BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006904
(626 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 155/323 (47%), Gaps = 27/323 (8%)
Query: 32 RKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYN 91
+ L+NG+ ++ + IHYPR + WE I+ K G + I YVFWN HEP G Y+
Sbjct: 12 KNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYD 71
Query: 92 FEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRA 151
F G+ D+ F + Q+ G Y +R GPYVCAEW GG P WL I R + +
Sbjct: 72 FAGQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDPYYXER 131
Query: 152 MQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMG 211
++ F ++ + +L S+GG II Q+ENEYGA Y++ + G
Sbjct: 132 VKLFLNEVGKQLA--DLQISKGGNIIXVQVENEYGA-----FGIDKPYISEIRDXVKQAG 184
Query: 212 -TGVPWVMCK-----EEDAPDPV---INSCNGFYCDA----FTPNQPYKPTIWTEAWSGW 258
TGVP C E +A D + IN G D +P P +E WSGW
Sbjct: 185 FTGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGW 244
Query: 259 FTEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPF-----ITTSY 313
F +G R ++L + + SF + Y HGGT+FG G F TSY
Sbjct: 245 FDHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFPNFSPTCTSY 303
Query: 314 DYDAPIDEYGLIRQPKYGHLKEL 336
DYDAPI+E G + PKY ++ L
Sbjct: 304 DYDAPINESGKV-TPKYLEVRNL 325
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 184/410 (44%), Gaps = 42/410 (10%)
Query: 28 VTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSP 87
+ Y R + L +GQ SGSIHY R W+D + K K GL+ I+TYV WN HEP P
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 88 GNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEP 147
G Y F +D+ F++ + GL LR GPY+CAEW GG P WL I R+ +
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 148 FKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAK-M 206
+ A+ + ++ MK L GGP+I Q+ENEYG+ A +Y+ + K
Sbjct: 131 YLAAVDKWLGVLLPKMKP--LLYQNGGPVITVQVENEYGSYF----ACDFDYLRFLQKRF 184
Query: 207 AVEMGTGVPWVMCKEEDAPDPVIN--SCNGFY-----------CDAFTPN---QPYKPTI 250
+G V V+ + A + + G Y DAF +P P I
Sbjct: 185 RHHLGDDV--VLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLI 242
Query: 251 WTEAWSGWFTEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFG--RSAGGPF 308
+E ++GW +G P + +A + + +G S +N YM+ GGTNF A P+
Sbjct: 243 NSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGAS-VNLYMFIGGTNFAYWNGANSPY 301
Query: 309 IT--TSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERALVSADPIVTSLGGFQQAHVY 366
TSYDYDAP+ E G + + KY L+ + I+ E+ V PI S F V
Sbjct: 302 AAQPTSYDYDAPLSEAGDLTE-KYFALRNI---IQKFEK--VPEGPIPPSTPKFAYGKVT 355
Query: 367 SSESGDCAAFLSNYDTKSAARVLFN------NMHYNLPPWSISVLPDCRN 410
+ A L + L+ HY + ++ DC N
Sbjct: 356 LEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQDCSN 405
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 172/373 (46%), Gaps = 49/373 (13%)
Query: 32 RKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYN 91
R ++G+ + SG+IHY R P+ W + K G + +ETYV WN+HEP G ++
Sbjct: 7 RDDFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFH 66
Query: 92 FEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRA 151
FEG DL +F++ Q GLYA +R P++CAEW FGG P WL + R+ + + A
Sbjct: 67 FEGDLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWL-LTKNMRIRSSDPAYIEA 125
Query: 152 MQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMG 211
+ + ++++ + L GG I++ Q+ENEYG+ + Y+ ++ E G
Sbjct: 126 VGRYYDQLLPRLVPRLL--DNGGNILMMQVENEYGSYGE-----DKAYLRAIRQLMEECG 178
Query: 212 TGVPWVMCKEEDAP------DPVINSCNGFYCDAFTPNQPYK---------------PTI 250
P D P + + F F PY P +
Sbjct: 179 VTCPLFTS---DGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLM 235
Query: 251 WTEAWSGWFTEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNF----GRSAGG 306
E W GWF + PI R ++LA A +++G IN YM+HGGTNF G SA G
Sbjct: 236 CMEFWDGWFNRWKEPIITRDPKELADAVREVLEQGS--INLYMFHGGTNFGFMNGCSARG 293
Query: 307 PFI---TTSYDYDAPIDEYG-------LIRQPKYGHLKELHRAIKMCERAL-VSADPIVT 355
TSYDYDA +DE G +++ H E + + + ++ + A P+V
Sbjct: 294 TLDLPQVTSYDYDALLDEEGNPTAKYLAVKKMMATHFSEYPQLEPLYKESMELDAIPLVE 353
Query: 356 SLGGFQQAHVYSS 368
+ F+ SS
Sbjct: 354 KVSLFETLDSLSS 366
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/358 (31%), Positives = 164/358 (45%), Gaps = 40/358 (11%)
Query: 28 VTYDRKALLINGQRRILFSGSIH-YPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPS 86
VT+D ++ +NG+R ++FSG +H Y ++ D+ +K K G + + YV W + E +
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 87 PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNE 146
PG+Y+ EG +DL F ++AG+Y R GPY+ AE + GGFP WL+ V GI RT +E
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LRTSDE 124
Query: 147 PFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEY-GAQSKLLGAAGHNYMTWAAK 205
+ +A + I + + + GGPIIL Q ENEY GA G +YM +
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 206 MAVEMGTGVPWVM----CKEEDAPDPVINSCN---------GFYC--------------- 237
A + G VP++ +AP + + GF C
Sbjct: 183 HARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242
Query: 238 -DAFTPNQPYKPTIWTEAWSGWFTEFGGPIHQRPVQDLAFAAARFIQK-----GGSFINY 291
