ +H N++ L L++ EY G L N L E+G+ + L
Sbjct: 104 SHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLL 163
Query: 448 RVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQ 507
++ VA+ +A L H I ++GL +D +++ +
Sbjct: 164 HFSSQVAQGMAF----LASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 219
Query: 508 TSS-LKINDISNQ----MCSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREE 562
++ L + ++ + T+++DV+ +G++L E+ + L G + + + +V++
Sbjct: 220 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDG 279
Query: 563 WTVEVFDEVLIAEAASEERMLKLLQVALRCINQSPNERPSMNQVAVMIN 611
+ + A + + + ++Q C P RP+ Q+ +
Sbjct: 280 YQ-------MAQPAFAPKNIYSIMQA---CWALEPTHRPTFQQICSFLQ 318
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 89/222 (40%), Gaps = 62/222 (27%)
Query: 354 LGRGKHGSLYRVVLDD-----GLMLAVKRLRDWSISSE-DFKNRMQ--KIDH----VKHP 401
LG+G GS+ D G ++AVK+L+ + DF+ +Q K H VK+
Sbjct: 18 LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 77
Query: 402 NVLPPLAYYCSKQEKLLVYEYQPNGSLFN--------------LLHGSENGQSFDW-GSR 446
V +Y +Q LV EY P+G L + LL+ S+ + ++ GSR
Sbjct: 78 GV----SYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR 133
Query: 447 LRVAACVAKALAL--------IHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTE 498
CV + LA H ++ + G+A + P +Y ++
Sbjct: 134 ----RCVHRDLAARNILVESEAHVKIADFGLA-------------KLLPLDKDYYVVREP 176
Query: 499 NHDQSFLAQTSSLKINDISNQMCSTIKADVYGFGVILLELLT 540
F SL N S Q +DV+ FGV+L EL T
Sbjct: 177 GQSPIFWYAPESLSDNIFSRQ------SDVWSFGVVLYELFT 212
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 114 VSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSELPDLSRISGLLT 173
+S I LT LY+ N L+ LP + L+NL+ LD+S+N +S +L L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 174 FFAENNQLRGGIPEFDFSNL--LQF 196
F+ +N + +P ++F NL LQF
Sbjct: 298 FYFFDNMVT-TLP-WEFGNLCNLQF 320
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 89/222 (40%), Gaps = 62/222 (27%)
Query: 354 LGRGKHGSLYRVVLDD-----GLMLAVKRLRDWSISSE-DFKNRMQ--KIDH----VKHP 401
LG+G GS+ D G ++AVK+L+ + DF+ +Q K H VK+
Sbjct: 19 LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 78
Query: 402 NVLPPLAYYCSKQEKLLVYEYQPNGSLFN--------------LLHGSENGQSFDW-GSR 446
V +Y +Q LV EY P+G L + LL+ S+ + ++ GSR
Sbjct: 79 GV----SYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR 134
Query: 447 LRVAACVAKALAL--------IHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTE 498
CV + LA H ++ + G+A + P +Y ++
Sbjct: 135 ----RCVHRDLAARNILVESEAHVKIADFGLA-------------KLLPLDKDYYVVREP 177
Query: 499 NHDQSFLAQTSSLKINDISNQMCSTIKADVYGFGVILLELLT 540
F SL N S Q +DV+ FGV+L EL T
Sbjct: 178 GQSPIFWYAPESLSDNIFSRQ------SDVWSFGVVLYELFT 213
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 29/208 (13%)
Query: 352 ELLGRGKHGSLYRVVLDDG----LMLAVKRLRDWSISSED-FKNRMQK--IDHVKHPNVL 404
++LG+G G ++ V G + A+K L+ ++ D + +M++ + V HP ++
Sbjct: 30 KVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIV 89
Query: 405 PPLAYYCSKQEKL-LVYEYQPNGSLFNLLHG----SENGQSFDWGSRLRVAACVAKALAL 459
L Y + KL L+ ++ G LF L +E F + + L +A +L +
Sbjct: 90 K-LHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKF-YLAELALALDHLHSLGI 147
Query: 460 IHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL----IVTENHDQSFLAQTSSLKIND 515
I+ +L+ + I ++++GL I E SF T +
Sbjct: 148 IYRDLKPENILLDEEGHIK----------LTDFGLSKESIDHEKKAYSFCG-TVEYMAPE 196
Query: 516 ISNQMCSTIKADVYGFGVILLELLTGKL 543
+ N+ T AD + FGV++ E+LTG L
Sbjct: 197 VVNRRGHTQSADWWSFGVLMFEMLTGTL 224
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 108/266 (40%), Gaps = 28/266 (10%)
Query: 354 LGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLAYYCSK 413
LG G+ G + +A+K +++ S+S ++F + + ++ H L L C+K
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK-LVQLYGVCTK 75
Query: 414 QEKL-LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHG 472
Q + ++ EY NG L N L E F L + V +A+ E L H
Sbjct: 76 QRPIFIITEYMANGCLLNYLR--EMRHRFQTQQLLEMCKDVCEAM----EYLESKQFLHR 129
Query: 473 XXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKINDISNQMCSTI--KADV 528
+S++GL V ++ S ++ + M S K+D+
Sbjct: 130 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRGSKFPVRWSPPEVLMYSKFSSKSDI 189
Query: 529 YGFGVILLELLT-GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEAASEERMLKLLQ 587
+ FGV++ E+ + GK+ N T H + ++ L +E K+
Sbjct: 190 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQ----GLRLYRPHLASE--------KVYT 237
Query: 588 VALRCINQSPNERPSMNQVAVMINNI 613
+ C ++ +ERP+ ++++NI
Sbjct: 238 IMYSCWHEKADERPTFK---ILLSNI 260
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 16/182 (8%)
Query: 370 GLMLAVKRLRDWSISSED----FKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPN 425
G +AVK L I S D K +Q + +HP+++ + + +V EY
Sbjct: 36 GHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSG 95
Query: 426 GSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXM 485
G LF+ + ++G+ + +R R+ + A+ H + + H M
Sbjct: 96 GELFDYI--CKHGRVEEMEAR-RLFQQILSAVDYCHRHM----VVHRDLKPENVLLDAHM 148
Query: 486 EPCISEYGLIVTENHDQSFLAQTSS----LKINDISNQMCSTIKADVYGFGVILLELLTG 541
I+++GL + D FL + IS ++ + + D++ GVIL LL G
Sbjct: 149 NAKIADFGLSNMMS-DGEFLRDSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCG 207
Query: 542 KL 543
L
Sbjct: 208 TL 209
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 89/222 (40%), Gaps = 62/222 (27%)
Query: 354 LGRGKHGSLYRVVLDD-----GLMLAVKRLRDWSISSE-DFKNRMQ--KIDH----VKHP 401
LG+G GS+ D G ++AVK+L+ + DF+ +Q K H VK+
Sbjct: 31 LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 90
Query: 402 NVLPPLAYYCSKQEKLLVYEYQPNGSLFN--------------LLHGSENGQSFDW-GSR 446
V +Y +Q LV EY P+G L + LL+ S+ + ++ GSR
Sbjct: 91 GV----SYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR 146
Query: 447 LRVAACVAKALAL--------IHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTE 498
CV + LA H ++ + G+A + P +Y ++
Sbjct: 147 ----RCVHRDLAARNILVESEAHVKIADFGLA-------------KLLPLDKDYYVVREP 189
Query: 499 NHDQSFLAQTSSLKINDISNQMCSTIKADVYGFGVILLELLT 540
F SL N S Q +DV+ FGV+L EL T
Sbjct: 190 GQSPIFWYAPESLSDNIFSRQ------SDVWSFGVVLYELFT 225
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN---GQ 439
+S ED + + + ++HPNV+ Y +K + +L+ E G LF+ L E+ +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILIGELVAGGELFDFLAEKESLTEEE 115
Query: 440 SFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVT 497
+ ++ ++ +L + H +L+ + I +P I ++GL
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENIM--------LLDRNVPKPRIKIIDFGLAHK 167
Query: 498 ENHDQSF--LAQTSSLKINDISNQMCSTIKADVYGFGVILLELLTG 541
+ F + T +I N ++AD++ GVI LL+G
Sbjct: 168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 29/208 (13%)
Query: 352 ELLGRGKHGSLYRVVLDDG----LMLAVKRLRDWSISSED-FKNRMQK--IDHVKHPNVL 404
++LG+G G ++ V G + A+K L+ ++ D + +M++ + V HP ++
Sbjct: 30 KVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIV 89
Query: 405 PPLAYYCSKQEKL-LVYEYQPNGSLFNLLHG----SENGQSFDWGSRLRVAACVAKALAL 459
L Y + KL L+ ++ G LF L +E F + + L +A +L +
Sbjct: 90 K-LHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKF-YLAELALALDHLHSLGI 147
