Query 006905
Match_columns 626
No_of_seqs 602 out of 3281
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 16:10:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 7E-148 2E-152 1187.8 34.6 500 99-611 1-506 (506)
2 PF03141 Methyltransf_29: Puta 99.9 1.8E-28 3.9E-33 265.1 7.7 156 449-614 93-263 (506)
3 PLN02336 phosphoethanolamine N 99.9 6E-22 1.3E-26 220.5 15.8 327 200-572 28-369 (475)
4 COG2226 UbiE Methylase involve 99.6 6.6E-15 1.4E-19 149.2 11.0 102 211-313 51-156 (238)
5 PF08241 Methyltransf_11: Meth 99.5 1.9E-14 4.1E-19 123.1 8.6 90 216-311 1-95 (95)
6 PF01209 Ubie_methyltran: ubiE 99.5 3.2E-14 6.8E-19 144.7 11.0 101 212-313 48-153 (233)
7 PRK01544 bifunctional N5-gluta 99.4 6.1E-12 1.3E-16 141.5 22.0 114 469-586 347-477 (506)
8 COG2227 UbiG 2-polyprenyl-3-me 99.4 4.7E-13 1E-17 134.3 9.6 155 156-318 9-166 (243)
9 PLN02233 ubiquinone biosynthes 99.4 1.6E-12 3.4E-17 134.4 13.5 102 212-314 74-183 (261)
10 PRK10258 biotin biosynthesis p 99.4 2.3E-12 4.9E-17 131.9 14.1 98 211-314 42-141 (251)
11 PLN02396 hexaprenyldihydroxybe 99.4 3.2E-12 6.9E-17 135.8 12.5 103 211-315 131-237 (322)
12 PTZ00098 phosphoethanolamine N 99.4 2.4E-12 5.3E-17 133.2 11.4 118 190-314 33-157 (263)
13 PLN02244 tocopherol O-methyltr 99.4 3.9E-12 8.5E-17 136.4 12.7 102 211-314 118-224 (340)
14 PF08241 Methyltransf_11: Meth 99.3 1.1E-12 2.4E-17 112.0 5.2 90 474-570 1-95 (95)
15 PRK14103 trans-aconitate 2-met 99.3 7.8E-12 1.7E-16 128.5 10.6 94 212-314 30-127 (255)
16 TIGR02752 MenG_heptapren 2-hep 99.3 3E-11 6.6E-16 121.7 13.3 112 199-314 35-152 (231)
17 PRK11207 tellurite resistance 99.3 2.4E-11 5.1E-16 120.4 11.8 99 212-312 31-133 (197)
18 PF12847 Methyltransf_18: Meth 99.3 2.4E-11 5.3E-16 108.0 10.1 101 212-313 2-111 (112)
19 TIGR00477 tehB tellurite resis 99.3 4.1E-11 8.9E-16 118.5 12.0 99 212-312 31-132 (195)
20 PRK11036 putative S-adenosyl-L 99.2 2.8E-11 6.1E-16 124.4 11.0 113 200-314 33-150 (255)
21 KOG1540 Ubiquinone biosynthesi 99.2 2.7E-11 5.9E-16 121.8 10.4 105 208-314 97-215 (296)
22 PRK05785 hypothetical protein; 99.2 5E-11 1.1E-15 120.7 12.5 87 212-307 52-141 (226)
23 TIGR00740 methyltransferase, p 99.2 5.1E-11 1.1E-15 121.2 12.5 102 211-314 53-162 (239)
24 PF13489 Methyltransf_23: Meth 99.2 2.1E-11 4.6E-16 114.7 9.1 108 197-316 9-118 (161)
25 PRK15068 tRNA mo(5)U34 methylt 99.2 1.1E-10 2.3E-15 124.4 14.1 101 211-313 122-226 (322)
26 PRK01683 trans-aconitate 2-met 99.2 5.5E-11 1.2E-15 122.0 11.3 96 212-314 32-131 (258)
27 TIGR02072 BioC biotin biosynth 99.2 7.7E-11 1.7E-15 118.2 11.9 97 212-314 35-136 (240)
28 PF13847 Methyltransf_31: Meth 99.2 7E-11 1.5E-15 111.7 10.5 100 212-314 4-111 (152)
29 PF05219 DREV: DREV methyltran 99.2 8.1E-11 1.7E-15 119.7 11.4 180 184-392 65-255 (265)
30 PRK08317 hypothetical protein; 99.2 4E-10 8.6E-15 112.8 16.1 116 195-314 5-125 (241)
31 PRK15451 tRNA cmo(5)U34 methyl 99.2 8.1E-11 1.8E-15 120.6 11.0 116 195-313 40-164 (247)
32 PRK11088 rrmA 23S rRNA methylt 99.2 7.9E-11 1.7E-15 122.3 10.8 92 212-316 86-184 (272)
33 PF07021 MetW: Methionine bios 99.2 6.1E-11 1.3E-15 115.9 9.0 140 200-351 6-163 (193)
34 PLN02336 phosphoethanolamine N 99.2 1.8E-10 3.8E-15 128.8 13.8 102 211-314 266-370 (475)
35 PF08242 Methyltransf_12: Meth 99.2 1.1E-11 2.4E-16 108.4 3.0 93 216-309 1-99 (99)
36 PF13649 Methyltransf_25: Meth 99.2 3.4E-11 7.4E-16 106.0 5.9 92 215-307 1-101 (101)
37 PF02353 CMAS: Mycolic acid cy 99.2 1.3E-10 2.8E-15 121.0 10.7 107 199-313 52-166 (273)
38 PRK12335 tellurite resistance 99.2 2.1E-10 4.5E-15 120.2 12.1 99 213-313 122-223 (287)
39 PRK11873 arsM arsenite S-adeno 99.1 2.3E-10 5E-15 118.5 11.8 101 212-314 78-184 (272)
40 TIGR00452 methyltransferase, p 99.1 2.7E-10 5.9E-15 120.7 12.4 99 211-313 121-225 (314)
41 PLN02490 MPBQ/MSBQ methyltrans 99.1 5.5E-10 1.2E-14 119.4 14.7 99 212-314 114-216 (340)
42 COG2226 UbiE Methylase involve 99.1 1.3E-10 2.7E-15 118.2 8.5 99 470-573 52-157 (238)
43 PRK00107 gidB 16S rRNA methylt 99.1 1.3E-09 2.7E-14 107.5 15.0 153 448-612 27-187 (187)
44 KOG4300 Predicted methyltransf 99.1 2.6E-10 5.6E-15 111.6 9.7 100 214-314 79-183 (252)
45 PF03848 TehB: Tellurite resis 99.1 5.4E-10 1.2E-14 110.2 12.1 100 212-313 31-133 (192)
46 PRK00107 gidB 16S rRNA methylt 99.1 1.4E-09 3.1E-14 107.2 14.1 114 212-350 46-164 (187)
47 COG4106 Tam Trans-aconitate me 99.1 7.9E-10 1.7E-14 109.0 11.6 198 212-462 31-231 (257)
48 TIGR03587 Pse_Me-ase pseudamin 99.1 1E-09 2.3E-14 109.5 12.2 108 197-313 30-142 (204)
49 PTZ00098 phosphoethanolamine N 99.1 1.3E-10 2.9E-15 120.2 5.8 127 441-573 8-157 (263)
50 PRK00121 trmB tRNA (guanine-N( 99.1 5.7E-10 1.2E-14 111.1 9.8 102 211-314 40-157 (202)
51 COG2230 Cfa Cyclopropane fatty 99.1 7.5E-10 1.6E-14 114.7 10.6 123 183-313 46-176 (283)
52 PF05175 MTS: Methyltransferas 99.0 2.4E-09 5.3E-14 103.6 13.5 123 188-314 9-141 (170)
53 PRK06922 hypothetical protein; 99.0 6E-10 1.3E-14 126.4 10.2 101 212-313 419-537 (677)
54 PRK10258 biotin biosynthesis p 99.0 7.9E-10 1.7E-14 113.1 10.2 98 468-572 41-140 (251)
55 PF01209 Ubie_methyltran: ubiE 99.0 2.5E-10 5.5E-15 116.2 6.1 114 448-572 33-153 (233)
56 PF13489 Methyltransf_23: Meth 99.0 9.4E-11 2E-15 110.3 2.4 96 468-574 21-117 (161)
57 TIGR00406 prmA ribosomal prote 99.0 3.6E-09 7.7E-14 111.0 14.4 123 187-314 135-260 (288)
58 PLN02233 ubiquinone biosynthes 99.0 5.6E-10 1.2E-14 115.5 8.2 99 470-573 74-183 (261)
59 TIGR03840 TMPT_Se_Te thiopurin 99.0 2.7E-09 5.8E-14 107.3 12.7 102 212-313 35-152 (213)
60 PRK14103 trans-aconitate 2-met 99.0 9.1E-10 2E-14 113.2 9.5 107 459-572 20-126 (255)
61 TIGR02469 CbiT precorrin-6Y C5 99.0 4.1E-09 9E-14 94.8 12.6 108 199-313 9-122 (124)
62 smart00138 MeTrc Methyltransfe 99.0 1.3E-09 2.7E-14 113.1 10.2 103 211-313 99-242 (264)
63 PF06325 PrmA: Ribosomal prote 99.0 2.6E-09 5.6E-14 112.2 11.6 122 186-314 136-260 (295)
64 PF02353 CMAS: Mycolic acid cy 99.0 7.3E-10 1.6E-14 115.3 7.4 111 454-571 48-165 (273)
65 smart00828 PKS_MT Methyltransf 99.0 1.7E-09 3.7E-14 108.5 9.3 98 214-314 2-105 (224)
66 PRK11705 cyclopropane fatty ac 99.0 3.5E-09 7.5E-14 115.4 12.2 105 200-314 158-268 (383)
67 TIGR00091 tRNA (guanine-N(7)-) 99.0 2.6E-09 5.6E-14 105.6 10.0 101 212-314 17-133 (194)
68 PRK15001 SAM-dependent 23S rib 99.0 1.3E-07 2.9E-12 102.6 24.1 130 471-611 230-373 (378)
69 PRK11188 rrmJ 23S rRNA methylt 99.0 2.7E-09 5.9E-14 106.9 9.9 102 199-313 40-165 (209)
70 PRK11207 tellurite resistance 99.0 1.1E-09 2.5E-14 108.4 7.1 95 471-570 32-132 (197)
71 PF12847 Methyltransf_18: Meth 98.9 6E-10 1.3E-14 99.0 4.5 98 471-572 3-111 (112)
72 COG2264 PrmA Ribosomal protein 98.9 2.9E-09 6.3E-14 111.2 10.2 122 188-314 139-264 (300)
73 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 8.1E-09 1.8E-13 102.6 12.8 108 199-314 29-144 (223)
74 COG2813 RsmC 16S RNA G1207 met 98.9 8.3E-09 1.8E-13 107.4 13.1 133 178-314 126-267 (300)
75 PLN02244 tocopherol O-methyltr 98.9 1.2E-09 2.5E-14 117.3 7.0 96 470-572 119-223 (340)
76 TIGR00138 gidB 16S rRNA methyl 98.9 8.6E-09 1.9E-13 101.0 12.3 96 212-314 43-143 (181)
77 PRK06202 hypothetical protein; 98.9 7.4E-09 1.6E-13 104.9 11.9 95 211-312 60-165 (232)
78 PRK11036 putative S-adenosyl-L 98.9 1.4E-09 2.9E-14 112.0 6.3 97 470-572 45-149 (255)
79 PF05401 NodS: Nodulation prot 98.9 9.9E-09 2.2E-13 100.8 11.8 101 207-313 39-146 (201)
80 PRK00517 prmA ribosomal protei 98.9 1.5E-08 3.3E-13 104.1 13.9 114 190-314 98-214 (250)
81 PRK09489 rsmC 16S ribosomal RN 98.9 1.3E-08 2.7E-13 109.4 13.8 99 213-314 198-304 (342)
82 PRK11783 rlmL 23S rRNA m(2)G24 98.9 2.8E-08 6.1E-13 116.2 17.7 123 471-595 540-679 (702)
83 PLN02396 hexaprenyldihydroxybe 98.9 2.4E-09 5.1E-14 114.0 7.8 96 471-572 133-235 (322)
84 TIGR02021 BchM-ChlM magnesium 98.9 8.9E-09 1.9E-13 103.3 11.5 113 196-312 40-157 (219)
85 PLN02585 magnesium protoporphy 98.9 1.5E-08 3.2E-13 107.6 13.6 116 196-316 128-252 (315)
86 PRK13944 protein-L-isoaspartat 98.9 1.4E-08 3E-13 101.4 12.6 107 197-313 60-173 (205)
87 PRK13255 thiopurine S-methyltr 98.9 8.2E-09 1.8E-13 104.1 11.0 96 212-311 38-153 (218)
88 PRK12335 tellurite resistance 98.9 3.6E-09 7.8E-14 110.9 8.4 115 472-594 123-257 (287)
89 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.1E-08 2.4E-13 110.7 12.3 100 212-313 123-235 (390)
90 PF08003 Methyltransf_9: Prote 98.9 1E-08 2.2E-13 106.7 11.3 101 210-312 114-218 (315)
91 KOG1270 Methyltransferases [Co 98.9 5.6E-09 1.2E-13 106.0 9.1 96 212-314 90-196 (282)
92 TIGR00537 hemK_rel_arch HemK-r 98.9 1.8E-08 3.8E-13 98.1 12.4 100 212-314 20-141 (179)
93 PRK15001 SAM-dependent 23S rib 98.9 1.5E-08 3.3E-13 109.8 13.0 110 200-313 219-340 (378)
94 PRK00216 ubiE ubiquinone/menaq 98.9 2.2E-08 4.8E-13 100.6 13.2 102 212-314 52-159 (239)
95 PRK05134 bifunctional 3-demeth 98.9 1.9E-08 4.1E-13 101.7 12.7 102 211-314 48-152 (233)
96 KOG3010 Methyltransferase [Gen 98.9 6.2E-09 1.3E-13 104.4 8.9 92 213-312 35-136 (261)
97 PRK11705 cyclopropane fatty ac 98.9 5.3E-09 1.1E-13 114.0 8.6 98 470-572 168-267 (383)
98 TIGR00477 tehB tellurite resis 98.9 4.2E-09 9.1E-14 104.2 7.1 95 471-571 32-132 (195)
99 PRK08287 cobalt-precorrin-6Y C 98.8 6.5E-08 1.4E-12 94.8 15.2 105 200-313 22-131 (187)
100 TIGR02752 MenG_heptapren 2-hep 98.8 3.2E-08 7E-13 99.7 13.4 100 470-573 46-152 (231)
101 TIGR00452 methyltransferase, p 98.8 8E-09 1.7E-13 109.6 9.2 116 449-571 103-224 (314)
102 PRK13942 protein-L-isoaspartat 98.8 2.3E-08 4.9E-13 100.4 11.6 109 195-313 62-176 (212)
103 PRK01683 trans-aconitate 2-met 98.8 2.1E-08 4.6E-13 103.0 11.6 125 460-592 23-154 (258)
104 TIGR03534 RF_mod_PrmC protein- 98.8 8.5E-08 1.8E-12 97.5 15.6 115 194-313 73-217 (251)
105 PRK05785 hypothetical protein; 98.8 1.3E-08 2.7E-13 103.3 9.4 106 448-566 35-141 (226)
106 PRK15068 tRNA mo(5)U34 methylt 98.8 1E-08 2.2E-13 109.3 8.8 96 470-571 123-225 (322)
107 TIGR01983 UbiG ubiquinone bios 98.8 3.5E-08 7.6E-13 98.8 12.0 101 212-314 46-150 (224)
108 TIGR00080 pimt protein-L-isoas 98.8 3.6E-08 7.8E-13 98.9 12.0 107 197-313 65-177 (215)
109 PRK07580 Mg-protoporphyrin IX 98.8 3.7E-08 8.1E-13 98.9 12.0 109 197-309 48-162 (230)
110 smart00828 PKS_MT Methyltransf 98.8 5.5E-09 1.2E-13 104.8 5.9 116 471-592 1-140 (224)
111 COG4976 Predicted methyltransf 98.8 2.6E-09 5.6E-14 106.1 3.3 107 201-313 114-225 (287)
112 PRK14967 putative methyltransf 98.8 1.1E-07 2.3E-12 96.1 15.0 101 212-314 37-160 (223)
113 COG4976 Predicted methyltransf 98.8 4.5E-09 9.7E-14 104.5 4.6 144 462-612 119-286 (287)
114 KOG1541 Predicted protein carb 98.8 2.2E-08 4.8E-13 99.1 9.1 115 197-317 36-164 (270)
115 TIGR00740 methyltransferase, p 98.8 7E-09 1.5E-13 105.5 5.8 101 470-574 54-163 (239)
116 TIGR00138 gidB 16S rRNA methyl 98.8 3.1E-08 6.6E-13 97.1 9.8 134 448-594 25-165 (181)
117 PRK15451 tRNA cmo(5)U34 methyl 98.8 7.4E-09 1.6E-13 106.1 5.7 100 471-573 58-165 (247)
118 PLN03075 nicotianamine synthas 98.8 4.4E-08 9.5E-13 102.6 11.4 102 211-313 123-233 (296)
119 TIGR02716 C20_methyl_CrtF C-20 98.8 6.6E-08 1.4E-12 102.1 12.7 99 212-314 150-255 (306)
120 TIGR00537 hemK_rel_arch HemK-r 98.8 5.2E-08 1.1E-12 94.8 10.9 132 471-611 21-177 (179)
121 PRK11088 rrmA 23S rRNA methylt 98.7 2E-08 4.3E-13 104.4 8.1 104 469-583 85-193 (272)
122 PF05401 NodS: Nodulation prot 98.7 7.5E-08 1.6E-12 94.7 11.1 148 457-610 31-193 (201)
123 TIGR01177 conserved hypothetic 98.7 1.2E-07 2.6E-12 101.4 13.4 102 212-314 183-295 (329)
124 PRK04266 fibrillarin; Provisio 98.7 8.5E-08 1.8E-12 97.3 11.6 102 205-314 68-177 (226)
125 PRK08287 cobalt-precorrin-6Y C 98.7 1.1E-07 2.4E-12 93.1 12.2 113 470-591 32-151 (187)
126 PF13659 Methyltransf_26: Meth 98.7 2.1E-08 4.5E-13 89.9 6.4 101 213-314 2-116 (117)
127 cd02440 AdoMet_MTases S-adenos 98.7 6.9E-08 1.5E-12 81.8 9.1 99 214-312 1-103 (107)
128 TIGR02081 metW methionine bios 98.7 6.9E-08 1.5E-12 95.2 10.3 91 212-313 14-109 (194)
129 PTZ00146 fibrillarin; Provisio 98.7 1.5E-07 3.3E-12 98.3 12.9 97 211-312 132-236 (293)
130 PRK08317 hypothetical protein; 98.7 4.2E-08 9.2E-13 98.1 8.4 102 468-572 18-124 (241)
131 PF08242 Methyltransf_12: Meth 98.7 6.4E-09 1.4E-13 90.9 2.0 91 474-568 1-99 (99)
132 TIGR03438 probable methyltrans 98.7 1.1E-07 2.5E-12 100.3 11.9 103 212-314 64-178 (301)
133 PRK00377 cbiT cobalt-precorrin 98.7 1.8E-07 3.9E-12 92.6 12.0 150 436-594 8-168 (198)
134 TIGR02072 BioC biotin biosynth 98.7 7.4E-08 1.6E-12 96.5 9.2 99 470-572 35-135 (240)
135 KOG2940 Predicted methyltransf 98.7 1.8E-08 3.9E-13 100.1 4.4 96 212-313 73-174 (325)
136 PRK14968 putative methyltransf 98.7 2.9E-07 6.3E-12 89.2 12.9 101 212-314 24-149 (188)
137 PRK09489 rsmC 16S ribosomal RN 98.7 6.2E-06 1.3E-10 88.8 24.2 131 472-612 199-337 (342)
138 PRK00121 trmB tRNA (guanine-N( 98.7 5.5E-08 1.2E-12 96.8 7.9 123 470-593 41-178 (202)
139 PF13847 Methyltransf_31: Meth 98.7 3.3E-08 7.1E-13 93.5 6.0 98 470-574 4-112 (152)
140 PRK00312 pcm protein-L-isoaspa 98.7 2.3E-07 5E-12 92.7 12.4 108 197-314 66-176 (212)
141 PRK13256 thiopurine S-methyltr 98.7 3E-07 6.6E-12 93.1 13.3 103 212-314 44-164 (226)
142 smart00138 MeTrc Methyltransfe 98.6 6.4E-08 1.4E-12 100.4 8.4 130 441-574 71-244 (264)
143 COG4123 Predicted O-methyltran 98.6 2.8E-07 6.1E-12 94.1 12.7 125 188-316 25-173 (248)
144 COG2227 UbiG 2-polyprenyl-3-me 98.6 4.8E-08 1E-12 98.5 6.9 96 472-573 62-162 (243)
145 PF05148 Methyltransf_8: Hypot 98.6 1.6E-07 3.4E-12 93.1 10.1 122 200-354 62-184 (219)
146 KOG1540 Ubiquinone biosynthesi 98.6 1.1E-07 2.4E-12 96.2 9.1 122 463-590 95-233 (296)
147 KOG1271 Methyltransferases [Ge 98.6 2.2E-07 4.9E-12 89.6 10.7 100 214-314 70-182 (227)
148 TIGR00406 prmA ribosomal prote 98.6 1E-07 2.2E-12 100.1 9.1 115 471-594 161-281 (288)
149 PRK14968 putative methyltransf 98.6 1.7E-07 3.7E-12 90.9 9.8 136 470-611 24-188 (188)
150 PRK00377 cbiT cobalt-precorrin 98.6 3.1E-07 6.7E-12 91.0 11.6 98 211-313 40-145 (198)
151 COG2230 Cfa Cyclopropane fatty 98.6 1E-07 2.3E-12 98.9 8.3 112 453-571 57-175 (283)
152 PRK00517 prmA ribosomal protei 98.6 2.4E-07 5.2E-12 95.2 10.8 126 470-611 120-249 (250)
153 PRK14966 unknown domain/N5-glu 98.6 8.1E-07 1.8E-11 97.1 15.3 101 213-314 253-382 (423)
154 PRK09328 N5-glutamine S-adenos 98.6 9.1E-07 2E-11 91.5 15.1 101 212-313 109-238 (275)
155 TIGR00438 rrmJ cell division p 98.6 5E-07 1.1E-11 88.7 12.1 91 212-313 33-146 (188)
156 TIGR03533 L3_gln_methyl protei 98.6 1.6E-06 3.5E-11 90.9 16.6 101 212-314 122-252 (284)
157 PRK11873 arsM arsenite S-adeno 98.6 8E-08 1.7E-12 99.6 6.4 96 470-572 78-183 (272)
158 PRK07402 precorrin-6B methylas 98.6 7.5E-07 1.6E-11 88.0 12.9 107 200-314 31-143 (196)
159 PF03848 TehB: Tellurite resis 98.6 8.1E-08 1.8E-12 94.9 5.7 116 471-594 32-167 (192)
160 PLN02490 MPBQ/MSBQ methyltrans 98.5 2.2E-07 4.7E-12 99.6 9.3 118 470-593 114-253 (340)
161 PF06080 DUF938: Protein of un 98.5 9.2E-07 2E-11 87.8 12.9 116 194-314 11-142 (204)
162 TIGR03587 Pse_Me-ase pseudamin 98.5 1.8E-07 3.9E-12 93.4 8.0 96 470-572 44-142 (204)
163 PLN02232 ubiquinone biosynthes 98.5 1.7E-07 3.8E-12 89.8 7.5 78 236-314 2-82 (160)
164 TIGR00536 hemK_fam HemK family 98.5 1.5E-06 3.3E-11 91.0 15.1 100 213-314 116-245 (284)
165 PRK06922 hypothetical protein; 98.5 1.4E-07 2.9E-12 107.5 7.4 102 471-573 420-538 (677)
166 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 3.4E-07 7.3E-12 91.0 9.3 98 469-572 39-143 (223)
167 PF13649 Methyltransf_25: Meth 98.5 2.6E-08 5.6E-13 87.6 1.1 90 473-566 1-101 (101)
168 PF03291 Pox_MCEL: mRNA cappin 98.5 4.7E-07 1E-11 96.9 10.9 104 211-314 62-187 (331)
169 PRK06202 hypothetical protein; 98.5 4E-07 8.6E-12 92.3 9.8 102 468-573 59-167 (232)
170 KOG3045 Predicted RNA methylas 98.5 4.7E-07 1E-11 91.7 10.0 110 212-354 181-290 (325)
171 TIGR00091 tRNA (guanine-N(7)-) 98.5 2.8E-07 6E-12 91.1 7.6 121 470-591 17-153 (194)
172 TIGR03704 PrmC_rel_meth putati 98.5 3E-06 6.4E-11 87.4 15.2 117 194-314 70-217 (251)
173 PRK13943 protein-L-isoaspartat 98.5 1.3E-06 2.8E-11 93.2 12.2 107 197-313 68-180 (322)
174 TIGR01983 UbiG ubiquinone bios 98.5 6.9E-07 1.5E-11 89.5 9.6 125 443-573 19-150 (224)
175 PF05891 Methyltransf_PK: AdoM 98.5 1.7E-07 3.7E-12 93.5 5.1 101 211-313 55-161 (218)
176 TIGR02021 BchM-ChlM magnesium 98.5 4.5E-07 9.7E-12 91.0 8.2 101 469-573 55-159 (219)
177 PRK11805 N5-glutamine S-adenos 98.5 2.5E-06 5.4E-11 90.5 14.2 100 213-314 135-264 (307)
178 KOG3987 Uncharacterized conser 98.4 1.6E-07 3.4E-12 92.2 4.5 118 181-312 82-206 (288)
179 PRK00811 spermidine synthase; 98.4 2.8E-06 6.1E-11 89.1 13.6 103 210-313 75-191 (283)
180 PRK04266 fibrillarin; Provisio 98.4 2.2E-06 4.7E-11 87.1 12.2 134 471-612 74-226 (226)
181 PF01135 PCMT: Protein-L-isoas 98.4 8.3E-07 1.8E-11 89.0 9.0 110 195-314 58-173 (209)
182 PRK00216 ubiE ubiquinone/menaq 98.4 3.8E-06 8.3E-11 84.3 13.7 99 470-572 52-158 (239)
183 TIGR00438 rrmJ cell division p 98.4 4E-07 8.7E-12 89.3 6.3 137 470-610 33-186 (188)
184 PRK10901 16S rRNA methyltransf 98.4 2.2E-06 4.8E-11 94.9 12.8 103 211-314 244-373 (427)
185 smart00650 rADc Ribosomal RNA 98.4 1.3E-06 2.9E-11 84.2 9.6 105 200-312 4-112 (169)
186 PF07021 MetW: Methionine bios 98.4 3.3E-07 7.2E-12 89.9 5.2 117 464-592 11-163 (193)
187 KOG2361 Predicted methyltransf 98.4 6.2E-07 1.3E-11 90.2 7.2 118 194-316 54-186 (264)
188 PF00891 Methyltransf_2: O-met 98.4 2.1E-06 4.6E-11 87.4 11.3 93 211-313 100-199 (241)
189 KOG1975 mRNA cap methyltransfe 98.4 9.1E-07 2E-11 92.2 8.3 104 211-314 117-238 (389)
190 PRK05134 bifunctional 3-demeth 98.4 6.9E-07 1.5E-11 90.3 7.0 98 470-573 49-152 (233)
191 PRK07580 Mg-protoporphyrin IX 98.4 1.6E-06 3.4E-11 87.1 9.6 96 470-572 64-166 (230)
192 TIGR03840 TMPT_Se_Te thiopurin 98.4 4.5E-07 9.8E-12 91.2 5.4 96 471-570 36-150 (213)
193 KOG3010 Methyltransferase [Gen 98.3 6.1E-07 1.3E-11 90.3 5.6 115 468-590 32-158 (261)
194 TIGR02081 metW methionine bios 98.3 1E-06 2.2E-11 86.9 7.1 88 472-564 16-104 (194)
195 PRK04457 spermidine synthase; 98.3 4.5E-06 9.6E-11 86.6 12.1 116 196-312 52-176 (262)
196 PRK09328 N5-glutamine S-adenos 98.3 2.4E-06 5.1E-11 88.4 10.1 136 470-611 109-275 (275)
197 TIGR00563 rsmB ribosomal RNA s 98.3 4.5E-06 9.8E-11 92.4 12.8 113 201-316 230-371 (426)
198 COG2518 Pcm Protein-L-isoaspar 98.3 4.2E-06 9E-11 83.4 11.2 107 197-314 60-170 (209)
199 PF02390 Methyltransf_4: Putat 98.3 2.1E-06 4.4E-11 85.3 8.9 98 214-313 20-133 (195)
200 TIGR02469 CbiT precorrin-6Y C5 98.3 2.2E-06 4.7E-11 77.0 8.3 95 470-571 20-121 (124)
201 COG4106 Tam Trans-aconitate me 98.3 1.5E-06 3.3E-11 86.2 7.6 146 459-616 21-191 (257)
202 PRK14901 16S rRNA methyltransf 98.3 4.2E-06 9.2E-11 92.9 12.1 103 211-314 252-385 (434)
203 PRK07402 precorrin-6B methylas 98.3 7.5E-06 1.6E-10 80.9 12.6 112 470-589 41-160 (196)
204 PRK14967 putative methyltransf 98.3 2.3E-06 4.9E-11 86.4 9.1 119 471-594 38-182 (223)
205 TIGR03534 RF_mod_PrmC protein- 98.3 3.2E-06 6.9E-11 86.0 10.2 119 471-592 89-237 (251)
206 PRK14121 tRNA (guanine-N(7)-)- 98.3 2.1E-06 4.6E-11 93.2 9.3 121 470-591 123-256 (390)
207 PRK14904 16S rRNA methyltransf 98.3 2.8E-06 6.1E-11 94.5 10.4 103 211-315 250-379 (445)
208 PHA03411 putative methyltransf 98.3 4.9E-06 1.1E-10 86.3 11.0 95 212-312 65-182 (279)
209 TIGR00446 nop2p NOL1/NOP2/sun 98.3 1.8E-06 3.9E-11 89.6 7.8 104 211-315 71-201 (264)
210 PRK11188 rrmJ 23S rRNA methylt 98.3 3.8E-06 8.3E-11 84.2 9.7 95 471-571 53-164 (209)
211 PHA03412 putative methyltransf 98.3 5.5E-06 1.2E-10 84.2 10.6 93 212-311 50-160 (241)
212 KOG4300 Predicted methyltransf 98.2 6.2E-06 1.4E-10 81.3 10.3 120 448-574 51-184 (252)
213 COG0220 Predicted S-adenosylme 98.2 4.6E-06 1E-10 84.6 9.7 99 213-313 50-164 (227)
214 TIGR02716 C20_methyl_CrtF C-20 98.2 1.6E-06 3.4E-11 91.6 6.6 102 468-573 148-255 (306)
215 TIGR00536 hemK_fam HemK family 98.2 5.2E-06 1.1E-10 87.0 10.4 136 471-612 116-283 (284)
216 PRK14903 16S rRNA methyltransf 98.2 6.7E-06 1.5E-10 91.2 11.8 104 211-315 237-368 (431)
217 TIGR03704 PrmC_rel_meth putati 98.2 4.7E-06 1E-10 85.9 9.8 127 471-599 88-243 (251)
218 TIGR03533 L3_gln_methyl protei 98.2 4.5E-06 9.8E-11 87.6 9.7 121 470-595 122-273 (284)
219 KOG1270 Methyltransferases [Co 98.2 1.3E-06 2.8E-11 89.1 5.0 98 470-573 90-196 (282)
220 COG2890 HemK Methylase of poly 98.2 1.6E-05 3.4E-10 83.4 13.4 98 214-314 113-239 (280)
221 PRK13942 protein-L-isoaspartat 98.2 2.3E-06 4.9E-11 86.0 6.8 91 470-571 77-175 (212)
222 TIGR00417 speE spermidine synt 98.2 7.8E-06 1.7E-10 85.1 10.9 102 211-313 72-186 (270)
223 PRK13255 thiopurine S-methyltr 98.2 2.1E-06 4.5E-11 86.8 6.0 96 471-570 39-153 (218)
224 PRK14902 16S rRNA methyltransf 98.2 7E-06 1.5E-10 91.3 10.6 101 212-314 251-380 (444)
225 cd02440 AdoMet_MTases S-adenos 98.2 4.2E-06 9.1E-11 70.7 6.6 96 472-571 1-103 (107)
226 PRK13168 rumA 23S rRNA m(5)U19 98.2 1.2E-05 2.6E-10 89.5 12.1 112 197-316 285-403 (443)
227 PRK11805 N5-glutamine S-adenos 98.2 7.2E-06 1.6E-10 87.0 9.7 113 471-588 135-278 (307)
228 COG2242 CobL Precorrin-6B meth 98.2 4.2E-05 9.1E-10 74.9 14.1 99 208-313 31-135 (187)
229 PRK01581 speE spermidine synth 98.2 1.1E-05 2.5E-10 86.7 11.1 111 197-313 136-268 (374)
230 COG2890 HemK Methylase of poly 98.2 1.1E-05 2.5E-10 84.4 10.9 159 443-611 92-276 (280)
231 COG2264 PrmA Ribosomal protein 98.2 1.4E-05 2.9E-10 84.0 11.2 120 470-597 163-289 (300)
232 PRK14966 unknown domain/N5-glu 98.1 1.3E-05 2.8E-10 87.8 11.3 136 472-611 254-418 (423)
233 PF05724 TPMT: Thiopurine S-me 98.1 2.4E-05 5.2E-10 79.1 12.4 99 211-312 37-154 (218)
234 KOG1541 Predicted protein carb 98.1 1.4E-05 3.1E-10 79.5 10.5 139 468-609 49-201 (270)
235 PTZ00146 fibrillarin; Provisio 98.1 1.8E-05 3.9E-10 83.0 11.5 95 471-571 134-236 (293)
236 PF06325 PrmA: Ribosomal prote 98.1 5.3E-06 1.2E-10 87.4 7.7 129 471-612 163-295 (295)
237 PRK10909 rsmD 16S rRNA m(2)G96 98.1 4E-05 8.7E-10 76.4 13.5 132 177-314 21-160 (199)
238 TIGR00080 pimt protein-L-isoas 98.1 3.4E-06 7.4E-11 84.6 5.9 90 470-571 78-176 (215)
239 PLN02366 spermidine synthase 98.1 2.2E-05 4.9E-10 83.3 12.3 102 211-313 91-206 (308)
240 PRK13944 protein-L-isoaspartat 98.1 4.6E-06 9.9E-11 83.2 6.5 93 470-572 73-173 (205)
241 TIGR03438 probable methyltrans 98.1 4.6E-06 1E-10 88.2 6.6 99 471-571 65-176 (301)
242 PF05175 MTS: Methyltransferas 98.1 4E-06 8.7E-11 81.1 5.4 113 470-585 32-155 (170)
243 COG4123 Predicted O-methyltran 98.1 2.2E-05 4.7E-10 80.4 10.7 118 469-592 44-190 (248)
244 PRK01544 bifunctional N5-gluta 98.1 1.3E-05 2.9E-10 90.6 9.8 134 470-610 139-305 (506)
245 PRK04457 spermidine synthase; 98.0 2.5E-05 5.4E-10 81.1 10.5 138 469-611 66-216 (262)
246 PRK03522 rumB 23S rRNA methylu 98.0 4E-05 8.7E-10 81.6 11.8 100 212-316 174-277 (315)
247 PLN02781 Probable caffeoyl-CoA 98.0 3.2E-05 7E-10 78.9 10.5 97 212-313 69-178 (234)
248 PRK10611 chemotaxis methyltran 98.0 2E-05 4.4E-10 82.7 9.1 101 212-312 116-261 (287)
249 PRK03612 spermidine synthase; 98.0 5.8E-05 1.3E-09 85.8 13.5 97 211-313 297-415 (521)
250 PF05219 DREV: DREV methyltran 98.0 1.6E-05 3.4E-10 81.5 7.6 92 469-571 94-187 (265)
251 COG2519 GCD14 tRNA(1-methylade 98.0 9.7E-05 2.1E-09 75.4 13.3 104 201-314 86-196 (256)
252 PF01739 CheR: CheR methyltran 98.0 1.9E-05 4.1E-10 78.6 7.8 98 211-313 31-175 (196)
253 PRK00312 pcm protein-L-isoaspa 98.0 1.9E-05 4.1E-10 78.9 7.9 88 470-571 79-174 (212)
254 KOG2899 Predicted methyltransf 98.0 3.7E-05 8E-10 77.6 9.7 97 211-312 58-208 (288)
255 TIGR00478 tly hemolysin TlyA f 98.0 4.1E-05 8.8E-10 77.9 10.2 90 211-315 75-173 (228)
256 COG2813 RsmC 16S RNA G1207 met 98.0 0.00052 1.1E-08 72.0 18.3 129 472-611 161-299 (300)
257 TIGR01177 conserved hypothetic 97.9 1.6E-05 3.5E-10 85.0 7.2 114 470-589 183-309 (329)
258 TIGR00479 rumA 23S rRNA (uraci 97.9 5E-05 1.1E-09 84.2 11.3 98 212-314 293-397 (431)
259 PF05148 Methyltransf_8: Hypot 97.9 0.00011 2.3E-09 73.3 12.2 120 470-613 73-199 (219)
260 PLN02585 magnesium protoporphy 97.9 4.8E-05 1E-09 81.0 10.4 95 471-571 146-248 (315)
261 KOG1331 Predicted methyltransf 97.9 7.4E-06 1.6E-10 84.5 3.3 108 199-313 34-143 (293)
262 COG0500 SmtA SAM-dependent met 97.9 9.2E-05 2E-09 65.1 9.9 97 215-314 52-156 (257)
263 PRK11783 rlmL 23S rRNA m(2)G24 97.9 3.1E-05 6.6E-10 91.0 8.6 102 212-314 539-657 (702)
264 PF08003 Methyltransf_9: Prote 97.8 5.7E-05 1.2E-09 79.1 9.0 119 468-592 114-263 (315)
265 PF05891 Methyltransf_PK: AdoM 97.8 2.5E-05 5.4E-10 78.2 6.0 127 468-597 54-202 (218)
266 PLN02672 methionine S-methyltr 97.8 0.00013 2.9E-09 88.3 13.2 101 212-314 119-279 (1082)
267 PF13659 Methyltransf_26: Meth 97.8 7.6E-06 1.7E-10 73.2 2.1 98 472-571 3-114 (117)
268 PRK11727 23S rRNA mA1618 methy 97.8 0.00014 3.1E-09 77.5 11.9 96 192-287 89-201 (321)
269 PF10294 Methyltransf_16: Puta 97.8 9.9E-05 2.1E-09 71.8 9.8 101 211-314 45-157 (173)
270 PRK15128 23S rRNA m(5)C1962 me 97.8 7.9E-05 1.7E-09 81.8 10.0 101 212-313 221-339 (396)
271 PLN03075 nicotianamine synthas 97.8 0.00015 3.2E-09 76.3 11.6 139 469-613 123-276 (296)
272 PLN02232 ubiquinone biosynthes 97.8 2.5E-05 5.4E-10 75.0 5.3 72 499-574 2-83 (160)
273 TIGR02085 meth_trns_rumB 23S r 97.8 0.00014 3E-09 79.3 11.4 100 212-316 234-337 (374)
274 PF00891 Methyltransf_2: O-met 97.8 3.2E-05 6.9E-10 78.8 6.1 102 464-574 96-201 (241)
275 PF02390 Methyltransf_4: Putat 97.8 5.9E-05 1.3E-09 75.0 7.2 112 471-587 19-149 (195)
276 KOG2904 Predicted methyltransf 97.7 0.00029 6.3E-09 72.4 11.6 117 193-314 129-286 (328)
277 COG2263 Predicted RNA methylas 97.7 0.00045 9.8E-09 67.7 11.8 91 208-302 42-136 (198)
278 PF01728 FtsJ: FtsJ-like methy 97.7 0.00011 2.5E-09 71.4 7.4 137 468-611 22-180 (181)
279 PLN02476 O-methyltransferase 97.7 0.00024 5.1E-09 74.3 10.1 96 212-312 119-227 (278)
280 PF08704 GCD14: tRNA methyltra 97.6 0.00051 1.1E-08 70.7 12.1 106 200-314 31-147 (247)
281 COG4122 Predicted O-methyltran 97.6 0.0012 2.6E-08 66.6 13.9 96 212-312 60-165 (219)
282 PRK14896 ksgA 16S ribosomal RN 97.6 0.00023 5E-09 73.7 8.8 85 195-285 15-101 (258)
283 TIGR00478 tly hemolysin TlyA f 97.6 0.0004 8.6E-09 70.7 10.3 109 469-592 75-213 (228)
284 KOG1499 Protein arginine N-met 97.6 0.00011 2.4E-09 78.0 6.4 98 212-311 61-165 (346)
285 PF01596 Methyltransf_3: O-met 97.6 0.00039 8.4E-09 69.7 9.9 97 212-313 46-155 (205)
286 KOG3178 Hydroxyindole-O-methyl 97.6 0.00033 7.1E-09 74.6 9.8 95 212-314 178-276 (342)
287 TIGR00563 rsmB ribosomal RNA s 97.6 0.00024 5.2E-09 78.8 9.3 100 470-571 239-367 (426)
288 PRK10901 16S rRNA methyltransf 97.6 0.00018 3.9E-09 79.8 8.3 116 470-586 245-390 (427)
289 COG2521 Predicted archaeal met 97.6 8.1E-05 1.8E-09 74.8 4.9 114 194-312 117-244 (287)
290 TIGR00417 speE spermidine synt 97.6 0.00065 1.4E-08 70.8 11.7 143 468-611 71-232 (270)
291 PRK00274 ksgA 16S ribosomal RN 97.6 0.0002 4.3E-09 74.7 7.9 82 197-285 30-115 (272)
292 COG1041 Predicted DNA modifica 97.5 0.00038 8.3E-09 74.3 10.0 102 212-314 198-311 (347)
293 COG1352 CheR Methylase of chem 97.5 0.00049 1.1E-08 71.6 10.5 97 211-312 96-240 (268)
294 PRK00811 spermidine synthase; 97.5 0.00062 1.3E-08 71.5 11.4 102 468-571 75-190 (283)
295 PF07942 N2227: N2227-like pro 97.5 0.00056 1.2E-08 71.2 10.7 154 197-355 40-242 (270)
296 TIGR00446 nop2p NOL1/NOP2/sun 97.5 0.00024 5.2E-09 73.8 7.9 101 471-571 73-198 (264)
297 COG3963 Phospholipid N-methylt 97.5 0.00032 7E-09 67.3 8.0 104 210-313 47-156 (194)
298 PRK14904 16S rRNA methyltransf 97.5 0.0002 4.2E-09 79.9 7.7 114 470-586 251-395 (445)
299 COG2242 CobL Precorrin-6B meth 97.5 0.0016 3.4E-08 63.9 12.9 144 437-592 3-157 (187)
300 PRK14902 16S rRNA methyltransf 97.5 0.00027 5.9E-09 78.7 8.7 122 470-591 251-403 (444)
301 PRK01581 speE spermidine synth 97.5 0.00074 1.6E-08 72.9 11.5 147 468-615 149-317 (374)
302 TIGR00755 ksgA dimethyladenosi 97.5 0.00055 1.2E-08 70.5 10.2 80 197-285 17-104 (253)
303 PRK14901 16S rRNA methyltransf 97.5 0.00025 5.4E-09 78.9 8.1 119 471-590 254-407 (434)
304 PLN02823 spermine synthase 97.5 0.00045 9.7E-09 74.3 9.6 111 197-313 89-220 (336)
305 PRK14903 16S rRNA methyltransf 97.5 0.00031 6.7E-09 78.1 8.6 116 470-586 238-384 (431)
306 TIGR00095 RNA methyltransferas 97.5 0.0024 5.3E-08 63.1 14.0 132 178-314 18-160 (189)
307 PHA03411 putative methyltransf 97.5 0.00018 4E-09 74.8 6.2 97 471-571 66-182 (279)
308 PF11968 DUF3321: Putative met 97.5 0.00066 1.4E-08 68.0 9.6 134 195-353 33-179 (219)
309 KOG3045 Predicted RNA methylas 97.4 0.0007 1.5E-08 69.2 9.7 105 471-597 182-292 (325)
310 KOG1269 SAM-dependent methyltr 97.4 0.00025 5.4E-09 76.8 6.9 99 212-312 111-214 (364)
311 KOG2361 Predicted methyltransf 97.4 0.00018 3.9E-09 72.8 5.3 100 472-572 74-183 (264)
312 PRK13943 protein-L-isoaspartat 97.4 0.00029 6.3E-09 75.3 6.9 93 470-572 81-180 (322)
313 PF05185 PRMT5: PRMT5 arginine 97.4 0.0004 8.7E-09 77.4 8.3 128 436-570 149-295 (448)
314 PF05185 PRMT5: PRMT5 arginine 97.4 0.0007 1.5E-08 75.5 9.5 97 212-310 187-294 (448)
315 PTZ00338 dimethyladenosine tra 97.3 0.0014 3E-08 69.3 10.9 85 196-285 23-111 (294)
316 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.3 0.00076 1.6E-08 69.7 8.2 115 199-313 44-199 (256)
317 KOG1661 Protein-L-isoaspartate 97.3 0.0013 2.8E-08 65.5 9.3 102 200-313 71-193 (237)
318 PF01728 FtsJ: FtsJ-like methy 97.3 0.001 2.2E-08 64.7 8.6 110 194-314 5-140 (181)
319 PF12147 Methyltransf_20: Puta 97.2 0.0029 6.2E-08 66.0 11.8 140 210-354 134-297 (311)
320 PF01739 CheR: CheR methyltran 97.2 0.0005 1.1E-08 68.4 5.8 128 443-574 5-177 (196)
321 smart00650 rADc Ribosomal RNA 97.2 0.00057 1.2E-08 65.9 6.0 95 469-573 13-114 (169)
322 COG0500 SmtA SAM-dependent met 97.2 0.0012 2.7E-08 57.8 7.6 95 473-574 52-157 (257)
323 PRK04338 N(2),N(2)-dimethylgua 97.2 0.00095 2.1E-08 73.1 8.1 95 213-313 59-158 (382)
324 PRK13256 thiopurine S-methyltr 97.2 0.00033 7.1E-09 71.2 4.1 96 471-570 45-161 (226)
325 PRK03612 spermidine synthase; 97.2 0.0014 3E-08 74.6 9.6 123 469-592 297-440 (521)
326 PF03291 Pox_MCEL: mRNA cappin 97.2 0.00054 1.2E-08 73.5 5.8 129 448-582 42-198 (331)
327 PLN02781 Probable caffeoyl-CoA 97.2 0.0017 3.7E-08 66.3 9.1 130 470-612 69-233 (234)
328 PRK04148 hypothetical protein; 97.1 0.0029 6.3E-08 59.2 9.7 95 469-597 16-111 (134)
329 KOG3191 Predicted N6-DNA-methy 97.1 0.0035 7.6E-08 61.2 10.4 101 212-314 44-169 (209)
330 PHA03412 putative methyltransf 97.1 0.00095 2E-08 68.1 6.8 97 471-570 51-160 (241)
331 PF01170 UPF0020: Putative RNA 97.1 0.0026 5.6E-08 62.4 9.6 100 212-312 29-150 (179)
332 KOG2352 Predicted spermine/spe 97.1 0.0025 5.5E-08 70.5 10.1 99 214-313 51-161 (482)
333 PRK04148 hypothetical protein; 97.1 0.0024 5.3E-08 59.7 8.6 88 212-312 17-108 (134)
334 PF02527 GidB: rRNA small subu 97.1 0.005 1.1E-07 60.8 11.0 92 214-312 51-147 (184)
335 PF05724 TPMT: Thiopurine S-me 97.1 0.0022 4.8E-08 64.9 8.7 121 470-595 38-189 (218)
336 PRK05031 tRNA (uracil-5-)-meth 97.1 0.0028 6.1E-08 68.9 10.0 96 213-315 208-322 (362)
337 TIGR02143 trmA_only tRNA (urac 97.0 0.0031 6.7E-08 68.4 10.2 95 214-315 200-313 (353)
338 PLN02589 caffeoyl-CoA O-methyl 97.0 0.0027 5.9E-08 65.4 9.3 96 212-312 80-189 (247)
339 PF02475 Met_10: Met-10+ like- 97.0 0.0028 6E-08 63.3 9.1 124 176-310 70-199 (200)
340 PLN02366 spermidine synthase 97.0 0.002 4.3E-08 68.6 8.4 103 468-571 90-205 (308)
341 COG0293 FtsJ 23S rRNA methylas 97.0 0.005 1.1E-07 61.5 10.5 109 194-314 29-160 (205)
342 TIGR00479 rumA 23S rRNA (uraci 97.0 0.0029 6.2E-08 70.3 9.8 113 470-592 293-416 (431)
343 PRK13168 rumA 23S rRNA m(5)U19 97.0 0.0067 1.5E-07 67.7 12.4 129 471-610 299-441 (443)
344 COG0421 SpeE Spermidine syntha 97.0 0.0066 1.4E-07 63.8 11.4 100 208-313 73-190 (282)
345 PRK15128 23S rRNA m(5)C1962 me 96.9 0.0026 5.7E-08 70.0 8.6 123 471-595 222-368 (396)
346 PRK11933 yebU rRNA (cytosine-C 96.9 0.0074 1.6E-07 67.8 12.0 104 210-314 112-243 (470)
347 KOG1269 SAM-dependent methyltr 96.9 0.0016 3.4E-08 70.7 6.2 120 443-571 88-214 (364)
348 PF03602 Cons_hypoth95: Conser 96.9 0.0041 8.8E-08 61.3 8.6 133 177-314 9-154 (183)
349 COG0220 Predicted S-adenosylme 96.9 0.0026 5.7E-08 64.7 7.3 113 471-586 50-180 (227)
350 PF02384 N6_Mtase: N-6 DNA Met 96.8 0.0036 7.8E-08 66.2 8.6 117 195-314 32-184 (311)
351 PF02527 GidB: rRNA small subu 96.8 0.0056 1.2E-07 60.4 8.9 135 445-592 26-171 (184)
352 PF01135 PCMT: Protein-L-isoas 96.8 0.00062 1.4E-08 68.4 2.3 89 470-571 73-171 (209)
353 PF01564 Spermine_synth: Sperm 96.8 0.0058 1.3E-07 62.9 9.1 118 195-313 60-191 (246)
354 KOG1271 Methyltransferases [Ge 96.7 0.0043 9.3E-08 60.6 7.1 115 472-588 70-197 (227)
355 PRK03522 rumB 23S rRNA methylu 96.6 0.011 2.4E-07 63.0 10.2 128 471-611 175-314 (315)
356 PF08123 DOT1: Histone methyla 96.5 0.0071 1.5E-07 60.7 7.6 119 188-311 21-156 (205)
357 PRK00536 speE spermidine synth 96.5 0.024 5.1E-07 59.0 11.4 93 207-313 68-171 (262)
358 COG2265 TrmA SAM-dependent met 96.5 0.016 3.4E-07 64.6 10.7 100 212-316 294-399 (432)
359 PF09243 Rsm22: Mitochondrial 96.5 0.015 3.2E-07 60.9 9.8 97 211-316 33-142 (274)
360 COG2521 Predicted archaeal met 96.5 0.0014 3.1E-08 66.1 2.1 123 468-594 133-275 (287)
361 COG4627 Uncharacterized protei 96.4 0.00066 1.4E-08 64.4 -0.3 53 266-318 38-91 (185)
362 PLN02476 O-methyltransferase 96.4 0.018 3.9E-07 60.4 10.3 129 468-612 117-278 (278)
363 COG2519 GCD14 tRNA(1-methylade 96.4 0.024 5.3E-07 58.2 10.7 109 464-589 92-213 (256)
364 KOG1663 O-methyltransferase [S 96.4 0.021 4.6E-07 57.8 10.1 109 197-312 61-182 (237)
365 PLN02672 methionine S-methyltr 96.4 0.0095 2.1E-07 72.6 9.0 119 471-591 120-298 (1082)
366 COG0144 Sun tRNA and rRNA cyto 96.4 0.012 2.6E-07 63.9 8.7 107 208-315 153-290 (355)
367 TIGR02987 met_A_Alw26 type II 96.4 0.023 5E-07 64.8 11.4 20 212-231 32-51 (524)
368 COG0030 KsgA Dimethyladenosine 96.3 0.031 6.8E-07 57.9 11.0 85 197-285 18-105 (259)
369 KOG3420 Predicted RNA methylas 96.3 0.0082 1.8E-07 56.6 5.8 74 211-285 48-124 (185)
370 KOG1499 Protein arginine N-met 96.2 0.0063 1.4E-07 64.9 5.3 95 470-570 61-165 (346)
371 TIGR03439 methyl_EasF probable 96.2 0.037 8E-07 59.2 11.2 102 212-313 77-197 (319)
372 COG0742 N6-adenine-specific me 96.2 0.092 2E-06 51.9 12.9 136 177-314 10-155 (187)
373 KOG2904 Predicted methyltransf 96.1 0.074 1.6E-06 55.2 11.9 157 446-611 129-327 (328)
374 COG1092 Predicted SAM-dependen 96.0 0.018 4E-07 63.1 8.0 102 212-314 218-337 (393)
375 COG3897 Predicted methyltransf 96.0 0.02 4.3E-07 56.7 7.2 100 211-316 79-181 (218)
376 PF06080 DUF938: Protein of un 95.9 0.013 2.8E-07 58.6 5.7 134 472-611 28-204 (204)
377 KOG1500 Protein arginine N-met 95.9 0.025 5.3E-07 59.9 8.0 97 211-312 177-281 (517)
378 PRK11760 putative 23S rRNA C24 95.9 0.064 1.4E-06 57.6 11.2 91 210-312 210-304 (357)
