Query 006904
Match_columns 626
No_of_seqs 281 out of 1382
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 16:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 4E-176 8E-181 1488.1 57.3 619 4-626 6-625 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 3E-154 6E-159 1265.4 29.9 545 25-626 17-563 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 8.2E-90 1.8E-94 725.9 20.6 297 34-339 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 2.2E-34 4.7E-39 325.1 9.3 293 28-329 1-336 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 2.3E-20 5.1E-25 201.5 15.7 265 49-342 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.3 2.5E-10 5.5E-15 119.7 19.8 191 28-260 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.1 2.4E-08 5.3E-13 114.8 25.1 160 26-220 276-449 (604)
8 PF00150 Cellulase: Cellulase 98.9 1.6E-08 3.5E-13 103.4 14.4 160 38-219 4-171 (281)
9 PF13364 BetaGal_dom4_5: Beta- 98.9 1.1E-08 2.3E-13 93.0 9.0 87 456-549 21-110 (111)
10 PRK10340 ebgA cryptic beta-D-g 98.8 1.6E-07 3.6E-12 113.7 19.1 261 26-342 318-604 (1021)
11 PRK09525 lacZ beta-D-galactosi 98.8 2E-07 4.4E-12 112.9 19.7 258 26-342 334-630 (1027)
12 COG3250 LacZ Beta-galactosidas 98.7 5.4E-07 1.2E-11 106.0 18.3 120 26-187 284-409 (808)
13 PF02837 Glyco_hydro_2_N: Glyc 98.4 3E-06 6.4E-11 81.1 11.4 104 461-570 59-164 (167)
14 smart00633 Glyco_10 Glycosyl h 98.3 2.6E-06 5.7E-11 87.8 9.2 117 80-221 3-126 (254)
15 PF03198 Glyco_hydro_72: Gluca 98.1 3.2E-05 7E-10 81.6 13.9 156 23-216 6-179 (314)
16 PLN00197 beta-amylase; Provisi 98.1 8.7E-06 1.9E-10 90.7 9.9 114 55-181 125-272 (573)
17 PLN02705 beta-amylase 98.1 9.4E-06 2E-10 91.0 10.1 115 55-181 266-414 (681)
18 PLN02905 beta-amylase 98.1 1.1E-05 2.4E-10 90.7 10.2 115 55-181 284-432 (702)
19 PLN02803 beta-amylase 98.1 1.1E-05 2.3E-10 89.8 9.8 114 55-181 105-252 (548)
20 PLN02801 beta-amylase 98.1 1.3E-05 2.9E-10 88.6 10.1 115 55-181 35-183 (517)
21 PLN02161 beta-amylase 98.1 1.7E-05 3.6E-10 87.9 10.3 114 55-181 115-262 (531)
22 TIGR03356 BGL beta-galactosida 97.9 3.3E-05 7.1E-10 85.7 8.8 96 57-164 54-150 (427)
23 PF01373 Glyco_hydro_14: Glyco 97.6 7E-05 1.5E-09 81.5 6.0 74 58-135 17-96 (402)
24 PF13204 DUF4038: Protein of u 97.4 0.00083 1.8E-08 70.9 10.6 225 32-286 2-274 (289)
25 PF00331 Glyco_hydro_10: Glyco 97.4 0.00033 7.2E-09 74.9 7.7 159 44-222 11-180 (320)
26 PF07745 Glyco_hydro_53: Glyco 97.0 0.002 4.3E-08 69.3 8.5 105 60-187 27-137 (332)
27 PF00232 Glyco_hydro_1: Glycos 97.0 0.00091 2E-08 74.8 5.8 97 56-164 57-155 (455)
28 COG2730 BglC Endoglucanase [Ca 96.9 0.0035 7.6E-08 69.3 8.9 119 55-187 66-193 (407)
29 PRK10340 ebgA cryptic beta-D-g 96.9 0.0041 8.8E-08 76.2 10.2 93 472-573 111-207 (1021)
30 PRK09525 lacZ beta-D-galactosi 96.8 0.0042 9.1E-08 76.1 10.0 93 471-572 121-218 (1027)
31 PF02055 Glyco_hydro_30: O-Gly 96.8 0.026 5.5E-07 64.1 15.5 334 40-403 74-491 (496)
32 COG3693 XynA Beta-1,4-xylanase 96.7 0.0094 2E-07 63.3 10.4 133 66-221 55-194 (345)
33 PRK10150 beta-D-glucuronidase; 96.7 0.0081 1.8E-07 69.5 11.0 100 468-574 63-181 (604)
34 PF14488 DUF4434: Domain of un 96.7 0.027 5.9E-07 54.9 13.0 134 52-216 15-157 (166)
35 PRK09852 cryptic 6-phospho-bet 96.5 0.003 6.6E-08 71.1 5.1 97 56-164 70-169 (474)
36 PRK15014 6-phospho-beta-glucos 96.5 0.0032 7E-08 71.0 5.1 96 57-164 69-167 (477)
37 COG3867 Arabinogalactan endo-1 96.4 0.025 5.4E-07 59.5 10.5 125 59-202 65-198 (403)
38 PLN02998 beta-glucosidase 96.2 0.0053 1.1E-07 69.6 5.2 101 56-164 81-183 (497)
39 PRK13511 6-phospho-beta-galact 96.2 0.0059 1.3E-07 68.7 5.4 97 57-161 54-151 (469)
40 PRK09593 arb 6-phospho-beta-gl 96.2 0.0073 1.6E-07 68.2 6.0 100 57-164 73-175 (478)
41 smart00812 Alpha_L_fucos Alpha 96.1 2.3 4.9E-05 47.0 25.0 251 49-353 76-343 (384)
42 PLN02814 beta-glucosidase 96.1 0.0064 1.4E-07 69.0 5.1 101 56-164 76-178 (504)
43 PRK09589 celA 6-phospho-beta-g 96.1 0.0081 1.8E-07 67.8 5.6 101 56-164 66-169 (476)
44 TIGR01233 lacG 6-phospho-beta- 96.0 0.0089 1.9E-07 67.3 5.5 96 57-164 53-149 (467)
45 PLN02849 beta-glucosidase 95.9 0.011 2.4E-07 67.2 5.5 101 56-164 78-180 (503)
46 PF14871 GHL6: Hypothetical gl 95.4 0.085 1.8E-06 49.6 8.8 99 61-164 4-124 (132)
47 COG2723 BglB Beta-glucosidase/ 94.6 0.05 1.1E-06 60.7 5.7 101 56-164 58-161 (460)
48 PF01229 Glyco_hydro_39: Glyco 93.0 0.45 9.8E-06 53.9 9.7 142 46-206 28-186 (486)
49 TIGR01515 branching_enzym alph 92.7 1.4 3E-05 51.5 13.4 53 64-116 164-226 (613)
50 KOG2230 Predicted beta-mannosi 92.5 1.3 2.8E-05 50.5 11.9 184 32-255 327-543 (867)
51 TIGR00542 hxl6Piso_put hexulos 91.8 2.1 4.6E-05 44.4 12.3 131 56-214 15-149 (279)
52 PF02638 DUF187: Glycosyl hydr 91.6 1.8 3.9E-05 46.4 11.6 116 55-182 17-161 (311)
53 KOG0496 Beta-galactosidase [Ca 90.8 2 4.4E-05 49.8 11.6 82 471-562 558-640 (649)
54 PRK14706 glycogen branching en 90.6 3.3 7.1E-05 48.8 13.3 54 63-116 174-237 (639)
55 smart00642 Aamy Alpha-amylase 90.5 0.8 1.7E-05 44.5 7.0 67 56-122 18-96 (166)
56 PRK14705 glycogen branching en 89.7 70 0.0015 40.7 25.1 56 61-116 770-835 (1224)
57 PRK13210 putative L-xylulose 5 89.3 3.5 7.6E-05 42.5 11.2 131 58-214 17-149 (284)
58 cd00019 AP2Ec AP endonuclease 88.9 3.4 7.5E-05 42.8 10.8 97 57-182 10-107 (279)
59 PRK09936 hypothetical protein; 88.9 5.4 0.00012 42.4 12.0 59 52-116 33-92 (296)
60 PRK05402 glycogen branching en 88.3 5 0.00011 48.0 12.8 51 63-116 272-335 (726)
61 PRK12568 glycogen branching en 88.1 9.2 0.0002 45.7 14.7 55 61-118 274-341 (730)
62 PF13200 DUF4015: Putative gly 88.0 2.1 4.6E-05 46.1 8.6 112 55-167 11-137 (316)
63 COG3934 Endo-beta-mannanase [C 87.9 0.48 1E-05 53.0 3.7 157 35-209 4-169 (587)
64 PF05913 DUF871: Bacterial pro 87.1 1.4 2.9E-05 48.3 6.6 72 45-122 2-73 (357)
65 PLN02447 1,4-alpha-glucan-bran 86.8 16 0.00035 43.8 15.7 62 56-118 250-322 (758)
66 COG1649 Uncharacterized protei 85.2 6.2 0.00013 44.0 10.5 123 54-186 61-210 (418)
67 PF01261 AP_endonuc_2: Xylose 85.0 1.6 3.4E-05 42.3 5.3 125 63-214 1-128 (213)
68 PRK13209 L-xylulose 5-phosphat 84.4 7.5 0.00016 40.2 10.3 125 58-214 22-154 (283)
69 PRK01060 endonuclease IV; Prov 84.1 11 0.00023 39.0 11.3 94 59-180 14-109 (281)
70 TIGR03234 OH-pyruv-isom hydrox 83.3 15 0.00033 37.4 11.9 43 58-114 15-57 (254)
71 PF14307 Glyco_tran_WbsX: Glyc 83.3 16 0.00034 39.6 12.6 138 54-220 55-197 (345)
72 TIGR01531 glyc_debranch glycog 83.1 5 0.00011 50.7 9.6 111 34-150 104-234 (1464)
73 PRK09441 cytoplasmic alpha-amy 82.7 2.2 4.7E-05 48.3 5.9 61 56-116 18-101 (479)
74 cd06593 GH31_xylosidase_YicI Y 81.9 3.5 7.6E-05 43.7 6.9 69 54-122 21-92 (308)
75 TIGR02631 xylA_Arthro xylose i 81.8 16 0.00035 40.3 12.1 90 56-164 31-125 (382)
76 PF00128 Alpha-amylase: Alpha 81.5 1.6 3.4E-05 44.8 3.9 57 60-116 7-72 (316)
77 PF02065 Melibiase: Melibiase; 79.8 29 0.00063 38.6 13.3 90 49-138 50-148 (394)
78 PRK09856 fructoselysine 3-epim 79.2 27 0.00058 35.9 12.2 130 58-214 14-145 (275)
79 PF08531 Bac_rhamnosid_N: Alph 79.1 4.2 9.2E-05 39.6 5.9 54 491-545 4-64 (172)
80 PLN02960 alpha-amylase 78.8 63 0.0014 39.6 16.3 57 60-116 420-486 (897)
81 PRK09997 hydroxypyruvate isome 78.4 30 0.00065 35.4 12.2 49 49-114 10-58 (258)
82 PF13199 Glyco_hydro_66: Glyco 78.2 47 0.001 38.7 14.7 160 55-220 116-308 (559)
83 cd06592 GH31_glucosidase_KIAA1 76.6 8.3 0.00018 41.0 7.7 68 52-122 25-96 (303)
84 PRK12313 glycogen branching en 73.1 6.3 0.00014 46.3 6.2 55 62-116 176-240 (633)
85 TIGR02402 trehalose_TreZ malto 72.6 6.5 0.00014 45.4 6.0 53 61-116 115-180 (542)
86 cd04908 ACT_Bt0572_1 N-termina 72.5 14 0.00029 29.8 6.3 56 55-114 11-66 (66)
87 PRK09989 hypothetical protein; 72.3 41 0.0009 34.4 11.3 42 59-114 17-58 (258)
88 cd06595 GH31_xylosidase_XylS-l 71.9 17 0.00037 38.4 8.6 65 55-119 23-97 (292)
89 PF08308 PEGA: PEGA domain; I 71.7 5.9 0.00013 32.5 4.0 40 494-543 3-42 (71)
90 COG3623 SgaU Putative L-xylulo 71.5 30 0.00065 35.9 9.6 124 56-212 17-149 (287)
91 cd06589 GH31 The enzymes of gl 71.4 66 0.0014 33.4 12.7 65 55-120 22-90 (265)
92 TIGR02104 pulA_typeI pullulana 70.8 7.3 0.00016 45.5 6.0 55 61-116 168-249 (605)
93 PF02679 ComA: (2R)-phospho-3- 70.7 5.8 0.00013 41.2 4.6 52 56-117 83-134 (244)
94 cd06591 GH31_xylosidase_XylS X 70.6 9.9 0.00022 40.7 6.5 66 55-121 22-91 (319)
95 PF03659 Glyco_hydro_71: Glyco 69.3 21 0.00045 39.6 8.8 54 54-116 14-67 (386)
96 TIGR02403 trehalose_treC alpha 69.2 7.3 0.00016 44.9 5.5 59 56-116 26-95 (543)
97 PF03422 CBM_6: Carbohydrate b 69.2 58 0.0013 29.2 10.4 72 468-546 30-110 (125)
98 PRK10933 trehalose-6-phosphate 68.9 10 0.00022 43.9 6.6 55 59-116 35-101 (551)
99 PRK13398 3-deoxy-7-phosphohept 68.1 32 0.00069 36.2 9.5 83 26-116 14-98 (266)
100 PF01791 DeoC: DeoC/LacD famil 67.7 2.5 5.4E-05 43.1 1.1 53 60-115 79-131 (236)
101 PRK09505 malS alpha-amylase; R 67.1 10 0.00023 45.0 6.2 58 59-116 232-312 (683)
102 PRK14582 pgaB outer membrane N 66.5 26 0.00057 41.6 9.3 111 57-185 334-468 (671)
103 PRK10785 maltodextrin glucosid 66.4 11 0.00024 44.0 6.2 57 60-116 182-246 (598)
104 smart00518 AP2Ec AP endonuclea 66.0 45 0.00098 34.2 10.1 101 47-180 3-104 (273)
105 cd06602 GH31_MGAM_SI_GAA This 65.7 14 0.0003 40.0 6.5 74 49-123 13-93 (339)
106 cd06603 GH31_GANC_GANAB_alpha 65.5 15 0.00033 39.7 6.7 68 55-123 22-91 (339)
107 PF14307 Glyco_tran_WbsX: Glyc 65.2 71 0.0015 34.6 11.8 45 30-76 149-194 (345)
108 PF14587 Glyco_hydr_30_2: O-Gl 65.1 55 0.0012 36.3 10.8 136 67-221 57-227 (384)
109 TIGR02456 treS_nterm trehalose 65.1 13 0.00028 42.8 6.4 61 56-116 27-96 (539)
110 KOG0626 Beta-glucosidase, lact 64.9 13 0.00029 42.5 6.2 99 58-164 92-194 (524)
111 cd06598 GH31_transferase_CtsZ 64.8 17 0.00036 39.0 6.8 67 55-121 22-95 (317)
112 PF01261 AP_endonuc_2: Xylose 64.5 49 0.0011 31.7 9.5 104 57-188 27-137 (213)
113 PRK09875 putative hydrolase; P 64.2 42 0.00091 35.8 9.6 89 27-135 7-95 (292)
114 TIGR00677 fadh2_euk methylenet 61.9 33 0.00071 36.3 8.2 109 43-165 130-251 (281)
115 TIGR03849 arch_ComA phosphosul 61.8 17 0.00036 37.8 5.8 53 56-118 70-122 (237)
116 cd06599 GH31_glycosidase_Aec37 61.7 22 0.00048 38.0 7.1 66 56-121 28-98 (317)
117 cd06601 GH31_lyase_GLase GLase 61.6 56 0.0012 35.4 10.1 72 49-121 13-89 (332)
118 cd06600 GH31_MGAM-like This fa 61.1 19 0.00041 38.6 6.4 67 55-122 22-90 (317)
119 PLN02361 alpha-amylase 60.3 20 0.00043 39.9 6.5 60 57-116 26-96 (401)
120 COG3589 Uncharacterized conser 59.4 24 0.00051 38.4 6.6 72 45-123 4-76 (360)
121 PF11324 DUF3126: Protein of u 59.3 34 0.00074 28.4 6.0 40 492-531 15-59 (63)
122 PRK14510 putative bifunctional 58.9 14 0.0003 46.8 5.6 56 61-116 191-267 (1221)
123 PLN03059 beta-galactosidase; P 58.8 12 0.00026 45.2 4.7 70 471-548 620-716 (840)
124 TIGR02100 glgX_debranch glycog 58.2 46 0.001 39.7 9.5 54 63-116 190-265 (688)
125 PRK12677 xylose isomerase; Pro 58.1 66 0.0014 35.6 10.1 89 58-164 32-124 (384)
126 cd06568 GH20_SpHex_like A subg 57.8 42 0.00092 36.3 8.4 75 32-116 3-95 (329)
127 COG1306 Uncharacterized conser 57.7 22 0.00047 38.1 5.8 59 55-116 75-144 (400)
128 PRK09432 metF 5,10-methylenete 57.5 29 0.00062 37.1 6.9 88 62-166 168-267 (296)
129 cd06604 GH31_glucosidase_II_Ma 56.3 29 0.00062 37.5 6.8 73 49-122 13-90 (339)
130 PF06832 BiPBP_C: Penicillin-B 55.6 23 0.00049 30.5 4.8 44 493-543 34-78 (89)
131 COG5520 O-Glycosyl hydrolase [ 55.0 2.7E+02 0.0058 30.9 13.5 135 68-230 77-229 (433)
132 cd02742 GH20_hexosaminidase Be 54.9 40 0.00087 35.8 7.6 60 54-116 13-92 (303)
133 PRK08673 3-deoxy-7-phosphohept 54.0 47 0.001 36.2 7.9 82 26-116 80-164 (335)
134 PF14701 hDGE_amylase: glucano 53.9 85 0.0018 35.4 10.0 104 55-164 20-143 (423)
135 TIGR02401 trehalose_TreY malto 53.1 32 0.0007 41.8 7.0 64 55-118 14-87 (825)
136 PRK14511 maltooligosyl trehalo 53.0 31 0.00068 42.1 7.0 61 54-118 17-91 (879)
137 PRK14507 putative bifunctional 53.0 31 0.00067 45.0 7.2 61 54-118 755-829 (1693)
138 PF12876 Cellulase-like: Sugar 53.0 22 0.00049 30.6 4.4 46 173-218 8-62 (88)
139 COG0296 GlgB 1,4-alpha-glucan 52.0 30 0.00065 40.7 6.4 61 55-115 163-233 (628)
140 PF01120 Alpha_L_fucos: Alpha- 52.0 3.4E+02 0.0075 29.4 20.1 231 63-347 97-344 (346)
141 PF01055 Glyco_hydro_31: Glyco 52.0 42 0.00091 37.3 7.4 71 54-125 40-112 (441)
142 PLN02540 methylenetetrahydrofo 51.5 32 0.0007 40.0 6.5 90 62-165 161-259 (565)
143 TIGR00676 fadh2 5,10-methylene 51.2 67 0.0014 33.7 8.4 109 42-165 125-247 (272)
144 cd06565 GH20_GcnA-like Glycosy 49.6 94 0.002 33.1 9.3 66 55-123 15-87 (301)
145 cd06564 GH20_DspB_LnbB-like Gl 49.5 1.3E+02 0.0029 32.2 10.6 59 55-116 15-102 (326)
146 cd06416 GH25_Lys1-like Lys-1 i 49.4 47 0.001 32.8 6.6 88 46-136 55-157 (196)
147 cd06545 GH18_3CO4_chitinase Th 48.2 82 0.0018 32.3 8.4 91 87-209 36-127 (253)
148 PF04914 DltD_C: DltD C-termin 48.1 14 0.00031 34.7 2.5 52 97-166 37-88 (130)
149 TIGR02102 pullulan_Gpos pullul 47.3 32 0.00069 43.2 6.0 21 96-116 555-575 (1111)
150 PRK08645 bifunctional homocyst 47.1 59 0.0013 38.2 7.9 110 39-164 460-578 (612)
151 TIGR02103 pullul_strch alpha-1 46.8 32 0.0007 42.2 5.8 21 96-116 404-424 (898)
152 smart00481 POLIIIAc DNA polyme 46.7 72 0.0016 25.6 6.2 45 58-115 16-60 (67)
153 cd06597 GH31_transferase_CtsY 46.7 52 0.0011 35.7 6.9 73 49-121 13-110 (340)
154 PRK03705 glycogen debranching 45.7 1.2E+02 0.0025 36.2 10.1 55 62-116 184-262 (658)
155 PF02228 Gag_p19: Major core p 45.5 26 0.00055 30.3 3.3 37 55-108 20-56 (92)
156 PF11008 DUF2846: Protein of u 45.3 40 0.00086 30.6 4.9 41 501-548 40-80 (117)
157 KOG1065 Maltase glucoamylase a 44.7 45 0.00098 40.2 6.4 66 55-125 309-380 (805)
158 PLN00196 alpha-amylase; Provis 44.5 53 0.0011 36.9 6.7 57 60-116 47-112 (428)
159 PRK13209 L-xylulose 5-phosphat 44.5 1.2E+02 0.0027 31.2 9.1 104 53-186 53-161 (283)
160 KOG0683 Glutamine synthetase [ 43.8 26 0.00057 38.3 4.0 46 83-129 202-259 (380)
161 KOG1412 Aspartate aminotransfe 43.8 97 0.0021 33.7 8.0 118 56-221 132-250 (410)
162 PF12733 Cadherin-like: Cadher 43.7 71 0.0015 27.1 6.0 43 493-544 27-70 (88)
163 PRK12331 oxaloacetate decarbox 43.7 58 0.0013 36.9 6.9 56 49-116 88-143 (448)
164 TIGR00433 bioB biotin syntheta 43.3 41 0.00089 35.1 5.4 53 60-115 123-177 (296)
165 cd01299 Met_dep_hydrolase_A Me 40.8 69 0.0015 33.9 6.7 59 55-116 118-180 (342)
166 PLN02877 alpha-amylase/limit d 40.8 48 0.001 41.0 6.0 21 96-116 466-486 (970)
167 cd06547 GH85_ENGase Endo-beta- 40.6 50 0.0011 36.0 5.6 114 73-217 32-147 (339)
168 PRK10076 pyruvate formate lyas 39.4 1.6E+02 0.0034 29.9 8.7 126 55-214 52-209 (213)
169 COG1735 Php Predicted metal-de 38.7 1.2E+02 0.0026 32.7 7.8 153 26-221 16-173 (316)
170 PRK09856 fructoselysine 3-epim 38.1 46 0.00099 34.2 4.7 55 58-116 91-149 (275)
171 cd00311 TIM Triosephosphate is 37.9 63 0.0014 33.5 5.6 49 63-117 77-125 (242)
172 PRK09267 flavodoxin FldA; Vali 37.6 2E+02 0.0043 27.4 8.8 74 37-113 44-117 (169)
173 PF14606 Lipase_GDSL_3: GDSL-l 37.5 3.2E+02 0.007 27.2 10.2 124 40-210 2-131 (178)
174 PRK10658 putative alpha-glucos 37.4 93 0.002 37.1 7.6 66 55-122 281-351 (665)
175 PRK14040 oxaloacetate decarbox 37.2 64 0.0014 37.9 6.1 53 49-113 89-141 (593)
176 cd06594 GH31_glucosidase_YihQ 37.0 1.3E+02 0.0028 32.3 8.0 68 55-122 21-97 (317)
177 PRK00042 tpiA triosephosphate 36.7 64 0.0014 33.7 5.5 49 63-117 79-127 (250)
178 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.4 89 0.0019 32.8 6.6 50 54-115 88-137 (275)
179 TIGR01370 cysRS possible cyste 36.1 2.1E+02 0.0045 31.0 9.3 59 150-220 247-305 (315)
180 PRK06703 flavodoxin; Provision 35.4 2.2E+02 0.0047 26.6 8.5 103 37-164 46-148 (151)
181 cd00537 MTHFR Methylenetetrahy 35.3 1.1E+02 0.0023 31.9 6.9 102 49-165 139-250 (274)
182 cd02871 GH18_chitinase_D-like 34.8 1.7E+02 0.0036 31.3 8.4 87 97-212 61-147 (312)
183 cd04882 ACT_Bt0572_2 C-termina 34.1 87 0.0019 24.3 4.8 55 56-112 10-64 (65)
184 PLN02763 hydrolase, hydrolyzin 33.9 1.2E+02 0.0027 37.7 7.9 74 49-123 190-268 (978)
185 TIGR02455 TreS_stutzeri trehal 33.7 88 0.0019 37.1 6.4 75 55-133 76-175 (688)
186 cd06563 GH20_chitobiase-like T 33.4 2.2E+02 0.0047 31.1 9.2 60 54-116 15-106 (357)
187 cd02875 GH18_chitobiase Chitob 33.4 4.1E+02 0.0088 29.0 11.3 78 99-209 67-144 (358)
188 PF03102 NeuB: NeuB family; I 33.0 65 0.0014 33.4 4.8 64 54-117 53-121 (241)
189 TIGR01361 DAHP_synth_Bsub phos 32.9 1.5E+02 0.0032 31.1 7.5 82 26-116 12-96 (260)
190 TIGR00419 tim triosephosphate 32.8 91 0.002 31.6 5.7 44 63-116 74-117 (205)
191 KOG0622 Ornithine decarboxylas 32.5 79 0.0017 35.4 5.5 67 54-130 190-257 (448)
192 cd06418 GH25_BacA-like BacA is 32.4 1.6E+02 0.0034 29.9 7.4 91 55-167 50-141 (212)
193 PF01075 Glyco_transf_9: Glyco 32.4 40 0.00087 33.8 3.1 77 39-118 104-194 (247)
194 smart00758 PA14 domain in bact 32.2 2.4E+02 0.0052 25.6 8.0 65 473-546 47-112 (136)
195 cd03789 GT1_LPS_heptosyltransf 32.0 73 0.0016 32.8 5.0 76 42-120 124-211 (279)
196 PRK12858 tagatose 1,6-diphosph 31.8 51 0.0011 36.0 4.0 53 62-116 111-163 (340)
197 KOG4039 Serine/threonine kinas 31.6 77 0.0017 31.9 4.7 67 51-121 103-171 (238)
198 COG1082 IolE Sugar phosphate i 31.1 5.6E+02 0.012 25.8 11.5 52 55-115 13-64 (274)
199 PRK10422 lipopolysaccharide co 30.8 1.1E+02 0.0023 32.9 6.3 65 51-118 196-273 (352)
200 cd06562 GH20_HexA_HexB-like Be 30.7 3E+02 0.0066 29.9 9.7 63 54-116 15-90 (348)
201 TIGR00587 nfo apurinic endonuc 30.6 3.4E+02 0.0073 28.2 9.7 81 60-164 14-98 (274)
202 PRK10964 ADP-heptose:LPS hepto 30.5 92 0.002 32.9 5.6 76 40-118 178-264 (322)
203 cd04740 DHOD_1B_like Dihydroor 30.1 1.4E+02 0.0031 31.3 6.9 62 55-118 100-163 (296)
204 COG1523 PulA Type II secretory 30.0 77 0.0017 37.9 5.3 55 62-116 205-285 (697)
205 PRK13210 putative L-xylulose 5 30.0 85 0.0019 32.2 5.2 59 57-116 94-153 (284)
206 KOG3625 Alpha amylase [Carbohy 29.8 49 0.0011 40.5 3.6 76 55-139 140-235 (1521)
207 PRK09997 hydroxypyruvate isome 29.7 83 0.0018 32.2 4.9 60 57-116 85-144 (258)
208 PRK15492 triosephosphate isome 29.5 1E+02 0.0023 32.3 5.7 49 63-117 87-135 (260)
209 PF07691 PA14: PA14 domain; I 29.4 2.9E+02 0.0064 25.0 8.2 66 473-546 49-120 (145)
210 PLN02784 alpha-amylase 28.8 1.1E+02 0.0025 37.4 6.4 57 60-116 524-588 (894)
211 PLN02389 biotin synthase 28.6 77 0.0017 35.1 4.7 50 60-112 178-229 (379)
212 COG0366 AmyA Glycosidases [Car 28.6 99 0.0021 34.3 5.7 56 61-116 33-97 (505)
213 cd07944 DRE_TIM_HOA_like 4-hyd 28.3 1.2E+02 0.0025 31.8 5.8 66 52-117 15-81 (266)
214 PF00728 Glyco_hydro_20: Glyco 28.1 1.1E+02 0.0024 32.6 5.8 63 54-116 15-93 (351)
215 PLN03036 glutamine synthetase; 28.1 1.8E+02 0.0039 32.9 7.6 67 57-129 230-308 (432)
216 PF08924 DUF1906: Domain of un 28.0 1.1E+02 0.0023 28.9 5.0 92 55-166 36-128 (136)
217 PRK05265 pyridoxine 5'-phospha 27.8 74 0.0016 33.1 4.1 48 57-122 113-161 (239)
218 cd07944 DRE_TIM_HOA_like 4-hyd 27.8 1E+02 0.0022 32.2 5.3 58 43-116 72-129 (266)
219 PRK14567 triosephosphate isome 27.4 1.2E+02 0.0026 31.9 5.6 48 64-117 79-126 (253)
220 cd06831 PLPDE_III_ODC_like_AZI 27.4 73 0.0016 35.2 4.3 66 54-131 147-215 (394)
221 PF13380 CoA_binding_2: CoA bi 27.3 1.3E+02 0.0027 27.4 5.2 70 28-113 31-106 (116)
222 TIGR02195 heptsyl_trn_II lipop 27.3 1.3E+02 0.0027 31.9 6.0 80 39-118 173-262 (334)
223 PF04909 Amidohydro_2: Amidohy 27.2 2.2E+02 0.0048 28.4 7.5 65 44-117 73-138 (273)
224 PTZ00333 triosephosphate isome 27.1 1.3E+02 0.0027 31.6 5.7 48 64-117 83-130 (255)
225 TIGR01698 PUNP purine nucleoti 26.6 1E+02 0.0022 32.0 4.9 40 36-75 47-87 (237)
226 PRK14566 triosephosphate isome 26.2 1.3E+02 0.0028 31.7 5.6 49 63-117 88-136 (260)
227 TIGR00542 hxl6Piso_put hexulos 26.0 3.3E+02 0.0071 28.0 8.7 101 55-184 50-154 (279)
228 smart00854 PGA_cap Bacterial c 25.5 6E+02 0.013 25.7 10.3 121 60-214 63-208 (239)
229 COG3684 LacD Tagatose-1,6-bisp 25.3 59 0.0013 34.3 2.9 51 63-116 117-167 (306)
230 PRK07094 biotin synthase; Prov 25.2 66 0.0014 34.2 3.4 50 60-112 129-181 (323)
231 PF07908 D-aminoacyl_C: D-amin 25.1 52 0.0011 25.5 1.9 12 503-514 20-31 (48)
232 cd06570 GH20_chitobiase-like_1 25.0 2.1E+02 0.0045 30.8 7.1 60 54-116 15-88 (311)
233 PTZ00372 endonuclease 4-like p 24.9 4.2E+02 0.0091 29.8 9.6 115 37-183 153-275 (413)
234 PF14958 DUF4506: Domain of un 24.9 2.3E+02 0.005 27.0 6.5 53 493-545 29-91 (138)
235 KOG0805 Carbon-nitrogen hydrol 24.8 2.6E+02 0.0056 29.5 7.2 75 97-185 38-123 (337)
236 PF08533 Glyco_hydro_42C: Beta 24.7 67 0.0015 25.4 2.5 34 371-405 11-56 (58)
237 PRK14565 triosephosphate isome 24.7 1.4E+02 0.003 31.0 5.5 49 63-117 78-126 (237)
238 TIGR03128 RuMP_HxlA 3-hexulose 24.6 1.6E+02 0.0034 29.0 5.7 52 47-115 57-108 (206)
239 PF10566 Glyco_hydro_97: Glyco 24.5 2.1E+02 0.0046 30.3 6.9 62 54-116 29-93 (273)
240 PRK12330 oxaloacetate decarbox 24.4 1.7E+02 0.0038 33.6 6.7 53 51-115 91-143 (499)
241 PF03170 BcsB: Bacterial cellu 24.4 1E+02 0.0022 36.0 5.0 41 503-543 64-107 (605)
242 PLN02429 triosephosphate isome 24.2 1.4E+02 0.003 32.4 5.5 49 63-117 140-188 (315)
243 PRK12595 bifunctional 3-deoxy- 24.2 3.9E+02 0.0084 29.5 9.1 83 26-116 105-189 (360)
244 TIGR02201 heptsyl_trn_III lipo 24.1 1.4E+02 0.0031 31.7 5.7 65 51-118 194-271 (344)
245 PRK09739 hypothetical protein; 24.1 1.9E+02 0.0042 28.4 6.2 76 40-116 4-88 (199)
246 TIGR03234 OH-pyruv-isom hydrox 24.0 1.1E+02 0.0025 30.9 4.8 60 57-116 84-143 (254)
247 PRK08195 4-hyroxy-2-oxovalerat 24.0 1.5E+02 0.0033 32.2 5.8 44 61-116 92-135 (337)
248 PLN02561 triosephosphate isome 23.7 1.5E+02 0.0032 31.2 5.5 49 63-117 81-129 (253)
249 KOG3833 Uncharacterized conser 23.6 88 0.0019 34.0 3.8 53 58-116 444-499 (505)
250 TIGR02427 protocat_pcaD 3-oxoa 23.6 1.9E+02 0.0042 27.4 6.1 82 39-132 12-94 (251)
251 TIGR01108 oadA oxaloacetate de 23.5 1.9E+02 0.0041 33.9 6.9 53 51-115 85-137 (582)
252 PF10435 BetaGal_dom2: Beta-ga 23.3 3E+02 0.0064 27.4 7.3 44 356-399 13-65 (183)
253 cd04886 ACT_ThrD-II-like C-ter 23.2 3.5E+02 0.0076 20.8 6.8 59 55-113 8-72 (73)
254 PF11261 IRF-2BP1_2: Interfero 23.1 44 0.00096 26.6 1.1 30 79-108 19-49 (54)
255 cd06525 GH25_Lyc-like Lyc mura 23.1 69 0.0015 31.3 2.8 42 96-137 103-148 (184)
256 cd04883 ACT_AcuB C-terminal AC 22.9 2.7E+02 0.006 22.0 6.0 56 56-113 12-69 (72)
257 COG0149 TpiA Triosephosphate i 22.7 1.6E+02 0.0035 30.9 5.5 49 63-117 81-129 (251)
258 TIGR03217 4OH_2_O_val_ald 4-hy 22.6 1.6E+02 0.0035 31.9 5.8 44 61-116 91-134 (333)
259 cd00958 DhnA Class I fructose- 22.4 89 0.0019 31.6 3.6 62 49-116 68-129 (235)
260 TIGR03551 F420_cofH 7,8-dideme 22.3 72 0.0016 34.4 3.0 51 60-113 141-196 (343)
261 smart00606 CBD_IV Cellulose Bi 22.3 5.7E+02 0.012 22.9 9.4 52 492-544 56-116 (129)
262 PRK13396 3-deoxy-7-phosphohept 22.2 5.7E+02 0.012 28.2 9.8 75 34-116 93-172 (352)
263 cd03334 Fab1_TCP TCP-1 like do 22.1 3.5E+02 0.0076 28.2 8.0 61 40-117 87-160 (261)
264 cd02874 GH18_CFLE_spore_hydrol 22.0 3.3E+02 0.0073 28.7 8.0 112 67-210 22-133 (313)
265 cd08181 PPD-like 1,3-propanedi 22.0 1.7E+02 0.0037 31.8 5.8 67 39-117 25-91 (357)
266 PRK09282 pyruvate carboxylase 21.8 2E+02 0.0043 33.9 6.6 55 49-115 88-142 (592)
267 PF00282 Pyridoxal_deC: Pyrido 21.8 1.7E+02 0.0036 32.2 5.8 71 38-115 139-230 (373)
268 PRK10569 NAD(P)H-dependent FMN 21.6 1.9E+02 0.0041 28.7 5.6 72 41-116 2-75 (191)
269 cd06569 GH20_Sm-chitobiase-lik 21.4 2.6E+02 0.0056 31.7 7.3 73 31-116 6-117 (445)
270 PRK14582 pgaB outer membrane N 21.4 3.3E+02 0.0071 32.7 8.3 62 53-114 68-137 (671)
271 PF02829 3H: 3H domain; Inter 21.2 1.4E+02 0.0029 26.9 4.0 58 54-111 5-62 (98)
272 TIGR02193 heptsyl_trn_I lipopo 21.1 2.2E+02 0.0048 29.8 6.4 75 40-118 180-265 (319)
273 cd08185 Fe-ADH1 Iron-containin 21.1 2.1E+02 0.0046 31.3 6.4 67 39-117 25-91 (380)
274 PF00121 TIM: Triosephosphate 21.1 66 0.0014 33.4 2.3 49 63-117 77-125 (244)
275 PF01487 DHquinase_I: Type I 3 21.0 2.5E+02 0.0055 28.1 6.5 65 45-118 116-184 (224)
276 KOG1411 Aspartate aminotransfe 20.7 5.4E+02 0.012 28.6 9.0 137 40-206 198-338 (427)
277 COG0156 BioF 7-keto-8-aminopel 20.7 71 0.0015 35.5 2.6 68 36-115 136-207 (388)
278 PF00120 Gln-synt_C: Glutamine 20.6 1.8E+02 0.0039 30.1 5.4 61 55-120 67-139 (259)
279 PRK00870 haloalkane dehalogena 20.3 2.1E+02 0.0046 29.4 6.0 66 39-110 46-114 (302)
280 cd07943 DRE_TIM_HOA 4-hydroxy- 20.2 1.8E+02 0.0039 30.1 5.3 44 61-116 89-132 (263)
281 cd08171 GlyDH-like2 Glycerol d 20.1 1.8E+02 0.0039 31.4 5.5 65 39-117 22-86 (345)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=3.9e-176 Score=1488.12 Aligned_cols=619 Identities=66% Similarity=1.205 Sum_probs=585.0
Q ss_pred hhhHHHHHHHHHHHHhhhcccceeEEEecCcEEECCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCcc
Q 006904 4 LFVYRMLIVFCLSLCLCCHHIHCSVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVH 83 (626)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~idG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~h 83 (626)
|.|..+|.+++|+...|.+....+|+||+++|+|||+|++|+||+|||||+||++|+|+|+||||+|+|+|+||||||+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~H 85 (840)
T PLN03059 6 LVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH 85 (840)
T ss_pred eehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 33333333334444457777788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHH
Q 006904 84 EPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLM 163 (626)
Q Consensus 84 Ep~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l 163 (626)
||+||+|||+|++||++||++|+|+||||||||||||||||++||+|.||+++|+|++||+||+|+++|++|+++|+++|
T Consensus 86 Ep~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l 165 (840)
T PLN03059 86 EPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMM 165 (840)
T ss_pred CCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCCCCCCccccCCCCcccCcCCCC
Q 006904 164 KSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEEDAPDPVINSCNGFYCDAFTPN 243 (626)
Q Consensus 164 ~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~~~ng~~~~~~~~~ 243 (626)
++++|++++||||||+|||||||++.+.++.++++||+||++|++++|++|||+||++.+++++++++|||.+|+.|.++
T Consensus 166 ~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~ 245 (840)
T PLN03059 166 KSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPN 245 (840)
T ss_pred hhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccC
Confidence 99999999999999999999999988788889999999999999999999999999998889999999999999999988
Q ss_pred CCCCCeEEeeecCccccccCCCCCCCCHHHHHHHHHHHHHhCCeeeeeeEeecCCCCCCCCCCCcccccccCCCCCCCCC
Q 006904 244 QPYKPTIWTEAWSGWFTEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYG 323 (626)
Q Consensus 244 ~p~~P~~~tE~~~Gwf~~wG~~~~~r~~~d~~~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G 323 (626)
++.+|+||+|||+|||++||+++++|+++|+++.++++|++|+|++||||||||||||+++|+++++|||||||||||+|
T Consensus 246 ~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G 325 (840)
T PLN03059 246 KDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYG 325 (840)
T ss_pred CCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCcccccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHhhhccccCCCccccCCCceeeEEeecCCCceEEEEEeCCCCceEEEEECCeEEeeCCceEE
Q 006904 324 LIRQPKYGHLKELHRAIKMCERALVSADPIVTSLGGFQQAHVYSSESGDCAAFLSNYDTKSAARVLFNNMHYNLPPWSIS 403 (626)
Q Consensus 324 ~~~~pky~~lk~lh~~l~~~~~~L~~~~~~~~~lg~~~e~~~y~~~~~~~~~Fl~N~~~~~~~~V~f~~~~y~lp~~svs 403 (626)
++++|||.+||++|+++++|+++|+.++|...+||+++|+++|...+ .|++|+.|++++.+++|+|+|++|.|||||||
T Consensus 326 ~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svs 404 (840)
T PLN03059 326 LPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVS 404 (840)
T ss_pred CcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCcccee
Confidence 99889999999999999999999999999999999999999999766 79999999999999999999999999999999
Q ss_pred EccCCCeeeeeeeeeccccceeeeecCcccccceeeeeec-cCCCCCCCceecccchhhhcccCCCcceEEEEEEEEeCC
Q 006904 404 VLPDCRNVVFNTAKVGVQTSQMEMLPANAEMFSWESYFED-ISSLDDSSTFTTQGLLEQINVTRDASDYLWYITSVDIGS 482 (626)
Q Consensus 404 Ilpd~~~v~~nTa~v~~~~~~~~~~~~~~~~~~w~~~~e~-i~~~~~~~~~~~~~~lEq~~~T~D~sDYlWY~T~v~~~~ 482 (626)
|||||++++|||++|++|++.++..+.. ..++|++++|+ ++.+ .+..++.++|+||+|+|+|+||||||+|+|+++.