Query: 460 IHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL----IVTENHDQSFLAQTSSLKIND 515
I+ +L+ + I ++++GL I E SF T +
Sbjct: 148 IYRDLKPENILLDEEGHIK----------LTDFGLSKESIDHEKKAYSFCG-TVEYMAPE 196
Query: 516 ISNQMCSTIKADVYGFGVILLELLTGKL 543
+ N+ T AD + FGV++ E+LTG L
Sbjct: 197 VVNRRGHTQSADWWSFGVLMFEMLTGTL 224
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 29/208 (13%)
Query: 352 ELLGRGKHGSLYRVVLDDG----LMLAVKRLRDWSISSED-FKNRMQK--IDHVKHPNVL 404
++LG+G G ++ V G + A+K L+ ++ D + +M++ + V HP ++
Sbjct: 31 KVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIV 90
Query: 405 PPLAYYCSKQEKL-LVYEYQPNGSLFNLLHG----SENGQSFDWGSRLRVAACVAKALAL 459
L Y + KL L+ ++ G LF L +E F + + L +A +L +
Sbjct: 91 K-LHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKF-YLAELALALDHLHSLGI 148
Query: 460 IHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL----IVTENHDQSFLAQTSSLKIND 515
I+ +L+ + I ++++GL I E SF T +
Sbjct: 149 IYRDLKPENILLDEEGHIK----------LTDFGLSKESIDHEKKAYSFCG-TVEYMAPE 197
Query: 516 ISNQMCSTIKADVYGFGVILLELLTGKL 543
+ N+ T AD + FGV++ E+LTG L
Sbjct: 198 VVNRRGHTQSADWWSFGVLMFEMLTGTL 225
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 103 LSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSL-SKLNNLKRLDISNNNFSSE 161
L LE N++ + LT LY+G NKL +LP+ + +KL +L L++S N S
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS- 90
Query: 162 LPD--LSRISGLLTFFAENNQLRGGIPEFDFSNLLQF 196
LP+ +++ L NQL+ +P+ F L Q
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQL 126
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 29/208 (13%)
Query: 352 ELLGRGKHGSLYRVV----LDDGLMLAVKRLRDWSISSED-FKNRMQK--IDHVKHPNVL 404
++LG+G G ++ V D G + A+K L+ ++ D + +M++ + V HP V+
Sbjct: 34 KVLGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRVRTKMERDILADVNHPFVV 93
Query: 405 PPLAYYCSKQEKL-LVYEYQPNGSLFNLLHG----SENGQSFDWGSRLRVAACVAKALAL 459
L Y + KL L+ ++ G LF L +E F + + L + +L +
Sbjct: 94 K-LHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKF-YLAELALGLDHLHSLGI 151
Query: 460 IHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL----IVTENHDQSFLAQTSSLKIND 515
I+ +L+ + I ++++GL I E SF T +
Sbjct: 152 IYRDLKPENILLDEEGHIK----------LTDFGLSKEAIDHEKKAYSFCG-TVEYMAPE 200
Query: 516 ISNQMCSTIKADVYGFGVILLELLTGKL 543
+ N+ + AD + +GV++ E+LTG L
Sbjct: 201 VVNRQGHSHSADWWSYGVLMFEMLTGSL 228
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 98 QSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKL-SGNLPDSLSKLNNLKRLDISNN 156
Q LV L E N+A + I + K L L V N + S LP+ S L NL+ LD+S+N
Sbjct: 105 QKLVAL---ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Query: 157 NFSS 160
S
Sbjct: 162 KIQS 165
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 45/244 (18%)
Query: 387 DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSR 446
DF + HPN++ + ++V EY NGSL + L + ++
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHD--------AQ 143
Query: 447 LRVAACVA--KALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQ 502
V V + +A + L + G H + +S++GL ++ ++ +
Sbjct: 144 FTVIQLVGMLRGIASGMKYLSDMGFVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 203
Query: 503 SFLAQTSSLKINDISNQMCS----TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHS 557
++ + + I S + + T +DV+ +G++L E+++ G+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE--------------- 248
Query: 558 VVREEWTVEVFDEVLIAEAASEERMLK--------LLQVALRCINQSPNERPSMNQVAVM 609
R W + D + +A E L L Q+ L C + N RP Q+ +
Sbjct: 249 --RPYWEMSNQD---VIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSI 303
Query: 610 INNI 613
++ +
Sbjct: 304 LDKL 307
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 352 ELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNR-MQKIDHVKHPNVLPPLAYY 410
+++G G G +++ L + +A+K++ + + FKNR +Q + VKHPNV+ A++
Sbjct: 46 KVIGNGSFGVVFQAKLVESDEVAIKKV----LQDKRFKNRELQIMRIVKHPNVVDLKAFF 101
Query: 411 CSKQEKL------LVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEEL 464
S +K LV EY P H ++ Q+ + ++LA IH
Sbjct: 102 YSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH--- 158
Query: 465 REDGIAH 471
GI H
Sbjct: 159 -SIGICH 164
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 106/271 (39%), Gaps = 59/271 (21%)
Query: 373 LAVKRLRDWSISSE--DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLL-VYEYQPNGSLF 429
+AVK L++ + SE D + + V HP+V+ L CS+ LL + EY GSL
Sbjct: 56 VAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK-LYGACSQDGPLLLIVEYAKYGSLR 114
Query: 430 NLLHGSE---------------------NGQSFDWGSRLRVAACVAKALALIHEELREDG 468
L S + ++ G + A +++ + + L E
Sbjct: 115 GFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGM----QYLAEMS 170
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSS------LKINDISNQMCS 522
+ H + IS++GL + S + ++ + I + + + +
Sbjct: 171 LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYT 230
Query: 523 TIKADVYGFGVILLELLT------GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEA 576
T ++DV+ FGV+L E++T + FNL H + R +
Sbjct: 231 T-QSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMER-------------PDN 276
Query: 577 ASEERMLKLLQVALRCINQSPNERPSMNQVA 607
SEE + ++ L+C Q P++RP ++
Sbjct: 277 CSEE----MYRLMLQCWKQEPDKRPVFADIS 303
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 82 GFNLSGILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDS 141
GFN L+ K L VL+L+ N ++ + + C LT L++ N + +
Sbjct: 57 GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116
Query: 142 LSKLNNLKRLDISNNNFSS 160
K NL LD+S+N SS
Sbjct: 117 FVKQKNLITLDLSHNGLSS 135
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 45/244 (18%)
Query: 387 DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSR 446
DF + HPN++ + ++V EY NGSL + L + ++
Sbjct: 63 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHD--------AQ 114
Query: 447 LRVAACVA--KALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQ 502
V V + +A + L + G H + +S++GL ++ ++ +
Sbjct: 115 FTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 174
Query: 503 SFLAQTSSLKINDISNQMCS----TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHS 557
++ + + I S + + T +DV+ +G++L E+++ G+
Sbjct: 175 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE--------------- 219
Query: 558 VVREEWTVEVFDEVLIAEAASEERML--------KLLQVALRCINQSPNERPSMNQVAVM 609
R W + D + +A E L L Q+ L C + N RP Q+ +
Sbjct: 220 --RPYWEMSNQD---VIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSI 274
Query: 610 INNI 613
++ +
Sbjct: 275 LDKL 278
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 45/244 (18%)
Query: 387 DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSR 446
DF + HPN++ + ++V EY NGSL + L + ++
Sbjct: 80 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHD--------AQ 131
Query: 447 LRVAACVA--KALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQ 502
V V + +A + L + G H + +S++GL ++ ++ +
Sbjct: 132 FTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 191
Query: 503 SFLAQTSSLKINDISNQMCS----TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHS 557
++ + + I S + + T +DV+ +G++L E+++ G+
Sbjct: 192 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE--------------- 236