379 COG0357 GidB Predicted S-adeno 95.9 0.11 2.5E-06 52.4 12.2 93 212-311 68-166 (215)
380 PF01596 Methyltransf_3: O-met 95.9 0.025 5.5E-07 56.7 7.5 130 468-612 44-205 (205)
381 KOG1975 mRNA cap methyltransfe 95.8 0.02 4.4E-07 60.5 6.8 138 442-592 97-258 (389)
382 KOG0820 Ribosomal RNA adenine 95.8 0.043 9.4E-07 56.8 8.9 82 197-285 46-133 (315)
383 PRK00536 speE spermidine synth 95.8 0.056 1.2E-06 56.3 9.8 110 443-571 51-170 (262)
384 PF12147 Methyltransf_20: Puta 95.7 0.045 9.8E-07 57.3 8.7 126 468-593 134-276 (311)
385 TIGR00308 TRM1 tRNA(guanine-26 95.7 0.044 9.6E-07 59.9 9.2 95 213-313 46-147 (374)
386 KOG2940 Predicted methyltransf 95.6 0.0074 1.6E-07 60.8 2.6 99 468-571 71-173 (325)
387 PF10294 Methyltransf_16: Puta 95.6 0.019 4.1E-07 55.9 5.3 100 468-572 44-156 (173)
388 PRK14896 ksgA 16S ribosomal RN 95.5 0.037 8E-07 57.3 7.6 71 470-543 30-102 (258)
389 PLN02823 spermine synthase 95.5 0.088 1.9E-06 56.8 10.5 101 468-571 102-219 (336)
390 PRK10909 rsmD 16S rRNA m(2)G96 95.5 0.03 6.4E-07 56.0 6.4 98 471-574 55-161 (199)
391 PF05958 tRNA_U5-meth_tr: tRNA 95.4 0.042 9E-07 59.6 7.9 121 187-314 172-311 (352)
392 COG1189 Predicted rRNA methyla 95.4 0.2 4.3E-06 51.2 11.9 131 211-351 79-220 (245)
393 COG4122 Predicted O-methyltran 95.3 0.059 1.3E-06 54.6 8.1 147 454-612 47-218 (219)
394 PRK00274 ksgA 16S ribosomal RN 95.3 0.017 3.7E-07 60.3 4.2 65 470-540 43-113 (272)
395 KOG1331 Predicted methyltransf 95.3 0.011 2.4E-07 61.4 2.8 115 443-571 25-142 (293)
396 KOG3201 Uncharacterized conser 95.3 0.0083 1.8E-07 57.5 1.6 102 212-314 30-141 (201)
397 PRK11760 putative 23S rRNA C24 95.3 0.2 4.3E-06 54.0 12.1 89 470-571 212-304 (357)
398 COG2518 Pcm Protein-L-isoaspar 95.2 0.038 8.2E-07 55.5 6.0 100 454-572 61-169 (209)
399 PF10672 Methyltrans_SAM: S-ad 95.2 0.039 8.5E-07 58.1 6.4 102 212-314 124-239 (286)
400 KOG2798 Putative trehalase [Ca 95.2 0.068 1.5E-06 56.4 8.0 79 274-354 258-336 (369)
401 PRK10611 chemotaxis methyltran 95.1 0.026 5.6E-07 59.6 4.9 122 442-574 95-264 (287)
402 PRK11933 yebU rRNA (cytosine-C 95.1 0.063 1.4E-06 60.4 8.3 96 471-571 115-241 (470)
403 PF01269 Fibrillarin: Fibrilla 95.1 0.17 3.8E-06 51.2 10.4 97 211-313 73-178 (229)
404 KOG1709 Guanidinoacetate methy 95.0 0.1 2.3E-06 52.4 8.5 108 196-312 89-205 (271)
405 COG1189 Predicted rRNA methyla 95.0 0.21 4.6E-06 51.0 10.9 116 469-593 79-221 (245)
406 COG0357 GidB Predicted S-adeno 95.0 0.33 7.2E-06 49.1 12.3 152 443-609 43-209 (215)
407 TIGR02085 meth_trns_rumB 23S r 95.0 0.18 3.9E-06 55.1 11.2 109 471-592 235-352 (374)
408 KOG2915 tRNA(1-methyladenosine 94.9 0.44 9.5E-06 49.6 12.7 106 198-312 94-208 (314)
409 TIGR00755 ksgA dimethyladenosi 94.7 0.042 9.1E-07 56.6 5.0 66 468-539 28-101 (253)
410 COG2520 Predicted methyltransf 94.6 0.16 3.4E-06 54.8 9.3 116 188-313 169-289 (341)
411 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.6 0.039 8.5E-07 58.0 4.7 106 208-314 82-220 (283)
412 KOG3178 Hydroxyindole-O-methyl 94.6 0.13 2.8E-06 55.1 8.4 100 469-573 177-276 (342)
413 PRK13699 putative methylase; P 94.5 0.48 1.1E-05 48.2 12.2 39 472-513 166-204 (227)
414 PF08704 GCD14: tRNA methyltra 94.4 0.15 3.3E-06 52.6 8.2 114 463-591 37-166 (247)
415 PRK00050 16S rRNA m(4)C1402 me 94.2 0.075 1.6E-06 56.3 5.6 44 199-244 9-57 (296)
416 PLN02668 indole-3-acetate carb 94.2 0.16 3.6E-06 55.6 8.4 78 212-290 64-176 (386)
417 PF00398 RrnaAD: Ribosomal RNA 94.0 0.22 4.8E-06 51.6 8.6 101 194-305 15-123 (262)
418 PF05971 Methyltransf_10: Prot 93.9 0.24 5.2E-06 52.5 8.8 94 193-286 81-188 (299)
419 COG1352 CheR Methylase of chem 93.9 0.22 4.8E-06 52.0 8.4 130 443-575 71-244 (268)
420 KOG2899 Predicted methyltransf 93.9 0.1 2.2E-06 53.4 5.6 103 469-572 58-209 (288)
421 COG0116 Predicted N6-adenine-s 93.9 0.45 9.8E-06 51.9 11.0 101 213-314 193-345 (381)
422 PF07942 N2227: N2227-like pro 93.8 0.66 1.4E-05 48.6 11.5 118 470-593 57-239 (270)
423 PF03492 Methyltransf_7: SAM d 93.6 0.3 6.6E-06 52.6 9.1 80 209-289 14-120 (334)
424 PF09445 Methyltransf_15: RNA 93.5 0.19 4.2E-06 48.6 6.6 69 214-283 2-77 (163)
425 PTZ00338 dimethyladenosine tra 93.4 0.089 1.9E-06 55.7 4.6 67 470-542 37-111 (294)
426 COG4798 Predicted methyltransf 93.4 0.18 3.8E-06 50.1 6.1 100 212-314 49-167 (238)
427 COG2263 Predicted RNA methylas 93.1 0.19 4.2E-06 49.6 5.9 85 470-556 46-132 (198)
428 PF09243 Rsm22: Mitochondrial 93.1 0.39 8.4E-06 50.3 8.7 121 468-592 32-164 (274)
429 PF13679 Methyltransf_32: Meth 93.0 0.97 2.1E-05 42.3 10.5 96 210-314 24-132 (141)
430 TIGR02143 trmA_only tRNA (urac 92.6 0.54 1.2E-05 51.1 9.2 106 473-592 201-330 (353)
431 PF13578 Methyltransf_24: Meth 92.4 0.055 1.2E-06 47.7 1.1 93 216-312 1-104 (106)
432 PF04672 Methyltransf_19: S-ad 92.4 0.4 8.6E-06 50.0 7.5 102 211-314 68-191 (267)
433 COG5459 Predicted rRNA methyla 92.4 0.84 1.8E-05 49.1 9.9 102 212-314 114-226 (484)
434 COG1092 Predicted SAM-dependen 91.9 0.33 7.2E-06 53.4 6.6 123 470-594 218-364 (393)
435 PF01269 Fibrillarin: Fibrilla 91.6 0.61 1.3E-05 47.4 7.5 132 470-609 74-224 (229)
436 COG0421 SpeE Spermidine syntha 91.6 0.56 1.2E-05 49.4 7.6 120 464-587 72-210 (282)
437 KOG3115 Methyltransferase-like 91.4 0.37 8.1E-06 48.1 5.6 111 472-585 63-197 (249)
438 PRK11727 23S rRNA mA1618 methy 91.3 0.67 1.4E-05 49.8 8.0 74 468-543 113-200 (321)
439 PF01564 Spermine_synth: Sperm 91.2 2.5 5.4E-05 43.6 11.9 164 443-613 55-239 (246)
440 COG4076 Predicted RNA methylas 91.1 0.22 4.9E-06 49.1 3.7 92 213-311 34-133 (252)
441 PF10354 DUF2431: Domain of un 90.9 1.7 3.7E-05 42.2 9.7 95 218-313 3-125 (166)
442 KOG1661 Protein-L-isoaspartate 90.9 0.43 9.2E-06 48.0 5.5 90 470-573 83-194 (237)
443 PF01234 NNMT_PNMT_TEMT: NNMT/ 90.8 0.77 1.7E-05 47.7 7.6 82 530-611 156-256 (256)
444 COG3129 Predicted SAM-dependen 90.7 0.47 1E-05 48.3 5.7 108 179-286 41-164 (292)
445 PRK05031 tRNA (uracil-5-)-meth 90.6 1.7 3.6E-05 47.5 10.4 107 472-592 209-339 (362)
446 COG1041 Predicted DNA modifica 90.5 1.1 2.4E-05 48.3 8.7 108 471-582 199-320 (347)
447 KOG2187 tRNA uracil-5-methyltr 90.4 0.36 7.9E-06 54.1 5.0 66 199-267 373-441 (534)
448 COG1889 NOP1 Fibrillarin-like 90.3 3.8 8.2E-05 41.2 11.4 98 210-313 75-180 (231)
449 PF13679 Methyltransf_32: Meth 90.2 0.31 6.7E-06 45.7 3.7 60 453-514 5-73 (141)
450 PF01861 DUF43: Protein of unk 90.0 7.8 0.00017 39.9 13.8 115 194-312 27-148 (243)
451 TIGR02987 met_A_Alw26 type II 89.9 2.4 5.3E-05 48.4 11.5 143 469-612 31-247 (524)
452 PRK00050 16S rRNA m(4)C1402 me 89.8 0.22 4.8E-06 52.8 2.8 69 471-539 21-97 (296)
453 COG1064 AdhP Zn-dependent alco 89.8 1.2 2.6E-05 48.1 8.2 93 210-315 165-261 (339)
454 KOG1122 tRNA and rRNA cytosine 89.4 1.7 3.6E-05 47.9 9.0 108 207-316 237-374 (460)
455 PRK11524 putative methyltransf 89.3 3.8 8.3E-05 43.0 11.5 211 271-513 23-249 (284)
456 PRK04338 N(2),N(2)-dimethylgua 89.1 0.43 9.4E-06 52.4 4.4 91 471-571 59-157 (382)
457 PF06859 Bin3: Bicoid-interact 88.9 0.2 4.3E-06 45.3 1.3 39 275-313 1-44 (110)
458 PF10672 Methyltrans_SAM: S-ad 88.9 0.6 1.3E-05 49.3 5.1 125 471-597 125-269 (286)
459 PLN02589 caffeoyl-CoA O-methyl 88.6 0.51 1.1E-05 48.8 4.3 96 468-570 78-188 (247)
460 KOG2198 tRNA cytosine-5-methyl 88.3 3.9 8.4E-05 44.5 10.7 116 197-314 138-297 (375)
461 TIGR01444 fkbM_fam methyltrans 88.3 0.86 1.9E-05 42.0 5.2 32 214-245 1-36 (143)
462 KOG3115 Methyltransferase-like 88.1 0.82 1.8E-05 45.8 5.1 100 213-313 62-183 (249)
463 COG4262 Predicted spermidine s 87.7 2.6 5.6E-05 45.7 8.8 100 212-314 290-408 (508)
464 COG4627 Uncharacterized protei 87.3 0.16 3.4E-06 48.7 -0.4 41 530-571 45-85 (185)
465 PF11968 DUF3321: Putative met 87.1 2.1 4.6E-05 43.3 7.5 108 471-594 53-179 (219)
466 TIGR03439 methyl_EasF probable 87.1 2.1 4.6E-05 45.9 8.0 98 472-571 79-196 (319)
467 PF02475 Met_10: Met-10+ like- 86.9 0.74 1.6E-05 46.1 4.2 108 442-569 83-199 (200)
468 PF03269 DUF268: Caenorhabditi 86.8 0.48 1E-05 45.7 2.6 42 273-314 61-112 (177)
469 KOG3987 Uncharacterized conser 86.7 0.37 8E-06 48.3 1.8 89 468-571 111-206 (288)
470 PF06962 rRNA_methylase: Putat 86.6 4 8.7E-05 38.6 8.6 81 234-315 2-94 (140)
471 KOG1500 Protein arginine N-met 86.2 1.7 3.7E-05 46.5 6.5 129 458-592 167-309 (517)
472 KOG3201 Uncharacterized conser 86.1 0.57 1.2E-05 45.3 2.7 116 470-593 30-163 (201)
473 COG5459 Predicted rRNA methyla 85.7 0.79 1.7E-05 49.3 3.8 99 473-573 117-226 (484)
474 KOG4589 Cell division protein 85.6 2.2 4.7E-05 42.3 6.5 90 212-312 70-183 (232)
475 PF04816 DUF633: Family of unk 85.6 4.5 9.8E-05 40.7 9.0 115 215-353 1-122 (205)
476 PF03059 NAS: Nicotianamine sy 85.4 5.9 0.00013 41.7 10.1 100 212-313 121-230 (276)
477 KOG1099 SAM-dependent methyltr 85.2 0.99 2.1E-05 46.0 4.0 91 212-313 42-163 (294)
478 COG0293 FtsJ 23S rRNA methylas 85.0 0.71 1.5E-05 46.4 2.9 132 470-611 46-200 (205)
479 PF06859 Bin3: Bicoid-interact 85.0 0.34 7.3E-06 43.8 0.5 60 533-592 2-72 (110)
480 PRK13699 putative methylase; P 84.8 2.2 4.7E-05 43.5 6.5 89 524-612 11-121 (227)
481 COG1889 NOP1 Fibrillarin-like 84.7 8.7 0.00019 38.7 10.2 135 470-612 77-229 (231)
482 KOG3191 Predicted N6-DNA-methy 84.3 15 0.00032 36.5 11.4 144 445-597 23-194 (209)
483 PF07757 AdoMet_MTase: Predict 83.7 1.7 3.6E-05 39.3 4.3 30 212-241 59-88 (112)
484 PF09445 Methyltransf_15: RNA 82.7 0.78 1.7E-05 44.5 2.1 112 471-588 1-136 (163)
485 PF01170 UPF0020: Putative RNA 81.5 1.7 3.7E-05 42.5 4.0 120 468-592 27-167 (179)
486 COG3963 Phospholipid N-methylt 81.4 2.9 6.2E-05 40.8 5.3 108 460-570 40-154 (194)
487 COG4301 Uncharacterized conser 81.3 16 0.00034 38.0 10.7 101 212-314 79-194 (321)
488 KOG1562 Spermidine synthase [A 81.2 2 4.4E-05 45.3 4.5 103 210-313 120-236 (337)
489 KOG0822 Protein kinase inhibit 80.4 6.3 0.00014 44.8 8.2 100 212-312 368-477 (649)
490 TIGR00095 RNA methyltransferas 80.2 1.2 2.7E-05 43.9 2.6 98 471-574 51-161 (189)
491 PF02384 N6_Mtase: N-6 DNA Met 80.1 2.7 5.8E-05 44.4 5.2 145 468-612 45-233 (311)
492 PRK10742 putative methyltransf 79.5 8.7 0.00019 39.8 8.5 84 200-285 77-174 (250)
493 KOG2793 Putative N2,N2-dimethy 78.6 13 0.00029 38.5 9.5 102 212-314 87-200 (248)
494 PF13578 Methyltransf_24: Meth 78.4 0.58 1.3E-05 41.1 -0.4 93 474-572 1-105 (106)
495 PF01189 Nol1_Nop2_Fmu: NOL1/N 78.3 2.1 4.6E-05 45.1 3.7 113 470-587 86-238 (283)
496 KOG1709 Guanidinoacetate methy 77.4 4.4 9.5E-05 41.1 5.4 111 448-571 84-205 (271)
497 COG4798 Predicted methyltransf 77.1 6.6 0.00014 39.3 6.4 106 463-573 45-167 (238)
498 COG0144 Sun tRNA and rRNA cyto 76.8 11 0.00023 41.2 8.7 102 470-571 157-287 (355)
499 TIGR00308 TRM1 tRNA(guanine-26 76.6 3.7 8.1E-05 45.0 5.1 91 472-571 47-146 (374)
500 COG0286 HsdM Type I restrictio 76.6 26 0.00056 39.9 12.0 117 195-314 172-327 (489)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=6.9e-148 Score=1187.83 Aligned_cols=500 Identities=65% Similarity=1.183 Sum_probs=485.0
Q ss_pred CcccCCCchhhhhh--hhhhhhhhccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccCCCCchhhHHHHhhhhhhc
Q 006905 99 EYTPCQDGKRSLKF--SRRRLIYRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRY 176 (626)
Q Consensus 99 ~y~pc~d~~~~~~~--~~~~~~~~~r~C~~~~~r~~Clvp~p~~y~~P~~wP~Srd~~w~~N~~~~~L~~~k~~q~W~~~ 176 (626)
||+||+|+.+++++ .++++.||||||||.++|++||||+|++|+.||+||+|||++||+|+||++|+.+|+.|||++.
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceecCCCCCCCCCcHHHHHHHHHHhhcc--CCCCCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNGADAYIDDIGKLINL--NDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALE 254 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l--~~~~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~e 254 (626)
+|+.+.|||||++|.+|+.+|+++|.++++. .++..+++||||||+|+|+++|++++|++|++++.+.+++++|+|.+
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999997 67788999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHH
Q 006905 255 RGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNK 334 (626)
Q Consensus 255 rg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~ 334 (626)
||+++.+.++..++|||++++||+|||++|+++|..+.+.+|.|++|+|||||||++++||.+ .++.+++.+
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~ 232 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEE 232 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHH
Confidence 999999988889999999999999999999999999889999999999999999999999986 356678888
Q ss_pred HHHHHHHHHHhhchhhhcccccEEEEeccCccccccccccCCCCCCCCC-CCCCCchhhhhccccccccccCCccccccC
Q 006905 335 EQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQKLSQNPPFCP-VQDPDKAWYTQMGTCLTRLPEVSSDRETAG 413 (626)
Q Consensus 335 ~~~~ie~l~~~l~w~~v~~~~~~aiw~KP~~~~~c~~~~~~~~~p~~C~-~~~~d~~wy~~l~~ci~~~p~~~~~~~~~~ 413 (626)
++..|++++++|||+++.++++++|||||.++ +||.+|+..+.|++|+ ++|||++||++|++||+++|++.+ +.++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~--~~~~ 309 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS--EIAG 309 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccc--cccc
Confidence 99999999999999999999999999999998 9999998888999999 899999999999999999998755 6788
Q ss_pred CccccCCcccccCCCccccCcccCCChhhchhhhHHHHHHHHHHHHhhh-hcCCCCCceeEEeccCchhhHhhhhhCCCe
Q 006905 414 GELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNN-QLGQSGRYRNILDMNAHLGGFAAALIDFPV 492 (626)
Q Consensus 414 ~~~~~wp~rl~~~p~~~~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~-~~~~~~~~r~vlD~g~g~G~faa~l~~~~v 492 (626)
+++++||+||+++|+||.++++.|+++|.|.+|+++|+++|++|++++. .+++ ++||||||||||+|||||||.+++|
T Consensus 310 ~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~-~~iRNVMDMnAg~GGFAAAL~~~~V 388 (506)
T PF03141_consen 310 GWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKW-GRIRNVMDMNAGYGGFAAALIDDPV 388 (506)
T ss_pred cCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccc-cceeeeeeecccccHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999887 5888 9999999999999999999999999
Q ss_pred EEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 493 WVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 493 ~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
|||||||+..+ |||++||||||||+||||||+|+|||||||||||+++||.+.+||++++||+||||||||||++||||
T Consensus 389 WVMNVVP~~~~-ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 389 WVMNVVPVSGP-NTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred eEEEecccCCC-CcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 99999999776 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 573 DVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 573 ~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
+.+++.+|++|+++|||+++++|+|+|++++||||||||
T Consensus 468 ~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 468 TVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred cHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999999999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.95 E-value=1.8e-28 Score=265.08 Aligned_cols=156 Identities=19% Similarity=0.317 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhhhh----cCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccc
Q 006905 449 LWKKRLSYYKTMNNQ----LGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCE 524 (626)
Q Consensus 449 ~w~~~v~~y~~~~~~----~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e 524 (626)
.+.+.+.+|...+.. +..++.+|++||+|||+|+|||+|.+++|.+|+++|.|.+++++++|+|||+..++.....
T Consensus 93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s 172 (506)
T PF03141_consen 93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS 172 (506)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcc
Confidence 344455555543332 2344899999999999999999999999999999999999999999999999766655445
Q ss_pred cCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC----------hHHHHHHHHHHHhCCCeeEE
Q 006905 525 AMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD----------VDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 525 ~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~----------~~~~~~~~~~~~~l~w~~~~ 593 (626)
...+|| ++||||||+.....+...- ..+|+|+|||||||||||++.+ .+.+.+|++++++|||+...
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred ccccCCccchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhe
Confidence 667788 9999999944443333221 2389999999999999999843 46799999999999999876
Q ss_pred eecCCCCCCcceEEEEEeccc
Q 006905 594 VDHEDGPLEREKLLFAVKLYW 614 (626)
Q Consensus 594 ~~~e~~~~~~e~~l~~~K~~w 614 (626)
. +..+.|+||+.=
T Consensus 251 ~--------~~~~aIwqKp~~ 263 (506)
T PF03141_consen 251 E--------KGDTAIWQKPTN 263 (506)
T ss_pred e--------eCCEEEEeccCC
Confidence 4 344999999763
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.87 E-value=6e-22 Score=220.54 Aligned_cols=327 Identities=14% Similarity=0.170 Sum_probs=176.3
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccc--cCCCCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAE--RLPYPSRA 275 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~--~Lpf~d~s 275 (626)
.+.+.+... ...+|||||||+|.++..|++. .++++|+++.++..+.. .......+.+...|.. .+|+++++
T Consensus 28 ~il~~l~~~--~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 28 EILSLLPPY--EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred HHHhhcCcc--CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCC
Confidence 344444332 2458999999999999999986 67888887755432211 1111224556666753 57788899
Q ss_pred eeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhccc
Q 006905 276 FDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEK 354 (626)
Q Consensus 276 FDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~ 354 (626)
||+|+|+.+++|+.++. ..++.++.|+|||||++++.............- .....++. ...+..++..-.+......
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~-~~~~~~~~-~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRK-NNPTHYRE-PRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccccc-CCCCeecC-hHHHHHHHHHheeccCCCC
Confidence 99999999997776543 689999999999999999975322110000000 00000000 1122223333222222111
Q ss_pred -ccEE-EEeccCccccccccccCCCCCCCCCCCCCCchhhhhccccccccccCCccccccCCccccCCcccccCCCcccc
Q 006905 355 -GDIA-IWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNAVPPRISK 432 (626)
Q Consensus 355 -~~~a-iw~KP~~~~~c~~~~~~~~~p~~C~~~~~d~~wy~~l~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~~~~~ 432 (626)
..+. ...++++ -|.. |...|..-+..- .+++. + .......+=+|+.-.++.|..
T Consensus 182 ~~~~~~~~~~~~~---~~~~--------------~~~~~~~~~~~~-~~~~~-----~-~~~~~~~~~~~~~y~~~~i~~ 237 (475)
T PLN02336 182 SFELSLVGCKCIG---AYVK--------------NKKNQNQICWLW-QKVSS-----T-NDKGFQRFLDNVQYKSSGILR 237 (475)
T ss_pred EEEEEEEEeechh---hhhh--------------ccCCcceEEEEE-EeecC-----C-cchhHHHHhhhhccccccHHH
Confidence 1111 1111111 1111 111111110000 00000 0 001111111221101111110
Q ss_pred CcccCCChhhchhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHH
Q 006905 433 GTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIY 511 (626)
Q Consensus 433 ~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~ 511 (626)
.+.|-.....+...|..-..++..+.. ....+|||+|||.|+++..|++. +. +|+.+|.++.++..+.
T Consensus 238 -------~~~f~g~~~~v~~~v~~te~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~ 306 (475)
T PLN02336 238 -------YERVFGEGFVSTGGLETTKEFVDKLDL-KPGQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFAL 306 (475)
T ss_pred -------HHHHhCCCCCCCchHHHHHHHHHhcCC-CCCCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHH
Confidence 111111111222223222333333322 33568999999999999999875 33 7999999999999987
Q ss_pred Hhcc-----cceec-cccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 512 ERGL-----VGTYT-NWCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 512 ~rgl-----i~~~~-~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
++.. +.+.+ |+.+ .++| .+||+|+|..++.|..+ .+.+|.|+.|+|||||.+++.|
T Consensus 307 ~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~I~s~~~l~h~~d---~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 307 ERAIGRKCSVEFEVADCTK--KTYPDNSFDVIYSRDTILHIQD---KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred HHhhcCCCceEEEEcCccc--CCCCCCCEEEEEECCcccccCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 7532 22222 3222 2355 78999999999988874 5899999999999999999985
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=6.6e-15 Score=149.21 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=82.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
++.+|||||||||.++..+++. .|+++|+++.|+..+..+........+.+.++|++.|||+|++||+|.+++.|.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 4669999999999999999986 688888877655543333222111227788999999999999999999999995
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.. +...+|+|+.|||||||.+++..
T Consensus 131 nv~-d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 131 NVT-DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred cCC-CHHHHHHHHHHhhcCCeEEEEEE
Confidence 554 57999999999999999998865
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.54 E-value=1.9e-14 Score=123.05 Aligned_cols=90 Identities=29% Similarity=0.465 Sum_probs=71.7
Q ss_pred EEeCCCCchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEeccccccccc
Q 006905 216 IDTGCGVASWGAYLLSR-N--IITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQ 290 (626)
Q Consensus 216 LDIGCGtG~~a~~La~~-~--V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~ 290 (626)
||+|||+|.++..|+++ . ++++|+ ++.+++.++++.. ...+...+...+|+++++||+|++..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~-----~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDI-----SEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES------HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeC-----CHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-c
Confidence 89999999999999998 4 555555 5567777766543 2447788899999999999999999999777 6
Q ss_pred cHHHHHHHHHhcccCCeEEEE
Q 006905 291 FGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 291 ~~~~~L~Ei~RvLKPGG~lvi 311 (626)
+...+++|+.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 679999999999999999986
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.53 E-value=3.2e-14 Score=144.69 Aligned_cols=101 Identities=26% Similarity=0.345 Sum_probs=73.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+.+|||+|||||.++..++++ .|+++|+++.++..+..+.......++.+.++|++.+||++++||+|+|++.++
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH
Confidence 559999999999999988875 578888877666655544443323368889999999999999999999999996
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+ +...+|+|+.|+|||||.+++..
T Consensus 128 n~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 128 NFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp G-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 655 46899999999999999999864
No 7
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.45 E-value=6.1e-12 Score=141.46 Aligned_cols=114 Identities=15% Similarity=0.237 Sum_probs=76.5
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHH----HHHHhcccceeccccccC----CCCC-Cccceeeec
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG----VIYERGLVGTYTNWCEAM----STYP-RTYDLIHAD 539 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~----~~~~rgli~~~~~~~e~~----~~yp-~t~Dlih~~ 539 (626)
.-..+||+|||.|.|...++...= -.|+++++...+-+. .+.++|+-. +.-.|..+ ..+| ++.|-||.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i- 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYI- 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEE-
Confidence 467799999999999999987631 128888887755333 444556522 22223332 2356 89999987
Q ss_pred cccc-------cCCCCCCHHHHHHHhhhhccCCcEEEE-EcChHHHHHHHHHHHh
Q 006905 540 SVFS-------LYKDRCETEDILLEMDRILRPEGGVIF-RDDVDELVKVKRIIDA 586 (626)
Q Consensus 540 ~~f~-------~~~~~c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~~~~~~~~ 586 (626)
.|. |.+.|=--+..|.++.|+|+|||.+.+ ||..+....+.+.+..
T Consensus 424 -~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 424 -LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred -ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 566 333343335799999999999999888 5777766665555444
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.42 E-value=4.7e-13 Score=134.25 Aligned_cols=155 Identities=23% Similarity=0.284 Sum_probs=109.8
Q ss_pred ccCCCCchh-hHHHHhhhhhhccCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--
Q 006905 156 YANVPHKEL-TVEKAVQNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-- 232 (626)
Q Consensus 156 ~~N~~~~~L-~~~k~~q~W~~~~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-- 232 (626)
..|+++..+ ...+..+.||+..++.-.- -.+......|+......- ..-.+.+|||||||.|.++..|+..
T Consensus 9 ~~~id~~e~~~F~~la~~wwd~~g~f~~L----H~~N~~rl~~i~~~~~~~--~~l~g~~vLDvGCGgG~Lse~mAr~Ga 82 (243)
T COG2227 9 TQNVDYKELDKFEALASRWWDPEGEFKPL----HKINPLRLDYIREVARLR--FDLPGLRVLDVGCGGGILSEPLARLGA 82 (243)
T ss_pred cccCCHHHHHHHHHHHhhhcCCCCceeee----eeeccchhhhhhhhhhcc--cCCCCCeEEEecCCccHhhHHHHHCCC
Confidence 345555555 3566678899877754333 123334445544333210 0123668999999999999999998
Q ss_pred CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 233 NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 233 ~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.|+++|+++..+..++ ..|.+.++.+.+....++++....++||+|+|..+++|.++ +..+++.+.+++||||.++++
T Consensus 83 ~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~d-p~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 83 SVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPD-PESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred eeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCC-HHHHHHHHHHHcCCCcEEEEe
Confidence 5777777665554433 34556677777777777787776689999999999999886 588999999999999999999
Q ss_pred eCCCCc
Q 006905 313 GPPINW 318 (626)
Q Consensus 313 ~pp~~w 318 (626)
....++
T Consensus 161 Tinrt~ 166 (243)
T COG2227 161 TINRTL 166 (243)
T ss_pred ccccCH
Confidence 875443
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.42 E-value=1.6e-12 Score=134.42 Aligned_cols=102 Identities=19% Similarity=0.136 Sum_probs=80.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHH--Hc-CCCeEEEEcccccCCCCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFAL--ER-GVPALIGVLAAERLPYPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~--er-g~~~~~~v~d~~~Lpf~d~sFDlV~~~~ 283 (626)
+.+|||+|||+|.++..|+++ .++++|+++.++..+..+... .. ...+.+..+|...+|+++++||+|+++.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 458999999999999888764 588888877666544332211 11 1246778888999999999999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++++. ++..++.|+.|+|||||+|++...
T Consensus 154 ~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 154 GLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 996665 578999999999999999999854
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.41 E-value=2.3e-12 Score=131.86 Aligned_cols=98 Identities=23% Similarity=0.397 Sum_probs=81.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
...+|||+|||+|.++..|++. .++++|+++ .+++.++++.....+..+|.+.+|+++++||+|+++.++ ||
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~-----~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l-~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSP-----PMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAV-QW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchh-hh
Confidence 3568999999999999988876 566776654 566667666544456778888999999999999999988 77
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..++..+|.++.|+|||||.++++.+
T Consensus 116 ~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 116 CGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 77789999999999999999999865
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.37 E-value=3.2e-12 Score=135.79 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=80.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
.+.+|||||||+|.++..|++. .|+++|+++.++..++.. +...+ ..+.+...+++.+++++++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3568999999999999999886 577777766554433322 11112 246677778888888888999999999998
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
|+.+ +..++.++.|+|||||.++++...
T Consensus 210 Hv~d-~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 210 HVAN-PAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred hcCC-HHHHHHHHHHHcCCCcEEEEEECC
Confidence 8775 689999999999999999998753
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.37 E-value=2.4e-12 Score=133.15 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=88.1
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcC---CCeEEEE
Q 006905 190 FPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERG---VPALIGV 263 (626)
Q Consensus 190 F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg---~~~~~~v 263 (626)
+..+..+..+.+.+.+.+.+ +.+|||||||+|..+..|++. .++++|+++. +++.++++. ..+.+..
T Consensus 33 ~~~gg~~~~~~~l~~l~l~~--~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~-----~~~~a~~~~~~~~~i~~~~ 105 (263)
T PTZ00098 33 ISSGGIEATTKILSDIELNE--NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEK-----MVNIAKLRNSDKNKIEFEA 105 (263)
T ss_pred CCCCchHHHHHHHHhCCCCC--CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHH-----HHHHHHHHcCcCCceEEEE
Confidence 33444445556666665444 458999999999999888764 5777777654 444444432 2466777
Q ss_pred cccccCCCCCCCeeEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 264 LAAERLPYPSRAFDMAHCSRCLIPWNQ-FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 264 ~d~~~Lpf~d~sFDlV~~~~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.|...+|+++++||+|++..+++|+.. +...+|+++.|+|||||+|+++.+
T Consensus 106 ~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 106 NDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 788888999999999999988878763 568999999999999999999864
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.36 E-value=3.9e-12 Score=136.36 Aligned_cols=102 Identities=23% Similarity=0.395 Sum_probs=82.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
.+.+|||||||+|.++..|+++ .|+++|+++.++..+. +.+.+.+. .+.+.++|...+|+++++||+|++..++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~-~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARAN-ALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 4568999999999999999875 6788888775544332 23333444 4678888998999999999999999999
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+.+ ...++.++.|+|||||.|++...
T Consensus 197 ~h~~d-~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 197 EHMPD-KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred hccCC-HHHHHHHHHHHcCCCcEEEEEEe
Confidence 88765 58999999999999999999753
No 14
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.33 E-value=1.1e-12 Score=112.01 Aligned_cols=90 Identities=26% Similarity=0.376 Sum_probs=71.8
Q ss_pred EeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcccc---eeccccccCCCCC-CccceeeeccccccCCCC
Q 006905 474 LDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGLVG---TYTNWCEAMSTYP-RTYDLIHADSVFSLYKDR 548 (626)
Q Consensus 474 lD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgli~---~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~ 548 (626)
||+|||.|.++..|+++ +. +|+.+|.++.+++.+.++.... ..+.=.+.+ ++| ++||+|++..+|.+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-SS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHHhC-ccccccccccccccceeec---
Confidence 89999999999999999 55 8999999999999999988633 333222333 344 999999999999998
Q ss_pred CCHHHHHHHhhhhccCCcEEEE
Q 006905 549 CETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 549 c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
.+...+|.|+.|+|||||+++|
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 3668999999999999999986
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.31 E-value=7.8e-12 Score=128.46 Aligned_cols=94 Identities=26% Similarity=0.300 Sum_probs=75.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
+.+|||||||+|.++..|+++ .++++|+++ .+++.|+++++ .+..+|.+.++ ++++||+|+|+.+++|
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~-----~~~~~a~~~~~--~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 101 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP-----EMVAAARERGV--DARTGDVRDWK-PKPDTDVVVSNAALQW 101 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHhcCC--cEEEcChhhCC-CCCCceEEEEehhhhh
Confidence 468999999999999999875 577777755 56666666654 46667777764 5679999999999954
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..++..+++++.++|||||+|++..+
T Consensus 102 -~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 102 -VPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred -CCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 45678999999999999999999754
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.29 E-value=3e-11 Score=121.73 Aligned_cols=112 Identities=23% Similarity=0.306 Sum_probs=82.6
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYP 272 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~ 272 (626)
+.+.+.+.... +.+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+. .+.+...|...++++
T Consensus 35 ~~~l~~l~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 35 KDTMKRMNVQA--GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVK-DAGLHNVELVHGNAMELPFD 111 (231)
T ss_pred HHHHHhcCCCC--CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-hcCCCceEEEEechhcCCCC
Confidence 34444444333 458999999999999888764 57888887755543333322 2233 356677788888888
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++||+|++..++++. .+...++.++.|+|+|||++++..+
T Consensus 112 ~~~fD~V~~~~~l~~~-~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNV-PDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCccEEEEecccccC-CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8999999999988544 4568999999999999999998754
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.28 E-value=2.4e-11 Score=120.45 Aligned_cols=99 Identities=16% Similarity=0.292 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
..+|||+|||+|.++..|+++ .|+++|+++.++..+... +...++. +.+.+.|...++++ ++||+|+|+.++++.
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERI-KAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL 108 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-HHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhC
Confidence 358999999999999999987 578888877655544332 3344443 55666677666664 579999999998554
Q ss_pred cc-cHHHHHHHHHhcccCCeEEEEE
Q 006905 289 NQ-FGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 289 ~~-~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.. +...++.++.|+|||||++++.