T Consensus 405 ilpd~~~~lfnta~v~~q~~~~~~~~~~-~~~~w~~~~e~~~~~~-~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~ 482 (840)
T PLN03059 405 ILPDCKTAVFNTARLGAQSSQMKMNPVG-STFSWQSYNEETASAY-TDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDP 482 (840)
T ss_pred ecccccceeeeccccccccceeeccccc-ccccceeecccccccc-cCCCcchhhHHHhhcccCCCCceEEEEEEEeecC
Confidence 9999999999999999998887665442 45699999999 4555 5677899999999999999999999999999988
Q ss_pred CCccccCCCccEEEEeecCcEEEEEECCeEEEEEEcCCCcceEEEEeeeeecCccceEEEEEeeccCCCccccceeecce
Q 006904 483 SESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVGLPNVGGHYETWNTG 562 (626)
Q Consensus 483 ~d~~~~~~~~~~L~v~s~gh~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v~L~~G~N~islLS~tvGL~n~Ga~~E~~~aG 562 (626)
++.+.|++.+|+|+|.+.+|++||||||+++|++++++.+..|+|+++|+|+.|.|+|+|||++||++|||+|||++.+|
T Consensus 483 ~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kG 562 (840)
T PLN03059 483 DEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAG 562 (840)
T ss_pred CccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCccccccccc
Confidence 88666888999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred eeeeEEEeccCCcceecCCCcceeeeeeeeeccccccCCCCCcceeeecccccCCCCCceeeeC
Q 006904 563 ILGPVALHGLDQGKWDLSWQKWTYQVGLRGEAMNLVSPNGISSVEWMQASLAVQRQQPLMWHKV 626 (626)
Q Consensus 563 i~g~V~l~g~~~g~~DLs~~~W~ykvGL~GE~~~iy~~~~~~~v~W~~~~~~~~~~~pltWYKt 626 (626)
|+|+|+|.|+++|++|||+++|+||+||+||+++||+++++.+++|++.+..++ ++|+||||+
T Consensus 563 I~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~-~~p~twYK~ 625 (840)
T PLN03059 563 VLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQ-KQPLTWYKT 625 (840)
T ss_pred ccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccC-CCCceEEEE
Confidence 999999999999999999999999999999999999998889999988877677 889999996
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-154 Score=1265.44 Aligned_cols=545 Identities=63% Similarity=1.148 Sum_probs=525.3
Q ss_pred ceeEEEecCcEEECCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHH
Q 006904 25 HCSVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKT 104 (626)
Q Consensus 25 ~~~v~~d~~~~~idG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~l 104 (626)
.+.|+||+++|+|||+|++++||+|||||++|+||+|+|+|||++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc
Q 006904 105 IQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENE 184 (626)
Q Consensus 105 a~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENE 184 (626)
|+++||||+||+||||||||++||+|.||+.+|+|.+||+|++|+++|++|+++|+++|| +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCCCCCCccccCCCCccc-CcCC-CCCCCCCeEEeeecCcccccc
Q 006904 185 YGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEEDAPDPVINSCNGFYC-DAFT-PNQPYKPTIWTEAWSGWFTEF 262 (626)
Q Consensus 185 yg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~~~ng~~~-~~~~-~~~p~~P~~~tE~~~Gwf~~w 262 (626)
||.+...|++.+++|++|.+.|+..++.+|||+||+|.|+|+++|++|||++| +.|. |++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999 9998 999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCeeeeeeEeecCCCCCCCCCCCcccccccCCCCCCCCCCCCchhhHHHHHHHHHHHH
Q 006904 263 GGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKM 342 (626)
Q Consensus 263 G~~~~~r~~~d~~~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lk~lh~~l~~ 342 (626)
|++.+.|++||+++.+++|+++|++++||||||||||||++|| ++++|||||||||| |..|+|||+|+|.+|..++.
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999997 99999999999999 99999999999999999999
Q ss_pred hhhccccCCCccccCCCceeeEEeecCCCceEEEEEeCCCCceEEEEECCeEEeeCCceEEEccCCCeeeeeeeeecccc
Q 006904 343 CERALVSADPIVTSLGGFQQAHVYSSESGDCAAFLSNYDTKSAARVLFNNMHYNLPPWSISVLPDCRNVVFNTAKVGVQT 422 (626)
Q Consensus 343 ~~~~L~~~~~~~~~lg~~~e~~~y~~~~~~~~~Fl~N~~~~~~~~V~f~~~~y~lp~~svsIlpd~~~v~~nTa~v~~~~ 422 (626)
|++.|..++++..++|+.+++ |++|+.|++...+..|.|++..|.+|+|||+|+|||++++||||++.+|
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~~---------C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLREA---------CAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ- 401 (649)
T ss_pred cCccccccCcccccccchhhH---------HHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc-
Confidence 999999999888888877654 9999999999999999999999999999999999999999999998655
Q ss_pred ceeeeecCcccccceeeeeeccCCCCCCCceecccchhhhcccCCCcceEEEEEEEEeCCCCccccCCCccEEEEeecCc
Q 006904 423 SQMEMLPANAEMFSWESYFEDISSLDDSSTFTTQGLLEQINVTRDASDYLWYITSVDIGSSESFLHGGELPTLIVQSTGH 502 (626)
Q Consensus 423 ~~~~~~~~~~~~~~w~~~~e~i~~~~~~~~~~~~~~lEq~~~T~D~sDYlWY~T~v~~~~~d~~~~~~~~~~L~v~s~gh 502 (626)
|+.+.||++......++. .+|||+++|+|+|| +|++++. | |.||
T Consensus 402 --------------~~~~~e~~~~~~~~~~~~--~ll~~~~~t~d~sd----~t~~~i~-------------l---s~g~ 445 (649)
T KOG0496|consen 402 --------------WISFTEPIPSEAVGQSFG--GLLEQTNLTKDKSD----TTSLKIP-------------L---SLGH 445 (649)
T ss_pred --------------cccccCCCccccccCcce--EEEEEEeeccccCC----CceEeec-------------c---cccc
Confidence 889999988654555565 89999999999999 8888763 2 9999
Q ss_pred EEEEEECCeEEEEEEcCCCcceEEEEeeeeecCccceEEEEEeeccCCCccccceeecceeeeeEEEeccCCcceecCCC
Q 006904 503 ALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVGLPNVGGHYETWNTGILGPVALHGLDQGKWDLSWQ 582 (626)
Q Consensus 503 ~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v~L~~G~N~islLS~tvGL~n~Ga~~E~~~aGi~g~V~l~g~~~g~~DLs~~ 582 (626)
++||||||+|+|+.+|+.++..++|++++.|++|.|+|+|||++||++||| |||++.+||+|||.|.|+ +||+++
T Consensus 446 ~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~ 520 (649)
T KOG0496|consen 446 ALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWT 520 (649)
T ss_pred eEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ecccee
Confidence 999999999999999999999999999999999999999999999999999 999999999999999886 899999
Q ss_pred cceeeeeeeeeccccccCCCCCcceeeecccccCCCCCceeeeC
Q 006904 583 KWTYQVGLRGEAMNLVSPNGISSVEWMQASLAVQRQQPLMWHKV 626 (626)
Q Consensus 583 ~W~ykvGL~GE~~~iy~~~~~~~v~W~~~~~~~~~~~pltWYKt 626 (626)
+|+||+||+||++.+|+++++++|+|.+....++ +||+||||+
T Consensus 521 ~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~-k~P~~w~k~ 563 (649)
T KOG0496|consen 521 KWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTAT-KQPLTWYKT 563 (649)
T ss_pred ecceecccccchhhccccccccccceeeccCccc-CCCeEEEEE
Confidence 9999999999999999999999999999988777 799999994
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=8.2e-90 Score=725.88 Aligned_cols=297 Identities=43% Similarity=0.832 Sum_probs=233.7
Q ss_pred cEEECCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEE
Q 006904 34 ALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (626)
Q Consensus 34 ~~~idG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 113 (626)
+|+|||||++++|||+||+|+||++|+|+|+||||+|+|||+|||+||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccC
Q 006904 114 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLG 193 (626)
Q Consensus 114 lr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~ 193 (626)
|||||||||||++||+|.||..++++++||+||+|+++|++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 7889999999999999999942
Q ss_pred cccHHHHHHHHHHHHHcCCC-cceeecCC--------CCCCCccccCCCCcccCcC--------CCCCCCCCeEEeeecC
Q 006904 194 AAGHNYMTWAAKMAVEMGTG-VPWVMCKE--------EDAPDPVINSCNGFYCDAF--------TPNQPYKPTIWTEAWS 256 (626)
Q Consensus 194 ~~~~~Y~~~l~~~~~~~g~~-vP~~~~~~--------~~~p~~vi~~~ng~~~~~~--------~~~~p~~P~~~tE~~~ 256 (626)
.++++||+.|++++++.+++ ++.++|+. .++|+..+.+|+++.|... ...+|++|.+++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 47899999999999999987 65666653 1345555666777777432 2456889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhCCeeeeeeEeecCCCCCCCCCCCcc----cccccCCCCCCCCCCCCchhhHH
Q 006904 257 GWFTEFGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFI----TTSYDYDAPIDEYGLIRQPKYGH 332 (626)
Q Consensus 257 Gwf~~wG~~~~~r~~~d~~~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~----~tSYDy~Apl~E~G~~~~pky~~ 332 (626)
|||++||++.+.+++++++..+++++++| +++||||||||||||+++|+... +|||||+|||+|+|+++ |||++
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g-~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~~-~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKG-NSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQLT-PKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHC-SEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhh-cccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCcC-HHHHH
Confidence 99999999999999999999999999999 66899999999999999876544 49999999999999996 99999
Q ss_pred HHHHHHH
Q 006904 333 LKELHRA 339 (626)
Q Consensus 333 lk~lh~~ 339 (626)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999975
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=325.09 Aligned_cols=293 Identities=23% Similarity=0.361 Sum_probs=201.4
Q ss_pred EEEecCcEEECCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEe-ceecCccCCCCceeeecccchHHHHHHHHH
Q 006904 28 VTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ 106 (626)
Q Consensus 28 v~~d~~~~~idG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~t-yv~Wn~hEp~~G~ydF~G~~dL~~fl~la~ 106 (626)
|++++..+++||+|++++||++||+|+|++.|.|+|++||++|+|+|++ |+.|+.|||++|+|||+ .+|++ |+++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4678999999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCcEEEEeeCc-eeeeecCCCCCCccccccCCeeee---------cCChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 006904 107 KAGLYAHLRIGP-YVCAEWNFGGFPVWLKYVPGISFR---------TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPI 176 (626)
Q Consensus 107 ~~GL~Vilr~GP-yi~aEw~~GG~P~WL~~~p~i~~R---------t~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpI 176 (626)
+.||+||||||| ..|.+|..++.|.||...+.-..| .++|.|++++++.+.+|.+++ ++++|+|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999865542222 346678888888555555543 3789999
Q ss_pred EeecccccccccccccCcccHHHHHHHHHHHHHc-CCCcceeecC-CCCCCC-ccccCCC-----Cccc--CcCCCCCCC
Q 006904 177 ILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEM-GTGVPWVMCK-EEDAPD-PVINSCN-----GFYC--DAFTPNQPY 246 (626)
Q Consensus 177 I~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~-g~~vP~~~~~-~~~~p~-~vi~~~n-----g~~~--~~~~~~~p~ 246 (626)
|+||++||||+..+.+..|.+.+..||++.+-.+ ...-+|=+.- ..+..+ ..|.+.+ +..- -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999976667778889999999887321 2222321111 000000 0010101 0000 001100011
Q ss_pred C----CeEEeeecCccc-cccCCCCCCCC-HHHHHHHHHHHHHhCCeeeeeeEeecCCCCC------CCCCC---Cc---
Q 006904 247 K----PTIWTEAWSGWF-TEFGGPIHQRP-VQDLAFAAARFIQKGGSFINYYMYHGGTNFG------RSAGG---PF--- 308 (626)
Q Consensus 247 ~----P~~~tE~~~Gwf-~~wG~~~~~r~-~~d~~~~~~~~~~~g~s~~nyYM~hGGTNfG------~~~G~---~~--- 308 (626)
+ +....|.+-+|| ..|..+.-... .+--++.+++.+..... -||||+|+|++|+ +.+|+ ++
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 1 222233344444 22222211111 11123344444444444 7999999999999 44443 22
Q ss_pred ----ccccccCCCCCCCCCCCCchh
Q 006904 309 ----ITTSYDYDAPIDEYGLIRQPK 329 (626)
Q Consensus 309 ----~~tSYDy~Apl~E~G~~~~pk 329 (626)
..+++++.+.+.+.|..|-|+
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~l~s 336 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALRLPS 336 (673)
T ss_pred cCCcchhhhhhccCCCCCccccccc
Confidence 478999999999999965443
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.84 E-value=2.3e-20 Score=201.45 Aligned_cols=265 Identities=21% Similarity=0.305 Sum_probs=159.5
Q ss_pred eeCCCCChhhHHHHHHHHHHCCCCEEEe-ceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCC
Q 006904 49 IHYPRSTPDMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG 127 (626)
Q Consensus 49 iHy~R~~~~~W~d~l~k~K~~GlN~V~t-yv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G 127 (626)
+++..++++.|+++|++||++|+|+|++ .+.|...||+||+|||+ .|+++|++|+++||+|||++. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4566789999999999999999999996 67899999999999999 899999999999999999985 46
Q ss_pred CCCccccc-cCCeee----------------ecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccccccc
Q 006904 128 GFPVWLKY-VPGISF----------------RTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSK 190 (626)
Q Consensus 128 G~P~WL~~-~p~i~~----------------Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~ 190 (626)
..|.||.+ .|++.. ..++|.|++++++++++++++++++ ..||++||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCcC
Confidence 79999975 677532 1347899999999999999999854 47999999999987532
Q ss_pred ccCcccHHHHHHHHHHHHHc-------CC-------------CcceeecCCC----------------------------
Q 006904 191 LLGAAGHNYMTWAAKMAVEM-------GT-------------GVPWVMCKEE---------------------------- 222 (626)
Q Consensus 191 ~~~~~~~~Y~~~l~~~~~~~-------g~-------------~vP~~~~~~~---------------------------- 222 (626)
....+.++|.+||++.+... |+ .+|--+....
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22235667777777776421 11 1122211000
Q ss_pred -CCCCccccC------CCCc-------ccC-----c------------C----------CCCCCCCCeEEeeecCccccc
Q 006904 223 -DAPDPVINS------CNGF-------YCD-----A------------F----------TPNQPYKPTIWTEAWSGWFTE 261 (626)
Q Consensus 223 -~~p~~vi~~------~ng~-------~~~-----~------------~----------~~~~p~~P~~~tE~~~Gwf~~ 261 (626)
..|+..+-+ ..+. .+| . . ....+.+|.+.+|..+| -..
T Consensus 224 ~~~p~~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~~ 302 (374)
T PF02449_consen 224 EYDPDHPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PVN 302 (374)
T ss_dssp HHSTT-EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---S
T ss_pred HhCCCceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CCC
Confidence 001110000 0000 000 0 0 01147899999999998 556
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCeeeeeeEeecCCCCCCCCCCCcccccccCCCCCCCCCCCCchhhHHHHHHHHHHH
Q 006904 262 FGGPIHQRPVQDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIK 341 (626)
Q Consensus 262 wG~~~~~r~~~d~~~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lk~lh~~l~ 341 (626)
|+.......+..+....-..++.|+..+.|+-+ ..-.+|.-. + ..+-|+-+|...+++|.+++++.+-|+
T Consensus 303 ~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~---~------~~g~~~~dg~~~~~~~~e~~~~~~~l~ 372 (374)
T PF02449_consen 303 WRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQ---F------HGGLVDHDGREPTRRYREVAQLGRELK 372 (374)
T ss_dssp SSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTT---T------S--SB-TTS--B-HHHHHHHHHHHHHH
T ss_pred CccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchh---h------hcccCCccCCCCCcHHHHHHHHHHHHh
Confidence 765555555566766666788999999988876 222333211 0 135678889444789999999998887
Q ss_pred H
Q 006904 342 M 342 (626)
Q Consensus 342 ~ 342 (626)
.
T Consensus 373 ~ 373 (374)
T PF02449_consen 373 K 373 (374)
T ss_dssp T
T ss_pred c
Confidence 4
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.27 E-value=2.5e-10 Score=119.71 Aligned_cols=191 Identities=19% Similarity=0.294 Sum_probs=125.9
Q ss_pred EEEecCcEEECCEEeEEEEEEeeCCC------CChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHH
Q 006904 28 VTYDRKALLINGQRRILFSGSIHYPR------STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRF 101 (626)
Q Consensus 28 v~~d~~~~~idG~~~~l~sG~iHy~R------~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~f 101 (626)
|.+.++.|.|||||++|-+...|... .+++.+..+|++||++|+|+||+ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 67889999999999999999999632 48899999999999999999999 45553 1789
Q ss_pred HHHHHHcCcEEEEeeCce-eeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006904 102 IKTIQKAGLYAHLRIGPY-VCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (626)
Q Consensus 102 l~la~~~GL~Vilr~GPy-i~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 180 (626)
+++|.++||.|+.-+ |. -++.|..-|. ......+|.+.+.+.+-+++++.+.+.|| .||+|=
T Consensus 65 ~~~cD~~GilV~~e~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~ 127 (298)
T PF02836_consen 65 YDLCDELGILVWQEI-PLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWS 127 (298)
T ss_dssp HHHHHHHT-EEEEE--S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEE
T ss_pred HHHHhhcCCEEEEec-cccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheee
Confidence 999999999999775 22 1122221111 12445789999999888888888888665 899999
Q ss_pred ccccccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCC--CCCCccc-cCCCCccc-----CcCC----C--CCCC
Q 006904 181 IENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEE--DAPDPVI-NSCNGFYC-----DAFT----P--NQPY 246 (626)
Q Consensus 181 IENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~--~~p~~vi-~~~ng~~~-----~~~~----~--~~p~ 246 (626)
+-||-. ...+++.|.+++++..-.-|....... ...+.++ +...+.+- +.+. . ..++
T Consensus 128 ~gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 198 (298)
T PF02836_consen 128 LGNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPD 198 (298)
T ss_dssp EEESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCT
T ss_pred cCccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCC
Confidence 999992 457788899999998888786654441 1111111 11111110 0111 1 3588
Q ss_pred CCeEEeeecCcccc
Q 006904 247 KPTIWTEAWSGWFT 260 (626)
Q Consensus 247 ~P~~~tE~~~Gwf~ 260 (626)
+|.+.+|+....+.
T Consensus 199 kP~i~sEyg~~~~~ 212 (298)
T PF02836_consen 199 KPIIISEYGADAYN 212 (298)
T ss_dssp S-EEEEEESEBBSS
T ss_pred CCeEehhccccccc
Confidence 99999999765544
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.07 E-value=2.4e-08 Score=114.76 Aligned_cols=160 Identities=15% Similarity=0.089 Sum_probs=115.0
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCC------CChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHH
Q 006904 26 CSVTYDRKALLINGQRRILFSGSIHYPR------STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLV 99 (626)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~iHy~R------~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~ 99 (626)
.+|+++++.|+|||+|+++-+.+.|... .+++.|..+|+.||++|+|+||+ .|-|. + .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~------~-----~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY------S-----E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC------C-----H
Confidence 6689999999999999999999998432 57888999999999999999999 35442 1 6
Q ss_pred HHHHHHHHcCcEEEEeeCceeeeecCCCCCCcccc--------ccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccc
Q 006904 100 RFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK--------YVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFES 171 (626)
Q Consensus 100 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~--------~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~ 171 (626)
+|+++|.++||+|+-.+. . -|+..|.. ..+.......+|.+.+...+-+++++.+.+.|
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NH----- 406 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKNH----- 406 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-------ccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhccCC-----
Confidence 899999999999997752 1 11222221 11111112345677777777677777766655
Q ss_pred cCCceEeecccccccccccccCcccHHHHHHHHHHHHHcCCCcceeecC
Q 006904 172 QGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCK 220 (626)
Q Consensus 172 ~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 220 (626)
..||+|-|-||.... ......+++.+.+.+++++-.-|...+.
T Consensus 407 --PSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~ 449 (604)
T PRK10150 407 --PSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVN 449 (604)
T ss_pred --ceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 489999999997531 1234577788888899888877766543
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.92 E-value=1.6e-08 Score=103.37 Aligned_cols=160 Identities=18% Similarity=0.244 Sum_probs=109.8
Q ss_pred CCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccC-CCCce-eeecccchHHHHHHHHHHcCcEEEEe
Q 006904 38 NGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHE-PSPGN-YNFEGRYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 38 dG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hE-p~~G~-ydF~G~~dL~~fl~la~~~GL~Vilr 115 (626)
+|+++.+.+-+.|+.. +..-++.++.||++|+|+||+.+.|...+ |.|+. ++=+.-..|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6999999999999322 22678899999999999999999995554 67764 66666679999999999999999987
Q ss_pred eCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccc--cC
Q 006904 116 IGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKL--LG 193 (626)
Q Consensus 116 ~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~--~~ 193 (626)
+= + .|.|....... ...+...+...++++.|+++++++ .+|++++|=||....... +.
T Consensus 82 ~h----~------~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~~~-------~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----N------APGWANGGDGY---GNNDTAQAWFKSFWRALAKRYKDN-------PPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----E------STTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHTTT-------TTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----c------Ccccccccccc---ccchhhHHHHHhhhhhhccccCCC-------CcEEEEEecCCccccCCccccc
Confidence 62 1 27774322110 122334455556677777777633 479999999999874221 10
Q ss_pred -cccH---HHHHHHHHHHHHcCCCcceeec
Q 006904 194 -AAGH---NYMTWAAKMAVEMGTGVPWVMC 219 (626)
Q Consensus 194 -~~~~---~Y~~~l~~~~~~~g~~vP~~~~ 219 (626)
.... ++++.+.+..|+.+.+.+++..
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 0123 4455556666777877766653
No 9
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.85 E-value=1.1e-08 Score=92.96 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=62.6
Q ss_pred ccchhhhcccCCCcceEEEEEEEEeCCCCccccCCCccE-EEEe-ecCcEEEEEECCeEEEEEEcCCCcceEEEEeee-e
Q 006904 456 QGLLEQINVTRDASDYLWYITSVDIGSSESFLHGGELPT-LIVQ-STGHALHIFINGQLSGSAFGTREARRFMYTGKV-N 532 (626)
Q Consensus 456 ~~~lEq~~~T~D~sDYlWY~T~v~~~~~d~~~~~~~~~~-L~v~-s~gh~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v-~ 532 (626)
..+++..+.+++.++|+||+++|..+..|. .-. |.+. +.+|.++|||||+++|+.++. ..++.+|..|. .
T Consensus 21 ~~~~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-~g~q~tf~~p~~i 93 (111)
T PF13364_consen 21 TGPVLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPG-IGPQTTFSVPAGI 93 (111)
T ss_dssp SSSSTCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETT-TECCEEEEE-BTT
T ss_pred CCceeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCC-CCccEEEEeCcee
Confidence 345788899999999999999997543331 122 3443 679999999999999999943 22335565555 3
Q ss_pred ecCccceEEEEEeeccC
Q 006904 533 LRAGRNKIALLSVAVGL 549 (626)
Q Consensus 533 L~~G~N~islLS~tvGL 549 (626)
|+.+.|.|++|...+|.
T Consensus 94 l~~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 94 LKYGNNVLVVLWDNMGH 110 (111)
T ss_dssp BTTCEEEEEEEEE-STT
T ss_pred ecCCCEEEEEEEeCCCC
Confidence 77777788999999984
No 10
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.79 E-value=1.6e-07 Score=113.73 Aligned_cols=261 Identities=18% Similarity=0.164 Sum_probs=152.6
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCC------CChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHH
Q 006904 26 CSVTYDRKALLINGQRRILFSGSIHYPR------STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLV 99 (626)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~iHy~R------~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~ 99 (626)
.+|.++++.|.|||+|+++-+...|-.. .+++.|+.+|+.||++|+|+||+ .|-|. =.
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DP 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 5678889999999999999999988321 47899999999999999999998 25443 15
Q ss_pred HHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEee
Q 006904 100 RFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILS 179 (626)
Q Consensus 100 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 179 (626)
+|+++|.++||+|+-.. |..|.-|...+ +...-+++|.|.++..+=+++++.+.+.| ..||+|
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~~~~~~~~mV~RdrNH-------PSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKVYVDRIVRHIHAQKNH-------PSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHHHHHHHHHHHHhCCCC-------CEEEEE
Confidence 89999999999999765 33322221100 01112467777655444455555555544 589999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCCCCC--CccccCCCCcc--cCcCCCCCCCCCeEEeeec
Q 006904 180 QIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEEDAP--DPVINSCNGFY--CDAFTPNQPYKPTIWTEAW 255 (626)
Q Consensus 180 QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~~p--~~vi~~~ng~~--~~~~~~~~p~~P~~~tE~~ 255 (626)
=+-||-+. + . .++.+.+.+++++-.-|+. +.+.... ..|+...-+.+ +..+....+++|.+.+|+-
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~-~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLVH-YEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceEE-eCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 99999753 2 2 2356777778877666653 3332111 11221110111 1122233457999999984
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHH--H---------H-----hCCeeeeeeEeecCCCCCCCCCCCcccccccCCCCC
Q 006904 256 SGWFTEFGGPIHQRPVQDLAFAAARF--I---------Q-----KGGSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPI 319 (626)
Q Consensus 256 ~Gwf~~wG~~~~~r~~~d~~~~~~~~--~---------~-----~g~s~~nyYM~hGGTNfG~~~G~~~~~tSYDy~Apl 319 (626)
-+ .|... ...++.-..+.+. + - .+... .-|+.+||. ||.+. - ..++--+.-+
T Consensus 515 ha----mgn~~--g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G-~~~~~ygGd-~g~~p---~-~~~f~~~Glv 582 (1021)
T PRK10340 515 HA----MGNGP--GGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNG-NVWYKYGGD-YGDYP---N-NYNFCIDGLI 582 (1021)
T ss_pred hc----cCCCC--CCHHHHHHHHHhCCceeEEeeeecCcccccccCCCC-CEEEEECCC-CCCCC---C-CcCcccceeE
Confidence 22 12100 0122222211110 0 0 00000 124456663 55321 0 1122334668
Q ss_pred CCCCCCCchhhHHHHHHHHHHHH
Q 006904 320 DEYGLIRQPKYGHLKELHRAIKM 342 (626)
Q Consensus 320 ~E~G~~~~pky~~lk~lh~~l~~ 342 (626)
+.+|.+ .|.+.++|.+.+-++-
T Consensus 583 ~~dr~p-~p~~~e~k~~~~pv~~ 604 (1021)
T PRK10340 583 YPDQTP-GPGLKEYKQVIAPVKI 604 (1021)
T ss_pred CCCCCC-ChhHHHHHHhcceEEE
Confidence 888988 5999999998887763
No 11
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.79 E-value=2e-07 Score=112.87 Aligned_cols=258 Identities=17% Similarity=0.182 Sum_probs=153.9
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeC--C----CCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHH
Q 006904 26 CSVTYDRKALLINGQRRILFSGSIHY--P----RSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLV 99 (626)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~iHy--~----R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~ 99 (626)
.+|+++++.|+|||+|+++-+...|- + +.+++.++++|+.||++|+|+||+ .|-|. =.
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HP 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 56788889999999999999999983 2 368999999999999999999999 35442 16
Q ss_pred HHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEee
Q 006904 100 RFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILS 179 (626)
Q Consensus 100 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 179 (626)
+|.++|.++||+|+-... . | ..|-.|.. . + .++|.|++++..=+++++.+.+.| ..||+|
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e-~hg~~~~~---~----~-~~dp~~~~~~~~~~~~mV~RdrNH-------PSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---E-THGMVPMN---R----L-SDDPRWLPAMSERVTRMVQRDRNH-------PSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---c-ccCCcccc---C----C-CCCHHHHHHHHHHHHHHHHhCCCC-------CEEEEE
Confidence 889999999999997752 1 1 11111210 0 1 357888776655566666666644 589999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHHHcCCCcceeecCCC-CC-CCcccc----CCCCc---------ccCcCCCC-
Q 006904 180 QIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCKEE-DA-PDPVIN----SCNGF---------YCDAFTPN- 243 (626)
Q Consensus 180 QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~-~~-p~~vi~----~~ng~---------~~~~~~~~- 243 (626)
=+-||-+. + ...+.+.+.++++.-.-|.....+. +. ...++. ...+. .++.|...
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~~~~~~~~~~Dv~~~my~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYEGGGADTAATDIICPMYARVDEDQPFPAVPKWSIKKWISLP 528 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEECCCCCCCCccccccCCCCCccccccccccchHHHHHHHhcC
Confidence 99999763 1 1245566777777777776654321 11 111111 11100 01122222
Q ss_pred CCCCCeEEeeecCccccccCCCCCCCCHHHHHHHHHHH--HHh--------------CCeeeeeeEeecCCCCCCCC-CC
Q 006904 244 QPYKPTIWTEAWSGWFTEFGGPIHQRPVQDLAFAAARF--IQK--------------GGSFINYYMYHGGTNFGRSA-GG 306 (626)
Q Consensus 244 ~p~~P~~~tE~~~Gwf~~wG~~~~~r~~~d~~~~~~~~--~~~--------------g~s~~nyYM~hGGTNfG~~~-G~ 306 (626)
.+++|.+.+|+- -..|... -..++.-..+.+. ++- .... .-|..+||- ||-.. -+
T Consensus 529 ~~~kP~i~cEY~----Hamgn~~--g~l~~yw~~~~~~~~~~GgfIW~w~Dqg~~~~~~~G-~~~~~YGGD-fgd~p~d~ 600 (1027)
T PRK09525 529 GETRPLILCEYA----HAMGNSL--GGFAKYWQAFRQYPRLQGGFIWDWVDQGLTKYDENG-NPWWAYGGD-FGDTPNDR 600 (1027)
T ss_pred CCCCCEEEEech----hcccCcC--ccHHHHHHHHhcCCCeeEEeeEeccCcceeeECCCC-CEEEEECCc-CCCCCCCC
Confidence 357999999983 1122110 0123322211110 100 0000 245567773 55331 11
Q ss_pred CcccccccCCCCCCCCCCCCchhhHHHHHHHHHHHH
Q 006904 307 PFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKM 342 (626)
Q Consensus 307 ~~~~tSYDy~Apl~E~G~~~~pky~~lk~lh~~l~~ 342 (626)
.|. -+.-|..++.+ +|++.++|.+++-|+.
T Consensus 601 nFc-----~dGlv~~dR~p-~p~~~E~K~v~qpv~~ 630 (1027)
T PRK09525 601 QFC-----MNGLVFPDRTP-HPALYEAKHAQQFFQF 630 (1027)
T ss_pred Cce-----eceeECCCCCC-CccHHHHHhhcCcEEE
Confidence 221 23446678888 5999999988887763
No 12
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=5.4e-07 Score=106.01 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=98.5
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCC-----C-ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHH
Q 006904 26 CSVTYDRKALLINGQRRILFSGSIHYPR-----S-TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLV 99 (626)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~iHy~R-----~-~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~ 99 (626)
..|++++..|.|||||+++-+..-|.+- . .++.-+++|++||++|+|+|||- |=|. =.
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~-----------~~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPN-----------SE 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCC-----------CH
Confidence 6789999999999999999999999533 3 45558899999999999999994 6554 27
Q ss_pred HHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEee
Q 006904 100 RFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILS 179 (626)
Q Consensus 100 ~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 179 (626)
.|++||.+.||+|+--+ | .||.. .| ++|.|++.+..=+++++++.|.|| .||||
T Consensus 348 ~~ydLcDelGllV~~Ea-~---~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knHP-------SIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA-M---IETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNHP-------SIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec-c---hhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCCC-------cEEEE
Confidence 89999999999999885 2 23322 22 788899999888888888888665 89999
Q ss_pred cccccccc
Q 006904 180 QIENEYGA 187 (626)
Q Consensus 180 QIENEyg~ 187 (626)
=+-||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999875
No 13
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.38 E-value=3e-06 Score=81.07 Aligned_cols=104 Identities=24% Similarity=0.263 Sum_probs=77.6
Q ss_pred hhcccCCCcceEEEEEEEEeCCCCccccCCCccEEEEeecCcEEEEEECCeEEEEEEcCCCcceEEEEeeeeecCcc-ce
Q 006904 461 QINVTRDASDYLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGR-NK 539 (626)
Q Consensus 461 q~~~T~D~sDYlWY~T~v~~~~~d~~~~~~~~~~L~v~s~gh~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v~L~~G~-N~ 539 (626)
........+.+.||+++|++..+. ++....|++....+...|||||+++|+..+.. ..|.++.+--|+.|. |.
T Consensus 59 ~~~~~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~ 132 (167)
T PF02837_consen 59 GDPELWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENT 132 (167)
T ss_dssp TGCCTSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEE
T ss_pred ccccccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEE
Confidence 556677789999999999996533 35678899999999999999999999988765 347777777899999 99
Q ss_pred EEEEEeeccCCCc-cccceeecceeeeeEEEe
Q 006904 540 IALLSVAVGLPNV-GGHYETWNTGILGPVALH 570 (626)
Q Consensus 540 islLS~tvGL~n~-Ga~~E~~~aGi~g~V~l~ 570 (626)
|+|......-... ..+.-...+||.++|.|.
T Consensus 133 l~V~v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 133 LAVRVDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EEEEEESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EEEEEeecCCCceeecCcCCccCccccEEEEE
Confidence 9998873222111 112234579999999984
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.28 E-value=2.6e-06 Score=87.75 Aligned_cols=117 Identities=21% Similarity=0.363 Sum_probs=89.6
Q ss_pred cCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHH
Q 006904 80 WNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKI 159 (626)
Q Consensus 80 Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i 159 (626)
|...||+||+|||+ .++++++.|+++||.| |..+.+ |-. ..|.|+...+ .+..++++++|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 8999999999999998 333322 433 6899997533 345677888888888
Q ss_pred HHHHHhcccccccCCceEeeccccccccccc------cc-CcccHHHHHHHHHHHHHcCCCcceeecCC
Q 006904 160 VNLMKSENLFESQGGPIILSQIENEYGAQSK------LL-GAAGHNYMTWAAKMAVEMGTGVPWVMCKE 221 (626)
Q Consensus 160 ~~~l~~~~l~~~~gGpII~~QIENEyg~~~~------~~-~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~ 221 (626)
+.+++ |.|..++|=||.-+... .| ...|.+|+..+-+.|++.+-++.++.++.
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 87776 56899999999654210 11 12456899999999999988888888754
No 15
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.15 E-value=3.2e-05 Score=81.57 Aligned_cols=156 Identities=12% Similarity=0.133 Sum_probs=87.3
Q ss_pred ccceeEEEecCcEE--ECCEEeEEEEEEeeCCC-----------CChhhHHHHHHHHHHCCCCEEEeceecCccCCCCce
Q 006904 23 HIHCSVTYDRKALL--INGQRRILFSGSIHYPR-----------STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGN 89 (626)
Q Consensus 23 ~~~~~v~~d~~~~~--idG~~~~l~sG~iHy~R-----------~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ 89 (626)
+.-..|+..++.|. .+|++|+|-+-.+.+.- ..++.|+.++..||++|+|+||+|
T Consensus 6 ~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY------------ 73 (314)
T PF03198_consen 6 AAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVY------------ 73 (314)
T ss_dssp TTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES------------
T ss_pred ccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEE------------
Confidence 34467899999998 78899888876655422 357889999999999999999997
Q ss_pred eeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCCh--hHHHHHHHHHHHHHHHHHhcc
Q 006904 90 YNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNE--PFKRAMQGFTEKIVNLMKSEN 167 (626)
Q Consensus 90 ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~--~yl~~~~~~~~~i~~~l~~~~ 167 (626)
.-+-..|-++++++.+++||||||..+. |...+..++| .|-...-.-+.++++.+++++
T Consensus 74 -~vdp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~ 134 (314)
T PF03198_consen 74 -SVDPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD 134 (314)
T ss_dssp ----TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-T
T ss_pred -EeCCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccCC
Confidence 3333458899999999999999999753 2223333445 443333333445567777554
Q ss_pred cccccCCceEeecccccccccccccC--cccHHHHHHHHHHHHHcCC-Ccce
Q 006904 168 LFESQGGPIILSQIENEYGAQSKLLG--AAGHNYMTWAAKMAVEMGT-GVPW 216 (626)
Q Consensus 168 l~~~~gGpII~~QIENEyg~~~~~~~--~~~~~Y~~~l~~~~~~~g~-~vP~ 216 (626)
+++++=+-||.-+....-. +.-|+.++-+|+-.++.+. .+|.