Query: 558 VVREEWTVEVFDEVLIAEAASEERML--------KLLQVALRCINQSPNERPSMNQVAVM 609
R W + D + +A E L L Q+ L C + N RP Q+ +
Sbjct: 237 --RPYWEMSNQD---VIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSI 291
Query: 610 INNI 613
++ +
Sbjct: 292 LDKL 295
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 82 GFNLSGILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDS 141
GFN L+ K L VL+L+ N ++ + + C LT L++ N + +
Sbjct: 62 GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 121
Query: 142 LSKLNNLKRLDISNNNFSS 160
K NL LD+S+N SS
Sbjct: 122 FVKQKNLITLDLSHNGLSS 140
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 82 GFNLSGILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDS 141
GFN L+ K L VL+L+ N ++ + + C LT L++ N + +
Sbjct: 67 GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 126
Query: 142 LSKLNNLKRLDISNNNFSS 160
K NL LD+S+N SS
Sbjct: 127 FVKQKNLITLDLSHNGLSS 145
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 90 DTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLK 149
D T + LV + + N IA ++N LT L + N+++ D L L NL
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD--IDPLKNLTNLN 132
Query: 150 RLDISNNNFSSELPDLSRISGLLTFFAEN---NQLRGGIPEFDFSNLLQFNVSNNNLS 204
RL++S+N S D+S +SGL + N NQ+ P + + L + ++S+N +S
Sbjct: 133 RLELSSNTIS----DISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS 186
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 116 QEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSELPDLSRISGLLTFF 175
+ ++N L L + NK+S L+KL NL+ L I+ NN S++ L ++ L
Sbjct: 167 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL-IATNNQISDITPLGILTNLDELS 223
Query: 176 AENNQLRGGIPEFDFSNLLQFNVSNNNLS--GPVPGVNG----RLGADSFSGNPGLCG 227
NQL+ +NL +++NN +S P+ G+ +LGA+ S L G
Sbjct: 224 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 281
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 45/244 (18%)
Query: 387 DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSR 446
DF + HPN++ + ++V EY NGSL + L + ++
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHD--------AQ 143
Query: 447 LRVAACVA--KALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQ 502
V V + +A + L + G H + +S++GL ++ ++ +
Sbjct: 144 FTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 203
Query: 503 SFLAQTSSLKINDISNQMCS----TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHS 557
++ + + I S + + T +DV+ +G++L E+++ G+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE--------------- 248
Query: 558 VVREEWTVEVFDEVLIAEAASEERMLK--------LLQVALRCINQSPNERPSMNQVAVM 609
R W + D + +A E L L Q+ L C + N RP Q+ +
Sbjct: 249 --RPYWEMSNQD---VIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSI 303
Query: 610 INNI 613
++ +
Sbjct: 304 LDKL 307
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 45/244 (18%)
Query: 387 DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSR 446
DF + HPN++ + ++V EY NGSL + L + ++
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHD--------AQ 143
Query: 447 LRVAACVA--KALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQ 502
V V + +A + L + G H + +S++GL ++ ++ +
Sbjct: 144 FTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEA 203
Query: 503 SFLAQTSSLKINDISNQMCS----TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHS 557
++ + + I S + + T +DV+ +G++L E+++ G+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE--------------- 248
Query: 558 VVREEWTVEVFDEVLIAEAASEERMLK--------LLQVALRCINQSPNERPSMNQVAVM 609
R W + D + +A E L L Q+ L C + N RP Q+ +
Sbjct: 249 --RPYWEMSNQD---VIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSI 303
Query: 610 INNI 613
++ +
Sbjct: 304 LDKL 307
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 45/244 (18%)
Query: 387 DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSR 446
DF + HPN++ + ++V EY NGSL + L + ++
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHD--------AQ 143
Query: 447 LRVAACVA--KALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQ 502
V V + +A + L + G H + +S++GL ++ ++ +
Sbjct: 144 FTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEA 203
Query: 503 SFLAQTSSLKINDISNQMCS----TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHS 557
++ + + I S + + T +DV+ +G++L E+++ G+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE--------------- 248
Query: 558 VVREEWTVEVFDEVLIAEAASEERMLK--------LLQVALRCINQSPNERPSMNQVAVM 609
R W + D + +A E L L Q+ L C + N RP Q+ +
Sbjct: 249 --RPYWEMSNQD---VIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSI 303
Query: 610 INNI 613
++ +
Sbjct: 304 LDKL 307
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 45/244 (18%)
Query: 387 DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSR 446
DF + HPN++ + ++V EY NGSL + L + ++
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHD--------AQ 143
Query: 447 LRVAACVA--KALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQ 502
V V + +A + L + G H + +S++GL ++ ++ +
Sbjct: 144 FTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 203
Query: 503 SFLAQTSSLKINDISNQMCS----TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHS 557
++ + + I S + + T +DV+ +G++L E+++ G+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE--------------- 248
Query: 558 VVREEWTVEVFDEVLIAEAASEERMLK--------LLQVALRCINQSPNERPSMNQVAVM 609
R W + D + +A E L L Q+ L C + N RP Q+ +
Sbjct: 249 --RPYWEMSNQD---VIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSI 303
Query: 610 INNI 613
++ +
Sbjct: 304 LDKL 307
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 45/244 (18%)
Query: 387 DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSR 446
DF + HPN++ + ++V EY NGSL + L + ++
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHD--------AQ 143
Query: 447 LRVAACVA--KALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQ 502
V V + +A + L + G H + +S++GL ++ ++ +
Sbjct: 144 FTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 203
Query: 503 SFLAQTSSLKINDISNQMCS----TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHS 557
++ + + I S + + T +DV+ +G++L E+++ G+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE--------------- 248
Query: 558 VVREEWTVEVFDEVLIAEAASEERMLK--------LLQVALRCINQSPNERPSMNQVAVM 609
R W + D + +A E L L Q+ L C + N RP Q+ +
Sbjct: 249 --RPYWEMSNQD---VIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSI 303
Query: 610 INNI 613
++ +
Sbjct: 304 LDKL 307
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 45/244 (18%)
Query: 387 DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSR 446
DF + HPN++ + ++V EY NGSL + L + ++
Sbjct: 92 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHD--------AQ 143
Query: 447 LRVAACVA--KALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQ 502
V V + +A + L + G H + +S++GL ++ ++ +
Sbjct: 144 FTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 203
Query: 503 SFLAQTSSLKINDISNQMCS----TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHS 557
++ + + I S + + T +DV+ +G++L E+++ G+
Sbjct: 204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE--------------- 248