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 43 3478999999999999997654
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.27 E-value=2.4e-11 Score=107.99 Aligned_cols=101 Identities=21% Similarity=0.247 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCchHHHHHhh--C--CcEEEeCCccchHHHHHHHHHH-cCCCeEEEEccc-ccCCCCCCCeeEEEecc-c
Q 006905 212 IRTAIDTGCGVASWGAYLLS--R--NIITMSFAPRDTHEAQVQFALE-RGVPALIGVLAA-ERLPYPSRAFDMAHCSR-C 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~--~--~V~avdis~~dls~a~i~~A~e-rg~~~~~~v~d~-~~Lpf~d~sFDlV~~~~-~ 284 (626)
+.+|||||||+|.++..+++ . .++++|+++.++..++.+.... ....+.+...|. ..... .+.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 45899999999999999998 3 6888999886666555444222 234677887777 33333 34699999998 5
Q ss_pred ccccc--ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWN--QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~--~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++++. ++...++.++.+.|+|||+|++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 54343 334789999999999999999974
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.25 E-value=4.1e-11 Score=118.53 Aligned_cols=99 Identities=14% Similarity=0.257 Sum_probs=75.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
..+|||+|||+|.++.+|+++ .|+++|+++.++..+. +.+...++++...+.+....+++ ++||+|+++.+++++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQ 108 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCC
Confidence 348999999999999999987 5888888775555433 23445566666666666555654 5799999999986665
Q ss_pred c-cHHHHHHHHHhcccCCeEEEEE
Q 006905 290 Q-FGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 290 ~-~~~~~L~Ei~RvLKPGG~lvis 312 (626)
. +...++.++.|+|||||++++.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3 3378999999999999996664
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.25 E-value=2.8e-11 Score=124.42 Aligned_cols=113 Identities=20% Similarity=0.118 Sum_probs=82.5
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC-CCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP-YPSR 274 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp-f~d~ 274 (626)
.+.+++........+|||+|||+|.++..|+++ .|+++|+++.++..++. .+.+.+. .+.+..++...++ ++++
T Consensus 33 ~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 33 DLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 444555432334568999999999999999987 57788887755554332 2333443 3566667776664 6678
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+||+|+|..+++|+ .++..++.++.|+|||||++++...
T Consensus 112 ~fD~V~~~~vl~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 112 PVDLILFHAVLEWV-ADPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred CCCEEEehhHHHhh-CCHHHHHHHHHHHcCCCeEEEEEEE
Confidence 99999999998555 4568999999999999999998753
No 21
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.25 E-value=2.7e-11 Score=121.81 Aligned_cols=105 Identities=20% Similarity=0.185 Sum_probs=84.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhhC----------CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEcccccCCCCC
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLSR----------NIITMSFAPRDTHEAQVQFALERGV----PALIGVLAAERLPYPS 273 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~~----------~V~avdis~~dls~a~i~~A~erg~----~~~~~v~d~~~Lpf~d 273 (626)
.++.+.++||++||||.++..+.+. +|+++|+++.++..+.. .+.++++ ...+..+|++.|||++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq-Ra~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ-RAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH-HHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 4455679999999999888887764 68999998877765443 3434443 2667888999999999
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+.+.++.+..+.+ ..+.|+|++|||||||.|.+-..
T Consensus 176 ~s~D~yTiafGIRN~th-~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTH-IQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred CcceeEEEecceecCCC-HHHHHHHHHHhcCCCcEEEEEEc
Confidence 99999999999866665 69999999999999999998654
No 22
>PRK05785 hypothetical protein; Provisional
Probab=99.25 E-value=5e-11 Score=120.75 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
..+|||||||+|.++..|++. .++++|+++ .+++.|+++. .+.+++++.+|+++++||+|+++.+++|+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~-----~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE-----NMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH-----HHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 458999999999999999886 567777655 4555565543 24567888999999999999999999655
Q ss_pred cccHHHHHHHHHhcccCCe
Q 006905 289 NQFGGIYLIEVDRVLRPGG 307 (626)
Q Consensus 289 ~~~~~~~L~Ei~RvLKPGG 307 (626)
.++..+++|+.|+|||.+
T Consensus 124 -~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 -DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CCHHHHHHHHHHHhcCce
Confidence 457999999999999953
No 23
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.25 E-value=5.1e-11 Score=121.20 Aligned_cols=102 Identities=16% Similarity=0.089 Sum_probs=76.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEcccccCCCCCCCeeEEEecc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR------NIITMSFAPRDTHEAQVQFALER-GVPALIGVLAAERLPYPSRAFDMAHCSR 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~------~V~avdis~~dls~a~i~~A~er-g~~~~~~v~d~~~Lpf~d~sFDlV~~~~ 283 (626)
+..+|||||||+|.++..++++ .++++|+++.++..+..+..... ...+.+..+|...++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 3558999999999999888763 48888887765554443322111 23467778888888765 489999999
Q ss_pred cccccccc-HHHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQF-GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++|+... ...++.++.|+|||||.|+++.+
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99666532 37899999999999999999854
No 24
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.25 E-value=2.1e-11 Score=114.66 Aligned_cols=108 Identities=26% Similarity=0.488 Sum_probs=78.2
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSR 274 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~ 274 (626)
+.+.+.++.+. .....+|||||||+|.++..|++. .++++|+++.++. . ........+....+.+++
T Consensus 9 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~ 77 (161)
T PF13489_consen 9 YADLLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIE-----K-----RNVVFDNFDAQDPPFPDG 77 (161)
T ss_dssp HHHHHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHH-----H-----TTSEEEEEECHTHHCHSS
T ss_pred HHHHHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHh-----h-----hhhhhhhhhhhhhhcccc
Confidence 34445555542 233569999999999999999887 5667777553332 2 222333333445556788
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
+||+|+|+.+++|.. ++..+|.++.++|||||+++++.+..
T Consensus 78 ~fD~i~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 78 SFDLIICNDVLEHLP-DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SEEEEEEESSGGGSS-HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred chhhHhhHHHHhhcc-cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999999999997766 57999999999999999999997643
No 25
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.22 E-value=1.1e-10 Score=124.43 Aligned_cols=101 Identities=23% Similarity=0.205 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHH-HcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFAL-ERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~-erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
.+++|||||||+|.++..|++. .|+++|.++.++......... ....++.+..++.+.+|+ +++||+|+|..+++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 3569999999999999999886 378888776544322111111 112356777788888998 78899999999997
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|.. ++..+|+++.++|+|||.|+++.
T Consensus 201 H~~-dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 201 HRR-SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ccC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 765 46899999999999999999974
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.22 E-value=5.5e-11 Score=122.05 Aligned_cols=96 Identities=23% Similarity=0.309 Sum_probs=76.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
+.+|||||||+|.++..|++. .++++|+++ .+++.++++...+.+...|...++ ++++||+|+++.++ |
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~-----~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l-~ 104 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSP-----AMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASL-Q 104 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccCh-h
Confidence 568999999999999998874 577777755 456666665545667777776654 45689999999998 5
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|..+...+++++.++|||||.|++..+
T Consensus 105 ~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 555678999999999999999999754
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.22 E-value=7.7e-11 Score=118.18 Aligned_cols=97 Identities=27% Similarity=0.385 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
..+|||+|||+|.++..|++. .++++|+++ .+++.+.++.. .+.+...|...+++++++||+|+++.++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l- 108 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISA-----GMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLAL- 108 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChH-----HHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhh-
Confidence 468999999999999999876 357777754 44445544432 3566777888888888999999999998
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+..+...++.++.++|+|||.+++..+
T Consensus 109 ~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 109 QWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5555578999999999999999999865
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.21 E-value=7e-11 Score=111.74 Aligned_cols=100 Identities=26% Similarity=0.300 Sum_probs=77.6
Q ss_pred CCEEEEeCCCCchHHHHHhh-----CCcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC--CCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLS-----RNIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP--YPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~-----~~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp--f~d~sFDlV~~~~ 283 (626)
..+|||+|||+|.++..|++ ..++++|+++.++..+.. .+.+.+.+ +.+.+.|...++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 45899999999999999993 258888887755543332 33344554 888888988777 66 7899999999
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++++ ..+...+++++.++|++||.+++..+
T Consensus 82 ~l~~-~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 82 VLHH-FPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp TGGG-TSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhh-ccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 8844 44568999999999999999999864
No 29
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.20 E-value=8.1e-11 Score=119.66 Aligned_cols=180 Identities=19% Similarity=0.238 Sum_probs=119.3
Q ss_pred CCCCCCCCCcHHHHHHHHHHhhccC-----C-CCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc
Q 006905 184 PGGGTMFPNGADAYIDDIGKLINLN-----D-GSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER 255 (626)
Q Consensus 184 p~ggt~F~~ga~~yi~~L~~ll~l~-----~-~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er 255 (626)
-|.|+||--..+.+ .+++... + ....++||||+|.|..+..|+.. .|.++++++ .|+....++
T Consensus 65 LgRG~MFvfS~~Q~----~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~-----~Mr~rL~~k 135 (265)
T PF05219_consen 65 LGRGSMFVFSEEQF----RKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASP-----PMRWRLSKK 135 (265)
T ss_pred hcCCcEEEecHHHH----HHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCH-----HHHHHHHhC
Confidence 35566664444433 3444322 1 23568999999999999999886 788888865 455666778
Q ss_pred CCCeEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe-CCCCcccccc--cccchhhhh
Q 006905 256 GVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG-PPINWKKHAR--GWQRTKEDL 332 (626)
Q Consensus 256 g~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~-pp~~w~~~~~--~w~~~~e~l 332 (626)
|..+ .+...+.-.+..||+|.|.++| .-.+.|..+|+++++.|+|+|.++++. -|.....+.. .+.++.+.+
T Consensus 136 g~~v----l~~~~w~~~~~~fDvIscLNvL-DRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l 210 (265)
T PF05219_consen 136 GFTV----LDIDDWQQTDFKFDVISCLNVL-DRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELL 210 (265)
T ss_pred CCeE----EehhhhhccCCceEEEeehhhh-hccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhc
Confidence 8543 2333344345689999999988 666778999999999999999999974 4444333333 255555555
Q ss_pred HHHHHHHHHHHHhhchhhhcccccEEEEeccCccccccccccCCCCCCCCCCCCCCchhh
Q 006905 333 NKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWY 392 (626)
Q Consensus 333 ~~~~~~ie~l~~~l~w~~v~~~~~~aiw~KP~~~~~c~~~~~~~~~p~~C~~~~~d~~wy 392 (626)
.-....+|+.+.++- .++++..+.+ .-+. +-|++|++|...++|+
T Consensus 211 ~~~g~~~E~~v~~l~--~v~~p~GF~v--------~~~t-----r~PYLcEGD~~~~~Y~ 255 (265)
T PF05219_consen 211 PVKGATFEEQVSSLV--NVFEPAGFEV--------ERWT-----RLPYLCEGDLYQSYYV 255 (265)
T ss_pred CCCCCcHHHHHHHHH--HHHHhcCCEE--------EEEe-----ccCccccCcccCceEE
Confidence 444455666666665 4556655542 2222 3499999887766554
No 30
>PRK08317 hypothetical protein; Provisional
Probab=99.20 E-value=4e-10 Score=112.75 Aligned_cols=116 Identities=24% Similarity=0.327 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERL 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~L 269 (626)
..+.+.+.+.+.... +.+|||+|||+|.++..+++. .++++|+++..+..+..+ .......+.+...|...+
T Consensus 5 ~~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 5 RRYRARTFELLAVQP--GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHHcCCCC--CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccccC
Confidence 345555666655443 458999999999999888764 578888866433322221 111233466777788888
Q ss_pred CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++++++||+|++..+++|+.+ +..+++++.++|||||++++..+
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLED-PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCCceEEEEechhhccCC-HHHHHHHHHHHhcCCcEEEEEec
Confidence 888899999999999966654 68999999999999999999865
No 31
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.19 E-value=8.1e-11 Score=120.59 Aligned_cols=116 Identities=17% Similarity=0.128 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhh------CCcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccc
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS------RNIITMSFAPRDTHEAQVQFALERGV--PALIGVLAA 266 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~------~~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~ 266 (626)
+.....+..++......+.+|||||||+|..+..|++ ..++++|+++.++..+..+... .+. .+.+..++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v~~~~~d~ 118 (247)
T PRK15451 40 SNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDVIEGDI 118 (247)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEeCCh
Confidence 3333344444332223456899999999999887765 2688888888666655544432 222 466777787
Q ss_pred ccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 267 ERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 267 ~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+|++ .+|+|+++.++++...+. ..+++++.|+|||||.|+++.
T Consensus 119 ~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 119 RDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 777764 499999999996665432 689999999999999999985
No 32
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.19 E-value=7.9e-11 Score=122.33 Aligned_cols=92 Identities=22% Similarity=0.377 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-------NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-------~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
..+|||+|||+|.++..|++. .++++|+ ++.+++.|.++...+.+.++|...+|+++++||+|++..+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~-----s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDI-----SKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECC-----CHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC
Confidence 457999999999999988764 2466666 4466677777666677888899999999999999998654
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
. ..+.|+.|+|||||+|++..+..
T Consensus 161 ~--------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 P--------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred C--------CCHHHHHhhccCCCEEEEEeCCC
Confidence 1 24689999999999999987643
No 33
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.18 E-value=6.1e-11 Score=115.89 Aligned_cols=140 Identities=25% Similarity=0.339 Sum_probs=100.3
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC-CCCCCee
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP-YPSRAFD 277 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp-f~d~sFD 277 (626)
.|.++++ + +.+|||+|||.|.+..+|.+. ++.+.++ +++.+.+..+.++|+++.-..++ +.|+ |++++||
T Consensus 6 ~I~~~I~--p--gsrVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld-~gL~~f~d~sFD 77 (193)
T PF07021_consen 6 IIAEWIE--P--GSRVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLD-EGLADFPDQSFD 77 (193)
T ss_pred HHHHHcC--C--CCEEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHH-HhHhhCCCCCcc
Confidence 3555542 3 458999999999999999984 6766666 56677888899999875544333 3354 9999999
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC-Cccccc---------------ccccchhhhhHHHHHHHHH
Q 006905 278 MAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPI-NWKKHA---------------RGWQRTKEDLNKEQTAIEN 341 (626)
Q Consensus 278 lV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~-~w~~~~---------------~~w~~~~e~l~~~~~~ie~ 341 (626)
.|+++.++.+... +..+|.|+.|+ |...+++.|.. +|..+. ..|..|+.-..-....+++
T Consensus 78 ~VIlsqtLQ~~~~-P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~ 153 (193)
T PF07021_consen 78 YVILSQTLQAVRR-PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFED 153 (193)
T ss_pred EEehHhHHHhHhH-HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHH
Confidence 9999999966654 78999999777 55677776654 354331 1477777766666677777
Q ss_pred HHHhhchhhh
Q 006905 342 VAKSLCWEKI 351 (626)
Q Consensus 342 l~~~l~w~~v 351 (626)
+.+..+++.+
T Consensus 154 lc~~~~i~I~ 163 (193)
T PF07021_consen 154 LCRELGIRIE 163 (193)
T ss_pred HHHHCCCEEE
Confidence 7777665433
No 34
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=1.8e-10 Score=128.75 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=78.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
++.+|||||||+|.++..|++. .++++|+++.++..+..+ +......+.+.+.|...+++++++||+|+|..+++|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 3568999999999998888875 578888866444332221 112233467778888888888889999999999977
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.+ +..+|.++.|+|||||.+++..+
T Consensus 345 ~~d-~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 345 IQD-KPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred cCC-HHHHHHHHHHHcCCCeEEEEEEe
Confidence 764 68999999999999999999864
No 35
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.17 E-value=1.1e-11 Score=108.35 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=56.0
Q ss_pred EEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC-C-CCCCeeEEEecccccccc
Q 006905 216 IDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP-Y-PSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 216 LDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp-f-~d~sFDlV~~~~~l~h~~ 289 (626)
||||||+|.++..++++ .++++|+++.++..+..++................... . ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999998888775 78999999988754444444333333333333322221 1 23599999999999777
Q ss_pred ccHHHHHHHHHhcccCCeEE
Q 006905 290 QFGGIYLIEVDRVLRPGGYW 309 (626)
Q Consensus 290 ~~~~~~L~Ei~RvLKPGG~l 309 (626)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 66789999999999999986
No 36
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.17 E-value=3.4e-11 Score=106.00 Aligned_cols=92 Identities=29% Similarity=0.470 Sum_probs=67.5
Q ss_pred EEEeCCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccc-cc
Q 006905 215 AIDTGCGVASWGAYLLSR-------NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRC-LI 286 (626)
Q Consensus 215 VLDIGCGtG~~a~~La~~-------~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~-l~ 286 (626)
|||+|||+|..+..+.+. .++++|+++.++..+..+. .+.+.++.+.+.|...+++.+++||+|+|+.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~-~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRF-SEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHS-HHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhc-hhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999998888754 5677777664444332222 22456889999999999988899999999655 76
Q ss_pred cccccH-HHHHHHHHhcccCCe
Q 006905 287 PWNQFG-GIYLIEVDRVLRPGG 307 (626)
Q Consensus 287 h~~~~~-~~~L~Ei~RvLKPGG 307 (626)
|+.++. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 765433 789999999999998
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.16 E-value=1.3e-10 Score=120.96 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=72.7
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHH----HcCCC--eEEEEcccccCCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFAL----ERGVP--ALIGVLAAERLPY 271 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~----erg~~--~~~~v~d~~~Lpf 271 (626)
+.+.+.+.+.+ +.+|||||||.|.++.+++++ ++.++.+ .+++.|.+.++ +.|+. +.+...|...++.
T Consensus 52 ~~~~~~~~l~~--G~~vLDiGcGwG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 52 DLLCEKLGLKP--GDRVLDIGCGWGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG 126 (273)
T ss_dssp HHHHTTTT--T--T-EEEEES-TTSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred HHHHHHhCCCC--CCEEEEeCCCccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC
Confidence 34444554554 459999999999999999998 6555555 44666666654 44553 5666666666553
Q ss_pred CCCCeeEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEe
Q 006905 272 PSRAFDMAHCSRCLIPWNQ-FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+||.|++..+++|... +...+++++.++|||||.+++..
T Consensus 127 ---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 127 ---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred ---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 8999999999999864 34899999999999999999853
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.16 E-value=2.1e-10 Score=120.22 Aligned_cols=99 Identities=16% Similarity=0.281 Sum_probs=75.7
Q ss_pred CEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQ 290 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~ 290 (626)
.+|||+|||+|.++.+|+++ .|+++|+++..+..+ .+.+...++.+.+.+.|....++ +++||+|+++.++++...
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~-~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENL-QEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHH-HHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 47999999999999999887 678888877555432 33455567766677677665555 678999999999866543
Q ss_pred -cHHHHHHHHHhcccCCeEEEEEe
Q 006905 291 -FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 291 -~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+...+++++.|+|+|||++++..
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33789999999999999977753
No 39
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.15 E-value=2.3e-10 Score=118.54 Aligned_cols=101 Identities=22% Similarity=0.218 Sum_probs=76.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
+.+|||||||+|..+..++.. .++++|+++.++..+... ....+. .+.+...+.+.+++++++||+|+++.++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~-~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN-ARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH-HHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 559999999999876655543 488888877555443322 223343 4566777888899988999999999888
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++. .+...++.++.|+|||||.|++++.
T Consensus 157 ~~~-~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 157 NLS-PDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred cCC-CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 554 4468899999999999999999753
No 40
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.14 E-value=2.7e-10 Score=120.68 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=73.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHH---cCCCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSRN---IITMSFAPRDTHEAQVQFALE---RGVPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~~---V~avdis~~dls~a~i~~A~e---rg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
.+++|||||||+|.++..++..+ |+++|.++.++... +.++. ....+.+..++.+.+|.. .+||+|+|+.+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 35699999999999998888763 67777766544321 12211 122455666677778764 48999999999
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++|+. ++..+|+++.|+|||||.|++..
T Consensus 198 L~H~~-dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 198 LYHRK-SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred hhccC-CHHHHHHHHHHhcCCCCEEEEEE
Confidence 98875 46899999999999999999974
No 41
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.14 E-value=5.5e-10 Score=119.36 Aligned_cols=99 Identities=23% Similarity=0.247 Sum_probs=76.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
..+|||||||+|.++..+++. .++++|+++.++..+..+.. ...+.+..+|.+.+++++++||+|+++.++++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 458999999999988887663 57888886654443332211 12345677788889999999999999999977
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.+ ...+|+++.|+|||||.+++..+
T Consensus 191 ~~d-~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 191 WPD-PQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCC-HHHHHHHHHHhcCCCcEEEEEEe
Confidence 665 58899999999999999998753
No 42
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.12 E-value=1.3e-10 Score=118.20 Aligned_cols=99 Identities=21% Similarity=0.252 Sum_probs=83.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceeccccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-.+|||++||+|-+|..+++.-= .-.|+.+|.+++||.++.+|-. |..++.-.|.++ || +|||+|-++..+
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fgl 129 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGL 129 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeehh
Confidence 56799999999999999987621 5589999999999999999987 234566667777 77 999999997777
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
-+.. +++.+|.||.|||||||.+++-|-
T Consensus 130 rnv~---d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 130 RNVT---DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred hcCC---CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 7666 679999999999999999998753
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.12 E-value=1.3e-09 Score=107.48 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcc--cceecc
Q 006905 448 ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGL--VGTYTN 521 (626)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgl--i~~~~~ 521 (626)
..|++++-.-..+...+.. -.+|||+|||+|.++..++... -...|+.+|.++.+++.+.+ .|+ +.+++.
T Consensus 27 ~~~~~~~~d~l~l~~~l~~---g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~ 102 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPG---GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHHhhcCC---CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence 4888888544444444544 3579999999999998887421 12379999999888876654 344 344443
Q ss_pred ccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE--EeecCCC
Q 006905 522 WCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ--IVDHEDG 599 (626)
Q Consensus 522 ~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~--~~~~e~~ 599 (626)
-.+.+.. ..+||+|.+.. -.+++.++.++.|+|||||.+++-+.......+..++..+-|.+. +.-+-.|
T Consensus 103 d~~~~~~-~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 103 RAEEFGQ-EEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred cHhhCCC-CCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 3344433 47999999853 236789999999999999999999988889999999999999865 2222334
Q ss_pred CCCcceEEEEEec
Q 006905 600 PLEREKLLFAVKL 612 (626)
Q Consensus 600 ~~~~e~~l~~~K~ 612 (626)
-.++-.+.|.+|+
T Consensus 175 ~~~~~~~~~~~~~ 187 (187)
T PRK00107 175 LDGERHLVIIRKK 187 (187)
T ss_pred CCCcEEEEEEecC
Confidence 4445567777774
No 44
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=2.6e-10 Score=111.62 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=77.8
Q ss_pred EEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeE-EEEcccccCC-CCCCCeeEEEeccccccc
Q 006905 214 TAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPAL-IGVLAAERLP-YPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~-~~v~d~~~Lp-f~d~sFDlV~~~~~l~h~ 288 (626)
.+|+||||||..-.++.-. .|+.+|.++.+-.-+....+..+..... +++++.+.+| .+++++|.|+|..+| ..
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL-CS 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL-CS 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE-ec
Confidence 5899999999766665532 5777777665554444444444444555 7888899998 899999999999998 66
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+++.+.|.|+.|+|||||.+++..+
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 77789999999999999999999754
No 45
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.11 E-value=5.4e-10 Score=110.18 Aligned_cols=100 Identities=19% Similarity=0.356 Sum_probs=78.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
..++||+|||.|..+.+|+++ .|+++|.++..+.. ..+.|.+.++++...+.|.....++ +.||+|++..++++..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence 458999999999999999998 57888888755543 4567778899988888887777765 6799999988886665
Q ss_pred ccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 290 QFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 290 ~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+. ..++..+...++|||++++..
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 544 678999999999999999854
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.09 E-value=1.4e-09 Score=107.15 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=82.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+.+|||+|||+|.++..++.+ .|+++|.++.++..+.. .+++.+. .+.+...+...++. +++||+|+++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 568999999999988887753 68888887765554433 3334454 36777778777776 779999999652
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhh
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEK 350 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~ 350 (626)
.+...++.++.++|||||++++...+.. ...++++++.++|..
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~------------------~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDP------------------EEEIAELPKALGGKV 164 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCCh------------------HHHHHHHHHhcCceE
Confidence 2357899999999999999999854321 233666667777753
No 47
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.08 E-value=7.9e-10 Score=109.00 Aligned_cols=198 Identities=19% Similarity=0.240 Sum_probs=128.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
.++|.|+|||+|.-+..|+++ .....++ |.+.+|+..|+.+.+++.|..+|...+. ++..+|+++++.+| ||.
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~Gi---DsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAvl-qWl 105 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGI---DSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAVL-QWL 105 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeec---cCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhhh-hhc
Confidence 568999999999999999998 3333344 4566788888899999999988877765 56789999999998 898
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhcccccEEEEeccCccccc
Q 006905 290 QFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNC 369 (626)
Q Consensus 290 ~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~~~~aiw~KP~~~~~c 369 (626)
.+-..+|..+...|.|||.|.+..|... ... ....|++.++...|......... .++|+-...-
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN~--------dep------sH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~ 169 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDNL--------DEP------SHRLMRETADEAPFAQELGGRGL--TRAPLPSPAA 169 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCcc--------Cch------hHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHH
Confidence 8779999999999999999999876321 111 12235666666667665543322 3666654444
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhccccccccccCC-ccccccCCccccCCcccccCCCccccCcccCCChhhchhhhH
Q 006905 370 KTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVS-SDRETAGGELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSE 448 (626)
Q Consensus 370 ~~~~~~~~~p~~C~~~~~d~~wy~~l~~ci~~~p~~~-~~~~~~~~~~~~wp~rl~~~p~~~~~~~~~~~~~~~f~~d~~ 448 (626)
|-.+ -.+.-|+-|-=...||.+| |... ..+.+.+..+.+|=++| |.+
T Consensus 170 Yy~l---La~~~~rvDiW~T~Y~h~l-------~~a~aIvdWvkgTgLrP~L~~L----------------------~e~ 217 (257)
T COG4106 170 YYEL---LAPLACRVDIWHTTYYHQL-------PGADAIVDWVKGTGLRPYLDRL----------------------DEE 217 (257)
T ss_pred HHHH---hCcccceeeeeeeeccccC-------CCccchhhheeccccceecccc----------------------CHH
Confidence 4322 1133444332233344333 3221 12344444444444444 345
Q ss_pred HHHHHHHHHHHhhh
Q 006905 449 LWKKRLSYYKTMNN 462 (626)
Q Consensus 449 ~w~~~v~~y~~~~~ 462 (626)
.|+.-...|..++.
T Consensus 218 ~~~~FL~~Y~~~l~ 231 (257)
T COG4106 218 ERQRFLDRYLALLA 231 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777788887765
No 48
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.07 E-value=1e-09 Score=109.48 Aligned_cols=108 Identities=17% Similarity=0.076 Sum_probs=77.7
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP 272 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~ 272 (626)
.++.+.+.+.... ...+|||||||+|.++..|++. .++++|+++ .+++.|+++...+.+.+++... |++
T Consensus 30 ~~~~~~~~l~~~~-~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~-----~~l~~A~~~~~~~~~~~~d~~~-~~~ 102 (204)
T TIGR03587 30 KLAMFARALNRLP-KIASILELGANIGMNLAALKRLLPFKHIYGVEINE-----YAVEKAKAYLPNINIIQGSLFD-PFK 102 (204)
T ss_pred HHHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHhhCCCCcEEEeeccC-CCC
Confidence 3344444443222 3458999999999999988774 466666654 5666666654445566667666 888
Q ss_pred CCCeeEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEe
Q 006905 273 SRAFDMAHCSRCLIPWNQF-GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+++||+|+++.+++|+..+ ...+++++.|++ ++++++..
T Consensus 103 ~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 9999999999999887643 378999999998 56777764
No 49
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.07 E-value=1.3e-10 Score=120.24 Aligned_cols=127 Identities=13% Similarity=0.238 Sum_probs=93.6
Q ss_pred hhchhhhHHHHHHHHHHHHhhhh--cCCC--------------CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCc
Q 006905 441 EIFQQNSELWKKRLSYYKTMNNQ--LGQS--------------GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKI 504 (626)
Q Consensus 441 ~~f~~d~~~w~~~v~~y~~~~~~--~~~~--------------~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~ 504 (626)
..|.+.++|-..++..|..+++. +.++ ..-..|||+|||+|+++..|++.. ..+|+.+|.++
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~ 85 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE 85 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence 45777777777777777777652 2221 233569999999999999997641 23799999999
Q ss_pred ccHHHHHHhcc----cceeccccccCC--CCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 505 NTLGVIYERGL----VGTYTNWCEAMS--TYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 505 ~~l~~~~~rgl----i~~~~~~~e~~~--~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+++..+.++.. +.+.+ ..+. +|| .+||+|++..+|.|... .+...+|.|+.|+|||||+++++|.
T Consensus 86 ~~~~~a~~~~~~~~~i~~~~---~D~~~~~~~~~~FD~V~s~~~l~h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 86 KMVNIAKLRNSDKNKIEFEA---NDILKKDFPENTFDMIYSRDAILHLSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHHHcCcCCceEEEE---CCcccCCCCCCCeEEEEEhhhHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999988743 22222 2222 356 89999999887777542 2568899999999999999999875
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.06 E-value=5.7e-10 Score=111.07 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=76.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccc-ccCC--CCCCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAA-ERLP--YPSRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~-~~Lp--f~d~sFDlV~~~ 282 (626)
+..+|||+|||+|.++..|++. .++++|+++.++..+..+.. ..+. ++.+.+.|+ ..++ +++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE-EEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH-HcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 3568999999999999988764 58999998865554443332 3343 467777787 6676 778899999997
Q ss_pred cccccccc--------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 283 RCLIPWNQ--------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 283 ~~l~h~~~--------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++. +|.. ....+++++.++|||||+|++..+
T Consensus 119 ~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 119 FPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 754 4432 126789999999999999999854
No 51
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=7.5e-10 Score=114.71 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=85.5
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHH----HcCC
Q 006905 183 FPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFAL----ERGV 257 (626)
Q Consensus 183 Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~----erg~ 257 (626)
|+.......+.....++.+.+.+.+.+| .++||||||.|.++.+++++ ++.++++ ++|++|.+.++ ++|.
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~V~Gv---TlS~~Q~~~~~~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVTVVGV---TLSEEQLAYAEKRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCEEEEe---eCCHHHHHHHHHHHHHcCC
Confidence 3433333434444455667777766664 49999999999999999998 4555554 34455555544 4465
Q ss_pred C--eEEEEcccccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 258 P--ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 258 ~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. +.+... ..+...+.||-|++...++|+.... ..+|+.+.++|+|||.+++-.
T Consensus 121 ~~~v~v~l~---d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 121 EDNVEVRLQ---DYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred CcccEEEec---cccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 5 344433 3333345599999999999987644 889999999999999999964
No 52
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.05 E-value=2.4e-09 Score=103.57 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=80.0
Q ss_pred CCCCCc-HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEE
Q 006905 188 TMFPNG-ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALI 261 (626)
Q Consensus 188 t~F~~g-a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~ 261 (626)
.+|... .+.-...|.+.+... ...+|||+|||+|.++..++++ .++++|+++..+..+. +.+..+++. +.+
T Consensus 9 gvFs~~~~d~~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~ 85 (170)
T PF05175_consen 9 GVFSPPRLDAGTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEV 85 (170)
T ss_dssp TSTTTTSHHHHHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEE
T ss_pred CeeCCCCCCHHHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCcccccc
Confidence 355533 333334555555543 3458999999999999999886 4889999875554333 334445555 666
Q ss_pred EEcccccCCCCCCCeeEEEeccccccccc----cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 262 GVLAAERLPYPSRAFDMAHCSRCLIPWNQ----FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 262 ~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~----~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...|... +.++++||+|+|+..++.-.. ....++.+..+.|||||.|++...
T Consensus 86 ~~~d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 86 VQSDLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp EESSTTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 6555322 234689999999987633322 126789999999999999988743
No 53
>PRK06922 hypothetical protein; Provisional
Probab=99.04 E-value=6e-10 Score=126.38 Aligned_cols=101 Identities=18% Similarity=0.116 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--CCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--YPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--f~d~sFDlV~~~~~l 285 (626)
+.+|||+|||+|.++..+++. .++++|+++.++..+..+. ...+.+..+..+|...+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 458999999999988888763 7888888776555443322 233455666777877787 788999999999988
Q ss_pred cccc------------ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWN------------QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~------------~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+|. .+...+|+++.|+|||||.+++..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 7653 234789999999999999999975
No 54
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.04 E-value=7.9e-10 Score=113.14 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=76.6
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC-CccceeeeccccccC
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP-RTYDLIHADSVFSLY 545 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~ 545 (626)
....+|||+|||+|.++..|++.+. .|+.+|.++.++..+.++.. +.....-.+.+ +++ ++||+|.++.++...
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESL-PLATATFDLAWSNLAVQWC 116 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccC-cCCCCcEEEEEECchhhhc
Confidence 3467899999999999999988764 78999999999999998863 22222112332 244 799999998777644
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
. +...+|.|+.|+|||||.++++.
T Consensus 117 ~---d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 117 G---NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred C---CHHHHHHHHHHHcCCCeEEEEEe
Confidence 3 56899999999999999999984
No 55
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.03 E-value=2.5e-10 Score=116.17 Aligned_cols=114 Identities=19% Similarity=0.284 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceecc
Q 006905 448 ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYTN 521 (626)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~~ 521 (626)
+.|++.+.... . +.+ -..|||++||+|-++..|++.----..|+.+|.+++||.++.+|.- |..+..
T Consensus 33 ~~wr~~~~~~~---~-~~~---g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLL---G-LRP---GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHH---T---S-----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhcc---C-CCC---CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 67888665432 1 233 3489999999999999998752223379999999999999998743 333333
Q ss_pred ccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 522 WCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 522 ~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
-.|.++ || +|||.|-+...+.... +.+..|.||.|||||||.++|-|
T Consensus 106 da~~lp-~~d~sfD~v~~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 106 DAEDLP-FPDNSFDAVTCSFGLRNFP---DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHhc-CCCCceeEEEHHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEee
Confidence 344443 56 9999999977777665 56999999999999999999975
No 56
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.02 E-value=9.4e-11 Score=110.25 Aligned_cols=96 Identities=23% Similarity=0.389 Sum_probs=76.5
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC-CccceeeeccccccCC
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP-RTYDLIHADSVFSLYK 546 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~ 546 (626)
....+|||+|||.|.++..|++.+. +|+.+|.++.+++. +......++ ......| ++||+|+|..+|.+..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhcc
Confidence 3466899999999999999999887 89999999778777 222222211 1122234 9999999999999998
Q ss_pred CCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 547 DRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 547 ~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
+...+|.+|.|+|||||++++++..
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4789999999999999999999765
No 57
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.02 E-value=3.6e-09 Score=111.05 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=80.0
Q ss_pred CCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEE
Q 006905 187 GTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGV 263 (626)
Q Consensus 187 gt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v 263 (626)
+..|+.|.........+++......+.+|||+|||+|.++..+++. .++++|+++..+..++.+ +..+++......
T Consensus 135 g~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n-~~~n~~~~~~~~ 213 (288)
T TIGR00406 135 GLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKN-AELNQVSDRLQV 213 (288)
T ss_pred CCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCcceEE
Confidence 3446666555555444444422223569999999999998887765 588999988666544433 333444322211
Q ss_pred cccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 264 LAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 264 ~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
......+..+++||+|+++... .....++.++.++|||||+|++++.
T Consensus 214 ~~~~~~~~~~~~fDlVvan~~~----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 214 KLIYLEQPIEGKADVIVANILA----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EecccccccCCCceEEEEecCH----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1111233456789999997643 2235789999999999999999864
No 58
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.02 E-value=5.6e-10 Score=115.49 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=76.3
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc---------cceeccccccCCCCC-Cccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL---------VGTYTNWCEAMSTYP-RTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl---------i~~~~~~~e~~~~yp-~t~Dlih~ 538 (626)
-.+|||+|||+|.++..|+++ +. .-+|+.+|.+++|++.+.+|.- +.....-.+.+ ++| ++||+|.+
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~ 151 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITM 151 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEE
Confidence 457999999999999988765 21 1278999999999999987631 22333223333 355 89999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
..++.+.. +...+|.||.|+|||||.+++.|-
T Consensus 152 ~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 152 GYGLRNVV---DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ecccccCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 88888776 568999999999999999999863
No 59
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.02 E-value=2.7e-09 Score=107.30 Aligned_cols=102 Identities=16% Similarity=0.043 Sum_probs=74.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHH------------HcCCCeEEEEcccccCCCC-CCCe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFAL------------ERGVPALIGVLAAERLPYP-SRAF 276 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~------------erg~~~~~~v~d~~~Lpf~-d~sF 276 (626)
+.+|||+|||.|..+.+|+++ .|+++|+++..+..++.+... .++..+.+.++|...++.. .+.|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 458999999999999999998 677888877544432111100 0123466778887776642 4579
Q ss_pred eEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 277 DMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 277 DlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|.|+-..+++|++.+. ..++..+.++|||||++++.+
T Consensus 115 D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 115 DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 9999988888887655 679999999999999877754
No 60
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.01 E-value=9.1e-10 Score=113.17 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=81.5
Q ss_pred HhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeee
Q 006905 459 TMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHA 538 (626)
Q Consensus 459 ~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~ 538 (626)
.++..+.. ..-..|||+|||.|.++..|+++. -...|+.+|.++.|+..+.++++ .+.+.=.+.+. ...+||+|++
T Consensus 20 ~ll~~l~~-~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~ 95 (255)
T PRK14103 20 DLLARVGA-ERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVS 95 (255)
T ss_pred HHHHhCCC-CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEE
Confidence 34554544 445789999999999999998761 11378999999999999999874 33332122221 1279999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.+|.+.. +.+.+|.++.|+|||||++++..
T Consensus 96 ~~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 96 NAALQWVP---EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred ehhhhhCC---CHHHHHHHHHHhCCCCcEEEEEc
Confidence 99998876 45889999999999999999973
No 61
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.01 E-value=4.1e-09 Score=94.80 Aligned_cols=108 Identities=19% Similarity=0.049 Sum_probs=73.3
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc-CCCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER-LPYP 272 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~-Lpf~ 272 (626)
..+.+.+.... ..+|||+|||+|.++..++++ .++++|+++..+..+..... ..+. ...+...+... ++..
T Consensus 9 ~~~~~~~~~~~--~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (124)
T TIGR02469 9 ALTLSKLRLRP--GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNAR-RFGVSNIVIVEGDAPEALEDS 85 (124)
T ss_pred HHHHHHcCCCC--CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHH-HhCCCceEEEeccccccChhh
Confidence 33444443333 458999999999999999875 57888887755544433322 3333 35555555443 3344
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+||.|++.....+ ...+++++.++|+|||+|++..
T Consensus 86 ~~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 86 LPEPDRVFIGGSGGL----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cCCCCEEEECCcchh----HHHHHHHHHHHcCCCCEEEEEe
Confidence 468999999765422 3588999999999999999974
No 62
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.01 E-value=1.3e-09 Score=113.12 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCch----HHHHHhhC---------CcEEEeCCccchHHHHHHHH---HHcC------------------
Q 006905 211 SIRTAIDTGCGVAS----WGAYLLSR---------NIITMSFAPRDTHEAQVQFA---LERG------------------ 256 (626)
Q Consensus 211 ~~~~VLDIGCGtG~----~a~~La~~---------~V~avdis~~dls~a~i~~A---~erg------------------ 256 (626)
...+|||+|||+|. ++..|++. .|+++|+++.++..+....- .-++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999994 55555442 47777776654443332100 0001
Q ss_pred ------CCeEEEEcccccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 257 ------VPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 257 ------~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+.+.+.|....++++++||+|+|.++++|+.... ..++.++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 135677778777777788999999999998776432 689999999999999999963
No 63
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.99 E-value=2.6e-09 Score=112.16 Aligned_cols=122 Identities=21% Similarity=0.259 Sum_probs=84.7
Q ss_pred CCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEE
Q 006905 186 GGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIG 262 (626)
Q Consensus 186 ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~ 262 (626)
.|..|+.|...-.....+++.....++.+|||+|||+|.++...++. .|+++|+++..+. ...+.+..+++...+.
T Consensus 136 Pg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~-~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 136 PGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVE-AARENAELNGVEDRIE 214 (295)
T ss_dssp TTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHH-HHHHHHHHTT-TTCEE
T ss_pred CCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHH-HHHHHHHHcCCCeeEE
Confidence 45678999988887777777644444569999999999777766664 6899999996554 3444566677665444
Q ss_pred EcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 263 VLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 263 v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+... .......||+|++|... +-...++..+.++|+|||+|++|+-
T Consensus 215 v~~~--~~~~~~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 215 VSLS--EDLVEGKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp ESCT--SCTCCS-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEe--cccccccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEccc
Confidence 3322 22335889999998744 2236788889999999999999974
No 64
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.98 E-value=7.3e-10 Score=115.34 Aligned_cols=111 Identities=16% Similarity=0.237 Sum_probs=78.6
Q ss_pred HHHHHHhhhh--cCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHH----HHhcccceeccccccC
Q 006905 454 LSYYKTMNNQ--LGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVI----YERGLVGTYTNWCEAM 526 (626)
Q Consensus 454 v~~y~~~~~~--~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~----~~rgli~~~~~~~e~~ 526 (626)
...+..++.. |.+ -.+|||+|||.|+++.+++++ ++ +|+.+..|+++.+.+ .++||.+...--+..+
T Consensus 48 ~~k~~~~~~~~~l~~---G~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~ 121 (273)
T PF02353_consen 48 ERKLDLLCEKLGLKP---GDRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY 121 (273)
T ss_dssp HHHHHHHHTTTT--T---T-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G
T ss_pred HHHHHHHHHHhCCCC---CCEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec
Confidence 3334444443 555 458999999999999999998 87 788888998888865 4667644444345667
Q ss_pred CCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 527 STYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 527 ~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
..++.+||-|.+.++|.|...+ +.+.++.+++|+|||||.+++.
T Consensus 122 ~~~~~~fD~IvSi~~~Ehvg~~-~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 122 RDLPGKFDRIVSIEMFEHVGRK-NYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp GG---S-SEEEEESEGGGTCGG-GHHHHHHHHHHHSETTEEEEEE
T ss_pred cccCCCCCEEEEEechhhcChh-HHHHHHHHHHHhcCCCcEEEEE
Confidence 7778899999999999999753 7789999999999999999874
No 65
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.97 E-value=1.7e-09 Score=108.48 Aligned_cols=98 Identities=18% Similarity=0.279 Sum_probs=72.4
Q ss_pred EEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 214 TAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
+|||||||+|.++..+++. .++++|+++..+..+... ....+. .+.+...|....|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~-~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRER-IRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 6999999999999888874 467777766443332222 223333 346666676566665 48999999999977
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+ ...+|.++.++|||||++++...
T Consensus 80 ~~~-~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 IKD-KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CCC-HHHHHHHHHHHcCCCCEEEEEEc
Confidence 654 68999999999999999999864
No 66
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.97 E-value=3.5e-09 Score=115.41 Aligned_cols=105 Identities=23% Similarity=0.352 Sum_probs=75.2
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHc--CCCeEEEEcccccCCCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALER--GVPALIGVLAAERLPYPSR 274 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~er--g~~~~~~v~d~~~Lpf~d~ 274 (626)
.+.+.+.+.+ +.+|||||||+|.++..++++ .|+++|+++ .+++.++++ +..+.+...|...+ ++
T Consensus 158 ~l~~~l~l~~--g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~-----~~l~~A~~~~~~l~v~~~~~D~~~l---~~ 227 (383)
T PRK11705 158 LICRKLQLKP--GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA-----EQQKLAQERCAGLPVEIRLQDYRDL---NG 227 (383)
T ss_pred HHHHHhCCCC--CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhccCeEEEEECchhhc---CC
Confidence 3444444333 458999999999999999875 466666655 555555544 33455555555444 47
Q ss_pred CeeEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSRCLIPWNQ-FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+||+|++..+++|... +...++.++.|+|||||++++...
T Consensus 228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 8999999998877643 237899999999999999999753
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.96 E-value=2.6e-09 Score=105.58 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=74.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC---CCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP---YPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp---f~d~sFDlV~~~~ 283 (626)
..++||||||+|.++..++.+ .++++|+++..+..+..+ +...++ .+.+..+|+..++ +++++||.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~-~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNK-ANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHH-HHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 458999999999999998876 688999877655444333 333444 4667777766543 5567999999987
Q ss_pred ccccccccH--------HHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQFG--------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~~--------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. +|.... ..++.++.|+|||||.|++...
T Consensus 96 pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 54 564421 4689999999999999999753
No 68
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.96 E-value=1.3e-07 Score=102.58 Aligned_cols=130 Identities=16% Similarity=0.154 Sum_probs=88.1
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-----cceeccccccCCCCC-Cccceeeecc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-----VGTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-----i~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
..|||+|||+|-.+.+|+++. ....|+.+|.++.+++.+.+. +. +.+++ ...++..+ .+||+|.|+-
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIlsNP 306 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLCNP 306 (378)
T ss_pred CeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEECc
Confidence 479999999999999998762 113788999998888887653 11 22232 23344454 6999999988
Q ss_pred ccccCCC--CCCHHHHHHHhhhhccCCcEEEEEc--ChHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 541 VFSLYKD--RCETEDILLEMDRILRPEGGVIFRD--DVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 541 ~f~~~~~--~c~~~~~l~E~dRiLRPgG~~i~~d--~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
-|..... .-....++.+..|+|||||.++|-- ..+...++++++. ++.++... .+-+|+-++|
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~----~kf~vl~a~k 373 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATN----NKFVVLKAVK 373 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccC----CCEEEEEEEe
Confidence 8764321 1123568899999999999999963 2345666666544 33333222 4567887777
No 69
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.95 E-value=2.7e-09 Score=106.90 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=71.8
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC---
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--- 270 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--- 270 (626)
.++.+...+. .++.+|||||||+|.++..++++ .|+++|+++. . .-..+.+..+|....+
T Consensus 40 ~~~~~~~~~~-~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~----------~~~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 40 DEIQQSDKLF-KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-D----------PIVGVDFLQGDFRDELVLK 107 (209)
T ss_pred HHHHHHhccC-CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-c----------CCCCcEEEecCCCChHHHH
Confidence 3444444421 22458999999999999988775 4888888761 1 1123566777766642
Q ss_pred -----CCCCCeeEEEeccccccccccH-----------HHHHHHHHhcccCCeEEEEEe
Q 006905 271 -----YPSRAFDMAHCSRCLIPWNQFG-----------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 271 -----f~d~sFDlV~~~~~l~h~~~~~-----------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.+++||+|+|+.+. ++...+ ..+|.++.++|||||.|++..