T Consensus 135 -------N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 135 -------NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp -------TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred -------ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 8999999999865321111 1234455555665666665 4554
No 16
>PLN00197 beta-amylase; Provisional
Probab=98.14 E-value=8.7e-06 Score=90.69 Aligned_cols=114 Identities=23% Similarity=0.471 Sum_probs=83.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCC-CCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCC-----C
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG-----G 128 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp-~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 128 (626)
.++.-+..|+++|++|++-|.+.|.|.+.|. .|++|||+| ..+++++|+++||++.+-.-=--||- |-| -
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4666788999999999999999999999998 799999996 66679999999999754433344544 222 2
Q ss_pred CCccccc----cCCeeeec------------------------CChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006904 129 FPVWLKY----VPGISFRT------------------------DNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (626)
Q Consensus 129 ~P~WL~~----~p~i~~Rt------------------------~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 180 (626)
+|.|+.+ +|+|.+.. -=+.|.+.|+.|-..+.+.++ +.|.-+|
T Consensus 201 LP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~---------~~I~eI~ 271 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG---------DTIVEIQ 271 (573)
T ss_pred CCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc---------CceeEEE
Confidence 8999975 57775421 113577777766666544443 4688888
Q ss_pred c
Q 006904 181 I 181 (626)
Q Consensus 181 I 181 (626)
|
T Consensus 272 V 272 (573)
T PLN00197 272 V 272 (573)
T ss_pred e
Confidence 8
No 17
>PLN02705 beta-amylase
Probab=98.13 E-value=9.4e-06 Score=91.04 Aligned_cols=115 Identities=20% Similarity=0.322 Sum_probs=85.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCC-CCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCC-----C
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG-----G 128 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp-~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 128 (626)
.++.-+..|+++|++|++.|.+.|.|.+.|. .|++|||+| ..+++++|+++||++.+-.-=--||- +-| -
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG-NVGD~~~IP 341 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG-NASGNVMIS 341 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC-CCCCccccc
Confidence 4566788999999999999999999999998 699999996 66779999999999754433344554 222 2
Q ss_pred CCccccc----cCCeeee------------------------cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006904 129 FPVWLKY----VPGISFR------------------------TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (626)
Q Consensus 129 ~P~WL~~----~p~i~~R------------------------t~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 180 (626)
+|.|+.+ .|+|.+. |--+.|.+.|+.|-..+.+.|. +|.|.-+|
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~ 413 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFV--------EGLITAVE 413 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhcc--------CCceeEEE
Confidence 8999975 5776442 1124577777777666655553 46888888
Q ss_pred c
Q 006904 181 I 181 (626)
Q Consensus 181 I 181 (626)
|
T Consensus 414 V 414 (681)
T PLN02705 414 I 414 (681)
T ss_pred e
Confidence 8
No 18
>PLN02905 beta-amylase
Probab=98.12 E-value=1.1e-05 Score=90.74 Aligned_cols=115 Identities=23% Similarity=0.451 Sum_probs=86.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCC-CCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCC-----C
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG-----G 128 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp-~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 128 (626)
.++.-+..|+++|++|++.|.+.|.|.+.|. .|++|||+| ..+++++|+++||++.+-.-=--||- |-| -
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IP 359 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIP 359 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4455678899999999999999999999998 699999996 66779999999999754443344544 222 3
Q ss_pred CCccccc----cCCeeee------------------------cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006904 129 FPVWLKY----VPGISFR------------------------TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (626)
Q Consensus 129 ~P~WL~~----~p~i~~R------------------------t~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 180 (626)
+|.|+.+ .|+|.+. |--+.|.+.|+.|-..+.+.|. +|.|.-+|
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~ 431 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISMVE 431 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEEEE
Confidence 8999975 5777542 1124688888777777666554 46888888
Q ss_pred c
Q 006904 181 I 181 (626)
Q Consensus 181 I 181 (626)
|
T Consensus 432 V 432 (702)
T PLN02905 432 V 432 (702)
T ss_pred e
Confidence 8
No 19
>PLN02803 beta-amylase
Probab=98.11 E-value=1.1e-05 Score=89.75 Aligned_cols=114 Identities=23% Similarity=0.510 Sum_probs=82.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCC-CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCC-----C
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG-----G 128 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 128 (626)
.++.-+..|+++|++|++.|.+.|.|.+.|.. |++|||+| -.+++++|+++||++.+-.-=--||- |-| -
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 180 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIP 180 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 44556789999999999999999999999994 99999996 66779999999999754443344544 222 2
Q ss_pred CCccccc----cCCeeeec------------------------CChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006904 129 FPVWLKY----VPGISFRT------------------------DNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (626)
Q Consensus 129 ~P~WL~~----~p~i~~Rt------------------------~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 180 (626)
+|.|+.+ +|+|.+.. -=+.|.+.|+.|-..+.+.+ ||.|.-+|
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l---------~~~I~eI~ 251 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYL---------GGVIAEIQ 251 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHh---------cCceEEEE
Confidence 8999975 57875421 11236666666655543333 36888888
Q ss_pred c
Q 006904 181 I 181 (626)
Q Consensus 181 I 181 (626)
|
T Consensus 252 V 252 (548)
T PLN02803 252 V 252 (548)
T ss_pred e
Confidence 8
No 20
>PLN02801 beta-amylase
Probab=98.09 E-value=1.3e-05 Score=88.60 Aligned_cols=115 Identities=23% Similarity=0.496 Sum_probs=83.4
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCC-CCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCC-----C
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG-----G 128 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp-~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 128 (626)
.++.-+..|+++|++|++.|.+.|.|...|. .|++|||+| -.+++++|+++||++.+-.-=--||- |-| -
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 5666788999999999999999999999998 599999996 66779999999999754433344544 222 2
Q ss_pred CCccccc----cCCeeeec------------------------CChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006904 129 FPVWLKY----VPGISFRT------------------------DNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (626)
Q Consensus 129 ~P~WL~~----~p~i~~Rt------------------------~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 180 (626)
+|.|+.+ +|+|.+.. -=+.|.+.|+.|-..+.+.+. +|.|.-+|
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--------~~~I~eI~ 182 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLE--------AGVIIDIE 182 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhcc--------CCeeEEEE
Confidence 8999975 57764321 113466666666555544442 46888888
Q ss_pred c
Q 006904 181 I 181 (626)
Q Consensus 181 I 181 (626)
|
T Consensus 183 V 183 (517)
T PLN02801 183 V 183 (517)
T ss_pred E
Confidence 8
No 21
>PLN02161 beta-amylase
Probab=98.07 E-value=1.7e-05 Score=87.86 Aligned_cols=114 Identities=22% Similarity=0.376 Sum_probs=82.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCC-CCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCC-----C
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG-----G 128 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp-~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G 128 (626)
.++.-+..|+++|++|++.|.+.|.|.+.|. .|++|||+| -.+++++++++||++.+-.-=--|+- +-| -
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~Ip 190 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGIS 190 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCcc
Confidence 4555677899999999999999999999998 799999996 66779999999999765443344443 222 2
Q ss_pred CCccccc----cCCeeeecC--------------C----------hhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006904 129 FPVWLKY----VPGISFRTD--------------N----------EPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (626)
Q Consensus 129 ~P~WL~~----~p~i~~Rt~--------------~----------~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 180 (626)
+|.|+.+ +|+|.+... + +.|.+.|+.|-..+.+.+ ++.|.-+|
T Consensus 191 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~---------~~~I~eI~ 261 (531)
T PLN02161 191 LPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYI---------GNVIEEIS 261 (531)
T ss_pred CCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHh---------cCceEEEE
Confidence 7999975 577754211 1 246666666655553333 36788888
Q ss_pred c
Q 006904 181 I 181 (626)
Q Consensus 181 I 181 (626)
|
T Consensus 262 V 262 (531)
T PLN02161 262 I 262 (531)
T ss_pred e
Confidence 8
No 22
>TIGR03356 BGL beta-galactosidase.
Probab=97.89 E-value=3.3e-05 Score=85.69 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHCCCCEEEeceecCccCCC-CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccc
Q 006904 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 135 (626)
..|+++|+.||++|+|++|+-|.|...+|. +|++|.+|-...+++|+.|.++||.+|+-.=. =.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 568999999999999999999999999999 79999988889999999999999998877522 358999976
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 136 ~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
..+- .++...++..+|.+.+++.++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhC
Confidence 5542 346666666777777777666
No 23
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.63 E-value=7e-05 Score=81.52 Aligned_cols=74 Identities=24% Similarity=0.540 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHCCCCEEEeceecCccCCC-CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCC-----CCCc
Q 006904 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG-----GFPV 131 (626)
Q Consensus 58 ~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-----G~P~ 131 (626)
.-+..|+++|++|++.|.+.|.|...|.. |++|||+| -.++.++|++.||++.+-.-=--|+- |-| -+|.
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGg-NvgD~~~IpLP~ 92 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGG-NVGDDCNIPLPS 92 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSS-STTSSSEB-S-H
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCC-CCCCccCCcCCH
Confidence 45678999999999999999999999997 99999996 67779999999999765442233422 111 3799
Q ss_pred cccc
Q 006904 132 WLKY 135 (626)
Q Consensus 132 WL~~ 135 (626)
|+.+
T Consensus 93 Wv~~ 96 (402)
T PF01373_consen 93 WVWE 96 (402)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9974
No 24
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.43 E-value=0.00083 Score=70.89 Aligned_cols=225 Identities=22% Similarity=0.330 Sum_probs=109.8
Q ss_pred cCcEE-ECCEEeEEEEEEeeC---CCCChhhHHHHHHHHHHCCCCEEEecee--cCcc--------CC----CCceeeec
Q 006904 32 RKALL-INGQRRILFSGSIHY---PRSTPDMWEDLIQKAKDGGLDVIETYVF--WNVH--------EP----SPGNYNFE 93 (626)
Q Consensus 32 ~~~~~-idG~~~~l~sG~iHy---~R~~~~~W~d~l~k~K~~GlN~V~tyv~--Wn~h--------Ep----~~G~ydF~ 93 (626)
++.|. -||+||+.++ .-.+ .|...++|+..|+..|+.|||+|++=++ |... .| .++++||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 56777 8999999998 4444 3578899999999999999999998766 4422 12 12236776
Q ss_pred cc-----chHHHHHHHHHHcCcEEEEee---CceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006904 94 GR-----YDLVRFIKTIQKAGLYAHLRI---GPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (626)
Q Consensus 94 G~-----~dL~~fl~la~~~GL~Vilr~---GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~ 165 (626)
.- ..|++.|+.|.+.||.+.|-| +||.-+-|-.| +.+ + =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~---------~~~-m------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG---------PNI-M------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH----------------TTS-S-------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc---------ccC-C------CHHHHHHHHHHHHHHHhc
Confidence 53 489999999999999986543 23332333322 111 0 136788999999999996
Q ss_pred cccccccCCceEeecccccccccccccCcccHHHHHHHHHHHHHcCCCcc-eeecCCC-CCCC-----cccc--C-CCCc
Q 006904 166 ENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVP-WVMCKEE-DAPD-----PVIN--S-CNGF 235 (626)
Q Consensus 166 ~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP-~~~~~~~-~~p~-----~vi~--~-~ng~ 235 (626)
.+ +|| +=|-||+ . ......++.+.+.+..++..-.-+ .++..+. ..++ +-++ . ..|.
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 53 465 5588888 1 123556666666666666543222 3332221 1111 1011 1 1122
Q ss_pred cc---Cc-------CC-CCCCCCCeEEeee-cCccccccCCCCCCCCHHHHHHHHHHHHHhCC
Q 006904 236 YC---DA-------FT-PNQPYKPTIWTEA-WSGWFTEFGGPIHQRPVQDLAFAAARFIQKGG 286 (626)
Q Consensus 236 ~~---~~-------~~-~~~p~~P~~~tE~-~~Gwf~~wG~~~~~r~~~d~~~~~~~~~~~g~ 286 (626)
.. +. .. ...|.||.+..|- +.|--..+.+.....+++|+-...=..+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 11 11 3468999999985 33433222222334578887665545555666
No 25
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.43 E-value=0.00033 Score=74.88 Aligned_cols=159 Identities=18% Similarity=0.286 Sum_probs=110.3
Q ss_pred EEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEec--eecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceee
Q 006904 44 LFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETY--VFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVC 121 (626)
Q Consensus 44 l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~ty--v~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~ 121 (626)
.++.+++..+...+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|--.+ -+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv- 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV- 81 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE-
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE-
Confidence 688999988775542 3334444568888875 6699999999999999 89999999999999985332 11
Q ss_pred eecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccccccc---------cc
Q 006904 122 AEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSK---------LL 192 (626)
Q Consensus 122 aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~---------~~ 192 (626)
|.. ..|.|+...+.... .+-+..++.++++++.++.++++. |.|..|-|=||-=.... -+
T Consensus 82 --W~~-~~P~w~~~~~~~~~-~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~~~ 150 (320)
T PF00331_consen 82 --WHS-QTPDWVFNLANGSP-DEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSPWY 150 (320)
T ss_dssp --ESS-SS-HHHHTSTTSSB-HHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSHHH
T ss_pred --Ecc-cccceeeeccCCCc-ccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCChhh
Confidence 433 78999986511000 001247888899999998888721 79999999999643221 12
Q ss_pred CcccHHHHHHHHHHHHHcCCCcceeecCCC
Q 006904 193 GAAGHNYMTWAAKMAVEMGTGVPWVMCKEE 222 (626)
Q Consensus 193 ~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~ 222 (626)
...|.+|+..+-++|++..-++.++.++..
T Consensus 151 ~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 151 DALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 234678999999999998888888887753
No 26
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.03 E-value=0.002 Score=69.34 Aligned_cols=105 Identities=25% Similarity=0.480 Sum_probs=68.4
Q ss_pred HHHHHHHHHCCCCEEEeceecCccCCCC-ceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCcccc---c
Q 006904 60 EDLIQKAKDGGLDVIETYVFWNVHEPSP-GNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK---Y 135 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~tyv~Wn~hEp~~-G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~---~ 135 (626)
+|.|+-+|+.|+|.||.=| | +.|.. |..|.+ +..+..+.|+++||.|+|.+- | --.|-- +
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-Y---------SD~WaDPg~Q 90 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-Y---------SDFWADPGKQ 90 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--S---------SSS--BTTB-
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-c---------cCCCCCCCCC
Confidence 5899999999999999988 4 45555 666666 777777888899999999862 1 123332 1
Q ss_pred -cCCeeeec-CChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccc
Q 006904 136 -VPGISFRT-DNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGA 187 (626)
Q Consensus 136 -~p~i~~Rt-~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~ 187 (626)
.|. .-+. +-..-.+++..|++.+++.|++. |=.+=||||-||...
T Consensus 91 ~~P~-aW~~~~~~~l~~~v~~yT~~vl~~l~~~------G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 91 NKPA-AWANLSFDQLAKAVYDYTKDVLQALKAA------GVTPDMVQVGNEINN 137 (332)
T ss_dssp B--T-TCTSSSHHHHHHHHHHHHHHHHHHHHHT------T--ESEEEESSSGGG
T ss_pred CCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCccEEEeCccccc
Confidence 222 1222 33567788999999999999954 457889999999754
No 27
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.00 E-value=0.00091 Score=74.85 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCC--CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccc
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWL 133 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 133 (626)
-..|+++|+.||++|+|+-+.-+.|...+|. +|++|-+|...-+++|+.++++||..++-. -.-.+|.||
T Consensus 57 y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l 128 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWL 128 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHH
T ss_pred hhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eecccccce
Confidence 3569999999999999999999999999999 699999999999999999999999977664 245799999
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 134 KYVPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 134 ~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
.+.-+- .++...+.-.+|.+.+++.++
T Consensus 129 ~~~ggw----~~~~~~~~F~~Ya~~~~~~~g 155 (455)
T PF00232_consen 129 EDYGGW----LNRETVDWFARYAEFVFERFG 155 (455)
T ss_dssp HHHTGG----GSTHHHHHHHHHHHHHHHHHT
T ss_pred eecccc----cCHHHHHHHHHHHHHHHHHhC
Confidence 874442 245566666667777777776
No 28
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.0035 Score=69.27 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=74.9
Q ss_pred ChhhH-----HHHHHHHHHCCCCEEEeceecCccCCCC--ceeee--cccchHHHHHHHHHHcCcEEEEeeCceeeeecC
Q 006904 55 TPDMW-----EDLIQKAKDGGLDVIETYVFWNVHEPSP--GNYNF--EGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWN 125 (626)
Q Consensus 55 ~~~~W-----~d~l~k~K~~GlN~V~tyv~Wn~hEp~~--G~ydF--~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~ 125 (626)
...-| ++.+..||.+|||+||+++.|..+++.. ..+-. +--.-|++.|+.|++.||+|+|-.-=+-+ -.
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~--~~ 143 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPG--GN 143 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCC--CC
Confidence 45557 8899999999999999999954446543 22222 11127899999999999999998421100 01
Q ss_pred CCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccc
Q 006904 126 FGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGA 187 (626)
Q Consensus 126 ~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~ 187 (626)
++--..|....-. ...+.+++..+.++.|+.+.+. .-.||++|+=||.-.
T Consensus 144 ~~~~~s~~~~~~~-----~~~~~~~~~~~~w~~ia~~f~~-------~~~VIg~~~~NEP~~ 193 (407)
T COG2730 144 NGHEHSGYTSDYK-----EENENVEATIDIWKFIANRFKN-------YDTVIGFELINEPNG 193 (407)
T ss_pred CCcCccccccccc-----ccchhHHHHHHHHHHHHHhccC-------CCceeeeeeecCCcc
Confidence 1112233332110 1233445555566666666663 458999999999974
No 29
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.85 E-value=0.0041 Score=76.18 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=70.5
Q ss_pred EEEEEEEEeCCCCccccCCCccEEEEeecCcEEEEEECCeEEEEEEcCCCcceEEEEeeeeecCccceEEEEEeeccCCC
Q 006904 472 LWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVGLPN 551 (626)
Q Consensus 472 lWY~T~v~~~~~d~~~~~~~~~~L~v~s~gh~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v~L~~G~N~islLS~tvGL~n 551 (626)
.||+++|.+..+ +.+.+..|+.+......+|||||++||...|+. ..|.|+..--|+.|.|.|++.-.. ..
T Consensus 111 g~Yrr~F~lp~~----~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~---~~ 181 (1021)
T PRK10340 111 GAYQRTFTLSDG----WQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQ---WA 181 (1021)
T ss_pred EEEEEEEEeCcc----cccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEe---cC
Confidence 699999999643 235678999999999999999999999877655 347777666788999998775431 12
Q ss_pred cccccee----ecceeeeeEEEeccC
Q 006904 552 VGGHYET----WNTGILGPVALHGLD 573 (626)
Q Consensus 552 ~Ga~~E~----~~aGi~g~V~l~g~~ 573 (626)
-|.|.|. +..||.++|.|.-.+
T Consensus 182 d~s~le~qd~w~~sGI~R~V~L~~~p 207 (1021)
T PRK10340 182 DSTYLEDQDMWWLAGIFRDVYLVGKP 207 (1021)
T ss_pred CCCccccCCccccccccceEEEEEeC
Confidence 3455553 569999999996543
No 30
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.83 E-value=0.0042 Score=76.07 Aligned_cols=93 Identities=23% Similarity=0.259 Sum_probs=69.2
Q ss_pred eEEEEEEEEeCCCCccccCCC-ccEEEEeecCcEEEEEECCeEEEEEEcCCCcceEEEEeeeeecCccceEEEEEeeccC
Q 006904 471 YLWYITSVDIGSSESFLHGGE-LPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVGL 549 (626)
Q Consensus 471 YlWY~T~v~~~~~d~~~~~~~-~~~L~v~s~gh~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v~L~~G~N~islLS~tvGL 549 (626)
-.||+++|++..+- .+. +..|+.+.......|||||+++|...|+. ..|.|+..-.|+.|.|.|++.-. -
T Consensus 121 ~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~---~ 191 (1027)
T PRK09525 121 TGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVL---R 191 (1027)
T ss_pred eEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEE---e
Confidence 47999999996432 233 67899999999999999999999987754 44778777678999998776631 1
Q ss_pred CCcccccee----ecceeeeeEEEecc
Q 006904 550 PNVGGHYET----WNTGILGPVALHGL 572 (626)
Q Consensus 550 ~n~Ga~~E~----~~aGi~g~V~l~g~ 572 (626)
..-|.|+|. +..||.++|.|.-.
T Consensus 192 ~sdgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 192 WSDGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred cCCCCccccCCceeeccccceEEEEEc
Confidence 112455553 55899999998544
No 31
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=96.82 E-value=0.026 Score=64.08 Aligned_cols=334 Identities=19% Similarity=0.303 Sum_probs=165.9
Q ss_pred EEeEEEEEEee------CCCCChhhHHHHHHHH---HHCCCCEEEecee--------cCccCCCCceee---ecc-c---
Q 006904 40 QRRILFSGSIH------YPRSTPDMWEDLIQKA---KDGGLDVIETYVF--------WNVHEPSPGNYN---FEG-R--- 95 (626)
Q Consensus 40 ~~~~l~sG~iH------y~R~~~~~W~d~l~k~---K~~GlN~V~tyv~--------Wn~hEp~~G~yd---F~G-~--- 95 (626)
|++.=++|++= ..+.+++.=++.|+.+ +-+|++.+|+.+- +.+-+ .|+.++ |+= +
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 55566888874 2234444333333333 5589999998873 22222 233221 221 1
Q ss_pred chHHHHHHHHHHc--CcEEEEeeCceeeeecCCCCCCccccccCCe----eeec-CChhHHHHHHHHHHHHHHHHHhccc
Q 006904 96 YDLVRFIKTIQKA--GLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI----SFRT-DNEPFKRAMQGFTEKIVNLMKSENL 168 (626)
Q Consensus 96 ~dL~~fl~la~~~--GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i----~~Rt-~~~~yl~~~~~~~~~i~~~l~~~~l 168 (626)
..+..+|+.|++. +|+++.-| | -.|.|++....+ .++. .++.|.+....|+.+.++.++++++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------W---SpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI 222 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------W---SPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGI 222 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT-
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------C---CCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCC
Confidence 1235678877764 57777665 4 379999863222 2442 3457888888888888888885544
Q ss_pred ccccCCceEeecccccccccc---cccC-----c-ccHHHHH-HHHHHHHHcCC--CcceeecCC--CCCCC---ccccC
Q 006904 169 FESQGGPIILSQIENEYGAQS---KLLG-----A-AGHNYMT-WAAKMAVEMGT--GVPWVMCKE--EDAPD---PVINS 231 (626)
Q Consensus 169 ~~~~gGpII~~QIENEyg~~~---~~~~-----~-~~~~Y~~-~l~~~~~~~g~--~vP~~~~~~--~~~p~---~vi~~ 231 (626)
||-++-+.||..... ..|. + .-+++++ .|....++.++ ++=+++++. .+.|+ .+++.
T Consensus 223 ------~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 223 ------PIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp -------ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ------CeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 999999999987521 1121 1 2356665 37778888766 665655542 22332 22221
Q ss_pred ------C--CCccc--C-cC-------CCCCCCCCeEEeeecCccccccCCCCC---CCCHHHHHHHHHHHHHhCCeeee
Q 006904 232 ------C--NGFYC--D-AF-------TPNQPYKPTIWTEAWSGWFTEFGGPIH---QRPVQDLAFAAARFIQKGGSFIN 290 (626)
Q Consensus 232 ------~--ng~~~--~-~~-------~~~~p~~P~~~tE~~~Gwf~~wG~~~~---~r~~~d~~~~~~~~~~~g~s~~n 290 (626)
. -+++| + .. ....|++..+.||-..|.. .|+.... -..++..+..+..-+..+.+ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 0 13344 1 11 1235889999999876531 1221111 11234445555555666544 2
Q ss_pred eeEe------ecCCCCCCC-CCCCcccccccCCCCCCCCCCCCchhhHHHHHHHHHHHHhhhccccCCCccccCCCceee
Q 006904 291 YYMY------HGGTNFGRS-AGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERALVSADPIVTSLGGFQQA 363 (626)
Q Consensus 291 yYM~------hGGTNfG~~-~G~~~~~tSYDy~Apl~E~G~~~~pky~~lk~lh~~l~~~~~~L~~~~~~~~~lg~~~e~ 363 (626)
+-++ .||-|++.. ..++.++.. +. +| -.++|.|..|..+.+||+--+..+-... ...+..++.
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~--~~~~p~yY~~gHfSKFV~PGa~RI~st~---~~~~~~l~~ 443 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GE--FYKQPEYYAMGHFSKFVRPGAVRIGSTS---SSSDSGLEA 443 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TE--EEE-HHHHHHHHHHTTS-TT-EEEEEEE---SSSTTTEEE
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----Ce--EEEcHHHHHHHHHhcccCCCCEEEEeec---cCCCCceeE
Confidence 2222 488887532 123332211 11 12 2357999999999999985333332111 011224677
Q ss_pred EEeecCCCceEEEEEeCCCCce-EEEEECC-------eEEeeCCceEE
Q 006904 364 HVYSSESGDCAAFLSNYDTKSA-ARVLFNN-------MHYNLPPWSIS 403 (626)
Q Consensus 364 ~~y~~~~~~~~~Fl~N~~~~~~-~~V~f~~-------~~y~lp~~svs 403 (626)
..|...++.-++-+.|..+... ++|++++ ..++|||+||.
T Consensus 444 vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~~ 491 (496)
T PF02055_consen 444 VAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSIV 491 (496)
T ss_dssp EEEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTEE
T ss_pred EEEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCceE
Confidence 7787666677777778655433 3576653 46899998863
No 32
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.74 E-value=0.0094 Score=63.28 Aligned_cols=133 Identities=22% Similarity=0.322 Sum_probs=101.9
Q ss_pred HHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCC
Q 006904 66 AKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDN 145 (626)
Q Consensus 66 ~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~ 145 (626)
+|+.+.=|-+.-.=|+..||++|.|+|+ --++..+.|+++||.+.-- +.| |.. -.|.|+.... -.-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccc-----cCh
Confidence 6666666666667799999999999999 5788999999999976322 222 433 6899997532 244
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccccccc-------ccCcccHHHHHHHHHHHHHcCCCcceee
Q 006904 146 EPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSK-------LLGAAGHNYMTWAAKMAVEMGTGVPWVM 218 (626)
Q Consensus 146 ~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~-------~~~~~~~~Y~~~l~~~~~~~g~~vP~~~ 218 (626)
++.++.|++++..++.+++ |-|+.|-|=||-=.-+. ..+-.+.+|+++.-+.|++.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999988 45999999999643221 1223688999999999999888777887
Q ss_pred cCC
Q 006904 219 CKE 221 (626)
Q Consensus 219 ~~~ 221 (626)
++.
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 765
No 33
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.74 E-value=0.0081 Score=69.54 Aligned_cols=100 Identities=25% Similarity=0.252 Sum_probs=70.7
Q ss_pred CcceEEEEEEEEeCCCCccccCCCccEEEEeecCcEEEEEECCeEEEEEEcCCCcceEEEEeeeeecCccc-eEEEEEee
Q 006904 468 ASDYLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRN-KIALLSVA 546 (626)
Q Consensus 468 ~sDYlWY~T~v~~~~~d~~~~~~~~~~L~v~s~gh~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v~L~~G~N-~islLS~t 546 (626)
.....||+++|++... +.+++..|+.+.......|||||++||...|.. ..|.|+..-.|+.|.| .|++--..
T Consensus 63 ~~G~~WYrr~f~lp~~----~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~n 136 (604)
T PRK10150 63 YVGDVWYQREVFIPKG----WAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVNN 136 (604)
T ss_pred CcccEEEEEEEECCcc----cCCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEec
Confidence 4556899999999642 235678999999999999999999999987654 3477777667888976 77766422
Q ss_pred cc----CCCccccce--------------eecceeeeeEEEeccCC
Q 006904 547 VG----LPNVGGHYE--------------TWNTGILGPVALHGLDQ 574 (626)
Q Consensus 547 vG----L~n~Ga~~E--------------~~~aGi~g~V~l~g~~~ 574 (626)
-- +| .|.+.| ....||.++|.|.-.+.
T Consensus 137 ~~~~~~~p-~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~~~ 181 (604)
T PRK10150 137 ELNWQTLP-PGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTTPK 181 (604)
T ss_pred CCCcccCC-CCccccCCccccccccccccccccCCCceEEEEEcCC
Confidence 10 11 122211 24789999999965433
No 34
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.74 E-value=0.027 Score=54.89 Aligned_cols=134 Identities=15% Similarity=0.192 Sum_probs=79.8
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEeceecCccC-----CC---CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeee
Q 006904 52 PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHE-----PS---PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (626)
Q Consensus 52 ~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hE-----p~---~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aE 123 (626)
-.++++.|+++++.||+.|+|+|=.= |...+ |. ++.|.-....-|+.+|++|++.||+|.+..+.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~----- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF----- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 46899999999999999999998421 22111 11 22333334568999999999999999998742
Q ss_pred cCCCCCCccccccCCeeeecCChhH-HHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHH
Q 006904 124 WNFGGFPVWLKYVPGISFRTDNEPF-KRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTW 202 (626)
Q Consensus 124 w~~GG~P~WL~~~p~i~~Rt~~~~y-l~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~ 202 (626)
-|.|-.. .|+.. .+.-++...+|.++...| ...-++=|=.|..... ....+..+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~yg~h-------~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRYGHH-------PSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHHcCC-------CCCceEEEecccCCcc----cchHHHHHH
Confidence 2344431 22222 122233445555544433 3666787888876542 223455555
Q ss_pred HHHHHHHcCCCcce
Q 006904 203 AAKMAVEMGTGVPW 216 (626)
Q Consensus 203 l~~~~~~~g~~vP~ 216 (626)
|.+.+++.--+.|.
T Consensus 144 l~~~lk~~s~~~Pv 157 (166)
T PF14488_consen 144 LGKYLKQISPGKPV 157 (166)
T ss_pred HHHHHHHhCCCCCe
Confidence 55555554334444
No 35
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.48 E-value=0.003 Score=71.10 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCC--CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccc
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWL 133 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 133 (626)
-..|+++++.||++|+|+.|+-+.|...+|. ++++|=+|....+++|+.|.++||..++-. ..=.+|.||
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l 141 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHL 141 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHH
Confidence 3457999999999999999999999999997 556788888899999999999999987664 133689999
Q ss_pred ccc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 134 KYV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 134 ~~~-p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
... -+- .++...++-.+|.+.+++.++
T Consensus 142 ~~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 142 VTEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HHhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 753 342 234444444555555555554
No 36
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.45 E-value=0.0032 Score=70.98 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHCCCCEEEeceecCccCCC--CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCcccc
Q 006904 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (626)
..|+++|+.||++|+|+-|+-+.|.-.+|. +|++|-+|....+++|+.|.++||..++-. -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 357899999999999999999999999997 567888899999999999999999977664 1236899997
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 135 ~~-p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
+. -|- .|+...++-.+|.+.+++.++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 53 442 345555555566666666665
No 37
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.37 E-value=0.025 Score=59.48 Aligned_cols=125 Identities=24% Similarity=0.295 Sum_probs=83.4
Q ss_pred HHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHH---HcCcEEEEeeCceeeeecCCCCCCc-ccc
Q 006904 59 WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ---KAGLYAHLRIGPYVCAEWNFGGFPV-WLK 134 (626)
Q Consensus 59 W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~P~-WL~ 134 (626)
=.|.|+-+|+.|+|-||.-| |+..--.-|+=-=.|+.|+.+.+++|+ +.||+|+|.+= .-+ |-.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwaD 132 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWAD 132 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhccC
Confidence 46899999999999999865 665544455544457889999998865 57999999861 112 221
Q ss_pred ---c-cCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccc-cccccCcccHHHHHH
Q 006904 135 ---Y-VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGA-QSKLLGAAGHNYMTW 202 (626)
Q Consensus 135 ---~-~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~-~~~~~~~~~~~Y~~~ 202 (626)
+ .|..-...+-+.-++++-.|++..+..|+++.. -+=||||-||-.+ +-+..|+.+ .+-++
T Consensus 133 PakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi------~pdmVQVGNEtn~gflwp~Ge~~-~f~k~ 198 (403)
T COG3867 133 PAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGI------LPDMVQVGNETNGGFLWPDGEGR-NFDKM 198 (403)
T ss_pred hhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCC------CccceEeccccCCceeccCCCCc-ChHHH
Confidence 1 232111123356677888899999999996654 5679999999753 334455432 44433
No 38
>PLN02998 beta-glucosidase
Probab=96.23 E-value=0.0053 Score=69.60 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCC-CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCcccc
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (626)
-..|+++|+.||++|+|+-|+-+.|.-.+|. .|.+|-+|...-+++|+.+.++||..++-.= .=-+|.||.
T Consensus 81 Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~--------H~dlP~~L~ 152 (497)
T PLN02998 81 YHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH--------HFDLPQALE 152 (497)
T ss_pred HHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec--------CCCCCHHHH
Confidence 3458999999999999999999999999997 6788999999999999999999998665541 225799997
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 135 ~~-p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
+. -|-.=|..=..|.++++..++++.++++
T Consensus 153 ~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 153 DEYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred HhhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 63 4421122224456666555555555554
No 39
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.20 E-value=0.0059 Score=68.74 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHCCCCEEEeceecCccCCC-CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccc
Q 006904 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 135 (626)
..|+++|+.||++|+|+-|+-+.|.-.+|. +|.+|-+|...-+++|+.|.++||.-++-. -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 457899999999999999999999999997 578899999999999999999999866654 12358999986
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHH
Q 006904 136 VPGISFRTDNEPFKRAMQGFTEKIVN 161 (626)
Q Consensus 136 ~p~i~~Rt~~~~yl~~~~~~~~~i~~ 161 (626)
.-|-.=|..-..|.++++..++++.+
T Consensus 126 ~GGW~n~~~v~~F~~YA~~~~~~fgd 151 (469)
T PRK13511 126 NGDWLNRENIDHFVRYAEFCFEEFPE 151 (469)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 54421111113345555555554444
No 40
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.17 E-value=0.0073 Score=68.16 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHCCCCEEEeceecCccCCC--CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCcccc
Q 006904 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (626)
..|+++|+.||++|+|+-|+-+.|.-.+|. +|++|=+|...-+++|+.+.++||..++-. -.=-+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 568999999999999999999999999997 667888898999999999999999866554 1225899997
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 135 ~~-p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
+. -|-.=|..=..|.++++..++++.+.++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 54 4421121123455666555555555554
No 41
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=96.14 E-value=2.3 Score=47.00 Aligned_cols=251 Identities=14% Similarity=0.178 Sum_probs=131.3
Q ss_pred eeCCCCChhhHHHHHHHHHHCCCCEEEe-------ceecCccCCCCceeeecccch-HHHHHHHHHHcCcEEEEeeCcee
Q 006904 49 IHYPRSTPDMWEDLIQKAKDGGLDVIET-------YVFWNVHEPSPGNYNFEGRYD-LVRFIKTIQKAGLYAHLRIGPYV 120 (626)
Q Consensus 49 iHy~R~~~~~W~d~l~k~K~~GlN~V~t-------yv~Wn~hEp~~G~ydF~G~~d-L~~fl~la~~~GL~Vilr~GPyi 120 (626)
+.+.+..|+.|. +.+|++|+.-|-. +-.|.-.-..-..-+-.-.+| |..|.+.|+++||++-+ |.
T Consensus 76 F~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~ 148 (384)
T smart00812 76 FTAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YH 148 (384)
T ss_pred CCchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----Ec
Confidence 334456777775 4778888885542 223554433222222111334 56678999999996655 54
Q ss_pred ee-ecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHH-
Q 006904 121 CA-EWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHN- 198 (626)
Q Consensus 121 ~a-Ew~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~- 198 (626)
.. +|.+ |.|....+.-..+.+.+.|.++++.|..+|.+.|.++ ||-+++- +-..+. ....
T Consensus 149 S~~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~-------~~~~~ 210 (384)
T smart00812 149 SLFDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEA-------PDDYW 210 (384)
T ss_pred CHHHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCC-------ccchh
Confidence 43 6654 5443211111123456788888888888888888743 2333331 111111 1111
Q ss_pred HHHHHHHHHHHcCCCc-ceeecCCCCCCCccccCCCCc--cc-CcCCCCC-CCCCeEE-eeecCccccccCC-CCCCCCH
Q 006904 199 YMTWAAKMAVEMGTGV-PWVMCKEEDAPDPVINSCNGF--YC-DAFTPNQ-PYKPTIW-TEAWSGWFTEFGG-PIHQRPV 271 (626)
Q Consensus 199 Y~~~l~~~~~~~g~~v-P~~~~~~~~~p~~vi~~~ng~--~~-~~~~~~~-p~~P~~~-tE~~~Gwf~~wG~-~~~~r~~ 271 (626)
-.+.+.++++++.-+. -.+.+.... .. .+. .|. .| +...+.. ...|--. +=.-.+|+-+-+. ....+++
T Consensus 211 ~~~~l~~~~~~~qP~~~~vvvn~R~~-~~--~~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~ 286 (384)
T smart00812 211 RSKEFLAWLYNLSPVKDTVVVNDRWG-GT--GCK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSP 286 (384)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcccc-cc--CCC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCH
Confidence 1344666666654442 012222210 00 000 011 11 1111111 1112100 0011234433232 2236799
Q ss_pred HHHHHHHHHHHHhCCeeeeeeEeecCCCCCCCCCCCcccccccCCCCCCCCCCCCchhhHHHHHHHHHHHHhhhccccCC
Q 006904 272 QDLAFAAARFIQKGGSFINYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERALVSAD 351 (626)
Q Consensus 272 ~d~~~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lk~lh~~l~~~~~~L~~~~ 351 (626)
+++...+....++||+++ + |. +-+.+|.+-+..-..|+++.+.|+..++++-.+.
T Consensus 287 ~~li~~l~~~Vsk~GnlL---L-----NV-----------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr 341 (384)
T smart00812 287 KELIRDLVDIVSKGGNLL---L-----NV-----------------GPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTR 341 (384)
T ss_pred HHHHHHHhhhcCCCceEE---E-----cc-----------------CCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCC
Confidence 999999999999998863 1 22 2346788877778899999999999999888776
Q ss_pred Cc
Q 006904 352 PI 353 (626)
Q Consensus 352 ~~ 353 (626)
|.
T Consensus 342 ~~ 343 (384)
T smart00812 342 PW 343 (384)
T ss_pred CC
Confidence 64
No 42
>PLN02814 beta-glucosidase
Probab=96.10 E-value=0.0064 Score=69.01 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCC-CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCcccc
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (626)
-..|+++|+.||++|+|+-|+-+.|.-.+|. +|.+|-+|...-+++|+.|.++||..++-.= .=-+|.||.
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~--------H~dlP~~L~ 147 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY--------HYDLPQSLE 147 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec--------CCCCCHHHH
Confidence 3568999999999999999999999999996 6889999999999999999999998666541 224799997
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 135 ~~-p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
+. -|-.=|..-..|.++++..++++.+++|
T Consensus 148 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 148 DEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred HhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 64 4421111123455555555555544443
No 43
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.05 E-value=0.0081 Score=67.78 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCC--CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccc
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWL 133 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 133 (626)
-..|+++|+.||++|+|+-|+-+.|.-.+|. +|.+|=+|...-+++|+.|.++||.-++-. -.=-+|.||
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L 137 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHL 137 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHH
Confidence 3558999999999999999999999999997 566888898899999999999999866554 122589999
Q ss_pred ccc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 134 KYV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 134 ~~~-p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
.+. -|-.=|..-..|.++++..++++.+++|
T Consensus 138 ~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 138 VTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HHhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 753 4431121224455666555555555554
No 44
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.99 E-value=0.0089 Score=67.31 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHCCCCEEEeceecCccCCC-CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccc
Q 006904 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 135 (626)
..|+++|+.||++|+|+-|+-+.|.-.+|. +|++|=+|...-+++|+.|.++||.-++-.= .=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH--------HFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc--------CCCCcHHHHH
Confidence 458899999999999999999999999996 6788888999999999999999998776641 2258999986
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 136 ~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
.-|- .++...++-.+|.+.+++.++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 234444444444444444443
No 45
>PLN02849 beta-glucosidase
Probab=95.86 E-value=0.011 Score=67.18 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCC-CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCcccc
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~-~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (626)
-..|+++|+.||++|+|+-|+-+.|.-.+|. .|++|=+|...-+++|+.|.++||.-++-. -.=-+|.||.
T Consensus 78 YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~ 149 (503)
T PLN02849 78 YHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLE 149 (503)
T ss_pred HHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHH
Confidence 3568999999999999999999999999997 478888899999999999999999866554 1225899997
Q ss_pred cc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 135 YV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 135 ~~-p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
+. -|-.=|..=..|.++++..++++.++++
T Consensus 150 ~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 150 DDYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred HhcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 63 4421121224455666555555555554
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.42 E-value=0.085 Score=49.61 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=66.6
Q ss_pred HHHHHHHHCCCCEEEece-------ec--CccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCc
Q 006904 61 DLIQKAKDGGLDVIETYV-------FW--NVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPV 131 (626)
Q Consensus 61 d~l~k~K~~GlN~V~tyv-------~W--n~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~ 131 (626)
+.++.+|++|+|+|.++. +| ..|.+.|+- ++.-|..++++|++.||.|++|...- --|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 346788999999998743 22 345555554 22366899999999999999998654 33444455799
Q ss_pred cccccCCee-------------eecCChhHHHHHHHHHHHHHHHHH
Q 006904 132 WLKYVPGIS-------------FRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 132 WL~~~p~i~-------------~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
|+...++-+ .-.-|.+|++++.+-+++|++.+.
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYD 124 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCC
Confidence 997543211 113356788887777777766554
No 47
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.64 E-value=0.05 Score=60.72 Aligned_cols=101 Identities=21% Similarity=0.300 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCCCc--eeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccc
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPG--NYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWL 133 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G--~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 133 (626)
-..++++|+.||++|+|+.|+-|.|...-|..+ +.|=.|-..-+++++.|.++|+.-++-.= .=-+|.||
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~--------Hfd~P~~L 129 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY--------HFDLPLWL 129 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec--------ccCCcHHH
Confidence 345789999999999999999999999999755 48888999999999999999999776641 22479999
Q ss_pred ccc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 134 KYV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 134 ~~~-p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
.+. -|-.=|..=..|.++.+..+++.-+.++
T Consensus 130 ~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 130 QKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred hhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 874 3532222223344444444444433333
No 48
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=93.00 E-value=0.45 Score=53.90 Aligned_cols=142 Identities=19% Similarity=0.265 Sum_probs=74.0
Q ss_pred EEEeeCCCCChhhHHHHHHHHH-HCCCCEEEec-ee---cCcc-C-CCCc--eeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 46 SGSIHYPRSTPDMWEDLIQKAK-DGGLDVIETY-VF---WNVH-E-PSPG--NYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 46 sG~iHy~R~~~~~W~d~l~k~K-~~GlN~V~ty-v~---Wn~h-E-p~~G--~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
-|.-|.-....+.|+..|+.++ +.||.-||+. +| .... | ..+| .|||+ .||.+++...++||+-.+..
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 3444554567788999999987 6899999974 22 1111 1 1233 39999 99999999999999988887
Q ss_pred CceeeeecCCCCCCccccccCCeeee--------cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccccc
Q 006904 117 GPYVCAEWNFGGFPVWLKYVPGISFR--------TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQ 188 (626)
Q Consensus 117 GPyi~aEw~~GG~P~WL~~~p~i~~R--------t~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~ 188 (626)
|. .|.++...+...+. .+...|.+.++.+++.+++++..+.+ .+ =.+.|.||.+..
T Consensus 105 ~f----------~p~~~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev--~~----W~fEiWNEPd~~ 168 (486)
T PF01229_consen 105 GF----------MPMALASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEV--ST----WYFEIWNEPDLK 168 (486)
T ss_dssp -S----------B-GGGBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHH--TT----SEEEESS-TTST
T ss_pred Ee----------chhhhcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccc--cc----eeEEeCcCCCcc
Confidence 53 45555432222221 12344555566666666555432221 11 146899998753
Q ss_pred ccccCcccHHHHHHHHHH
Q 006904 189 SKLLGAAGHNYMTWAAKM 206 (626)
Q Consensus 189 ~~~~~~~~~~Y~~~l~~~ 206 (626)
.-.......+|.+.-+..