Query: 558 VVREEWTVEVFDEVLIAEAASEERMLK--------LLQVALRCINQSPNERPSMNQVAVM 609
R W + D + +A E L L Q+ L C + N RP Q+ +
Sbjct: 249 --RPYWEMSNQD---VIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSI 303
Query: 610 INNI 613
++ +
Sbjct: 304 LDKL 307
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 106/271 (39%), Gaps = 59/271 (21%)
Query: 373 LAVKRLRDWSISSE--DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLL-VYEYQPNGSLF 429
+AVK L++ + SE D + + V HP+V+ L CS+ LL + EY GSL
Sbjct: 56 VAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK-LYGACSQDGPLLLIVEYAKYGSLR 114
Query: 430 NLLHGSE---------------------NGQSFDWGSRLRVAACVAKALALIHEELREDG 468
L S + ++ G + A +++ + + L E
Sbjct: 115 GFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGM----QYLAEMK 170
Query: 469 IAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSS------LKINDISNQMCS 522
+ H + IS++GL + S + ++ + I + + + +
Sbjct: 171 LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFDHIYT 230
Query: 523 TIKADVYGFGVILLELLT------GKLVQNNGFNLATWVHSVVREEWTVEVFDEVLIAEA 576
T ++DV+ FGV+L E++T + FNL H + R +
Sbjct: 231 T-QSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMER-------------PDN 276
Query: 577 ASEERMLKLLQVALRCINQSPNERPSMNQVA 607
SEE + ++ L+C Q P++RP ++
Sbjct: 277 CSEE----MYRLMLQCWKQEPDKRPVFADIS 303
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKL-SGNLPDSLSKLNNLKRLDISNNN 157
SL L E N+A + I + K L L V N + S LP+ S L NL+ LD+S+N
Sbjct: 103 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 162
Query: 158 FSS 160
S
Sbjct: 163 IQS 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKL-SGNLPDSLSKLNNLKRLDISNNN 157
SL L E N+A + I + K L L V N + S LP+ S L NL+ LD+S+N
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 158 FSS 160
S
Sbjct: 161 IQS 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKL-SGNLPDSLSKLNNLKRLDISNNN 157
SL L E N+A + I + K L L V N + S LP+ S L NL+ LD+S+N
Sbjct: 102 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 161
Query: 158 FSS 160
S
Sbjct: 162 IQS 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKL-SGNLPDSLSKLNNLKRLDISNNN 157
SL L E N+A + I + K L L V N + S LP+ S L NL+ LD+S+N
Sbjct: 102 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 161
Query: 158 FSS 160
S
Sbjct: 162 IQS 164
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 45/244 (18%)
Query: 387 DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSR 446
DF + HPN++ + ++V EY NGSL + L + ++
Sbjct: 90 DFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHD--------AQ 141
Query: 447 LRVAACVA--KALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQ 502
V V + +A + L + G H + +S++GL ++ ++ +
Sbjct: 142 FTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEA 201
Query: 503 SFLAQTSSLKINDISNQMCS----TIKADVYGFGVILLELLT-GKLVQNNGFNLATWVHS 557
++ + + I S + + T +DV+ +G++L E+++ G+
Sbjct: 202 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGE--------------- 246
Query: 558 VVREEWTVEVFDEVLIAEAASEERMLK--------LLQVALRCINQSPNERPSMNQVAVM 609
R W + D + +A E L L Q+ L C + N RP Q+ +
Sbjct: 247 --RPYWEMSNQD---VIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSI 301
Query: 610 INNI 613
++ +
Sbjct: 302 LDKL 305
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 88 ILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNN 147
I D T V L L + N I T ++N QLT L +G N++S +++ L
Sbjct: 211 ITDITPVANXTRLNSLKIGNNKI--TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTK 266
Query: 148 LKRLDISNNNFSSELPDLSRISGLLTFFAENNQL 181
LK L++ +N S++ L+ +S L + F NNQL
Sbjct: 267 LKXLNVGSNQI-SDISVLNNLSQLNSLFLNNNQL 299
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 66 VTCDSRQKSVRKIVLDGFNLSGILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLT 125
V +S+ K+V+ G ++ I + +L L+L N I +SN +LT
Sbjct: 37 VVTQEELESITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQITDI--SPLSNLVKLT 91
Query: 126 HLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSELPDLSRISGLLTFFAEN 178
+LY+G NK++ +L L NL+ L ++ +N S D+S ++ L ++ N
Sbjct: 92 NLYIGTNKITD--ISALQNLTNLRELYLNEDNIS----DISPLANLTKXYSLN 138
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 90 DTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLK 149
D T + LV + + N IA ++N LT L + N+++ D L L NL
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD--IDPLKNLTNLN 132
Query: 150 RLDISNNNFSSELPDLSRISGL-----LTFFAENNQLRGGIPEFDFSNLLQFNVSNNNLS 204
RL++S+N S D+S +SGL L+F +NQ+ P + + L + ++S+N +S
Sbjct: 133 RLELSSNTIS----DISALSGLTSLQQLSF--SSNQVTDLKPLANLTTLERLDISSNKVS 186
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 88 ILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNN 147
I D +++ SL LS N + T + ++N L L + NK+S L+KL N
Sbjct: 141 ISDISALSGLTSLQQLSFSSNQV--TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTN 196
Query: 148 LKRLDISNNNFSSELPDLSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNNLS--G 205
L+ L I+ NN S++ L ++ L NQL+ +NL +++NN +S
Sbjct: 197 LESL-IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 255
Query: 206 PVPGVNG----RLGADSFSGNPGLCG 227
P+ G+ +LGA+ S L G
Sbjct: 256 PLSGLTKLTELKLGANQISNISPLAG 281
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 16/182 (8%)
Query: 370 GLMLAVKRLRDWSISSED----FKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPN 425
G +AVK L I S D + +Q + +HP+++ + + +V EY
Sbjct: 41 GHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSG 100
Query: 426 GSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXM 485
G LF+ + +NG+ + SR R+ + + H + + H M
Sbjct: 101 GELFDYI--CKNGRLDEKESR-RLFQQILSGVDYCHRHM----VVHRDLKPENVLLDAHM 153
Query: 486 EPCISEYGLIVTENHDQSFLAQTSS----LKINDISNQMCSTIKADVYGFGVILLELLTG 541
I+++GL + D FL + IS ++ + + D++ GVIL LL G
Sbjct: 154 NAKIADFGLSNMMS-DGEFLRXSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCG 212
Query: 542 KL 543
L
Sbjct: 213 TL 214
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.0 bits (71), Expect = 1.00, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 127 LYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSELPD--LSRISGLLTFFAENNQLRGG 184
LY+ N+++ P +L L RLD+ NN + LP +++ L +NQL+
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLK-S 92
Query: 185 IPEFDFSNL 193
IP F NL
Sbjct: 93 IPRGAFDNL 101
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 19/167 (11%)
Query: 386 EDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGS 445
++F+ + + ++ HPN++ Y +V E+ P G L++ L + W
Sbjct: 68 QEFQREVFIMSNLNHPNIVK--LYGLMHNPPRMVMEFVPCGDLYHRL--LDKAHPIKWSV 123
Query: 446 RLRVAACVAKAL--------ALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVT 497
+LR+ +A + ++H +LR I ++++G
Sbjct: 124 KLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAK-----VADFGTSQQ 178
Query: 498 ENHDQS-FLAQTSSLKINDI-SNQMCSTIKADVYGFGVILLELLTGK 542
H S L + I + + T KAD Y F +IL +LTG+
Sbjct: 179 SVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGE 225
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 90 DTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLK 149
D T + LV + + N IA ++N LT L + N+++ D L L NL
Sbjct: 77 DITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD--IDPLKNLTNLN 132
