BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006905
         (626 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
           Methyltransferase-Related Protein (Tm1389) From
           Thermotoga Maritima Msb8 At 2.35 A Resolution
 pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
           Methyltransferase-Related Protein (Tm1389) From
           Thermotoga Maritima Msb8 At 2.35 A Resolution
          Length = 260

 Score = 38.9 bits (89), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 215 AIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSR 274
            +D G G   W  +L  R    +   P    +  ++ A E+GV  ++    AE LP+PS 
Sbjct: 58  VLDLGGGTGKWSLFLQERGFEVVLVDP---SKEXLEVAREKGVKNVVEA-KAEDLPFPSG 113

Query: 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWI 310
           AF+       ++ + +       E+ RVL P G  I
Sbjct: 114 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLI 149


>pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The
           Uroporphyrinogen-Iii Decarboxylase From Nicotiana
           Tabacum: Implications For The Catalytic Mechanism
          Length = 353

 Score = 33.5 bits (75), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 529 YPRTYDLIHADSVFSLYKDRCETEDILLEMD----RILRPEGGVIFRDDVDELVKVKRII 584
           Y ++Y L+     + L++DR E  D+++E+     ++ RP+G ++F D +  L  +    
Sbjct: 38  YMKSYQLLCEK--YPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDILTPLSGMNIPF 95

Query: 585 DALKWQSQIV 594
           D +K +  ++
Sbjct: 96  DIIKGKGPVI 105


>pdb|3GB9|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant
           E201q,n243d Complexed With 2-fluoroadenine
 pdb|3GB9|B Chain B, Human Purine Nucleoside Phosphorylase Double Mutant
           E201q,n243d Complexed With 2-fluoroadenine
 pdb|3GB9|C Chain C, Human Purine Nucleoside Phosphorylase Double Mutant
           E201q,n243d Complexed With 2-fluoroadenine
 pdb|3GGS|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant
           E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
 pdb|3GGS|B Chain B, Human Purine Nucleoside Phosphorylase Double Mutant
           E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
 pdb|3GGS|C Chain C, Human Purine Nucleoside Phosphorylase Double Mutant
           E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
          Length = 311

 Score = 32.7 bits (73), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 266 AERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGW 325
            +R P  S A+D     R L  W Q G        R L+ G Y +++GP        R  
Sbjct: 178 GDRFPAMSDAYDRTMRQRALSTWKQMG------EQRELQEGTYVMVAGPSFQTVAECRVL 231

Query: 326 QRTKEDLNKEQTAIENVAKSLCWEKI 351
           Q+   D     T  E +    C  ++
Sbjct: 232 QKLGADAVGMSTVPEVIVARHCGLRV 257


>pdb|2A0Y|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257d
           Mutant
 pdb|2OC4|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
           Mutant H257d With Imm-H
          Length = 289

 Score = 32.7 bits (73), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 266 AERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGW 325
            +R P  S A+D     R L  W Q G        R L+ G Y +++GP        R  
Sbjct: 156 GDRFPAMSDAYDRTMRQRALSTWKQMG------EQRELQEGTYVMVAGPSFETVAECRVL 209

Query: 326 QRTKEDLNKEQTAIENVAKSLCWEKI 351
           Q+   D     T  E +    C  ++
Sbjct: 210 QKLGADAVGMSTVPEVIVARHCGLRV 235


>pdb|2A0W|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257g
           Mutant
 pdb|2OC9|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
           Mutant H257g With Imm-H
          Length = 289

 Score = 32.7 bits (73), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 266 AERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGW 325
            +R P  S A+D     R L  W Q G        R L+ G Y +++GP        R  
Sbjct: 156 GDRFPAMSDAYDRTMRQRALSTWKQMG------EQRELQEGTYVMVAGPSFETVAECRVL 209

Query: 326 QRTKEDLNKEQTAIENVAKSLCWEKI 351
           Q+   D     T  E +    C  ++
Sbjct: 210 QKLGADAVGMSTVPEVIVARHCGLRV 235


>pdb|3PHB|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Dadme-Immg
 pdb|3PHB|Q Chain Q, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Dadme-Immg
 pdb|3PHB|S Chain S, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Dadme-Immg
 pdb|3PHB|T Chain T, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Dadme-Immg
 pdb|3PHB|U Chain U, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Dadme-Immg
 pdb|3PHB|Y Chain Y, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Dadme-Immg
          Length = 324

 Score = 32.7 bits (73), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 266 AERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGW 325
            +R P  S A+D     R L  W Q G        R L+ G Y +++GP        R  
Sbjct: 191 GDRFPAMSDAYDRTMRQRALSTWKQMG------EQRELQEGTYVMVAGPSFETVAECRVL 244

Query: 326 QRTKEDLNKEQTAIENVAKSLCWEKI 351
           Q+   D     T  E +    C  ++
Sbjct: 245 QKLGADAVGMSTVPEVIVARHCGLRV 270