T Consensus 169 ~f~~~~~~~ey~~ly~~~ 186 (486)
T PF01229_consen 169 DFWWDGTPEEYFELYDAT 186 (486)
T ss_dssp TTSGGG-HHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHH
Confidence 211111234566544433
No 49
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.72 E-value=1.4 Score=51.54 Aligned_cols=53 Identities=25% Similarity=0.236 Sum_probs=38.3
Q ss_pred HHHHHCCCCEEEe-ceecCccCCCCc---------eeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 64 QKAKDGGLDVIET-YVFWNVHEPSPG---------NYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 64 ~k~K~~GlN~V~t-yv~Wn~hEp~~G---------~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.-+|++|+|+|.. +|+..-....=| .-.|.+..||.+|++.|+++||.|||..
T Consensus 164 dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 164 PYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6679999999997 676532111001 1134556799999999999999999984
No 50
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=92.48 E-value=1.3 Score=50.50 Aligned_cols=184 Identities=17% Similarity=0.282 Sum_probs=113.4
Q ss_pred cCcEEECCEEeEEEEEEeeCC-----CCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHH
Q 006904 32 RKALLINGQRRILFSGSIHYP-----RSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ 106 (626)
Q Consensus 32 ~~~~~idG~~~~l~sG~iHy~-----R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~ 106 (626)
+..|.|||.|.++-++.--++ |.+-+.-+-.|+.++++|+|++++ |.. |...-+.|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----------GvYEsd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----------GVYESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----------ccccchhHHHHhh
Confidence 467899999999988875542 234444556799999999999998 332 3345689999999
Q ss_pred HcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecc--ccc
Q 006904 107 KAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQI--ENE 184 (626)
Q Consensus 107 ~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI--ENE 184 (626)
+.||.|--.. =|.||-. ..|+.|+.-++.=++.=+.+|+.|+ .||.+-= |||
T Consensus 393 ~lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccH
Confidence 9999775332 1344432 2467899999888888888888665 5666644 555
Q ss_pred ccccccccCc-------ccHHHH----HHHHHHHHHcCCCcceeecCCCC----CCCccccC-----CCCc---c--c-C
Q 006904 185 YGAQSKLLGA-------AGHNYM----TWAAKMAVEMGTGVPWVMCKEED----APDPVINS-----CNGF---Y--C-D 238 (626)
Q Consensus 185 yg~~~~~~~~-------~~~~Y~----~~l~~~~~~~g~~vP~~~~~~~~----~p~~vi~~-----~ng~---~--~-~ 238 (626)
-.-.+.-|+. .-++|. +-+++++..-.-..|.||..... .|+.-+.. .+|. | . |
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSPsNG~ete~e~~VS~NP~dn~~GDVHfYdy~~d 526 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSPSNGKETEPENYVSSNPQDNQNGDVHFYDYTKD 526 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCCCCCcccCccccccCCCccccCCceEeeehhhc
Confidence 3222212221 224444 33555555556678988865321 23322211 1221 1 1 4
Q ss_pred cCCCCCCCCCeEEeeec
Q 006904 239 AFTPNQPYKPTIWTEAW 255 (626)
Q Consensus 239 ~~~~~~p~~P~~~tE~~ 255 (626)
-|.+.---+|.+.+|+.
T Consensus 527 ~W~~~ifp~pRfaSEyG 543 (867)
T KOG2230|consen 527 GWDPGIFPRPRFASEYG 543 (867)
T ss_pred cCCCCcccCchhhhhcC
Confidence 56654445788999983
No 51
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=91.83 E-value=2.1 Score=44.37 Aligned_cols=131 Identities=16% Similarity=0.220 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEE-EeeCceeeeecCCCCCCcccc
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWLK 134 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~ 134 (626)
..-|++.|+.+++.|++.|+.-+ +.. ...++..+++ ..++..+.+.++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 45699999999999999999943 222 2223344554 2478889999999999875 44432 01111
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccC---cccHHHHHHHHHHHHHcC
Q 006904 135 YVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLG---AAGHNYMTWAAKMAVEMG 211 (626)
Q Consensus 135 ~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~---~~~~~Y~~~l~~~~~~~g 211 (626)
+-..|+.-+++....+++.++..+ .+ |.++|.+-- .++.. ..... ..-.+.++.+.+.|++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~-~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLAG-YDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEecC-ccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 112345556666667777777777 33 567665421 11100 00000 012255667777888778
Q ss_pred CCc
Q 006904 212 TGV 214 (626)
Q Consensus 212 ~~v 214 (626)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 764
No 52
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.60 E-value=1.8 Score=46.35 Aligned_cols=116 Identities=18% Similarity=0.253 Sum_probs=69.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecC-------ccCCC-------Cce-eeecccchHHHHHHHHHHcCcEEEEeeCce
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWN-------VHEPS-------PGN-YNFEGRYDLVRFIKTIQKAGLYAHLRIGPY 119 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn-------~hEp~-------~G~-ydF~G~~dL~~fl~la~~~GL~Vilr~GPy 119 (626)
.++.-++.|++++++|||+|-.-|-+. -.+|. +|. -.|+ -|..+|+.|++.||.|+.++ .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 778889999999999999997555432 12221 121 0133 79999999999999999876 21
Q ss_pred eeeecCC----CCCCcccc-ccCCeeeec----CC----hhHHHHHHHHHHHHHHHH-HhcccccccCCceEeeccc
Q 006904 120 VCAEWNF----GGFPVWLK-YVPGISFRT----DN----EPFKRAMQGFTEKIVNLM-KSENLFESQGGPIILSQIE 182 (626)
Q Consensus 120 i~aEw~~----GG~P~WL~-~~p~i~~Rt----~~----~~yl~~~~~~~~~i~~~l-~~~~l~~~~gGpII~~QIE 182 (626)
-..--.. -..|.|+. +.|+..... .+ .|-..+++.|+..++..+ +++ +|=++|++
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlD 161 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY--------DVDGIHLD 161 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC--------CCCeEEec
Confidence 1110011 12578875 456532322 11 123466777766655554 433 46677877
No 53
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=90.84 E-value=2 Score=49.80 Aligned_cols=82 Identities=24% Similarity=0.326 Sum_probs=56.7
Q ss_pred eEEEEEEEEeCCCCccccCCCccEEEEeecCcEEEEEECCeEEEEEEcCCCcceEEEEeee-eecCccceEEEEEeeccC
Q 006904 471 YLWYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKV-NLRAGRNKIALLSVAVGL 549 (626)
Q Consensus 471 YlWY~T~v~~~~~d~~~~~~~~~~L~v~s~gh~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v-~L~~G~N~islLS~tvGL 549 (626)
-.||. ++++.+.. ....|...++|--+ |+|||+-+|.-+-+.+. +.++-.|- =||++.|.|.++=..-|-
T Consensus 558 ~~w~k-~f~~p~g~------~~t~Ldm~g~GKG~-vwVNG~niGRYW~~~G~-Q~~yhvPr~~Lk~~~N~lvvfEee~~~ 628 (649)
T KOG0496|consen 558 LTWYK-TFDIPSGS------EPTALDMNGWGKGQ-VWVNGQNIGRYWPSFGP-QRTYHVPRSWLKPSGNLLVVFEEEGGD 628 (649)
T ss_pred eEEEE-EecCCCCC------CCeEEecCCCcceE-EEECCcccccccCCCCC-ceEEECcHHHhCcCCceEEEEEeccCC
Confidence 56888 67664322 23568888888775 89999999987654333 45554443 378899999998888777
Q ss_pred CCccccceeecce
Q 006904 550 PNVGGHYETWNTG 562 (626)
Q Consensus 550 ~n~Ga~~E~~~aG 562 (626)
|+ +..|..+...
T Consensus 629 p~-~i~~~~~~~~ 640 (649)
T KOG0496|consen 629 PN-GISFVTRPVL 640 (649)
T ss_pred Cc-cceEEEeEee
Confidence 66 5555555444
No 54
>PRK14706 glycogen branching enzyme; Provisional
Probab=90.56 E-value=3.3 Score=48.76 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=36.4
Q ss_pred HHHHHHCCCCEEEe-cee-------cCccCCC--CceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 63 IQKAKDGGLDVIET-YVF-------WNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 63 l~k~K~~GlN~V~t-yv~-------Wn~hEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+.-+|++|+|+|+. .|. |.+.-.- .=.=.|....||.+|++.|+++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45689999999995 331 3321100 000123445799999999999999999984
No 55
>smart00642 Aamy Alpha-amylase domain.
Probab=90.47 E-value=0.8 Score=44.55 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccC-------CCCcee-----eecccchHHHHHHHHHHcCcEEEEeeCceeee
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHE-------PSPGNY-----NFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hE-------p~~G~y-----dF~G~~dL~~fl~la~~~GL~Vilr~GPyi~a 122 (626)
-+-+.+.|.-+|++|+|+|..-=++...+ -.+..| .|....++.++++.|+++||.||+..=|-=++
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~ 96 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTS 96 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 34455666779999999998743322221 112222 45566899999999999999999997543333
No 56
>PRK14705 glycogen branching enzyme; Provisional
Probab=89.66 E-value=70 Score=40.71 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCCEEEe-cee-------cCccCC--CCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 61 DLIQKAKDGGLDVIET-YVF-------WNVHEP--SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 61 d~l~k~K~~GlN~V~t-yv~-------Wn~hEp--~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+.|.-+|++|+|+|+. +|+ |.+.-- ..=.=.|.+..|+.+|++.|+++||.|||..
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3468899999999996 452 432100 0001134556799999999999999999984
No 57
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=89.34 E-value=3.5 Score=42.52 Aligned_cols=131 Identities=18% Similarity=0.259 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEE-EeeCceeeeecCCCCCCcccccc
Q 006904 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 136 (626)
Q Consensus 58 ~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~~ 136 (626)
.|++.++.++++|++.|+..+. ..|+. ....+|+ ..++..+.+.++++||.+. +.++ +.-.+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~-~~~~~-~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~---- 79 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD-ESDER-LARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF---- 79 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-Ccccc-cccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc----
Confidence 5899999999999999999632 22221 1122333 3478999999999999875 3322 11000
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccccccc-ccCcccHHHHHHHHHHHHHcCCCc
Q 006904 137 PGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSK-LLGAAGHNYMTWAAKMAVEMGTGV 214 (626)
Q Consensus 137 p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~-~~~~~~~~Y~~~l~~~~~~~g~~v 214 (626)
.+.+.|+.-++...+.++++++..+ .| |.+.|.+---..+..... ..-..-.+.++.+.++|.+.|+.+
T Consensus 80 ---~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ---PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1223456656666667777777776 33 456664421000000000 000112356777888888888765
No 58
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=88.89 E-value=3.4 Score=42.76 Aligned_cols=97 Identities=12% Similarity=0.154 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHc-CcEEEEeeCceeeeecCCCCCCccccc
Q 006904 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKA-GLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~P~WL~~ 135 (626)
..|++.|+.+|++|++.|+.-+........+. ....++.++.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRP----LKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCC----CCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 67999999999999999998764322111111 1346899999999999 6665443 3331
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccc
Q 006904 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIE 182 (626)
Q Consensus 136 ~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIE 182 (626)
..+...++.-++.....+.+.++..+ .+ |-+.|.+..-
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g 107 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPG 107 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCC
Confidence 01222344444555555566666666 22 4456655443
No 59
>PRK09936 hypothetical protein; Provisional
Probab=88.86 E-value=5.4 Score=42.40 Aligned_cols=59 Identities=24% Similarity=0.407 Sum_probs=47.3
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeeccc-chHHHHHHHHHHcCcEEEEee
Q 006904 52 PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR-YDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 52 ~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~-~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+++++.|+++++.+++.|++++= |-|..--.. ||.|. -.|.+.++.|++.||.|++..
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG~~----~fg~~~g~La~~l~~A~~~Gl~v~vGL 92 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRYGDA----DFGGQRGWLAKRLAAAQQAGLKLVVGL 92 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeeccCC----CcccchHHHHHHHHHHHHcCCEEEEcc
Confidence 367999999999999999999874 445443111 78764 589999999999999998764
No 60
>PRK05402 glycogen branching enzyme; Provisional
Probab=88.31 E-value=5 Score=47.95 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=37.2
Q ss_pred HHHHHHCCCCEEEe-cee-------cCccCCCCce-----eeecccchHHHHHHHHHHcCcEEEEee
Q 006904 63 IQKAKDGGLDVIET-YVF-------WNVHEPSPGN-----YNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 63 l~k~K~~GlN~V~t-yv~-------Wn~hEp~~G~-----ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
|.-+|++|+|+|.. +|+ |.+ .+.. =.|.+..||.+|++.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY---~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGY---QPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCC---CcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999996 454 221 1111 124556799999999999999999984
No 61
>PRK12568 glycogen branching enzyme; Provisional
Probab=88.15 E-value=9.2 Score=45.68 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEe-cee-------cCcc-----CCCCceeeecccchHHHHHHHHHHcCcEEEEeeCc
Q 006904 61 DLIQKAKDGGLDVIET-YVF-------WNVH-----EPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (626)
Q Consensus 61 d~l~k~K~~GlN~V~t-yv~-------Wn~h-----Ep~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 118 (626)
+.|.-+|++|+|+|+. +|+ |.+. .|.+ .|....++.+|++.|+++||.|||..=|
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3467789999999996 443 4321 1111 3555679999999999999999998533
No 62
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=88.00 E-value=2.1 Score=46.05 Aligned_cols=112 Identities=17% Similarity=0.302 Sum_probs=72.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEece-------ecCccCCCCceeeec-c-cchHHHHHHHHHHcCcEEEEeeCceeeeecC
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYV-------FWNVHEPSPGNYNFE-G-RYDLVRFIKTIQKAGLYAHLRIGPYVCAEWN 125 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv-------~Wn~hEp~~G~ydF~-G-~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~ 125 (626)
.++.-+..|+.+|+.|+|+|-+-| .+.--.|..-+..-. . ..|+.++++.++++|||+|.|+=-|---..
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l- 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL- 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-
Confidence 456788999999999999998644 454333332222211 1 369999999999999999999732211000
Q ss_pred CCCCCccccc-cCCeeeecCC-----hhHHHHHHHHHHHHHHHHHhcc
Q 006904 126 FGGFPVWLKY-VPGISFRTDN-----EPFKRAMQGFTEKIVNLMKSEN 167 (626)
Q Consensus 126 ~GG~P~WL~~-~p~i~~Rt~~-----~~yl~~~~~~~~~i~~~l~~~~ 167 (626)
..--|.|-.+ ..+-..|..+ .||.+++.+|.-.|++..++.+
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 0114666552 2222233221 3688999999999999998654
No 63
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=87.92 E-value=0.48 Score=52.99 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=104.4
Q ss_pred EEECCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCcc-CCC---Cceeeec-ccchHHHHHHHHHHcC
Q 006904 35 LLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVH-EPS---PGNYNFE-GRYDLVRFIKTIQKAG 109 (626)
Q Consensus 35 ~~idG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~h-Ep~---~G~ydF~-G~~dL~~fl~la~~~G 109 (626)
|.++++++-.++..--++++..++-+++|+-|+..|+++++.. -+- |+- +|.-+-. +..-++.|++.|...+
T Consensus 4 F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~ 80 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLD 80 (587)
T ss_pred EEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccCc
Confidence 6677777777776666777777778889999999999999986 344 652 3322221 2347899999999999
Q ss_pred cEEEEeeCceeeeecCCCCC---Cccccc-cCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccc
Q 006904 110 LYAHLRIGPYVCAEWNFGGF---PVWLKY-VPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEY 185 (626)
Q Consensus 110 L~Vilr~GPyi~aEw~~GG~---P~WL~~-~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEy 185 (626)
|+|+++. |.+==..||. -.|.-. .|+-.+ .|+.++..-++|++.+++-.|. ...|.+|-+-||.
T Consensus 81 lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~Ne~ 148 (587)
T COG3934 81 LKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRNEP 148 (587)
T ss_pred ceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcCCc
Confidence 9998774 3332223443 234422 343212 2566666667777777775553 4578899999993
Q ss_pred cccccccCcccHHHHHHHHHHHHH
Q 006904 186 GAQSKLLGAAGHNYMTWAAKMAVE 209 (626)
Q Consensus 186 g~~~~~~~~~~~~Y~~~l~~~~~~ 209 (626)
=. .-...+..+++|+++|+--
T Consensus 149 lv---~~p~s~N~f~~w~~emy~y 169 (587)
T COG3934 149 LV---EAPISVNNFWDWSGEMYAY 169 (587)
T ss_pred cc---cccCChhHHHHHHHHHHHH
Confidence 22 1123578999999999843
No 64
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=87.12 E-value=1.4 Score=48.30 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=48.3
Q ss_pred EEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeee
Q 006904 45 FSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (626)
Q Consensus 45 ~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~a 122 (626)
++=++++...+.+.....|++|++.|+..|=| ++|.|+...=+. ...+..++++|++.||.|++.+.|=+..
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 45567777778999999999999999988766 689998543221 1378899999999999999999875443
No 65
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=86.80 E-value=16 Score=43.84 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEec-ee-------cCccCC---CCceeeecccchHHHHHHHHHHcCcEEEEeeCc
Q 006904 56 PDMWEDLIQKAKDGGLDVIETY-VF-------WNVHEP---SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~ty-v~-------Wn~hEp---~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 118 (626)
.+.|++.|..+|++|+|+|+.- |+ |.++-. .+ .-.|....+|.+||+.|+++||.|||..=|
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3558889999999999999962 32 433211 01 113555679999999999999999998533
No 66
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.20 E-value=6.2 Score=44.04 Aligned_cols=123 Identities=21% Similarity=0.303 Sum_probs=80.2
Q ss_pred CChhhHHHHHHHHHHCCCCEEEece-------------ecCccCCCCceee-ecccchHHHHHHHHHHcCcEEEEeeCce
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYV-------------FWNVHEPSPGNYN-FEGRYDLVRFIKTIQKAGLYAHLRIGPY 119 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv-------------~Wn~hEp~~G~yd-F~G~~dL~~fl~la~~~GL~Vilr~GPy 119 (626)
..+++-.+.|.+++++|+|||-.=| +|..-- ||..- =.|..-|...|++|++.||.|+.+.=||
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 3788889999999999999997322 243332 33321 1234478888999999999999998887
Q ss_pred eeeecCCCC---CCcccccc-CCeee-ecCC-------hhHHHHHHHHHHH-HHHHHHhcccccccCCceEeeccccccc
Q 006904 120 VCAEWNFGG---FPVWLKYV-PGISF-RTDN-------EPFKRAMQGFTEK-IVNLMKSENLFESQGGPIILSQIENEYG 186 (626)
Q Consensus 120 i~aEw~~GG---~P~WL~~~-p~i~~-Rt~~-------~~yl~~~~~~~~~-i~~~l~~~~l~~~~gGpII~~QIENEyg 186 (626)
..|--..-. -|.|+... |+... |.+. .++.-+++.|+.. +++.++++ .|-++|.+-=++
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 765422111 36677653 55333 3331 2456677777766 55666644 577889876655
No 67
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=85.03 E-value=1.6 Score=42.25 Aligned_cols=125 Identities=15% Similarity=0.089 Sum_probs=72.7
Q ss_pred HHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeee
Q 006904 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFR 142 (626)
Q Consensus 63 l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~R 142 (626)
|+.++++|++.|+...........+ ...++++.++++++||.+..--.+.. ... +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~------~~~-------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN------FWS-------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES------SSC-------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc------ccc-------cccccc
Confidence 6789999999999865533222221 34799999999999999653321110 001 100123
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccc--cccccccc-ccCcccHHHHHHHHHHHHHcCCCc
Q 006904 143 TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIE--NEYGAQSK-LLGAAGHNYMTWAAKMAVEMGTGV 214 (626)
Q Consensus 143 t~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIE--NEyg~~~~-~~~~~~~~Y~~~l~~~~~~~g~~v 214 (626)
+.+++ ++.....+.+.++..+ .+ |.+.+.+..= +....... ..-+.-.+.++.+.+.+.+.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 34444 7777778888888887 33 5667766643 11111000 000123456777888888888654
No 68
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=84.36 E-value=7.5 Score=40.24 Aligned_cols=125 Identities=15% Similarity=0.287 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEE-EeeCceeeeecCCCCCCcccccc
Q 006904 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 136 (626)
Q Consensus 58 ~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~~~ 136 (626)
.|++.++.++++|++.|+..+. ..++ ....++++ ..++.++.++++++||.|. +.++.. ..+|
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 5999999999999999998532 1111 01112333 2368899999999999875 332210 0011
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCc-------ccHHHHHHHHHHHHH
Q 006904 137 PGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGA-------AGHNYMTWAAKMAVE 209 (626)
Q Consensus 137 p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~-------~~~~Y~~~l~~~~~~ 209 (626)
+-+.++.-++.....+++.++..+ .+ |.+.|.+. +.. ..++. .-.+.++.|.++|++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 112455556666667777777777 33 56776542 110 00111 113456778888888
Q ss_pred cCCCc
Q 006904 210 MGTGV 214 (626)
Q Consensus 210 ~g~~v 214 (626)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 88754
No 69
>PRK01060 endonuclease IV; Provisional
Probab=84.07 E-value=11 Score=39.05 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=59.3
Q ss_pred HHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEE--EEeeCceeeeecCCCCCCcccccc
Q 006904 59 WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA--HLRIGPYVCAEWNFGGFPVWLKYV 136 (626)
Q Consensus 59 W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL~~~ 136 (626)
+++.|++++++|++.|+..+-- -+.-.++.++- .++.++-++++++||.+ +.--+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~-p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~h~~~~---------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGN-PQQWKRKPLEE---LNIEAFKAACEKYGISPEDILVHAPYL---------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCC-CCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEEecceE----------------
Confidence 8899999999999999986431 12111222222 26888999999999973 11133431
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006904 137 PGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (626)
Q Consensus 137 p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 180 (626)
+.+-+.|+..+++..+.+++.++..+ .+ |.++|-+.
T Consensus 74 --~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 --INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred --ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12234567777777777777777766 33 44555553
No 70
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=83.27 E-value=15 Score=37.35 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEE
Q 006904 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (626)
Q Consensus 58 ~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil 114 (626)
.+++.+++++++|++.|+....+ ..++..+.++++++||.+..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48899999999999999985321 13688899999999999864
No 71
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=83.25 E-value=16 Score=39.64 Aligned_cols=138 Identities=16% Similarity=0.283 Sum_probs=89.4
Q ss_pred CChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHH---HcCcEEEEeeCceeeeecCCCCCC
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ---KAGLYAHLRIGPYVCAEWNFGGFP 130 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~---~~GL~Vilr~GPyi~aEw~~GG~P 130 (626)
..|+..+.-++.||+.||+.--.|-.| |.|++-|++-++..- +.+|...|. |.+-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 578889999999999999999988766 457777877776654 334544444 22222211
Q ss_pred ccccccCCeeeecCChhHH--HHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHH
Q 006904 131 VWLKYVPGISFRTDNEPFK--RAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAV 208 (626)
Q Consensus 131 ~WL~~~p~i~~Rt~~~~yl--~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~ 208 (626)
.|-.....+.+- ..|. +..+++++.|++.+++..++--+|-||+++==-.+. +.-++.++.+++.|+
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 122222222111 1221 224677788889999877777788999987322111 245789999999999
Q ss_pred HcCCCcceeecC
Q 006904 209 EMGTGVPWVMCK 220 (626)
Q Consensus 209 ~~g~~vP~~~~~ 220 (626)
+.|+.-+.+...
T Consensus 186 ~~G~~giyii~~ 197 (345)
T PF14307_consen 186 EAGLPGIYIIAV 197 (345)
T ss_pred HcCCCceEEEEE
Confidence 999986655433
No 72
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=83.14 E-value=5 Score=50.68 Aligned_cols=111 Identities=17% Similarity=0.314 Sum_probs=68.5
Q ss_pred cEEECCEEeEEEEE---EeeCCCC--ChhhHHHHHHHHHHCCCCEEEe-cee-cC---ccCCCCceee----e----ccc
Q 006904 34 ALLINGQRRILFSG---SIHYPRS--TPDMWEDLIQKAKDGGLDVIET-YVF-WN---VHEPSPGNYN----F----EGR 95 (626)
Q Consensus 34 ~~~idG~~~~l~sG---~iHy~R~--~~~~W~d~l~k~K~~GlN~V~t-yv~-Wn---~hEp~~G~yd----F----~G~ 95 (626)
.|.|||++.+.+.+ +-..++. +-+.|++.|+.+|+.|+|+|.. +++ =. ..=...+++. | .|.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 35556644444333 2224443 6688999999999999999985 454 11 1111123332 3 256
Q ss_pred chHHHHHHHHHHc-CcEEEEeeCceeeeecCCCCC-CccccccCCeeeecCChhHHH
Q 006904 96 YDLVRFIKTIQKA-GLYAHLRIGPYVCAEWNFGGF-PVWLKYVPGISFRTDNEPFKR 150 (626)
Q Consensus 96 ~dL~~fl~la~~~-GL~Vilr~GPyi~aEw~~GG~-P~WL~~~p~i~~Rt~~~~yl~ 150 (626)
.|+.++++.+++. ||.+|+.. =||.-+. =.|+.++|+.-.-..+.++|+
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~ 234 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI------VFNHTANNSPWLLEHPEAAYNCITSPHLR 234 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe------eecccccCCHHHHhChHhhcCCCCCchhh
Confidence 7899999999986 99999985 1444443 348887777544444444443
No 73
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=82.71 E-value=2.2 Score=48.28 Aligned_cols=61 Identities=8% Similarity=0.250 Sum_probs=42.6
Q ss_pred hhhHHH---HHHHHHHCCCCEEEe-ceecCc-----cCCCCce-e-------------eecccchHHHHHHHHHHcCcEE
Q 006904 56 PDMWED---LIQKAKDGGLDVIET-YVFWNV-----HEPSPGN-Y-------------NFEGRYDLVRFIKTIQKAGLYA 112 (626)
Q Consensus 56 ~~~W~d---~l~k~K~~GlN~V~t-yv~Wn~-----hEp~~G~-y-------------dF~G~~dL~~fl~la~~~GL~V 112 (626)
.+.|.. .|.-+|++|+++|-+ +++-+. |--.+-. | .|....||.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 456764 455679999999986 455432 2222211 2 2445679999999999999999
Q ss_pred EEee
Q 006904 113 HLRI 116 (626)
Q Consensus 113 ilr~ 116 (626)
|+..
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9985
No 74
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=81.91 E-value=3.5 Score=43.70 Aligned_cols=69 Identities=12% Similarity=0.157 Sum_probs=49.6
Q ss_pred CChhhHHHHHHHHHHCCCCEEEeceecCccCCC-Cceeeeccc--chHHHHHHHHHHcCcEEEEeeCceeee
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~-~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~a 122 (626)
.+.+..++.++++|+.||.+=...+-..++... .+.|.|+-. -|..++++.++++|+++++..=|+|+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 367788999999999996654444433333322 235555532 289999999999999999999888764
No 75
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=81.76 E-value=16 Score=40.32 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEec----eecCccCCCCceeeecccchHHHHHHHHHHcCcEEEE-eeCceeeeecCCCCCC
Q 006904 56 PDMWEDLIQKAKDGGLDVIETY----VFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL-RIGPYVCAEWNFGGFP 130 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~ty----v~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil-r~GPyi~aEw~~GG~P 130 (626)
+....+++++++++|++.|+.. ++|..-+.++ ..++.++-++++++||.|.. -++-+.+ |
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~v~~nl~~~--------~ 95 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPMVTTNLFSH--------P 95 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEEeeccccCC--------c
Confidence 3456689999999999999964 1221111110 23578899999999999753 3321111 1
Q ss_pred ccccccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 131 VWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 131 ~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
.|.. + .+-+.|+..+++.-+.+++.++.-+
T Consensus 96 ~~~~---g-~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 96 VFKD---G-GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred cccC---C-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1211 1 1334467666666566666666666
No 76
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=81.52 E-value=1.6 Score=44.78 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCEEEeceecCccC----CCCcee-e----ecccchHHHHHHHHHHcCcEEEEee
Q 006904 60 EDLIQKAKDGGLDVIETYVFWNVHE----PSPGNY-N----FEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~tyv~Wn~hE----p~~G~y-d----F~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+.|.-+|++|+|+|..-=++...+ -.+-.| + |....++.++++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 3567789999999999753333221 111111 1 3345799999999999999999885
No 77
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=79.84 E-value=29 Score=38.58 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=60.8
Q ss_pred eeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCC----ceeeeccc---chHHHHHHHHHHcCcEEEEeeCceee
Q 006904 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSP----GNYNFEGR---YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (626)
Q Consensus 49 iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~----G~ydF~G~---~dL~~fl~la~~~GL~Vilr~GPyi~ 121 (626)
..|+..+.+.-.+.++++++.|++.+.+---|....... |.+.-+-. .-|..+++.+++.||..=|+..|.++
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 346677888888999999999999988887887653222 43332211 14999999999999999999988776
Q ss_pred eec--CCCCCCccccccCC
Q 006904 122 AEW--NFGGFPVWLKYVPG 138 (626)
Q Consensus 122 aEw--~~GG~P~WL~~~p~ 138 (626)
++= -+-..|.|+...++
T Consensus 130 ~~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTT
T ss_pred cchhHHHHhCccceeecCC
Confidence 431 12347999987554
No 78
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.20 E-value=27 Score=35.90 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccC
Q 006904 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVP 137 (626)
Q Consensus 58 ~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p 137 (626)
.+++.|+.++++|++.|+..... .|+-.+ +++ ..++.++-++++++||.|.. .+|. .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc---
Confidence 48999999999999999983211 011111 121 23688899999999998753 2221 123333221
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc-cc-ccccccCcccHHHHHHHHHHHHHcCCCc
Q 006904 138 GISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENE-YG-AQSKLLGAAGHNYMTWAAKMAVEMGTGV 214 (626)
Q Consensus 138 ~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENE-yg-~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 214 (626)
..++.-+++..+.+++.++..+ .+ |.+.|.+-.-.. +. .....+ ..-.+.++.|.+.|.+.|+.+
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234444555555566556555 22 445554421110 00 000000 122346778888888887654
No 79
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=79.14 E-value=4.2 Score=39.64 Aligned_cols=54 Identities=24% Similarity=0.352 Sum_probs=33.4
Q ss_pred CccEEEEeecCcEEEEEECCeEEEEEE---c--CCCc--ceEEEEeeeeecCccceEEEEEe
Q 006904 491 ELPTLIVQSTGHALHIFINGQLSGSAF---G--TREA--RRFMYTGKVNLRAGRNKIALLSV 545 (626)
Q Consensus 491 ~~~~L~v~s~gh~lhvFVNg~~~Gs~~---g--~~~~--~~~~~~~~v~L~~G~N~islLS~ 545 (626)
.+..|+|...| ...+||||+.||... | +..+ .--+++..--|++|.|.|+++-.
T Consensus 4 ~~A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg 64 (172)
T PF08531_consen 4 RSARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLG 64 (172)
T ss_dssp ---EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEE
T ss_pred eEEEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEe
Confidence 45789998888 557999999999865 2 1111 12346655568999999988754
No 80
>PLN02960 alpha-amylase
Probab=78.83 E-value=63 Score=39.58 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCEEEe-cee-------cCccCCCC--ceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 60 EDLIQKAKDGGLDVIET-YVF-------WNVHEPSP--GNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~t-yv~-------Wn~hEp~~--G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
++.|.-+|++|+|+|+. .|+ |.+.-.-- =.-.|....+|.+|++.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34688899999999996 453 43221100 00124456799999999999999999985
No 81
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=78.39 E-value=30 Score=35.41 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=37.7
Q ss_pred eeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEE
Q 006904 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (626)
Q Consensus 49 iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil 114 (626)
+.|-+.+ .++.|++++++|++.|+... |. ..++..+.++++++||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 4454554 67889999999999999831 11 13799999999999999854
No 82
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=78.21 E-value=47 Score=38.66 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=80.4
Q ss_pred ChhhHHHHHHHHHHCCCCEEEec-eecCccCCCCcee--------eeccc----chHHHHHHHHHHcCcEEEEeeCceee
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETY-VFWNVHEPSPGNY--------NFEGR----YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~ty-v~Wn~hEp~~G~y--------dF~G~----~dL~~fl~la~~~GL~Vilr~GPyi~ 121 (626)
.++.=++.|..|++..||.|+.| ..|.+|.|.|+.= |+.++ .-+...|+.|++.|+.++.=--=|.+
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa 195 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAA 195 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcc
Confidence 34567889999999999999999 8899999987543 23332 35789999999999999855322222
Q ss_pred eec--CCCCCCccccc-cCCe------ee--------e---cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecc
Q 006904 122 AEW--NFGGFPVWLKY-VPGI------SF--------R---TDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQI 181 (626)
Q Consensus 122 aEw--~~GG~P~WL~~-~p~i------~~--------R---t~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 181 (626)
-+. ..|=.|.|... .++- .+ . ..|+.|+++...=+.+.++.+.=.+.+.++=|+.--+
T Consensus 196 ~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~-- 273 (559)
T PF13199_consen 196 NNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTV-- 273 (559)
T ss_dssp ETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEE--
T ss_pred ccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCcc--
Confidence 221 24557888753 2220 11 1 1245566655444444444443222333333433322
Q ss_pred cccccccccccCcccHHHHHHHHHHHHHcCCCcceeecC
Q 006904 182 ENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCK 220 (626)
Q Consensus 182 ENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 220 (626)
.+.-|.... .-...|...|.++-..+ -+.+++|+.
T Consensus 274 ~d~~G~~i~---~l~~~y~~Fi~~~K~~~-~~k~lv~N~ 308 (559)
T PF13199_consen 274 YDYDGNKIY---DLSDGYASFINAMKEAL-PDKYLVFNA 308 (559)
T ss_dssp GGTT---GG---ECHHHHHHHHHHHHHHS-TTSEEEEB-
T ss_pred ccCCCCCch---hhHHHHHHHHHHHHHhC-CCCceeeec
Confidence 222222100 12457777777776554 566777754
No 83
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=76.61 E-value=8.3 Score=41.00 Aligned_cols=68 Identities=19% Similarity=0.372 Sum_probs=53.2
Q ss_pred CCCChhhHHHHHHHHHHCCC--CEEEeceecCccCCCCceeeeccc--chHHHHHHHHHHcCcEEEEeeCceeee
Q 006904 52 PRSTPDMWEDLIQKAKDGGL--DVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (626)
Q Consensus 52 ~R~~~~~W~d~l~k~K~~Gl--N~V~tyv~Wn~hEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~a 122 (626)
...+.+.-.+.++++++.|| ++|.+-..|. ..-|.|.|+-. -|..++++..++.|+++++.+=|+|+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 34578888999999999995 5666666663 34566666532 389999999999999999999888864
No 84
>PRK12313 glycogen branching enzyme; Provisional
Probab=73.14 E-value=6.3 Score=46.30 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=38.5
Q ss_pred HHHHHHHCCCCEEEe-cee-------cCccCCC--CceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 62 LIQKAKDGGLDVIET-YVF-------WNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 62 ~l~k~K~~GlN~V~t-yv~-------Wn~hEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.|.-+|++|+|+|.. +|+ |.+.-.. .=.-.|.+..||.+|++.|+++||.|||..
T Consensus 176 ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 176 LIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 358889999999995 453 3211000 000135567799999999999999999984
No 85
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=72.64 E-value=6.5 Score=45.37 Aligned_cols=53 Identities=25% Similarity=0.397 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCCEEEe-cee-------cCcc-----CCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 61 DLIQKAKDGGLDVIET-YVF-------WNVH-----EPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 61 d~l~k~K~~GlN~V~t-yv~-------Wn~h-----Ep~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+.|.-+|++|+|+|.. +|+ |.+. .|.+ .|.+..+|.+|++.|+++||.|||..
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4577889999999996 442 3322 1111 24556799999999999999999984
No 86
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=72.46 E-value=14 Score=29.84 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEE
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil 114 (626)
.|..-.+.++-+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 11 ~pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 11 KPGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CCChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 35567788999999999999999732 333 58877766 5778999999999988754
No 87
>PRK09989 hypothetical protein; Provisional
Probab=72.25 E-value=41 Score=34.40 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEE
Q 006904 59 WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHL 114 (626)
Q Consensus 59 W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vil 114 (626)
.++.|++++++|++.|+...+|. .+...+.++++++||.+..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 67999999999999999843321 2467788889999999874
No 88
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=71.86 E-value=17 Score=38.41 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=47.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCC--------CCceeeeccc--chHHHHHHHHHHcCcEEEEeeCce
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP--------SPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPY 119 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp--------~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPy 119 (626)
+.+.-++.++++++.||-+=.+++-..+|.- .-+.|.|+-. -|..++++..++.|+++++.+=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 6777899999999999876555554333321 2346666643 399999999999999999887554
No 89
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=71.66 E-value=5.9 Score=32.49 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=28.8
Q ss_pred EEEEeecCcEEEEEECCeEEEEEEcCCCcceEEEEeeeeecCccceEEEE
Q 006904 494 TLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALL 543 (626)
Q Consensus 494 ~L~v~s~gh~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v~L~~G~N~islL 543 (626)
.|.|.|.=.-..|||||+++|... ..+. .|..|.+.|.+=
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v~ 42 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTVE 42 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEEE
Confidence 577888866788999999999432 2232 277888888664
No 90
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=71.47 E-value=30 Score=35.94 Aligned_cols=124 Identities=23% Similarity=0.439 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCCC--ceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccc
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSP--GNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWL 133 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~--G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 133 (626)
.-.|+++|+-+|++||+.|+.-| -|.-+ -+-||+. .-...+.+++++.|+ |+ |-+| |
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSv----DEsDeRLaRLDWs~-~er~~l~~ai~etgv----~i-pSmC-----------l 75 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSV----DESDERLARLDWSK-EERLALVNAIQETGV----RI-PSMC-----------L 75 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEec----cchHHHHHhcCCCH-HHHHHHHHHHHHhCC----Cc-cchh-----------h
Confidence 34599999999999999999854 45433 3566762 234566888999998 44 3344 1
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCc----ccHHH---HHHHHHH
Q 006904 134 KYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGA----AGHNY---MTWAAKM 206 (626)
Q Consensus 134 ~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~----~~~~Y---~~~l~~~ 206 (626)
..+...-+-+.|+.-++..-..+.+-+..-. +| .|--+|+- -|+- .|.+ +.+.| |+|..++
T Consensus 76 SaHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQLA-GYDV---YYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 76 SAHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQLA-GYDV---YYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred hhhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEeec-ccee---eeccCCHHHHHHHHHHHHHHHHH
Confidence 1111112557899888887777777555544 33 35556762 1222 2332 22333 5667777
Q ss_pred HHHcCC
Q 006904 207 AVEMGT 212 (626)
Q Consensus 207 ~~~~g~ 212 (626)
|.+..+
T Consensus 144 A~~aqV 149 (287)
T COG3623 144 AARAQV 149 (287)
T ss_pred HHhhcc
Confidence 766554
No 91
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=71.39 E-value=66 Score=33.38 Aligned_cols=65 Identities=14% Similarity=0.263 Sum_probs=49.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCcee--eecc--cchHHHHHHHHHHcCcEEEEeeCcee
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNY--NFEG--RYDLVRFIKTIQKAGLYAHLRIGPYV 120 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~y--dF~G--~~dL~~fl~la~~~GL~Vilr~GPyi 120 (626)
..++..+.++++++.||.+=.+.+-+.+.+. .+.| +|+. --|..++++..+++|++|++.+=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 7778899999999999886665555554443 3555 4432 23899999999999999999998877
No 92
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=70.76 E-value=7.3 Score=45.51 Aligned_cols=55 Identities=20% Similarity=0.438 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCCEEEe-cee---------------cCccC-----CCCceee----ec--ccchHHHHHHHHHHcCcEEE
Q 006904 61 DLIQKAKDGGLDVIET-YVF---------------WNVHE-----PSPGNYN----FE--GRYDLVRFIKTIQKAGLYAH 113 (626)
Q Consensus 61 d~l~k~K~~GlN~V~t-yv~---------------Wn~hE-----p~~G~yd----F~--G~~dL~~fl~la~~~GL~Vi 113 (626)
+.|.-+|++|+|+|+. +|+ |.+.- |. +.|- +- ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 3588999999999996 454 33221 10 0111 10 12689999999999999999
Q ss_pred Eee
Q 006904 114 LRI 116 (626)
Q Consensus 114 lr~ 116 (626)
|..