Query: 150 RLDISNNNFSSELPDLSRISGL-----LTFFAENNQLRGGIPEFDFSNLLQFNVSNNNLS 204
RL++S+N S D+S +SGL L+F +NQ+ P + + L + ++S+N +S
Sbjct: 133 RLELSSNTIS----DISALSGLTSLQQLSF--SSNQVTDLKPLANLTTLERLDISSNKVS 186
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 88 ILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNN 147
I D +++ SL LS N + T + ++N L L + NK+S L+KL N
Sbjct: 141 ISDISALSGLTSLQQLSFSSNQV--TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTN 196
Query: 148 LKRLDISNNNFSSELPDLSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNNLS--G 205
L+ L I+ NN S++ L ++ L NQL+ +NL +++NN +S
Sbjct: 197 LESL-IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 255
Query: 206 PVPGVNG----RLGADSFSGNPGLCG 227
P+ G+ +LGA+ S L G
Sbjct: 256 PLSGLTKLTELKLGANQISNISPLAG 281
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 107 ENNIAGTVSQEISNCKQLTHLYVGRNKL-SGNLPDSLSKLNNLKRLDISNNNFSS 160
E N+A + I + K L L V N + S LP+ S L NL+ LD+S+N S
Sbjct: 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 107 ENNIAGTVSQEISNCKQLTHLYVGRNKL-SGNLPDSLSKLNNLKRLDISNNNFSS 160
E N+A + I + K L L V N + S LP+ S L NL+ LD+S+N S
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 13/181 (7%)
Query: 391 RMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVA 450
R+ KI + HPN++ +++ LV EY G +F+ L +G+ + +R +
Sbjct: 66 RIMKI--LNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL--VAHGRMKEKEARAKFR 121
Query: 451 ACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL---IVTENHDQSFLAQ 507
V+ A+ H++ I H M I+++G N +F
Sbjct: 122 QIVS-AVQYCHQKY----IVHRDLKAENLLLDGDMNIKIADFGFSNEFTVGNKLDTFCGS 176
Query: 508 TSSLKINDISNQMCSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEV 567
+ + DV+ GVIL L++G L +G NL V+R ++ +
Sbjct: 177 PPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSL-PFDGQNLKELRERVLRGKYRIPF 235
Query: 568 F 568
+
Sbjct: 236 Y 236
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNF 158
+L L L++NN+ + LTHL++ N++ + L++L RL + N+
Sbjct: 129 ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
Query: 159 SSELP----DLSRISGLLTF 174
+ P DL R+ L F
Sbjct: 189 ARVHPHAFRDLGRLMTLYLF 208
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 105 LEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNN 156
L N I+ + +C+ LT L++ N L+G + + L L++LD+S+N
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN 89
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 107 ENNIAGTVSQEISNCKQLTHLYVGRNKL-SGNLPDSLSKLNNLKRLDISNNNFSS 160
E N+A + I + K L L V N + S LP+ S L NL+ LD+S+N S
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNF 158
+L VL + N + + +L LY+ N+L P L+ L++L ++NNN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 159 SSELPD--LSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNN 202
+ELP L+ + L T + N L F S+LL F + N
Sbjct: 161 -TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 127 LYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSELPD--LSRISGLLTFFAENNQLRGG 184
LY+ N+++ P +L L RLD+ NN + LP +++ L +NQL+
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLK-S 100
Query: 185 IPEFDFSNL 193
IP F NL
Sbjct: 101 IPRGAFDNL 109
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 127 LYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSELPD--LSRISGLLTFFAENNQLRGG 184
LY+ N+++ P +L L RLD+ NN + LP +++ L +NQL+
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLK-S 92
Query: 185 IPEFDFSNL 193
IP F NL
Sbjct: 93 IPRGAFDNL 101
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNF 158
+L VL + N + + +L LY+ N+L P L+ L++L ++NNN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 159 SSELPD--LSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNN 202
+ELP L+ + L T + N L F S+LL F + N
Sbjct: 161 -TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNF 158
+L VL + N + + +L LY+ N+L P L+ L++L ++NNN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 159 SSELPD--LSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNN 202
+ELP L+ + L T + N L F S+LL F + N
Sbjct: 161 -TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 11/132 (8%)
Query: 104 SLEENNIAGTVS--QEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSE 161
SL++ N V+ + ++N L L + NK+S L+KL NL+ L I+ NN S+
Sbjct: 152 SLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL-IATNNQISD 208
Query: 162 LPDLSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNNLS--GPVPGVNG----RLG 215
+ L ++ L NQL+ +NL +++NN +S P+ G+ +LG
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 268
Query: 216 ADSFSGNPGLCG 227
A+ S L G
Sbjct: 269 ANQISNISPLAG 280
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNF 158
+L VL + N + + +L LY+ N+L P L+ L++L ++NNN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 159 SSELPD--LSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNN 202
+ELP L+ + L T + N L F S+LL F + N
Sbjct: 161 -TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNF 158
+L VL + N + + +L LY+ N+L P L+ L++L ++NNN
Sbjct: 102 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
Query: 159 SSELPD--LSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNN 202
+ELP L+ + L T + N L F S+LL F + N
Sbjct: 162 -TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 206
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 11/132 (8%)
Query: 104 SLEENNIAGTVS--QEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSE 161
SL++ N V+ + ++N L L + NK+S L+KL NL+ L I+ NN S+
Sbjct: 152 SLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL-IATNNQISD 208
Query: 162 LPDLSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNNLS--GPVPGVNG----RLG 215
+ L ++ L NQL+ +NL +++NN +S P+ G+ +LG
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 268
Query: 216 ADSFSGNPGLCG 227
A+ S L G
Sbjct: 269 ANQISNISPLAG 280
>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|B Chain B, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|C Chain C, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|D Chain D, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
Length = 432
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 349 APAELLGRGKHGSLYRVVLDDGLMLAVKRLRDWSISSEDFKNRMQKIDHVKHPNVLPPLA 408
P ++LG G G++ + D +AVKR+ S D + ++ + + +HPNV +
Sbjct: 27 CPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLR-ESDEHPNV---IR 82
Query: 409 YYCSKQEKLLVY 420
Y+C+++++ Y
Sbjct: 83 YFCTEKDRQFQY 94
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 119/278 (42%), Gaps = 27/278 (9%)
Query: 340 KLKFEDLLRAPAELLGRGKHGSLYRVV-LDDGLMLAVKRLRDWSISSEDFKNRMQKIDHV 398
++K +DL P LGRG +G + ++ + G ++AVKR+R +++S++ K + +D
Sbjct: 3 EVKADDL--EPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRA-TVNSQEQKRLLMDLDIS 59
Query: 399 KHPNVLP-PLAYYCS--KQEKLLVYEYQPNGSLFNLLHGS-ENGQSFDWGSRLRVAACVA 454
P + +Y + ++ + + + SL + GQ+ ++A +
Sbjct: 60 MRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIV 119
Query: 455 KALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLI------VTENHDQSFLAQT 508
KAL +H +L + H + + ++G+ V ++ D
Sbjct: 120 KALEHLHSKL---SVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYM 176