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred HHHHHhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 567899999998766 333221 358999999999999999964
No 70
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.95 E-value=1.1e-09 Score=108.42 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=71.9
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcccceeccccccCCC--CCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGLVGTYTNWCEAMST--YPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgli~~~~~~~e~~~~--yp~t~Dlih~~~~f~~ 544 (626)
.+|||+|||.|.++.+|++++. +|+.+|.++.+++.+.+ +|+-. ++--+..+.. ++.+||+|.|..+|.+
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILSTVVLMF 107 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEecchhh
Confidence 5799999999999999999875 89999999888886554 34311 1111233333 3588999999988876
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
.. ..++..++.+|.|+|||||++++
T Consensus 108 ~~-~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 108 LE-AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence 54 23568899999999999999655
No 71
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.95 E-value=6e-10 Score=99.02 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=74.9
Q ss_pred eeEEeccCchhhHhhhhhC--CCeEEEEeccCccCcccHHHHHHhc----c---cceec-cccccCCCCCCccceeeecc
Q 006905 471 RNILDMNAHLGGFAAALID--FPVWVMNVVPAEAKINTLGVIYERG----L---VGTYT-NWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~--~~v~~mnv~~~~~~~~~l~~~~~rg----l---i~~~~-~~~e~~~~yp~t~Dlih~~~ 540 (626)
.+|||+|||.|.++.+|++ .+. +|+.+|.++.+++.+.++- . |..++ |+ +.....+..||+|.+.+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 4689999999999999999 666 7999999999999998886 2 34444 33 22244457799999998
Q ss_pred -ccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 541 -VFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 541 -~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.+.++-+..+...+|.++.+.|||||+++|++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 23323222345779999999999999999975
No 72
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=2.9e-09 Score=111.21 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=81.2
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEc
Q 006905 188 TMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVL 264 (626)
Q Consensus 188 t~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~ 264 (626)
-.|+.|...-...-.+.+.....++++|||+|||+|.++...++. .++++|++|..+.. ..+.++.++++......
T Consensus 139 lAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~a-a~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 139 LAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEA-ARENARLNGVELLVQAK 217 (300)
T ss_pred cccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHH-HHHHHHHcCCchhhhcc
Confidence 446666555544444444433335679999999999888887776 58899998865543 33455566765311111
Q ss_pred ccccCCCCC-CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 265 AAERLPYPS-RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 265 d~~~Lpf~d-~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
....+..+. +.||+|++|... +....+..++.+.|||||++++|+-
T Consensus 218 ~~~~~~~~~~~~~DvIVANILA----~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 218 GFLLLEVPENGPFDVIVANILA----EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred cccchhhcccCcccEEEehhhH----HHHHHHHHHHHHHcCCCceEEEEee
Confidence 122223334 589999998833 2236889999999999999999974
No 73
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.94 E-value=8.1e-09 Score=102.62 Aligned_cols=108 Identities=22% Similarity=0.279 Sum_probs=79.0
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEcccccCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERG---VPALIGVLAAERLP 270 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg---~~~~~~v~d~~~Lp 270 (626)
+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++. +++.+.++. ..+.+...+...++
T Consensus 29 ~~~~~~~~~~--~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~-----~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (223)
T TIGR01934 29 RRAVKLIGVF--KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE-----MLEVAKKKSELPLNIEFIQADAEALP 101 (223)
T ss_pred HHHHHHhccC--CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH-----HHHHHHHHhccCCCceEEecchhcCC
Confidence 3444444333 3568999999999999888775 4667777553 334443332 23566677887888
Q ss_pred CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++++||+|+++..+++.. +...+++++.++|+|||.+++...
T Consensus 102 ~~~~~~D~i~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCcEEEEEEeeeeCCcc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8888999999999885554 468999999999999999998753
No 74
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=8.3e-09 Score=107.37 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=88.1
Q ss_pred CCceecCCCCCCCCCcHHHHH-HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHH
Q 006905 178 GDRFRFPGGGTMFPNGADAYI-DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFA 252 (626)
Q Consensus 178 ge~~~Fp~ggt~F~~ga~~yi-~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A 252 (626)
+..+.|-....+|+.+.-++- +.|.+-++...+ .+|||+|||.|.++..|++. .++-+|++...+..++.+.+
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~--~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLG--GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCC--CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH
Confidence 455666555666666544442 344555543332 28999999999999999987 57777886655544443333
Q ss_pred HHcCCCeEEEEcccccCCCCCCCeeEEEeccccccccccHH----HHHHHHHhcccCCeEEEEEeC
Q 006905 253 LERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGG----IYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 253 ~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~----~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+++....+..+....+..+ +||+|+||.-+|.-..-.. +++.+..+.|++||.|+|+..
T Consensus 204 -~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 204 -ANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred -HcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 34454422223333444444 8999999998854433333 899999999999999999865
No 75
>PLN02244 tocopherol O-methyltransferase
Probab=98.94 E-value=1.2e-09 Score=117.34 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=74.0
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
..+|||+|||.|+++..|+++ +. +|+.+|.++.+++.+.++ |+ +.....=.+.+ ++| ++||+|++..
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~~ 194 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSME 194 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEECC
Confidence 467999999999999999886 44 789999998998876553 44 22222111122 345 8999999988
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
++.|..+ ...+|.||.|+|||||.++|.+
T Consensus 195 ~~~h~~d---~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMPD---KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 8888764 5889999999999999999964
No 76
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.93 E-value=8.6e-09 Score=101.04 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=70.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+.+|||+|||+|.++..++.. .|+++|.++.++..+. +.+.+.+. .+.+..++...++ .+++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 568999999999988887643 5889998876554332 33334455 3667777877764 357899999865 3
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+ +...++..+.++|+|||.+++...
T Consensus 119 ~---~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 A---SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred h---CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2 235688899999999999998743
No 77
>PRK06202 hypothetical protein; Provisional
Probab=98.92 E-value=7.4e-09 Score=104.88 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=68.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCCCCCCeeEEE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--------NIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPYPSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--------~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf~d~sFDlV~ 280 (626)
...+|||||||+|.++..|++. .++++|+++ .+++.|+++. ..+.+.+.+...+++++++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP-----RAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH-----HHHHHHHhccccCCCeEEEEecccccccCCCccEEE
Confidence 3568999999999988887641 577777766 4445554432 223444556666777788999999
Q ss_pred eccccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 281 CSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 281 ~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
|+.+++|+.++. ..+|+++.|+++ |.+++.
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 999998876542 579999999998 455554
No 78
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.92 E-value=1.4e-09 Score=111.95 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=76.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.|+..+.++ |+ +.+++.-.+.+..++ ++||+|.+..+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 35899999999999999999875 899999999999988775 33 223332222333344 89999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
|.+.. +...+|.++.|+|||||.+++..
T Consensus 122 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 122 LEWVA---DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHhhC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 98876 44789999999999999998863
No 79
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.91 E-value=9.9e-09 Score=100.78 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=71.6
Q ss_pred cCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEcccccCCCCCCCeeEEEe
Q 006905 207 LNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG---VPALIGVLAAERLPYPSRAFDMAHC 281 (626)
Q Consensus 207 l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg---~~~~~~v~d~~~Lpf~d~sFDlV~~ 281 (626)
+..+..+++||+|||.|.++..|+.+ .++++|+++ .+++.|++|- ..+.+.+.+.... .|.+.||+|++
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~-----~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~ 112 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISP-----RALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVL 112 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-H-----HHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEEeCCH-----HHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEE
Confidence 34555678999999999999999998 788888855 5556666552 2466776665443 46889999999
Q ss_pred ccccccccc--cHHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQ--FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~--~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.+++.+.+ +...++..+...|+|||.||+..
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999966643 23678999999999999999975
No 80
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.91 E-value=1.5e-08 Score=104.07 Aligned_cols=114 Identities=21% Similarity=0.221 Sum_probs=71.5
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccc
Q 006905 190 FPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAA 266 (626)
Q Consensus 190 F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~ 266 (626)
|+.+.........+.+......+.+|||+|||+|.++..+++. .++++|+++..+..+..+ +..+++...+.
T Consensus 98 fgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n-~~~~~~~~~~~---- 172 (250)
T PRK00517 98 FGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN-AELNGVELNVY---- 172 (250)
T ss_pred cCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCceEE----
Confidence 3444444333333333322234568999999999988887765 478888877655443333 33344421111
Q ss_pred ccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 267 ERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 267 ~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++..+.+||+|+++... .....++.++.++|||||++++++.
T Consensus 173 --~~~~~~~fD~Vvani~~----~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 173 --LPQGDLKADVIVANILA----NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred --EccCCCCcCEEEEcCcH----HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 22222379999997643 2235788999999999999999864
No 81
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.91 E-value=1.3e-08 Score=109.39 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=73.1
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
.+|||+|||+|.++..++++ .++++|+++..+..+..+. ..+++...+...|... ..++.||+|+|+..+|..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl-~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL-AANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 37999999999999998875 5888898876666554433 3455655555555332 235789999999988543
Q ss_pred cc----cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQ----FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~----~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. ....++.++.++|||||.|+|+..
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 22 226899999999999999999864
No 82
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.91 E-value=2.8e-08 Score=116.21 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=83.5
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c----cceec-cccccCCCCCCccceeeeccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L----VGTYT-NWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l----i~~~~-~~~e~~~~yp~t~Dlih~~~~ 541 (626)
++|||+|||+|+|+.+++..+.- .|+.+|.++.+++.+.+.- + +.+++ |..+-+..+.++||+|-++-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 67999999999999999988652 5899999999998776643 2 11222 222212223579999988521
Q ss_pred -cccCCC-------CCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEee
Q 006905 542 -FSLYKD-------RCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 542 -f~~~~~-------~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~ 595 (626)
|..... .-+...++...-|+|+|||.+++...........+.+..-.++.++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 221110 113456888889999999999987555444445667777788888664
No 83
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.90 E-value=2.4e-09 Score=113.99 Aligned_cols=96 Identities=11% Similarity=0.192 Sum_probs=77.0
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c---cceeccccccCCCCCCccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L---VGTYTNWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l---i~~~~~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
.+|||+|||.|.++..|+..+. +|+.+|.++.+++++.++. + |..++.-.+.+...+++||+|-|..++.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4799999999999999998765 8999999999999998763 1 2223322233332237999999999999
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
|.. +.+.+|.|+.|+|||||.++|++
T Consensus 210 Hv~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HVA---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 887 45899999999999999999985
No 84
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.90 E-value=8.9e-09 Score=103.31 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=78.6
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPY 271 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf 271 (626)
...+.+.+.+........+|||+|||+|.++..+++. .++++|+++.++..++.+.. ..+. .+.+.+.|...++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhhCC-
Confidence 3444455555421233568999999999999999886 57788887755544333322 2232 4667777776665
Q ss_pred CCCCeeEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEE
Q 006905 272 PSRAFDMAHCSRCLIPWNQ-FGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis 312 (626)
++||+|++..+++|+.. +...++.++.+++++++++.+.
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 78999999998878754 3378899999999987776654
No 85
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.90 E-value=1.5e-08 Score=107.59 Aligned_cols=116 Identities=19% Similarity=0.169 Sum_probs=73.0
Q ss_pred HHHHHHHHhhccC-CCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHH-----cCCCeEEEEcccc
Q 006905 196 AYIDDIGKLINLN-DGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALE-----RGVPALIGVLAAE 267 (626)
Q Consensus 196 ~yi~~L~~ll~l~-~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~e-----rg~~~~~~v~d~~ 267 (626)
..++.+.+++... ...+.+|||||||+|.++..|+++ .|+++|+++.++..++.+.... ......+...|..
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3445555555432 223568999999999999999987 5788888776665444332221 0123455555544
Q ss_pred cCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCC
Q 006905 268 RLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 268 ~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
.+ +++||+|+|..+++|+.++. ..++..+.+ +.+||. +|+..|.
T Consensus 208 ~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~ 252 (315)
T PLN02585 208 SL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPK 252 (315)
T ss_pred hc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCc
Confidence 33 57899999999998887644 345555654 456555 4554433
No 86
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.90 E-value=1.4e-08 Score=101.35 Aligned_cols=107 Identities=15% Similarity=0.059 Sum_probs=73.3
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERL 269 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~L 269 (626)
....+.+.+...+ +.+|||+|||+|..+..|++. .++++|+++.....+. +.....+.. +.+..+|....
T Consensus 60 ~~~~~~~~l~~~~--~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~-~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 60 MVAMMCELIEPRP--GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA-QNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHhcCCCC--CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCcEEEEECCcccC
Confidence 3445555554433 458999999999999888763 5888888775444333 233344543 56666776554
Q ss_pred CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.....+||+|++..++.+. ..++.++|+|||.|++..
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEE
Confidence 4445789999998876443 247889999999999864
No 87
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.90 E-value=8.2e-09 Score=104.13 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=71.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC----------------CeEEEEcccccCCCC-
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV----------------PALIGVLAAERLPYP- 272 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~----------------~~~~~v~d~~~Lpf~- 272 (626)
..+|||+|||.|..+..|+++ .|+++|+++..+..+ +.++++ .+.+.++|...++..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~----~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQF----FAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHH----HHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 458999999999999999998 577777766444322 223332 355667777766533
Q ss_pred CCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEE
Q 006905 273 SRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvi 311 (626)
...||+|+-..+++|++... ..++..+.++|+|||.+++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 35899999988888886554 7899999999999997555
No 88
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.89 E-value=3.6e-09 Score=110.89 Aligned_cols=115 Identities=16% Similarity=0.170 Sum_probs=84.0
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCC--CCCccceeeeccccccC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMST--YPRTYDLIHADSVFSLY 545 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~--yp~t~Dlih~~~~f~~~ 545 (626)
+|||+|||.|.++.+|++++. .|+.+|.++.+++.+.++ |+ . ++--+..+.. .+.+||+|.+..+|.+.
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhhC
Confidence 799999999999999999875 899999998888876443 44 1 1111222322 25899999999998876
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEc---Ch-----------HHHHHHHHHHHhCCCeeEEe
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRD---DV-----------DELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d---~~-----------~~~~~~~~~~~~l~w~~~~~ 594 (626)
.. .+++.++.+|.|+|+|||++++-. .. -.-..++++++. |++..+
T Consensus 198 ~~-~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 NR-ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CH-HHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 43 467889999999999999966531 11 124567777766 887754
No 89
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.89 E-value=1.1e-08 Score=110.69 Aligned_cols=100 Identities=23% Similarity=0.256 Sum_probs=77.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccC--CCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERL--PYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~L--pf~d~sFDlV~~~~~ 284 (626)
...+||||||+|.++..++.+ .++++|+++.++..+..+ +...++ ++.+..+|+..+ .+++++||.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~k-a~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQ-IELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 458999999999999999975 789999988666555444 445555 455667776554 478899999999876
Q ss_pred cccccccH------HHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWNQFG------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~~~~------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. +|+... ..++.++.|+|+|||.+.+.+
T Consensus 202 d-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 V-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred C-CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4 776433 479999999999999999974
No 90
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.88 E-value=1e-08 Score=106.69 Aligned_cols=101 Identities=23% Similarity=0.260 Sum_probs=74.4
Q ss_pred CCCCEEEEeCCCCchHHHHHhhCCc-EEEeCCccchHHHHHHHHHHc-CCCe--EEEEcccccCCCCCCCeeEEEecccc
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSRNI-ITMSFAPRDTHEAQVQFALER-GVPA--LIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~~V-~avdis~~dls~a~i~~A~er-g~~~--~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
-.+++|||||||+|.++.+|+.++. .++.++|....-.|-+++++- |... ...-...+.+|. .++||+|+|..+|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 3477999999999999999999843 244444444444444444332 2222 222245888887 7899999999999
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.|..+ +-..|.++...|+|||.+++.
T Consensus 193 YHrr~-Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 193 YHRRS-PLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hccCC-HHHHHHHHHHhhCCCCEEEEE
Confidence 88765 689999999999999999985
No 91
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.88 E-value=5.6e-09 Score=105.96 Aligned_cols=96 Identities=22% Similarity=0.270 Sum_probs=69.4
Q ss_pred CCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCC--C---------eEEEEcccccCCCCCCCeeEEE
Q 006905 212 IRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGV--P---------ALIGVLAAERLPYPSRAFDMAH 280 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~--~---------~~~~v~d~~~Lpf~d~sFDlV~ 280 (626)
+++|||+|||+|.++..|++.+..++.+ |+++.+++.|++..- | +.+...+.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GI---D~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGI---DASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEee---cccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 5789999999999999999985444444 445566666654421 1 11122222222 24599999
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 281 CSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 281 ~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+.+++|..+ +..++..+.+.|||||.++|+.-
T Consensus 164 csevleHV~d-p~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 164 CSEVLEHVKD-PQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred eHHHHHHHhC-HHHHHHHHHHHhCCCCceEeeeh
Confidence 9999988865 68999999999999999999864
No 92
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.88 E-value=1.8e-08 Score=98.06 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=72.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
..+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..+....+...|....+ .++||+|+++..+++..
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 347999999999999999887 47888887755544433332 34555566666654433 45899999998775543
Q ss_pred cc--------------------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 290 QF--------------------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 290 ~~--------------------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. ...++.++.|+|||||.+++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 21 24679999999999999999754
No 93
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.88 E-value=1.5e-08 Score=109.80 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=73.9
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEcccccCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV----PALIGVLAAERLPY 271 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~----~~~~~v~d~~~Lpf 271 (626)
.+.+.++... ..+|||+|||+|.++..++++ .++++|+++..+..++.+.. .++. .+.+...|... .+
T Consensus 219 llL~~lp~~~--~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~-~n~~~~~~~v~~~~~D~l~-~~ 294 (378)
T PRK15001 219 FFMQHLPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TNMPEALDRCEFMINNALS-GV 294 (378)
T ss_pred HHHHhCCccc--CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCcccCceEEEEEccccc-cC
Confidence 3444444322 348999999999999999875 68899988765555444433 2222 23444444322 13
Q ss_pred CCCCeeEEEecccccccc--c-c-HHHHHHHHHhcccCCeEEEEEe
Q 006905 272 PSRAFDMAHCSRCLIPWN--Q-F-GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~--~-~-~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+..+||+|+|+..+|.-. . . ...++.++.++|+|||.|+++.
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 456899999998774321 1 1 2578999999999999999985
No 94
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.87 E-value=2.2e-08 Score=100.55 Aligned_cols=102 Identities=21% Similarity=0.217 Sum_probs=75.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHH-cCCCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALE-RGVPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~e-rg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
..+|||+|||+|.++..++.. .++++|+++..+..+..+.... ....+.+...+...+++++++||+|+++.++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 458999999999998888764 5778888664444333222211 0124567777877788778899999999988
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++. +...+|.++.++|+|||.+++...
T Consensus 132 ~~~~-~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 132 RNVP-DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccCC-CHHHHHHHHHHhccCCcEEEEEEe
Confidence 6554 468899999999999999998753
No 95
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.87 E-value=1.9e-08 Score=101.67 Aligned_cols=102 Identities=20% Similarity=0.321 Sum_probs=73.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC-CCCCCeeEEEecccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP-YPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp-f~d~sFDlV~~~~~l~h 287 (626)
...+|||||||+|.++..+++. .++++|+++..+..+... ....+....+...+...++ ..++.||+|+++.+++|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLH-ALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHH-HHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 3568999999999999888876 467777765433322222 2223444556556655554 34578999999998866
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+ ...+|.++.++|+|||.++++.+
T Consensus 127 ~~~-~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 127 VPD-PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cCC-HHHHHHHHHHHcCCCcEEEEEec
Confidence 654 68899999999999999999865
No 96
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.87 E-value=6.2e-09 Score=104.41 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=67.6
Q ss_pred CEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEE-----EcccccCCCC--CCCeeEEEecc
Q 006905 213 RTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIG-----VLAAERLPYP--SRAFDMAHCSR 283 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~-----v~d~~~Lpf~--d~sFDlV~~~~ 283 (626)
+.++|+|||+|..+..+++. .|+++|+ +++|+++|.+.. ++... ..+.+..++. ++|.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~-----s~~mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDV-----SEAMLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecC-----CHHHHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhh
Confidence 48999999999766667775 8998887 446777776543 22221 1122233443 89999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCe-EEEEE
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGG-YWILS 312 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG-~lvis 312 (626)
|+ ||.+ .+.+++++.|+||+.| .+.+-
T Consensus 109 a~-HWFd-le~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 109 AV-HWFD-LERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hH-Hhhc-hHHHHHHHHHHcCCCCCEEEEE
Confidence 99 9997 4999999999999977 55554
No 97
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.86 E-value=5.3e-09 Score=113.99 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=76.9
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcccc-eeccccccCCCCCCccceeeeccccccCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGLVG-TYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgli~-~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
-.+|||+|||.|+++..+++. ++ .|+.+|.++++++.+.++.- + .++-.+..+...+.+||+|.+..+|.+...
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~-~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCA-GLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhc-cCeEEEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 457999999999999999875 55 78999999999999988752 1 011112333344689999999999988754
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+ +.+.++.++.|+|||||++++.+
T Consensus 244 ~-~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 244 K-NYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred H-HHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 56789999999999999999964
No 98
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.85 E-value=4.2e-09 Score=104.22 Aligned_cols=95 Identities=18% Similarity=0.236 Sum_probs=71.5
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCC--CCCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMS--TYPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~--~yp~t~Dlih~~~~f~~ 544 (626)
.+|||+|||+|.++.+|++++. .|+.+|.++.++..+.++ |+ .+... +..+. .++.+||+|.+..+|.+
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~-~~d~~~~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENL-PLRTD-AYDINAAALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCC-CceeE-eccchhccccCCCCEEEEeccccc
Confidence 4799999999999999999864 799999999999876543 43 11111 11122 23578999999999876
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
... -+++.++.++.|+|+|||++++-
T Consensus 107 ~~~-~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 107 LQA-GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence 643 36688999999999999995553
No 99
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.85 E-value=6.5e-08 Score=94.77 Aligned_cols=105 Identities=15% Similarity=0.014 Sum_probs=70.9
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSR 274 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~ 274 (626)
.+...+... ...+|||+|||+|.++..++++ .++++|+++..+..++.+. ...+. .+.+...+.. .++ .+
T Consensus 22 ~~~~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~-~~~~~~~i~~~~~d~~-~~~-~~ 96 (187)
T PRK08287 22 LALSKLELH--RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR-QRFGCGNIDIIPGEAP-IEL-PG 96 (187)
T ss_pred HHHHhcCCC--CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCeEEEecCch-hhc-Cc
Confidence 334444433 3458999999999999888764 6889999875554443332 23333 3445544442 233 35
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+||+|++..... ....++.++.++|+|||++++..
T Consensus 97 ~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 97 KADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 799999977542 23568899999999999999864
No 100
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.85 E-value=3.2e-08 Score=99.74 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=73.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c--cceeccccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L--VGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l--i~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-.+|||+|||.|.++..|++.---..+|+.+|.++++++.+.++. + +.+++.=.+.+ ++| ++||+|++..++
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGFGL 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEeccc
Confidence 357999999999999999865101137899999989998777652 2 22333212222 245 899999998887
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
.+.. +...+|.|+.|+|||||++++.+.
T Consensus 125 ~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 7665 457899999999999999998764
No 101
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.84 E-value=8e-09 Score=109.55 Aligned_cols=116 Identities=13% Similarity=0.146 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHH--HHh--cccceeccccc
Q 006905 449 LWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVI--YER--GLVGTYTNWCE 524 (626)
Q Consensus 449 ~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~--~~r--gli~~~~~~~e 524 (626)
.|...+. |..++..++. -.-++|||+|||.|.++..|+..+.- .|+++|.++.|+..+ ..+ +..+..+-...
T Consensus 103 e~~s~~~-~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~ 178 (314)
T TIGR00452 103 EWRSDIK-WDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL 178 (314)
T ss_pred HHHHHHH-HHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC
Confidence 3444443 3334443443 33478999999999999999887652 589999987777542 111 11111111112
Q ss_pred cCCCCC--CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 525 AMSTYP--RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 525 ~~~~yp--~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.+..+| .+||+|.|.+++.|.. +...+|.|+.|+|||||.+|+.
T Consensus 179 ~ie~lp~~~~FD~V~s~gvL~H~~---dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 179 GIEQLHELYAFDTVFSMGVLYHRK---SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CHHHCCCCCCcCEEEEcchhhccC---CHHHHHHHHHHhcCCCCEEEEE
Confidence 233333 6899999999998765 6689999999999999999986
No 102
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.83 E-value=2.3e-08 Score=100.38 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER 268 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~ 268 (626)
......+.+.+...+ +.+|||||||+|.++..|++. .++++|+++.....+.. .....+. ++.+..+|...
T Consensus 62 p~~~~~~~~~l~~~~--g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~-~l~~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 62 IHMVAIMCELLDLKE--GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK-TLKKLGYDNVEVIVGDGTL 138 (212)
T ss_pred HHHHHHHHHHcCCCC--cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEECCccc
Confidence 334445556665444 459999999999999887764 57888887754443332 2333344 46677777665
Q ss_pred CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 269 LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
...+.+.||+|++..+..+ +...+.+.|||||.|++..
T Consensus 139 ~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEE
Confidence 5556788999999776532 2246777899999999964
No 103
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.83 E-value=2.1e-08 Score=102.96 Aligned_cols=125 Identities=13% Similarity=0.209 Sum_probs=87.0
Q ss_pred hhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCC--CCcccee
Q 006905 460 MNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTY--PRTYDLI 536 (626)
Q Consensus 460 ~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~y--p~t~Dli 536 (626)
++..+.. ....+|||+|||.|.++..|++.. -..+|+.+|.++.+++.+.++-- +.+.. ..+.++ +.+||+|
T Consensus 23 ll~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~---~d~~~~~~~~~fD~v 97 (258)
T PRK01683 23 LLARVPL-ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVE---ADIASWQPPQALDLI 97 (258)
T ss_pred HHhhCCC-cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEE---CchhccCCCCCccEE
Confidence 3333443 446789999999999999998751 12378999999999999887732 22322 222222 3799999
Q ss_pred eeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh----HHHHHHHHHHHhCCCeeE
Q 006905 537 HADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV----DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 537 h~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----~~~~~~~~~~~~l~w~~~ 592 (626)
+++.+|.+.. +...+|.++.|+|||||.+++.-.. .....++++.....|...
T Consensus 98 ~~~~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 154 (258)
T PRK01683 98 FANASLQWLP---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQN 154 (258)
T ss_pred EEccChhhCC---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHH
Confidence 9999988765 4588999999999999999996321 122334555555566544
No 104
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.82 E-value=8.5e-08 Score=97.50 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEccccc
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAER 268 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~ 268 (626)
...+++.+.+.+. ....+|||+|||+|.++..+++. .++++|+++..+..+.. .+...+.. +.+..+|...
T Consensus 73 ~~~l~~~~l~~~~---~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 73 TEELVEAALERLK---KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK-NAARLGLDNVTFLQSDWFE 148 (251)
T ss_pred hHHHHHHHHHhcc---cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhc
Confidence 3445555544443 22458999999999999999875 67888887755543332 23344554 5666666544
Q ss_pred CCCCCCCeeEEEecccccccc------cc-------------------HHHHHHHHHhcccCCeEEEEEe
Q 006905 269 LPYPSRAFDMAHCSRCLIPWN------QF-------------------GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~------~~-------------------~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++++++||+|+|+..++... .. ...++.++.++|+|||.+++..
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 45678999999976543211 00 1257889999999999999974
No 105
>PRK05785 hypothetical protein; Provisional
Probab=98.82 E-value=1.3e-08 Score=103.28 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCC
Q 006905 448 ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMS 527 (626)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~ 527 (626)
..|++.+..... ..+.. -.+|||+|||+|.++..|++.. ..+|+.+|.+++||+.+.+++ ..++...+.+
T Consensus 35 ~~wr~~~~~~l~--~~~~~---~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~l- 104 (226)
T PRK05785 35 VRWRAELVKTIL--KYCGR---PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEAL- 104 (226)
T ss_pred HHHHHHHHHHHH--HhcCC---CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhC-
Confidence 567765543221 11222 3579999999999999998872 128999999999999999875 3344444554
Q ss_pred CCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCc
Q 006905 528 TYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEG 566 (626)
Q Consensus 528 ~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG 566 (626)
++| ++||+|.+...+.+.. +++.+|.||.|||||.+
T Consensus 105 p~~d~sfD~v~~~~~l~~~~---d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASD---NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCEEEEEecChhhccC---CHHHHHHHHHHHhcCce
Confidence 355 9999999988776544 67999999999999954
No 106
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.81 E-value=1e-08 Score=109.35 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=70.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHH--HHhcc-----cceeccccccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVI--YERGL-----VGTYTNWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~--~~rgl-----i~~~~~~~e~~~~yp~t~Dlih~~~~f 542 (626)
-+.|||+|||.|.++..|++.+.- .|+.+|.++.++... ..+.. +.+...=.+.++. +.+||+|+|.+++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 368999999999999999987532 488999887766432 22211 2222211123332 5899999999998
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.|.. +...+|.++.|+|||||.+|+.
T Consensus 200 ~H~~---dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 200 YHRR---SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hccC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 7754 6689999999999999999986
No 107
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.81 E-value=3.5e-08 Score=98.81 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCC-CCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYP-SRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~-d~sFDlV~~~~~l~h 287 (626)
..+|||+|||+|.++..+++. .++++|+++..+..+..+.. ..+. .+.+...+...++.. .++||+|+++.++++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 568999999999999888775 57777776654443332222 2344 466666676666544 378999999998855
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. ++..+|.++.++|+|||.++++..
T Consensus 125 ~~-~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 125 VP-DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred CC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 54 568999999999999999998764
No 108
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.81 E-value=3.6e-08 Score=98.92 Aligned_cols=107 Identities=14% Similarity=0.148 Sum_probs=73.2
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--C---cEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--N---IITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP 270 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~---V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp 270 (626)
....+.+.+.... +.+|||||||+|.++..|++. . |+++|+++..+..+. +.+.+.+. .+.+...|.....
T Consensus 65 ~~~~~~~~l~~~~--~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKP--GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCC--cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCcccCC
Confidence 3345555555444 459999999999999988875 2 889998875444333 33334454 3566666765544
Q ss_pred CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.....||+|++..+..+ +...+.+.|+|||+|++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 34568999998765422 3356789999999999864
No 109
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.80 E-value=3.7e-08 Score=98.91 Aligned_cols=109 Identities=23% Similarity=0.287 Sum_probs=71.9
Q ss_pred HHHHHHHhhcc-CCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCC
Q 006905 197 YIDDIGKLINL-NDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPY 271 (626)
Q Consensus 197 yi~~L~~ll~l-~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf 271 (626)
..+.+...+.. ...+..+|||||||+|.++..|++. .++++|+++.++..+..... ..+. .+.+...| ++.
T Consensus 48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~-~~~~~~~i~~~~~d---~~~ 123 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAP-EAGLAGNITFEVGD---LES 123 (230)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCccCcEEEEcC---chh
Confidence 33444555543 1223568999999999999999876 57788887755554443332 2233 34555555 445
Q ss_pred CCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEE
Q 006905 272 PSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYW 309 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~l 309 (626)
.+++||+|++..+++|+.... ..+++++.+++++++.+
T Consensus 124 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 124 LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 568899999999998876533 67888888877554443
No 110
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.80 E-value=5.5e-09 Score=104.82 Aligned_cols=116 Identities=19% Similarity=0.271 Sum_probs=84.2
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCCCccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp~t~Dlih~~~~f 542 (626)
+.|||+|||.|+++..+++.. --.+|+.+|.+++++..+.++ |+ +.+.. |..+. ++|.+||+|++..+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHHH
Confidence 369999999999999998752 012788889998898877764 34 23332 21111 346899999999999
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcChH----------------HHHHHHHHHHhCCCeeE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDDVD----------------ELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~----------------~~~~~~~~~~~l~w~~~ 592 (626)
.+..+ .+.+|.++.|+|||||++++.+... ....+.+++..-.++..
T Consensus 78 ~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 78 HHIKD---KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred HhCCC---HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 88764 6899999999999999999986421 13456666766666654
No 111
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.80 E-value=2.6e-09 Score=106.13 Aligned_cols=107 Identities=24% Similarity=0.356 Sum_probs=81.9
Q ss_pred HHHhhc-cCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc-CC-CCCCC
Q 006905 201 IGKLIN-LNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER-LP-YPSRA 275 (626)
Q Consensus 201 L~~ll~-l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~-Lp-f~d~s 275 (626)
+.+++. ...+.-+++||+|||||-.+..|..+ .++++ |+|++|++.|.++++--...+.+... ++ ..+..
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv-----DiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGV-----DISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQER 188 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCC-----chhHHHHHHHHhccchHHHHHHHHHHHhhhccCCc
Confidence 444443 23344789999999999999999886 55555 55778999999998755555555432 22 44678
Q ss_pred eeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 276 FDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 276 FDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
||+|++..++ .+....+.++.-+.+.|+|||.|.+|.
T Consensus 189 ~DLi~AaDVl-~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 189 FDLIVAADVL-PYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred ccchhhhhHH-HhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 9999999998 666667999999999999999999985
No 112
>PRK14967 putative methyltransferase; Provisional
Probab=98.79 E-value=1.1e-07 Score=96.07 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=69.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
+.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+..+.+...|... .+++++||+|+++....+-
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 458999999999999888875 57888887755443332 333445555666666543 3456789999998643221
Q ss_pred ccc--------------------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQF--------------------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~~--------------------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
... ...++.++.++|||||.+++...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 110 24578889999999999998643
No 113
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.79 E-value=4.5e-09 Score=104.48 Aligned_cols=144 Identities=21% Similarity=0.246 Sum_probs=107.5
Q ss_pred hhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec-cccccCC--CCCCccceeee
Q 006905 462 NQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT-NWCEAMS--TYPRTYDLIHA 538 (626)
Q Consensus 462 ~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~~e~~~--~yp~t~Dlih~ 538 (626)
..... +..|.+||+|||+|-+|-+|.+.-- .+..+|.|+|||..+.|+|+...+. .=...|. .=++-||||.+
T Consensus 119 ~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 119 GKADL-GPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred HhccC-CccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhh
Confidence 33455 6699999999999999999876632 5789999999999999999965332 1122344 23599999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh----------------HHHHHHHHHHHhCCCeeEEe-----ecC
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV----------------DELVKVKRIIDALKWQSQIV-----DHE 597 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----------------~~~~~~~~~~~~l~w~~~~~-----~~e 597 (626)
..||.++. +++.++.=..+.|.|||.|+||... .....|...+.+--.++.-+ -.+
T Consensus 195 aDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 195 ADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred hhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 99999998 5699999999999999999998211 12456777777777776522 123
Q ss_pred CCCCCcceEEEEEec
Q 006905 598 DGPLEREKLLFAVKL 612 (626)
Q Consensus 598 ~~~~~~e~~l~~~K~ 612 (626)
.|.-.+..+.|++|+
T Consensus 272 ~g~pv~G~L~iark~ 286 (287)
T COG4976 272 AGEPVPGILVIARKK 286 (287)
T ss_pred cCCCCCCceEEEecC
Confidence 343366777788775
No 114
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.78 E-value=2.2e-08 Score=99.09 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=82.2
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcc-cccCCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLA-AERLPYPS 273 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d-~~~Lpf~d 273 (626)
..++-.+++.+......-|||||||+|.-+..|.+. .++++|+++.|++.++ ++-+...+..+| .+-+||..
T Consensus 36 m~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~-----~~e~egdlil~DMG~Glpfrp 110 (270)
T KOG1541|consen 36 MAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAV-----ERELEGDLILCDMGEGLPFRP 110 (270)
T ss_pred HHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHH-----HhhhhcCeeeeecCCCCCCCC
Confidence 334555666666556778999999999999998886 5677888776665444 333332344445 47899999
Q ss_pred CCeeEEEeccccccccc-------cH----HHHHHHHHhcccCCeEEEEEeCCCC
Q 006905 274 RAFDMAHCSRCLIPWNQ-------FG----GIYLIEVDRVLRPGGYWILSGPPIN 317 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~-------~~----~~~L~Ei~RvLKPGG~lvis~pp~~ 317 (626)
++||.|++.-++ .|.- .+ ..++..++.+|++|+..++...|.+
T Consensus 111 GtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 111 GTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 999999986665 5531 11 3578889999999999999866553
No 115
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.77 E-value=7e-09 Score=105.53 Aligned_cols=101 Identities=9% Similarity=0.152 Sum_probs=76.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCe-EEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPV-WVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v-~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
-.+|||+|||.|.++..|+++-. --.+|+.+|.+++|+..+.++ +. +.++ +..+..+| ..+|+|.+..
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~---~~d~~~~~~~~~d~v~~~~ 130 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEIL---CNDIRHVEIKNASMVILNF 130 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEE---ECChhhCCCCCCCEEeeec
Confidence 45799999999999998876410 013799999999999998776 21 2223 24555555 6799999988
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
++++.... +...+|.++.|+|+|||.++++|..
T Consensus 131 ~l~~~~~~-~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 131 TLQFLPPE-DRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred chhhCCHH-HHHHHHHHHHHhcCCCeEEEEeecc
Confidence 88876532 4578999999999999999999753
No 116
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.77 E-value=3.1e-08 Score=97.14 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcc--cceecc
Q 006905 448 ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGL--VGTYTN 521 (626)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgl--i~~~~~ 521 (626)
..|++++-.-..++..+. -.+|||+|||+|.++..|+...- ...|+.+|.++++++++.+ .|+ +.+++.
T Consensus 25 ~~~~~~~~d~i~~~~~~~----~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD----GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHhcC----CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec
Confidence 466766643332333332 35799999999998888764321 1368999999888876543 354 334432
Q ss_pred ccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCC-CeeEEe
Q 006905 522 WCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALK-WQSQIV 594 (626)
Q Consensus 522 ~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~-w~~~~~ 594 (626)
-.+.+ ....+||+|.|.. + .+++.++.++.|+|||||.+++........++..+.++++ |.....
T Consensus 100 d~~~~-~~~~~fD~I~s~~-~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 100 RAEDF-QHEEQFDVITSRA-L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred chhhc-cccCCccEEEehh-h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 12222 1238999999855 2 3568899999999999999999988777777777766633 444433
No 117
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.77 E-value=7.4e-09 Score=106.15 Aligned_cols=100 Identities=8% Similarity=0.148 Sum_probs=75.9
Q ss_pred eeEEeccCchhhHhhhhhC---CCeEEEEeccCccCcccHHHHHHhc----ccceeccccccCCCCC-Cccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALID---FPVWVMNVVPAEAKINTLGVIYERG----LVGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~---~~v~~mnv~~~~~~~~~l~~~~~rg----li~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
.+|||+|||+|..+.+|++ .+- ..|+.+|.++.|++.+.++- +...+.-.+..+..+| ..||+|.+..++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 4699999999999988875 222 27999999999999998763 2111111234555555 679999998888
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
.+... .+...++.||.|+|||||.++++|.
T Consensus 136 ~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 136 QFLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 87754 3457899999999999999999874
No 118
>PLN03075 nicotianamine synthase; Provisional
Probab=98.76 E-value=4.4e-08 Score=102.63 Aligned_cols=102 Identities=10% Similarity=0.169 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCchHHHHHhh--C----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLS--R----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~--~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~ 282 (626)
..++|||||||.|.+++.++. . .++++|+++..+..+........++ .+.|..+|+..++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 457899999998855444332 2 4888888775555444333222343 3778888866654335789999999
Q ss_pred ccccccc-ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 283 RCLIPWN-QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 283 ~~l~h~~-~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++++|. .+...+|..+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888885 556899999999999999999975
No 119
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.76 E-value=6.6e-08 Score=102.10 Aligned_cols=99 Identities=21% Similarity=0.261 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
..++||||||+|.++..++++ .++++|. +..+. ...+.+.+.+.. +.+..+|....+++. +|+|++++++
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~-~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~l 225 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAID-LVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRIL 225 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHH-HHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhh
Confidence 459999999999999999886 3666665 32222 222333444543 566777766556653 6999999999
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+|.++. ..+|+++.++|||||.+++...
T Consensus 226 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 226 YSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 8887643 6799999999999999999853
No 120
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.75 E-value=5.2e-08 Score=94.79 Aligned_cols=132 Identities=18% Similarity=0.209 Sum_probs=94.0
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceec-cccccCCCCCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYT-NWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~-~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
.+|||+|||+|.++..+++.+. .|+.+|.++.+++.+.++ ++ +.+++ |+.+ ..+.+||+|.++..|.+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCC
Confidence 4599999999999999998864 789999998998877664 22 22232 3222 23479999999877653
Q ss_pred CCC------------------CCCHHHHHHHhhhhccCCcEEEEEcChHH-HHHHHHHHHhCCCeeEEeecCCCCCCcce
Q 006905 545 YKD------------------RCETEDILLEMDRILRPEGGVIFRDDVDE-LVKVKRIIDALKWQSQIVDHEDGPLEREK 605 (626)
Q Consensus 545 ~~~------------------~c~~~~~l~E~dRiLRPgG~~i~~d~~~~-~~~~~~~~~~l~w~~~~~~~e~~~~~~e~ 605 (626)
... +..++.+|.++.|+|+|||.+++.+.... ...+.+.++...+..++.... |- +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~-~~--~~~ 171 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAER-GL--FFE 171 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEe-ec--Cce
Confidence 321 11256789999999999999999876554 778888888888988875433 22 233
Q ss_pred EEEEEe
Q 006905 606 LLFAVK 611 (626)
Q Consensus 606 ~l~~~K 611 (626)
-|++.|
T Consensus 172 ~~~~~~ 177 (179)
T TIGR00537 172 ELFAIK 177 (179)
T ss_pred EEEEEE
Confidence 455544
No 121
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.74 E-value=2e-08 Score=104.38 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=71.1
Q ss_pred CceeEEeccCchhhHhhhhhCCC--eEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC-Cccceeeecccccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFP--VWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP-RTYDLIHADSVFSL 544 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~--v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~ 544 (626)
.-.+|||+|||.|.+++.|++.. .-..+|+++|.+++++..+.++.- +.....-.+.+ +++ .+||+|.+. |.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l-p~~~~sfD~I~~~--~~- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL-PFADQSLDAIIRI--YA- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccC-CCcCCceeEEEEe--cC-
Confidence 34679999999999999987641 101368999999999999988742 22222111222 344 899999873 22
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHH
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRI 583 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~ 583 (626)
+..+.|+.|+|||||++|+.... ..+..++.+
T Consensus 161 -------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 -------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred -------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 23468999999999999997654 234444443
No 122
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.73 E-value=7.5e-08 Score=94.67 Aligned_cols=148 Identities=21% Similarity=0.312 Sum_probs=99.6
Q ss_pred HHHhhh-hcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec-cc-cccCCC-CC-C
Q 006905 457 YKTMNN-QLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT-NW-CEAMST-YP-R 531 (626)
Q Consensus 457 y~~~~~-~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~-~e~~~~-yp-~ 531 (626)
|..++. .|.. .+++++|++|||.|-|.+.|+.+ +-.++.+|.++..++.+.+|-- +.-| .| ...++. .| .
T Consensus 31 ~~~~l~aaLp~-~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~-~~~~V~~~~~dvp~~~P~~ 105 (201)
T PF05401_consen 31 YRATLLAALPR-RRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLA-GLPHVEWIQADVPEFWPEG 105 (201)
T ss_dssp HHHHHHHHHTT-SSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTT-T-SSEEEEES-TTT---SS
T ss_pred HHHHHHHhcCc-cccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcC-CCCCeEEEECcCCCCCCCC
Confidence 444443 4667 89999999999999999999998 3588999999899999998764 1111 12 122333 35 9
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChH----------HHHHHHHHHHhCCCeeEEeecCCCCC
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVD----------ELVKVKRIIDALKWQSQIVDHEDGPL 601 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~----------~~~~~~~~~~~l~w~~~~~~~e~~~~ 601 (626)
+|||||++.++-++.+.-++..++..+...|+|||.+|+-.-.+ --+.|.++++..-=++.-..-..++
T Consensus 106 ~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~- 184 (201)
T PF05401_consen 106 RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS- 184 (201)
T ss_dssp -EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-
T ss_pred CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-
Confidence 99999999999999876677889999999999999999954322 2456667666665555544333333
Q ss_pred CcceEEEEE
Q 006905 602 EREKLLFAV 610 (626)
Q Consensus 602 ~~e~~l~~~ 610 (626)
..|.-|+++
T Consensus 185 ~~~~~~~~~ 193 (201)
T PF05401_consen 185 PNEDCLLAR 193 (201)
T ss_dssp TTSEEEEEE
T ss_pred CCCceEeee
Confidence 456666654
No 123
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.72 E-value=1.2e-07 Score=101.39 Aligned_cols=102 Identities=17% Similarity=0.151 Sum_probs=74.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEecccccc-
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCLIP- 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h- 287 (626)
+.+|||+|||+|.++..++.. .++++|+++.++..+..+. ...+.. +.+...|+..+|+++++||+|+++..+..