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 985
No 93
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=70.75 E-value=5.8 Score=41.22 Aligned_cols=52 Identities=21% Similarity=0.484 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
+...++.|+.+|+.||++|++ ..|..+.+ ..+..++|+.|+++|+.|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 566788999999999999987 44555444 34778999999999999999987
No 94
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=70.55 E-value=9.9 Score=40.71 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=49.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCc--eeeecccc--hHHHHHHHHHHcCcEEEEeeCceee
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPG--NYNFEGRY--DLVRFIKTIQKAGLYAHLRIGPYVC 121 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G--~ydF~G~~--dL~~fl~la~~~GL~Vilr~GPyi~ 121 (626)
+.++-++.++++++.||.+=.+.+-|.+.. ..+ .|.|+-.+ |..++|+.++++|++|++.+=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 667778999999999887655555555443 244 67666433 8999999999999999998867663
No 95
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=69.33 E-value=21 Score=39.59 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=42.9
Q ss_pred CChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+.+.|+++|+.+|++|||....=+- .+..+.-+ .|...++.|++.|+++.|-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~~---~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQPD---QLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccHH---HHHHHHHHHHhcCCEEEEEe
Confidence 38899999999999999998887543 22223333 78888999999999998886
No 96
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=69.22 E-value=7.3 Score=44.91 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEe-ceecCccCCCCceee----------ecccchHHHHHHHHHHcCcEEEEee
Q 006904 56 PDMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPGNYN----------FEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~t-yv~Wn~hEp~~G~yd----------F~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
-.-+.+.|.-+|++|+++|-. +++-+-.. ..-|+ |....||.++++.|+++||+|||..
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 344667888999999999986 45432111 01121 4456799999999999999999985
No 97
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=69.18 E-value=58 Score=29.18 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=47.4
Q ss_pred CcceEEEEEEEEeCCCCccccCCCccEEEEeecCc--EEEEEECC---eEEEEEEc----CCCcceEEEEeeeeecCccc
Q 006904 468 ASDYLWYITSVDIGSSESFLHGGELPTLIVQSTGH--ALHIFING---QLSGSAFG----TREARRFMYTGKVNLRAGRN 538 (626)
Q Consensus 468 ~sDYlWY~T~v~~~~~d~~~~~~~~~~L~v~s~gh--~lhvFVNg---~~~Gs~~g----~~~~~~~~~~~~v~L~~G~N 538 (626)
.-||+=|.- |++..... -...+++.+.+- .+.++||| +.+++..- ..... -+.+.+|+|..|+|
T Consensus 30 ~G~~~~~~~-Vd~~~~g~-----y~~~~~~a~~~~~~~~~l~id~~~g~~~~~~~~~~tg~w~~~-~~~~~~v~l~~G~h 102 (125)
T PF03422_consen 30 NGDWIEYNN-VDVPEAGT-----YTLTIRYANGGGGGTIELRIDGPDGTLIGTVSLPPTGGWDTW-QTVSVSVKLPAGKH 102 (125)
T ss_dssp TTTEEEEEE-EEESSSEE-----EEEEEEEEESSSSEEEEEEETTTTSEEEEEEEEE-ESSTTEE-EEEEEEEEEESEEE
T ss_pred CCCEEEEEE-EeeCCCce-----EEEEEEEECCCCCcEEEEEECCCCCcEEEEEEEcCCCCcccc-EEEEEEEeeCCCee
Confidence 456766652 66643321 123567766633 89999999 89988753 33221 34667899999999
Q ss_pred eEEEEEee
Q 006904 539 KIALLSVA 546 (626)
Q Consensus 539 ~islLS~t 546 (626)
.|.|-+..
T Consensus 103 ~i~l~~~~ 110 (125)
T PF03422_consen 103 TIYLVFNG 110 (125)
T ss_dssp EEEEEESS
T ss_pred EEEEEEEC
Confidence 99988754
No 98
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=68.91 E-value=10 Score=43.88 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=40.7
Q ss_pred HHHHHHHHHHCCCCEEEe-ceecCccCCCC-cee----------eecccchHHHHHHHHHHcCcEEEEee
Q 006904 59 WEDLIQKAKDGGLDVIET-YVFWNVHEPSP-GNY----------NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 59 W~d~l~k~K~~GlN~V~t-yv~Wn~hEp~~-G~y----------dF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+.+.|.-+|++|+++|-. +++-. |.. .-| +|....||.++++.|+++||+|||..
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 567788899999999986 45422 111 112 24456799999999999999999885
No 99
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=68.07 E-value=32 Score=36.20 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=61.8
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeec--ccchHHHHHH
Q 006904 26 CSVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE--GRYDLVRFIK 103 (626)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~--G~~dL~~fl~ 103 (626)
..|.. +.+.+.+.|++++.|=.-. -+++.-.+.-+++|++|+.+++.|.|=+-..| +.|. |...+..+-+
T Consensus 14 ~~~~~--~~~~~g~~~~~~iaGPCsi--e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l~~ 85 (266)
T PRK13398 14 TIVKV--GDVVIGGEEKIIIAGPCAV--ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKILKE 85 (266)
T ss_pred cEEEE--CCEEEcCCCEEEEEeCCcC--CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHHHH
Confidence 34444 3367777788888883322 15778888999999999999999988744333 3555 5678899999
Q ss_pred HHHHcCcEEEEee
Q 006904 104 TIQKAGLYAHLRI 116 (626)
Q Consensus 104 la~~~GL~Vilr~ 116 (626)
.|++.||.++-.|
T Consensus 86 ~~~~~Gl~~~te~ 98 (266)
T PRK13398 86 VGDKYNLPVVTEV 98 (266)
T ss_pred HHHHcCCCEEEee
Confidence 9999999988765
No 100
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=67.73 E-value=2.5 Score=43.12 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=44.2
Q ss_pred HHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEe
Q 006904 60 EDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 115 (626)
-...+.+.+.|.+.|.+.++|..-.+..-.+... ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4578899999999999999997766655444555 8999999999999999999
No 101
>PRK09505 malS alpha-amylase; Reviewed
Probab=67.09 E-value=10 Score=45.00 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCEEEe-ceecCccCCC----Cc------------------eeeecccchHHHHHHHHHHcCcEEEEe
Q 006904 59 WEDLIQKAKDGGLDVIET-YVFWNVHEPS----PG------------------NYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 59 W~d~l~k~K~~GlN~V~t-yv~Wn~hEp~----~G------------------~ydF~G~~dL~~fl~la~~~GL~Vilr 115 (626)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....++.++++.|+++||+|||.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 456778889999999985 5654433221 11 112445679999999999999999998
Q ss_pred e
Q 006904 116 I 116 (626)
Q Consensus 116 ~ 116 (626)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 102
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=66.46 E-value=26 Score=41.55 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHCCCCEEE---------------eceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceee
Q 006904 57 DMWEDLIQKAKDGGLDVIE---------------TYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVC 121 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~---------------tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~ 121 (626)
+.-...|+.+|+.|+|+|- .|++| -|=| |+-|.= |=. ...++.+.|+.|..+..||-.
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~f---~~~-aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADLF---NRV-AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCCc---CHH-HHHHHHhhCCEEEEeccceee
Confidence 4577899999999999985 46677 3333 332211 111 345689999999999999853
Q ss_pred e---------ecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccc
Q 006904 122 A---------EWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEY 185 (626)
Q Consensus 122 a---------Ew~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEy 185 (626)
. +++..+-|.-.+ |+-..| -.+|..+++++++.|.+-++.+ .+|=++|.+-+-
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 2 222122222221 111122 2467788999999999888853 256666665553
No 103
>PRK10785 maltodextrin glucosidase; Provisional
Probab=66.38 E-value=11 Score=44.03 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCEEEe-ceecC--ccCCCCcee-----eecccchHHHHHHHHHHcCcEEEEee
Q 006904 60 EDLIQKAKDGGLDVIET-YVFWN--VHEPSPGNY-----NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~t-yv~Wn--~hEp~~G~y-----dF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+.|.-+|++|+|+|-. +||=+ .|---...| .|.+..||.+|++.|++.||+|||..
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45677789999999996 56632 121111111 24556799999999999999999874
No 104
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=66.00 E-value=45 Score=34.21 Aligned_cols=101 Identities=11% Similarity=0.139 Sum_probs=62.7
Q ss_pred EEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCcee-eecccchHHHHHHHHHHcCcEEEEeeCceeeeecC
Q 006904 47 GSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNY-NFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWN 125 (626)
Q Consensus 47 G~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~y-dF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~ 125 (626)
|..+..+.+ -.+.|+.+.+.|++.|+.. ..+|..-.- +++ ..++.++.++++++||.+.+ -+||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~-h~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSV-HAPYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEE-ECCce-----
Confidence 444444444 3378999999999999984 333322100 122 23688899999999998654 23431
Q ss_pred CCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 006904 126 FGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ 180 (626)
Q Consensus 126 ~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 180 (626)
+.+.+.++..+++..+.+.+.++..+ .+ |.++|.+.
T Consensus 69 -------------~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -------------INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -------------ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12335567777777777777777766 33 55655543
No 105
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=65.65 E-value=14 Score=40.01 Aligned_cols=74 Identities=12% Similarity=0.227 Sum_probs=55.2
Q ss_pred eeCCCC---ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccc--hH--HHHHHHHHHcCcEEEEeeCceee
Q 006904 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRY--DL--VRFIKTIQKAGLYAHLRIGPYVC 121 (626)
Q Consensus 49 iHy~R~---~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~--dL--~~fl~la~~~GL~Vilr~GPyi~ 121 (626)
+|..|. +.+..++.++++++.||.+=.+.+-+.+++. .+.|.|+..+ |. .++++..++.|++|++.+=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 444453 6777899999999999876555554444432 4667766532 77 99999999999999999999987
Q ss_pred ee
Q 006904 122 AE 123 (626)
Q Consensus 122 aE 123 (626)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 106
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=65.52 E-value=15 Score=39.66 Aligned_cols=68 Identities=4% Similarity=0.051 Sum_probs=52.2
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeeccc--chHHHHHHHHHHcCcEEEEeeCceeeee
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~aE 123 (626)
+.++-++.++++++.||.+=.+.+-+.+. ...+.|+|+-. -|..++++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 67778899999999998765555443322 34566777643 2899999999999999999999999854
No 107
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=65.21 E-value=71 Score=34.62 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=28.5
Q ss_pred EecCcEEECCEEeEEEEEEeeCCCCChhhHHHHH-HHHHHCCCCEEEe
Q 006904 30 YDRKALLINGQRRILFSGSIHYPRSTPDMWEDLI-QKAKDGGLDVIET 76 (626)
Q Consensus 30 ~d~~~~~idG~~~~l~sG~iHy~R~~~~~W~d~l-~k~K~~GlN~V~t 76 (626)
-|.|++.|||||++++=..-.. ......-+.+ +.+|++|+.-|-.
T Consensus 149 ~D~rYikVdGKPv~~Iy~p~~~--pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 149 KDPRYIKVDGKPVFLIYRPGDI--PDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCCceeECCEEEEEEECcccc--cCHHHHHHHHHHHHHHcCCCceEE
Confidence 3789999999999987433221 1222233333 4678899995554
No 108
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=65.11 E-value=55 Score=36.30 Aligned_cols=136 Identities=15% Similarity=0.200 Sum_probs=70.7
Q ss_pred HHCCCCEEEece---------------ecCcc---CCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCC
Q 006904 67 KDGGLDVIETYV---------------FWNVH---EPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGG 128 (626)
Q Consensus 67 K~~GlN~V~tyv---------------~Wn~h---Ep~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG 128 (626)
|-+||+.+|.-| .|-.. .+..|.|||+....=+.|++.|++.|+..++-.- =-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cC
Confidence 568888888544 13222 2457899999877778899999999999877541 13
Q ss_pred CCccccccCC--------eeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccC-------
Q 006904 129 FPVWLKYVPG--------ISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLG------- 193 (626)
Q Consensus 129 ~P~WL~~~p~--------i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~------- 193 (626)
.|.|++..-. ..+| +...+.-..|+..++++++++++ +|=-+-.=||.... +..+
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk---~d~y~~FA~YLa~Vv~~~~~~GI------~f~~IsP~NEP~~~-W~~~~QEG~~~ 197 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLK---PDNYDAFADYLADVVKHYKKWGI------NFDYISPFNEPQWN-WAGGSQEGCHF 197 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS----TT-HHHHHHHHHHHHHHHHCTT--------EEEEE--S-TTS--GG--SS-B---
T ss_pred CCHHHhcCCCCCCCCccccccC---hhHHHHHHHHHHHHHHHHHhcCC------ccceeCCcCCCCCC-CCCCCcCCCCC
Confidence 6888875211 0122 34556666777788888865443 55555666998642 2111
Q ss_pred --cccHHHHHHHHHHHHHcCCCcceeecCC
Q 006904 194 --AAGHNYMTWAAKMAVEMGTGVPWVMCKE 221 (626)
Q Consensus 194 --~~~~~Y~~~l~~~~~~~g~~vP~~~~~~ 221 (626)
+...+.++.|....++.|+..-+..|+.
T Consensus 198 ~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 198 TNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp -HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 1235677888888888899876555543
No 109
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=65.09 E-value=13 Score=42.82 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHCCCCEEEe-ceecC---ccCCCCcee-----eecccchHHHHHHHHHHcCcEEEEee
Q 006904 56 PDMWEDLIQKAKDGGLDVIET-YVFWN---VHEPSPGNY-----NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~t-yv~Wn---~hEp~~G~y-----dF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
-.-+.+.|.-+|++|+|+|-. +||=+ .|--.+-.| .|.+..|+.++++.|+++||+|||..
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 344677888999999999986 45411 010000011 14456799999999999999999973
No 110
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=64.92 E-value=13 Score=42.48 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHCCCCEEEeceecCccCCC---CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCcccc
Q 006904 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPS---PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLK 134 (626)
Q Consensus 58 ~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~---~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~ 134 (626)
.++++++.||++|++.-|.-+.|...=|. .+..+-.|..--..+|+...++||..++-. | .=.+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f------HwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F------HWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e------cCCCCHHHH
Confidence 57899999999999999999999988775 256788888888889999999999866554 1 235788887
Q ss_pred c-cCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 135 Y-VPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 135 ~-~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
+ .-+-.-+.-=+.|+++++-.+++..+++|
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK 194 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK 194 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce
Confidence 5 34421122235688888888888888887
No 111
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=64.80 E-value=17 Score=38.97 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=49.5
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccC--C---CCceeeeccc--chHHHHHHHHHHcCcEEEEeeCceee
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHE--P---SPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hE--p---~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~ 121 (626)
..+...+.++++++.||-+=.+.+-+.++. . .-|.|.|+-. -|..++++..+++|++|++.+=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 567789999999999987555554433333 1 2346666533 38999999999999999999878775
No 112
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=64.54 E-value=49 Score=31.72 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHCCCCEEEecee--cCccCC----CCceeeecccchHHHHHHHHHHcCcEEE-EeeCceeeeecCCCCC
Q 006904 57 DMWEDLIQKAKDGGLDVIETYVF--WNVHEP----SPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGF 129 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~tyv~--Wn~hEp----~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~ 129 (626)
+.-++..+.+++.|+.++....+ |..... .+.+ .-.....+.+.+++|++.|...+ +.+|. .
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------~ 95 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------Y 95 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT----------E
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc----------c
Confidence 45667788889999997775544 433211 1111 22234589999999999999865 44442 0
Q ss_pred CccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccccc
Q 006904 130 PVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQ 188 (626)
Q Consensus 130 P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~ 188 (626)
+.+ +. ...+.-++.+.+.+++++++.++++ +-+-+||..+..
T Consensus 96 ~~~----~~----~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 96 PSG----PE----DDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp SSS----TT----SSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred ccc----cC----CCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 000 11 1224566777888899999888543 345688888763
No 113
>PRK09875 putative hydrolase; Provisional
Probab=64.15 E-value=42 Score=35.79 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=59.2
Q ss_pred eEEEecCcEEECCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHH
Q 006904 27 SVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ 106 (626)
Q Consensus 27 ~v~~d~~~~~idG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~ 106 (626)
.+|+-+-.+.++..+ +.+......-..+.-.+.|+.+|++|.++|- |..+- .-.||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~---~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiV--------d~T~~----g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSG---FKNNVDCRLDQYAFICQEMNDLMTRGVRNVI--------EMTNR----YMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChh---hcCCcccccccHHHHHHHHHHHHHhCCCeEE--------ecCCC----ccCcCHHHHHHHHH
Confidence 466777777776632 1111222122455566788899999999873 22221 12479999999999
Q ss_pred HcCcEEEEeeCceeeeecCCCCCCccccc
Q 006904 107 KAGLYAHLRIGPYVCAEWNFGGFPVWLKY 135 (626)
Q Consensus 107 ~~GL~Vilr~GPyi~aEw~~GG~P~WL~~ 135 (626)
+-|+.+|.-.|-|... -.|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~-----~~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDA-----FFPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCc-----cCCHHHhc
Confidence 9999999999988532 26788763
No 114
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=61.85 E-value=33 Score=36.32 Aligned_cols=109 Identities=14% Similarity=0.213 Sum_probs=68.3
Q ss_pred EEEEEEeeCCCCC---hhhH-HHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCc
Q 006904 43 ILFSGSIHYPRST---PDMW-EDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (626)
Q Consensus 43 ~l~sG~iHy~R~~---~~~W-~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 118 (626)
+-+++..|+...| .... -++|++-.++|.+.+-|=.+ ||.+ .+.+|++.|++.|+.+=+.||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 5678888875532 2112 13444333699999988443 4555 7899999999997765444444
Q ss_pred eee---------eecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006904 119 YVC---------AEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (626)
Q Consensus 119 yi~---------aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~ 165 (626)
.-+ .||..--+|.|+.+.=. ....+++..++.--++..++++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 57776678999975210 12233455566677777888888774
No 115
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=61.82 E-value=17 Score=37.77 Aligned_cols=53 Identities=13% Similarity=0.362 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCc
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 118 (626)
....++.++.+|+.||++|++ ..|..+++ ..+..++|+.++++||.|+--.|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 356778888999999999987 55655555 347889999999999999988874
No 116
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=61.75 E-value=22 Score=38.01 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCC---CCceeeeccc--chHHHHHHHHHHcCcEEEEeeCceee
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEP---SPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp---~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~ 121 (626)
.+.-.+.++++++.||.+=.+.+-+.+..- ....|+|.-. -|..++++..+++|++|++.+=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 456788999999999976665554333222 1234666432 38999999999999999999888774
No 117
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=61.62 E-value=56 Score=35.42 Aligned_cols=72 Identities=13% Similarity=0.202 Sum_probs=55.3
Q ss_pred eeCCCC---ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeeccc--chHHHHHHHHHHcCcEEEEeeCceee
Q 006904 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVC 121 (626)
Q Consensus 49 iHy~R~---~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~ 121 (626)
+|..|. +.++.++.++++++.+|-+=.+++-|.+++ ..+.|.|+.. -|..++++..++.|+++++.+=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455553 778889999999999987655555555543 3466776643 37899999999999999999989987
No 118
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=61.06 E-value=19 Score=38.56 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=50.4
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeeccc--chHHHHHHHHHHcCcEEEEeeCceeee
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~a 122 (626)
..+..++.++++++.+|.+=.+.+-+.+.. ..+.|+|+.. -|..+|++..+++|++|++..=|+|..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 677789999999999987555444432222 3456776543 389999999999999999998888863
No 119
>PLN02361 alpha-amylase
Probab=60.28 E-value=20 Score=39.94 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=40.5
Q ss_pred hhHHH---HHHHHHHCCCCEEEeceecC---ccCCCCce-ee----ecccchHHHHHHHHHHcCcEEEEee
Q 006904 57 DMWED---LIQKAKDGGLDVIETYVFWN---VHEPSPGN-YN----FEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 57 ~~W~d---~l~k~K~~GlN~V~tyv~Wn---~hEp~~G~-yd----F~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+-|+. .|.-+|++|+++|-+.=+.. .|--.+.. |+ |....+|.++++.|+++||+||+..
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 44544 45567999999998753222 22112222 22 4455799999999999999999885
No 120
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=59.42 E-value=24 Score=38.41 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=56.5
Q ss_pred EEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCce-eeecccchHHHHHHHHHHcCcEEEEeeCceeeee
Q 006904 45 FSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGN-YNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (626)
Q Consensus 45 ~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~-ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aE 123 (626)
++=++.+.|.+.+.=...|++|...|+..|-| ++|.|.+.. --|. -+.++++.|++.||+||+.+-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 44567777888888888999999999988766 677777552 1233 678889999999999999998876555
No 121
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=59.26 E-value=34 Score=28.37 Aligned_cols=40 Identities=10% Similarity=0.341 Sum_probs=29.8
Q ss_pred ccEEEEee---cCcEEEEEECCeEEEEEEcCC--CcceEEEEeee
Q 006904 492 LPTLIVQS---TGHALHIFINGQLSGSAFGTR--EARRFMYTGKV 531 (626)
Q Consensus 492 ~~~L~v~s---~gh~lhvFVNg~~~Gs~~g~~--~~~~~~~~~~v 531 (626)
++.|+|.- .++.+-|||+++|+|..+-.. +..+|.|+..|
T Consensus 15 n~~i~v~~rpk~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~I 59 (63)
T PF11324_consen 15 NPGITVKARPKKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMAI 59 (63)
T ss_pred CCceEEEcCCCCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEEE
Confidence 34566653 489999999999999999643 34678887655
No 122
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=58.93 E-value=14 Score=46.80 Aligned_cols=56 Identities=30% Similarity=0.454 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEe-ceecCccCCC---Cce-----ee----------ec--ccchHHHHHHHHHHcCcEEEEee
Q 006904 61 DLIQKAKDGGLDVIET-YVFWNVHEPS---PGN-----YN----------FE--GRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 61 d~l~k~K~~GlN~V~t-yv~Wn~hEp~---~G~-----yd----------F~--G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+.|.-+|++|+|+|+. +|+=...|.. .|. |+ |. +..++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999996 5653322221 110 22 23 56789999999999999999984
No 123
>PLN03059 beta-galactosidase; Provisional
Probab=58.78 E-value=12 Score=45.24 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=47.5
Q ss_pred eEEEEEEEEeCCCCccccCCCc-cEEEEeecCcEEEEEECCeEEEEEEcC---------------C---------CcceE
Q 006904 471 YLWYITSVDIGSSESFLHGGEL-PTLIVQSTGHALHIFINGQLSGSAFGT---------------R---------EARRF 525 (626)
Q Consensus 471 YlWY~T~v~~~~~d~~~~~~~~-~~L~v~s~gh~lhvFVNg~~~Gs~~g~---------------~---------~~~~~ 525 (626)
--||.++|++... .+ ..|.+.++|-- +|||||+-+|.-+-. . ++++-
T Consensus 620 ~twYK~~Fd~p~g-------~Dpv~LDm~gmGKG-~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q 691 (840)
T PLN03059 620 LTWYKTTFDAPGG-------NDPLALDMSSMGKG-QIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQ 691 (840)
T ss_pred ceEEEEEEeCCCC-------CCCEEEecccCCCe-eEEECCcccccccccccccCCCccccccccccchhhhccCCCcee
Confidence 5599999998532 23 46888888665 489999999987721 0 24444
Q ss_pred EEE-ee-eeecCccceEEEEEeecc
Q 006904 526 MYT-GK-VNLRAGRNKIALLSVAVG 548 (626)
Q Consensus 526 ~~~-~~-v~L~~G~N~islLS~tvG 548 (626)
++= .| .-|++|.|.|.|+=..=|
T Consensus 692 ~lYHVPr~~Lk~g~N~lViFEe~gg 716 (840)
T PLN03059 692 RWYHVPRSWLKPSGNLLIVFEEWGG 716 (840)
T ss_pred EEEeCcHHHhccCCceEEEEEecCC
Confidence 432 33 247999999998866433
No 124
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=58.25 E-value=46 Score=39.70 Aligned_cols=54 Identities=20% Similarity=0.363 Sum_probs=36.4
Q ss_pred HHHHHHCCCCEEEe-ceecCccC---CCCc-----eee----------e---cccchHHHHHHHHHHcCcEEEEee
Q 006904 63 IQKAKDGGLDVIET-YVFWNVHE---PSPG-----NYN----------F---EGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 63 l~k~K~~GlN~V~t-yv~Wn~hE---p~~G-----~yd----------F---~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
|.-+|++|+|+|.. +|+=...+ ...| -|| | ....+|.++++.|+++||.|||..
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 67789999999996 45411111 1111 011 1 124689999999999999999985
No 125
>PRK12677 xylose isomerase; Provisional
Probab=58.08 E-value=66 Score=35.62 Aligned_cols=89 Identities=15% Similarity=0.206 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHCCCCEEEeceecCccCCCCceeeec---ccchHHHHHHHHHHcCcEEE-EeeCceeeeecCCCCCCccc
Q 006904 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE---GRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWL 133 (626)
Q Consensus 58 ~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~---G~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL 133 (626)
.+++.++++++.|+..|+.. .+..--|+.+ -...+.++.+++++.||.|. +-+.-|. -|.+.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~--------~p~~~ 97 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFT--------HPVFK 97 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCC--------Ccccc
Confidence 47799999999999999873 1111111111 11358899999999999976 4442111 12111
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 134 KYVPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 134 ~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
.+ .+-+.|+..++...+.+.+.++.-+
T Consensus 98 ---~g-~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 98 ---DG-AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ---CC-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 2344567666766666666666665
No 126
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=57.77 E-value=42 Score=36.26 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=53.2
Q ss_pred cCcEEECCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEecee----cCccCCC------Cceee--------ec
Q 006904 32 RKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVF----WNVHEPS------PGNYN--------FE 93 (626)
Q Consensus 32 ~~~~~idG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~----Wn~hEp~------~G~yd--------F~ 93 (626)
.|.|+||=-| || .+.+...+.|+.|...++|+...++- |.+.-+. .|.+. |=
T Consensus 3 ~RG~mlD~aR--------~f--~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y 72 (329)
T cd06568 3 YRGLMLDVAR--------HF--FTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYY 72 (329)
T ss_pred ccceeeeccC--------CC--cCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcC
Confidence 4566666443 32 38899999999999999999998873 6543221 22221 00
Q ss_pred ccchHHHHHHHHHHcCcEEEEee
Q 006904 94 GRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 94 G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
-..|+..+++.|++.|+.||.-+
T Consensus 73 T~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 13599999999999999999775
No 127
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=57.69 E-value=22 Score=38.14 Aligned_cols=59 Identities=25% Similarity=0.382 Sum_probs=42.5
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceec---CccCCCCcee--------eecccchHHHHHHHHHHcCcEEEEee
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFW---NVHEPSPGNY--------NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~W---n~hEp~~G~y--------dF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+..-.++++.+|..|+|++-+-+== ++.=|....+ .|- |+.-||+-|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 55667789999999999998765421 1111222221 244 99999999999999999996
No 128
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=57.51 E-value=29 Score=37.07 Aligned_cols=88 Identities=23% Similarity=0.370 Sum_probs=58.4
Q ss_pred HHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcE--EEEeeCce--------eeeecCCCCCCc
Q 006904 62 LIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLY--AHLRIGPY--------VCAEWNFGGFPV 131 (626)
Q Consensus 62 ~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~--Vilr~GPy--------i~aEw~~GG~P~ 131 (626)
.|++-.++|.+.+-|=.| ||.+ .+.+|++.|++.|+. |++.+-|- + ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 455555688888777333 5656 899999999999954 56665552 3 5667778999
Q ss_pred ccccc-CCeeeecCC-hhHHHHHHHHHHHHHHHHHhc
Q 006904 132 WLKYV-PGISFRTDN-EPFKRAMQGFTEKIVNLMKSE 166 (626)
Q Consensus 132 WL~~~-p~i~~Rt~~-~~yl~~~~~~~~~i~~~l~~~ 166 (626)
|+.+. .. .. ++ +..+++--.+..++++.+.++
T Consensus 234 ~l~~~l~~--~~-d~~~~~~~~Gi~~a~e~i~~L~~~ 267 (296)
T PRK09432 234 WMAKMFDG--LD-DDAETRKLVGASIAMDMVKILSRE 267 (296)
T ss_pred HHHHHHHh--cC-CCHHHHHHHHHHHHHHHHHHHHHC
Confidence 99752 11 21 33 345556667777777777743
No 129
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=56.28 E-value=29 Score=37.46 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=52.1
Q ss_pred eeCCCC---ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeeccc--chHHHHHHHHHHcCcEEEEeeCceeee
Q 006904 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (626)
Q Consensus 49 iHy~R~---~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~a 122 (626)
+|..|. +.+..++.++++++.||.+=.+.+-+.+.. ..+.|.|+-. -|..++++..+++|+++++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 354453 667788999999999987544443333332 3445666543 378999999999999999998888864
No 130
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=55.60 E-value=23 Score=30.46 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=29.8
Q ss_pred cEEEEeecCcEEEEEECCeEEEEEEcCCCcceEEEEeeeee-cCccceEEEE
Q 006904 493 PTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNL-RAGRNKIALL 543 (626)
Q Consensus 493 ~~L~v~s~gh~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v~L-~~G~N~islL 543 (626)
..|++....--++-||||+++|+....+ ++. ..+ .+|.++|.++
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~----~~~~~~G~h~l~vv 78 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLF----WQPDRPGEHTLTVV 78 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCCC---eEE----eCCCCCeeEEEEEE
Confidence 3455554433999999999997765432 222 355 8899999884
No 131
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=55.01 E-value=2.7e+02 Score=30.91 Aligned_cols=135 Identities=13% Similarity=0.215 Sum_probs=74.3
Q ss_pred HCCCCEEEece----ecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCC-----
Q 006904 68 DGGLDVIETYV----FWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG----- 138 (626)
Q Consensus 68 ~~GlN~V~tyv----~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~----- 138 (626)
++|+..+|+.| ||+. |.+|-. .+-..+-+-+-..|+.|..-| | -.|+|++..-.
T Consensus 77 ~lg~si~Rv~I~~ndfsl~-----g~~d~w--~kels~Ak~~in~g~ivfASP-------W---spPa~Mktt~~~ngg~ 139 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG-----GSADNW--YKELSTAKSAINPGMIVFASP-------W---SPPASMKTTNNRNGGN 139 (433)
T ss_pred ccCceEEEEEecccccccC-----CCcchh--hhhcccchhhcCCCcEEEecC-------C---CCchhhhhccCcCCcc
Confidence 57888888876 4655 333211 011112233667888888876 4 47999975221
Q ss_pred -eeeec-CChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCc---ccHHHHHHHHHHHHHcCCC
Q 006904 139 -ISFRT-DNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGA---AGHNYMTWAAKMAVEMGTG 213 (626)
Q Consensus 139 -i~~Rt-~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~---~~~~Y~~~l~~~~~~~g~~ 213 (626)
-++|- ..++|-+ ++...+..++ .+|=|+-+.-+.||..... .|.. ...+..+.+++-+....-.
T Consensus 140 ~g~Lk~e~Ya~yA~----~l~~fv~~m~------~nGvnlyalSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~~~ 208 (433)
T COG5520 140 AGRLKYEKYADYAD----YLNDFVLEMK------NNGVNLYALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASINAE 208 (433)
T ss_pred ccccchhHhHHHHH----HHHHHHHHHH------hCCCceeEEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhccc
Confidence 13432 2344433 3444445556 3566999999999987542 2222 3456677777777665532
Q ss_pred cceeecC----CCCCCCcccc
Q 006904 214 VPWVMCK----EEDAPDPVIN 230 (626)
Q Consensus 214 vP~~~~~----~~~~p~~vi~ 230 (626)
.-.++-+ +.+.++++++
T Consensus 209 ~rV~~pes~~~~~~~~dp~ln 229 (433)
T COG5520 209 MRVIIPESFKDLPNMSDPILN 229 (433)
T ss_pred cEEecchhccccccccccccc
Confidence 2233322 2345566665
No 132
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=54.87 E-value=40 Score=35.81 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=47.7
Q ss_pred CChhhHHHHHHHHHHCCCCEEEecee----cCccCC----------------CCceeeecccchHHHHHHHHHHcCcEEE
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVF----WNVHEP----------------SPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~----Wn~hEp----------------~~G~ydF~G~~dL~~fl~la~~~GL~Vi 113 (626)
.+.+..++.|+.|...++|++..++- |.+--+ ..|.|-- .|+..+++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 48899999999999999999999876 754321 1223433 499999999999999999
Q ss_pred Eee
Q 006904 114 LRI 116 (626)
Q Consensus 114 lr~ 116 (626)
.-+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 775
No 133
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=54.04 E-value=47 Score=36.22 Aligned_cols=82 Identities=17% Similarity=0.318 Sum_probs=60.1
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCCC-ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecc--cchHHHHH
Q 006904 26 CSVTYDRKALLINGQRRILFSGSIHYPRS-TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEG--RYDLVRFI 102 (626)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~iHy~R~-~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G--~~dL~~fl 102 (626)
..|.. ..+.|.|.+++++.| +--. +++.-.+.-+.+|++|.++++.|+|= |+---|.|.| ..-|.-+.
T Consensus 80 t~v~~--~~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~ 150 (335)
T PRK08673 80 TVVKV--GDVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLA 150 (335)
T ss_pred CEEEE--CCEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHH
Confidence 33444 336777888888888 2222 57777788889999999999999995 4433367775 55677777
Q ss_pred HHHHHcCcEEEEee
Q 006904 103 KTIQKAGLYAHLRI 116 (626)
Q Consensus 103 ~la~~~GL~Vilr~ 116 (626)
+.|++.||.++-.+
T Consensus 151 ~~~~~~Gl~v~tev 164 (335)
T PRK08673 151 EAREETGLPIVTEV 164 (335)
T ss_pred HHHHHcCCcEEEee
Confidence 88999999988765
No 134
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=53.87 E-value=85 Score=35.36 Aligned_cols=104 Identities=18% Similarity=0.280 Sum_probs=63.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEe-ceecCccCCC----Cceeeec-----cc-----chHHHHHHHHH-HcCcEEEEeeCc
Q 006904 55 TPDMWEDLIQKAKDGGLDVIET-YVFWNVHEPS----PGNYNFE-----GR-----YDLVRFIKTIQ-KAGLYAHLRIGP 118 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~t-yv~Wn~hEp~----~G~ydF~-----G~-----~dL~~fl~la~-~~GL~Vilr~GP 118 (626)
+-+.|++.|+.+++.|+|+|.. ++---..... .+|..|+ .. .++.++++.++ ++||.++..+
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE--
Confidence 5679999999999999999984 2322111111 1222221 11 49999998884 7999987665
Q ss_pred eeeeecCCCCC-CccccccCCeeeecCChhHHHHH---HHHHHHHHHHHH
Q 006904 119 YVCAEWNFGGF-PVWLKYVPGISFRTDNEPFKRAM---QGFTEKIVNLMK 164 (626)
Q Consensus 119 yi~aEw~~GG~-P~WL~~~p~i~~Rt~~~~yl~~~---~~~~~~i~~~l~ 164 (626)
=||.-.. =.||.++|+.-.-..+.|+|..+ ++.+-++-..|.
T Consensus 98 ----V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 98 ----VLNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred ----eeccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 1444332 46999999865544555555443 233444444444
No 135
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=53.10 E-value=32 Score=41.77 Aligned_cols=64 Identities=22% Similarity=0.176 Sum_probs=45.9
Q ss_pred ChhhHHHHHHHHHHCCCCEEEe-ceecC----ccCCC---Cc--eeeecccchHHHHHHHHHHcCcEEEEeeCc
Q 006904 55 TPDMWEDLIQKAKDGGLDVIET-YVFWN----VHEPS---PG--NYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~t-yv~Wn----~hEp~---~G--~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 118 (626)
+-+.+.+.|.-++++|+++|-. +++=+ .|--. .. .-.|.+..++.+|++.|+++||.||+.+=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 5666889999999999999976 44311 11110 00 113557889999999999999999998644
No 136
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=53.01 E-value=31 Score=42.10 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=46.0
Q ss_pred CChhhHHHHHHHHHHCCCCEEEe-ceecCccCCCCce---e----------eecccchHHHHHHHHHHcCcEEEEeeCc
Q 006904 54 STPDMWEDLIQKAKDGGLDVIET-YVFWNVHEPSPGN---Y----------NFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~t-yv~Wn~hEp~~G~---y----------dF~G~~dL~~fl~la~~~GL~Vilr~GP 118 (626)
.+-+.+.+.|.-++++|+++|-. +++ +..+|. | .|.+..++.+|++.|+++||.|||.+=|
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 35677999999999999999986 343 111121 1 2446789999999999999999998644
No 137
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=53.00 E-value=31 Score=45.00 Aligned_cols=61 Identities=23% Similarity=0.338 Sum_probs=47.0
Q ss_pred CChhhHHHHHHHHHHCCCCEEEec-eecCccCCCCce---e----------eecccchHHHHHHHHHHcCcEEEEeeCc
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETY-VFWNVHEPSPGN---Y----------NFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~ty-v~Wn~hEp~~G~---y----------dF~G~~dL~~fl~la~~~GL~Vilr~GP 118 (626)
-+-+.|.+.|.-+|++|+|+|-.- +| +..+|. | .|.+..++.+|++.|+++||.|||.+=|
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 367789999999999999999863 43 222221 1 2557789999999999999999998644
No 138
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=52.96 E-value=22 Score=30.56 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=25.2
Q ss_pred CCceEeeccccc-cccccccc----Cc-ccHHHHHHHHHHH---HHcCCCcceee
Q 006904 173 GGPIILSQIENE-YGAQSKLL----GA-AGHNYMTWAAKMA---VEMGTGVPWVM 218 (626)
Q Consensus 173 gGpII~~QIENE-yg~~~~~~----~~-~~~~Y~~~l~~~~---~~~g~~vP~~~ 218 (626)
...|.+|+|-|| .++....+ +. ....|.+||++++ |+.+-..|+..
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 357999999999 55222111 11 2456777777665 44566777654
No 139
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=51.99 E-value=30 Score=40.74 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=42.8
Q ss_pred ChhhHHHHHHHHHHCCCCEEEe-ce-------ecCccCCC--CceeeecccchHHHHHHHHHHcCcEEEEe
Q 006904 55 TPDMWEDLIQKAKDGGLDVIET-YV-------FWNVHEPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~t-yv-------~Wn~hEp~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr 115 (626)
..+.=.+.|.-+|++|+++|+. +| -|.+---- -=.=.|..-.||.+||+.|+++||-|||.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 5566677888999999999996 23 25432110 00002344569999999999999999998
No 140
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=51.97 E-value=3.4e+02 Score=29.40 Aligned_cols=231 Identities=14% Similarity=0.128 Sum_probs=103.3
Q ss_pred HHHHHHCCCCEEEe-------ceecCccCCCCceeeecccch-HHHHHHHHHHcCcEEEEeeCceee-eecCCCCCCccc
Q 006904 63 IQKAKDGGLDVIET-------YVFWNVHEPSPGNYNFEGRYD-LVRFIKTIQKAGLYAHLRIGPYVC-AEWNFGGFPVWL 133 (626)
Q Consensus 63 l~k~K~~GlN~V~t-------yv~Wn~hEp~~G~ydF~G~~d-L~~fl~la~~~GL~Vilr~GPyi~-aEw~~GG~P~WL 133 (626)
.+.+|++|+.-|-. +-.|.-.-..-..-+-.+.+| +..|.+.|+++||.+-+ |.. ++|.....+.-.