+ P P E G F +GG + L R K G +F+N
Sbjct: 243 HTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNL 302
Query: 292 YMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERALVS 349
YM GGTN+G + G P TSYDY + I E I + KY LK L K+ LV+
Sbjct: 303 YMIFGGTNWG-NLGHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLVA 359
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 129/461 (27%), Positives = 197/461 (42%), Gaps = 53/461 (11%)
Query: 28 VTYDRKALLINGQRRILFSGSIHYPR-STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPS 86
VT+D +L ++G+R ++FSG +H R P ++ D+ K K G + + YV W + E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 87 PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNE 146
PG + +G + L F + KAG+Y R GPY+ AE + GGFP WL+ V G RTD
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAP 144
Query: 147 PFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKM 206
+ A + I +++ + + GGP+IL Q ENEY ++ + YM +
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 207 AVEMGTGVPWV----MCKEEDAPDPVINSCN---------GFYC-------DAFTPN--- 243
A G VP + AP + S + GF C D P
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWR 262
Query: 244 ------QPYKPTIWTEAWSGWFTEFGGPIHQRPVQDLAFAAARFIQK-----GGSFINYY 292
P P E G F FGG ++ + R K G + N Y
Sbjct: 263 QDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIY 322
Query: 293 MYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERALVSADP 352
M GGTN+G + G P TSYDY A I E I + KY LK + +K+ ++A P
Sbjct: 323 MTFGGTNWG-NLGHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSP-GYITATP 380
Query: 353 IVTSLGGFQQAH------VYSSESGDC----AAFLSNYDTKS-AARVLFNNMHYNLPPWS 401
+ G + + + + ESGD A S+ DT S ++ + +P
Sbjct: 381 ENATQGVYSDSQNIVITPLLAKESGDFFVVRHANYSSTDTASYTVKLPTSAGDLTIPQLG 440
Query: 402 ISVLPDCRNVVFNTAKVGVQTSQMEMLPANAEMFSWESYFE 442
S+ R+ + V + +L + AE+F+W + E
Sbjct: 441 GSLTLTGRDSKIHVTDYPV--GKFTLLYSTAEIFTWNEFAE 479
>pdb|3NYD|A Chain A, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
pdb|3NYD|B Chain B, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
Length = 316
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 19/132 (14%)
Query: 36 LINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR 95
LI + ++ F + R T +IQ D G+ E + W+ EPS GN+NF G
Sbjct: 9 LIKARGKVYFGVATDQNRLTTGKNAAIIQA--DFGMVWPENSMKWDATEPSQGNFNFAGA 66
Query: 96 YDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG-ISFRTDNEPFKRAMQG 154
LV + + K IG GG VW +P +S TD M+
Sbjct: 67 DYLVNWAQQNGKL-------IG---------GGMLVWHSQLPSWVSSITDKNTLTNVMKN 110
Query: 155 FTEKIVNLMKSE 166
++ K +
Sbjct: 111 HITTLMTRYKGK 122
>pdb|1TUX|A Chain A, High Resolution Crystal Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 301
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 36 LINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR 95
LI+ + ++ F + R T +IQ D G E + W+ EPS GN+NF G
Sbjct: 9 LIDARGKVYFGVATDQNRLTTGKNAAIIQA--DFGQVTPENSMKWDATEPSQGNFNFAGA 66
Query: 96 YDLVRFIK 103
LV + +
Sbjct: 67 DYLVNWAQ 74
>pdb|1K6A|A Chain A, Structural Studies On The Mobility In The Active Site Of
The Thermoascus Aurantiacus Xylanase I
Length = 303
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 36 LINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR 95
LI + ++ F + R T +IQ D G E + W+ EPS GN+NF G
Sbjct: 9 LIKARGKVYFGVATDQNRLTTGKNAAIIQA--DFGQVTPENSMKWDATEPSQGNFNFAGA 66
Query: 96 YDLVRFIK 103
LV + +
Sbjct: 67 DYLVNWAQ 74
>pdb|1GOK|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Crystal Form Ii
pdb|1GOO|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Cryocooled Glycerol Complex
pdb|1GOM|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Crystal Form I
pdb|1GOR|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Xylobiose Complex At 100 K
pdb|1GOQ|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-Room
Temperature Xylobiose Complex
Length = 303
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 36 LINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR 95
LI + ++ F + R T +IQ D G E + W+ EPS GN+NF G
Sbjct: 9 LIKARGKVYFGVATDQNRLTTGKNAAIIQA--DFGQVTPENSMKWDATEPSQGNFNFAGA 66
Query: 96 YDLVRFIK 103
LV + +
Sbjct: 67 DYLVNWAQ 74
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 377 LSNYDTKSAARVLFNNMHYNLPPWSISV-LPDCRNVVFNTAKVGVQ 421
L N+DT A +FN + Y+ P W I V +P+ + + F K Q
Sbjct: 606 LGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIKKDSQ 651
>pdb|3O2L|A Chain A, Crystal Structure Of An Inactive Kemp Elimination Design
Hg-1
Length = 317
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 80 WNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEW 124
W+ EPS GN+NF G LV + + K + H +G + W
Sbjct: 52 WDATEPSQGNFNFAGADYLVNWAQQNGKL-IRGHTLVGHFYLPSW 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,365,365
Number of Sequences: 62578
Number of extensions: 925960
Number of successful extensions: 2045
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2018
Number of HSP's gapped (non-prelim): 21
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)