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl-~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINL-EHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS 261 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHH-HHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence 458999999999887766554 6888888876666544433 333443 46677888889988889999999753311
Q ss_pred ------cc-ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 ------WN-QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ------~~-~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. .....++.++.|+|||||++++..+
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 01 1126799999999999999999865
No 124
>PRK04266 fibrillarin; Provisional
Probab=98.72 E-value=8.5e-08 Score=97.32 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=69.5
Q ss_pred hccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc----CCCCCCCe
Q 006905 205 INLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER----LPYPSRAF 276 (626)
Q Consensus 205 l~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~----Lpf~d~sF 276 (626)
+.+.+ +.+|||+|||+|.++..|++. .|+++|+++.++.... +.++++ .++.+..+|... .+++ ++|
T Consensus 68 l~i~~--g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~ 142 (226)
T PRK04266 68 FPIKK--GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKV 142 (226)
T ss_pred CCCCC--CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccC
Confidence 44444 458999999999999999886 4899999886665332 344443 234555566543 1223 569
Q ss_pred eEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 277 DMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 277 DlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+|++.... +.....++.++.|+|||||.|+++.+
T Consensus 143 D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 143 DVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999875421 11224578999999999999999743
No 125
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.72 E-value=1.1e-07 Score=93.09 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=82.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCCCccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
-.+|||+|||.|.++.++++.. --.+|+.+|.++.+++.+.++ ++ +.++.. .....++..||+|.+++..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~--d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG--EAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec--CchhhcCcCCCEEEECCCc-
Confidence 5579999999999999987652 123789999988888877653 22 222221 1122346889999986543
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEc-ChHHHHHHHHHHHhCCCee
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRD-DVDELVKVKRIIDALKWQS 591 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d-~~~~~~~~~~~~~~l~w~~ 591 (626)
..+..++.++.|+|+|||++++.+ ..+...++.++++...++.
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 356789999999999999999976 4566778888888888853
No 126
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.72 E-value=2.1e-08 Score=89.88 Aligned_cols=101 Identities=24% Similarity=0.424 Sum_probs=69.6
Q ss_pred CEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC--CCCCCeeEEEecccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP--YPSRAFDMAHCSRCL 285 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp--f~d~sFDlV~~~~~l 285 (626)
.+|||+|||+|.++..+++. .++++|+++.....+..++. ..+. ++.+.+.|..... +++++||+|+++..+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLP-RNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCH-HCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHH-HccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 48999999999999888865 57788886643332222222 2333 4778888866654 778999999998876
Q ss_pred ccccc-------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQ-------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~-------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..... ....+++++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 53321 115789999999999999998753
No 127
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.71 E-value=6.9e-08 Score=81.75 Aligned_cols=99 Identities=24% Similarity=0.291 Sum_probs=68.4
Q ss_pred EEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCC-CCCCeeEEEecccccccc
Q 006905 214 TAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPY-PSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf-~d~sFDlV~~~~~l~h~~ 289 (626)
++||+|||.|.++..+++. .++++|+++...................+...+...... ..++||+|+++.+++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999999888872 677888766433322211111112235555566555442 467899999999885535
Q ss_pred ccHHHHHHHHHhcccCCeEEEEE
Q 006905 290 QFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 290 ~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.....++..+.+.|+|||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 55588999999999999999986
No 128
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.71 E-value=6.9e-08 Score=95.18 Aligned_cols=91 Identities=25% Similarity=0.222 Sum_probs=65.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc-C-CCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER-L-PYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~-L-pf~d~sFDlV~~~~~l~ 286 (626)
+.+|||+|||+|.++..+++. .++++|++ +.+++.+..+++ .+...+... + ++++++||+|+|+.+++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s-----~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEID-----QDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCC-----HHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 348999999999999988764 34566664 455566666664 344556543 4 47788999999999996
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|.. ++..+++++.|++++ .+++.
T Consensus 87 ~~~-d~~~~l~e~~r~~~~---~ii~~ 109 (194)
T TIGR02081 87 ATR-NPEEILDEMLRVGRH---AIVSF 109 (194)
T ss_pred cCc-CHHHHHHHHHHhCCe---EEEEc
Confidence 654 468899999887664 44543
No 129
>PTZ00146 fibrillarin; Provisional
Probab=98.70 E-value=1.5e-07 Score=98.33 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc---CCCCCCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER---LPYPSRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~---Lpf~d~sFDlV~~~ 282 (626)
++.+|||+|||+|.++.++++. .|+++|+++.+ .+.+++.+.++ .++...+.|+.. +.....+||+|++.
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~-~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRS-GRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHH-HHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 3459999999999999999986 49999998632 23455565544 344555666532 22234589999997
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 283 RCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 283 ~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.+. +++...++.++.++|||||+|+|.
T Consensus 210 va~---pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 210 VAQ---PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCC---cchHHHHHHHHHHhccCCCEEEEE
Confidence 742 333356778999999999999996
No 130
>PRK08317 hypothetical protein; Provisional
Probab=98.69 E-value=4.2e-08 Score=98.08 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=75.3
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh--cccceeccccccCCC--CC-Cccceeeecccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER--GLVGTYTNWCEAMST--YP-RTYDLIHADSVF 542 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r--gli~~~~~~~e~~~~--yp-~t~Dlih~~~~f 542 (626)
..-.+|||+|||.|.++..+++.---.-+|+.+|.++.+++.+.++ +.....+-....+.. ++ .+||+||+..+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 3356899999999999999987520112789999998999999887 211111111122222 34 899999999999
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.+.. +.+.+|.++.++|||||++++.+
T Consensus 98 ~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 8876 46889999999999999999865
No 131
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.69 E-value=6.4e-09 Score=90.87 Aligned_cols=91 Identities=21% Similarity=0.254 Sum_probs=56.5
Q ss_pred EeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceecccc-ccCCCCC-CccceeeeccccccC
Q 006905 474 LDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYTNWC-EAMSTYP-RTYDLIHADSVFSLY 545 (626)
Q Consensus 474 lD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~~~~-e~~~~yp-~t~Dlih~~~~f~~~ 545 (626)
||+|||+|.++..|+++- ....++.+|.++.+++.+.+|-- .....--. +.+...+ ++||+|.+..+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998873 34589999999999954444422 01111111 1222233 599999999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCcEE
Q 006905 546 KDRCETEDILLEMDRILRPEGGV 568 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~ 568 (626)
. +++.+|..+.++|||||.+
T Consensus 80 ~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----HHHHHHHHTTT-TSS-EE
T ss_pred h---hHHHHHHHHHHHcCCCCCC
Confidence 3 7799999999999999986
No 132
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.69 E-value=1.1e-07 Score=100.33 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=69.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEccccc-CCCCCC----CeeEEE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALER-GVPALIGVLAAER-LPYPSR----AFDMAH 280 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~er-g~~~~~~v~d~~~-Lpf~d~----sFDlV~ 280 (626)
+.+|||+|||+|..+..|+++ .++++|+++.++..++.+..... ++.+....+|... ++++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 458999999999998888765 57888887766665555444322 3455556677554 444332 233444
Q ss_pred ecccccccccc-HHHHHHHHHhcccCCeEEEEEeC
Q 006905 281 CSRCLIPWNQF-GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 281 ~~~~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+..++.++..+ ...+|+++.++|+|||.|+|...
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 44555455432 26799999999999999999753
No 133
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.67 E-value=1.8e-07 Score=92.63 Aligned_cols=150 Identities=13% Similarity=0.166 Sum_probs=95.8
Q ss_pred cCCChhhchh--hhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh
Q 006905 436 KGITPEIFQQ--NSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER 513 (626)
Q Consensus 436 ~~~~~~~f~~--d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r 513 (626)
+|+..+.|.. +...|+..+.. -.+..+.. ..-.+|||+|||.|.++..++..--...+|+.+|.++.+++.+.++
T Consensus 8 ~~~~d~~~~~~~~~~~t~~~~r~--~~l~~l~~-~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 8 PGIPDEEFERDEEIPMTKEEIRA--LALSKLRL-RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred CCCChHHHccCCCCCCCHHHHHH--HHHHHcCC-CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 3555566665 33567666642 12233333 3345799999999999987754310113689999998899876554
Q ss_pred ----cc---cceec-cccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHH
Q 006905 514 ----GL---VGTYT-NWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRII 584 (626)
Q Consensus 514 ----gl---i~~~~-~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~ 584 (626)
|+ +.+.. |..+.+..++..||+|.+.. ...++..+|.++.|+|||||.+++. -..+.+.++...+
T Consensus 85 ~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 158 (198)
T PRK00377 85 AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSAL 158 (198)
T ss_pred HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHH
Confidence 32 12222 22222222346899988743 1236788999999999999999983 3456677888888
Q ss_pred HhCCCeeEEe
Q 006905 585 DALKWQSQIV 594 (626)
Q Consensus 585 ~~l~w~~~~~ 594 (626)
+.+.++..+.
T Consensus 159 ~~~g~~~~~~ 168 (198)
T PRK00377 159 ENIGFNLEIT 168 (198)
T ss_pred HHcCCCeEEE
Confidence 8777765533
No 134
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.66 E-value=7.4e-08 Score=96.53 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=74.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--cceeccccccCCCCCCccceeeeccccccCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--VGTYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--i~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
-.+|||+|||.|.++..|++... ...++.+|.++.++..+.++.- +..+..=.+.+...+.+||+|.+..++.+..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~- 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD- 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc-
Confidence 36799999999999999988642 2257889999889888887753 2222211222332338999999999888765
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+...+|.++.|+|+|||.+++..
T Consensus 113 --~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 --DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEe
Confidence 56889999999999999999975
No 135
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=1.8e-08 Score=100.08 Aligned_cols=96 Identities=22% Similarity=0.277 Sum_probs=80.7
Q ss_pred CCEEEEeCCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHH---cCCCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSRN---IITMSFAPRDTHEAQVQFALE---RGVPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~---V~avdis~~dls~a~i~~A~e---rg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
...++|||||.|.+...|..++ ++-+|.+. .+++.++. .++.....+.|.+.|+|.+++||+|+++..+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~-----~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSY-----DMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecch-----HHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh
Confidence 4579999999999999999984 55666644 45555543 4555677888999999999999999999999
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
||.++....+.++...|||+|.|+-+.
T Consensus 148 -HW~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 148 -HWTNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred -hhhccCchHHHHHHHhcCCCccchhHH
Confidence 999999999999999999999998874
No 136
>PRK14968 putative methyltransferase; Provisional
Probab=98.66 E-value=2.9e-07 Score=89.19 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP---ALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~---~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+.+|||+|||+|.++..++.+ .++++|+++..+..++.+ ....+.. +.+...|... ++.+++||+|+++..+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCN-AKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHH-HHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 458999999999999998876 778888877544433322 2233332 5555556433 34556899999976553
Q ss_pred ccc--------------------ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWN--------------------QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~--------------------~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.. .....+++++.++|||||.+++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 311 0124579999999999999988754
No 137
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.66 E-value=6.2e-06 Score=88.76 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=86.3
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcccceeccccccCCCCCCccceeeeccccccCCC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
.|||+|||.|.++.+++++.- ...|+.+|.+..++..+.+ .|+-+.++ +...++..++.||+|.|+-.|.....
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCcc
Confidence 599999999999999987621 1268889999888887654 33322221 23334444689999999988874322
Q ss_pred --CCCHHHHHHHhhhhccCCcEEEEEcCh--HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEec
Q 006905 548 --RCETEDILLEMDRILRPEGGVIFRDDV--DELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 548 --~c~~~~~l~E~dRiLRPgG~~i~~d~~--~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
....+.++.++.|.|||||.++|--.. ..-..+++..... + +.. ++ .+-||+-++|.
T Consensus 277 ~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~--~la-~~---~~f~v~~a~~~ 337 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--E--VLA-QT---GRFKVYRAIMT 337 (342)
T ss_pred ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--E--EEE-eC---CCEEEEEEEcc
Confidence 123468999999999999999886432 2344555554432 2 221 11 35678877763
No 138
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.66 E-value=5.5e-08 Score=96.83 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=87.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCC-CC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMST-YP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~-yp-~t~Dlih~~~ 540 (626)
-.+|||+|||+|.++..|++.. --.+|+.+|.++.+++.+.++ ++ +.+++ |+.+.+.. ++ .+||+|.+..
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4689999999999999997752 113799999999999988764 33 23333 32234432 54 8999998754
Q ss_pred ccc-----cCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCCCeeEE
Q 006905 541 VFS-----LYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 541 ~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~~ 593 (626)
... +...+...+.+|.++.|+|||||.|+|. +.......+.+.+..-.|.+.+
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 322 1122234578999999999999999996 5666777777777777787663
No 139
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.65 E-value=3.3e-08 Score=93.48 Aligned_cols=98 Identities=19% Similarity=0.398 Sum_probs=75.5
Q ss_pred ceeEEeccCchhhHhhhhhC-C--CeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCC-CCCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALID-F--PVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMST-YPRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~-~--~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~-yp~t~Dlih~ 538 (626)
--+|||+|||+|.++..|++ . +. +++.+|.++.+++.+.++ |+ +-.++ |+-+ +.. |+..||+|.+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIIS 79 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEE
Confidence 45799999999999999994 2 44 689999999999998884 44 33444 2222 221 4479999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
..++.+.. +...+|.+|-|+|+|||.+++++..
T Consensus 80 ~~~l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFP---DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp ESTGGGTS---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCchhhcc---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99885554 5578999999999999999999876
No 140
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.65 E-value=2.3e-07 Score=92.69 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=69.9
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPS 273 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d 273 (626)
....+.+.+...+ ..+|||+|||+|.++..|++. .++++|+++..+..+..++ ...+. .+.+...|........
T Consensus 66 ~~~~l~~~l~~~~--~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~ 142 (212)
T PRK00312 66 MVARMTELLELKP--GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRL-KQLGLHNVSVRHGDGWKGWPAY 142 (212)
T ss_pred HHHHHHHhcCCCC--CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHH-HHCCCCceEEEECCcccCCCcC
Confidence 3344555554433 458999999999998877765 6788888764443333222 23344 3556666643322234
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+|++..++.+ +..++.+.|+|||.+++...
T Consensus 143 ~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 78999999876533 24567899999999999754
No 141
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.65 E-value=3e-07 Score=93.11 Aligned_cols=103 Identities=17% Similarity=0.066 Sum_probs=77.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHH------------HHHcCCCeEEEEcccccCCCC---CC
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQF------------ALERGVPALIGVLAAERLPYP---SR 274 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~------------A~erg~~~~~~v~d~~~Lpf~---d~ 274 (626)
+.+||+.|||.|.-+.+|+++ .|+++|+++..+.....+. ...++..+.+.++|...++.. .+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 458999999999999999998 5777777664443322210 012345678888998888632 26
Q ss_pred CeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.||+|+-..++++++.+. ..+.+.+.++|+|||.+++...
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 899999888888887665 7899999999999999998754
No 142
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.65 E-value=6.4e-08 Score=100.43 Aligned_cols=130 Identities=16% Similarity=0.207 Sum_probs=88.0
Q ss_pred hhchhhhHHHHHHHHHHHHhh-hhcCCCCCceeEEeccCchhh----HhhhhhCCC----eEEEEeccCccCcccHHHHH
Q 006905 441 EIFQQNSELWKKRLSYYKTMN-NQLGQSGRYRNILDMNAHLGG----FAAALIDFP----VWVMNVVPAEAKINTLGVIY 511 (626)
Q Consensus 441 ~~f~~d~~~w~~~v~~y~~~~-~~~~~~~~~r~vlD~g~g~G~----faa~l~~~~----v~~mnv~~~~~~~~~l~~~~ 511 (626)
..|-.|...|..-.+.....+ ..... +...+|+|+|||+|- .|..|++.. -|...|+++|.++.+|+.|.
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~-~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRH-GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCC-CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 347777788887555433322 21122 334689999999994 566665431 24568999999999999887
Q ss_pred Hhc--------c-------------------------cc-eeccccccCCCCC-CccceeeeccccccCCCCCCHHHHHH
Q 006905 512 ERG--------L-------------------------VG-TYTNWCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILL 556 (626)
Q Consensus 512 ~rg--------l-------------------------i~-~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~ 556 (626)
+.- + +. ..||..+ ..+| +.||+|.|..+|.+... -....++.
T Consensus 150 ~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~ 226 (264)
T smart00138 150 AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFDE-PTQRKLLN 226 (264)
T ss_pred cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCCH-HHHHHHHH
Confidence 531 1 01 1223222 1234 89999999999988753 24568999
Q ss_pred HhhhhccCCcEEEEEcCh
Q 006905 557 EMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 557 E~dRiLRPgG~~i~~d~~ 574 (626)
++.|+|+|||++++....
T Consensus 227 ~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 227 RFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHhCCCeEEEEECcc
Confidence 999999999999997654
No 143
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.64 E-value=2.8e-07 Score=94.11 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=83.4
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-CCeEEE
Q 006905 188 TMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERG-VPALIG 262 (626)
Q Consensus 188 t~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg-~~~~~~ 262 (626)
..|.-+.+.. .|..+..... ..+|||+|||+|..+..++++ .++++++.+.+...++.+.+...- ..+.+.
T Consensus 25 ~~~~~~~Dai--LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~ 100 (248)
T COG4123 25 CGFRYGTDAI--LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100 (248)
T ss_pred CccccccHHH--HHHhhccccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEe
Confidence 3455556655 3555655443 568999999999999999987 578888876555544444443111 135566
Q ss_pred EcccccCC--CCCCCeeEEEecccccccccc-----------------HHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 263 VLAAERLP--YPSRAFDMAHCSRCLIPWNQF-----------------GGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 263 v~d~~~Lp--f~d~sFDlV~~~~~l~h~~~~-----------------~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
..|...+. ....+||+|+||.-+..-... .+.+++...++|||||++.+..+|.
T Consensus 101 ~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred hhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 66765553 334579999998765322222 2467888999999999999996643
No 144
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.64 E-value=4.8e-08 Score=98.51 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=78.5
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec-cc----cccCCCCCCccceeeeccccccCC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT-NW----CEAMSTYPRTYDLIHADSVFSLYK 546 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~----~e~~~~yp~t~Dlih~~~~f~~~~ 546 (626)
.|||+|||-|.++..|+..|. +|+++|.++.+++++..+.+.+.+. ++ -|.+..--.+||+|-|..|+.|..
T Consensus 62 ~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred eEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 599999999999999999996 9999999999999999777744333 22 111111116999999999999988
Q ss_pred CCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 547 DRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 547 ~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+ .+.++.+..+.|||||.++++..
T Consensus 139 d---p~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 139 D---PESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred C---HHHHHHHHHHHcCCCcEEEEecc
Confidence 4 57899999999999999999854
No 145
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.63 E-value=1.6e-07 Score=93.13 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=71.5
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeE
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDM 278 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDl 278 (626)
.+.+.+... .....|-|+|||.+.++..+.+. .|...|+... +. .+..+|...+|.++++.|+
T Consensus 62 ~iI~~l~~~-~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~-------------n~--~Vtacdia~vPL~~~svDv 125 (219)
T PF05148_consen 62 VIIEWLKKR-PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP-------------NP--RVTACDIANVPLEDESVDV 125 (219)
T ss_dssp HHHHHHCTS--TTS-EEEES-TT-HHHHH--S---EEEEESS-S-------------ST--TEEES-TTS-S--TT-EEE
T ss_pred HHHHHHHhc-CCCEEEEECCCchHHHHHhcccCceEEEeeccCC-------------CC--CEEEecCccCcCCCCceeE
Confidence 344444422 22458999999999999877643 5666666331 11 2456789999999999999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhccc
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEK 354 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~ 354 (626)
|++..+| +..+...++.|+.|+|||||.|+|..-.. ++ + ....+.+..++++++...+.
T Consensus 126 ~VfcLSL--MGTn~~~fi~EA~RvLK~~G~L~IAEV~S----Rf-------~----~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 126 AVFCLSL--MGTNWPDFIREANRVLKPGGILKIAEVKS----RF-------E----NVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp EEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEEGG----G--------S-----HHHHHHHHHCTTEEEEEEE
T ss_pred EEEEhhh--hCCCcHHHHHHHHheeccCcEEEEEEecc----cC-------c----CHHHHHHHHHHCCCeEEecc
Confidence 9998887 44556899999999999999999985311 11 0 12334455678888776643
No 146
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.63 E-value=1.1e-07 Score=96.22 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=86.6
Q ss_pred hcCCCCCceeEEeccCchhhHhhhhhCCCeEE------EEeccCccCcccHHHHHHhcccc---------eeccccccCC
Q 006905 463 QLGQSGRYRNILDMNAHLGGFAAALIDFPVWV------MNVVPAEAKINTLGVIYERGLVG---------TYTNWCEAMS 527 (626)
Q Consensus 463 ~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~------mnv~~~~~~~~~l~~~~~rgli~---------~~~~~~e~~~ 527 (626)
.|++ +.--+||||+||+|-.|..+.+. |-. -+|+-.|.+++||.+..+|..-+ ..-.-.|.++
T Consensus 95 ~L~p-~~~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 95 KLGP-GKGMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred ccCC-CCCCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 3566 56688999999999998888765 222 47788888899999988887311 1111246666
Q ss_pred CCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChHHH-HHHHHHHHhCCCe
Q 006905 528 TYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDEL-VKVKRIIDALKWQ 590 (626)
Q Consensus 528 ~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~-~~~~~~~~~l~w~ 590 (626)
|| .+||+.....-.-... +++.+|.|+.|||||||.|.+-+=..+. ..|+.+.+.---+
T Consensus 173 -Fdd~s~D~yTiafGIRN~t---h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 173 -FDDDSFDAYTIAFGIRNVT---HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred -CCCCcceeEEEecceecCC---CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 78 9999988743333444 5699999999999999999987655443 4555555544333
No 147
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.63 E-value=2.2e-07 Score=89.64 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=71.7
Q ss_pred EEEEeCCCCchHHHHHhhCC----cEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEeccc---
Q 006905 214 TAIDTGCGVASWGAYLLSRN----IITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRC--- 284 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~~----V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~--- 284 (626)
+|||+|||+|.+...|++.+ .+++|.++..+.- +.+.|+.++.+ +.|.+.|...-.+..+.||+|+--..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L-A~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL-AQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH-HHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 89999999999999999973 5666666543322 33345566666 78888887666777888999985322
Q ss_pred --ccccc--ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 --LIPWN--QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 --l~h~~--~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|++-. ..+..++..+.++|+|||.|+|..-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 22111 1124688999999999999999853
No 148
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.62 E-value=1e-07 Score=100.09 Aligned_cols=115 Identities=12% Similarity=0.151 Sum_probs=82.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccc----eeccccccCCCC-CCccceeeeccccccC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVG----TYTNWCEAMSTY-PRTYDLIHADSVFSLY 545 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~----~~~~~~e~~~~y-p~t~Dlih~~~~f~~~ 545 (626)
.+|||+|||+|.++.++++.+. -+|+.+|.++.+++.+.++.-.. .....+...... +..||+|+|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 6799999999999988887764 37899999999999887764311 111112223333 37999999965432
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEEe
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~ 594 (626)
.+..++.++.|+|||||+++++.-. +....+.+.+++. |+...+
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 3467899999999999999998654 3456677766665 766543
No 149
>PRK14968 putative methyltransferase; Provisional
Probab=98.61 E-value=1.7e-07 Score=90.85 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=91.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc----cc-eeccccccCCCCC-Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL----VG-TYTNWCEAMSTYP-RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl----i~-~~~~~~e~~~~yp-~t~Dlih~~ 539 (626)
..+|||+|||.|.++..|++++. +|+.+|.+++++..+.++ ++ +. ..+|+.+ .++ .+||+|-++
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEEC
Confidence 45799999999999999998864 899999998898887443 22 22 2234433 344 589999876
Q ss_pred cccccCC------------------CCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCeeEEeecCCCC
Q 006905 540 SVFSLYK------------------DRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQSQIVDHEDGP 600 (626)
Q Consensus 540 ~~f~~~~------------------~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~~~e~~~ 600 (626)
..|.... ....++.++.++.|+|||||.+++-.. ......+.+.+....|++.....+.-.
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence 6553311 012256789999999999999887543 234567888888888887654333333
Q ss_pred CCcceEEEEEe
Q 006905 601 LEREKLLFAVK 611 (626)
Q Consensus 601 ~~~e~~l~~~K 611 (626)
++.-.+++.+|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 33334454443
No 150
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.61 E-value=3.1e-07 Score=90.99 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=68.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CCCCCCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LPYPSRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lpf~d~sFDlV~~~ 282 (626)
.+.+|||+|||+|.++..++.. .++++|+++.++..++. .+...++ .+.+...|... ++..++.||+|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~-n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR-NAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 4558999999999998876542 58899998755543332 3334442 35555556544 33334689999985
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 283 RCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 283 ~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
... .....++.++.++|||||++++..
T Consensus 119 ~~~----~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 119 GGS----EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCc----ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 422 235789999999999999999864
No 151
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=1e-07 Score=98.91 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=84.4
Q ss_pred HHHHHHHhhhh--cCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHH----HHhcccceecccccc
Q 006905 453 RLSYYKTMNNQ--LGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVI----YERGLVGTYTNWCEA 525 (626)
Q Consensus 453 ~v~~y~~~~~~--~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~----~~rgli~~~~~~~e~ 525 (626)
+...+..++.. |.+ --+|||+|||-|+++.+++++ +| ||++++.|++++..+ .++|+..-.+---..
T Consensus 57 Q~~k~~~~~~kl~L~~---G~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d 130 (283)
T COG2230 57 QRAKLDLILEKLGLKP---GMTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD 130 (283)
T ss_pred HHHHHHHHHHhcCCCC---CCEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc
Confidence 33334344433 555 456999999999999999987 77 999999999998865 557774322211123
Q ss_pred CCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 526 MSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 526 ~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
..+++..||=|.+.++|.|.... +.++.+.-++++|+|||.+++-
T Consensus 131 ~rd~~e~fDrIvSvgmfEhvg~~-~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 131 YRDFEEPFDRIVSVGMFEHVGKE-NYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred ccccccccceeeehhhHHHhCcc-cHHHHHHHHHhhcCCCceEEEE
Confidence 34455669999999999998874 7899999999999999999884
No 152
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.59 E-value=2.4e-07 Score=95.21 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=88.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC---CccceeeeccccccCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP---RTYDLIHADSVFSLYK 546 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp---~t~Dlih~~~~f~~~~ 546 (626)
-.+|||+|||+|..+.++++.+.- .|+.+|.++.+++.+.++.-...+. ..+ ..+ .+||+|.|+...
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~---~~~-~~~~~~~~fD~Vvani~~---- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVE---LNV-YLPQGDLKADVIVANILA---- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCC---ceE-EEccCCCCcCEEEEcCcH----
Confidence 457999999999999988887652 4899999999999887764211111 111 112 279999985332
Q ss_pred CCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 547 DRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 547 ~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
-.+..++.++.|+|||||++|+++.. +....+...++...++......+ +.-..++++|
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~ 249 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKK 249 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEe
Confidence 12457889999999999999999754 45677888888888887654333 2344556655
No 153
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.59 E-value=8.1e-07 Score=97.09 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=69.6
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC-CCCeeEEEecccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP-SRAFDMAHCSRCLIP 287 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~-d~sFDlV~~~~~l~h 287 (626)
.+|||+|||+|.++..++.. .++++|+++.++..++.+ +...+..+.+..+|.....++ .++||+|+|+...+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 48999999999999888753 588999988666544433 334456677777775443332 457999999875432
Q ss_pred ccc--------------------cH----HHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQ--------------------FG----GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~--------------------~~----~~~L~Ei~RvLKPGG~lvis~p 314 (626)
-.+ +. ..++.++.+.|+|||.+++...
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 110 00 2566777889999999998753
No 154
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.59 E-value=9.1e-07 Score=91.46 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=66.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
..+|||+|||+|.++..++.. .++++|+++..+..+..+........+.+...|... ++++++||+|+++.....
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 458999999999999988875 578888877544433333221112245666666432 233578999999754321
Q ss_pred cc-------------------------ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 288 WN-------------------------QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 288 ~~-------------------------~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.. .....++.++.++|+|||++++..
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 10 001457788889999999999964
No 155
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.58 E-value=5e-07 Score=88.65 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=63.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--------CCCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--------YPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--------f~d~sFDl 278 (626)
+.+|||+|||+|.++..++++ .++++|+++.. ....+.+...|....+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 458999999999998877664 38899997732 1122445555654432 45678999
Q ss_pred EEeccccc---cccc-------cHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLI---PWNQ-------FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~---h~~~-------~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|++..+.+ +|.. ....++.++.++|+|||++++..
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99965421 1111 12578999999999999999974
No 156
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.58 E-value=1.6e-06 Score=90.93 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
..+|||+|||+|.++..++.+ .++++|+++..+..++. .+...++ .+.+...|... ++++++||+|+++...
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~-n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 458999999999999999875 58888887755544333 3334454 35666666432 2345689999997432
Q ss_pred ccc-------------c-----------ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPW-------------N-----------QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~-------------~-----------~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
... + .....++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 110 0 0014678899999999999999754
No 157
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.57 E-value=8e-08 Score=99.56 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=70.2
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc----c--cceeccccccCC--CCC-Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG----L--VGTYTNWCEAMS--TYP-RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg----l--i~~~~~~~e~~~--~yp-~t~Dlih~~ 539 (626)
-.+|||+|||.|..+..+++. +. ...|+.+|.++++++.+.+++ + +.+.+ ..+. ++| ++||+|+++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~---~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRL---GEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE---cchhhCCCCCCceeEEEEc
Confidence 458999999999866554432 11 126889999999999988753 2 11222 2222 244 799999999
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.++.+.. +.+.+|.|+.|+|||||++++.|
T Consensus 154 ~v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 154 CVINLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CcccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 8887765 45889999999999999999975
No 158
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.56 E-value=7.5e-07 Score=87.97 Aligned_cols=107 Identities=16% Similarity=0.046 Sum_probs=69.5
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc-CCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER-LPYPS 273 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~-Lpf~d 273 (626)
.+...+... .+.+|||+|||+|.++..++.. .++++|+++..+..++.+ +.+.+. .+.+...|+.. ++...
T Consensus 31 ~l~~~l~~~--~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n-~~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 31 LLISQLRLE--PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRN-CDRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCeEEEECchHHHHhhCC
Confidence 345555433 3458999999999999888643 688999988655544333 333444 35555555432 33222
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+|.|+... ......++.++.++|+|||+|++..+
T Consensus 108 ~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 108 PAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 3467765422 22347899999999999999999854
No 159
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.55 E-value=8.1e-08 Score=94.86 Aligned_cols=116 Identities=19% Similarity=0.272 Sum_probs=80.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHH----HHHHhcccceeccccccCCC--CCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG----VIYERGLVGTYTNWCEAMST--YPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~----~~~~rgli~~~~~~~e~~~~--yp~t~Dlih~~~~f~~ 544 (626)
-.|||+|||.|.-|.+|+++|. +|+.+|.++..++ ++-+++|- ++.++..+.+ +|..||+|.+..+|.+
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~f 106 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMF 106 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGG
T ss_pred CcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEecc
Confidence 4799999999999999999997 7888998876655 44456662 2333344444 4589999999989988
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEE---c--------ChHHH---HHHHHHHHhCCCeeEEe
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFR---D--------DVDEL---VKVKRIIDALKWQSQIV 594 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~---d--------~~~~~---~~~~~~~~~l~w~~~~~ 594 (626)
+.. -.++.++..|..-|+|||++++- + +.+.+ .+++.... .|++..+
T Consensus 107 L~~-~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 107 LQR-ELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp S-G-GGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred CCH-HHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 874 47889999999999999998883 1 11222 34555555 4998754
No 160
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.55 E-value=2.2e-07 Score=99.58 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=86.1
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc---cceeccccccCCCCC-Cccceeeecccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL---VGTYTNWCEAMSTYP-RTYDLIHADSVFSL 544 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl---i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~ 544 (626)
-.+|||+|||+|.++..+++. +- .+|+.+|.+++|+..+.++.- +.+.+.-.+.+ .++ ++||+|.+..++.+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-PFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-CCCCCceeEEEEcChhhh
Confidence 457999999999998888764 21 378899999999999888642 23333212222 244 89999999988887
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcChH-----------------HHHHHHHHHHhCCCeeEE
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDDVD-----------------ELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~-----------------~~~~~~~~~~~l~w~~~~ 593 (626)
..+ .+.+|.|+.|+|||||.+++.+... ..+++.+++++..++...
T Consensus 191 ~~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 191 WPD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred CCC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 764 4789999999999999998864321 236666777777787543
No 161
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.55 E-value=9.2e-07 Score=87.83 Aligned_cols=116 Identities=17% Similarity=0.320 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEE--EEcccc
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALI--GVLAAE 267 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~--~v~d~~ 267 (626)
.+...+.|.++++.. ..+|||||+|||..+.+++++ .....|++.... ........+.+.+... ...|+.
T Consensus 11 k~pIl~vL~~~l~~~---~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 11 KDPILEVLKQYLPDS---GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLALDVS 86 (204)
T ss_pred HhHHHHHHHHHhCcc---CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEeecC
Confidence 344555556555322 226999999999999988886 344445544221 1122223333432111 122322
Q ss_pred c--CCC------CCCCeeEEEeccccccccccH--HHHHHHHHhcccCCeEEEEEeC
Q 006905 268 R--LPY------PSRAFDMAHCSRCLIPWNQFG--GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 268 ~--Lpf------~d~sFDlV~~~~~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. .|. ..++||+|+|.+++ |..... ..+|..+.++|+|||.|++-+|
T Consensus 87 ~~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 87 APPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred CCCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 2 232 35689999999988 554433 7899999999999999999876
No 162
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.54 E-value=1.8e-07 Score=93.42 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=74.0
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC-CccceeeeccccccCC
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP-RTYDLIHADSVFSLYK 546 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~ 546 (626)
...|||+|||+|.++..|++. +- .+++++|.++++++.+.++.- +.+.+. ..+.+++ ++||+|.+.+++.|..
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~--d~~~~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQG--SLFDPFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEe--eccCCCCCCCEEEEEECChhhhCC
Confidence 457999999999999999876 21 279999999999999988532 233331 1223455 8999999999999875
Q ss_pred CCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 547 DRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 547 ~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.-++..+|.||.|++ +++++|.+
T Consensus 120 -p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 -PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred -HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 346788999999998 57888864
No 163
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.54 E-value=1.7e-07 Score=89.84 Aligned_cols=78 Identities=19% Similarity=0.067 Sum_probs=57.8
Q ss_pred EEeCCccchHHHHHHHHHHc---CCCeEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 236 TMSFAPRDTHEAQVQFALER---GVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 236 avdis~~dls~a~i~~A~er---g~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
++|+++.++..+..+..... ...+.+.++|+..+|+++++||+|++..+++++ .+...+|+|+.|+|||||.|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEEE
Confidence 56666655544332221111 124678888999999999999999999999555 45799999999999999999987
Q ss_pred eC
Q 006905 313 GP 314 (626)
Q Consensus 313 ~p 314 (626)
..
T Consensus 81 d~ 82 (160)
T PLN02232 81 DF 82 (160)
T ss_pred EC
Confidence 53
No 164
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.54 E-value=1.5e-06 Score=91.05 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=68.2
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+.. +.+..+|... ++++++||+|+++...+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~-n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE-NAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 58999999999999988874 68888887755543333 23334543 6666666433 34445899999974221
Q ss_pred cc-------------c-----------ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PW-------------N-----------QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~-------------~-----------~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. + .....++.++.++|+|||++++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11 0 0124678899999999999999754
No 165
>PRK06922 hypothetical protein; Provisional
Probab=98.53 E-value=1.4e-07 Score=107.53 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=74.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cceeccccccCCC-CC-Cccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VGTYTNWCEAMST-YP-RTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~~e~~~~-yp-~t~Dlih~~~~f~ 543 (626)
.+|||+|||+|.++..|++.. -..+|+++|.+++|++.+.++.- +.+++.=+..++. ++ ++||+|.++.++.
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 579999999999998887641 12489999999999998877631 1222222233332 44 8999999987766
Q ss_pred cCC----------CCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 544 LYK----------DRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 544 ~~~----------~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
++- +..++..+|.|+.|+|||||.+++.|.
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 431 123567899999999999999999974
No 166
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.52 E-value=3.4e-07 Score=90.99 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=73.4
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCC--CC-Cccceeeeccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMST--YP-RTYDLIHADSV 541 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~--yp-~t~Dlih~~~~ 541 (626)
.-.+|||+|||.|.++.++++..--..+++.+|.++.++..+.++.- +..++ ..+.. ++ .+||+|++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~---~d~~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQ---ADAEALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEe---cchhcCCCCCCcEEEEEEeee
Confidence 35689999999999999998763211368888888888888887752 22333 22222 33 78999999888
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.+.. ++..+|.++.++|||||++++.+
T Consensus 116 ~~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 116 LRNVT---DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eCCcc---cHHHHHHHHHHHcCCCcEEEEEE
Confidence 76654 56889999999999999999865
No 167
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.52 E-value=2.6e-08 Score=87.62 Aligned_cols=90 Identities=23% Similarity=0.266 Sum_probs=66.3
Q ss_pred EEeccCchhhHhhhhhCCC--eEEEEeccCccCcccHHHHHHhcc-----cceeccccccCCCCC---Cccceeeeccc-
Q 006905 473 ILDMNAHLGGFAAALIDFP--VWVMNVVPAEAKINTLGVIYERGL-----VGTYTNWCEAMSTYP---RTYDLIHADSV- 541 (626)
Q Consensus 473 vlD~g~g~G~faa~l~~~~--v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~~e~~~~yp---~t~Dlih~~~~- 541 (626)
|||+|||.|....+|++.- ---.++..+|.++++|..+.++.- +..+ +..+..+| ++||+|-+.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~---~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFV---QADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEE---ESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEE---ECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999998652 011489999999999999999883 2233 34444444 79999999655
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEG 566 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG 566 (626)
|.+.. .-.++.+|.++-++|||||
T Consensus 78 ~~~~~-~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLS-PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSS-HHHHHHHHHHHHHTEEEEE
T ss_pred cCCCC-HHHHHHHHHHHHHHhCCCC
Confidence 77754 3467899999999999998
No 168
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.52 E-value=4.7e-07 Score=96.86 Aligned_cols=104 Identities=23% Similarity=0.300 Sum_probs=68.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHH------c----CCCeEEEEccccc------CCC
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALE------R----GVPALIGVLAAER------LPY 271 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~e------r----g~~~~~~v~d~~~------Lpf 271 (626)
...+|||||||-|.-..-.... .++++|++...+.++..+...- + ...+.+...|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 4679999999987654444443 6889999887777666555211 1 1235566665321 222
Q ss_pred CCCCeeEEEeccccccccccH---HHHHHHHHhcccCCeEEEEEeC
Q 006905 272 PSRAFDMAHCSRCLIPWNQFG---GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~~~---~~~L~Ei~RvLKPGG~lvis~p 314 (626)
....||+|-|-+++|+..... ..+|..+...|||||+|+.+.|
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 235999999999997766554 4699999999999999999976
No 169
>PRK06202 hypothetical protein; Provisional
Probab=98.52 E-value=4e-07 Score=92.25 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=74.6
Q ss_pred CCceeEEeccCchhhHhhhhhC----CCeEEEEeccCccCcccHHHHHHhcc---cceeccccccCCCCCCccceeeecc
Q 006905 468 GRYRNILDMNAHLGGFAAALID----FPVWVMNVVPAEAKINTLGVIYERGL---VGTYTNWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~----~~v~~mnv~~~~~~~~~l~~~~~rgl---i~~~~~~~e~~~~yp~t~Dlih~~~ 540 (626)
....+|||+|||+|.++..|++ .+ ...+|+++|.+++|++.+.++.. +.....-++.+..-+.+||+|.|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDG-LRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCC-CCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 4456899999999999888864 22 12379999999999999988742 1122211234444348999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+|.|..+. ++..+|.||.|++| |.+++.|.
T Consensus 138 ~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 138 FLHHLDDA-EVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred eeecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence 99988753 35679999999999 56666653
No 170
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.51 E-value=4.7e-07 Score=91.65 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=77.4
Q ss_pred CCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQF 291 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~ 291 (626)
...|-|+|||-+.++.. ....|..+|+.+. .-.+..+|+.++|.+|++.|++++..+| +..+
T Consensus 181 ~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLSL--Mgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS-ERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLSL--MGTN 242 (325)
T ss_pred ceEEEecccchhhhhhc-cccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHhh--hccc
Confidence 45799999999987751 1236777777442 1235567888999999999999987776 4556
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhccc
Q 006905 292 GGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEK 354 (626)
Q Consensus 292 ~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~ 354 (626)
...+++|+.|+|+|||.|+|..-... + .+ ...+.+....+++......
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SR----f-------~d----v~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSR----F-------SD----VKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhh----c-------cc----HHHHHHHHHHcCCeeeehh
Confidence 68999999999999999999753111 1 11 1225555677887665543
No 171
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.49 E-value=2.8e-07 Score=91.13 Aligned_cols=121 Identities=13% Similarity=0.177 Sum_probs=81.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCC--CCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMS--TYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~--~yp-~t~Dlih~~~ 540 (626)
-..|||+|||.|.++.+|+.+.- -.||+.+|.+..++..+.++ |+ +.+++.-.+.+. .+| .++|.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45799999999999999987621 23899999998998877653 33 223332111111 145 6999998753
Q ss_pred ccc-----cCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCC-Cee
Q 006905 541 VFS-----LYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALK-WQS 591 (626)
Q Consensus 541 ~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~-w~~ 591 (626)
--. |...|...+.+|.++.|+|||||.+++. |..+....+.+.+...- |+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 222 2234555678999999999999999885 66666666666555433 443
No 172
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.48 E-value=3e-06 Score=87.40 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc-
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER- 268 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~- 268 (626)
....++.+...+... ....+|||+|||+|.++..++.. .++++|+++..+..++.+ +...+. .+...|...
T Consensus 70 Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~~--~~~~~D~~~~ 145 (251)
T TIGR03704 70 TEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAGG--TVHEGDLYDA 145 (251)
T ss_pred HHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCC--EEEEeechhh
Confidence 344444444443211 12348999999999999888764 588888877555443333 223343 455556433
Q ss_pred CCC-CCCCeeEEEecccccccc---------------------cc----HHHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LPY-PSRAFDMAHCSRCLIPWN---------------------QF----GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lpf-~d~sFDlV~~~~~l~h~~---------------------~~----~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++. ..+.||+|+++.-..... .+ ...++..+.++|+|||.+++...
T Consensus 146 l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 146 LPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred cchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 221 135799999987443211 00 12677778899999999999854
No 173
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.46 E-value=1.3e-06 Score=93.17 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=70.8
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP 270 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp 270 (626)
....+.+.+...+ +.+|||||||+|.++..+++. .|+++|+++..+..++ +.+...+.. +.+..+|....+
T Consensus 68 l~a~ll~~L~i~~--g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar-~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCCC--CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCChhhcc
Confidence 3334445554443 458999999999999998874 2788888775444333 233344543 556666755554
Q ss_pred CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
...+.||+|++...+.+ ....+.++|+|||.+++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 44567999999765422 2345678999999998853
No 174
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.45 E-value=6.9e-07 Score=89.46 Aligned_cols=125 Identities=16% Similarity=0.217 Sum_probs=83.4
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--c
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--V 516 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i 516 (626)
|....++=..++......+..........+|||+|||.|.++..+++.+. .++.+|.++.++..+.++ ++ +
T Consensus 19 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~ 95 (224)
T TIGR01983 19 FKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKI 95 (224)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCce
Confidence 44444443444554444443211002245899999999999999988754 588899988888877664 22 2
Q ss_pred ceeccccccCC-CCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 517 GTYTNWCEAMS-TYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 517 ~~~~~~~e~~~-~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
...+.-.+.+. ..+.+||+|++..++.+.. +...+|.++.++|+|||.+++++.
T Consensus 96 ~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 96 EYRCTSVEDLAEKGAKSFDVVTCMEVLEHVP---DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEEeCCHHHhhcCCCCCccEEEehhHHHhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 22221112222 2247999999988887765 568899999999999999999753
No 175
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.45 E-value=1.7e-07 Score=93.52 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=66.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHc-----CCCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALER-----GVPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~er-----g~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
...++||.|+|.|..+..|+-..+..||+. +..+..++.|.+. .....+.....+.+.-+.+.||+|++-+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 356899999999999998877644444442 2344566666532 112344555666665445799999999999
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.|..++. ..+|+.+...|+|+|.+++-.
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 9998765 789999999999999999954
No 176
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.45 E-value=4.5e-07 Score=91.02 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=77.1
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccc----eeccccccCCCCCCccceeeecccccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVG----TYTNWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~----~~~~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
...+|||+|||.|.++.+|++.+. .|+.+|.+++++..+.++.-.. -..-.+..+...|.+||+|-+..++.+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 357899999999999999998865 7899999999999998874311 111122344445689999999888877
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
... .++..++.++.|+++|++++.+...