T Consensus 97 ~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~----Y~S~~dw~~~~~~~~~ 172 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGL----YYSPWDWHHPDYPPDE 172 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEE----EEESSSCCCTTTTSSC
T ss_pred HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEE----EecchHhcCcccCCCc
Confidence 56889999996542 223654333222222223344 56788999999997665 443 355543333222
Q ss_pred cc-cCCeeeecCChhHHHHHH-HHHHHHHHHHHhccc--ccccCCceEeecccccccccccccCcccHHHHHHHHHHHHH
Q 006904 134 KY-VPGISFRTDNEPFKRAMQ-GFTEKIVNLMKSENL--FESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVE 209 (626)
Q Consensus 134 ~~-~p~i~~Rt~~~~yl~~~~-~~~~~i~~~l~~~~l--~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~ 209 (626)
.. .+. .....+.+.++++ .+..+|.+.+.++++ +.-+||. .. ....--...+.++.++
T Consensus 173 ~~~~~~--~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~--------~~--------~~~~~~~~~~~~~i~~ 234 (346)
T PF01120_consen 173 EGDENG--PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGW--------PD--------PDEDWDSAELYNWIRK 234 (346)
T ss_dssp HCHHCC----HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTT--------SC--------CCTHHHHHHHHHHHHH
T ss_pred cCCccc--ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCC--------Cc--------cccccCHHHHHHHHHH
Confidence 11 011 1112344445554 445555555554332 1112211 00 0111122556666666
Q ss_pred cCCCcceeecCCCCCCCccccCCCCccc-CcCCCC-CCCCCeEEee-ecCccccccCCCCCCCCHHHHHHHHHHHHHhCC
Q 006904 210 MGTGVPWVMCKEEDAPDPVINSCNGFYC-DAFTPN-QPYKPTIWTE-AWSGWFTEFGGPIHQRPVQDLAFAAARFIQKGG 286 (626)
Q Consensus 210 ~g~~vP~~~~~~~~~p~~vi~~~ng~~~-~~~~~~-~p~~P~~~tE-~~~Gwf~~wG~~~~~r~~~d~~~~~~~~~~~g~ 286 (626)
..-++-+............ .+.+ +...+. ....|.-.+. .-.+||-. -.....++++++...+....++||
T Consensus 235 ~qp~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pwE~~~ti~~~W~y~-~~~~~~ks~~~li~~l~~~vs~ng 308 (346)
T PF01120_consen 235 LQPDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPWETCTTIGPSWGYN-TPDEKYKSADELIDILVDSVSRNG 308 (346)
T ss_dssp HSTTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEEEEEEESSSSSS-C-GGGCGS--HHHHHHHHHHHHTBTE
T ss_pred hCCeEEEecccCCCCCccc-----cccchhccCCCCCCCCCccccCcCCCCCccc-CCCCCcCCHHHHHHHHHHHhccCc
Confidence 6555422211111000000 1111 111111 0112211111 12344420 112344688888888888889998
Q ss_pred eee-eeeEeecCCCCCCCCCCCcccccccCCCCCCCCCCCCchhhHHHHHHHHHHHHhhhcc
Q 006904 287 SFI-NYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHRAIKMCERAL 347 (626)
Q Consensus 287 s~~-nyYM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lk~lh~~l~~~~~~L 347 (626)
+++ |. +.+.+|.+.++.-..|+++.+.|+..++++
T Consensus 309 nlLLNi--------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~ngeaI 344 (346)
T PF01120_consen 309 NLLLNI--------------------------GPDPDGTIPEEQVERLREIGDWLKVNGEAI 344 (346)
T ss_dssp EEEEEE-----------------------------TTSS--HHHHHHHHHHHHHHHHHGGGT
T ss_pred eEEEec--------------------------CCCCCCCcCHHHHHHHHHHHHHHHhccccc
Confidence 853 22 234567777778889999999999877764
No 141
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=51.96 E-value=42 Score=37.29 Aligned_cols=71 Identities=14% Similarity=0.326 Sum_probs=49.3
Q ss_pred CChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeeccc--chHHHHHHHHHHcCcEEEEeeCceeeeecC
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCAEWN 125 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~aEw~ 125 (626)
.+.+...+.++.+++.||-.=...+-..+.. ..+.|.|+.. -|..++++.++++|+++++..-|+|+-+-+
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CCHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 3577788999999999988766655533333 4445555532 289999999999999999999999986644
No 142
>PLN02540 methylenetetrahydrofolate reductase
Probab=51.49 E-value=32 Score=39.99 Aligned_cols=90 Identities=16% Similarity=0.242 Sum_probs=60.8
Q ss_pred HHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcC--cEEEEeeCceee-------eecCCCCCCcc
Q 006904 62 LIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAG--LYAHLRIGPYVC-------AEWNFGGFPVW 132 (626)
Q Consensus 62 ~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~G--L~Vilr~GPyi~-------aEw~~GG~P~W 132 (626)
.|++-.++|.+.|-|=.| ||.+ .+.+|++.|+++| +.+|+.+-|-.. +++..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 333344579999988443 5666 7889999999999 556777767442 34554557888
Q ss_pred ccccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006904 133 LKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (626)
Q Consensus 133 L~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~ 165 (626)
+.+.=+ ....+++..++.--++..++++.|.+
T Consensus 228 i~~rLe-~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 228 ITAALE-PIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 875211 13445566677777788888888874
No 143
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=51.18 E-value=67 Score=33.67 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=67.4
Q ss_pred eEEEEEEeeCCCCC----hhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEE--EEe
Q 006904 42 RILFSGSIHYPRST----PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA--HLR 115 (626)
Q Consensus 42 ~~l~sG~iHy~R~~----~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~V--ilr 115 (626)
.+-+++..|+.+.| .+.=.++|++=.++|.+.+-|=.+ ||.+ .+.+|++.|++.|+.+ ++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 47888888776532 222224566666789998887333 5555 8899999999997664 444
Q ss_pred eCceee-------eecCCCCCCcccccc-CCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006904 116 IGPYVC-------AEWNFGGFPVWLKYV-PGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (626)
Q Consensus 116 ~GPyi~-------aEw~~GG~P~WL~~~-p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~ 165 (626)
+-|-.. .+|..-.+|.|+.+. .. ...+....+++--++..++++.+.+
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~--~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLEK--YDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444322 225556678888751 11 1122234566666777777777763
No 144
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=49.61 E-value=94 Score=33.10 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=47.8
Q ss_pred ChhhHHHHHHHHHHCCCCEEEece----ecCcc-CCC--CceeeecccchHHHHHHHHHHcCcEEEEeeCceeeee
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYV----FWNVH-EPS--PGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv----~Wn~h-Ep~--~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aE 123 (626)
+.+.-.+.|+.|...|+|.+..|+ .+..+ |-. +|.|-= .++.++++.|++.||.||.-+--.-|.|
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 567889999999999999999875 23322 111 344433 4999999999999999998764333444
No 145
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=49.53 E-value=1.3e+02 Score=32.19 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=44.5
Q ss_pred ChhhHHHHHHHHHHCCCCEEEecee--cCcc---CC------------------------CCceeeecccchHHHHHHHH
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVF--WNVH---EP------------------------SPGNYNFEGRYDLVRFIKTI 105 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~--Wn~h---Ep------------------------~~G~ydF~G~~dL~~fl~la 105 (626)
+.+..++.|+.|...++|++..++- |.+- .| ..|.|- ..++..+++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 7899999999999999999997643 3221 11 112222 35999999999
Q ss_pred HHcCcEEEEee
Q 006904 106 QKAGLYAHLRI 116 (626)
Q Consensus 106 ~~~GL~Vilr~ 116 (626)
++.|+.||.-+
T Consensus 92 ~~rgI~vIPEI 102 (326)
T cd06564 92 KDRGVNIIPEI 102 (326)
T ss_pred HHcCCeEeccC
Confidence 99999999764
No 146
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=49.36 E-value=47 Score=32.78 Aligned_cols=88 Identities=17% Similarity=0.314 Sum_probs=55.2
Q ss_pred EEEeeCCCC-----ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeee--cc-cchHHHHHHHHHHcCcEEEEeeC
Q 006904 46 SGSIHYPRS-----TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNF--EG-RYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 46 sG~iHy~R~-----~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF--~G-~~dL~~fl~la~~~GL~Vilr~G 117 (626)
-|.+||+|. +.++.+..++.++..+++. ...|--.|..++.+.- +- ...+.+|+++++++|.++++-.+
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 399999864 3666888888888865532 1123344443343321 11 13678999999999999999888
Q ss_pred ceeeee----c---CCCCCCcccccc
Q 006904 118 PYVCAE----W---NFGGFPVWLKYV 136 (626)
Q Consensus 118 Pyi~aE----w---~~GG~P~WL~~~ 136 (626)
++---. . +....|.|+.+.
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecCC
Confidence 752111 1 135678999763
No 147
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=48.23 E-value=82 Score=32.33 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=55.2
Q ss_pred Cceeeec-ccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006904 87 PGNYNFE-GRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (626)
Q Consensus 87 ~G~ydF~-G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~ 165 (626)
.|...+. +..++..+++.|++.|++|++.+|= |.. ..... + ..++. ..++|.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~---~~~~~----~---~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSP---PEFTA----A---LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCC---Ccchh----h---hcCHH---HHHHHHHHHHHHHHH
Confidence 4566654 3457889999999999999999861 111 11110 1 12333 345789999999997
Q ss_pred cccccccCCceEeecccccccccccccCcccHHHHHHHHHHHHH
Q 006904 166 ENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVE 209 (626)
Q Consensus 166 ~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~ 209 (626)
+++ =++.|+=|+... ..+.|.+.++++..+
T Consensus 98 ~~~--------DGIdiDwE~~~~------~~~~~~~fv~~Lr~~ 127 (253)
T cd06545 98 YNL--------DGIDVDLEGPDV------TFGDYLVFIRALYAA 127 (253)
T ss_pred hCC--------CceeEEeeccCc------cHhHHHHHHHHHHHH
Confidence 654 345566676532 134566555555443
No 148
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=48.15 E-value=14 Score=34.71 Aligned_cols=52 Identities=27% Similarity=0.438 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 006904 97 DLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSE 166 (626)
Q Consensus 97 dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~ 166 (626)
||..||++|++.|+.|++-+-| +++.|. . .-|+ =++.-+.++++|-.+++++
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~P-vNg~wy--------d-ytG~--------~~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQP-VNGKWY--------D-YTGL--------SKEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-----HHHH--------H-HTT----------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCceEEEecC-CcHHHH--------H-HhCC--------CHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999887766 555552 1 1111 0244567888888888844
No 149
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=47.26 E-value=32 Score=43.18 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHcCcEEEEee
Q 006904 96 YDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 96 ~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+|.++++.|+++||.|||..
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 579999999999999999984
No 150
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=47.07 E-value=59 Score=38.22 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=74.4
Q ss_pred CEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCc
Q 006904 39 GQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGP 118 (626)
Q Consensus 39 G~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GP 118 (626)
+++-+.+++..|+.+.+.+.=-++|++-.++|.+.+-|=.++ |-+ .+.+|++.|++.++.+|..+-|
T Consensus 460 ~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~f----------d~~---~~~~~~~~~~~~~vpIi~GImP 526 (612)
T PRK08645 460 KKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVY----------DEE---LIEELLEATKHLGVPIFIGIMP 526 (612)
T ss_pred CCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccC----------CHH---HHHHHHHHHhcCCCCEEEEeee
Confidence 345688999998776655544455666668999999995553 434 7888998898778888888777
Q ss_pred eee--------eecCCCCCCcccccc-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 119 YVC--------AEWNFGGFPVWLKYV-PGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 119 yi~--------aEw~~GG~P~WL~~~-p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
... .+|..-=+|.|+.+. .. .. +...++++--++..++++.++
T Consensus 527 i~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 527 LVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred cCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 433 234444468888751 11 11 334667777777777777776
No 151
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=46.79 E-value=32 Score=42.21 Aligned_cols=21 Identities=14% Similarity=0.445 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHcCcEEEEee
Q 006904 96 YDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 96 ~dL~~fl~la~~~GL~Vilr~ 116 (626)
.++.++++.|+++||.|||..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999984
No 152
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=46.71 E-value=72 Score=25.62 Aligned_cols=45 Identities=33% Similarity=0.433 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEe
Q 006904 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 58 ~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 115 (626)
..++.++.+|+.|++.|.+= -|. ++. ...++.+++++.||.+|..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 36689999999999999762 111 233 4678889999999987644
No 153
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.68 E-value=52 Score=35.72 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=50.2
Q ss_pred eeCCCC---ChhhHHHHHHHHHHCCCCEEEece----------ecCccCC---------CCceeeecc-c--chHHHHHH
Q 006904 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYV----------FWNVHEP---------SPGNYNFEG-R--YDLVRFIK 103 (626)
Q Consensus 49 iHy~R~---~~~~W~d~l~k~K~~GlN~V~tyv----------~Wn~hEp---------~~G~ydF~G-~--~dL~~fl~ 103 (626)
+|..|. +.+.-++.++++++.||.+=.+++ .|+...- .-+.++|.. . -|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455553 567788999999999997655544 2432211 113334431 1 28999999
Q ss_pred HHHHcCcEEEEeeCceee
Q 006904 104 TIQKAGLYAHLRIGPYVC 121 (626)
Q Consensus 104 la~~~GL~Vilr~GPyi~ 121 (626)
..++.|++|+|.+=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888875
No 154
>PRK03705 glycogen debranching enzyme; Provisional
Probab=45.74 E-value=1.2e+02 Score=36.25 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCEEEe-ceecCccCCCC---c-----eee----------ecc-----cchHHHHHHHHHHcCcEEEEee
Q 006904 62 LIQKAKDGGLDVIET-YVFWNVHEPSP---G-----NYN----------FEG-----RYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 62 ~l~k~K~~GlN~V~t-yv~Wn~hEp~~---G-----~yd----------F~G-----~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.|.-+|++|+|+|.. +|+=...|+.. | -|| |.. ..++.++++.|+++||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999996 45422212110 1 011 222 1479999999999999999984
No 155
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=45.47 E-value=26 Score=30.28 Aligned_cols=37 Identities=27% Similarity=0.623 Sum_probs=29.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHc
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKA 108 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~ 108 (626)
.+..|-..+|.+-. .||.|..|||. +|.+||++|-|-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 57789999988876 58999999999 999999999873
No 156
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=45.33 E-value=40 Score=30.65 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=29.6
Q ss_pred CcEEEEEECCeEEEEEEcCCCcceEEEEeeeeecCccceEEEEEeecc
Q 006904 501 GHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNKIALLSVAVG 548 (626)
Q Consensus 501 gh~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v~L~~G~N~islLS~tvG 548 (626)
+....|||||+++|+-... .|.+ +.+.+|.++|+.-+...+
T Consensus 40 ~~~~~v~vdg~~ig~l~~g----~y~~---~~v~pG~h~i~~~~~~~~ 80 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKNG----GYFY---VEVPPGKHTISAKSEFSS 80 (117)
T ss_pred cccceEEECCEEEEEeCCC----eEEE---EEECCCcEEEEEecCccC
Confidence 5677899999999995432 3554 468999999988554333
No 157
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=44.71 E-value=45 Score=40.18 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=47.7
Q ss_pred ChhhHHHHHHHHHHCCCC--EEEeceecCccCCCCceeeeccc----chHHHHHHHHHHcCcEEEEeeCceeeeecC
Q 006904 55 TPDMWEDLIQKAKDGGLD--VIETYVFWNVHEPSPGNYNFEGR----YDLVRFIKTIQKAGLYAHLRIGPYVCAEWN 125 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN--~V~tyv~Wn~hEp~~G~ydF~G~----~dL~~fl~la~~~GL~Vilr~GPyi~aEw~ 125 (626)
.-+.-++..+.++++||. ++-+-+.|.-+ -=||+-+ .++..|++..++.|+++++.+-|+|..--.
T Consensus 309 nls~~~dvv~~~~~agiPld~~~~DiDyMd~-----ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~ 380 (805)
T KOG1065|consen 309 NLSVVRDVVENYRAAGIPLDVIVIDIDYMDG-----YKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSS 380 (805)
T ss_pred cHHHHHHHHHHHHHcCCCcceeeeehhhhhc-----ccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCcc
Confidence 344458899999999998 66666766522 2233321 268999999999999999999888864433
No 158
>PLN00196 alpha-amylase; Provisional
Probab=44.50 E-value=53 Score=36.93 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEec-eecCc--cCCCCce-ee-----ecccchHHHHHHHHHHcCcEEEEee
Q 006904 60 EDLIQKAKDGGLDVIETY-VFWNV--HEPSPGN-YN-----FEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~ty-v~Wn~--hEp~~G~-yd-----F~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+.|.-+|++|+++|-.. ++=+. |--.+.. |+ |....+|.++++.|+++||.||+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 456677899999999874 44221 2222221 22 3345699999999999999999985
No 159
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=44.49 E-value=1.2e+02 Score=31.18 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=58.5
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEeceecCccCCC-Cceee---e-cccchHHHHHHHHHHcCcEEEEeeCceeeeecCCC
Q 006904 53 RSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPS-PGNYN---F-EGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG 127 (626)
Q Consensus 53 R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~-~G~yd---F-~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G 127 (626)
..+++.-+..-+.+++.|+.+...-. ..|.+. ++.-| . .....+.+.|++|++.|..+|.-.
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~----------- 119 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLA----------- 119 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC-----------
Confidence 34677777778888899999876421 112111 11100 0 012257888999999999876432
Q ss_pred CCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccc
Q 006904 128 GFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYG 186 (626)
Q Consensus 128 G~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg 186 (626)
|.+.|.. ..++...+.+...++.++++.+++ | |-+.|||-.+
T Consensus 120 ~~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 120 GYDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred Ccccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 1122211 122444455666778888877744 3 3456777543
No 160
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=43.84 E-value=26 Score=38.32 Aligned_cols=46 Identities=30% Similarity=0.656 Sum_probs=37.2
Q ss_pred cCCCCceeeec-c---------cchHHHHH--HHHHHcCcEEEEeeCceeeeecCCCCC
Q 006904 83 HEPSPGNYNFE-G---------RYDLVRFI--KTIQKAGLYAHLRIGPYVCAEWNFGGF 129 (626)
Q Consensus 83 hEp~~G~ydF~-G---------~~dL~~fl--~la~~~GL~Vilr~GPyi~aEw~~GG~ 129 (626)
.|-.||||.|. | +.+..|++ +.|++.|+-+-+-|=| +.+.|+..|-
T Consensus 202 ~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp-~~g~WngaG~ 259 (380)
T KOG0683|consen 202 VEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKP-ILGDWNGAGC 259 (380)
T ss_pred ccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCC-CCCcccCccc
Confidence 36889999996 3 35666666 7899999999999977 9999998653
No 161
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=43.78 E-value=97 Score=33.72 Aligned_cols=118 Identities=25% Similarity=0.429 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEE-EeeCceeeeecCCCCCCcccc
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCAEWNFGGFPVWLK 134 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~aEw~~GG~P~WL~ 134 (626)
.-.|+.--.-.+.+||.+|++|-+|+.-+.. .|++.||.-.+.+--+.| +.. .||-=..|
T Consensus 132 nPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---------~d~e~~Lsdl~~APe~si~iLh---aCAhNPTG------- 192 (410)
T KOG1412|consen 132 NPTWENHHAIFEKAGFTTVATYPYWDAENKC---------VDLEGFLSDLESAPEGSIIILH---ACAHNPTG------- 192 (410)
T ss_pred CCchhHHHHHHHHcCCceeeeeeeecCCCce---------ecHHHHHHHHhhCCCCcEEeee---ccccCCCC-------
Confidence 3459888888999999999999999876543 368888888887766643 222 35443232
Q ss_pred ccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHHHcCCCc
Q 006904 135 YVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGV 214 (626)
Q Consensus 135 ~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 214 (626)
| || .+.=+.+|++.|++..||.-= =|+.| |. +.|.. +==.|+.+...+.| .
T Consensus 193 ----m-----DP-----T~EQW~qia~vik~k~lf~fF---DiAYQ-----Gf---ASGD~--~~DawAiR~fV~~g--~ 243 (410)
T KOG1412|consen 193 ----M-----DP-----TREQWKQIADVIKSKNLFPFF---DIAYQ-----GF---ASGDL--DADAWAIRYFVEQG--F 243 (410)
T ss_pred ----C-----CC-----CHHHHHHHHHHHHhcCceeee---ehhhc-----cc---ccCCc--cccHHHHHHHHhcC--C
Confidence 2 11 122345677788866654110 03333 21 22322 22358888888888 5
Q ss_pred ceeecCC
Q 006904 215 PWVMCKE 221 (626)
Q Consensus 215 P~~~~~~ 221 (626)
+++.|+.
T Consensus 244 e~fv~QS 250 (410)
T KOG1412|consen 244 ELFVCQS 250 (410)
T ss_pred eEEEEhh
Confidence 5777764
No 162
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=43.72 E-value=71 Score=27.07 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=29.4
Q ss_pred cEEEEeecCcEEEEEECCeEEEEEEcCCCcceEEEEeeeeecCccce-EEEEE
Q 006904 493 PTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAGRNK-IALLS 544 (626)
Q Consensus 493 ~~L~v~s~gh~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v~L~~G~N~-islLS 544 (626)
..|..........++|||.-+.+. .....++|..|.|. |.|--
T Consensus 27 v~v~a~~~~~~a~v~vng~~~~~~---------~~~~~i~L~~G~n~~i~i~V 70 (88)
T PF12733_consen 27 VTVTATPEDSGATVTVNGVPVNSG---------GYSATIPLNEGENTVITITV 70 (88)
T ss_pred EEEEEEECCCCEEEEEcCEEccCC---------CcceeeEccCCCceEEEEEE
Confidence 355555666778999999877543 12335788899998 66654
No 163
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=43.72 E-value=58 Score=36.87 Aligned_cols=56 Identities=29% Similarity=0.413 Sum_probs=46.0
Q ss_pred eeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 49 iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.-|.+.|.+.-++.++++.++|++.|++...-|.. +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 44666788888899999999999999999876653 258889999999999886654
No 164
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=43.27 E-value=41 Score=35.06 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=35.1
Q ss_pred HHHHHHHHHCCCCEEEeceecC--ccCCCCceeeecccchHHHHHHHHHHcCcEEEEe
Q 006904 60 EDLIQKAKDGGLDVIETYVFWN--VHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~tyv~Wn--~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 115 (626)
++.++++|++|++.|...+-=+ .++...+..+|+ +..+.++.++++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 5678899999999988765411 122222233444 6677789999999986533
No 165
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=40.82 E-value=69 Score=33.90 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=43.5
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCC--CCc--eeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEP--SPG--NYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp--~~G--~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++ .++- ..+.+.+++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 4788999999999999999999975432111 122 2332 378899999999999887664
No 166
>PLN02877 alpha-amylase/limit dextrinase
Probab=40.79 E-value=48 Score=41.01 Aligned_cols=21 Identities=14% Similarity=0.486 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHcCcEEEEee
Q 006904 96 YDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 96 ~dL~~fl~la~~~GL~Vilr~ 116 (626)
.++.++++.|+++||.|||..
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999984
No 167
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=40.57 E-value=50 Score=36.01 Aligned_cols=114 Identities=20% Similarity=0.353 Sum_probs=66.4
Q ss_pred EEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHH
Q 006904 73 VIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAM 152 (626)
Q Consensus 73 ~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~ 152 (626)
.|.+.|+|+++--+. -=...++.|+++|+.|+--+ .=||+ +-+.|+... ++ +++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~l----L~-~~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLEDF----LK-KDE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHHH----hc-cCc---ccc
Confidence 477778888754330 11345899999999997432 33665 345666531 22 111 223
Q ss_pred HHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHHHc--CCCccee
Q 006904 153 QGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEM--GTGVPWV 217 (626)
Q Consensus 153 ~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~--g~~vP~~ 217 (626)
.++.++|+++++.+++ + | +.+-+|+..+.. ...+.-.++++.|++.+++. +..|-|+
T Consensus 89 ~~~a~kLv~lak~yGf---D-G--w~iN~E~~~~~~--~~~~~l~~F~~~L~~~~~~~~~~~~v~WY 147 (339)
T cd06547 89 FPVADKLVEVAKYYGF---D-G--WLINIETELGDA--EKAKRLIAFLRYLKAKLHENVPGSLVIWY 147 (339)
T ss_pred hHHHHHHHHHHHHhCC---C-c--eEeeeeccCCcH--HHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 5788899999997664 2 3 778888887311 01112345555666666553 3456666
No 168
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=39.41 E-value=1.6e+02 Score=29.90 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=71.2
Q ss_pred ChhhHHHHHHHHHHCCCCE-EEe--ceecCccCC---CCce--eeec-----------c--cchHHHHHHHHHHcCcEEE
Q 006904 55 TPDMWEDLIQKAKDGGLDV-IET--YVFWNVHEP---SPGN--YNFE-----------G--RYDLVRFIKTIQKAGLYAH 113 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~-V~t--yv~Wn~hEp---~~G~--ydF~-----------G--~~dL~~fl~la~~~GL~Vi 113 (626)
-++.-.+.++++|+.|+.+ |+| |+.|...+. .=+. +|.. | +..+.+.|+.+.+.|..+.
T Consensus 52 q~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~ 131 (213)
T PRK10076 52 QAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVI 131 (213)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEE
Confidence 3566678899999999864 444 444422221 1122 2322 2 2345566777888999888
Q ss_pred EeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccc----------
Q 006904 114 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIEN---------- 183 (626)
Q Consensus 114 lr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIEN---------- 183 (626)
+|. |. +|++ ++++.-++++.+|+..+. +. +|-+..--+
T Consensus 132 iR~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg 179 (213)
T PRK10076 132 PRL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLG 179 (213)
T ss_pred EEE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcC
Confidence 887 33 3664 355655555555554430 11 222111111
Q ss_pred -cccccccccCcccHHHHHHHHHHHHHcCCCc
Q 006904 184 -EYGAQSKLLGAAGHNYMTWAAKMAVEMGTGV 214 (626)
Q Consensus 184 -Eyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 214 (626)
+|-. .....+.++.++.+++.+++.|+.+
T Consensus 180 ~~y~~--~~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 180 KTWSM--KEVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred CcCcc--CCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 2211 0122467889999999999988875
No 169
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=38.68 E-value=1.2e+02 Score=32.74 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=84.4
Q ss_pred eeEEEecCcEEECCEEeEEEEEEee-CCCCChhh---HHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHH
Q 006904 26 CSVTYDRKALLINGQRRILFSGSIH-YPRSTPDM---WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRF 101 (626)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~iH-y~R~~~~~---W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~f 101 (626)
..||+-+-.+.+|. .=+-+.++ -+-...+. -..++...++.|.+||-. +.+- .=.||..+.
T Consensus 16 lGvTl~HEHl~~~~---~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD--------~T~~----~~GRdv~~m 80 (316)
T COG1735 16 LGVTLMHEHLFIDP---YEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVD--------ATNI----GIGRDVLKM 80 (316)
T ss_pred ccceeehhhhccch---HHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEee--------CCcc----ccCcCHHHH
Confidence 45666677777775 00112222 11121111 233455666678888743 2210 112699999
Q ss_pred HHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecc
Q 006904 102 IKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQI 181 (626)
Q Consensus 102 l~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 181 (626)
.+.+++-||.+|...|+|.-+.| |.|+...| ++.+...+++.+++ .+ .|+=|..=|
T Consensus 81 ~~vs~atglnIV~~TGfy~~~~~-----p~~~~~~~--------------i~~~ae~~v~ei~~-Gi----~gT~ikAGi 136 (316)
T COG1735 81 RRVAEATGLNIVAATGFYKAAFH-----PEYFALRP--------------IEELAEFVVKEIEE-GI----AGTGIKAGI 136 (316)
T ss_pred HHHHHHhCCcEEEeccccccccc-----hhHHhhCC--------------HHHHHHHHHHHHHh-cc----cCCccccce
Confidence 99999999999999999998876 46776433 44555556666652 21 233333333
Q ss_pred cccccccccccCcccHHHHHHHHHHHHHc-CCCcceeecCC
Q 006904 182 ENEYGAQSKLLGAAGHNYMTWAAKMAVEM-GTGVPWVMCKE 221 (626)
Q Consensus 182 ENEyg~~~~~~~~~~~~Y~~~l~~~~~~~-g~~vP~~~~~~ 221 (626)
=-|-|.... .- +.=.+-|+..|++. .+++|+.+-.+
T Consensus 137 Ik~~~~~~~-iT---p~Eek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 137 IKEAGGSPA-IT---PLEEKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred eeeccCccc-CC---HHHHHHHHHHHHHhhhcCCCeEEecc
Confidence 345444321 11 22234455555543 66899876554
No 170
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=38.05 E-value=46 Score=34.15 Aligned_cols=55 Identities=13% Similarity=-0.007 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHCCCCEEEeceecCccCCCC----ceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSP----GNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 58 ~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~----G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+++.++.+++.|..+|.+. ..+.... -.+... ...|.++.+.|+++|+.+.+-+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~~---~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLIS---AAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEEc---CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 55667889999999999663 2232211 112211 1368888999999999998887
No 171
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=37.91 E-value=63 Score=33.54 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=38.5
Q ss_pred HHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 63 l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
.+++|++|++.|-+ .|..++--|.= .+.++.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~E-t~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFGE-TDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCCC-CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 34789999998888 46555544443 356888889999999999999997
No 172
>PRK09267 flavodoxin FldA; Validated
Probab=37.62 E-value=2e+02 Score=27.40 Aligned_cols=74 Identities=7% Similarity=0.054 Sum_probs=48.6
Q ss_pred ECCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEE
Q 006904 37 INGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (626)
Q Consensus 37 idG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 113 (626)
++.-..++++...|....+|..|.+.+++++...+.-..+.+|= ......-.-.|. .-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 44556789999999877778889999998887777766777773 211111001122 235667778888896654
No 173
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=37.55 E-value=3.2e+02 Score=27.17 Aligned_cols=124 Identities=23% Similarity=0.322 Sum_probs=65.6
Q ss_pred EEeEEEEEEeeCCC--C-ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHH-HHHHHcCcE-EEE
Q 006904 40 QRRILFSGSIHYPR--S-TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFI-KTIQKAGLY-AHL 114 (626)
Q Consensus 40 ~~~~l~sG~iHy~R--~-~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl-~la~~~GL~-Vil 114 (626)
||++.++.||=-=. + |--.|+..+ ++..|++.|.. -|+|+--++.++ ++.++..-. ++|
T Consensus 2 k~~v~YGsSItqG~~Asrpg~~~~~~~--aR~l~~~~iNL--------------GfsG~~~le~~~a~~ia~~~a~~~~l 65 (178)
T PF14606_consen 2 KRWVAYGSSITQGACASRPGMAYPAIL--ARRLGLDVINL--------------GFSGNGKLEPEVADLIAEIDADLIVL 65 (178)
T ss_dssp -EEEEEE-TT-TTTT-SSGGGSHHHHH--HHHHT-EEEEE--------------E-TCCCS--HHHHHHHHHS--SEEEE
T ss_pred CeEEEECChhhcCCCCCCCcccHHHHH--HHHcCCCeEee--------------eecCccccCHHHHHHHhcCCCCEEEE
Confidence 67788887776422 3 344498766 56779999976 688887777663 555554334 346
Q ss_pred eeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec-ccccccccccccC
Q 006904 115 RIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQ-IENEYGAQSKLLG 193 (626)
Q Consensus 115 r~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q-IENEyg~~~~~~~ 193 (626)
..||- .+.+.|.+.+..|++.|-+. ...=||++++ +-.+-+.....-+
T Consensus 66 d~~~N-----------------------~~~~~~~~~~~~fv~~iR~~--------hP~tPIllv~~~~~~~~~~~~~~~ 114 (178)
T PF14606_consen 66 DCGPN-----------------------MSPEEFRERLDGFVKTIREA--------HPDTPILLVSPIPYPAGYFDNSRG 114 (178)
T ss_dssp EESHH-----------------------CCTTTHHHHHHHHHHHHHTT---------SSS-EEEEE----TTTTS--TTS
T ss_pred EeecC-----------------------CCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEecCCccccccCchHH
Confidence 66651 13356778888887776221 2245999999 5544443322222
Q ss_pred cccHHHHHHHHHHHHHc
Q 006904 194 AAGHNYMTWAAKMAVEM 210 (626)
Q Consensus 194 ~~~~~Y~~~l~~~~~~~ 210 (626)
....++.+.+++.++++
T Consensus 115 ~~~~~~~~~~r~~v~~l 131 (178)
T PF14606_consen 115 ETVEEFREALREAVEQL 131 (178)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455666666666654
No 174
>PRK10658 putative alpha-glucosidase; Provisional
Probab=37.37 E-value=93 Score=37.08 Aligned_cols=66 Identities=18% Similarity=0.370 Sum_probs=47.8
Q ss_pred ChhhHHHHHHHHHHCCCCE--EEeceecCccCC-CCceeeeccc--chHHHHHHHHHHcCcEEEEeeCceeee
Q 006904 55 TPDMWEDLIQKAKDGGLDV--IETYVFWNVHEP-SPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~--V~tyv~Wn~hEp-~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~a 122 (626)
+.+.-.+.++++++.||-+ |..-.+|- +. .-+.|.|+-. -|..++++..++.|+++++.+=|||..
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 4555678899999999864 44444553 32 2245666533 288999999999999999999998864
No 175
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=37.21 E-value=64 Score=37.87 Aligned_cols=53 Identities=25% Similarity=0.403 Sum_probs=44.9
Q ss_pred eeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEE
Q 006904 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (626)
Q Consensus 49 iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 113 (626)
+=|.|+|.+.-+..++++++.|+++|++....|.. +++...++.|+++|+.+.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEE
Confidence 55777788888899999999999999998766653 378899999999999864
No 176
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=36.98 E-value=1.3e+02 Score=32.33 Aligned_cols=68 Identities=22% Similarity=0.445 Sum_probs=49.6
Q ss_pred ChhhHHHHHHHHHHCCCCEEEecee-cCc-cCCCCce-----eeeccc--chHHHHHHHHHHcCcEEEEeeCceeee
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVF-WNV-HEPSPGN-----YNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCA 122 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~-Wn~-hEp~~G~-----ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~a 122 (626)
+.++-.+.++++++.||-+=.+++- |.. ++..-|. |.|+-. -|..++++..++.|++|++.+=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 7777899999999999886666554 633 2332232 333332 389999999999999999998887753
No 177
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=36.73 E-value=64 Score=33.68 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=35.2
Q ss_pred HHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 63 l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
.+++|++|++.|-+ .|..++-.|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 79 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999988 566666555422 33444444559999999999997
No 178
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.39 E-value=89 Score=32.80 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=40.9
Q ss_pred CChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEe
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 115 (626)
.|.+.=+++++++.+.|++.|+++++-+. + ..+...++.|+++|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEEE
Confidence 45666788999999999999999887654 2 37889999999999887753
No 179
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=36.09 E-value=2.1e+02 Score=31.04 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHHHcCCCcceeecC
Q 006904 150 RAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGTGVPWVMCK 220 (626)
Q Consensus 150 ~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 220 (626)
++.++|.-.-+.++++ +|=||+.+ ||....... ...++=++.+++.++++|. +|+++..
T Consensus 247 e~dr~~~l~~L~~~~~------~G~~Vl~I----DY~~~~~~~-~~n~~~~~~~~~~~~~~Gf-~pYVsd~ 305 (315)
T TIGR01370 247 EAERQRRLLALYRLWQ------QGKFVLTV----DYVDDGTKT-NENPARMKDAAEKARAAGL-IPYVAES 305 (315)
T ss_pred HHHHHHHHHHHHHHHH------CCCcEEEE----EecCCcccc-hhhHHHHHHHHHHHHHcCC-eeeecCc
Confidence 4445555555555553 25588877 443210000 0135566778888888998 5888743
No 180
>PRK06703 flavodoxin; Provisional
Probab=35.41 E-value=2.2e+02 Score=26.57 Aligned_cols=103 Identities=12% Similarity=0.034 Sum_probs=59.0
Q ss_pred ECCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 37 INGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 37 idG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+..-..++++...+-.-.+|..+.+.+..+++.-++.....+|-...-. |. ......+.+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~-~~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YP-LFCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hH-HHHHHHHHHHHHHHHCCCEEcccC
Confidence 4444556665544433345666777788887665665555565321110 11 012355667788899999877663
Q ss_pred CceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 117 GPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 117 GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
.. +.+..++..-++.++.|.++|++.++
T Consensus 121 --~~------------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 --LK------------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred --eE------------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 11111224667888889888887776
No 181
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=35.30 E-value=1.1e+02 Score=31.93 Aligned_cols=102 Identities=19% Similarity=0.252 Sum_probs=61.1
Q ss_pred eeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcC--cEEEEeeCceee-----
Q 006904 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAG--LYAHLRIGPYVC----- 121 (626)
Q Consensus 49 iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~G--L~Vilr~GPyi~----- 121 (626)
.|+...+.+.=-+.|++=.++|.+.+-|=.+ ||.+ .+.+|++.|++.| +.|++.+-|-..
T Consensus 139 ~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~ 205 (274)
T cd00537 139 GHPEAPSLEEDIKRLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAK 205 (274)
T ss_pred cCCCCCCHHHHHHHHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHH
Confidence 3333333333233444444569999988443 3444 8999999999998 556777666432
Q ss_pred --eecCCCCCCcccccc-CCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006904 122 --AEWNFGGFPVWLKYV-PGISFRTDNEPFKRAMQGFTEKIVNLMKS 165 (626)
Q Consensus 122 --aEw~~GG~P~WL~~~-p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~ 165 (626)
+++..-++|.|+.+. .. ...+....++.-.++..++++.+.+
T Consensus 206 ~~~~~~Gv~vP~~~~~~l~~--~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 206 RFAKLCGVEIPDWLLERLEK--LKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHhhCCCCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345556689988752 11 1122234456666777777777774
No 182
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=34.79 E-value=1.7e+02 Score=31.25 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 006904 97 DLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPI 176 (626)
Q Consensus 97 dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpI 176 (626)
.+.+.|+.||+.|++|+|-+|- |. |- . . ..++ +..++|.+.|.+.++++.+
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG-----~~--~~-------~--~--~~~~---~~~~~fa~sl~~~~~~~g~-------- 111 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGG-----AN--GH-------V--D--LNHT---AQEDNFVDSIVAIIKEYGF-------- 111 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeC-----CC--Cc-------c--c--cCCH---HHHHHHHHHHHHHHHHhCC--------
Confidence 5788899999999999999862 11 10 0 0 1222 3456788888888886653
Q ss_pred EeecccccccccccccCcccHHHHHHHHHHHHHcCC
Q 006904 177 ILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEMGT 212 (626)
Q Consensus 177 I~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~ 212 (626)
=++.|+=|+......-......|.+.|+++-...+-
T Consensus 112 DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~ 147 (312)
T cd02871 112 DGLDIDLESGSNPLNATPVITNLISALKQLKDHYGP 147 (312)
T ss_pred CeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCC
Confidence 467888888642100001235677777776655543
No 183
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.07 E-value=87 Score=24.27 Aligned_cols=55 Identities=16% Similarity=0.322 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEE
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA 112 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~V 112 (626)
|..-.+.++-+.+.|+|.+.++. +...++....+-|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44566788889999999998876 3333234455555533 4889999999999765
No 184
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=33.87 E-value=1.2e+02 Score=37.68 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=54.9
Q ss_pred eeCCCC---ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeeccc--chHHHHHHHHHHcCcEEEEeeCceeeee
Q 006904 49 IHYPRS---TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGR--YDLVRFIKTIQKAGLYAHLRIGPYVCAE 123 (626)
Q Consensus 49 iHy~R~---~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~--~dL~~fl~la~~~GL~Vilr~GPyi~aE 123 (626)
+|..|+ +.+.-++.++++++.||-+=.+++-|.+..- -+.|.|+-. -|..++++..++.|+++++-+-|+|..|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 344453 5666788999999999987777766665543 334666532 3889999999999999998888888764
No 185
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=33.67 E-value=88 Score=37.15 Aligned_cols=75 Identities=15% Similarity=0.265 Sum_probs=54.3
Q ss_pred ChhhHHHHHHHHHHCCCCEEEe-cee-----cC--ccCCCCceee---------ecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 55 TPDMWEDLIQKAKDGGLDVIET-YVF-----WN--VHEPSPGNYN---------FEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~t-yv~-----Wn--~hEp~~G~yd---------F~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
.+.+|+ -++++|+++|-+ .++ |. .---.-|-|| |....|++++++.|++.||+||+..=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 566774 577899999985 232 43 2112235565 33346999999999999999997732
Q ss_pred --------ceeeeecCCCCCCccc
Q 006904 118 --------PYVCAEWNFGGFPVWL 133 (626)
Q Consensus 118 --------Pyi~aEw~~GG~P~WL 133 (626)
||.-||.+.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 4888999999999888
No 186
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=33.44 E-value=2.2e+02 Score=31.07 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=46.0
Q ss_pred CChhhHHHHHHHHHHCCCCEEEecee----cCccCC----------------------------CCceeeecccchHHHH
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVF----WNVHEP----------------------------SPGNYNFEGRYDLVRF 101 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~----Wn~hEp----------------------------~~G~ydF~G~~dL~~f 101 (626)
.+.+...+.|..|...++|+...++. |.+--+ ..|.|- ..|+..+
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHH
Confidence 37899999999999999999998763 432111 123343 3499999
Q ss_pred HHHHHHcCcEEEEee
Q 006904 102 IKTIQKAGLYAHLRI 116 (626)
Q Consensus 102 l~la~~~GL~Vilr~ 116 (626)
++.|++.|+.||.-+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999775
No 187
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=33.43 E-value=4.1e+02 Score=29.02 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEe
Q 006904 99 VRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIIL 178 (626)
Q Consensus 99 ~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~ 178 (626)
.+++..|+++|+.|++- |++|. +. + .||. .-++|++.+++.++++++ =+
T Consensus 67 ~~~~~~A~~~~v~v~~~-----------~~~~~-----~~--l--~~~~---~R~~fi~siv~~~~~~gf--------DG 115 (358)
T cd02875 67 DELLCYAHSKGVRLVLK-----------GDVPL-----EQ--I--SNPT---YRTQWIQQKVELAKSQFM--------DG 115 (358)
T ss_pred HHHHHHHHHcCCEEEEE-----------CccCH-----HH--c--CCHH---HHHHHHHHHHHHHHHhCC--------Ce
Confidence 57899999999999854 23331 11 1 2443 345789999999997764 24
Q ss_pred ecccccccccccccCcccHHHHHHHHHHHHH
Q 006904 179 SQIENEYGAQSKLLGAAGHNYMTWAAKMAVE 209 (626)
Q Consensus 179 ~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~ 209 (626)
+.|+=||-.... .+....|...++++..+
T Consensus 116 IdIDwE~p~~~~--~~d~~~~t~llkelr~~ 144 (358)
T cd02875 116 INIDIEQPITKG--SPEYYALTELVKETTKA 144 (358)
T ss_pred EEEcccCCCCCC--cchHHHHHHHHHHHHHH
Confidence 566666642110 12235566666665544
No 188
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=33.01 E-value=65 Score=33.44 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=39.7
Q ss_pred CChhhHHHHHHHHHHCCCCEEEeceecC-cc---CCCCceeee-cccchHHHHHHHHHHcCcEEEEeeC
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVFWN-VH---EPSPGNYNF-EGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~Wn-~h---Ep~~G~ydF-~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
.+++.|++..+.+|+.|+..+.|.+.-. +. +...-.|-- ++..+-..+|+.+++.|+-|||-+|
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 6899999999999999999999975421 11 112222222 2444445689999999999999987
No 189
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=32.91 E-value=1.5e+02 Score=31.05 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=57.2
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCCC-ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeec--ccchHHHHH
Q 006904 26 CSVTYDRKALLINGQRRILFSGSIHYPRS-TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE--GRYDLVRFI 102 (626)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~iHy~R~-~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~--G~~dL~~fl 102 (626)
..|... .+.+.+..++++.| +-.. ..+.-.+..+.+|+.|....+.|+|=+...| |.|. |..-|..+-
T Consensus 12 s~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~ 82 (260)
T TIGR01361 12 TVVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLR 82 (260)
T ss_pred CEEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHH
Confidence 445553 35566555667777 2222 5666678888899999998888888754444 3455 456788888
Q ss_pred HHHHHcCcEEEEee
Q 006904 103 KTIQKAGLYAHLRI 116 (626)
Q Consensus 103 ~la~~~GL~Vilr~ 116 (626)
+.|++.||.++-.|
T Consensus 83 ~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 83 RAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHhCCCEEEee
Confidence 89999999988775
No 190
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=32.75 E-value=91 Score=31.61 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=35.0
Q ss_pred HHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 63 l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
..++|++|++.|-+ .|..+| |.-+ |+.+=++.|.++||.+|+++
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 34789999998887 455555 5444 68999999999999999987
No 191
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=32.52 E-value=79 Score=35.43 Aligned_cols=67 Identities=24% Similarity=0.267 Sum_probs=47.0
Q ss_pred CChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEE-EEeeCceeeeecCCCCCC
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA-HLRIGPYVCAEWNFGGFP 130 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~V-ilr~GPyi~aEw~~GG~P 130 (626)
...+.-+..|+.+|+.|+|+|-+++.=.---+.+-.|.= -..|-+..++++.+.|..+ +|.+| ||||
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~ 257 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFP 257 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCC
Confidence 466778889999999999999998654322222222221 1346666778889999985 68886 8886
No 192
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=32.41 E-value=1.6e+02 Score=29.94 Aligned_cols=91 Identities=11% Similarity=0.161 Sum_probs=65.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeec-ccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccc
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE-GRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWL 133 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~-G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 133 (626)
.+.++++.++.++++|+.++.+|..... ....+..+ |..|=..-+++|++.|+ .+ |-|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PP-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CC-----------CCEEEE
Confidence 5788999999999999999999988766 22233333 77888999999999887 22 333344
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHHhcc
Q 006904 134 KYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSEN 167 (626)
Q Consensus 134 ~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~ 167 (626)
--+.+ ..+..+...+..|++.+.+.|+...