>pdb|1M73|E Chain E, Crystal Structure Of Human Pnp At 2.3a Resolution
 pdb|1RCT|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           Complexed With Inosine
 pdb|1V2H|E Chain E, Crystal Structure Of Human Pnp Complexed With Guanine
 pdb|1V3Q|E Chain E, Structure Of Human Pnp Complexed With Ddi
 pdb|1PWY|E Chain E, Crystal Structure Of Human Pnp Complexed With Acyclovir
 pdb|1RFG|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           Complexed With Guanosine
 pdb|1V41|E Chain E, Crystal Structure Of Human Pnp Complexed With 8-Azaguanine
 pdb|1V45|E Chain E, Crystal Structure Of Human Pnp Complexed With
           3-Deoxyguanosine
          Length = 288

 Score = 32.7 bits (73), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 266 AERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGW 325
            +R P  S A+D     R L  W Q G        R L+ G Y +++GP        R  
Sbjct: 155 GDRFPAMSDAYDRTMRQRALSTWKQMG------EQRELQEGTYVMVAGPSFETVAECRVL 208

Query: 326 QRTKEDLNKEQTAIENVAKSLCWEKI 351
           Q+   D     T  E +    C  ++
Sbjct: 209 QKLGADAVGMSTVPEVIVARHCGLRV 234


>pdb|2A0X|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257f
           Mutant
 pdb|2ON6|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
           Mutant H257f With Imm-H
          Length = 289

 Score = 32.7 bits (73), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 266 AERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGW 325
            +R P  S A+D     R L  W Q G        R L+ G Y +++GP        R  
Sbjct: 156 GDRFPAMSDAYDRTMRQRALSTWKQMG------EQRELQEGTYVMVAGPSFETVAECRVL 209

Query: 326 QRTKEDLNKEQTAIENVAKSLCWEKI 351
           Q+   D     T  E +    C  ++
Sbjct: 210 QKLGADAVGMSTVPEVIVARHCGLRV 235


>pdb|1PF7|E Chain E, Crystal Structure Of Human Pnp Complexed With Immucillin H
 pdb|1RR6|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
           Complex With Immucillin-H And Phosphate
 pdb|1RSZ|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
           Complex With Dadme-Immucillin-H And Sulfate
 pdb|1RT9|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
           Complex With Immucillin-H And Sulfate
 pdb|1YRY|E Chain E, Crystal Structure Of Human Pnp Complexed With Mesg
 pdb|1ULA|A Chain A, Application Of Crystallographic And Modeling Methods In
           The Design Of Purine Nucleoside Phosphorylase Inhibitors
 pdb|1ULB|A Chain A, Application Of Crystallographic And Modeling Methods In
           The Design Of Purine Nucleoside Phosphorylase Inhibitors
 pdb|3BGS|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase With L-
           Dadme-Immh And Phosphate
 pdb|2Q7O|E Chain E, Structure Of Human Purine Nucleoside Phosphorylase In
           Complex With L- Immucillin-H
 pdb|3D1V|A Chain A, Crystal Structure Of Human Pnp Complexed With
           2-Mercapto(3h) Quinazolinone
 pdb|3K8O|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Datme-Immh
 pdb|3K8O|Q Chain Q, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Datme-Immh
 pdb|3K8O|S Chain S, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Datme-Immh
 pdb|3K8O|T Chain T, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Datme-Immh
 pdb|3K8O|U Chain U, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Datme-Immh
 pdb|3K8O|Y Chain Y, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Datme-Immh
 pdb|3K8Q|A Chain A, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With Serme-Immucillin H
 pdb|3INY|A Chain A, Crystal Structure Of Human Purine Nucleoside Phosphorylase
           In Complex With 7-Deazaguanine
          Length = 289

 Score = 32.7 bits (73), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 266 AERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGW 325
            +R P  S A+D     R L  W Q G        R L+ G Y +++GP        R  
Sbjct: 156 GDRFPAMSDAYDRTMRQRALSTWKQMG------EQRELQEGTYVMVAGPSFETVAECRVL 209

Query: 326 QRTKEDLNKEQTAIENVAKSLCWEKI 351
           Q+   D     T  E +    C  ++
Sbjct: 210 QKLGADAVGMSTVPEVIVARHCGLRV 235


>pdb|1SH0|A Chain A, Crystal Structure Of Norwalk Virus Polymerase (Triclinic)
 pdb|1SH0|B Chain B, Crystal Structure Of Norwalk Virus Polymerase (Triclinic)
 pdb|1SH2|A Chain A, Crystal Structure Of Norwalk Virus Polymerase (metal-free,
           Centered Orthorhombic)
 pdb|1SH3|A Chain A, Crystal Structure Of Norwalk Virus Polymerase (Mgso4
           Crystal Form)
 pdb|1SH3|B Chain B, Crystal Structure Of Norwalk Virus Polymerase (Mgso4
           Crystal Form)
          Length = 510

 Score = 32.7 bits (73), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 28/110 (25%)

Query: 534 DLIHADSVFSLY-KDRCETEDILLEMDRI--------LRP------EGGVIFRDDVDELV 578
           D+I A+S+FS Y  D   + DI L+ +++        L+P      EG ++  +D++ L 
Sbjct: 330 DIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLT 389