T Consensus 132 ~~~-~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 132 YPA-SDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred CCH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 643 3567899999999999888887643
No 177
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.45 E-value=2.5e-06 Score=90.50 Aligned_cols=100 Identities=12% Similarity=0.100 Sum_probs=68.4
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
.+|||+|||+|.++..++.. .++++|+++..+..++. .+...++ .+.+...|... ++++++||+|+|+....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~-n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 58999999999999998875 68888887755554333 3334454 36666666432 23456899999974321
Q ss_pred c-------------ccc-----------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 P-------------WNQ-----------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h-------------~~~-----------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. .+. ....++.++.++|+|||.+++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 100 014678999999999999999743
No 178
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.45 E-value=1.6e-07 Score=92.18 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=81.0
Q ss_pred eecCCCCCCCCCcHHHHHHHHHHhhccC----CCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHH
Q 006905 181 FRFPGGGTMFPNGADAYIDDIGKLINLN----DGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALE 254 (626)
Q Consensus 181 ~~Fp~ggt~F~~ga~~yi~~L~~ll~l~----~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~e 254 (626)
=.|-|.|+||--..+ ++.+++... +....++||+|+|.|.++..|+.. .|.+++ ++..|+....+
T Consensus 82 NG~lgrGsMFifSe~----QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATE-----lS~tMr~rL~k 152 (288)
T KOG3987|consen 82 NGFLGRGSMFIFSEE----QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATE-----LSWTMRDRLKK 152 (288)
T ss_pred ccccccCceEEecHH----HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHH-----hhHHHHHHHhh
Confidence 345667777754444 344555433 223578999999999999998875 555554 45667777766
Q ss_pred cCCCeEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccC-CeEEEEE
Q 006905 255 RGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRP-GGYWILS 312 (626)
Q Consensus 255 rg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKP-GG~lvis 312 (626)
.+..+. ......--+-.||+|.|...+ .-..++..+|+++..+|+| .|..+++
T Consensus 153 k~ynVl----~~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 153 KNYNVL----TEIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred cCCcee----eehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 664322 222222234579999998877 5556679999999999999 8888886
No 179
>PRK00811 spermidine synthase; Provisional
Probab=98.42 E-value=2.8e-06 Score=89.06 Aligned_cols=103 Identities=11% Similarity=0.092 Sum_probs=69.3
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH-----cCCCeEEEEccccc-CCCCCCCeeEE
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE-----RGVPALIGVLAAER-LPYPSRAFDMA 279 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e-----rg~~~~~~v~d~~~-Lpf~d~sFDlV 279 (626)
...++||+||||+|..+..++++ .|+++|+++..+..+...+... ....+.+...|+.. +...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 34568999999999999998876 5788888775444333222211 12235666667443 33356789999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCeEEEEEe
Q 006905 280 HCSRCLIPWNQF----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 280 ~~~~~l~h~~~~----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++...- ++... ...+++.+.++|+|||.+++..
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 986533 33221 1578899999999999999863
No 180
>PRK04266 fibrillarin; Provisional
Probab=98.42 E-value=2.2e-06 Score=87.08 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=77.2
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh-----cccceeccccccC--CCCCCccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER-----GLVGTYTNWCEAM--STYPRTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r-----gli~~~~~~~e~~--~~yp~t~Dlih~~~~f~ 543 (626)
-.|||+|||+|+++.+|++.-- .-.|..+|.++.|++.+.++ ++.....|-.+.. ...+.+||+|-++..
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~-- 150 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVA-- 150 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCC--
Confidence 4699999999999999987610 12588889998888755433 2222222322211 123477998765211
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEE------cC----hHHHHHHHHHHHhCCCeeE-EeecCCCCC-CcceEEEEEe
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFR------DD----VDELVKVKRIIDALKWQSQ-IVDHEDGPL-EREKLLFAVK 611 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~------d~----~~~~~~~~~~~~~l~w~~~-~~~~e~~~~-~~e~~l~~~K 611 (626)
..-....+|.|+.|+|||||.++|+ |. ........+.++.-..+.. .++. +|. ...-.+|++|
T Consensus 151 ---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l--~p~~~~h~~~v~~~ 225 (226)
T PRK04266 151 ---QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL--EPYHKDHAAVVARK 225 (226)
T ss_pred ---ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC--CCCcCCeEEEEEEc
Confidence 1001134688999999999999993 32 1222233355554445443 2222 333 2355666665
Q ss_pred c
Q 006905 612 L 612 (626)
Q Consensus 612 ~ 612 (626)
+
T Consensus 226 ~ 226 (226)
T PRK04266 226 K 226 (226)
T ss_pred C
Confidence 3
No 181
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.42 E-value=8.3e-07 Score=89.05 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER 268 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~ 268 (626)
......+.+.+.+.++ .+|||||||+|.+++.|+.. .|++++..+.-...+. +.....+. ++.+..+|...
T Consensus 58 P~~~a~~l~~L~l~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~-~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 58 PSMVARMLEALDLKPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERAR-RNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHH-HHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHhcCCC--CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHH-HHHHHhccCceeEEEcchhh
Confidence 4455566677766654 49999999999999988875 3778888773333333 33333344 46677777443
Q ss_pred CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
---....||.|++..+.... -..+.+.||+||.+++...
T Consensus 135 g~~~~apfD~I~v~~a~~~i-------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEI-------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred ccccCCCcCEEEEeeccchH-------HHHHHHhcCCCcEEEEEEc
Confidence 22235679999998876222 1346778999999999743
No 182
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.41 E-value=3.8e-06 Score=84.31 Aligned_cols=99 Identities=24% Similarity=0.289 Sum_probs=71.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c---cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L---VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l---i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-..|||+|||.|.++..+++..--.-+++.+|.++++++.+.++- + +.+.+.-.+.+. ++ .+||+|++..+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~~ 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAFG 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEecc
Confidence 357999999999999998776310137889999888888887763 1 233331111111 33 78999999777
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.+.. +...+|.++.++|+|||.+++.+
T Consensus 131 l~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LRNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 66544 67899999999999999999864
No 183
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.40 E-value=4e-07 Score=89.32 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=75.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccC------CCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAM------STYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~------~~yp-~t~Dlih~~~~f 542 (626)
-.+|||+|||+|+++..++++..-.-.|+.+|.++.+ . ..++--+..|..+.. ..+| .+||+|-++...
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~ 108 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-P---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAP 108 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-c---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCC
Confidence 3579999999999998887652111246777777433 1 123211122332211 1244 789999986542
Q ss_pred c--------cCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCCCeeEEe-ecCCCCCCcceEEEEE
Q 006905 543 S--------LYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALKWQSQIV-DHEDGPLEREKLLFAV 610 (626)
Q Consensus 543 ~--------~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~~~-~~e~~~~~~e~~l~~~ 610 (626)
. +....++++.+|.++.|+|||||.+++. ...+.+.++-..++..=|...+. |.-......|+.+||.
T Consensus 109 ~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 109 NISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 1 1111123467999999999999999994 22222222222222222444433 2222233578999985
No 184
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=2.2e-06 Score=94.87 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--CCCCCeeEEEeccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--YPSRAFDMAHCSRC 284 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--f~d~sFDlV~~~~~ 284 (626)
++.+|||+|||+|..+..++++ .++++|+++..+...+ +.+...|..+.+...|...++ ++.++||.|++...
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 3568999999999999888875 5888888776555433 334455666677777776654 34678999995331
Q ss_pred cc-----------ccccc----------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LI-----------PWNQF----------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~-----------h~~~~----------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. .|... ...+|.++.++|||||++++++-
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 10 12111 13689999999999999999864
No 185
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.40 E-value=1.3e-06 Score=84.25 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=68.0
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCee
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFD 277 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFD 277 (626)
.+.+.+.... +.++||+|||+|.++..++++ .++++|+++......+.+.. ....+.+...|+..+++++..||
T Consensus 4 ~i~~~~~~~~--~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~--~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAANLRP--GDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA--AADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcCCCC--cCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhc--cCCCEEEEECchhcCCccccCCC
Confidence 3444443333 458999999999999999987 67888886643332222111 11246677788888888877899
Q ss_pred EEEeccccccccccHHHHHHHHHhc--ccCCeEEEEE
Q 006905 278 MAHCSRCLIPWNQFGGIYLIEVDRV--LRPGGYWILS 312 (626)
Q Consensus 278 lV~~~~~l~h~~~~~~~~L~Ei~Rv--LKPGG~lvis 312 (626)
.|+++..+ +.. ...+..+.+. +.++|.|++.
T Consensus 80 ~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 80 KVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred EEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 99998755 322 2333333332 4588888885
No 186
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.39 E-value=3.3e-07 Score=89.92 Aligned_cols=117 Identities=18% Similarity=0.303 Sum_probs=93.5
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhC-CCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC-Cccceeeeccc
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALID-FPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~-~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
+.+ | -.|||+|||.|.+-++|.+ ++| ...+++.++..+..+.+||+-=+.+|.-+.+..|| .+||.|-.++.
T Consensus 11 I~p-g--srVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 11 IEP-G--SRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred cCC-C--CEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 555 3 5799999999999999987 566 67888888889999999999544448889999999 99999999888
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEE------------------------------cChH----HHHHHHHHHHhC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFR------------------------------DDVD----ELVKVKRIIDAL 587 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~------------------------------d~~~----~~~~~~~~~~~l 587 (626)
+.+..+ .+.+|.||-|| |...|++ |+.. .+...+.+.+.+
T Consensus 85 LQ~~~~---P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 85 LQAVRR---PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred HHhHhH---HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC
Confidence 887763 57899999766 6688887 2222 367777788888
Q ss_pred CCeeE
Q 006905 588 KWQSQ 592 (626)
Q Consensus 588 ~w~~~ 592 (626)
..++.
T Consensus 159 ~i~I~ 163 (193)
T PF07021_consen 159 GIRIE 163 (193)
T ss_pred CCEEE
Confidence 77765
No 187
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.39 E-value=6.2e-07 Score=90.23 Aligned_cols=118 Identities=19% Similarity=0.309 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcC------CCeEE
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR------NIITMSFAPRDTHEAQVQFALERG------VPALI 261 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~------~V~avdis~~dls~a~i~~A~erg------~~~~~ 261 (626)
..-..+.+.++++.......+||+||||.|....-+.+- .+.++|++|. ++++.+++. ..+.+
T Consensus 54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~-----Ai~~vk~~~~~~e~~~~afv 128 (264)
T KOG2361|consen 54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR-----AIELVKKSSGYDESRVEAFV 128 (264)
T ss_pred hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChH-----HHHHHHhccccchhhhcccc
Confidence 343445667777655444448999999999777666653 4778888774 344443331 11222
Q ss_pred EEccccc--CCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCC
Q 006905 262 GVLAAER--LPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 262 ~v~d~~~--Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
..++... -|...+++|+|++.++|...+.+. ..++.++.++|||||.+++.....
T Consensus 129 ~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 129 WDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred eeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 2222222 346688999999999886655443 789999999999999999986543
No 188
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.39 E-value=2.1e-06 Score=87.41 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=70.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
..++|||||+|.|.++..++++ .+++.|+ +..++.+.+ ...+.+..+|.. -++|. +|+++..++||
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 3568999999999999999886 4556665 233444444 456778878865 56665 99999999999
Q ss_pred cccccH-HHHHHHHHhcccCC--eEEEEEe
Q 006905 287 PWNQFG-GIYLIEVDRVLRPG--GYWILSG 313 (626)
Q Consensus 287 h~~~~~-~~~L~Ei~RvLKPG--G~lvis~ 313 (626)
+|.++. ..+|+++.+.|+|| |.++|..
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 998766 78999999999999 9999975
No 189
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.38 E-value=9.1e-07 Score=92.17 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHc------CCCeEEEEcc------cccCCCCCCC
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALER------GVPALIGVLA------AERLPYPSRA 275 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~er------g~~~~~~v~d------~~~Lpf~d~s 275 (626)
.+..+||+|||-|.-+....+. .++++||+...+.+++.+.-.-+ -.++.+..+| ...+++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 3557999999998665555444 67888887766665554432211 1246666666 2345667777
Q ss_pred eeEEEeccccccccccH---HHHHHHHHhcccCCeEEEEEeC
Q 006905 276 FDMAHCSRCLIPWNQFG---GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 276 FDlV~~~~~l~h~~~~~---~~~L~Ei~RvLKPGG~lvis~p 314 (626)
||+|-|-+|+|.-.... ..+|+++.+.|||||+||-+.|
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 99999999995433322 5789999999999999999877
No 190
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.36 E-value=6.9e-07 Score=90.28 Aligned_cols=98 Identities=15% Similarity=0.260 Sum_probs=74.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceec-cccccCCCCCCccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYT-NWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~-~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
-..|||+|||.|.++..|++.+. +++.+|.+++++..+.++ ++ +.+.+ ++.+.....+.+||+|++..+|.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 45699999999999999988764 789999988888877765 32 22222 22221112238999999998888
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.. +...+|.++.|+|+|||.+++...
T Consensus 126 ~~~---~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 126 HVP---DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ccC---CHHHHHHHHHHHcCCCcEEEEEec
Confidence 776 457899999999999999999854
No 191
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.36 E-value=1.6e-06 Score=87.12 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=72.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------cceeccccccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------VGTYTNWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------i~~~~~~~e~~~~yp~t~Dlih~~~~f 542 (626)
..+|||+|||.|.++..|++.+. .|+.+|.+++++..+.++-- +...+ ..+...+.+||+|.+..+|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~---~d~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEV---GDLESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEE---cCchhccCCcCEEEEcchh
Confidence 56899999999999999998875 58999999999998877621 22222 2343334899999999998
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.++... .+..++.++.|++++++.+.+..
T Consensus 138 ~~~~~~-~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 138 IHYPQE-DAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred hcCCHH-HHHHHHHHHHhhcCCeEEEEECC
Confidence 776542 56789999999887666555443
No 192
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.35 E-value=4.5e-07 Score=91.22 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=72.9
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHH-Hhcccce--------------eccccccCCCCC----C
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIY-ERGLVGT--------------YTNWCEAMSTYP----R 531 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~-~rgli~~--------------~~~~~e~~~~yp----~ 531 (626)
.+|||+|||.|.-|.+|+++|. +|+++|.++..++.++ +.|+-.. +.-++..+..++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 5899999999999999999987 8999999988888753 3444211 112455565554 5
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
+||+|....+|.+.. ....+.++..|.|+|||||++++
T Consensus 113 ~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 799998878777664 33557799999999999997444
No 193
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.33 E-value=6.1e-07 Score=90.29 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=79.5
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceecccc--------ccCCCCCCccceeeec
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWC--------EAMSTYPRTYDLIHAD 539 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~--------e~~~~yp~t~Dlih~~ 539 (626)
..-|.++|+|||.|--+..+++..- +|+++|.++.||+++...--+ +||+=- +.+.--++|.|||-|.
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~-~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPV-TYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCc-ccccCCccccccccccccCCCcceeeehhh
Confidence 3456999999999944444555543 899999999999977665443 333221 2222236999999997
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCc-EEEE---EcChHHHHHHHHHHHhCCCe
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEG-GVIF---RDDVDELVKVKRIIDALKWQ 590 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG-~~i~---~d~~~~~~~~~~~~~~l~w~ 590 (626)
+.|+ -|+++..+.++.|||||.| .+.+ +|..-...++..+..++.|+
T Consensus 108 qa~H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QAVH----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhHH----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 7764 4899999999999999988 3332 55444455555666666664
No 194
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.33 E-value=1e-06 Score=86.94 Aligned_cols=88 Identities=22% Similarity=0.277 Sum_probs=66.4
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC-CccceeeeccccccCCCCCC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP-RTYDLIHADSVFSLYKDRCE 550 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~ 550 (626)
+|||+|||.|.++.+|++..- .+++.+|.++.++..+.++++--...+..+.+..++ ++||+|.++.+|.+.. +
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~---d 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR---N 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---C
Confidence 799999999999999976521 256788999899999988875222223333333455 8999999999998876 4
Q ss_pred HHHHHHHhhhhccC
Q 006905 551 TEDILLEMDRILRP 564 (626)
Q Consensus 551 ~~~~l~E~dRiLRP 564 (626)
...+|.||.|++++
T Consensus 91 ~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 91 PEEILDEMLRVGRH 104 (194)
T ss_pred HHHHHHHHHHhCCe
Confidence 68899999887765
No 195
>PRK04457 spermidine synthase; Provisional
Probab=98.32 E-value=4.5e-06 Score=86.64 Aligned_cols=116 Identities=12% Similarity=0.159 Sum_probs=71.3
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEccccc-C
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER-GVPALIGVLAAER-L 269 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er-g~~~~~~v~d~~~-L 269 (626)
.|.+.+...+... ...++|||||||+|.++..+++. .++++|+++..+..+...+.... ...+.+..+|... +
T Consensus 52 ~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l 130 (262)
T PRK04457 52 AYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI 130 (262)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence 4555554433322 23568999999999999888765 57888887744432222221111 1235566667433 2
Q ss_pred CCCCCCeeEEEecccc-ccccc--cHHHHHHHHHhcccCCeEEEEE
Q 006905 270 PYPSRAFDMAHCSRCL-IPWNQ--FGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l-~h~~~--~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.-..++||+|++...- ...+. ....+++++.++|+|||.+++.
T Consensus 131 ~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 131 AVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3224689999985311 01111 1268999999999999999995
No 196
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.32 E-value=2.4e-06 Score=88.38 Aligned_cols=136 Identities=20% Similarity=0.293 Sum_probs=89.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh---cc---cceec-cccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER---GL---VGTYT-NWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r---gl---i~~~~-~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++.+|+... -..+|+.+|.++.++..+.++ +. +.+++ |+ +...+ .+||+|.++--
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPP 184 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCC
Confidence 4579999999999999998763 123789999998899888775 22 22332 33 33344 79999988533
Q ss_pred cccCC-------------C-------C---CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEeecCC
Q 006905 542 FSLYK-------------D-------R---CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHED 598 (626)
Q Consensus 542 f~~~~-------------~-------~---c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~ 598 (626)
+.... . . -.+..++.++.++|+|||++++.-....-..++.++....+..... ..+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~-~~d 263 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVET-RKD 263 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEE-ecC
Confidence 22100 0 0 0134588889999999999999655455567888877766653222 122
Q ss_pred CCCCcceEEEEEe
Q 006905 599 GPLEREKLLFAVK 611 (626)
Q Consensus 599 ~~~~~e~~l~~~K 611 (626)
-.+.+++++++|
T Consensus 264 -~~~~~r~~~~~~ 275 (275)
T PRK09328 264 -LAGRDRVVLGRR 275 (275)
T ss_pred -CCCCceEEEEEC
Confidence 225678888765
No 197
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.32 E-value=4.5e-06 Score=92.41 Aligned_cols=113 Identities=9% Similarity=0.068 Sum_probs=73.7
Q ss_pred HHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEE--EEcccccCCC--C
Q 006905 201 IGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALI--GVLAAERLPY--P 272 (626)
Q Consensus 201 L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~--~v~d~~~Lpf--~ 272 (626)
+...+...+ +.+|||+|||+|..+..+++. .++++|+++..+.... +.+...|+.+.+ ..+|....++ +
T Consensus 230 ~~~~L~~~~--g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 230 VATWLAPQN--EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHhCCCC--CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEecccccccccccc
Confidence 444444333 458999999999988888764 6889999886555433 334445665333 4444444443 5
Q ss_pred CCCeeEEEec------cccccccc-----c----------HHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 273 SRAFDMAHCS------RCLIPWNQ-----F----------GGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 273 d~sFDlV~~~------~~l~h~~~-----~----------~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
+++||.|++. ..+.+.++ . +..+|.++.++|||||.+++++-..
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 6789999952 22222111 1 2578999999999999999986533
No 198
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=4.2e-06 Score=83.38 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=70.7
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcc-cccCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLA-AERLPYP 272 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d-~~~Lpf~ 272 (626)
....+.+++.+.++ .+|||||||+|..++.|++. .|++++..+. +.+.+.+.....|. ++.+.++| ..-+| +
T Consensus 60 ~vA~m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~-L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~ 135 (209)
T COG2518 60 MVARMLQLLELKPG--DRVLEIGTGSGYQAAVLARLVGRVVSIERIEE-LAEQARRNLETLGYENVTVRHGDGSKGWP-E 135 (209)
T ss_pred HHHHHHHHhCCCCC--CeEEEECCCchHHHHHHHHHhCeEEEEEEcHH-HHHHHHHHHHHcCCCceEEEECCcccCCC-C
Confidence 33456666666654 49999999999999999986 6777776552 22222222334455 45566666 33344 3
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...||.|+...+....+ ..+.+.|||||.+++-..
T Consensus 136 ~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEEc
Confidence 47899999988763332 335677999999999643
No 199
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.31 E-value=2.1e-06 Score=85.33 Aligned_cols=98 Identities=24% Similarity=0.356 Sum_probs=68.4
Q ss_pred EEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEccccc-CC--CCCCCeeEEEecccc
Q 006905 214 TAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAER-LP--YPSRAFDMAHCSRCL 285 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~-Lp--f~d~sFDlV~~~~~l 285 (626)
.+||||||.|.+...++.. +++++|+...-+..+. +.+...++. +.+..+|+.. ++ ++++++|.|+.++.=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~-~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL-RKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH-HHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH-HHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 8999999999999999886 7889999775554443 344444554 5566666555 33 567999999987743
Q ss_pred ccccccH--------HHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFG--------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~--------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|+... ..+|.++.++|+|||.|.+.+
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 665422 489999999999999999974
No 200
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.31 E-value=2.2e-06 Score=77.01 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=65.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp~t~Dlih~~~~f 542 (626)
-.+|||+|||.|.++.++++.. .-.+|+.+|.++.+++.+.++ ++ +.+.. +.-+.+...+.+||.|.+....
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 3589999999999999998761 114789999998888876432 33 12221 1111111224789999885432
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
. .++.++.++.|+|+|||++++.
T Consensus 99 ~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 G------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred h------hHHHHHHHHHHHcCCCCEEEEE
Confidence 2 3468999999999999999985
No 201
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.30 E-value=1.5e-06 Score=86.17 Aligned_cols=146 Identities=16% Similarity=0.252 Sum_probs=110.2
Q ss_pred HhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc-----cceeccccccCCCCC-C
Q 006905 459 TMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL-----VGTYTNWCEAMSTYP-R 531 (626)
Q Consensus 459 ~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~~e~~~~yp-~ 531 (626)
.++..+.. ...++|.|+|||.|.-.+.|+.+ |. --|+++|.|.+||.-+.+|+. .|-++.|| | .
T Consensus 21 dLla~Vp~-~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~------p~~ 91 (257)
T COG4106 21 DLLARVPL-ERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK------PEQ 91 (257)
T ss_pred HHHhhCCc-cccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcC------CCC
Confidence 45555655 77999999999999999999887 22 248999999999999999987 46677777 6 8
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE--cChH--HHHHHHHHHHhCCCeeEEeecC--CCC-----
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR--DDVD--ELVKVKRIIDALKWQSQIVDHE--DGP----- 600 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~--d~~~--~~~~~~~~~~~l~w~~~~~~~e--~~~----- 600 (626)
..|||.++-+|.-+.+. ..+|.-.=--|.|||.+.+. |+.+ ...-|.+.+++.-|...+-+.- -.+
T Consensus 92 ~~dllfaNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a 168 (257)
T COG4106 92 PTDLLFANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPA 168 (257)
T ss_pred ccchhhhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHH
Confidence 89999999999977754 66777777789999999997 3332 4778888898888887653311 001
Q ss_pred -------CCcceEEEEEecccCC
Q 006905 601 -------LEREKLLFAVKLYWTA 616 (626)
Q Consensus 601 -------~~~e~~l~~~K~~w~~ 616 (626)
-...+|=|+.+.|-..
T Consensus 169 ~Yy~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 169 AYYELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred HHHHHhCcccceeeeeeeecccc
Confidence 0135677777777654
No 202
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.30 E-value=4.2e-06 Score=92.87 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC----CCCCCeeEEE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP----YPSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp----f~d~sFDlV~ 280 (626)
++.+|||+|||+|..+..+++. .++++|+++..+...+ +.+...|+. +.+...|+..++ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ-ENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH-HHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 3558999999999998888764 4888898776554433 334445653 566667776665 4467899999
Q ss_pred ec------cccccccc---------------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 281 CS------RCLIPWNQ---------------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 281 ~~------~~l~h~~~---------------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+. .++.+-++ .+..+|.++.++|||||+++.++-
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 62 12211111 025789999999999999999864
No 203
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.30 E-value=7.5e-06 Score=80.88 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=72.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp~t~Dlih~~~~f 542 (626)
-.+|||+|||+|.++..++... -...|+.+|.++.++..+.++ |+ +.+++ |..+.+...+..+|.++...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 4579999999999998886431 012688999988898877653 43 22332 11111222223456665421
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCC
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKW 589 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w 589 (626)
...++.++.++.|+|+|||++++.... +.+..+.+.++.+.+
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 235789999999999999999997543 345556666666543
No 204
>PRK14967 putative methyltransferase; Provisional
Probab=98.30 E-value=2.3e-06 Score=86.40 Aligned_cols=119 Identities=14% Similarity=0.278 Sum_probs=78.8
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceec-cccccCCCCC-Cccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYT-NWCEAMSTYP-RTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~-~~~e~~~~yp-~t~Dlih~~~~f~ 543 (626)
..|||+|||.|.++..++..+. -+|+.+|.++.++..+.++ |+ +-+++ |+.+ ..+ .+||+|.++--|.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEECCCCC
Confidence 5799999999999999988753 3788999998888876653 33 22222 3322 234 7999999975433
Q ss_pred cCCC------------------CCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCeeEEe
Q 006905 544 LYKD------------------RCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 544 ~~~~------------------~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~ 594 (626)
.... ...++.++.++.|+|||||.+++... ......+.+.+++-.|+....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 2110 11256688899999999999998422 223445555566666665544
No 205
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.30 E-value=3.2e-06 Score=85.96 Aligned_cols=119 Identities=20% Similarity=0.285 Sum_probs=83.3
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC-Cccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP-RTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp-~t~Dlih~~~~f~ 543 (626)
.+|||+|||.|.++.++++..- ..+++.+|.++.++..+.++ |+ +.+++ +..+..++ .+||+|.++--|.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQ--SDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE--CchhccCcCCceeEEEECCCCC
Confidence 4799999999999999987611 12788999988888877654 33 22233 12223455 8999999865444
Q ss_pred cCC------CCC-----------------CHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE
Q 006905 544 LYK------DRC-----------------ETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 544 ~~~------~~c-----------------~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
... ... ....++.++.|+|+|||.+++.........+++++++..++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 211 000 0235788999999999999998766667788888888777644
No 206
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.30 E-value=2.1e-06 Score=93.24 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=80.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-..+||+|||.|.|...|+.+. --.|++++|.+..++..+.++ |+ +-+++ |.-+-+..+| .++|.|++..-
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4579999999999999999762 123899999998887766544 44 22233 2222223456 89999998522
Q ss_pred cccCCCC---CCHHHHHHHhhhhccCCcEEEE-EcChHHHHHHHHHHHhC-CCee
Q 006905 542 FSLYKDR---CETEDILLEMDRILRPEGGVIF-RDDVDELVKVKRIIDAL-KWQS 591 (626)
Q Consensus 542 f~~~~~~---c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~~~~~~~~l-~w~~ 591 (626)
....+.+ =..+.+|.|+.|+|+|||.+.+ +|..+....+.+.+... +++.
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 2211211 1226799999999999999988 57777666666655444 4444
No 207
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.29 E-value=2.8e-06 Score=94.54 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEec--
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCS-- 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~-- 282 (626)
++.+|||+|||+|..+..+++. .++++|+++..+.... +.+...|+. +.+...|+..++ ++++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 3568999999999888777652 5889999886665433 344455654 456667766655 45789999952
Q ss_pred --cc--cc-----cccc----------cHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 283 --RC--LI-----PWNQ----------FGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 283 --~~--l~-----h~~~----------~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
.. +. .|.. .+..+|.++.++|||||++++++-.
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 11 10 1111 1236899999999999999998643
No 208
>PHA03411 putative methyltransferase; Provisional
Probab=98.28 E-value=4.9e-06 Score=86.33 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
..+|||+|||+|.++..++.+ .++++|+++ .+++.++++...+.+...|...+. .+.+||+|+++..+++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp-----~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP-----EFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGK 138 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccc
Confidence 458999999999998887663 577887765 455566555445667777776654 3468999999998866
Q ss_pred cccc-------------------HHHHHHHHHhcccCCeEEEEE
Q 006905 288 WNQF-------------------GGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 288 ~~~~-------------------~~~~L~Ei~RvLKPGG~lvis 312 (626)
.... ...++..+.++|+|+|.+.+.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 4321 135667888999999977775
No 209
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.27 E-value=1.8e-06 Score=89.61 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=70.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEecc-
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSR- 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~- 283 (626)
++.+|||+|||+|..+..+++. .|+++|+++..+..... .+...++. +.+...|...++...+.||.|++..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~-n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIA-NINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH-HHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 3558999999999999887763 58888887765544333 33344543 4556666666665556799999622
Q ss_pred -----cccc-------ccc--------cHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 284 -----CLIP-------WNQ--------FGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 284 -----~l~h-------~~~--------~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
++.+ |.. ....+|.++.++|||||+++.++-.
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1100 111 1235899999999999999998643
No 210
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.27 E-value=3.8e-06 Score=84.22 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=61.0
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec-cccccCC-------CCC-Cccceeeeccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT-NWCEAMS-------TYP-RTYDLIHADSV 541 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~~e~~~-------~yp-~t~Dlih~~~~ 541 (626)
.+|||+|||+|+++..+++..--.-.|+.+|.++ +.++ .++ -+++ |.. ... .++ .+||+|.|+..
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~---~~v-~~i~~D~~-~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI---VGV-DFLQGDFR-DELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC---CCc-EEEecCCC-ChHHHHHHHHHhCCCCCCEEecCCC
Confidence 4799999999999998877621112578888773 3221 222 2222 221 111 133 78999999765
Q ss_pred cccCCCCC-C-------HHHHHHHhhhhccCCcEEEEE
Q 006905 542 FSLYKDRC-E-------TEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 542 f~~~~~~c-~-------~~~~l~E~dRiLRPgG~~i~~ 571 (626)
........ + .+.+|.|+.|+|||||.|++.
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 44332211 1 256899999999999999995
No 211
>PHA03412 putative methyltransferase; Provisional
Probab=98.25 E-value=5.5e-06 Score=84.19 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=63.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-------NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-------~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
..+|||+|||+|.++..++++ .++++|+++ .+++.|+++...+.+...|....++ +++||+|+++.-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~-----~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH-----TYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH-----HHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 458999999999999877653 577777755 4555665554456677777765554 568999999886
Q ss_pred cccccc----------c-HHHHHHHHHhcccCCeEEEE
Q 006905 285 LIPWNQ----------F-GGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 285 l~h~~~----------~-~~~~L~Ei~RvLKPGG~lvi 311 (626)
+..... . ...++..+.|++++|+. |+
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 642210 0 13578888887777775 55
No 212
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.25 E-value=6.2e-06 Score=81.32 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhh-hh----cCCCCCceeEEeccCchhhHhhhhhC-CCeEEEEeccCccCcccHHHHHHhcc------
Q 006905 448 ELWKKRLSYYKTMN-NQ----LGQSGRYRNILDMNAHLGGFAAALID-FPVWVMNVVPAEAKINTLGVIYERGL------ 515 (626)
Q Consensus 448 ~~w~~~v~~y~~~~-~~----~~~~~~~r~vlD~g~g~G~faa~l~~-~~v~~mnv~~~~~~~~~l~~~~~rgl------ 515 (626)
..+...++.|+.-+ .. ++. ..--.||.+|||+|.-=-++-. .+. +|+.+|.+++|-+++-.+--
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~gk-~~K~~vLEvgcGtG~Nfkfy~~~p~~---svt~lDpn~~mee~~~ks~~E~k~~~ 126 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLGK-SGKGDVLEVGCGTGANFKFYPWKPIN---SVTCLDPNEKMEEIADKSAAEKKPLQ 126 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcc-cCccceEEecccCCCCcccccCCCCc---eEEEeCCcHHHHHHHHHHHhhccCcc
Confidence 55566666676532 21 333 3344589999999964444432 333 78889999899988765543
Q ss_pred cc-eeccccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 516 VG-TYTNWCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 516 i~-~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
+. .+|.-.|.+...+ .+||.|.|..++..-+ +...+|.|+.|||||||.+|+-+..
T Consensus 127 ~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve---~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 127 VERFVVADGENLPQLADGSYDTVVCTLVLCSVE---DPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred eEEEEeechhcCcccccCCeeeEEEEEEEeccC---CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 22 4555567777777 9999999988887655 4588999999999999999998754
No 213
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.24 E-value=4.6e-06 Score=84.64 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=78.5
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccC-C--CCCCCeeEEEeccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERL-P--YPSRAFDMAHCSRC 284 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~L-p--f~d~sFDlV~~~~~ 284 (626)
..+||||||.|.+...+|++ +++++++...- -....+.+.+.++ ++.+...|+..+ + +++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~-v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPG-VAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHH-HHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 37999999999999999997 78999987743 3456667778888 777777775443 2 45669999999775
Q ss_pred cccccccH--------HHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWNQFG--------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~~~~--------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
= +|+... ..++..+.++|+|||.|.+.+
T Consensus 129 D-PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 D-PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred C-CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 4 776543 479999999999999999984
No 214
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.24 E-value=1.6e-06 Score=91.65 Aligned_cols=102 Identities=12% Similarity=0.220 Sum_probs=71.2
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcccceeccccccCC--CCCCccceeeeccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGLVGTYTNWCEAMS--TYPRTYDLIHADSV 541 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgli~~~~~~~e~~~--~yp~t~Dlih~~~~ 541 (626)
...+.|||+|||.|.++.+++++. -..+++.+|.+ .+++.+.+ .|+-+-++-.+.+|. .+| .+|+|...++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~ 224 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNLP-GAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRI 224 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEecH-HHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhh
Confidence 446799999999999999998762 11266777775 77776644 355322222223443 345 4799888787
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.++... ....+|.++.|+|||||.++|-|.
T Consensus 225 lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 225 LYSANEQ-LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhcCChH-HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 7766532 346799999999999999999864
No 215
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.24 E-value=5.2e-06 Score=86.98 Aligned_cols=136 Identities=19% Similarity=0.183 Sum_probs=91.8
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-Cccceeeecc-
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-RTYDLIHADS- 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-~t~Dlih~~~- 540 (626)
.+|||+|||+|.++.+|+... -..+|+.+|.++.++.++.+. |+ +.+++ ||.+. .+ ..||+|.++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---LAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---CcCCCccEEEECCC
Confidence 579999999999999998752 112789999998999888774 33 23333 55543 34 4899999861
Q ss_pred ------------ccccCCCC---------CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHH-hCCCeeEEeecCC
Q 006905 541 ------------VFSLYKDR---------CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIID-ALKWQSQIVDHED 598 (626)
Q Consensus 541 ------------~f~~~~~~---------c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~-~l~w~~~~~~~e~ 598 (626)
++.+.... -.+..++.+..++|+|||++++--..+.-..+++++. ...|....+ ..|
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~D 270 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GRD 270 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ecC
Confidence 11111110 0245689999999999999999777666677888776 466753221 233
Q ss_pred CCCCcceEEEEEec
Q 006905 599 GPLEREKLLFAVKL 612 (626)
Q Consensus 599 ~~~~~e~~l~~~K~ 612 (626)
-.+.++++++++.
T Consensus 271 -~~g~~R~~~~~~~ 283 (284)
T TIGR00536 271 -LNGKERVVLGFYH 283 (284)
T ss_pred -CCCCceEEEEEec
Confidence 3356888888753
No 216
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.24 E-value=6.7e-06 Score=91.18 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC-CCCCCeeEEEecc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP-YPSRAFDMAHCSR 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp-f~d~sFDlV~~~~ 283 (626)
++.+|||+|||+|..+.++++. .++++|+++..+.... +.+.+.|+. +.+...|...++ +.+++||.|++..
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 3558999999999888877763 5889999886665433 334455654 456677776665 4567899999621
Q ss_pred -c--ccccc------------------ccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 284 -C--LIPWN------------------QFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 284 -~--l~h~~------------------~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
| +..+. ..+..+|.++.++|||||.+++++-.
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1 10111 01246789999999999999998643
No 217
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.23 E-value=4.7e-06 Score=85.90 Aligned_cols=127 Identities=12% Similarity=0.117 Sum_probs=89.1
Q ss_pred eeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc---cceec-cccccCCC-CCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL---VGTYT-NWCEAMST-YPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl---i~~~~-~~~e~~~~-yp~t~Dlih~~~~f~~ 544 (626)
.+|||+|||+|.++..|++. +- .+|+.+|.++.+++.+.+.-- +.+++ |+.+.+.. +...||+|-++-=+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 47999999999999998754 21 268889999899987765421 12332 44333221 2357999998753321
Q ss_pred C-------------CCCCC----------HHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEeecCCC
Q 006905 545 Y-------------KDRCE----------TEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDG 599 (626)
Q Consensus 545 ~-------------~~~c~----------~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~~ 599 (626)
. ..+.. +..++..+.++|+|||.+++--..+....+..++....|+..+..|++-
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 0 00111 3468888899999999999976666778899999999999999888865
No 218
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.23 E-value=4.5e-06 Score=87.58 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=81.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-~t~Dlih~~~ 540 (626)
..+|||+|||+|.++.+|++..- -.+|+.+|.++.++..+.++ |+ +.+++ |+ +..+| .+||+|.++-
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FAALPGRKYDLIVSNP 197 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccCCCCccEEEECC
Confidence 35799999999999999987521 12789999999999888765 44 33333 22 23445 6899999862
Q ss_pred ccc-------------cCC--------CC-CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEee
Q 006905 541 VFS-------------LYK--------DR-CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 541 ~f~-------------~~~--------~~-c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~ 595 (626)
=+. +.. +. -.+..++.++.++|+|||++++--..+. ..+++++....|.-.-++
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~ 273 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFE 273 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeec
Confidence 111 000 00 0125688999999999999998654433 688888876655544444
No 219
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.22 E-value=1.3e-06 Score=89.06 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=79.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cc----eeccccccCCCCCCccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VG----TYTNWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~----~~~~~~e~~~~yp~t~Dlih~~~ 540 (626)
-++|||+|||.|-....|+..+. +|+++|.+..++++|-+.-- .+ .+---|+.....-..||.|.|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 47799999999999999999997 89999999999999988732 11 01111344444445699999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
++.|.. +.+.++.-+-+.|+|||.++|++-
T Consensus 167 vleHV~---dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 167 VLEHVK---DPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHh---CHHHHHHHHHHHhCCCCceEeeeh
Confidence 999988 558899999999999999999854
No 220
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=1.6e-05 Score=83.40 Aligned_cols=98 Identities=21% Similarity=0.239 Sum_probs=66.0
Q ss_pred EEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 214 TAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
+|||+|||+|..+..++.. .|+++|+++..+. .+.+.+...++ ...+...| -+.--.+.||+|+||.-.++-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~-~A~~Na~~~~l~~~~~~~~d--lf~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALA-LARENAERNGLVRVLVVQSD--LFEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHH-HHHHHHHHcCCccEEEEeee--cccccCCceeEEEeCCCCCCC
Confidence 7999999999999999886 6889999885443 33344555564 22233222 122113489999998765443
Q ss_pred c----------ccH--------------HHHHHHHHhcccCCeEEEEEeC
Q 006905 289 N----------QFG--------------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~----------~~~--------------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. .++ ..++.++.+.|+|||.+++...
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 2 011 2678889999999999999753
No 221
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.21 E-value=2.3e-06 Score=85.96 Aligned_cols=91 Identities=19% Similarity=0.137 Sum_probs=63.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC--Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP--RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp--~t~Dlih~~~~ 541 (626)
-.+|||+|||+|.+++.|++.---.-.|+.+|.++++++.+.++ |+ +.+.+ +..+..++ ..||+|++...
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~--gd~~~~~~~~~~fD~I~~~~~ 154 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV--GDGTLGYEENAPYDRIYVTAA 154 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE--CCcccCCCcCCCcCEEEECCC
Confidence 46899999999999988875410012578888888899887765 33 22333 22333344 78999998543
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+ +.+..++.+.|||||.+++-
T Consensus 155 ~---------~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 155 G---------PDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred c---------ccchHHHHHhhCCCcEEEEE
Confidence 3 34455777899999999985
No 222
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.21 E-value=7.8e-06 Score=85.09 Aligned_cols=102 Identities=10% Similarity=0.084 Sum_probs=65.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC----CCeEEEEccccc-CCCCCCCeeEEEe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERG----VPALIGVLAAER-LPYPSRAFDMAHC 281 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg----~~~~~~v~d~~~-Lpf~d~sFDlV~~ 281 (626)
..++||+||||+|.++..+++. .++++|+++..+..+...+....+ ..+.+...|... +....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3559999999999999888765 478888877444433322211111 224444445322 2223568999998
Q ss_pred cccccccccc----HHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQF----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~~----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.... +.... ...+++.+.++|+|||.+++..
T Consensus 152 D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 6542 22211 2578899999999999999874
No 223
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.19 E-value=2.1e-06 Score=86.76 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=73.7
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHH-HHhcccce--------------eccccccCCCCC----C
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVI-YERGLVGT--------------YTNWCEAMSTYP----R 531 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~-~~rgli~~--------------~~~~~e~~~~yp----~ 531 (626)
.+|||.|||.|.-+.+|+++|. +|+++|.++..++.+ .++|+... ++-++..+..++ .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 4799999999999999999998 899999998888864 46666321 122445555542 5
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
+||+|....+|.+... ...+.++..|.++|+|||++++
T Consensus 116 ~fd~v~D~~~~~~l~~-~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPE-EMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCH-HHHHHHHHHHHHHcCCCCeEEE
Confidence 8999998888887643 3557899999999999996444
No 224
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.18 E-value=7e-06 Score=91.35 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC--CCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP--YPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp--f~d~sFDlV~~~~ 283 (626)
+.+|||+|||+|..+..+++. .++++|+++..+.... +.+...|+. +.+...|...++ ++ ++||+|++..
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~ 328 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDA 328 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcC
Confidence 458999999999999888764 5888988775554333 334445553 566667765543 33 7899999743
Q ss_pred ccc------c-----cccc----------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLI------P-----WNQF----------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~------h-----~~~~----------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
... + |... ...+|.++.++|||||.+++++-
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 210 0 1100 13579999999999999998754
No 225
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.17 E-value=4.2e-06 Score=70.68 Aligned_cols=96 Identities=22% Similarity=0.295 Sum_probs=68.4
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH---hcc---cceeccccccCCC-CCCccceeeecccccc
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE---RGL---VGTYTNWCEAMST-YPRTYDLIHADSVFSL 544 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~---rgl---i~~~~~~~e~~~~-yp~t~Dlih~~~~f~~ 544 (626)
+|+|+|||.|+++..+++.+ ..++..+|.+++.+..+.+ .+. +..++.-...+.. -+..||+|.+...+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 48999999999999998832 2477888888777666651 121 2333321222222 2488999999888887
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
. .-....++..+.++|||||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 125578999999999999999987
No 226
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.17 E-value=1.2e-05 Score=89.49 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=74.6
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc----C
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER----L 269 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~----L 269 (626)
..+.+.+.+... ++.+|||+|||+|.++..|++. .++++|+++.++..+.. .+...++ ++.+..+|+.. +
T Consensus 285 l~~~vl~~l~~~--~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 285 MVARALEWLDPQ--PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHHhcCC--CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhhhhh
Confidence 334444444333 3458999999999999999886 68888888766654443 3334454 46677777543 3
Q ss_pred CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
++.+++||+|+++... .. ....+..+.+ ++|++.++++..|.
T Consensus 362 ~~~~~~fD~Vi~dPPr---~g-~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 362 PWALGGFDKVLLDPPR---AG-AAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred hhhcCCCCEEEECcCC---cC-hHHHHHHHHh-cCCCeEEEEEeChH
Confidence 4556789999997743 22 2345555555 69999999997644
No 227
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.16 E-value=7.2e-06 Score=87.00 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=76.1
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-Cccceeeeccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
.+|||+|||+|.++.+|+... -..+|+.+|.++.++..+.++ |+ +.+++ |+. ...| .+||+|.++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~---~~l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLF---AALPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchh---hhCCCCCccEEEECCC
Confidence 579999999999999998752 123789999999999987765 43 33443 332 3345 68999998621
Q ss_pred c-------------ccCCCC---------CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCC
Q 006905 542 F-------------SLYKDR---------CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALK 588 (626)
Q Consensus 542 f-------------~~~~~~---------c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~ 588 (626)
+ .+.... -.+..++.++.++|+|||.+++--..+ ...+.+++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~ 278 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVP 278 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCC
Confidence 1 111100 013468999999999999999954333 345777766543
No 228
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.16 E-value=4.2e-05 Score=74.86 Aligned_cols=99 Identities=17% Similarity=0.044 Sum_probs=68.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCe-EEEEcccc-cCCCCCCCeeEEEe
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPA-LIGVLAAE-RLPYPSRAFDMAHC 281 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~-~~~v~d~~-~Lpf~d~sFDlV~~ 281 (626)
...++..++|||||+|+.+..++.. .++++|-++..+.... +.+++.|++. .+..+++. .|+-.+ +||.|+.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFI 108 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFI 108 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEE
Confidence 4444559999999999999998832 6888887664333222 3344445553 44444433 333222 7999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.... ....+|..+...|||||.+++..