T Consensus 112 avD~d----~~~~~~~~~v~~Y~~a~~~~l~~~g 141 (212)
T cd06418 112 AVDFD----ALDDEVTEVILPYFRGWNDALHEAG 141 (212)
T ss_pred EeecC----CCcchhHHHHHHHHHHHHHHHHhcC
Confidence 32222 1223477888899999999998543
No 193
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=32.36 E-value=40 Score=33.82 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=52.0
Q ss_pred CEE-eEEEEEEeeC-CCCChhhHHHHHHHHHHCCCCEEEeceecCccC--------CCCc----eeeecccchHHHHHHH
Q 006904 39 GQR-RILFSGSIHY-PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHE--------PSPG----NYNFEGRYDLVRFIKT 104 (626)
Q Consensus 39 G~~-~~l~sG~iHy-~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hE--------p~~G----~ydF~G~~dL~~fl~l 104 (626)
+++ .++.-|.-+. -|+|.+.|.+.++++++-| ..+.++|.-.| -.++ ..++.|..+|..++.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 444 4444444443 3469999999999999998 55668887766 1223 5889999999999999
Q ss_pred HHHcCcEEEEeeCc
Q 006904 105 IQKAGLYAHLRIGP 118 (626)
Q Consensus 105 a~~~GL~Vilr~GP 118 (626)
.+...+.|-...||
T Consensus 181 i~~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 181 ISRADLVIGNDTGP 194 (247)
T ss_dssp HHTSSEEEEESSHH
T ss_pred HhcCCEEEecCChH
Confidence 99999988888876
No 194
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=32.17 E-value=2.4e+02 Score=25.58 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=40.3
Q ss_pred EEEEEEEeCCCCccccCCCccEEEEeecCcEEEEEECCeEEEEEEcCCCcceEEEEeeeeecCc-cceEEEEEee
Q 006904 473 WYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTREARRFMYTGKVNLRAG-RNKIALLSVA 546 (626)
Q Consensus 473 WY~T~v~~~~~d~~~~~~~~~~L~v~s~gh~lhvFVNg~~~Gs~~g~~~~~~~~~~~~v~L~~G-~N~islLS~t 546 (626)
-++..|....... -++.+.+.+. ..++|||+.+-...+.+. ....-...|.|.+| .+.|.|.-..
T Consensus 47 ~~~g~i~~~~~G~-------y~f~~~~~~~-~~l~Idg~~vid~~~~~~-~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 47 RWTGYLKPPEDGE-------YTFSITSDDG-ARLWIDGKLVIDNWGKHE-ARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EEEEEEECCCCcc-------EEEEEEcCCc-EEEEECCcEEEcCCccCC-CccccceeEEEeCCcEEEEEEEEEe
Confidence 4566666554332 3677766555 579999999987654332 11123346788888 5888887643
No 195
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=32.00 E-value=73 Score=32.80 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=54.8
Q ss_pred eEEEEEEeeCCC-CChhhHHHHHHHHHHCCCCEEEeceecCccCC-----------CCceeeecccchHHHHHHHHHHcC
Q 006904 42 RILFSGSIHYPR-STPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-----------SPGNYNFEGRYDLVRFIKTIQKAG 109 (626)
Q Consensus 42 ~~l~sG~iHy~R-~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp-----------~~G~ydF~G~~dL~~fl~la~~~G 109 (626)
.++..|+-+..| ++.+.|.+.++++++.|+..|-+. .-.|. .+...++.|..+|..++.+.++..
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 333444444444 699999999999998888776443 22221 234568888889999999999999
Q ss_pred cEEEEeeCcee
Q 006904 110 LYAHLRIGPYV 120 (626)
Q Consensus 110 L~Vilr~GPyi 120 (626)
+.+-...||.-
T Consensus 201 l~I~~Dsg~~H 211 (279)
T cd03789 201 LVVTNDSGPMH 211 (279)
T ss_pred EEEeeCCHHHH
Confidence 99888887743
No 196
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=31.75 E-value=51 Score=35.95 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=39.9
Q ss_pred HHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 62 LIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 62 ~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
..+.++++|-++|.+.++|.-.++. .-+-.-..+|.++.+.|+++||-+++-+
T Consensus 111 sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 3678999999999999999955331 0011123389999999999999988863
No 197
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=31.59 E-value=77 Score=31.92 Aligned_cols=67 Identities=22% Similarity=0.211 Sum_probs=39.0
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceee-ecccchHHH-HHHHHHHcCcEEEEeeCceee
Q 006904 51 YPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYN-FEGRYDLVR-FIKTIQKAGLYAHLRIGPYVC 121 (626)
Q Consensus 51 y~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~yd-F~G~~dL~~-fl~la~~~GL~Vilr~GPyi~ 121 (626)
..|+..++--..-+.+||.|+.++-.--.=..|-..+=-|- -.| .+++ .++| +..-++|+||||..|
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KG--EvE~~v~eL--~F~~~~i~RPG~ll~ 171 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKG--EVERDVIEL--DFKHIIILRPGPLLG 171 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccc--hhhhhhhhc--cccEEEEecCcceec
Confidence 34788999999999999999988765333333333221111 111 1111 1111 223578999999766
No 198
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=31.09 E-value=5.6e+02 Score=25.79 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=37.7
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEe
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 115 (626)
....+++.+++++++|++.|+..- .+.+..+ ..++..+.+++++.||.+..-
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~-~~~~~~l~~~l~~~gl~i~~~ 64 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPAD-YKELAELKELLADYGLEITSL 64 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCch-hhhHHHHHHHHHHcCcEEEee
Confidence 345578999999999999999865 1112111 113899999999999988653
No 199
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=30.78 E-value=1.1e+02 Score=32.90 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=46.7
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEeceecCccCC-------------CCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 51 YPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEP-------------SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 51 y~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp-------------~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
.-|+|+|.|.+.++.+++.|+.+| +++.-.|. .+...|..|..+|..+..+.+...++|--..|
T Consensus 196 ~K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDSG 272 (352)
T PRK10422 196 FKCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDSA 272 (352)
T ss_pred ccCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCCH
Confidence 345799999999999988887654 44443321 12346777888888888888888887777766
Q ss_pred c
Q 006904 118 P 118 (626)
Q Consensus 118 P 118 (626)
|
T Consensus 273 p 273 (352)
T PRK10422 273 P 273 (352)
T ss_pred H
Confidence 6
No 200
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=30.67 E-value=3e+02 Score=29.88 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=46.9
Q ss_pred CChhhHHHHHHHHHHCCCCEEEecee----cCccCCC------Cceeeec---ccchHHHHHHHHHHcCcEEEEee
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVF----WNVHEPS------PGNYNFE---GRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~----Wn~hEp~------~G~ydF~---G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+.+..++.|+.|....+|+...++- |.+--+. .|.|.=. -..|+..+++.|++.|+.||.-+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 36899999999999999999998763 5553321 2322211 13499999999999999999774
No 201
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.61 E-value=3.4e+02 Score=28.24 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=50.4
Q ss_pred HHHHHHHHHCCCCEEEeceecCccCCCCceeeec--ccchHHHHHHHHHHcCcEE--EEeeCceeeeecCCCCCCccccc
Q 006904 60 EDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE--GRYDLVRFIKTIQKAGLYA--HLRIGPYVCAEWNFGGFPVWLKY 135 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~--G~~dL~~fl~la~~~GL~V--ilr~GPyi~aEw~~GG~P~WL~~ 135 (626)
++.++.+++.|+++|+.++-. | ..|... ...+..+|.+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~----P--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~--------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKS----P--RWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL--------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecC----c--cccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee---------------
Confidence 568999999999999996531 1 111111 1236788888999998863 33335553
Q ss_pred cCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006904 136 VPGISFRTDNEPFKRAMQGFTEKIVNLMK 164 (626)
Q Consensus 136 ~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~ 164 (626)
+.+=+.|+.-++...+.+.+.++.-+
T Consensus 73 ---iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 ---INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred ---eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12224466666666666666555555
No 202
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=30.50 E-value=92 Score=32.88 Aligned_cols=76 Identities=13% Similarity=0.212 Sum_probs=51.2
Q ss_pred EEeE-EEEEEeeC-CCCChhhHHHHHHHHHHCCCCEEEeceecCcc-CCC--------CceeeecccchHHHHHHHHHHc
Q 006904 40 QRRI-LFSGSIHY-PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVH-EPS--------PGNYNFEGRYDLVRFIKTIQKA 108 (626)
Q Consensus 40 ~~~~-l~sG~iHy-~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~h-Ep~--------~G~ydF~G~~dL~~fl~la~~~ 108 (626)
++++ +..|.-+. -|+|.+.|.+.++.+.+.|+.+| +.+..- |.. ...-+..|..+|..++.+.+..
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~iv---l~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a 254 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIK---LPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGA 254 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEE---EeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhC
Confidence 4444 34454454 45899999999999988887654 333211 110 1135677888899999988888
Q ss_pred CcEEEEeeCc
Q 006904 109 GLYAHLRIGP 118 (626)
Q Consensus 109 GL~Vilr~GP 118 (626)
.++|--..||
T Consensus 255 ~l~I~nDSGp 264 (322)
T PRK10964 255 KAVVSVDTGL 264 (322)
T ss_pred CEEEecCCcH
Confidence 8888777776
No 203
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=30.11 E-value=1.4e+02 Score=31.26 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=40.4
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecc-cchHHHHHHHHHHc-CcEEEEeeCc
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEG-RYDLVRFIKTIQKA-GLYAHLRIGP 118 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G-~~dL~~fl~la~~~-GL~Vilr~GP 118 (626)
.++.|.+..++++++|++.|+..+.=... ...|. .+.+ -+.+.++++.+++. ++-|.++.+|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~-~~~g~-~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNV-KGGGM-AFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCC-CCCcc-cccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 57899999999999999999997542221 11122 1211 23566778888776 6767777654
No 204
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=30.03 E-value=77 Score=37.95 Aligned_cols=55 Identities=31% Similarity=0.439 Sum_probs=41.2
Q ss_pred HHHHHHHCCCCEEEe-ceecCccCCCC---c-eeee----------------cc-----cchHHHHHHHHHHcCcEEEEe
Q 006904 62 LIQKAKDGGLDVIET-YVFWNVHEPSP---G-NYNF----------------EG-----RYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 62 ~l~k~K~~GlN~V~t-yv~Wn~hEp~~---G-~ydF----------------~G-----~~dL~~fl~la~~~GL~Vilr 115 (626)
.|.-+|++|+++|+. +|+.-..|+.. | .|+| ++ .+.+..+|+.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 488999999999996 68766666543 3 2332 22 247888899999999999998
Q ss_pred e
Q 006904 116 I 116 (626)
Q Consensus 116 ~ 116 (626)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 205
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.97 E-value=85 Score=32.21 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHCCCCEEEeceecCccCCCC-ceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSP-GNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~-G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+.+++.|+.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4567889999999999998631100011111 01110 01357888899999999999887
No 206
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=29.83 E-value=49 Score=40.47 Aligned_cols=76 Identities=24% Similarity=0.456 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHHCCCCEEEe------------ceecCccCC------CCceeeecccchHHHHHHHHHH-cCcEEEEe
Q 006904 55 TPDMWEDLIQKAKDGGLDVIET------------YVFWNVHEP------SPGNYNFEGRYDLVRFIKTIQK-AGLYAHLR 115 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~t------------yv~Wn~hEp------~~G~ydF~G~~dL~~fl~la~~-~GL~Vilr 115 (626)
|-+.|+.+|+++|+.|.|+|.. |-.-+.||- .-++|-|+ |+.++++-+++ -++.-|-.
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 6789999999999999999973 333333332 23568888 99999988864 46654433
Q ss_pred eCceeeeecCCC-CCCccccccCCe
Q 006904 116 IGPYVCAEWNFG-GFPVWLKYVPGI 139 (626)
Q Consensus 116 ~GPyi~aEw~~G-G~P~WL~~~p~i 139 (626)
+ + ||.- ---.||.++|+.
T Consensus 217 v---V---~NHtAnns~WlleHPea 235 (1521)
T KOG3625|consen 217 V---V---YNHTANNSKWLLEHPEA 235 (1521)
T ss_pred h---h---hhccccCCchhHhCchh
Confidence 2 0 2221 124577776653
No 207
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=29.68 E-value=83 Score=32.18 Aligned_cols=60 Identities=15% Similarity=-0.041 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+..++.++.++++|..+|.+...+.-....+.+..-.-...|.++.++|++.|+.+.+-|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 447788899999999999874333211111112111112466777888999999999987
No 208
>PRK15492 triosephosphate isomerase; Provisional
Probab=29.49 E-value=1e+02 Score=32.32 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=37.8
Q ss_pred HHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 63 l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
-..+|++|++.|-+ .|..+|..|. +-+..+.+=++.|.++||.+|+++|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 34789999999988 5666666554 2345666678899999999999997
No 209
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=29.44 E-value=2.9e+02 Score=24.95 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=40.4
Q ss_pred EEEEEEEeCCCCccccCCCccEEEEeecCcEEEEEECCeEEEEEEcCCC-----cceEEEEeeeeecCc-cceEEEEEee
Q 006904 473 WYITSVDIGSSESFLHGGELPTLIVQSTGHALHIFINGQLSGSAFGTRE-----ARRFMYTGKVNLRAG-RNKIALLSVA 546 (626)
Q Consensus 473 WY~T~v~~~~~d~~~~~~~~~~L~v~s~gh~lhvFVNg~~~Gs~~g~~~-----~~~~~~~~~v~L~~G-~N~islLS~t 546 (626)
=++..|++..++. -++.+.+.+ ...+||||+.+-...+... .........|.|.+| .+.|.|+-..
T Consensus 49 ~~~G~~~~~~~G~-------y~f~~~~~d-~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 49 RWTGYFKPPETGT-------YTFSLTSDD-GARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEEEEEESSSEE-------EEEEEEESS-EEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEecccCce-------EEEEEEecc-cEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 3556666655442 256666444 5789999999988776432 012344555777765 5888887543
No 210
>PLN02784 alpha-amylase
Probab=28.79 E-value=1.1e+02 Score=37.38 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCCEEEeceecCccCC---CCce-ee----ecccchHHHHHHHHHHcCcEEEEee
Q 006904 60 EDLIQKAKDGGLDVIETYVFWNVHEP---SPGN-YN----FEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~tyv~Wn~hEp---~~G~-yd----F~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+.+.-++++|+++|-..=+-....+ .+.. |+ |....+|.++++.|+++||.||+.+
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44567789999999987533221111 1111 22 3335799999999999999999985
No 211
>PLN02389 biotin synthase
Probab=28.61 E-value=77 Score=35.08 Aligned_cols=50 Identities=12% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEecee--cCccCCCCceeeecccchHHHHHHHHHHcCcEE
Q 006904 60 EDLIQKAKDGGLDVIETYVF--WNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA 112 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~tyv~--Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~V 112 (626)
++.++++|++|++.+..-+- -..+...-..-+|+ +..+.++.|++.||.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
No 212
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=28.57 E-value=99 Score=34.33 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCCEEEe-ceec---CccCCCCce---e--eecccchHHHHHHHHHHcCcEEEEee
Q 006904 61 DLIQKAKDGGLDVIET-YVFW---NVHEPSPGN---Y--NFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 61 d~l~k~K~~GlN~V~t-yv~W---n~hEp~~G~---y--dF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+.|.-+|++|+++|-+ +++= ..|---.-. . .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6778899999999964 3331 122211100 0 57778899999999999999999874
No 213
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=28.27 E-value=1.2e+02 Score=31.83 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=47.7
Q ss_pred CCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHH-HcCcEEEEeeC
Q 006904 52 PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ-KAGLYAHLRIG 117 (626)
Q Consensus 52 ~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~-~~GL~Vilr~G 117 (626)
.+.+.++=.+..+.+-++|++.|++.++-...+...|...|.....+.++.++.+ +..+-+++|++
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 3458888899999999999999999988876666677777774445555555543 44555667765
No 214
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=28.15 E-value=1.1e+02 Score=32.59 Aligned_cols=63 Identities=16% Similarity=0.253 Sum_probs=43.1
Q ss_pred CChhhHHHHHHHHHHCCCCEEEecee----cCccCC------CCceee------ecccchHHHHHHHHHHcCcEEEEee
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVF----WNVHEP------SPGNYN------FEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~----Wn~hEp------~~G~yd------F~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+.+.-++.|..|...++|++..++- |.+.-+ ..|.+. +=-..|+..+++.|++.||.||.-+
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 37888999999999999999998874 443221 122111 1112499999999999999999764
No 215
>PLN03036 glutamine synthetase; Provisional
Probab=28.10 E-value=1.8e+02 Score=32.86 Aligned_cols=67 Identities=24% Similarity=0.445 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeec-cc---------chHHHHH--HHHHHcCcEEEEeeCceeeeec
Q 006904 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE-GR---------YDLVRFI--KTIQKAGLYAHLRIGPYVCAEW 124 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~-G~---------~dL~~fl--~la~~~GL~Vilr~GPyi~aEw 124 (626)
+.-++..+.+.++||++-.+ .||--||||.|. +- ..+-|++ ++|+++|+.+-.-|=|+ -++|
T Consensus 230 ~i~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~-~gd~ 303 (432)
T PLN03036 230 DISDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPI-EGDW 303 (432)
T ss_pred HHHHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcC-CCCc
Confidence 33445566789999998887 799999999886 21 1222333 56899999999888884 3567
Q ss_pred CCCCC
Q 006904 125 NFGGF 129 (626)
Q Consensus 125 ~~GG~ 129 (626)
+.-|.
T Consensus 304 ~GSGm 308 (432)
T PLN03036 304 NGAGC 308 (432)
T ss_pred CCCCc
Confidence 66554
No 216
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=27.98 E-value=1.1e+02 Score=28.87 Aligned_cols=92 Identities=12% Similarity=0.226 Sum_probs=46.8
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeec-ccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccc
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE-GRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWL 133 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~-G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL 133 (626)
.+.+.++.++.++++|+..+.+|.....+.. .....++ |..|=.+-+..|++.|+. . |-|-++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~~-~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRETS-DFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEeccccccc-ccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 4688999999999999999999987722221 1111222 667888899999999882 2 344444
Q ss_pred cccCCeeeecCChhHHHHHHHHHHHHHHHHHhc
Q 006904 134 KYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSE 166 (626)
Q Consensus 134 ~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~ 166 (626)
-- .+-..+..+...+..|++.+.+.|+..
T Consensus 100 av----D~d~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 100 AV----DYDATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp E------TS-B-HH-------HHHHHHHHHGGG
T ss_pred Ee----ecCCCchhhhhHHHHHHHHHHHHHhhC
Confidence 31 112245677788888888888888853
No 217
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=27.85 E-value=74 Score=33.10 Aligned_cols=48 Identities=29% Similarity=0.560 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEE-EeeCceeee
Q 006904 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH-LRIGPYVCA 122 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi-lr~GPyi~a 122 (626)
+.-.+.++++|++|+ -|+.++ +|.+ +-++.|++.|...| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 445667777888887 455544 4543 33778888888866 888888764
No 218
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=27.76 E-value=1e+02 Score=32.24 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=41.7
Q ss_pred EEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 43 ILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 43 ~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.-+++-.++.|.. .++|+.+.+.|++.|++.+..+ +++ .+.+.++.|+++|+.|.+-+
T Consensus 72 ~~~~~~~~~~~~~----~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 72 TKIAVMVDYGNDD----IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred CEEEEEECCCCCC----HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
Confidence 3344445555533 3568888999999999987554 344 78888999999999877654
No 219
>PRK14567 triosephosphate isomerase; Provisional
Probab=27.42 E-value=1.2e+02 Score=31.85 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=37.1
Q ss_pred HHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 64 QKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 64 ~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
.++|+.|++.|-+ .|..++.-|. +-+..+.+=++.|.++||.+|+++|
T Consensus 79 ~mLkd~G~~yvii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 79 RMLEDIGCDYLLI-----GHSERRSLFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHcCCCEEEE-----CcccccCccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4789999998888 4666655554 3345677778899999999999997
No 220
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=27.40 E-value=73 Score=35.25 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=46.0
Q ss_pred CChhhHHHHHHHHHHCCCCEEEecee--cCccCCCCceeeecccchHHHHHHHHHHcCcEE-EEeeCceeeeecCCCCCC
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVF--WNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA-HLRIGPYVCAEWNFGGFP 130 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~--Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~V-ilr~GPyi~aEw~~GG~P 130 (626)
.+++.+++.++.+|+.|++.+-..++ .+...+.. |.= ...+..++++++++.|+.+ +|-+| ||+|
T Consensus 147 i~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~~~--~~~-a~~~~~~~~~~~~~~g~~l~~ldiG---------GGf~ 214 (394)
T cd06831 147 TTLKNCRHLLECAKELDVQIVGVKFHVSSSCKEYQT--YVH-ALSDARCVFDMAEEFGFKMNMLDIG---------GGFT 214 (394)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCHHH--HHH-HHHHHHHHHHHHHHCCCCCCEEEeC---------CCcC
Confidence 58889999999999999998776655 44433332 210 1124466788898888864 68887 8997
Q ss_pred c
Q 006904 131 V 131 (626)
Q Consensus 131 ~ 131 (626)
.
T Consensus 215 ~ 215 (394)
T cd06831 215 G 215 (394)
T ss_pred C
Confidence 3
No 221
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.34 E-value=1.3e+02 Score=27.41 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=41.4
Q ss_pred EEEecCcEEECCEEeEEEEEEe-eC-----CCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHH
Q 006904 28 VTYDRKALLINGQRRILFSGSI-HY-----PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRF 101 (626)
Q Consensus 28 v~~d~~~~~idG~~~~l~sG~i-Hy-----~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~f 101 (626)
+-.+-+.=.|+|.+.+-=-.++ .. .-.+++..++.++.+++.|+..|=.. +| ..-.++
T Consensus 31 ~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~ 94 (116)
T PF13380_consen 31 YPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEEL 94 (116)
T ss_dssp EEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHH
T ss_pred EEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHH
Confidence 3445555566666532222221 00 01589999999999999998876542 12 255888
Q ss_pred HHHHHHcCcEEE
Q 006904 102 IKTIQKAGLYAH 113 (626)
Q Consensus 102 l~la~~~GL~Vi 113 (626)
+++|+++||.++
T Consensus 95 ~~~a~~~gi~vi 106 (116)
T PF13380_consen 95 IEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHTT-EEE
T ss_pred HHHHHHcCCEEE
Confidence 999999999865
No 222
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=27.26 E-value=1.3e+02 Score=31.93 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=52.1
Q ss_pred CEEeEEEE-EE-e-eCCCCChhhHHHHHHHHHHCCCCEEEeceecCc------cCCC-CceeeecccchHHHHHHHHHHc
Q 006904 39 GQRRILFS-GS-I-HYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNV------HEPS-PGNYNFEGRYDLVRFIKTIQKA 108 (626)
Q Consensus 39 G~~~~l~s-G~-i-Hy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~------hEp~-~G~ydF~G~~dL~~fl~la~~~ 108 (626)
+++++.+. |+ . .+-|+|.+.|.+.++.+.+.|+.+|=+.-+=.. .+.. +...|..|..+|..+..+.+..
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a 252 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALA 252 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhC
Confidence 46666554 33 3 456689999999999998888776644322110 0001 1235677777888888888888
Q ss_pred CcEEEEeeCc
Q 006904 109 GLYAHLRIGP 118 (626)
Q Consensus 109 GL~Vilr~GP 118 (626)
.|+|-...||
T Consensus 253 ~l~I~~DSGp 262 (334)
T TIGR02195 253 KAVVTNDSGL 262 (334)
T ss_pred CEEEeeCCHH
Confidence 8877777665
No 223
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=27.25 E-value=2.2e+02 Score=28.36 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=41.5
Q ss_pred EEEEEeeCCCCChhhHHHHHHHHH-HCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 44 LFSGSIHYPRSTPDMWEDLIQKAK-DGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 44 l~sG~iHy~R~~~~~W~d~l~k~K-~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
+..+.+.+.. ++...+.|++.. +.|+-.|..+-... .++.......++++++|+++|+-|++-+|
T Consensus 73 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~Gv~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 73 IGFAAIPPPD--PEDAVEELERALQELGFRGVKLHPDLG-------GFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp EEEEEETTTS--HHHHHHHHHHHHHTTTESEEEEESSET-------TCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred EEEEEecCCC--chhHHHHHHHhccccceeeeEecCCCC-------ccccccHHHHHHHHHHHHhhccceeeecc
Confidence 3444455544 555666666655 99999999764322 22222222226999999999999999987
No 224
>PTZ00333 triosephosphate isomerase; Provisional
Probab=27.10 E-value=1.3e+02 Score=31.64 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=38.9
Q ss_pred HHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 64 QKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 64 ~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
+.+|++|++.|-+ .|..++.-|. +.+..+.+=++.|.++||.+|+++|
T Consensus 83 ~mL~d~G~~~vii-----GHSERR~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTIL-----GHSERRQYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEE-----CcccccCcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 5789999999988 5666666553 3356888889999999999999997
No 225
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=26.58 E-value=1e+02 Score=32.01 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=32.0
Q ss_pred EECCEEeEEEEEEeeCCCC-ChhhHHHHHHHHHHCCCCEEE
Q 006904 36 LINGQRRILFSGSIHYPRS-TPDMWEDLIQKAKDGGLDVIE 75 (626)
Q Consensus 36 ~idG~~~~l~sG~iHy~R~-~~~~W~d~l~k~K~~GlN~V~ 75 (626)
.+.|++.+.+.|..|+-.. ...+-+--++-||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 4679999999999996544 555557789999999998764
No 226
>PRK14566 triosephosphate isomerase; Provisional
Probab=26.18 E-value=1.3e+02 Score=31.69 Aligned_cols=49 Identities=27% Similarity=0.231 Sum_probs=37.3
Q ss_pred HHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 63 l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
-+++|++|++.|-+ .|..++..|. +-+..+.+=++.|.++||.+|+++|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII-----GHSERRRMYG-ETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34789999998887 4666655544 2345567788899999999999997
No 227
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.04 E-value=3.3e+02 Score=28.05 Aligned_cols=101 Identities=11% Similarity=0.073 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHHCCCCEEEecee-c---CccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCC
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVF-W---NVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFP 130 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~-W---n~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P 130 (626)
+++.=....+.+++.|+....+-.. + ++..+.+...+- ....+.+.+++|++.|..+|.-+|. ..+
T Consensus 50 ~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~-~~~~~~~~i~~a~~lG~~~v~~~~~---------~~~ 119 (279)
T TIGR00542 50 SREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQ-GLEIMEKAIQLARDLGIRTIQLAGY---------DVY 119 (279)
T ss_pred CHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHH-HHHHHHHHHHHHHHhCCCEEEecCc---------ccc
Confidence 4555556667789999998765321 1 122222221111 1236889999999999987743220 000
Q ss_pred ccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc
Q 006904 131 VWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENE 184 (626)
Q Consensus 131 ~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENE 184 (626)
++ ..++.-++.+.+.++++++..++++ |-+.+||.
T Consensus 120 ------~~----~~~~~~~~~~~~~l~~l~~~A~~~G---------v~l~lE~~ 154 (279)
T TIGR00542 120 ------YE----EHDEETRRRFREGLKEAVELAARAQ---------VTLAVEIM 154 (279)
T ss_pred ------cC----cCCHHHHHHHHHHHHHHHHHHHHcC---------CEEEEeeC
Confidence 01 1124445666777888888888543 34567775
No 228
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=25.53 E-value=6e+02 Score=25.71 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEeceecCccCCCCc-eeeec-ccchHHHHHHHHHHcCcEEEEeeCceeeeecCCC-CCCcccccc
Q 006904 60 EDLIQKAKDGGLDVIETYVFWNVHEPSPG-NYNFE-GRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFG-GFPVWLKYV 136 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G-~ydF~-G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~G-G~P~WL~~~ 136 (626)
++.++.|+++|+|++.+ | .-.|+ |..-|.+.++.++++|+ |++++--+.. ..|.-+.+.
T Consensus 63 ~~~~~~l~~~G~d~~~l-----------aNNH~fD~G~~gl~~t~~~l~~a~i-------~~~g~~~~~~~~~~~~i~~~ 124 (239)
T smart00854 63 PENAAALKAAGFDVVSL-----------ANNHSLDYGEEGLLDTLAALDAAGI-------AHVGAGRNLAEARKPAIVEV 124 (239)
T ss_pred HHHHHHHHHhCCCEEEe-----------ccCcccccchHHHHHHHHHHHHCCC-------CEeeCCCChHHhhCcEEEEE
Q ss_pred CCeee----------------------ecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCc
Q 006904 137 PGISF----------------------RTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGA 194 (626)
Q Consensus 137 p~i~~----------------------Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~ 194 (626)
.++++ ...++...+.++++++++-+. . ++ -|++.+.-.||..
T Consensus 125 ~g~kIg~ig~t~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~lr~~-~--D~------vIv~~H~G~e~~~------- 188 (239)
T smart00854 125 KGIKIALLAYTYGTNNGWAASKDRPGVALLPDLDREKILADIARARKK-A--DV------VIVSLHWGVEYQY------- 188 (239)
T ss_pred CCEEEEEEEEEcCCCCCcccCCCCCCeeecCcCCHHHHHHHHHHHhcc-C--CE------EEEEecCccccCC-------
Q ss_pred ccHHHHHHHHHHHHHcCCCc
Q 006904 195 AGHNYMTWAAKMAVEMGTGV 214 (626)
Q Consensus 195 ~~~~Y~~~l~~~~~~~g~~v 214 (626)
....+.+.+++.+.+.|+++
T Consensus 189 ~p~~~~~~~A~~l~~~G~Dv 208 (239)
T smart00854 189 EPTDEQRELAHALIDAGADV 208 (239)
T ss_pred CCCHHHHHHHHHHHHcCCCE
No 229
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=25.34 E-value=59 Score=34.29 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=42.4
Q ss_pred HHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 63 l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
-+++|+.|-+.|-.-|.|..-||+-.+-+ ..-+++|..+|..+||-.+|-|
T Consensus 117 a~riK~~G~~avK~Lvy~~~D~~e~neqk---~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYYRSDEDEINEQK---LAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred HHHHHHhcccceEEEEEEcCCchHHhHHH---HHHHHHHHHHhhhcCCceeEee
Confidence 46789999999999999999999333322 2368999999999999999887
No 230
>PRK07094 biotin synthase; Provisional
Probab=25.22 E-value=66 Score=34.18 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCCEEEecee---cCccCCCCceeeecccchHHHHHHHHHHcCcEE
Q 006904 60 EDLIQKAKDGGLDVIETYVF---WNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYA 112 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~tyv~---Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~V 112 (626)
++.++++|++|++.|...+- -..++.......++ +..+.++.++++|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 45677788888887765331 12222221223444 7778888999999865
No 231
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=25.14 E-value=52 Score=25.50 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=10.0
Q ss_pred EEEEEECCeEEE
Q 006904 503 ALHIFINGQLSG 514 (626)
Q Consensus 503 ~lhvFVNg~~~G 514 (626)
+=||||||+.+=
T Consensus 20 I~~V~VNG~~vv 31 (48)
T PF07908_consen 20 IDYVFVNGQIVV 31 (48)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEEEECCEEEE
Confidence 568999999873
No 232
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.02 E-value=2.1e+02 Score=30.81 Aligned_cols=60 Identities=8% Similarity=0.111 Sum_probs=46.9
Q ss_pred CChhhHHHHHHHHHHCCCCEEEece----ecCccCC---C---Cc----eeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYV----FWNVHEP---S---PG----NYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv----~Wn~hEp---~---~G----~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+.+..++.|+.|...++|+..-++ -|.+--+ + .| .|- ..|+..+++.|++.|+.||.-+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 4799999999999999999999987 4754211 1 22 232 3499999999999999999775
No 233
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=24.89 E-value=4.2e+02 Score=29.85 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred ECCEEeEEEEEEeeCCCC---ChhhHHHHHHHHHHCCCC----EEEeceecCccCCCCceeeecccchHHHHHHHHHHcC
Q 006904 37 INGQRRILFSGSIHYPRS---TPDMWEDLIQKAKDGGLD----VIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAG 109 (626)
Q Consensus 37 idG~~~~l~sG~iHy~R~---~~~~W~d~l~k~K~~GlN----~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~G 109 (626)
+++.-+.+|.+.-+-++. +++.-+...+.+++.|++ ++.....-|+-.|.+..++++ ..-+.+-|+.|.+.|
T Consensus 153 ~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA~~LG 231 (413)
T PTZ00372 153 IAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRCEQLG 231 (413)
T ss_pred cCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHHHHcC
Q ss_pred cE-EEEeeCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccc
Q 006904 110 LY-AHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIEN 183 (626)
Q Consensus 110 L~-Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIEN 183 (626)
.. |++-|| .........+..+++.+.|-+.++ ...|..|++ ||
T Consensus 232 a~~VV~HPG-----------------------s~~~~~~~ee~i~~i~e~L~~~la------~~~gV~IlL--EN 275 (413)
T PTZ00372 232 IKLYNFHPG-----------------------STVGQCSKEEGIKNIADCINKAHE------ETKSVIIVL--EN 275 (413)
T ss_pred CCEEEECCC-----------------------cCCCCCCHHHHHHHHHHHHHHHHh------CcCCCEEEE--ec
No 234
>PF14958 DUF4506: Domain of unknown function (DUF4506)
Probab=24.86 E-value=2.3e+02 Score=27.02 Aligned_cols=53 Identities=17% Similarity=0.390 Sum_probs=39.9
Q ss_pred cEEEEeecCcEEEEEEC--CeEEEEEEcCCC------cceEEEEeeeeecCccc--eEEEEEe
Q 006904 493 PTLIVQSTGHALHIFIN--GQLSGSAFGTRE------ARRFMYTGKVNLRAGRN--KIALLSV 545 (626)
Q Consensus 493 ~~L~v~s~gh~lhvFVN--g~~~Gs~~g~~~------~~~~~~~~~v~L~~G~N--~islLS~ 545 (626)
..|.|-|.+-.+=||+. ++|.|+.+|..- ...-.|.+.++|..+.+ +|-+||-
T Consensus 29 ~si~I~SeAR~~EvY~g~~~EY~~T~rGe~v~~~~~~~~~~lY~~~l~le~~~~~~~iK~lSl 91 (138)
T PF14958_consen 29 ASIGIVSEARNMEVYVGQSEEYCGTSRGELVDEDSEEENIILYKKDLKLESPTSECKIKFLSL 91 (138)
T ss_pred EEEEEEEccCEEEEEECCCCceeeEcCcEEecCCCccccceEEEEEEEcCCCccEEEEEEEec
Confidence 35788899999999998 999999998532 23455777788888776 5556664
No 235
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=24.76 E-value=2.6e+02 Score=29.53 Aligned_cols=75 Identities=21% Similarity=0.347 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCCh----hHHHHHHHH-------HHHHHHHHHh
Q 006904 97 DLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNE----PFKRAMQGF-------TEKIVNLMKS 165 (626)
Q Consensus 97 dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~----~yl~~~~~~-------~~~i~~~l~~ 165 (626)
...++++.|++.|-.++|-|- -.-||.|.|... ++.+-+.++ .|+++-... +++|+..-+
T Consensus 38 K~~~~~~Eaa~~Ga~LV~fPE------AfiGGYPrg~~F--g~~~G~r~~eGR~ef~kY~a~AIev~gpEv~~l~~la~- 108 (337)
T KOG0805|consen 38 KAEKYIVEAASKGAELVLFPE------AFIGGYPRGFRF--GLAVGVRNEEGRDEFRKYHASAIEVPGPEVERLAELAK- 108 (337)
T ss_pred HHHHHHHHHhcCCceEEEeeh------HhccCCCCccee--eEEEeecchhhhHHHHHHHHHhhcCCChHHHHHHHHhh-
Confidence 467889999999999999984 455999999874 233333333 344443332 234444444
Q ss_pred cccccccCCceEeecccccc
Q 006904 166 ENLFESQGGPIILSQIENEY 185 (626)
Q Consensus 166 ~~l~~~~gGpII~~QIENEy 185 (626)
.+.=.++|--||.|=
T Consensus 109 -----~~~v~lv~G~iEreg 123 (337)
T KOG0805|consen 109 -----KNNVYLVMGAIEREG 123 (337)
T ss_pred -----cCCeEEEEEEEeccc
Confidence 233356666788873
No 236
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=24.71 E-value=67 Score=25.45 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=18.4
Q ss_pred CceEEEEEeCCCCceEEEEEC--------C----eEEeeCCceEEEc
Q 006904 371 GDCAAFLSNYDTKSAARVLFN--------N----MHYNLPPWSISVL 405 (626)
Q Consensus 371 ~~~~~Fl~N~~~~~~~~V~f~--------~----~~y~lp~~svsIl 405 (626)
+..+.|+-|+.++. .+|++. | ..++|||+.|.|+
T Consensus 11 ~~~y~F~~N~s~~~-~~v~l~~~~~dll~g~~~~~~~~L~p~~v~Vl 56 (58)
T PF08533_consen 11 GGRYLFLLNFSDEP-QTVTLPESYTDLLTGETVSGGLTLPPYGVRVL 56 (58)
T ss_dssp ETTEEEEEE-SSS--EE----TT-EEEES-------SEE-TTEEEEE
T ss_pred CCEEEEEEECCCCC-EEEEcCCCceecccCcceeeEEEECCCEEEEE
Confidence 45688999988653 344432 1 2478888888876
No 237
>PRK14565 triosephosphate isomerase; Provisional
Probab=24.70 E-value=1.4e+02 Score=31.01 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=34.3
Q ss_pred HHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 63 l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
.+++|++|++.+-+ .|..++--|+=+ +..+.+=++.|.++||.+|+++|
T Consensus 78 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999998887 465555444322 22333334889999999999997
No 238
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.62 E-value=1.6e+02 Score=29.02 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=38.1
Q ss_pred EEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEe
Q 006904 47 GSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 47 G~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 115 (626)
..+|.- .++.| .+++++++|.+.|.+..... ...+.++++.|+++|+.+++-
T Consensus 57 ~d~k~~--d~~~~--~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 57 ADLKTM--DAGEY--EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEEeec--cchHH--HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 345543 44433 68899999999999864431 136789999999999998875
No 239
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=24.51 E-value=2.1e+02 Score=30.35 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=45.0
Q ss_pred CChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeec---ccchHHHHHHHHHHcCcEEEEee
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFE---GRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~---G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
.+-+.-+.-+.-+.+.|+.-|-+-.-|...+ ....+||+ ...||.++++-|++.|+-|+|+.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY 93 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE
Confidence 3677788999999999999999988898722 23456666 34699999999999999998884
No 240
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=24.44 E-value=1.7e+02 Score=33.63 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=44.6
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEe
Q 006904 51 YPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 51 y~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 115 (626)
|..+|.+.-+..++++.+.|+++|+++.+-|.. +++...++.+++.|..+..-
T Consensus 91 y~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv------------~nl~~ai~~vk~ag~~~~~~ 143 (499)
T PRK12330 91 YRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP------------RNLEHAMKAVKKVGKHAQGT 143 (499)
T ss_pred ccCcchhHHHHHHHHHHHcCCCEEEEEecCChH------------HHHHHHHHHHHHhCCeEEEE
Confidence 555677888889999999999999998877655 58999999999999987443
No 241
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=24.43 E-value=1e+02 Score=35.96 Aligned_cols=41 Identities=24% Similarity=0.215 Sum_probs=32.4
Q ss_pred EEEEEECCeEEEEEEcCCC---cceEEEEeeeeecCccceEEEE
Q 006904 503 ALHIFINGQLSGSAFGTRE---ARRFMYTGKVNLRAGRNKIALL 543 (626)
Q Consensus 503 ~lhvFVNg~~~Gs~~g~~~---~~~~~~~~~v~L~~G~N~islL 543 (626)
.|-|+|||+.+|+..=..+ ...+++..|..|..|.|+|.|=
T Consensus 64 ~L~V~lNg~~v~s~~l~~~~~~~~~~~i~Ip~~l~~g~N~l~~~ 107 (605)
T PF03170_consen 64 QLTVSLNGQPVGSIPLDAESAQPQTVTIPIPPALIKGFNRLTFE 107 (605)
T ss_pred eEEEEECCEEeEEEecCcCCCCceEEEEecChhhcCCceEEEEE
Confidence 5899999999999863222 3467788877899999999884
No 242
>PLN02429 triosephosphate isomerase
Probab=24.23 E-value=1.4e+02 Score=32.44 Aligned_cols=49 Identities=16% Similarity=0.024 Sum_probs=32.2
Q ss_pred HHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 63 l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
.+.+|+.|++.|-+ .|..++-.|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHVIGEK-DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCCCCcC-HHHHHHHHHHHHHCcCEEEEEcC
Confidence 34678899988877 455555544311 22233333449999999999997
No 243
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=24.22 E-value=3.9e+02 Score=29.45 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=55.8
Q ss_pred eeEEEecCcEEECCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecc--cchHHHHHH
Q 006904 26 CSVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEG--RYDLVRFIK 103 (626)
Q Consensus 26 ~~v~~d~~~~~idG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G--~~dL~~fl~ 103 (626)
..|.. ..+.+.|...+++.|..-- -..+.-.+.-+.+|+.|+..++-..|= |+.--|.|.| ...+..+.+
T Consensus 105 ~~~~~--~~~~~g~~~~~~iaGpc~i--E~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~~ 176 (360)
T PRK12595 105 TIVDV--KGEVIGDGNQSFIFGPCSV--ESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILKQ 176 (360)
T ss_pred CEEEE--CCEEecCCCeeeEEecccc--cCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHHH
Confidence 44555 3366665444456665110 146667778888999999999976555 4433356664 467888889
Q ss_pred HHHHcCcEEEEee
Q 006904 104 TIQKAGLYAHLRI 116 (626)
Q Consensus 104 la~~~GL~Vilr~ 116 (626)
.|++.||.++-.|
T Consensus 177 ~~~~~Gl~~~t~v 189 (360)
T PRK12595 177 VADEYGLAVISEI 189 (360)
T ss_pred HHHHcCCCEEEee
Confidence 9999999988775
No 244
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=24.13 E-value=1.4e+02 Score=31.67 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=48.9
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEeceecCcc--C-----------CCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 51 YPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVH--E-----------PSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 51 y~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~h--E-----------p~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
+-|+|.|.|.+.++++.+-|+.+|=+ +.-. | +.+...|+.|..+|..++.+++...++|--..|
T Consensus 194 ~K~Wp~e~~~~l~~~l~~~~~~ivl~---g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSG 270 (344)
T TIGR02201 194 FKCWDNDRFSALIDALHARGYEVVLT---SGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSV 270 (344)
T ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEe---cCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCH
Confidence 45579999999999998878776543 3311 1 223468889999999999998888888877777
Q ss_pred c
Q 006904 118 P 118 (626)
Q Consensus 118 P 118 (626)
|
T Consensus 271 p 271 (344)
T TIGR02201 271 P 271 (344)
T ss_pred H
Confidence 6
No 245
>PRK09739 hypothetical protein; Provisional
Probab=24.08 E-value=1.9e+02 Score=28.44 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=46.9
Q ss_pred EEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCc-cCCCCceee---ec-----ccchHHHHHHHHHHcCc
Q 006904 40 QRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNV-HEPSPGNYN---FE-----GRYDLVRFIKTIQKAGL 110 (626)
Q Consensus 40 ~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~-hEp~~G~yd---F~-----G~~dL~~fl~la~~~GL 110 (626)
.+.+++.|+.+..+.+...=+..++.+++.|.++....+ ... ..|..+.-+ |. -..++++.++...+++.