Query: 579 KVKRII--DALKWQSQIVDHEDGPLEREKLLFAVKLYWT-APAEETASES 625
            ++R +  D   W         G LE+  +L   ++YWT  P  E  SE+
Sbjct: 390 FLRRTVTRDPAGWF--------GKLEQSSIL--RQMYWTRGPNHEDPSET 429


>pdb|2B43|A Chain A, Crystal Structure Of The Norwalk Virus Rna Dependent Rna
           Polymerase From Strain HuNLVDRESDEN1741997GE
 pdb|2B43|B Chain B, Crystal Structure Of The Norwalk Virus Rna Dependent Rna
           Polymerase From Strain HuNLVDRESDEN1741997GE
 pdb|2B43|C Chain C, Crystal Structure Of The Norwalk Virus Rna Dependent Rna
           Polymerase From Strain HuNLVDRESDEN1741997GE
 pdb|2B43|D Chain D, Crystal Structure Of The Norwalk Virus Rna Dependent Rna
           Polymerase From Strain HuNLVDRESDEN1741997GE
          Length = 526

 Score = 32.7 bits (73), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 28/110 (25%)

Query: 534 DLIHADSVFSLY-KDRCETEDILLEMDRI--------LRP------EGGVIFRDDVDELV 578
           D+I A+S+FS Y  D   + DI L+ +++        L+P      EG ++  +D++ L 
Sbjct: 331 DIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLT 390

Query: 579 KVKRII--DALKWQSQIVDHEDGPLEREKLLFAVKLYWT-APAEETASES 625
            ++R +  D   W         G LE+  +L   ++YWT  P  E  SE+
Sbjct: 391 FLRRTVTRDPAGWF--------GKLEQSSIL--RQMYWTRGPNHEDPSET 430


>pdb|3BSN|A Chain A, Norwalk Virus Polymerase Bound To 5-Nitrocytidine
           Triphosphate And Primer-Template Rna
 pdb|3BSO|A Chain A, Norwalk Virus Polymerase Bound To Cytidine 5'-Triphosphate
           And Primer- Template Rna
 pdb|3H5X|A Chain A, Crystal Structure Of
           2'-Amino-2'-Deoxy-Cytidine-5'-Triphosphate Bound To
           Norovirus Gii Rna Polymerase
 pdb|3H5Y|A Chain A, Norovirus Polymerase+primerTEMPLATE+CTP COMPLEX AT 6 MM
           MNCL2
          Length = 510

 Score = 32.7 bits (73), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 28/110 (25%)

Query: 534 DLIHADSVFSLY-KDRCETEDILLEMDRI--------LRP------EGGVIFRDDVDELV 578
           D+I A+S+FS Y  D   + DI L+ +++        L+P      EG ++  +D++ L 
Sbjct: 330 DIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLT 389

Query: 579 KVKRII--DALKWQSQIVDHEDGPLEREKLLFAVKLYWT-APAEETASES 625
            ++R +  D   W         G LE+  +L   ++YWT  P  E  SE+
Sbjct: 390 FLRRTVTRDPAGWF--------GKLEQSSIL--RQMYWTRGPNHEDPSET 429


>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
 pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
          Length = 227

 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 32/208 (15%)

Query: 446 NSELWKKRLSYYKTMNNQLGQSGRYR-NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKI 504
           NS+ ++ R+   +T+   L +  + R  +LD+   +GGF+  L D+   V+ V  +E  I
Sbjct: 17  NSQEYRSRI---ETLEPLLXKYXKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDXI 73

Query: 505 NTLGVIYE--RGLVGTYTNWCEAMSTYPRTYD-LIHADSVFSLYKDRCETEDILLEMDRI 561
                  +     V         +S   +T+D +I  DS+  ++ +  E   +  E+ R+
Sbjct: 74  RKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI--VHFEPLELNQVFKEVRRV 131

Query: 562 LRPEGGVI-FRDDVDEL---VKVKRIIDALKWQSQIV-DHEDGPLERE--------KLLF 608
           L+P G  I +  D+ EL   +K   ++    W S+++ D E+  +  E        ++ F
Sbjct: 132 LKPSGKFIXYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRF 191

Query: 609 AV----------KLYWTAPAEETASESS 626
            V          KLY+T  AEE     S
Sbjct: 192 NVWGKTGVELLAKLYFTKEAEEKVGNYS 219


>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
           Indicator Rcamp
          Length = 440

 Score = 29.3 bits (64), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 318 WKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQKLSQ 377
            +K  +GW+ T++ L +EQ A    A SL      + GD  I  K +  +     + L Q
Sbjct: 282 MQKKTKGWEPTRDQLTEEQIAEFKEAFSL----FDKDGDGTITTKELGTV----MRSLGQ 333

Query: 378 NPPFCPVQD 386
           NP    +QD
Sbjct: 334 NPTEAELQD 342


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,895,516
Number of Sequences: 62578
Number of extensions: 865411
Number of successful extensions: 1553
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1553
Number of HSP's gapped (non-prelim): 15
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)