Query: 509 SSLKINDISNQMCSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREEWTVEVF 568
+ +IN NQ ++K+D++ G+ ++EL + F +W + + VE
Sbjct: 177 APERINPELNQKGYSVKSDIWSLGITMIELAILR------FPYDSWGTPFQQLKQVVEEP 230
Query: 569 DEVLIAEAASEERMLKLLQVALRCINQSPNERPSMNQV 606
L A+ S E + +C+ ++ ERP+ ++
Sbjct: 231 SPQLPADKFSAE----FVDFTSQCLKKNSKERPTYPEL 264
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 12/114 (10%)
Query: 110 IAGTVSQEISNCKQLT---HLYVGRNKLSGNLPDSL-SKLNNLKRLDISNNNFSSELPD- 164
+ G +IS K+LT +L + N+L +LP+ + KL NLK L + N S LPD
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDG 127
Query: 165 -LSRISGLLTFFAENNQLRGGIPE--FD-FSNLLQFNVSNNNLSGPVPGVNGRL 214
+++ L +NQL+ +P+ FD +NL + ++S N L GV +L
Sbjct: 128 VFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 96 KTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISN 155
K +L L L EN + LT+L + N+L KL NL LD+S
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 156 NNFSSELPD--LSRISGLLTFFAENNQLRGGIPE--FDFSNLLQF 196
N S LP+ +++ L NQL+ +P+ FD LQ+
Sbjct: 167 NQLQS-LPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQY 209
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 123 QLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSELPD--LSRISGLLTFFAENNQ 180
QL LY+ RNKL LPD+ S L L L IS N S +PD R++ L + N
Sbjct: 452 QLKELYISRNKL-MTLPDA-SLLPMLLVLKISRNQLKS-VPDGIFDRLTSLQKIWLHTNP 508
Query: 181 LRGGIPEFDF 190
P D+
Sbjct: 509 WDCSCPRIDY 518
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 86 SGILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKL 145
SG L++ T+++ L L N I + ++ C L L + N ++ DS S L
Sbjct: 14 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 73
Query: 146 NNLKRLDISNNNFS 159
+L+ LD+S N S
Sbjct: 74 GSLEHLDLSYNYLS 87
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 41/221 (18%)
Query: 402 NVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFD--WGSRLRVAACVAKALAL 459
N + P+ K + EY N +L++L+H Q D W R+ + +AL+
Sbjct: 76 NFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQQRDEYW----RLFRQILEALSY 131
Query: 460 IHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQTSSLKINDISNQ 519
IH + GI H I ++GL H + + S + S+
Sbjct: 132 IHSQ----GIIHRDLKPMNIFIDESRNVKIGDFGL-AKNVHRSLDILKLDSQNLPGSSDN 186
Query: 520 MCSTI-------------------KADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVR 560
+ S I K D+Y G+I E++ N+ + SV
Sbjct: 187 LTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSV-- 244
Query: 561 EEWTVEVFDEVLIAEAASEERMLKLLQVALRCINQSPNERP 601
++E + + E+++++LL I+ PN+RP
Sbjct: 245 ---SIEFPPDFDDNKMKVEKKIIRLL------IDHDPNKRP 276
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 101 VVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSS 160
+L L+ N+I+ + + L L + NK+S + S L L++L IS N+
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116
Query: 161 ELPDLSRISGLLTFFAENNQLRGGIPEFDFSNLLQFN 197
P+L S L+ +N++R +P+ FS L N
Sbjct: 117 IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMN 150
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 98 QSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNN 157
++L L L+ N I +++ +L L +G N++ SLS L L+ L + NN
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 158 FS---SELPDLSRISGLLTFFAENNQLRGGIPEF 188
S + LPDL + + + NN + G+ +F
Sbjct: 253 LSRVPAGLPDLKLLQ--VVYLHTNNITKVGVNDF 284
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 88/222 (39%), Gaps = 62/222 (27%)
Query: 354 LGRGKHGSLYRVVLDD-----GLMLAVKRLRDWSISSE-DFKNRMQ--KIDH----VKHP 401
LG+G GS+ D G ++AVK+L+ + DF+ +Q K H VK+
Sbjct: 15 LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 74
Query: 402 NVLPPLAYYCSKQEKLLVYEYQPNGSLFN--------------LLHGSENGQSFDW-GSR 446
V +Y + E LV EY P+G L + LL+ S+ + ++ GSR
Sbjct: 75 GV----SYGPGRPELRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR 130
Query: 447 LRVAACVAKALAL--------IHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTE 498
CV + LA H ++ + G+A + P + ++
Sbjct: 131 ----RCVHRDLAARNILVESEAHVKIADFGLA-------------KLLPLDKDXXVVREP 173
Query: 499 NHDQSFLAQTSSLKINDISNQMCSTIKADVYGFGVILLELLT 540
F SL N S Q +DV+ FGV+L EL T
Sbjct: 174 GQSPIFWYAPESLSDNIFSRQ------SDVWSFGVVLYELFT 209
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 352 ELLGRGKHGSLYRVV-LDDGLMLAVKRLRDWSISS-EDFKNRMQKIDHVKHPNVLPPLAY 409
E LG G G ++RV G A K + S E + +Q + ++HP ++
Sbjct: 163 EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDA 222
Query: 410 YCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHE 462
+ E +++YE+ G LF + N S D C K L +HE
Sbjct: 223 FEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVC--KGLCHMHE 273
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 105 LEENNIAGTVSQEISNCKQLTHLYVGRNKLSG-NLPDSLSKLNNLKRLDISN 155
L EN I+G + C L HL + NK+ + + L KL NLK LD+ N
Sbjct: 76 LSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 127
>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native
pdb|3MFS|A Chain A, Cask-4m Cam Kinase Domain, Amppnp
pdb|3MFT|A Chain A, Cask-4m Cam Kinase Domain, Mn2+
pdb|3MFU|A Chain A, Cask-4m Cam Kinase Domain, Amppnp-Mn2+
Length = 351
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 23/217 (10%)
Query: 343 FEDLLRAPAELLGRGKHGSLYRVV-LDDGLMLAVKRL------RDWSISSEDFKNRMQKI 395
FED+ E++G+G + R + + G AVK + +S+ED K
Sbjct: 22 FEDVYEL-CEVIGKGAFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASIC 80
Query: 396 DHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSL-FNLLHGSENGQSFDWGSRLRVAACVA 454
+KHP+++ L Y S +V+E+ L F ++ ++ G + +
Sbjct: 81 HMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQIL 140
Query: 455 KALA------LIHEELREDGIAHGXXXXXXXXXXXXMEPCIS--EYGLIVTENHDQSFLA 506
+AL +IH +++ + + I E GL+
Sbjct: 141 EALRYCHDNNIIHRDVKPENVLLASKENSAPVKLGDFGVAIQLGESGLVAGGR------V 194
Query: 507 QTSSLKINDISNQMCSTIKADVYGFGVILLELLTGKL 543
T ++ + DV+G GVIL LL+G L
Sbjct: 195 GTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCL 231
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 61/228 (26%)
Query: 345 DLLRAPAELLGRGKHGSLYRVV----LDDGLMLAVKRLRDWSI-----SSEDFKNRMQKI 395
+LLR +LG+G +G +++V + G + A+K L+ I + K +
Sbjct: 20 ELLR----VLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNIL 75
Query: 396 DHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSF----DWGSRLRVAA 451
+ VKHP ++ L+Y +Q G L+ +L G+ F G + A
Sbjct: 76 EEVKHPFIVD------------LIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTA 123
Query: 452 CVAKA---LALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQT 508
C A +AL H L + GI + ++++GL HD +
Sbjct: 124 CFYLAEISMALGH--LHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGT----- 176
Query: 509 SSLKINDISNQMCSTIK---------------ADVYGFGVILLELLTG 541
+++ C TI+ D + G ++ ++LTG
Sbjct: 177 -------VTHXFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTG 217
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 61/228 (26%)
Query: 345 DLLRAPAELLGRGKHGSLYRVV----LDDGLMLAVKRLRDWSI-----SSEDFKNRMQKI 395
+LLR +LG+G +G +++V + G + A+K L+ I + K +
Sbjct: 20 ELLR----VLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNIL 75