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL-YRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDA 82 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh-hhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCE
Confidence 467888888766555677777778888988854433222 221 112221111 11 12478999999999999
Q ss_pred EEEEee
Q 006904 111 YAHLRI 116 (626)
Q Consensus 111 ~Vilr~ 116 (626)
.|+.=|
T Consensus 83 iV~~~P 88 (199)
T PRK09739 83 LVFVFP 88 (199)
T ss_pred EEEECc
Confidence 888665
No 246
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=24.03 E-value=1.1e+02 Score=30.89 Aligned_cols=60 Identities=13% Similarity=-0.025 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 57 DMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 57 ~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+.+++.++.++++|..+|.+...+.--++..-+..-.-...+.++.+.|++.|+.+.+-+
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 667888999999999999864322100000001000112357888899999999998886
No 247
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=23.97 E-value=1.5e+02 Score=32.22 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=35.6
Q ss_pred HHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 61 DLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 61 d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+.|+++.+.|++.|++.+..+.. ..+...++.|+++|+.|..-+
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~------------~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA------------DVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH------------HHHHHHHHHHHHCCCeEEEEE
Confidence 56899999999999998755532 157899999999999887654
No 248
>PLN02561 triosephosphate isomerase
Probab=23.72 E-value=1.5e+02 Score=31.16 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=37.4
Q ss_pred HHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 63 l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
.+.+|++|++.|-+ .|..++..|. +-+..+.+=++.|.++||.+|+++|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL-----GHSERRALLG-ESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccC-CChHHHHHHHHHHHHCcCEEEEEcC
Confidence 45789999998887 4666555543 2345677778889999999999997
No 249
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=23.63 E-value=88 Score=33.96 Aligned_cols=53 Identities=28% Similarity=0.400 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcE--EE-Eee
Q 006904 58 MWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLY--AH-LRI 116 (626)
Q Consensus 58 ~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~--Vi-lr~ 116 (626)
.|++.+.+++..|| +|++.-+--..|..|+.|. |+.+.+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 6788888889999999986 899999999999996 33 665
No 250
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=23.62 E-value=1.9e+02 Score=27.39 Aligned_cols=82 Identities=16% Similarity=0.308 Sum_probs=46.1
Q ss_pred CEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEecee-cCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 39 GQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVF-WNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 39 G~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~-Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
++|.+++ +|-.-.....|+..++.++ .|+++|..-.. ....+..+..++++. ..+.+.+++++.+..-+.-.|
T Consensus 12 ~~~~li~---~hg~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~--~~~~~~~~i~~~~~~~v~liG 85 (251)
T TIGR02427 12 GAPVLVF---INSLGTDLRMWDPVLPALT-PDFRVLRYDKRGHGLSDAPEGPYSIED--LADDVLALLDHLGIERAVFCG 85 (251)
T ss_pred CCCeEEE---EcCcccchhhHHHHHHHhh-cccEEEEecCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHhCCCceEEEE
Confidence 5676666 4666677889988888886 47887776543 444333344555552 223334445555543122222
Q ss_pred ceeeeecCCCCCCcc
Q 006904 118 PYVCAEWNFGGFPVW 132 (626)
Q Consensus 118 Pyi~aEw~~GG~P~W 132 (626)
+..||.-.+
T Consensus 86 ------~S~Gg~~a~ 94 (251)
T TIGR02427 86 ------LSLGGLIAQ 94 (251)
T ss_pred ------eCchHHHHH
Confidence 456776444
No 251
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=23.47 E-value=1.9e+02 Score=33.94 Aligned_cols=53 Identities=26% Similarity=0.346 Sum_probs=43.4
Q ss_pred CCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEe
Q 006904 51 YPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 51 y~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 115 (626)
|...|.+.-+..+++++++|++.|++..+.|.. +++...++.|+++|+.|..-
T Consensus 85 ~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 85 YRHYADDVVERFVKKAVENGMDVFRIFDALNDP------------RNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred cccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCEEEEE
Confidence 444566667788999999999999999887752 47999999999999987654
No 252
>PF10435 BetaGal_dom2: Beta-galactosidase, domain 2; InterPro: IPR018954 This is the second domain of the five-domain beta-galactosidase enzyme that altogether catalyses the hydrolysis of beta(1-3) and beta(1-4) galactosyl bonds in oligosaccharides as well as the inverse reaction of enzymatic condensation and trans-glycosylation. This domain is made up of 16 antiparallel beta-strands and an alpha-helix at its C terminus. The fold of this domain appears to be unique. In addition, the last seven strands of the domain form a subdomain with an immunoglobulin-like (I-type Ig) fold in which the first strand is divided between the two beta-sheets. In penicillin spp this strand is interrupted by a 12-residue insertion which forms an additional edge-strand to the second beta-sheet of the sub-domain. The remainder of the second domain forms a series of beta-hairpins at its N terminus, four strands of which are contiguous with part of the Ig-like sub-domain, forming in total a seven-stranded antiparallel beta-sheet. This domain is associated with IPR001944 from INTERPRO, which is N-terminal to it, but itself has no metazoan members. ; GO: 0004565 beta-galactosidase activity; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A.
Probab=23.29 E-value=3e+02 Score=27.40 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=24.0
Q ss_pred cCCCceeeEEee---cCCCceEEEEEeCCCCceEEEEEC------CeEEeeCC
Q 006904 356 SLGGFQQAHVYS---SESGDCAAFLSNYDTKSAARVLFN------NMHYNLPP 399 (626)
Q Consensus 356 ~lg~~~e~~~y~---~~~~~~~~Fl~N~~~~~~~~V~f~------~~~y~lp~ 399 (626)
...++....++. +++++.|.++.+.+......+.|. ..+++||.
T Consensus 13 ~~t~~~~i~vt~l~np~t~a~Fyvvrh~~~~s~~~~~f~l~v~Ts~G~~tiPq 65 (183)
T PF10435_consen 13 VYTSNSAIFVTHLRNPDTGAGFYVVRHNDSTSTASTSFTLNVNTSDGTLTIPQ 65 (183)
T ss_dssp SSCS-TTEEEEEEE-STTS-EEEEEEESSTT--S-EEE-EEEEETTEEEEE-T
T ss_pred eecCCCCEEEEEeeCCCCCcEEEEEEccCCCCCCceEEEEEeecCCeeEEecc
Confidence 334455566665 466788999988665544433333 67888884
No 253
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.18 E-value=3.5e+02 Score=20.79 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=39.0
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCce----eeec--ccchHHHHHHHHHHcCcEEE
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGN----YNFE--GRYDLVRFIKTIQKAGLYAH 113 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~----ydF~--G~~dL~~fl~la~~~GL~Vi 113 (626)
.|....+.++.+.+.|+|.+++...=...+-.+|. +.++ +..++..+++..++.|..|.
T Consensus 8 ~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 8 RPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 45567889999999999999875431111111333 3333 33577899999999997653
No 254
>PF11261 IRF-2BP1_2: Interferon regulatory factor 2-binding protein zinc finger; InterPro: IPR022750 IRF-2BP1 and IRF-2BP2 are nuclear transcriptional repressor proteins and can inhibit both enhancer-activated and basal transcription. They both contain N-terminal zinc finger and C-terminal RING finger domains []. This entry represents the N-terminal zinc finger domain of IRF-2BP1 and IRF-2BP2.
Probab=23.08 E-value=44 Score=26.55 Aligned_cols=30 Identities=27% Similarity=0.581 Sum_probs=26.0
Q ss_pred ecCccCCC-CceeeecccchHHHHHHHHHHc
Q 006904 79 FWNVHEPS-PGNYNFEGRYDLVRFIKTIQKA 108 (626)
Q Consensus 79 ~Wn~hEp~-~G~ydF~G~~dL~~fl~la~~~ 108 (626)
.|...||. +|-.||+|...++..|+.|+..
T Consensus 19 i~df~EpVCRgCvNyEGaDrIe~vie~arq~ 49 (54)
T PF11261_consen 19 IWDFSEPVCRGCVNYEGADRIELVIESARQL 49 (54)
T ss_pred HhhccchhhhhhcCcccchhHHHHHHHHHHH
Confidence 47789997 8999999999999999988764
No 255
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=23.05 E-value=69 Score=31.30 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHc-CcEEEEeeCceeeeec---CCCCCCccccccC
Q 006904 96 YDLVRFIKTIQKA-GLYAHLRIGPYVCAEW---NFGGFPVWLKYVP 137 (626)
Q Consensus 96 ~dL~~fl~la~~~-GL~Vilr~GPyi~aEw---~~GG~P~WL~~~p 137 (626)
..+.+|++.++++ |-.++|=.++...... .....|.|+-+.+
T Consensus 103 ~~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~lWiA~Y~ 148 (184)
T cd06525 103 DYVLRFIEEFEKLSGLKVGIYTYTSFINNNLDSRLSSYPLWIANYG 148 (184)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecHHHHHHhccccccCCCeEEEecc
Confidence 4678899999988 9888887777443221 1234577886543
No 256
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.89 E-value=2.7e+02 Score=22.02 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHCCCCEEEeceecCccCCCCc--eeeecccchHHHHHHHHHHcCcEEE
Q 006904 56 PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPG--NYNFEGRYDLVRFIKTIQKAGLYAH 113 (626)
Q Consensus 56 ~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G--~ydF~G~~dL~~fl~la~~~GL~Vi 113 (626)
|..-.+.++-+.+.|+|..+++..= ..++... .+..++ .+.+++++..++.|..|+
T Consensus 12 pG~l~~i~~~l~~~~inI~~i~~~~-~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 12 PGQLADIAAIFKDRGVNIVSVLVYP-SKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEEec-cCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 3455678888999999999998641 1112222 445554 466799999999997654
No 257
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.71 E-value=1.6e+02 Score=30.89 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 63 l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
..++|++|++.|-+ .|..++-.|+=+ +..+.+=++.|+++||..||++|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 34688999998887 455544444322 33456778899999999999987
No 258
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=22.63 E-value=1.6e+02 Score=31.92 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=35.3
Q ss_pred HHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 61 DLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 61 d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+.|+++.+.|++.|++.++.+.. ..+...++.+++.|+.|..-+
T Consensus 91 ~dl~~a~~~gvd~iri~~~~~e~------------d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVATHCTEA------------DVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHHHHHHCCCCEEEEEeccchH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 56899999999999988754432 157899999999999887554
No 259
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=22.40 E-value=89 Score=31.55 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=45.5
Q ss_pred eeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 49 iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+..++.+.+.....++.+.++|.+.|.+.+.....+ ..... .++.++.++|++.|+.+|+..
T Consensus 68 i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~---~~~~~---~~i~~v~~~~~~~g~~~iie~ 129 (235)
T cd00958 68 LSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEE---EREML---EELARVAAEAHKYGLPLIAWM 129 (235)
T ss_pred CCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCch---HHHHH---HHHHHHHHHHHHcCCCEEEEE
Confidence 334478888888889999999999997766654221 11122 378889999999999998854
No 260
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=22.34 E-value=72 Score=34.44 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=31.5
Q ss_pred HHHHHHHHHCCCCEEE-ec--eec-C-ccCCCCceeeecccchHHHHHHHHHHcCcEEE
Q 006904 60 EDLIQKAKDGGLDVIE-TY--VFW-N-VHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAH 113 (626)
Q Consensus 60 ~d~l~k~K~~GlN~V~-ty--v~W-n-~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vi 113 (626)
++.++++|++|++.+- +. ++- . .+.-.|+...++ +..+.++.|+++||.+.
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v~ 196 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPTT 196 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCccc
Confidence 6789999999999874 10 000 0 001123333333 55788999999999763
No 261
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=22.33 E-value=5.7e+02 Score=22.90 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=33.2
Q ss_pred ccEEEEeec--CcEEEEEEC---CeEEEEEEc----CCCcceEEEEeeeeecCccceEEEEE
Q 006904 492 LPTLIVQST--GHALHIFIN---GQLSGSAFG----TREARRFMYTGKVNLRAGRNKIALLS 544 (626)
Q Consensus 492 ~~~L~v~s~--gh~lhvFVN---g~~~Gs~~g----~~~~~~~~~~~~v~L~~G~N~islLS 544 (626)
...+++.+. +-.+.+.+| |+.+++..= ..+.. -+++.+|++..|.|.|-+.-
T Consensus 56 ~i~~~~as~~~~~~i~v~~d~~~G~~~~~~~~p~tg~~~~~-~~~~~~v~~~~G~~~l~~~~ 116 (129)
T smart00606 56 TFTARVASGNAGGSIELRLDSPTGTLVGTVDVPSTGGWQTY-QTVSATVTLPAGVHDVYLVF 116 (129)
T ss_pred EEEEEEeCCCCCceEEEEECCCCCcEEEEEEeCCCCCCccC-EEEEEEEccCCceEEEEEEE
Confidence 345666554 347899998 788887642 22221 13556778888888887654
No 262
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.15 E-value=5.7e+02 Score=28.20 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=53.6
Q ss_pred cEEEC-CEEeEEEEEEeeCCCC--ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecc--cchHHHHHHHHHHc
Q 006904 34 ALLIN-GQRRILFSGSIHYPRS--TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEG--RYDLVRFIKTIQKA 108 (626)
Q Consensus 34 ~~~id-G~~~~l~sG~iHy~R~--~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G--~~dL~~fl~la~~~ 108 (626)
.+.+. ++|++++.| |-+ .++.-.+.-+.+|+.|...++-+.|= |+---|.|.| ..-|.-+-+.+++.
T Consensus 93 ~v~iGg~~~l~vIAG----PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp~sf~G~g~~gl~~L~~~~~e~ 164 (352)
T PRK13396 93 PVPFGENHPVVVVAG----PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSPYAFQGHGESALELLAAAREAT 164 (352)
T ss_pred CeEecCCCeEEEEEe----CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCCcccCCchHHHHHHHHHHHHHc
Confidence 45555 466788888 333 67778888899999999999977665 4433467765 34555566678899
Q ss_pred CcEEEEee
Q 006904 109 GLYAHLRI 116 (626)
Q Consensus 109 GL~Vilr~ 116 (626)
||.++-.+
T Consensus 165 Gl~~~tev 172 (352)
T PRK13396 165 GLGIITEV 172 (352)
T ss_pred CCcEEEee
Confidence 99888665
No 263
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=22.12 E-value=3.5e+02 Score=28.17 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=45.5
Q ss_pred EEeEEEEEEeeCCCCC-------------hhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHH
Q 006904 40 QRRILFSGSIHYPRST-------------PDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQ 106 (626)
Q Consensus 40 ~~~~l~sG~iHy~R~~-------------~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~ 106 (626)
-+.+++..++-|++.. .++.++.++++++.|.|+|=+ -|+. + +..++++.
T Consensus 87 ~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~--~k~I----------~-----~~a~~~l~ 149 (261)
T cd03334 87 PRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILV--EKSV----------S-----RIAQDLLL 149 (261)
T ss_pred CcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE--CCcc----------C-----HHHHHHHH
Confidence 4688999999998853 555677899999999998854 1222 1 34578888
Q ss_pred HcCcEEEEeeC
Q 006904 107 KAGLYAHLRIG 117 (626)
Q Consensus 107 ~~GL~Vilr~G 117 (626)
++|+.++-|+.
T Consensus 150 k~gI~~v~~v~ 160 (261)
T cd03334 150 EAGITLVLNVK 160 (261)
T ss_pred HCCCEEEEecC
Confidence 99999888863
No 264
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=22.01 E-value=3.3e+02 Score=28.65 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=61.4
Q ss_pred HHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeCceeeeecCCCCCCccccccCCeeeecCCh
Q 006904 67 KDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNE 146 (626)
Q Consensus 67 K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~ 146 (626)
-...+++|.. +|-...+ .|.. .+. ...++++.|+++|++|++.+|= |..|++-.-.. .. + ..|+
T Consensus 22 ~~~~lt~v~p--~w~~~~~-~g~~--~~~-~~~~~~~~a~~~~~kv~~~i~~-----~~~~~~~~~~~--~~--~-l~~~ 85 (313)
T cd02874 22 NAPYLTYIAP--FWYGVDA-DGTL--TGL-PDERLIEAAKRRGVKPLLVITN-----LTNGNFDSELA--HA--V-LSNP 85 (313)
T ss_pred hcCCCCEEEE--EEEEEcC-CCCC--CCC-CCHHHHHHHHHCCCeEEEEEec-----CCCCCCCHHHH--HH--H-hcCH
Confidence 4456777664 2433333 3443 332 4478999999999999999852 22222100000 00 0 1233
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcccHHHHHHHHHHHHHc
Q 006904 147 PFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAAGHNYMTWAAKMAVEM 210 (626)
Q Consensus 147 ~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~ 210 (626)
. ..++|++.|++.++++++ =++.|+=|+... .....|...|+++...+
T Consensus 86 ~---~r~~fi~~iv~~l~~~~~--------DGidiDwE~~~~-----~d~~~~~~fl~~lr~~l 133 (313)
T cd02874 86 E---ARQRLINNILALAKKYGY--------DGVNIDFENVPP-----EDREAYTQFLRELSDRL 133 (313)
T ss_pred H---HHHHHHHHHHHHHHHhCC--------CcEEEecccCCH-----HHHHHHHHHHHHHHHHh
Confidence 2 346789999999997764 133444455321 23455777777666554
No 265
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=21.96 E-value=1.7e+02 Score=31.79 Aligned_cols=67 Identities=16% Similarity=0.360 Sum_probs=47.3
Q ss_pred CEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 39 GQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 39 G~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
|++.+++.|..-+.+. ..+++..+.+++.|+++. .+...||.|- .+ ++++.++.+++.+..+|+-+|
T Consensus 25 g~r~lvVt~~~~~~~~--g~~~~v~~~L~~~g~~~~----~~~~v~~~p~---~~---~v~~~~~~~~~~~~D~IIavG 91 (357)
T cd08181 25 GKRALIVTGKSSAKKN--GSLDDVTKALEELGIEYE----IFDEVEENPS---LE---TIMEAVEIAKKFNADFVIGIG 91 (357)
T ss_pred CCEEEEEeCCchHhhc--CcHHHHHHHHHHcCCeEE----EeCCCCCCcC---HH---HHHHHHHHHHhcCCCEEEEeC
Confidence 5788888776544332 234566677888898632 2355666652 33 799999999999999999997
No 266
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=21.80 E-value=2e+02 Score=33.90 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=44.2
Q ss_pred eeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEe
Q 006904 49 IHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 49 iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr 115 (626)
..|..+|.+.-+..++++.++|++.|++..+-|.. +++...++.|+++|+.|..-
T Consensus 88 ~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~~ 142 (592)
T PRK09282 88 VGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV------------RNMEVAIKAAKKAGAHVQGT 142 (592)
T ss_pred cccccccchhhHHHHHHHHHCCCCEEEEEEecChH------------HHHHHHHHHHHHcCCEEEEE
Confidence 34545567777788999999999999998876653 48999999999999987644
No 267
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=21.75 E-value=1.7e+02 Score=32.16 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=37.1
Q ss_pred CCEEeEEEEEEeeCC---------------------CCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccc
Q 006904 38 NGQRRILFSGSIHYP---------------------RSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRY 96 (626)
Q Consensus 38 dG~~~~l~sG~iHy~---------------------R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~ 96 (626)
.+++.++.|.+.||. |+..+.-++.|++.++.|..-+ .|.=..=...-|.+|
T Consensus 139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~--~vvat~Gtt~~Ga~D----- 211 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPF--AVVATAGTTNTGAID----- 211 (373)
T ss_dssp CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEE--EEEEEBS-TTTSBB------
T ss_pred ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccce--eeeccCCCccccccc-----
Confidence 456778888888872 3344445555555566665321 122223334444444
Q ss_pred hHHHHHHHHHHcCcEEEEe
Q 006904 97 DLVRFIKTIQKAGLYAHLR 115 (626)
Q Consensus 97 dL~~fl~la~~~GL~Vilr 115 (626)
||.++.++|+++++++.+.
T Consensus 212 ~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 212 PLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp SHHHHHHHHHHCT-EEEEE
T ss_pred CHHHHhhhccccceeeeec
Confidence 6777777777766665554
No 268
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=21.55 E-value=1.9e+02 Score=28.73 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=48.9
Q ss_pred EeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCC--CCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 41 RRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEP--SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 41 ~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp--~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
++++++|+.+....+...-+..++.+++.|..+....+. . ..+ ..+. ++ +.-++.++++..++++..|+.-|
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~-~-l~~~~~~~~-~~-~~~~~~~~~~~i~~AD~iIi~tP 75 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQ-N-FAPEDLLYA-RF-DSPALKTFTEQLAQADGLIVATP 75 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEcc-C-CChHHHHhc-cC-CCHHHHHHHHHHHHCCEEEEECC
Confidence 467889988876667777778888888899776654432 1 111 0110 11 12389999999999998888776
No 269
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.42 E-value=2.6e+02 Score=31.67 Aligned_cols=73 Identities=15% Similarity=0.332 Sum_probs=52.0
Q ss_pred ecCcEEECCEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEecee----cCccC---C------------------
Q 006904 31 DRKALLINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVF----WNVHE---P------------------ 85 (626)
Q Consensus 31 d~~~~~idG~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~----Wn~hE---p------------------ 85 (626)
..|.|+||=-| |+ .+.+.-++.|+.|-...+|+...++- |.+-- |
T Consensus 6 ~~RGlmLDvaR--------~f--~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~ 75 (445)
T cd06569 6 EYRGMHLDVAR--------NF--HSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTC 75 (445)
T ss_pred cccceeeeccC--------CC--CCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccc
Confidence 34566666443 33 38999999999999999999998873 53211 0
Q ss_pred --------------CCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 86 --------------SPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 86 --------------~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
..|.|- ..|+..+++.|++.|+.||.-+
T Consensus 76 ~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 76 LLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred cccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 012222 3599999999999999999764
No 270
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=21.41 E-value=3.3e+02 Score=32.66 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=44.2
Q ss_pred CCChhhHHHHHHHHHHCCCCEEEeceecC---ccCCCCce---eeec-c-cchHHHHHHHHHHcCcEEEE
Q 006904 53 RSTPDMWEDLIQKAKDGGLDVIETYVFWN---VHEPSPGN---YNFE-G-RYDLVRFIKTIQKAGLYAHL 114 (626)
Q Consensus 53 R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn---~hEp~~G~---ydF~-G-~~dL~~fl~la~~~GL~Vil 114 (626)
.++++.-++-|+-+|+.|+++|+.--.-. ...+.|+. .-|+ | .......+.+.+++|+...+
T Consensus 68 ~Vspe~Fe~qL~~Lk~nGY~~ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s~yt~A~PILkkygvpATf 137 (671)
T PRK14582 68 SVRTSALREQFAWLRENGYQPVSVAQILEAHRGGKPLPEKAVLLTFDDGYSSFYTRVFPILQAFQWPAVW 137 (671)
T ss_pred ccCHHHHHHHHHHHHHCcCEEccHHHHHHHHhcCCCCCCCeEEEEEEcCCCchHHHHHHHHHHcCCCEEE
Confidence 35788899999999999999999865432 22344442 2455 3 23567788999999998654
No 271
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=21.20 E-value=1.4e+02 Score=26.90 Aligned_cols=58 Identities=31% Similarity=0.398 Sum_probs=45.1
Q ss_pred CChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcE
Q 006904 54 STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLY 111 (626)
Q Consensus 54 ~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~ 111 (626)
-+++.-++.|.-+.+.|--++.+-|.=..--+..|..+-+-++|+++|++..++..-.
T Consensus 5 H~~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~~~~~ 62 (98)
T PF02829_consen 5 HTPDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEKSKAK 62 (98)
T ss_dssp --GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH--S-
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhccCCc
Confidence 3678889999999999999999877766666888999999999999999999987554
No 272
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.13 E-value=2.2e+02 Score=29.77 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=50.0
Q ss_pred EEeEEEEEEeeC-CCCChhhHHHHHHHHHHCCCCEEEeceecCcc-C---------CCCceeeecccchHHHHHHHHHHc
Q 006904 40 QRRILFSGSIHY-PRSTPDMWEDLIQKAKDGGLDVIETYVFWNVH-E---------PSPGNYNFEGRYDLVRFIKTIQKA 108 (626)
Q Consensus 40 ~~~~l~sG~iHy-~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~h-E---------p~~G~ydF~G~~dL~~fl~la~~~ 108 (626)
+-+++.-|.-+. -|+|++.|.+.++.+.+.|+..|=+ +..- | ..++. +..|..+|..++.+++..
T Consensus 180 ~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~---~g~~~e~~~~~~i~~~~~~~-~l~g~~sL~el~ali~~a 255 (319)
T TIGR02193 180 PYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLP---WGNDAEKQRAERIAEALPGA-VVLPKMSLAEVAALLAGA 255 (319)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEe---CCCHHHHHHHHHHHhhCCCC-eecCCCCHHHHHHHHHcC
Confidence 334444454454 4479999999999997767766532 3211 1 11233 677888899999988888
Q ss_pred CcEEEEeeCc
Q 006904 109 GLYAHLRIGP 118 (626)
Q Consensus 109 GL~Vilr~GP 118 (626)
.+.|--..||
T Consensus 256 ~l~I~~DSgp 265 (319)
T TIGR02193 256 DAVVGVDTGL 265 (319)
T ss_pred CEEEeCCChH
Confidence 8887777766
No 273
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=21.13 E-value=2.1e+02 Score=31.28 Aligned_cols=67 Identities=16% Similarity=0.369 Sum_probs=48.9
Q ss_pred CEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 39 GQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 39 G~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
|++.+++.|.... + ....+++..+.+++.|+++. .+...+|.|- .+ ++++.++++++.+..+|+-+|
T Consensus 25 g~r~livt~~~~~-~-~~g~~~~v~~~L~~~~~~~~----~~~~v~~~p~---~~---~v~~~~~~~~~~~~D~IiavG 91 (380)
T cd08185 25 GKKALIVTGNGSS-K-KTGYLDRVIELLKQAGVEVV----VFDKVEPNPT---TT---TVMEGAALAREEGCDFVVGLG 91 (380)
T ss_pred CCeEEEEeCCCch-h-hccHHHHHHHHHHHcCCeEE----EeCCccCCCC---HH---HHHHHHHHHHHcCCCEEEEeC
Confidence 5788888876542 1 13567777778889999753 2355666554 33 789999999999999999997
No 274
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=21.07 E-value=66 Score=33.39 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=36.2
Q ss_pred HHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 63 IQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 63 l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
.+++|+.|++.|-+ .|..++--|+ +.+..+.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 77 AEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 45789999998887 3544443333 3456889999999999999999997
No 275
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=21.03 E-value=2.5e+02 Score=28.12 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=39.5
Q ss_pred EEEEeeCCCCChhh--HHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHc-CcEEE-EeeCc
Q 006904 45 FSGSIHYPRSTPDM--WEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKA-GLYAH-LRIGP 118 (626)
Q Consensus 45 ~sG~iHy~R~~~~~--W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~-GL~Vi-lr~GP 118 (626)
+=++.|.+..+|+. +.+.+++|++.|.++|..-+. +. +.+....|.+|++.+++. +..+| +..|+
T Consensus 116 iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~-----~~----~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~ 184 (224)
T PF01487_consen 116 IILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVM-----AN----SPEDVLRLLRFTKEFREEPDIPVIAISMGE 184 (224)
T ss_dssp EEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE------S----SHHHHHHHHHHHHHHHHHTSSEEEEEEETG
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEec-----cC----CHHHHHHHHHHHHHHhhccCCcEEEEEcCC
Confidence 44679977765555 889999999999999987432 11 223233455566666654 57765 55665
No 276
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=20.75 E-value=5.4e+02 Score=28.63 Aligned_cols=137 Identities=15% Similarity=0.210 Sum_probs=75.5
Q ss_pred EEeEEEEEEeeCCC---CChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHH-HHHHHHHcCcEEEEe
Q 006904 40 QRRILFSGSIHYPR---STPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVR-FIKTIQKAGLYAHLR 115 (626)
Q Consensus 40 ~~~~l~sG~iHy~R---~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~-fl~la~~~GL~Vilr 115 (626)
.-++++.++.|.|. .++|.|++..+.+|+-.+=-+-- =.+.-.. +|..|-++ -++++.+.|..++|.
T Consensus 198 gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffD---mAYQGfa------SG~~d~DA~avR~F~~~g~~~~la 268 (427)
T KOG1411|consen 198 GSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFD---MAYQGFA------SGDLDKDAQAVRLFVEDGHEILLA 268 (427)
T ss_pred CcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhh---hhhcccc------cCCchhhHHHHHHHHHcCCceEee
Confidence 55899999999998 58999999999999865421110 0111111 25445554 457777777777665
Q ss_pred eCceeeeecCCCCCCccccccCCeeeecCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccccccccCcc
Q 006904 116 IGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVNLMKSENLFESQGGPIILSQIENEYGAQSKLLGAA 195 (626)
Q Consensus 116 ~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~yl~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~ 195 (626)
= -|. .|=|+ +--++-.+.+-++++.--.+++.=++.| ++ +++ + ..||-+.||-|..=. .
T Consensus 269 Q-SyA----KNMGL--YgERvGa~svvc~~ad~A~rV~SQlk~l---iR--pmY-S-nPP~hGArIv~~Il~-------d 327 (427)
T KOG1411|consen 269 Q-SYA----KNMGL--YGERVGALSVVCKDADEAKRVESQLKIL---IR--PMY-S-NPPLHGARIVATILS-------D 327 (427)
T ss_pred h-hhh----hhcch--hhhccceeEEEecCHHHHHHHHHHHHHH---hc--ccc-c-CCCccchhhhhhccC-------C
Confidence 2 010 00000 0001122334456665445554444444 33 432 2 369999999887643 2
Q ss_pred cHHHHHHHHHH
Q 006904 196 GHNYMTWAAKM 206 (626)
Q Consensus 196 ~~~Y~~~l~~~ 206 (626)
..-+-+|++++
T Consensus 328 ~~l~~~W~~ev 338 (427)
T KOG1411|consen 328 PDLKNQWLGEV 338 (427)
T ss_pred hHHHHHHHHHH
Confidence 34455565554
No 277
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=20.69 E-value=71 Score=35.55 Aligned_cols=68 Identities=24% Similarity=0.414 Sum_probs=53.0
Q ss_pred EECCEEeEEEEEEeeCCCC-ChhhHHHHHHHHHHCC--CCEEEeceecCccCCCCceeeeccc-chHHHHHHHHHHcCcE
Q 006904 36 LINGQRRILFSGSIHYPRS-TPDMWEDLIQKAKDGG--LDVIETYVFWNVHEPSPGNYNFEGR-YDLVRFIKTIQKAGLY 111 (626)
Q Consensus 36 ~idG~~~~l~sG~iHy~R~-~~~~W~d~l~k~K~~G--lN~V~tyv~Wn~hEp~~G~ydF~G~-~dL~~fl~la~~~GL~ 111 (626)
++||-+ +-.++.+.++. +.+.-++.|++.+..| -..|-| +|.|-.+|. .+|.++.++|+++|.+
T Consensus 136 iidG~r--ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt----------egVfSMdGdiApL~~l~~L~~ky~a~ 203 (388)
T COG0156 136 IIDGIR--LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT----------EGVFSMDGDIAPLPELVELAEKYGAL 203 (388)
T ss_pred HHHHHH--hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE----------eccccCCCCcCCHHHHHHHHHHhCcE
Confidence 777877 56677776665 6677888888876554 344443 799999997 8999999999999988
Q ss_pred EEEe
Q 006904 112 AHLR 115 (626)
Q Consensus 112 Vilr 115 (626)
+++.
T Consensus 204 L~VD 207 (388)
T COG0156 204 LYVD 207 (388)
T ss_pred EEEE
Confidence 8877
No 278
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=20.58 E-value=1.8e+02 Score=30.08 Aligned_cols=61 Identities=26% Similarity=0.444 Sum_probs=43.1
Q ss_pred ChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecc-----c-----chHHHHH--HHHHHcCcEEEEeeCcee
Q 006904 55 TPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEG-----R-----YDLVRFI--KTIQKAGLYAHLRIGPYV 120 (626)
Q Consensus 55 ~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G-----~-----~dL~~fl--~la~~~GL~Vilr~GPyi 120 (626)
..+..++.++.+.++|+++-.. +||-.||||...= . .-+.+++ ++|+++|+.+..-|=|+.
T Consensus 67 ~~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 67 GEDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp THHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 4666788999999999998887 7999999998651 1 1222222 568899999999887753
No 279
>PRK00870 haloalkane dehalogenase; Provisional
Probab=20.26 E-value=2.1e+02 Score=29.43 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=40.9
Q ss_pred CEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCC---ceeeecccchHHHHHHHHHHcCc
Q 006904 39 GQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSP---GNYNFEGRYDLVRFIKTIQKAGL 110 (626)
Q Consensus 39 G~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~---G~ydF~G~~dL~~fl~la~~~GL 110 (626)
|++.+++.| .-.....|...++.+.+.|+++|..-..--.....+ ..|+|+. ..+...+++++.++
T Consensus 46 ~~~lvliHG----~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~~~--~a~~l~~~l~~l~~ 114 (302)
T PRK00870 46 GPPVLLLHG----EPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTYAR--HVEWMRSWFEQLDL 114 (302)
T ss_pred CCEEEEECC----CCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCHHH--HHHHHHHHHHHcCC
Confidence 456666666 334667899988888888999999877755443322 3466652 22233344455565
No 280
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=20.19 E-value=1.8e+02 Score=30.12 Aligned_cols=44 Identities=20% Similarity=0.140 Sum_probs=35.9
Q ss_pred HHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEee
Q 006904 61 DLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRI 116 (626)
Q Consensus 61 d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~ 116 (626)
+.++++++.|++.|+.+++-+.. ..+.+.++.|++.|+.|.+-+
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~------------~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA------------DVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH------------HHHHHHHHHHHHCCCeEEEEE
Confidence 66889999999999998876632 267889999999999877654
No 281
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=20.10 E-value=1.8e+02 Score=31.40 Aligned_cols=65 Identities=11% Similarity=0.232 Sum_probs=43.6
Q ss_pred CEEeEEEEEEeeCCCCChhhHHHHHHHHHHCCCCEEEeceecCccCCCCceeeecccchHHHHHHHHHHcCcEEEEeeC
Q 006904 39 GQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGLDVIETYVFWNVHEPSPGNYNFEGRYDLVRFIKTIQKAGLYAHLRIG 117 (626)
Q Consensus 39 G~~~~l~sG~iHy~R~~~~~W~d~l~k~K~~GlN~V~tyv~Wn~hEp~~G~ydF~G~~dL~~fl~la~~~GL~Vilr~G 117 (626)
|++.++++|..-+ ...+++..+.+++.|++++.. ...+++| ..+ ++++.++++++.+..+|+-+|
T Consensus 22 ~~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~----~~~~~~p---~~~---~v~~~~~~~~~~~~d~iiavG 86 (345)
T cd08171 22 GKKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDF----IWYGGES---TYE---NVERLKKNPAVQEADMIFAVG 86 (345)
T ss_pred CCEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEE----EecCCCC---CHH---HHHHHHHHHhhcCCCEEEEeC
Confidence 5778888776443 234666667778889875432 2233333 233 788889999999998888886
Done!