T Consensus 109 GGg~-----~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 109 GGGG-----NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCC-----CHHHHHHHHHHHcCcCCeEEEEe
Confidence 7752 35789999999999999999974
No 229
>PRK01581 speE spermidine synthase; Validated
Probab=98.16 E-value=1.1e-05 Score=86.69 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=72.3
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH------------cCCCeE
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE------------RGVPAL 260 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e------------rg~~~~ 260 (626)
|.+.|....-......++||+||||+|..+..+++. .++++|+++ .+++.|++ ....+.
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp-----eVIelAr~~~~L~~~~~~~~~DpRV~ 210 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG-----SMINMARNVPELVSLNKSAFFDNRVN 210 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHHHhccccchhccccCCCCceE
Confidence 444454433223344569999999999988888875 577888766 44445543 123456
Q ss_pred EEEccccc-CCCCCCCeeEEEecccccccc---cc--HHHHHHHHHhcccCCeEEEEEe
Q 006905 261 IGVLAAER-LPYPSRAFDMAHCSRCLIPWN---QF--GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 261 ~~v~d~~~-Lpf~d~sFDlV~~~~~l~h~~---~~--~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.+.|+.. +.-..+.||+|++...- +.. .. ...++..+.+.|+|||.|++..
T Consensus 211 vvi~Da~~fL~~~~~~YDVIIvDl~D-P~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 211 VHVCDAKEFLSSPSSLYDVIIIDFPD-PATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEECcHHHHHHhcCCCccEEEEcCCC-ccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 66667444 44445789999986421 211 11 1568999999999999998864
No 230
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=1.1e-05 Score=84.41 Aligned_cols=159 Identities=21% Similarity=0.262 Sum_probs=104.1
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccce
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGT 518 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~ 518 (626)
...||+.+...+. .. +..... +|||+|||+|-.|.+|+...- ..+|+.+|.++..|.+|.+. |+..+
T Consensus 92 Pr~dTe~Lve~~l---~~---~~~~~~--~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~ 162 (280)
T COG2890 92 PRPDTELLVEAAL---AL---LLQLDK--RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRV 162 (280)
T ss_pred cCCchHHHHHHHH---Hh---hhhcCC--cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccE
Confidence 4567777777765 11 112022 899999999999999988732 24899999999888877544 43221
Q ss_pred eccccccCCCCCCccceeeeccccccC-------------------CCCC---CHHHHHHHhhhhccCCcEEEEEcChHH
Q 006905 519 YTNWCEAMSTYPRTYDLIHADSVFSLY-------------------KDRC---ETEDILLEMDRILRPEGGVIFRDDVDE 576 (626)
Q Consensus 519 ~~~~~e~~~~yp~t~Dlih~~~~f~~~-------------------~~~c---~~~~~l~E~dRiLRPgG~~i~~d~~~~ 576 (626)
+.--+.-|+..+..||+|.++==.--. .... -+..++.+..++|+|||++++.-..+.
T Consensus 163 ~~~~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 163 LVVQSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred EEEeeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence 211123455566799998875321100 0111 223588999999999999999888777
Q ss_pred HHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 577 LVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 577 ~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
...+++++....+ ...+.....-.+.+.+.++++
T Consensus 243 ~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 243 GEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred HHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 8899999999986 332333333335667766654
No 231
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=1.4e-05 Score=83.97 Aligned_cols=120 Identities=17% Similarity=0.212 Sum_probs=84.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec----cccccCCCCC--Cccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT----NWCEAMSTYP--RTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~----~~~e~~~~yp--~t~Dlih~~~~f~ 543 (626)
-+||||+|||+|-+|-+.++.|+ --|+++|..+-.++.+.|.-...-++ .-+-.....| +.||+|.|+-+=.
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~ 240 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE 240 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH
Confidence 68999999999999999999887 25899999988999888865533222 1111122344 5999999922100
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEEeecC
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e 597 (626)
-+..+.-++-|.|||||++|+|--. +..+.+.+.+.+-.|++.-+..+
T Consensus 241 ------vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 241 ------VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred ------HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 1124556778999999999999644 34677788887778877654443
No 232
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.15 E-value=1.3e-05 Score=87.85 Aligned_cols=136 Identities=12% Similarity=0.122 Sum_probs=91.7
Q ss_pred eEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc-cceec-cccccCCCCCCccceeeecccccc
Q 006905 472 NILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL-VGTYT-NWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~-~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
+|||+|||+|.++..|+.. +- .+|+.+|.++.+++.+.++ |+ +.+++ |+.+....-...||+|.|+-=+-.
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 7999999999999988754 22 3789999999999988765 22 33333 443321111257999999653321
Q ss_pred CCC-------------------CC---CHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEeecCCCCCC
Q 006905 545 YKD-------------------RC---ETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLE 602 (626)
Q Consensus 545 ~~~-------------------~c---~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~ 602 (626)
... .- .+..++.+..+.|+|||++++--..+....+++++....|....+. . .-.+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~-k-Dl~G 409 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETL-P-DLAG 409 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEE-E-cCCC
Confidence 000 00 1235777888999999999987666778899999988888653221 1 1225
Q ss_pred cceEEEEEe
Q 006905 603 REKLLFAVK 611 (626)
Q Consensus 603 ~e~~l~~~K 611 (626)
.++++++++
T Consensus 410 ~dR~v~~~~ 418 (423)
T PRK14966 410 LDRVTLGKY 418 (423)
T ss_pred CcEEEEEEE
Confidence 688998875
No 233
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.14 E-value=2.4e-05 Score=79.08 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=67.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHH-HHcCC----------------CeEEEEcccccCCCCC
Q 006905 211 SIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFA-LERGV----------------PALIGVLAAERLPYPS 273 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A-~erg~----------------~~~~~v~d~~~Lpf~d 273 (626)
...+||..|||.|.-...|++++..++.+ |+++.+++.+ .+++. .+.+.++|...++-..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGv---Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGV---DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEE---ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEE---ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 34589999999999999999996444444 4455566555 33332 2356677776665333
Q ss_pred -CCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 274 -RAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 274 -~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
++||+|+=..+++-.+.+. ..+.+.+.++|+|||.+++.
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 5799999766665555444 78999999999999995443
No 234
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.14 E-value=1.4e-05 Score=79.50 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=91.5
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccc--eeccccccCCCCCCccceeeeccc---c
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVG--TYTNWCEAMSTYPRTYDLIHADSV---F 542 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~--~~~~~~e~~~~yp~t~Dlih~~~~---f 542 (626)
+.-+-|||+|||+|--|+.|.+.+- -.+.+|.|+.||+++.+|-+-| ++.|..|.+++=|.|||-+-+... +
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 5678899999999999999988874 3578999999999999977765 333777888877899996554222 2
Q ss_pred ccCCCCCCHH-----HHHHHhhhhccCCcEEEEEc---ChHHHHHHHHHHHhCCCee-EEeecCCCCCCcceEEEE
Q 006905 543 SLYKDRCETE-----DILLEMDRILRPEGGVIFRD---DVDELVKVKRIIDALKWQS-QIVDHEDGPLEREKLLFA 609 (626)
Q Consensus 543 ~~~~~~c~~~-----~~l~E~dRiLRPgG~~i~~d---~~~~~~~~~~~~~~l~w~~-~~~~~e~~~~~~e~~l~~ 609 (626)
.+....|+.+ ..+.-+..+|++|+..++.= +.+.++.|...+..--..- .++|.-.+..++-..||.
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence 2322223333 24666889999999999973 3444444444333222111 244543333344445555
No 235
>PTZ00146 fibrillarin; Provisional
Probab=98.13 E-value=1.8e-05 Score=82.95 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=63.0
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcc----cHHHHHHh-cccceeccccccCCCC---CCccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKIN----TLGVIYER-GLVGTYTNWCEAMSTY---PRTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~----~l~~~~~r-gli~~~~~~~e~~~~y---p~t~Dlih~~~~f 542 (626)
.+|||+|||+|+++.+|++.---.-.|..+|.+++ ++.++.+| +++.+..|-+... .| ..++|+|-++...
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV~~Dva~ 212 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVIFADVAQ 212 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEEEEeCCC
Confidence 47999999999999999876100013666777754 55666554 4555555543221 12 2689999886531
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
. -....+++|+.|+|||||+|+|.
T Consensus 213 ---p--dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 213 ---P--DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ---c--chHHHHHHHHHHhccCCCEEEEE
Confidence 1 13345677999999999999994
No 236
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.13 E-value=5.3e-06 Score=87.35 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=84.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceecccc--ccCCCCC-CccceeeeccccccCCC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWC--EAMSTYP-RTYDLIHADSVFSLYKD 547 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~--e~~~~yp-~t~Dlih~~~~f~~~~~ 547 (626)
.+|||+|||+|-+|-+-++.|. -.|+++|..+..++.+.+.-...-+.+-+ ......+ ..||+|.|+-+..-
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~~~v--- 237 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANILADV--- 237 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES-HHH---
T ss_pred CEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECCCHHH---
Confidence 5899999999998877777776 25889999888888777765533222211 1223345 99999999444332
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEec
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
+..++-.+.+.|+|||++|+|--. +....|.+.++. .|+......+ +.-..|+++|+
T Consensus 238 ---L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ---LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp ---HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred ---HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 234666778999999999998433 345667777776 7776544433 34567888775
No 237
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.13 E-value=4e-05 Score=76.42 Aligned_cols=132 Identities=11% Similarity=0.039 Sum_probs=77.0
Q ss_pred cCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFAL 253 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~ 253 (626)
.|..+..|.+. .+....+...+.+...+... ..+.+|||+|||+|.++..++.+ .++++|.++.....+ .+.+.
T Consensus 21 ~g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~~-~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a-~~Nl~ 97 (199)
T PRK10909 21 RGRKLPVPDSP-GLRPTTDRVRETLFNWLAPV-IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQL-IKNLA 97 (199)
T ss_pred CCCEeCCCCCC-CcCcCCHHHHHHHHHHHhhh-cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHH-HHHHH
Confidence 34455554432 22344455555555555321 12458999999999999865443 688888877433322 23333
Q ss_pred HcCC-CeEEEEccccc-CCCCCCCeeEEEeccccccccccH-HHHHHHHHh--cccCCeEEEEEeC
Q 006905 254 ERGV-PALIGVLAAER-LPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDR--VLRPGGYWILSGP 314 (626)
Q Consensus 254 erg~-~~~~~v~d~~~-Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~R--vLKPGG~lvis~p 314 (626)
..++ .+.+...|... ++...++||+|+++..+ .... ..++..+.. +|+|+|.++++.+
T Consensus 98 ~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy---~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 98 TLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF---RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC---CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 3444 35566666433 33234579999998853 2222 344554444 4899999999854
No 238
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.12 E-value=3.4e-06 Score=84.63 Aligned_cols=90 Identities=20% Similarity=0.123 Sum_probs=62.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCC-CC--Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMST-YP--RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~-yp--~t~Dlih~~~ 540 (626)
-..|||+|||+|.+++.|++..--.-.|+.+|.++.+++.+.++ |+ +.+.+ .+... ++ ..||+|+++.
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~---~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIV---GDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEE---CCcccCCcccCCCCEEEEcC
Confidence 45799999999999999987521112478888888888877654 43 22333 22222 23 6899999843
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
. ...+..++-+.|+|||++++.
T Consensus 155 ~---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 155 A---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred C---------cccccHHHHHhcCcCcEEEEE
Confidence 2 244566788999999999984
No 239
>PLN02366 spermidine synthase
Probab=98.12 E-value=2.2e-05 Score=83.26 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=65.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEcccccC-C-CCCCCeeEEE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE----RGVPALIGVLAAERL-P-YPSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e----rg~~~~~~v~d~~~L-p-f~d~sFDlV~ 280 (626)
..++||+||||.|..+..+++. .++++|+++..+..+...+... ....+.+...|+... . .+++.||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 3678999999999999999876 4677788664333222222111 112356666664321 1 2356899999
Q ss_pred ecccccccccc----HHHHHHHHHhcccCCeEEEEEe
Q 006905 281 CSRCLIPWNQF----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 281 ~~~~l~h~~~~----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+...- ++... ...+++.+.++|+|||.++...
T Consensus 171 ~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 85432 32221 1468999999999999998753
No 240
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.11 E-value=4.6e-06 Score=83.24 Aligned_cols=93 Identities=18% Similarity=0.100 Sum_probs=61.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCCCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp~t~Dlih~~~~ 541 (626)
-..|||+|||+|.+++.|++.---.-.|+.+|.+++++..+.++ |+ +.+++ |..+.+. -..+||.|++...
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~ 151 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIVTAA 151 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEEccC
Confidence 35799999999999988875410001588899988888776543 43 22333 2222111 1279999999655
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+. .+..|+.|+|+|||.+++-.
T Consensus 152 ~~---------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 AS---------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cc---------hhhHHHHHhcCcCcEEEEEE
Confidence 43 34458889999999999853
No 241
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.10 E-value=4.6e-06 Score=88.18 Aligned_cols=99 Identities=13% Similarity=0.160 Sum_probs=68.5
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc---ccc-----eeccccccCCCCCCcc-----ceee
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG---LVG-----TYTNWCEAMSTYPRTY-----DLIH 537 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg---li~-----~~~~~~e~~~~yp~t~-----Dlih 537 (626)
.+|||+|||+|.++..|++...-..+|+++|.|+.||+.+.++- ..+ +..|.++. ..+|..+ .++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~-~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP-LALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch-hhhhcccccCCeEEEE
Confidence 57999999999999999877210237999999999999998862 111 12222222 1234333 3555
Q ss_pred eccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 538 ~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
++..|.+.. +-+...+|.++.++|+|||.++|.
T Consensus 144 ~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 556666654 234567999999999999999985
No 242
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.09 E-value=4e-06 Score=81.13 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=74.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-.+|||+|||+|-.+.+|+++.- ...|+.+|.+++.++.+.+. ++ +.++ ++.-+...+ ..||+|-++-=|
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~--~~d~~~~~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVV--QSDLFEALPDGKFDLIVSNPPF 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEE--ESSTTTTCCTTCEEEEEE---S
T ss_pred CCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccccccc--cccccccccccceeEEEEccch
Confidence 45699999999999999988732 12588889998888877553 22 2222 334444455 999999997554
Q ss_pred ccCCC--CCCHHHHHHHhhhhccCCcEEEE--EcChHHHHHHHHHHH
Q 006905 543 SLYKD--RCETEDILLEMDRILRPEGGVIF--RDDVDELVKVKRIID 585 (626)
Q Consensus 543 ~~~~~--~c~~~~~l~E~dRiLRPgG~~i~--~d~~~~~~~~~~~~~ 585 (626)
..... ...+..++.+..++|+|||.+++ +.....-..+++++.
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 43321 12356789999999999998854 444444444555554
No 243
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.07 E-value=2.2e-05 Score=80.41 Aligned_cols=118 Identities=16% Similarity=0.309 Sum_probs=91.4
Q ss_pred CceeEEeccCchhhHhhhhhCC-C-eEEEEeccCccCcccHHHHHHhc----c---cceeccccccCCCC----C-Cccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDF-P-VWVMNVVPAEAKINTLGVIYERG----L---VGTYTNWCEAMSTY----P-RTYD 534 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~-~-v~~mnv~~~~~~~~~l~~~~~rg----l---i~~~~~~~e~~~~y----p-~t~D 534 (626)
....|||+|||.|..+-.|+++ + + -|+.++.++.+.+.|.+-= + |.++| .++..| + .+||
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a---~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~---~Di~~~~~~~~~~~fD 117 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKA---KIVGVEIQEEAAEMAQRNVALNPLEERIQVIE---ADIKEFLKALVFASFD 117 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCC---cEEEEEeCHHHHHHHHHHHHhCcchhceeEeh---hhHHHhhhcccccccC
Confidence 3788999999999999999887 3 4 6788888866666554321 1 44555 233332 3 5799
Q ss_pred eeeeccccc---------------cCCCCCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE
Q 006905 535 LIHADSVFS---------------LYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 535 lih~~~~f~---------------~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
+|-|+==|- +++-.|++++++.=..++|||||++.+--+.+.+..+..++++++|..+
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 999976553 2334588999999999999999999999999999999999999999987
No 244
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.06 E-value=1.3e-05 Score=90.57 Aligned_cols=134 Identities=17% Similarity=0.306 Sum_probs=90.2
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-~t~Dlih~~ 539 (626)
..+|||+|||+|.++.+|+.. +- ..|+.+|.++.+++++.+. |+ +.+++ |+ +...+ +.||+|.|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FENIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hhhCcCCCccEEEEC
Confidence 357999999999999988754 22 3789999998999988876 43 22232 33 33344 689999985
Q ss_pred cccccC--------------------CCC---CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEeec
Q 006905 540 SVFSLY--------------------KDR---CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDH 596 (626)
Q Consensus 540 ~~f~~~--------------------~~~---c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~ 596 (626)
-=+-.. ... ..+..++.++.++|+|||.+++--..+.-.++.+++....|+...+ .
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~-~ 292 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESV-Y 292 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEE-E
Confidence 321110 001 1234578899999999999999766667778888888888875432 1
Q ss_pred CCCCCCcceEEEEE
Q 006905 597 EDGPLEREKLLFAV 610 (626)
Q Consensus 597 e~~~~~~e~~l~~~ 610 (626)
.|-. +.++++++.
T Consensus 293 ~D~~-g~~R~v~~~ 305 (506)
T PRK01544 293 KDLQ-GHSRVILIS 305 (506)
T ss_pred ecCC-CCceEEEec
Confidence 2222 457777664
No 245
>PRK04457 spermidine synthase; Provisional
Probab=98.04 E-value=2.5e-05 Score=81.09 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=85.1
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-cc------ceec-cccccCCCCCCccceeeecc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-LV------GTYT-NWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-li------~~~~-~~~e~~~~yp~t~Dlih~~~ 540 (626)
..++|||+|||.|.++.++++.. -.+.|+.+|..+.+++++.+.- +. .+.+ |.-+-+...|.+||+|-++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D- 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD- 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-
Confidence 46789999999999999987652 1246888888889999888762 21 2222 2222233456899999875
Q ss_pred ccccCC--CCCCHHHHHHHhhhhccCCcEEEEE---cChHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 541 VFSLYK--DRCETEDILLEMDRILRPEGGVIFR---DDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 541 ~f~~~~--~~c~~~~~l~E~dRiLRPgG~~i~~---d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
.|.... .......++.++.++|+|||.+++- ........++.+.+.+.-...++..+. ....|+++.|
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~---~~N~v~~a~~ 216 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAES---HGNVAVFAFK 216 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCC---CccEEEEEEC
Confidence 454221 1122368999999999999999982 222222223333333333333333321 1347888877
No 246
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.01 E-value=4e-05 Score=81.55 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCC-CCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPY-PSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf-~d~sFDlV~~~~~l~h 287 (626)
+.+|||+|||+|.++..|++. .|+++|+++..+..+. +.+...++. +.+..+|+..+.. ..+.||+|++....
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr-- 250 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR-- 250 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC--
Confidence 458999999999999999986 5888888876555433 334455653 6777788665432 34579999997642
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
.. ....+.++...++|++.++++..|.
T Consensus 251 -~G-~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 251 -RG-IGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred -CC-ccHHHHHHHHHcCCCeEEEEECCcc
Confidence 21 1223334445578999999987654
No 247
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.01 E-value=3.2e-05 Score=78.92 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=64.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc-CC-----CCCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER-LP-----YPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~-Lp-----f~d~sFDl 278 (626)
.++|||+|||+|.-+..|+.. .++++|+++.....+. +...+.++. +.+..+++.. ++ .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 458999999999766655542 6889999774443333 333444553 5566666433 22 12468999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+.... ......++.++.++|||||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 988532 2223678999999999999988863
No 248
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.00 E-value=2e-05 Score=82.68 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCc----hHHHHHhhC--------CcEEEeCCccchHHHHHHH-HHH--cC--------------------
Q 006905 212 IRTAIDTGCGVA----SWGAYLLSR--------NIITMSFAPRDTHEAQVQF-ALE--RG-------------------- 256 (626)
Q Consensus 212 ~~~VLDIGCGtG----~~a~~La~~--------~V~avdis~~dls~a~i~~-A~e--rg-------------------- 256 (626)
.-+|+..||++| +++..|.+. .|+++|++...+..+..-. ... ++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 358999999999 566655552 4777777664443322210 000 00
Q ss_pred --------CCeEEEEcccccCCCC-CCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 257 --------VPALIGVLAAERLPYP-SRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 257 --------~~~~~~v~d~~~Lpf~-d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
-.+.|...+....+++ .+.||+|+|.++++|+.... ..++..+.+.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0134555554444443 57899999999998886543 78999999999999998875
No 249
>PRK03612 spermidine synthase; Provisional
Probab=98.00 E-value=5.8e-05 Score=85.75 Aligned_cols=97 Identities=16% Similarity=0.113 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc------------CCCeEEEEccccc-CCCCC
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER------------GVPALIGVLAAER-LPYPS 273 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er------------g~~~~~~v~d~~~-Lpf~d 273 (626)
+.++|||||||+|..+..++++ .++++|+++. +++.++++ ...+.+...|... +...+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~-----vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPA-----MTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHH-----HHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC
Confidence 4568999999999999888775 5777777664 44454441 1235566666544 33335
Q ss_pred CCeeEEEecccccccccc-----HHHHHHHHHhcccCCeEEEEEe
Q 006905 274 RAFDMAHCSRCLIPWNQF-----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~-----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++||+|++.... +.... ...+++.+.+.|||||.+++..
T Consensus 372 ~~fDvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 372 EKFDVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 689999997543 32211 1468899999999999999864
No 250
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.99 E-value=1.6e-05 Score=81.52 Aligned_cols=92 Identities=24% Similarity=0.460 Sum_probs=73.0
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccc-eeccccccCCCCCCccceeeeccccccCCC
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVG-TYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~-~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
+..++||+|||-|+..+.|+.. .-+|..++.|..|...-.+||+-= ...+|-+. +..||+|-|-.|+ +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh----h
Confidence 5778999999999999999764 225788888989999999999821 11245432 4689999995554 6
Q ss_pred CCCHH-HHHHHhhhhccCCcEEEEE
Q 006905 548 RCETE-DILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 548 ~c~~~-~~l~E~dRiLRPgG~~i~~ 571 (626)
||+-+ .+|.+|.+.|+|+|.+|+.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 78866 5899999999999999996
No 251
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=9.7e-05 Score=75.42 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=70.6
Q ss_pred HHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCC
Q 006905 201 IGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPS 273 (626)
Q Consensus 201 L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d 273 (626)
|...+.+.+ +.+|||.|.|+|.++++|+.. .+++.++-.. ..+.+.+...+.++. +.+...|....-+++
T Consensus 86 I~~~~gi~p--g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d-~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 86 IVARLGISP--GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRED-FAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHcCCCC--CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHH-HHHHHHHHHHHhccccceEEEecccccccccc
Confidence 444444444 459999999999999999953 6777777552 222222222232432 455556655544444
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.||+|+. ..+ ++..++..+..+|+|||.+++-.|
T Consensus 163 -~vDav~L-----Dmp-~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 163 -DVDAVFL-----DLP-DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -ccCEEEE-----cCC-ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 8999987 333 368899999999999999999765
No 252
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.98 E-value=1.9e-05 Score=78.58 Aligned_cols=98 Identities=23% Similarity=0.338 Sum_probs=60.5
Q ss_pred CCCEEEEeCCCCc----hHHHHHhhC---------CcEEEeCCccchHHHHHHHHHHc--------C-------------
Q 006905 211 SIRTAIDTGCGVA----SWGAYLLSR---------NIITMSFAPRDTHEAQVQFALER--------G------------- 256 (626)
Q Consensus 211 ~~~~VLDIGCGtG----~~a~~La~~---------~V~avdis~~dls~a~i~~A~er--------g------------- 256 (626)
..-+|+..||++| +++..|.+. .+.++|+++ .+++.|++- +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~-----~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~ 105 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP-----SALEKARAGIYPERSLRGLPPAYLRRYFTER 105 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H-----HHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH-----HHHHHHHhCCCCHHHHhhhHHHHHHHhcccc
Confidence 4568999999999 666666661 466666644 445555420 1
Q ss_pred ------------CCeEEEEcccccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 257 ------------VPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 257 ------------~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
-.+.|...+....+.+.+.||+|+|.++++.+.... ..++..+.+.|+|||+|++..
T Consensus 106 ~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 106 DGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp -CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 125566666555333467899999999998887654 789999999999999999963
No 253
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.97 E-value=1.9e-05 Score=78.93 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=63.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC--Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP--RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp--~t~Dlih~~~~ 541 (626)
-.+|||+|||+|.+++.|++..- .|+.+|.+++++..+.++ |+ +.+.+. ..+..+| ..||+|.++..
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEccC
Confidence 46799999999999998877632 678888888888877664 33 333332 1233444 78999998543
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+ ..+..++.+.|+|||.+++.
T Consensus 154 ~---------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 154 A---------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred c---------hhhhHHHHHhcCCCcEEEEE
Confidence 3 34556778999999999985
No 254
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.97 E-value=3.7e-05 Score=77.64 Aligned_cols=97 Identities=22% Similarity=0.387 Sum_probs=62.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC---------CC-------------------
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERG---------VP------------------- 258 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg---------~~------------------- 258 (626)
....+|||||-.|.++..+++. .+.++||++.- ++.|++.- +.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~L-----I~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVL-----IQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHH-----HHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 3567999999999999888874 78999997643 34443221 00
Q ss_pred ------------eEE----EEcc-cccCCCCCCCeeEEEecc----ccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 259 ------------ALI----GVLA-AERLPYPSRAFDMAHCSR----CLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 259 ------------~~~----~v~d-~~~Lpf~d~sFDlV~~~~----~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
..+ .+++ .+-|.+....||+|.|-- +...|.++. ..+|..+.++|.|||+|++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000 0111 111223456799999822 112455544 68999999999999999997
No 255
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.96 E-value=4.1e-05 Score=77.92 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=57.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeE-EEEccccc-----CCCCCCCeeEEEe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPAL-IGVLAAER-----LPYPSRAFDMAHC 281 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~-~~v~d~~~-----Lpf~d~sFDlV~~ 281 (626)
.+.++||+|||+|.|+..|+++ .++++|+++.++.. .......+. +...+... ++..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~-----~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE-----KLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH-----HHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 3568999999999999999887 58888887754443 222222211 22222222 2212236787777
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
+.++ .|..+.+.|+| |.+++-.-|
T Consensus 150 S~~~---------~l~~i~~~l~~-~~~~~L~KP 173 (228)
T TIGR00478 150 SLIS---------ILPELDLLLNP-NDLTLLFKP 173 (228)
T ss_pred ehHh---------HHHHHHHHhCc-CeEEEEcCh
Confidence 6643 47889999999 887776533
No 256
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=0.00052 Score=71.97 Aligned_cols=129 Identities=16% Similarity=0.251 Sum_probs=82.8
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcccc--eeccccccCCCCCCccceeeeccccccC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGLVG--TYTNWCEAMSTYPRTYDLIHADSVFSLY 545 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgli~--~~~~~~e~~~~yp~t~Dlih~~~~f~~~ 545 (626)
+|||+|||+|-.|+.|+++.= ...|+-+|.+...++.+.+ .++-+ ++++ ..++.-.+.||+|-|+==|...
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s--~~~~~v~~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWAS--NLYEPVEGKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe--cccccccccccEEEeCCCccCC
Confidence 899999999999999998731 2245556665455554332 23322 3332 3334444799999998888855
Q ss_pred CCCC--CHHHHHHHhhhhccCCcEEEEEcC--hHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 546 KDRC--ETEDILLEMDRILRPEGGVIFRDD--VDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 546 ~~~c--~~~~~l~E~dRiLRPgG~~i~~d~--~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
+.-- -.+.++.+.-+-|++||.++|--. .....+|++++. ++.++... ++-+||=++|
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k 299 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKK 299 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEec
Confidence 4320 113688888999999999988543 345666776665 45544333 3466776666
No 257
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.94 E-value=1.6e-05 Score=85.03 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=76.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCCC---Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTYP---RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~yp---~t~Dlih~~~~f 542 (626)
-..|||.|||+|++...++..+. +|+.+|.++.|+..+.++ |+-. ++-.+.++...| .+||+|.++--|
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCC
Confidence 34799999999999877666554 788999998888865543 4422 111123333333 799999997555
Q ss_pred ccCC--C----CCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCC
Q 006905 543 SLYK--D----RCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKW 589 (626)
Q Consensus 543 ~~~~--~----~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w 589 (626)
.... . ......+|.|+.|+|||||++++--+.+ ..++++++.--|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 4211 1 1224789999999999999998865432 144566777777
No 258
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.94 E-value=5e-05 Score=84.17 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=66.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc----CCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER----LPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~----Lpf~d~sFDlV~~~~~ 284 (626)
..+|||+|||+|.++..|++. .|+++|+++.++..+.. .+...++ .+.+..+|+.. +++.+++||+|+....
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~-n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ-NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP 371 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHH-HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC
Confidence 458999999999999999875 68888887765554433 3334454 46677777543 2344568999998664
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
- ..-...++..+.+ |+|++.++++..
T Consensus 372 r---~G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 372 R---KGCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred C---CCCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 3 1112456665554 899998888754
No 259
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.93 E-value=0.00011 Score=73.26 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=69.7
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC---CccceeeeccccccC
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP---RTYDLIHADSVFSLY 545 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp---~t~Dlih~~~~f~~~ 545 (626)
.-.|=|||||-+..|+++.+. .|.-..+++.... + .. | ....-| .+.|++.+. ++..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~-----------V---ta--c-dia~vPL~~~svDv~Vfc--LSLM 133 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR-----------V---TA--C-DIANVPLEDESVDVAVFC--LSLM 133 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SSTT-----------E---EE--S--TTS-S--TT-EEEEEEE--S---
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCCCC-----------E---EE--e-cCccCcCCCCceeEEEEE--hhhh
Confidence 457999999999999887543 3544445554321 1 11 1 123444 999987652 2222
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEcChHH---HHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEecc
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRDDVDE---LVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKLY 613 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~---~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~~ 613 (626)
+ =+..+.|.|..|||||||.++|.+-..- .+...+.++++..+....|..+ .--.++..+|.-
T Consensus 134 G--Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n---~~F~~f~F~K~~ 199 (219)
T PF05148_consen 134 G--TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESN---KHFVLFEFKKIR 199 (219)
T ss_dssp S--S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--S---TTEEEEEEEE-S
T ss_pred C--CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCC---CeEEEEEEEEcC
Confidence 2 2678999999999999999999876543 4555566888888887665443 334566667754
No 260
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.92 E-value=4.8e-05 Score=81.00 Aligned_cols=95 Identities=12% Similarity=0.170 Sum_probs=67.5
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhccc------cee-ccc-cccCCCCCCccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLV------GTY-TNW-CEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli------~~~-~~~-~e~~~~yp~t~Dlih~~~~f 542 (626)
.+|||+|||+|.++..|++++. +|+.+|.+++|++++.+|.-- +.. ..+ +..+...+++||+|-|..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 5799999999999999999875 899999999999999887421 000 011 22334446899999999998
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.|+.+. .+..++..+.++ .+||. ||+
T Consensus 223 ~H~p~~-~~~~ll~~l~~l-~~g~l-iIs 248 (315)
T PLN02585 223 IHYPQD-KADGMIAHLASL-AEKRL-IIS 248 (315)
T ss_pred EecCHH-HHHHHHHHHHhh-cCCEE-EEE
Confidence 887642 334566666664 45555 444
No 261
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.89 E-value=7.4e-06 Score=84.53 Aligned_cols=108 Identities=21% Similarity=0.218 Sum_probs=75.1
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeE
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDM 278 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDl 278 (626)
.+..+++..... +..+||+|||.|-.+.--....+++.|+ ....+.-++..+.. ...+.|+..+|+.+.+||.
T Consensus 34 p~v~qfl~~~~~-gsv~~d~gCGngky~~~~p~~~~ig~D~-----c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~ 106 (293)
T KOG1331|consen 34 PMVRQFLDSQPT-GSVGLDVGCGNGKYLGVNPLCLIIGCDL-----CTGLLGGAKRSGGD-NVCRADALKLPFREESFDA 106 (293)
T ss_pred HHHHHHHhccCC-cceeeecccCCcccCcCCCcceeeecch-----hhhhccccccCCCc-eeehhhhhcCCCCCCcccc
Confidence 344444442222 5689999999995443211124555555 33344445444443 4556789999999999999
Q ss_pred EEeccccccccccH--HHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLIPWNQFG--GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+++.-++||+.... ..+++|+.|+|||||...+..
T Consensus 107 ~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 107 ALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999998987654 689999999999999987753
No 262
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.88 E-value=9.2e-05 Score=65.07 Aligned_cols=97 Identities=29% Similarity=0.371 Sum_probs=63.2
Q ss_pred EEEeCCCCchH--HHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEccccc--CCCCC-CCeeEEEeccccc
Q 006905 215 AIDTGCGVASW--GAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAER--LPYPS-RAFDMAHCSRCLI 286 (626)
Q Consensus 215 VLDIGCGtG~~--a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~--Lpf~d-~sFDlV~~~~~l~ 286 (626)
+||+|||+|.. ...+... .++++|+++..+.... ......+.. +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALAR-ARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHH-hhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 3444332 3555666554443311 111112211 3455556554 78877 489999 666665
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++.. ....+.++.++|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6555 68899999999999999999864
No 263
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.88 E-value=3.1e-05 Score=91.00 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=70.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEccccc-CCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAER-LPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~~-Lpf~d~sFDlV~~~~~ 284 (626)
+++|||+|||+|.++..++.. .|+++|+++..+..+..+.. .+++ .+.+..+|... +.-..++||+|++..-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~-~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFA-LNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 458999999999999999876 48888888866655444433 3444 35677777433 2111468999999653
Q ss_pred cccc----------cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LIPW----------NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~h~----------~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...- ..+...++..+.++|+|||.++++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2111 11124678888999999999999754
No 264
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.84 E-value=5.7e-05 Score=79.09 Aligned_cols=119 Identities=14% Similarity=0.251 Sum_probs=81.9
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcc-cHHHHHHhcccce---eccc---cccCCCCCCccceeeecc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKIN-TLGVIYERGLVGT---YTNW---CEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~-~l~~~~~rgli~~---~~~~---~e~~~~yp~t~Dlih~~~ 540 (626)
=.-|.|||+|||-|-+.-.|+.++. -.|+++|.+.- .+++-+-+-++|. .|-. -|.++. .++||+|-|.|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG 190 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG 190 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee
Confidence 3457899999999999999999876 24666665422 3444444455441 1110 123333 49999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEE------c------------Ch------HHHHHHHHHHHhCCCeeE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFR------D------------DV------DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~------d------------~~------~~~~~~~~~~~~l~w~~~ 592 (626)
|+=|.. +.-+.|.++...|||||.+|+- | .| -....++.-+++..++-.
T Consensus 191 VLYHrr---~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v 263 (315)
T PF08003_consen 191 VLYHRR---SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDV 263 (315)
T ss_pred ehhccC---CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceE
Confidence 998766 5578999999999999999973 1 01 125667777777777644
No 265
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.84 E-value=2.5e-05 Score=78.24 Aligned_cols=127 Identities=17% Similarity=0.238 Sum_probs=79.2
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH-----hcccceec-cccccCCCCCCccceeeeccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE-----RGLVGTYT-NWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~-----rgli~~~~-~~~e~~~~yp~t~Dlih~~~~ 541 (626)
.....+||.|||.|..+..|+-.-.-.+-+| +..+..++.+.+ .+-++.+. .=-+.|.+=+..||+|+++++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3577899999999999998865522222333 333568888883 33333222 112233322379999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-----------H-----HHHHHHHHHHhCCCeeEEeecC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDDV-----------D-----ELVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-----------~-----~~~~~~~~~~~l~w~~~~~~~e 597 (626)
..|+.+. ++...|.-.-.-|||+|.+|+-|+. | ....+++|+++=.+++...+.+
T Consensus 132 lghLTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 LGHLTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGGS-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hccCCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 9999984 7778899999999999999996432 1 2677888888877777654444
No 266
>PLN02672 methionine S-methyltransferase
Probab=97.84 E-value=0.00013 Score=88.25 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-----------------CeEEEEcccccCC
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-----------------PALIGVLAAERLP 270 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-----------------~~~~~v~d~~~Lp 270 (626)
+.+|||+|||+|.++..|+++ .++++|+++..+..+..+... +++ .+.+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhhh-
Confidence 358999999999999998874 589999988666555444432 211 356666664332
Q ss_pred CCC--CCeeEEEecccccccc---------------------------------ccH----HHHHHHHHhcccCCeEEEE
Q 006905 271 YPS--RAFDMAHCSRCLIPWN---------------------------------QFG----GIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 271 f~d--~sFDlV~~~~~l~h~~---------------------------------~~~----~~~L~Ei~RvLKPGG~lvi 311 (626)
+.+ ..||+|+++...+.-. .+. ..++.+..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 3699999976533110 111 3577888899999999999
Q ss_pred EeC
Q 006905 312 SGP 314 (626)
Q Consensus 312 s~p 314 (626)
...
T Consensus 277 EiG 279 (1082)
T PLN02672 277 NMG 279 (1082)
T ss_pred EEC
Confidence 754
No 267
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.83 E-value=7.6e-06 Score=73.19 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=68.1
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------cceec-cccccCCCCC-Cccceeeecccc
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------VGTYT-NWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------i~~~~-~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
+|||+|||.|.+..++++.+ ..+++.+|..+..++++..+=- +.+++ |+.+....++ ..||+|-++--|
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 69999999999999999886 3489999998777776665322 23333 2222222344 999999998888
Q ss_pred ccCC-C----CCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYK-D----RCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~-~----~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.... . +-....++.++.|+|||||.+++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 7432 1 113457899999999999999874
No 268
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.83 E-value=0.00014 Score=77.48 Aligned_cols=96 Identities=16% Similarity=0.274 Sum_probs=61.5
Q ss_pred CcHHHHHHHHHHhhccC------CCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--e
Q 006905 192 NGADAYIDDIGKLINLN------DGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP--A 259 (626)
Q Consensus 192 ~ga~~yi~~L~~ll~l~------~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~--~ 259 (626)
.+.-.|+..+.+++... .+...++||||||+|.+...|+.+ .++++|+++..+..++...+...++. +
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 34667888888887532 234578999999999777777654 68899998866665555444331343 3
Q ss_pred EEEE-cccccCC----CCCCCeeEEEecccccc
Q 006905 260 LIGV-LAAERLP----YPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 260 ~~~v-~d~~~Lp----f~d~sFDlV~~~~~l~h 287 (626)
.+.. .+...+. .+.+.||+|+|+.-++.
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 3322 1222221 24668999999997643
No 269
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.82 E-value=9.9e-05 Score=71.84 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=59.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC----CCeEEEEccc-ccC--C-CCCCCeeE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERG----VPALIGVLAA-ERL--P-YPSRAFDM 278 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg----~~~~~~v~d~-~~L--p-f~d~sFDl 278 (626)
.+.+|||||||+|..+..++.. .|+.+|..+ .-+.....+..++ ..+.+...+- ... . .....||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4669999999999777666665 788899866 3333333333333 2334444431 111 1 23468999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+++.++ ........++.-+.++|+|+|.++++.+
T Consensus 123 IlasDv~-Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVL-YDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEeccc-chHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999998 4444458899999999999999777743
No 270
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.82 E-value=7.9e-05 Score=81.79 Aligned_cols=101 Identities=11% Similarity=-0.008 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEcccccC-C---CCCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAERL-P---YPSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~~L-p---f~d~sFDlV~~ 281 (626)
+.+|||+|||+|.++..++.. .++++|+++..+..+.. .+..+++ .+.+..+|+... . ...++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~-N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQ-NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 458999999999998775543 58899998866554433 3334454 356777775442 1 13468999999
Q ss_pred ccccccccc--------cHHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQ--------FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~--------~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
......-.. ....++....++|+|||.|++..
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 764311110 11345566789999999999864
No 271
>PLN03075 nicotianamine synthase; Provisional
Probab=97.81 E-value=0.00015 Score=76.34 Aligned_cols=139 Identities=11% Similarity=0.049 Sum_probs=88.2
Q ss_pred CceeEEeccCchhhHhhhhhCCC-eEEEEeccCccCcccHHHHHHh-----cc---ccee-ccccccCCCCC--Ccccee
Q 006905 469 RYRNILDMNAHLGGFAAALIDFP-VWVMNVVPAEAKINTLGVIYER-----GL---VGTY-TNWCEAMSTYP--RTYDLI 536 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~-v~~mnv~~~~~~~~~l~~~~~r-----gl---i~~~-~~~~e~~~~yp--~t~Dli 536 (626)
.-++|+|+|||.|++.+.+.... .--..++.+|.++.+++.+.+. |+ +... +|..+ ..+ ..||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~---~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD---VTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh---cccccCCcCEE
Confidence 56889999999998876654321 1112478889998888866552 33 2222 22222 222 789999
Q ss_pred eeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC--h-HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEecc
Q 006905 537 HADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD--V-DELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKLY 613 (626)
Q Consensus 537 h~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~--~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~~ 613 (626)
-+. ++.+. ++-+.+.+|..+.|.|||||+++++-. + ..+...-....-=.|+...+-|-.++ +-.-++|++|.-
T Consensus 200 F~~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~~r~~~ 276 (296)
T PLN03075 200 FLA-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVIIARKPG 276 (296)
T ss_pred EEe-ccccc-ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEEEEeec
Confidence 997 44443 223668999999999999999999842 2 12211111111117888766555454 557899999965
No 272
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.81 E-value=2.5e-05 Score=74.95 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=54.7
Q ss_pred cCccCcccHHHHHHhcc---------cceeccccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEE
Q 006905 499 PAEAKINTLGVIYERGL---------VGTYTNWCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGV 568 (626)
Q Consensus 499 ~~~~~~~~l~~~~~rgl---------i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ 568 (626)
++|.+++||+++.+|-- |..++.=++.++ ++ ++||+|-+..++.+.. +...+|.|+.|+|||||.+
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEE
Confidence 57889999999976531 334443345543 44 7999999988777765 5689999999999999999
Q ss_pred EEEcCh
Q 006905 569 IFRDDV 574 (626)
Q Consensus 569 i~~d~~ 574 (626)
+|.|-.
T Consensus 78 ~i~d~~ 83 (160)
T PLN02232 78 SILDFN 83 (160)
T ss_pred EEEECC
Confidence 988643
No 273
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.79 E-value=0.00014 Score=79.32 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC-CCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP-YPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp-f~d~sFDlV~~~~~l~h 287 (626)
+.+|||+|||+|.++..++.+ .++++|+++..+..+. +.+...++ .+.+..+|+.... ....+||+|++....
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr-- 310 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR-- 310 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC--
Confidence 358999999999999999876 6888888775554333 33444555 4667777765432 122469999998743
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
..-...++..+. .++|++.++++..|.
T Consensus 311 -~G~~~~~l~~l~-~~~p~~ivyvsc~p~ 337 (374)
T TIGR02085 311 -RGIGKELCDYLS-QMAPKFILYSSCNAQ 337 (374)
T ss_pred -CCCcHHHHHHHH-hcCCCeEEEEEeCHH
Confidence 222245555554 479999999996533
No 274
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.79 E-value=3.2e-05 Score=78.76 Aligned_cols=102 Identities=18% Similarity=0.252 Sum_probs=73.5
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccc
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~ 541 (626)
... ...++|+|+|+|.|.++.+++++ ++ .++-.|.+ .+++.+.+..-|...- ..-|.++|. +|++...++
T Consensus 96 ~d~-~~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~v~Dlp-~v~~~~~~~~rv~~~~--gd~f~~~P~-~D~~~l~~v 167 (241)
T PF00891_consen 96 FDF-SGFKTVVDVGGGSGHFAIALARAYPNL---RATVFDLP-EVIEQAKEADRVEFVP--GDFFDPLPV-ADVYLLRHV 167 (241)
T ss_dssp STT-TTSSEEEEET-TTSHHHHHHHHHSTTS---EEEEEE-H-HHHCCHHHTTTEEEEE--S-TTTCCSS-ESEEEEESS
T ss_pred ccc-cCccEEEeccCcchHHHHHHHHHCCCC---cceeeccH-hhhhcccccccccccc--ccHHhhhcc-ccceeeehh
Confidence 445 67899999999999999999765 33 34446665 6666666633233322 133477888 999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCC--cEEEEEcCh
Q 006905 542 FSLYKDRCETEDILLEMDRILRPE--GGVIFRDDV 574 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPg--G~~i~~d~~ 574 (626)
++.+.+. +...||..+.+.|+|| |.++|-|.+
T Consensus 168 Lh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 168 LHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9998863 5567999999999999 999997643
No 275
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.76 E-value=5.9e-05 Score=74.97 Aligned_cols=112 Identities=22% Similarity=0.283 Sum_probs=74.7
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHH----Hhcc--cceeccccccCC---C-C-CCccceeeec
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIY----ERGL--VGTYTNWCEAMS---T-Y-PRTYDLIHAD 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~----~rgl--i~~~~~~~e~~~---~-y-p~t~Dlih~~ 539 (626)
..+||+|||.|.|...++...- -.|++++|...+-+..+. ++|+ +.+++ +.+.. . + |.+.|-||.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~--~da~~~l~~~~~~~~v~~i~i- 94 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLR--GDARELLRRLFPPGSVDRIYI- 94 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEE--S-CTTHHHHHSTTTSEEEEEE-
T ss_pred CeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccceEEEE--ccHHHHHhhcccCCchheEEE-
Confidence 3799999999999999986511 138999998876665444 4455 22332 22222 1 3 389999887
Q ss_pred cccc-------cCCCCCCHHHHHHHhhhhccCCcEEEE-EcChHHHHHHHHHHHhC
Q 006905 540 SVFS-------LYKDRCETEDILLEMDRILRPEGGVIF-RDDVDELVKVKRIIDAL 587 (626)
Q Consensus 540 ~~f~-------~~~~~c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~~~~~~~~l 587 (626)
.|. |.+.|=--+..|.++.|+|+|||.+.+ ||..+....+.+.+...