Query: 396 DHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSF----DWGSRLRVAA 451
+ VKHP ++ L+Y +Q G L+ +L G+ F G + A
Sbjct: 76 EEVKHPFIVD------------LIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTA 123
Query: 452 CVAKA---LALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGLIVTENHDQSFLAQT 508
C A +AL H L + GI + ++++GL HD +
Sbjct: 124 CFYLAEISMALGH--LHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGT----- 176
Query: 509 SSLKINDISNQMCSTIK---------------ADVYGFGVILLELLTG 541
+++ C TI+ D + G ++ ++LTG
Sbjct: 177 -------VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTG 217
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 116 QEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSELPDLSRISGLLTFF 175
+ ++N L L + NK+S L+KL NL+ L I+ NN S++ L ++ L
Sbjct: 171 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL-IATNNQISDITPLGILTNLDELS 227
Query: 176 AENNQLRGGIPEFDFSNLLQFNVSNNNLS--GPVPGVNG----RLGADSFSGNPGLCG 227
NQL+ +NL +++NN +S P+ G+ +LGA+ S L G
Sbjct: 228 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 285
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 352 ELLGRGKHGSLYRVV-LDDGLMLAVKRLRDWSISS-EDFKNRMQKIDHVKHPNVLPPLAY 409
E LG G G ++RV G A K + S E + +Q + ++HP ++
Sbjct: 57 EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDA 116
Query: 410 YCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALALIHE 462
+ E +++YE+ G LF + N S D C K L +HE
Sbjct: 117 FEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVC--KGLCHMHE 167
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 116 QEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSSELPDLSRISGLLTFF 175
+ ++N L L + NK+S L+KL NL+ L I+ NN S++ L ++ L
Sbjct: 170 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL-IATNNQISDITPLGILTNLDELS 226
Query: 176 AENNQLRGGIPEFDFSNLLQFNVSNNNLS--GPVPGVNG----RLGADSFSGNPGLCG 227
NQL+ +NL +++NN +S P+ G+ +LGA+ S L G
Sbjct: 227 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 284
>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
Length = 361
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 343 FEDLLRAPAELLGRGKHGSLYRVV-LDDGLMLAVKRL------RDWSISSEDFKNRMQKI 395
FED+ E++G+G + R + + G AVK + +S+ED K
Sbjct: 24 FEDVYEL-CEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASIC 82
Query: 396 DHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSL-FNLLHGSENGQSFDWGSRLRVAACVA 454
+KHP+++ L Y S +V+E+ L F ++ ++ G + +
Sbjct: 83 HMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQIL 142
Query: 455 KALALIHE 462
+AL H+
Sbjct: 143 EALRYCHD 150
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 78/205 (38%), Gaps = 52/205 (25%)
Query: 369 DGLMLAVKRLRDWSISS-EDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGS 427
D +++AVK L++ S S+ +DF+ + + ++H +++ + L+V+EY +G
Sbjct: 70 DKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGD 129
Query: 428 L----------FNLLHGSEN--------GQSFDWGSRLRVAACVAKALALIHEELREDGI 469
L LL G E+ GQ S++ L +H +L
Sbjct: 130 LNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDL----- 184
Query: 470 AHGXXXXXXXXXXXXMEPCISEYGLIV----------TENHDQSFLAQTSSLKINDISNQ 519
C+ GL+V + D + + L I + +
Sbjct: 185 --------------ATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPE 230
Query: 520 MC----STIKADVYGFGVILLELLT 540
T ++DV+ FGV+L E+ T
Sbjct: 231 SILYRKFTTESDVWSFGVVLWEIFT 255
>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0G|B Chain B, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0H|A Chain A, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0H|B Chain B, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0I|A Chain A, Cask Cam-Kinase Domain- 3'-Amp Complex, P212121 Form
Length = 351
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 343 FEDLLRAPAELLGRGKHGSLYRVV-LDDGLMLAVKRL------RDWSISSEDFKNRMQKI 395
FED+ E++G+G + R + + G AVK + +S+ED K
Sbjct: 22 FEDVYEL-CEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASIC 80
Query: 396 DHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSL-FNLLHGSENGQSFDWGSRLRVAACVA 454
+KHP+++ L Y S +V+E+ L F ++ ++ G + +
Sbjct: 81 HMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQIL 140
Query: 455 KALALIHE 462
+AL H+
Sbjct: 141 EALRYCHD 148
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 122 KQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNFSS-ELPDLSRISGLLTFFAENNQ 180
+ +T LY+ N+ + +P LS +L +D+SNN S+ S ++ LLT N+
Sbjct: 31 RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 181 LRGGIPEFDFSNL 193
LR IP F L
Sbjct: 90 LR-CIPPRTFDGL 101
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 369 DGLMLAVKRLRDWSISS-EDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGS 427
D +++AVK L++ S S+ +DF+ + + ++H +++ + L+V+EY +G
Sbjct: 41 DKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGD 100
Query: 428 LFNLL--HGSE 436
L L HG +
Sbjct: 101 LNRFLRSHGPD 111
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 369 DGLMLAVKRLRDWSISS-EDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGS 427
D +++AVK L++ S S+ +DF+ + + ++H +++ + L+V+EY +G
Sbjct: 47 DKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGD 106
Query: 428 LFNLL--HGSE 436
L L HG +
Sbjct: 107 LNRFLRSHGPD 117
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNF 158
+L VL + N + + +L LY+ N+L P L+ L++L ++NN+
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
Query: 159 SSELPD--LSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNN 202
+ELP L+ + L T + N L F S+LL F + N
Sbjct: 161 -TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 105 LEENNIAGTVSQEISNCKQLTHLYVGRNKLSG-NLPDSLSKLNNLKRLDISN 155
L +N ++G + C LTHL + NK+ + + L KL NLK LD+ N
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 354 LGRGKHGSLYRVV-LDDGLMLAVKRLRDWSISSEDFKNR---MQKIDHVK---HPNVLPP 406
+GRG+ +YR L DG+ +A+K+++ + + D K R +++ID +K HPNV+
Sbjct: 40 IGRGQFSEVYRAACLLDGVPVALKKVQIFDLM--DAKARADCIKEIDLLKQLNHPNVIKY 97
Query: 407 LAYYCSKQEKLLVYEYQPNGSLFNLL 432
A + E +V E G L ++
Sbjct: 98 YASFIEDNELNIVLELADAGDLSRMI 123
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 86 SGILDTTSVCKTQSLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKL 145
SG L++ T+++ L L N I + ++ C L L + N ++ DS S L
Sbjct: 40 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Query: 146 NNLKRLDISNNNFS 159
+L+ LD+S N S
Sbjct: 100 GSLEHLDLSYNYLS 113
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNF 158
+L VL + N + + +L LY+ N+L P L+ L++L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 159 SSELPD--LSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNN 202
+ELP L+ + L T + N L F S+LL F + N
Sbjct: 161 -TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNF 158
+L VL + N + + +L LY+ N+L P L+ L++L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 159 SSELPD--LSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNN 202
+ELP L+ + L T + N L F S+LL F + N
Sbjct: 161 -TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNF 158
+L VL + N + + +L LY+ N+L P L+ L++L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 159 SSELPD--LSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNN 202
+ELP L+ + L T + N L F S+LL F + N
Sbjct: 161 -TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN 437
+S E+ + + + ++HPN++ + +K + +L+ E G LF+ L E+
Sbjct: 50 VSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKES 104
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 339 NKLKFEDLLRAPAEL------LGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFK-- 389
KL + L + P E+ LG G +GS+Y+ + + G ++A+K++ S E K
Sbjct: 16 KKLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEI 75
Query: 390 NRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLL 432
+ MQ+ D P+V+ Y + +V EY GS+ +++
Sbjct: 76 SIMQQCD---SPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDII 115
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN 437
+S E+ + + + ++HPN++ + +K + +L+ E G LF+ L E+
Sbjct: 71 VSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKES 125
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 99 SLVVLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSGNLPDSLSKLNNLKRLDISNNNF 158
+L VL + N + + +L LY+ N+L P L+ L++L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 159 SSELPD--LSRISGLLTFFAENNQLRGGIPEFDFSNLLQFNVSNNN 202
+ELP L+ + L T + N L F S+LL F + N
Sbjct: 161 -TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|B Chain B, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|C Chain C, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|D Chain D, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|E Chain E, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|F Chain F, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|G Chain G, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|H Chain H, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
Length = 676
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 84/229 (36%), Gaps = 27/229 (11%)
Query: 352 ELLGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNR------MQKIDHVKHPNVL 404
E LG G G + R + D G +A+K+ R +S KNR +Q + + HPNV+
Sbjct: 20 ERLGTGGFGYVLRWIHQDTGEQVAIKQCRQ-ELSP---KNRERWCLEIQIMKKLNHPNVV 75
Query: 405 PP------LAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALA 458
L LL EY G L L+ EN G + + ++ AL
Sbjct: 76 SAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALR 135
Query: 459 LIHEELREDGIAHGXXXXXXXXXXXXMEPCISEY-GLIVTENHDQSFLAQ----TSSLKI 513
+HE + I H + I + L + DQ L T
Sbjct: 136 YLHE----NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLA 191
Query: 514 NDISNQMCSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREE 562
++ Q T+ D + FG + E +TG + W H VRE+
Sbjct: 192 PELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQW-HGKVREK 239
>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta
(I4122)
Length = 677
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 84/229 (36%), Gaps = 27/229 (11%)
Query: 352 ELLGRGKHGSLYRVVLDD-GLMLAVKRLRDWSISSEDFKNR------MQKIDHVKHPNVL 404
E LG G G + R + D G +A+K+ R +S KNR +Q + + HPNV+
Sbjct: 21 ERLGTGGFGYVLRWIHQDTGEQVAIKQCRQ-ELSP---KNRERWCLEIQIMKKLNHPNVV 76
Query: 405 PP------LAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSRLRVAACVAKALA 458
L LL EY G L L+ EN G + + ++ AL
Sbjct: 77 SAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALR 136
Query: 459 LIHEELREDGIAHGXXXXXXXXXXXXMEPCISEY-GLIVTENHDQSFLAQ----TSSLKI 513
+HE + I H + I + L + DQ L T
Sbjct: 137 YLHE----NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLA 192
Query: 514 NDISNQMCSTIKADVYGFGVILLELLTGKLVQNNGFNLATWVHSVVREE 562
++ Q T+ D + FG + E +TG + W H VRE+
Sbjct: 193 PELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQW-HGKVREK 240
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 341 LKFEDLLRAPAEL--LGRGKHGSLYRVVLDDGLMLAVKRLR----DWSISSEDFKNRMQK 394
L F+ L+ +L +G G +G +Y+ G ++A+KR+R D I S + +
Sbjct: 14 LYFQGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIRE-ISL 72
Query: 395 IDHVKHPNVLPPLAYYCSKQEKLLVYEY 422
+ + HPN++ + S++ LV+E+
Sbjct: 73 LKELHHPNIVSLIDVIHSERCLTLVFEF 100
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 341 LKFEDLLRAPAEL--LGRGKHGSLYRVVLDDGLMLAVKRLR----DWSISSEDFKNRMQK 394
L F+ L+ +L +G G +G +Y+ G ++A+KR+R D I S + +
Sbjct: 14 LYFQGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIRE-ISL 72
Query: 395 IDHVKHPNVLPPLAYYCSKQEKLLVYEY 422
+ + HPN++ + S++ LV+E+
Sbjct: 73 LKELHHPNIVSLIDVIHSERCLTLVFEF 100
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 83/206 (40%), Gaps = 27/206 (13%)
Query: 352 ELLGRGKHGSLYRVVLDDG-----LMLAVKRLRDWSISSE--DFKNRMQKIDHVKHPNVL 404
+++G G+ G +Y+ +L + +A+K L+ + DF + H N++
Sbjct: 50 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNII 109
Query: 405 PPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQS-FDWGSRLRVAACVAKALA---LI 460
+ +++ EY NG+L L + S LR A K LA +
Sbjct: 110 RLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYV 169
Query: 461 HEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSFLAQTSSLKINDISN 518
H +L I +S++GL ++ ++ + ++ + I +
Sbjct: 170 HRDLAARNILVNSNLVCK----------VSDFGLSRVLEDDPEATYTTSGGKIPIRWTAP 219
Query: 519 QMCS----TIKADVYGFGVILLELLT 540
+ S T +DV+ FG+++ E++T
Sbjct: 220 EAISYRKFTSASDVWSFGIVMWEVMT 245
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 383 ISSEDFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSEN 437
+S E+ + + + ++HPN++ + +K + +L+ E G LF+ L E+
Sbjct: 57 VSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKES 111
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 12/160 (7%)
Query: 387 DFKNRMQKIDHVKHPNVLPPLAYYCSKQEKLLVYEYQPNGSLFNLLHGSENGQSFDWGSR 446
DF + + HPN++ + ++V EY NGSL L + +GQ
Sbjct: 96 DFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLR-THDGQF-----T 149
Query: 447 LRVAACVAKALALIHEELREDGIAHGXXXXXXXXXXXXMEPCISEYGL--IVTENHDQSF 504
+ + + + L + G H + +S++GL ++ ++ D ++
Sbjct: 150 IMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAY 209
Query: 505 LAQTSSLKINDISNQMCS----TIKADVYGFGVILLELLT 540
+ I + + + + +DV+ FGV++ E+L
Sbjct: 210 TTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLA 249
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 79 VLD-GFNLSGILDTTSVCKTQSLV-VLSLEENNIAGTVSQEISNCKQLTHLYVGRNKLSG 136
+LD GFN L+ +C+ L+ VL+L+ N ++ Q C LT L + N +
Sbjct: 53 ILDAGFNSISKLEP-ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHK 111
Query: 137 NLPDSLSKLNNLKRLDISNNNFSS 160
+ NL +LD+S+N SS
Sbjct: 112 IKSNPFKNQKNLIKLDLSHNGLSS 135
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 354 LGRGKHGSLYRVVL------DDGLMLAVKRLRDWSISS-EDFKNRMQKIDHVKHPNVLPP 406
LG G G ++ D +++AVK L+D S ++ +DF + + +++H +++
Sbjct: 21 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 80
Query: 407 LAYYCSKQEKLLVYEYQPNGSLFNLL--HGSE 436
++V+EY +G L L HG +
Sbjct: 81 YGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPD 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,689,413
Number of Sequences: 62578
Number of extensions: 532878
Number of successful extensions: 2458
Number of sequences better than 100.0: 361
Number of HSP's better than 100.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 1836
Number of HSP's gapped (non-prelim): 579
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)