T Consensus 95 -~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 95 -NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp -ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred -eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 555 233333336799999999999999988 57778888888877775
No 276
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.73 E-value=0.00029 Score=72.43 Aligned_cols=117 Identities=18% Similarity=0.289 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHhhccC-CCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc----CCCeEEEE
Q 006905 193 GADAYIDDIGKLINLN-DGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER----GVPALIGV 263 (626)
Q Consensus 193 ga~~yi~~L~~ll~l~-~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er----g~~~~~~v 263 (626)
..+++.+.+.+.+... ......+||+|||+|.++..|+.. .++++|.++ +++..|.++ ++...+.+
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~-----~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK-----AAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccH-----HHHHHHHHHHHHHhhcCceEE
Confidence 3456666666665422 222347999999999888887764 677777755 444444433 33222222
Q ss_pred c------c-cccCCCCCCCeeEEEeccccccccccH-------------------------HHHHHHHHhcccCCeEEEE
Q 006905 264 L------A-AERLPYPSRAFDMAHCSRCLIPWNQFG-------------------------GIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 264 ~------d-~~~Lpf~d~sFDlV~~~~~l~h~~~~~-------------------------~~~L~Ei~RvLKPGG~lvi 311 (626)
. + ....+...+.+|+++||.-.+.-.+.. ..++.-+.|.|+|||.+++
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 2 2 233445678999999987543211110 1456678899999999999
Q ss_pred EeC
Q 006905 312 SGP 314 (626)
Q Consensus 312 s~p 314 (626)
...
T Consensus 284 e~~ 286 (328)
T KOG2904|consen 284 ELV 286 (328)
T ss_pred Eec
Confidence 753
No 277
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00045 Score=67.72 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=59.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhh---CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLS---RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~---~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
.+-.+++|+|+|||||.++...+- ..|+++|+++. ..+...+.+.+.+..+.+.+.|..+.. +.||.|+.|..
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~-a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPP 117 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE-ALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPP 117 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH-HHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCC
Confidence 344567899999999966654433 37999999884 344555556565667888887776654 56889999876
Q ss_pred cccccccH-HHHHHHHHhc
Q 006905 285 LIPWNQFG-GIYLIEVDRV 302 (626)
Q Consensus 285 l~h~~~~~-~~~L~Ei~Rv 302 (626)
+--+.... ..+|....+.
T Consensus 118 FG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 118 FGSQRRHADRPFLLKALEI 136 (198)
T ss_pred CccccccCCHHHHHHHHHh
Confidence 53222111 4455555544
No 278
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.66 E-value=0.00011 Score=71.38 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=74.7
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceecc-----ccccCCCC----CCccceeee
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTN-----WCEAMSTY----PRTYDLIHA 538 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~-----~~e~~~~y----p~t~Dlih~ 538 (626)
+...+|||+||+.|||..+++++......|+++|..+. -+. ++...+..| .-+.+... .+.||+|.|
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-DPL---QNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEecccc-ccc---cceeeeecccchhhHHHhhhhhccccccCcceecc
Confidence 57899999999999999999999733346677776522 111 222111001 11112222 168999999
Q ss_pred ccccccCCCCCC-----HH---HHHHHhhhhccCCcEEEEE-----cChHHHHHHHHHHHhCCCeeEEeecCCCCCCcce
Q 006905 539 DSVFSLYKDRCE-----TE---DILLEMDRILRPEGGVIFR-----DDVDELVKVKRIIDALKWQSQIVDHEDGPLEREK 605 (626)
Q Consensus 539 ~~~f~~~~~~c~-----~~---~~l~E~dRiLRPgG~~i~~-----d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~ 605 (626)
++.+....++-. +. ..|.=+-..|||||.+|+- +..+.+..++...+..++- .-.-.++...|.
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~---Kp~~sr~~s~E~ 174 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV---KPPSSRSESSEE 174 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE---E-TTSBTTCBEE
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE---ECcCCCCCccEE
Confidence 997765443211 11 1333334779999998884 2346677777766664332 122344556788
Q ss_pred EEEEEe
Q 006905 606 LLFAVK 611 (626)
Q Consensus 606 ~l~~~K 611 (626)
-|||++
T Consensus 175 Ylv~~~ 180 (181)
T PF01728_consen 175 YLVCRG 180 (181)
T ss_dssp EEESEE
T ss_pred EEEEcC
Confidence 888864
No 279
>PLN02476 O-methyltransferase
Probab=97.66 E-value=0.00024 Score=74.32 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=66.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccc-cCC-C----CCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAE-RLP-Y----PSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~-~Lp-f----~d~sFDl 278 (626)
.++|||||+|+|..+..|+.. .++++|.++.... .+.+..++.|+. +.+..+++. .|+ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~-~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLE-VAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 458999999999999888863 4788888774333 333333455653 556666632 233 1 1368999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
|+.-. .......++..+.++|+|||.+++.
T Consensus 198 VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 198 AFVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 98744 2233378899999999999999986
No 280
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.64 E-value=0.00051 Score=70.74 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=66.7
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYP 272 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~ 272 (626)
.|...+.+.+ +.+|||.|.|+|+++.+|+.. .|...++...-...+. +.....|+. +.+...|...-.|.
T Consensus 31 ~I~~~l~i~p--G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~-~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 31 YILMRLDIRP--GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKAR-KNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHTT--T--T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH-HHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHcCCCC--CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHH-HHHHHcCCCCCceeEecceeccccc
Confidence 3444454555 559999999999999999874 5777777553332222 233344553 56677776443342
Q ss_pred ---CCCeeEEEeccccccccccHHHHHHHHHhcc-cCCeEEEEEeC
Q 006905 273 ---SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVL-RPGGYWILSGP 314 (626)
Q Consensus 273 ---d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvL-KPGG~lvis~p 314 (626)
+..||.|+.-. ++ +..++..+.++| ||||.++.-.|
T Consensus 108 ~~~~~~~DavfLDl-----p~-Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 108 EELESDFDAVFLDL-----PD-PWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp TT-TTSEEEEEEES-----SS-GGGGHHHHHHHE-EEEEEEEEEES
T ss_pred ccccCcccEEEEeC-----CC-HHHHHHHHHHHHhcCCceEEEECC
Confidence 36799998733 33 466889999999 99999998765
No 281
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.60 E-value=0.0012 Score=66.65 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEE-ccc-ccCC-CCCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGV-LAA-ERLP-YPSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v-~d~-~~Lp-f~d~sFDlV~~ 281 (626)
.++||+||.+.|.-+..|+.. .++++|+.+.....+...++ +.|+. +.... +|+ +.+. ...++||+|+.
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~-~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH-HcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 458999999999888888774 48889987755444443333 44543 33333 242 2222 45689999986
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
-. ...+...+|..+.++|||||.+++.
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 33 3344478999999999999999996
No 282
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.58 E-value=0.00023 Score=73.65 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP 272 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~ 272 (626)
...++.+.+.+.... +.+|||||||+|.++..|+++ .++++|+++..+......+. . ...+.+..+|+..++++
T Consensus 15 ~~~~~~iv~~~~~~~--~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~-~-~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTD--GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEI-A-AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCCC--cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhc-c-CCCEEEEEeccccCCch
Confidence 345556666654443 458999999999999999987 57888886644332221111 1 22466777788777765
Q ss_pred CCCeeEEEecccc
Q 006905 273 SRAFDMAHCSRCL 285 (626)
Q Consensus 273 d~sFDlV~~~~~l 285 (626)
.||.|+++...
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 48999998865
No 283
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.58 E-value=0.0004 Score=70.72 Aligned_cols=109 Identities=19% Similarity=0.272 Sum_probs=71.4
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------ccee-ccccccCCCCCCccceeeecc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------VGTY-TNWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------i~~~-~~~~e~~~~yp~t~Dlih~~~ 540 (626)
.-.+|||+|||+|+|+..|++.++ -.|+++|.+.+|+...+...- ..+- .+|.+....+ .+||+.-+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~-~~~Dvsfi-- 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF-ATFDVSFI-- 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc-eeeeEEEe--
Confidence 346899999999999999999975 468999999878875333321 1111 1233322112 25555444
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEE-------------------cCh---HHHHHHHHHHHhCCCeeE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFR-------------------DDV---DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~-------------------d~~---~~~~~~~~~~~~l~w~~~ 592 (626)
.+..+|..|.+.|+| |.+|+- |.. .++.++...+..+.|.+.
T Consensus 150 ---------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 150 ---------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred ---------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 335678999999999 887763 222 346666666777888765
No 284
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.58 E-value=0.00011 Score=78.02 Aligned_cols=98 Identities=14% Similarity=0.222 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCe--EEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPA--LIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~--~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
.++|||+|||+|.+...-++. .|.+++.+. +..-..+.++.++... .+..+.++.+-+|-...|+|++-+.-.
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 569999999999777766665 788888755 3345556666777654 344444555555577899999844220
Q ss_pred --cccccHHHHHHHHHhcccCCeEEEE
Q 006905 287 --PWNQFGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 287 --h~~~~~~~~L~Ei~RvLKPGG~lvi 311 (626)
-+......+|..=.+.|+|||.++=
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 1112225667777899999998754
No 285
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.57 E-value=0.00039 Score=69.71 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=66.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CC-----CCCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LP-----YPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-----f~d~sFDl 278 (626)
.++||+|||++|.-+..|++. .++++++++... +.+.++....|. .+.+..+++.. ++ ...+.||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 458999999999988888864 688888877433 333334444454 36666666432 22 12468999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+.-. .......++..+.++|+|||.+++..
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 98744 23344778999999999999999973
No 286
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.57 E-value=0.00033 Score=74.57 Aligned_cols=95 Identities=23% Similarity=0.222 Sum_probs=70.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcc-cccCCCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLA-AERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d-~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
...++|+|.|.|..+..+... .+.+++++...+.+++...+ .| +...-+| .+..|- -|+|++-+++|||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g--V~~v~gdmfq~~P~----~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG--VEHVAGDMFQDTPK----GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC--cceecccccccCCC----cCeEEEEeecccC
Confidence 468999999999999998886 67788885543333332222 33 3333344 444553 4599999999999
Q ss_pred cccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.++. ..+|++++..|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9876 7999999999999999999753
No 287
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.57 E-value=0.00024 Score=78.76 Aligned_cols=100 Identities=24% Similarity=0.335 Sum_probs=64.6
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cccceeccccc-cC--CCC-C-Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCE-AM--STY-P-RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e-~~--~~y-p-~t~Dlih~~ 539 (626)
-.+|||||||.|+++.++++. + ...|+.+|.+++++..+.++ |+-..+..-+. .. ..+ + .+||.|.++
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 368999999999999998764 2 22688999998888876554 43101100111 11 111 2 789999864
Q ss_pred ------cccccCCC---CCC----------HHHHHHHhhhhccCCcEEEEE
Q 006905 540 ------SVFSLYKD---RCE----------TEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 540 ------~~f~~~~~---~c~----------~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+++....+ +=. ...+|.++-|+|||||.++++
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 33332111 001 145999999999999999997
No 288
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.57 E-value=0.00018 Score=79.79 Aligned_cols=116 Identities=19% Similarity=0.277 Sum_probs=72.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceec-cccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYT-NWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~-~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-..|||+|||.|+.+.++++..- -..|+.+|.++.++..+.++ |+ +.+++ |-.+....++ .+||.|-++--+
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 35799999999999999987621 03688999998888877554 22 22222 2221111133 789999855433
Q ss_pred ccCC------------CC-------CCHHHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHh
Q 006905 543 SLYK------------DR-------CETEDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDA 586 (626)
Q Consensus 543 ~~~~------------~~-------c~~~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~ 586 (626)
+... .. .....+|.+.-++|||||+++++. ..+....++.++++
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 3211 00 012358999999999999999874 23334455555544
No 289
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.57 E-value=8.1e-05 Score=74.84 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHc----C---CCeEEEE
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRN---IITMSFAPRDTHEAQVQFALER----G---VPALIGV 263 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~~---V~avdis~~dls~a~i~~A~er----g---~~~~~~v 263 (626)
.+.+.+.+.+.-......+.+|||...|-|.++...++++ |++++.++.-+ ++|.-+ + ..+.+..
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-----eLa~lNPwSr~l~~~~i~iil 191 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-----ELAKLNPWSRELFEIAIKIIL 191 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-----EeeccCCCCccccccccEEec
Confidence 3445555555544445556799999999999999998884 56666655333 233211 1 1245566
Q ss_pred cccccC--CCCCCCeeEEEeccccccccccH--HHHHHHHHhcccCCeEEEEE
Q 006905 264 LAAERL--PYPSRAFDMAHCSRCLIPWNQFG--GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 264 ~d~~~L--pf~d~sFDlV~~~~~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis 312 (626)
+|+..+ .|+|.+||+|+--..-....... ..+.+|++|+|||||.++--
T Consensus 192 GD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 192 GDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred ccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 664433 47899999998533221111222 68899999999999998874
No 290
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.55 E-value=0.00065 Score=70.78 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=83.0
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc--c--------cceec-cccccCCCCCCcccee
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG--L--------VGTYT-NWCEAMSTYPRTYDLI 536 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg--l--------i~~~~-~~~e~~~~yp~t~Dli 536 (626)
..-++||++|||.|+++..+++.+ -+.+|+-+|.++++++.+.+.- + +.+.+ |--+-+...+++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 345699999999999999998775 1347788888878888776641 0 11111 1111111236899999
Q ss_pred eeccccccCCCC-CCHHHHHHHhhhhccCCcEEEEEcC-----hHHHHHHHHHHHhCCCeeEEeecC--CCCCCcceEEE
Q 006905 537 HADSVFSLYKDR-CETEDILLEMDRILRPEGGVIFRDD-----VDELVKVKRIIDALKWQSQIVDHE--DGPLEREKLLF 608 (626)
Q Consensus 537 h~~~~f~~~~~~-c~~~~~l~E~dRiLRPgG~~i~~d~-----~~~~~~~~~~~~~l~w~~~~~~~e--~~~~~~e~~l~ 608 (626)
-++......... --....+..+.|+|+|||.+++.-. .+.+..+.+.++..=..+..+..- .-+.+.-.+++
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~ 229 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTI 229 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEE
Confidence 886543221111 1135678899999999999998522 233444334333332223322211 11113356888
Q ss_pred EEe
Q 006905 609 AVK 611 (626)
Q Consensus 609 ~~K 611 (626)
|.|
T Consensus 230 as~ 232 (270)
T TIGR00417 230 GSK 232 (270)
T ss_pred EEC
Confidence 877
No 291
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.55 E-value=0.0002 Score=74.69 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=56.7
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPYP 272 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf~ 272 (626)
.++.+.+.+.... +.+|||||||+|.++..|+++ .++++|+++.++. .++++. ..+.+..+|+..++++
T Consensus 30 i~~~i~~~l~~~~--~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~-----~~~~~~~~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 30 ILDKIVDAAGPQP--GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAP-----ILAETFAEDNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHhcCCCC--cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHH-----HHHHhhccCceEEEEChhhcCCHH
Confidence 4455666554433 458999999999999999987 6888888765443 333321 3567778888888766
Q ss_pred CCCeeEEEecccc
Q 006905 273 SRAFDMAHCSRCL 285 (626)
Q Consensus 273 d~sFDlV~~~~~l 285 (626)
+-.+|.|+++...
T Consensus 103 ~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ELQPLKVVANLPY 115 (272)
T ss_pred HcCcceEEEeCCc
Confidence 4336889888643
No 292
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00038 Score=74.26 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=67.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-e-EEEEcccccCCCCCCCeeEEEeccccc-
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-A-LIGVLAAERLPYPSRAFDMAHCSRCLI- 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~-~~~v~d~~~Lpf~d~sFDlV~~~~~l~- 286 (626)
+..+||==||||++.....-. .+++.|++..++..+..++-. .++. . ...+.|+..+|+++++||.|++-.-.-
T Consensus 198 G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~-y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGr 276 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY-YGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGR 276 (347)
T ss_pred CCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh-hCcCceeEEEecccccCCCCCCccceEEecCCCCc
Confidence 448999999999988776555 455555544333333222221 1332 2 233448999999999999999843220
Q ss_pred ----ccc--ccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 287 ----PWN--QFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 ----h~~--~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.-. +.. ..+|..+.++|++||++++..|
T Consensus 277 st~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 277 STKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 111 112 6889999999999999999876
No 293
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.54 E-value=0.00049 Score=71.59 Aligned_cols=97 Identities=21% Similarity=0.268 Sum_probs=64.4
Q ss_pred CCCEEEEeCCCCc----hHHHHHhhC---------CcEEEeCCccchHHHHHHHHHH---------cCCC----------
Q 006905 211 SIRTAIDTGCGVA----SWGAYLLSR---------NIITMSFAPRDTHEAQVQFALE---------RGVP---------- 258 (626)
Q Consensus 211 ~~~~VLDIGCGtG----~~a~~La~~---------~V~avdis~~dls~a~i~~A~e---------rg~~---------- 258 (626)
..-+|+-.||++| +++..|.+. .|.|+|++.. .++.|+. ++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~-----~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~ 170 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLS-----VLEKARAGIYPSRELLRGLPPELLRRYFER 170 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHH-----HHHHHhcCCCChhHhhccCCHHHHhhhEee
Confidence 4568999999999 555555553 4566666553 3333321 1111
Q ss_pred ---------------eEEEEcccccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 259 ---------------ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 259 ---------------~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
+.|...+...-+...+.||+|+|.++++.+.... ..++..++..|+|||+|++-
T Consensus 171 ~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 171 GGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred cCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 2233333222222456799999999998776544 78999999999999999995
No 294
>PRK00811 spermidine synthase; Provisional
Probab=97.54 E-value=0.00062 Score=71.49 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=67.0
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc------c-----cceec-cccccCCCCCCccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG------L-----VGTYT-NWCEAMSTYPRTYD 534 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg------l-----i~~~~-~~~e~~~~yp~t~D 534 (626)
..-++|||+|||.|+.++.++++ ++ .+|+.+|..+.+++++.+.- + +.+++ |--+-+..-+++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 34678999999999999999887 44 47888888888999887641 1 11222 11111122247999
Q ss_pred eeeeccccccCCCC-CCHHHHHHHhhhhccCCcEEEEE
Q 006905 535 LIHADSVFSLYKDR-CETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 535 lih~~~~f~~~~~~-c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+|-++..-...... ---+.++.++.|+|+|||.+++.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99885321111110 01146788999999999999985
No 295
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.53 E-value=0.00056 Score=71.17 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=91.7
Q ss_pred HHHHHHHhhcc--CCCCCCEEEEeCCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHc----C------------
Q 006905 197 YIDDIGKLINL--NDGSIRTAIDTGCGVASWGAYLLSRN--IITMSFAPRDTHEAQVQFALER----G------------ 256 (626)
Q Consensus 197 yi~~L~~ll~l--~~~~~~~VLDIGCGtG~~a~~La~~~--V~avdis~~dls~a~i~~A~er----g------------ 256 (626)
.++.|.+..+. ......+||--|||.|.++..++.++ +.+.+++..|+-. .++.... +
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~--s~fiLn~~~~~~~~~I~Pf~~~~s 117 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLA--SNFILNHCSQPNQFTIYPFVHSFS 117 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHH--HHHHHcccCCCCcEEEecceeccc
Confidence 44556666552 22334689999999999999999984 5666666655422 1222211 0
Q ss_pred -------------CC-------------eEEEEcccccCCCCC---CCeeEEEeccccccccccHHHHHHHHHhcccCCe
Q 006905 257 -------------VP-------------ALIGVLAAERLPYPS---RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGG 307 (626)
Q Consensus 257 -------------~~-------------~~~~v~d~~~Lpf~d---~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG 307 (626)
+| .....+|...+..++ ++||+|++.+.+ .-..+.-.+|..|.++|||||
T Consensus 118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLkpgG 196 (270)
T PF07942_consen 118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLKPGG 196 (270)
T ss_pred CCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhccCC
Confidence 00 111222222222223 689999987644 555555789999999999999
Q ss_pred EEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhcccc
Q 006905 308 YWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKG 355 (626)
Q Consensus 308 ~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~~ 355 (626)
++|=.+|-.+ ...... ......+.-.++++..++++++|+.+.++.
T Consensus 197 ~WIN~GPLly-h~~~~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 197 YWINFGPLLY-HFEPMS-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred EEEecCCccc-cCCCCC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 8877776332 111110 011112333467788889999998776543
No 296
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.52 E-value=0.00024 Score=73.76 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=63.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
.+|||+|||.|+++..|++.---.-.|+.+|.++.+++.+.++ |+ +.+++.=...+......||.|.++--.+.
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 4699999999999988765310001488999998888766554 33 22333111122222256999987544332
Q ss_pred CC------C------CCC-------HHHHHHHhhhhccCCcEEEEE
Q 006905 545 YK------D------RCE-------TEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 545 ~~------~------~c~-------~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.+ + .-+ ...+|.++-++|||||+++++
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 0 001 124899999999999999997
No 297
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.51 E-value=0.00032 Score=67.34 Aligned_cols=104 Identities=17% Similarity=0.010 Sum_probs=75.0
Q ss_pred CCCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC-----CCCCCeeEEEeccc
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP-----YPSRAFDMAHCSRC 284 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp-----f~d~sFDlV~~~~~ 284 (626)
..+.-||++|.|+|.++..++++++.-.++...+.+........++.....+..+|+..+. +.+..||.|+|..-
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lP 126 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLP 126 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccc
Confidence 3455799999999999999999855444444444455566655555555556666655553 56778999999877
Q ss_pred cccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+..++... -++|.++...|++||.++.-.
T Consensus 127 ll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 127 LLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 65555443 578999999999999998864
No 298
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.51 E-value=0.0002 Score=79.93 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=70.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCC-C-Cccceeeec--
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTY-P-RTYDLIHAD-- 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~y-p-~t~Dlih~~-- 539 (626)
-.+|||+|||.|+++.+|++.---...|+.+|.++.+++.+.++ |+ |.+. +.....+ | .+||.|-++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~---~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETI---EGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEE---eCcccccccCCCCCEEEEcCC
Confidence 35799999999999887765300012688999999998866544 33 2222 2333333 3 789999854
Q ss_pred ----cccccCC------CCCCH-------HHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHh
Q 006905 540 ----SVFSLYK------DRCET-------EDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDA 586 (626)
Q Consensus 540 ----~~f~~~~------~~c~~-------~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~ 586 (626)
++|.... ...++ ..+|.++-++|||||.++++. +.+.-..|+.++++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 2222110 00111 248999999999999999974 22334455566554
No 299
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.51 E-value=0.0016 Score=63.94 Aligned_cols=144 Identities=20% Similarity=0.229 Sum_probs=91.3
Q ss_pred CCChhhchhh--hHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH--
Q 006905 437 GITPEIFQQN--SELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE-- 512 (626)
Q Consensus 437 ~~~~~~f~~d--~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~-- 512 (626)
|+..+.|..| ...-|+-|.- . .+..|.. ..--.++|+|||+|+.+-.++-. --...|.++|..+..++.+..
T Consensus 3 gipD~~F~~~~~~p~TK~EIRa-l-~ls~L~~-~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~ 78 (187)
T COG2242 3 GIPDELFERDEGGPMTKEEIRA-L-TLSKLRP-RPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNA 78 (187)
T ss_pred CCCchhhccCCCCCCcHHHHHH-H-HHHhhCC-CCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHH
Confidence 3444556666 2333433331 1 1233443 33447999999999999887721 122468888887666654432
Q ss_pred -h-cc--cceeccc-cccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHh
Q 006905 513 -R-GL--VGTYTNW-CEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDA 586 (626)
Q Consensus 513 -r-gl--i~~~~~~-~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~ 586 (626)
| |+ +-++..+ =+.++.+| +||.|...+ . -+++.+|...-.-|||||.+|.. -+.+...++-+.++.
T Consensus 79 ~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGG------g-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~ 150 (187)
T COG2242 79 ARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGG------G-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQ 150 (187)
T ss_pred HHhCCCcEEEEeccchHhhcCCC-CCCEEEECC------C-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHH
Confidence 2 21 1233322 23344455 888887633 2 47789999999999999999996 567888888888999
Q ss_pred CCC-eeE
Q 006905 587 LKW-QSQ 592 (626)
Q Consensus 587 l~w-~~~ 592 (626)
+.+ ++.
T Consensus 151 ~g~~ei~ 157 (187)
T COG2242 151 LGGREIV 157 (187)
T ss_pred cCCceEE
Confidence 999 554
No 300
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.51 E-value=0.00027 Score=78.72 Aligned_cols=122 Identities=17% Similarity=0.247 Sum_probs=74.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp~t~Dlih~~~~f 542 (626)
-.+|||+|||.|+++.++++.---...|+.+|.++++++.+.++ |+ +.+.+ |..+....++++||+|-++--.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 330 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC 330 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence 35799999999999998886410012688899988888877553 33 23333 2222222345899999875332
Q ss_pred ccCC------------CCCCH-------HHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHhC-CCee
Q 006905 543 SLYK------------DRCET-------EDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDAL-KWQS 591 (626)
Q Consensus 543 ~~~~------------~~c~~-------~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~l-~w~~ 591 (626)
+..+ ...++ ..+|.++-|+|||||.++++- ..+....++.+++.. .|+.
T Consensus 331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 2111 00111 348999999999999999752 123344555555553 2443
No 301
>PRK01581 speE spermidine synthase; Validated
Probab=97.50 E-value=0.00074 Score=72.92 Aligned_cols=147 Identities=11% Similarity=0.070 Sum_probs=86.7
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh--------c-c----cceec-cccccCCCCCCcc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER--------G-L----VGTYT-NWCEAMSTYPRTY 533 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r--------g-l----i~~~~-~~~e~~~~yp~t~ 533 (626)
..-++||++|||.|+.++.+++.+ -+.+|+.+|.++.+++++.+. | + +.+.+ |-.+-+..-++.|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 446799999999999999998874 235788888888999999862 1 1 11111 1111112224789
Q ss_pred ceeeeccccccC--CCCCCHHHHHHHhhhhccCCcEEEEEcCh-----HHHHHHHHHHHhCCCeeEEeecCCCCC-Ccce
Q 006905 534 DLIHADSVFSLY--KDRCETEDILLEMDRILRPEGGVIFRDDV-----DELVKVKRIIDALKWQSQIVDHEDGPL-EREK 605 (626)
Q Consensus 534 Dlih~~~~f~~~--~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-----~~~~~~~~~~~~l~w~~~~~~~e~~~~-~~e~ 605 (626)
|+|-++..-... ..+---...+..+.|.|+|||.+++.... +....+.+.++..-..+..+.+---.. ..-.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~Wg 307 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWG 307 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceE
Confidence 999987321111 11111145888999999999999886432 222334444444444443222211111 1266
Q ss_pred EEEEEecccC
Q 006905 606 LLFAVKLYWT 615 (626)
Q Consensus 606 ~l~~~K~~w~ 615 (626)
+++|.|....
T Consensus 308 F~~as~~~~~ 317 (374)
T PRK01581 308 FHIAANSAYV 317 (374)
T ss_pred EEEEeCCccc
Confidence 8888776554
No 302
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.50 E-value=0.00055 Score=70.50 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=53.8
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc---CCCeEEEEcccccCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER---GVPALIGVLAAERLPY 271 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er---g~~~~~~v~d~~~Lpf 271 (626)
..+.+.+.+.... +.+|||||||+|.++..|+++ .++++|+++..+ +.+.++ ...+.+...|+..+++
T Consensus 17 i~~~i~~~~~~~~--~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~-----~~l~~~~~~~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 17 VIQKIVEAANVLE--GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLA-----EILRKLLSLYERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHhcCCCC--cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHH-----HHHHHHhCcCCcEEEEECchhcCCh
Confidence 4445555554333 458999999999999999986 678888866433 333322 2345677778877776
Q ss_pred CCCCee---EEEecccc
Q 006905 272 PSRAFD---MAHCSRCL 285 (626)
Q Consensus 272 ~d~sFD---lV~~~~~l 285 (626)
+ .|| +|+++..+
T Consensus 90 ~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 90 P--DFPKQLKVVSNLPY 104 (253)
T ss_pred h--HcCCcceEEEcCCh
Confidence 5 466 88887654
No 303
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.49 E-value=0.00025 Score=78.88 Aligned_cols=119 Identities=17% Similarity=0.294 Sum_probs=74.0
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCC-------CCccceeeec
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTY-------PRTYDLIHAD 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~y-------p~t~Dlih~~ 539 (626)
.+|||+|||.|+.+.+|++.---...|+.+|.++.+++.+.++ |+ ..+.-.+.....+ +.+||.|-++
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCCEEEEe
Confidence 5699999999999998876410012588889988888876554 32 1111112223222 3689998864
Q ss_pred c------ccccCCC---C---CC-------HHHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHhC-CCe
Q 006905 540 S------VFSLYKD---R---CE-------TEDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDAL-KWQ 590 (626)
Q Consensus 540 ~------~f~~~~~---~---c~-------~~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~l-~w~ 590 (626)
- ++.+-.+ + .+ ...+|.++-|+|||||+++++. +.+....|+.++++. .|+
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 2 3321110 0 11 2468999999999999999873 234556666666654 354
No 304
>PLN02823 spermine synthase
Probab=97.48 E-value=0.00045 Score=74.27 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=69.6
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc---------CCCeEEEE
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER---------GVPALIGV 263 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er---------g~~~~~~v 263 (626)
|.+.+....-......++||.||+|.|..+..+++. .++++|+++. .++.+++. ...+.+..
T Consensus 89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~-----vv~lar~~~~~~~~~~~dprv~v~~ 163 (336)
T PLN02823 89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE-----VVDFCRKHLTVNREAFCDKRLELII 163 (336)
T ss_pred HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH-----HHHHHHHhcccccccccCCceEEEE
Confidence 444444332222334568999999999999888774 5778888663 44444432 12355666
Q ss_pred ccccc-CCCCCCCeeEEEeccccccccc------cHHHHHH-HHHhcccCCeEEEEEe
Q 006905 264 LAAER-LPYPSRAFDMAHCSRCLIPWNQ------FGGIYLI-EVDRVLRPGGYWILSG 313 (626)
Q Consensus 264 ~d~~~-Lpf~d~sFDlV~~~~~l~h~~~------~~~~~L~-Ei~RvLKPGG~lvis~ 313 (626)
.|... +....++||+|++-. ..++.. ....+++ .+.+.|+|||.+++..
T Consensus 164 ~Da~~~L~~~~~~yDvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 164 NDARAELEKRDEKFDVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ChhHHHHhhCCCCccEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 66433 333457899999853 222211 0146777 8999999999998864
No 305
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.48 E-value=0.00031 Score=78.05 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=72.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCC-CCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTY-PRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~y-p~t~Dlih~~~~ 541 (626)
-.+|||||||.||.+.++++.---...|+.+|.++.++..+.++ |+ +.+.+ |.. .+..+ +++||.|-++--
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCEEEECCC
Confidence 35799999999999988876410012689999999999887655 33 22222 222 22222 378999987543
Q ss_pred cccCCC---CC----------------CHHHHHHHhhhhccCCcEEEEE----cChHHHHHHHHHHHh
Q 006905 542 FSLYKD---RC----------------ETEDILLEMDRILRPEGGVIFR----DDVDELVKVKRIIDA 586 (626)
Q Consensus 542 f~~~~~---~c----------------~~~~~l~E~dRiLRPgG~~i~~----d~~~~~~~~~~~~~~ 586 (626)
-|..+. += ....+|.+.-+.|||||.++++ ...+....|+.+++.
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 332211 00 1134788999999999999997 233444455555543
No 306
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.47 E-value=0.0024 Score=63.07 Aligned_cols=132 Identities=13% Similarity=0.017 Sum_probs=73.2
Q ss_pred CCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHH
Q 006905 178 GDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALE 254 (626)
Q Consensus 178 ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~e 254 (626)
|..+..|.+....+.. +...+.+..++... -.+.++||++||+|.++..++.+ .++++|.++....... +.+..
T Consensus 18 g~~l~~p~~~~~rpt~-~~vrea~f~~l~~~-~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~ 94 (189)
T TIGR00095 18 GRLLKLPPGGSTRPTT-RVVRELFFNILRPE-IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLAL 94 (189)
T ss_pred CcccCCCCCCCCCCch-HHHHHHHHHHHHHh-cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHH
Confidence 3444455544333222 22223344444311 12458999999999999999987 4788888764443222 33333
Q ss_pred cCCC--eEEEEccccc-CC-C-CC-CCeeEEEeccccccccccHHHHHHHHH--hcccCCeEEEEEeC
Q 006905 255 RGVP--ALIGVLAAER-LP-Y-PS-RAFDMAHCSRCLIPWNQFGGIYLIEVD--RVLRPGGYWILSGP 314 (626)
Q Consensus 255 rg~~--~~~~v~d~~~-Lp-f-~d-~sFDlV~~~~~l~h~~~~~~~~L~Ei~--RvLKPGG~lvis~p 314 (626)
.+.. +.+...|+.. +. + .. ..||+|+.-..+. . ......+..+. .+|+++|.+++...
T Consensus 95 ~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~-~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 95 LKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFF-N-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred hCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCC-C-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 4442 4566666532 22 1 12 2478888766441 1 11234444443 47999999888754
No 307
>PHA03411 putative methyltransferase; Provisional
Probab=97.47 E-value=0.00018 Score=74.80 Aligned_cols=97 Identities=11% Similarity=0.146 Sum_probs=70.2
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC--CccceeeeccccccCCC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP--RTYDLIHADSVFSLYKD 547 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp--~t~Dlih~~~~f~~~~~ 547 (626)
.+|||+|||.|.++..++.+. -..+|+.+|.++.+++.+.++-- +.++ +..+..++ ++||+|-++--|.+...
T Consensus 66 grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v---~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWI---TSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEE---ECchhhhcccCCCcEEEEcCCccccCc
Confidence 479999999999998887641 01378999999999999877521 2222 34455554 78999999888875321
Q ss_pred -------C---------C-CHHHHHHHhhhhccCCcEEEEE
Q 006905 548 -------R---------C-ETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 548 -------~---------c-~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+ + .+...+...-++|+|+|.+++-
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 1 1 1467888889999999988774
No 308
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.45 E-value=0.00066 Score=68.03 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhccCCC--CCCEEEEeCCCCchHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCC
Q 006905 195 DAYIDDIGKLINLNDG--SIRTAIDTGCGVASWGAYLLS-RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPY 271 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~--~~~~VLDIGCGtG~~a~~La~-~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf 271 (626)
.-.++.|.+....... ...++|||||=+......-.. -+|+.+|+.+. ..+ +...|....|.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~-----------~~~----I~qqDFm~rpl 97 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQ-----------HPG----ILQQDFMERPL 97 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCC-----------CCC----ceeeccccCCC
Confidence 3344455544432211 235899999875543322111 15777777442 112 33557666665
Q ss_pred C---CCCeeEEEeccccccccccH--HHHHHHHHhcccCCeE-----EEEEeCCCCcccccccccchhhhhHHHHHHHHH
Q 006905 272 P---SRAFDMAHCSRCLIPWNQFG--GIYLIEVDRVLRPGGY-----WILSGPPINWKKHARGWQRTKEDLNKEQTAIEN 341 (626)
Q Consensus 272 ~---d~sFDlV~~~~~l~h~~~~~--~~~L~Ei~RvLKPGG~-----lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~ 341 (626)
| ++.||+|.|+.+|...++.. +.+++.+.+.|+|+|. |+|+.|..- ..... +-..+.+..
T Consensus 98 p~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C--v~NSR--------y~~~~~l~~ 167 (219)
T PF11968_consen 98 PKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC--VTNSR--------YMTEERLRE 167 (219)
T ss_pred CCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH--hhccc--------ccCHHHHHH
Confidence 3 67899999999995444322 7899999999999999 888866321 11111 111345667
Q ss_pred HHHhhchhhhcc
Q 006905 342 VAKSLCWEKIKE 353 (626)
Q Consensus 342 l~~~l~w~~v~~ 353 (626)
+...+++..+..
T Consensus 168 im~~LGf~~~~~ 179 (219)
T PF11968_consen 168 IMESLGFTRVKY 179 (219)
T ss_pred HHHhCCcEEEEE
Confidence 778888876654
No 309
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.44 E-value=0.0007 Score=69.16 Aligned_cols=105 Identities=20% Similarity=0.309 Sum_probs=71.8
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC---CccceeeeccccccCCC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP---RTYDLIHADSVFSLYKD 547 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp---~t~Dlih~~~~f~~~~~ 547 (626)
-.|-|||||-+-.|.. ...+|..|.+++++.. +|. | .+...| +|.|++.+- +|...
T Consensus 182 ~vIaD~GCGEakiA~~-~~~kV~SfDL~a~~~~-----------V~~-----c-Dm~~vPl~d~svDvaV~C--LSLMg- 240 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASS-ERHKVHSFDLVAVNER-----------VIA-----C-DMRNVPLEDESVDVAVFC--LSLMG- 240 (325)
T ss_pred eEEEecccchhhhhhc-cccceeeeeeecCCCc-----------eee-----c-cccCCcCccCcccEEEee--Hhhhc-
Confidence 3589999999988762 2346888888888654 111 1 223344 999986641 22222
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEcChHH---HHHHHHHHHhCCCeeEEeecC
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRDDVDE---LVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d~~~~---~~~~~~~~~~l~w~~~~~~~e 597 (626)
-++.+.+.|..|||||||.++|.+-..- .....+-+..|..++.-.|.+
T Consensus 241 -tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 241 -TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred -ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 3778999999999999999999865533 333555578888887765544
No 310
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.43 E-value=0.00025 Score=76.83 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+..++|+|||.|....+.+.. ++++++..+........... ..++ ...+...+....||++++||.|.+..+..
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~-~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAK-KAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred cccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHH-HHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 337999999999777766653 66766665543333322221 1122 13346667888999999999999999886
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEE
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
|... ...++.|+.|+++|||+++..
T Consensus 190 ~~~~-~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 190 HAPD-LEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cCCc-HHHHHHHHhcccCCCceEEeH
Confidence 6554 699999999999999999985
No 311
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.00018 Score=72.76 Aligned_cols=100 Identities=16% Similarity=0.269 Sum_probs=76.2
Q ss_pred eEEeccCchhhHhhhhhCCCe-EEEEeccCccCcccHHHHHHhcc------cceeccccccCCCCC---Cccceeeeccc
Q 006905 472 NILDMNAHLGGFAAALIDFPV-WVMNVVPAEAKINTLGVIYERGL------VGTYTNWCEAMSTYP---RTYDLIHADSV 541 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v-~~mnv~~~~~~~~~l~~~~~rgl------i~~~~~~~e~~~~yp---~t~Dlih~~~~ 541 (626)
+||.+|||.|.---=|++..- --+.|..-|-+++.+.+.-++-- -..++|.+..=...| .++|+|.+--+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 799999999987776765421 11357778888888887766654 235556665544444 99999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
||..... .+..+|..+.|+|||||.+++||
T Consensus 154 LSAi~pe-k~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 154 LSAIHPE-KMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EeccChH-HHHHHHHHHHHHhCCCcEEEEee
Confidence 9987743 57889999999999999999997
No 312
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.40 E-value=0.00029 Score=75.29 Aligned_cols=93 Identities=18% Similarity=0.116 Sum_probs=60.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCC-C--Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTY-P--RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~y-p--~t~Dlih~~~~f 542 (626)
-.+|||+|||+|.+++.|++.---.-.|+.+|.++.+++.+.++ |+ ..++..+...... + ..||+|.+..
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~~-- 157 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVTV-- 157 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEECC--
Confidence 35799999999999999986410001377888888888877653 43 1112122332222 2 6799999832
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
....+...+.++|||||.+++-.
T Consensus 158 -------g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 158 -------GVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred -------chHHhHHHHHHhcCCCCEEEEEe
Confidence 33445556788999999998853
No 313
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.40 E-value=0.0004 Score=77.39 Aligned_cols=128 Identities=19% Similarity=0.299 Sum_probs=71.6
Q ss_pred cCCChhhchhhhHHHHH---HHHHHHHhhhhcCCCCC----ceeEEeccCchhhHhhhhhCCC---eEEEEeccCccCcc
Q 006905 436 KGITPEIFQQNSELWKK---RLSYYKTMNNQLGQSGR----YRNILDMNAHLGGFAAALIDFP---VWVMNVVPAEAKIN 505 (626)
Q Consensus 436 ~~~~~~~f~~d~~~w~~---~v~~y~~~~~~~~~~~~----~r~vlD~g~g~G~faa~l~~~~---v~~mnv~~~~~~~~ 505 (626)
...+.|.|+.|.-++.. .|.. .+...+.. .+ ..+|||+|||.|-....-++-+ .-...|.+++.+++
T Consensus 149 ~s~tYe~fE~D~vKY~~Ye~AI~~--al~D~~~~-~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 149 ESQTYEVFEKDPVKYDQYERAIEE--ALKDRVRK-NSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp -HHHHHHHCC-HHHHHHHHHHHHH--HHHHHHTT-S-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred ccccHhhHhcCHHHHHHHHHHHHH--HHHhhhhh-ccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 33478999999854443 3322 22222333 32 3569999999999863332211 01125666666544
Q ss_pred cHHH----HHHhcc---cceeccccccCCCC--CCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 506 TLGV----IYERGL---VGTYTNWCEAMSTY--PRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 506 ~l~~----~~~rgl---i~~~~~~~e~~~~y--p~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
.... +.+.|+ |.++| +..... |.-.|+|.+ -++........++.+|.-.+|.|+|||.+|=
T Consensus 226 A~~~l~~~v~~n~w~~~V~vi~---~d~r~v~lpekvDIIVS-ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 226 AVVTLQKRVNANGWGDKVTVIH---GDMREVELPEKVDIIVS-ELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEE---S-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred HHHHHHHHHHhcCCCCeEEEEe---CcccCCCCCCceeEEEE-eccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 3322 234444 66666 444443 689999997 4444444444778899999999999998763
No 314
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.36 E-value=0.0007 Score=75.50 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=58.6
Q ss_pred CCEEEEeCCCCchHHHHHhh--------CCcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCCCCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLS--------RNIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPYPSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~--------~~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf~d~sFDlV~~ 281 (626)
...|||||||+|.+....++ ..|.+++-++.... ...+....++ -.+.+...|++.+..+. ..|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~-~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVV-TLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHH-HHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHH-HHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 46899999999977654433 26888887663232 1122223444 35777888888877654 8999998
Q ss_pred ccccc-cccccHHHHHHHHHhcccCCeEEE
Q 006905 282 SRCLI-PWNQFGGIYLIEVDRVLRPGGYWI 310 (626)
Q Consensus 282 ~~~l~-h~~~~~~~~L~Ei~RvLKPGG~lv 310 (626)
-..=. ...+-....|....|.|||||.++
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 33210 111122567889999999998775
No 315
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.33 E-value=0.0014 Score=69.29 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=57.3
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPY 271 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf 271 (626)
..++.|.+.+.... +.+|||||||+|.++..|++. .++++|+++..+.....+++ ..+ ..+.+...|+...++
T Consensus 23 ~i~~~Iv~~~~~~~--~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~-~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 23 LVLDKIVEKAAIKP--TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQ-NSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHhcCCCC--cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHH-hcCCCCcEEEEECCHhhhcc
Confidence 34455666554443 458999999999999999886 68889987754443333332 222 246677777766554
Q ss_pred CCCCeeEEEecccc
Q 006905 272 PSRAFDMAHCSRCL 285 (626)
Q Consensus 272 ~d~sFDlV~~~~~l 285 (626)
..||+|+++...
T Consensus 100 --~~~d~VvaNlPY 111 (294)
T PTZ00338 100 --PYFDVCVANVPY 111 (294)
T ss_pred --cccCEEEecCCc
Confidence 368999998755
No 316
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.29 E-value=0.00076 Score=69.74 Aligned_cols=115 Identities=18% Similarity=0.255 Sum_probs=65.2
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHh-hC--CcEEEeCCccchHHHHH--------------HH-HHHcCC---
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLL-SR--NIITMSFAPRDTHEAQV--------------QF-ALERGV--- 257 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La-~~--~V~avdis~~dls~a~i--------------~~-A~erg~--- 257 (626)
+.+.+.+......+.++||||||.-.+-..-+ +. +++..|+++.+..+-.. +. +...|.
T Consensus 44 ~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~ 123 (256)
T PF01234_consen 44 KNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREK 123 (256)
T ss_dssp HHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSG
T ss_pred HHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcch
Confidence 34455554444456799999999864432222 22 78888887744432111 11 000110
Q ss_pred ----------Ce-EEEEccccc-CCCCC-----CCeeEEEeccccccccccH---HHHHHHHHhcccCCeEEEEEe
Q 006905 258 ----------PA-LIGVLAAER-LPYPS-----RAFDMAHCSRCLIPWNQFG---GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 258 ----------~~-~~~v~d~~~-Lpf~d-----~sFDlV~~~~~l~h~~~~~---~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+ .+...|... -|+.. ..||+|++.+|++--..+. ..+++.+.++|||||+|++.+
T Consensus 124 ~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 124 WEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 01 133345433 33433 3599999999997666555 578999999999999999975
No 317
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0013 Score=65.46 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=63.7
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----Cc--EEEeCCccchHHHHHHHHHHc---------------CCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NI--ITMSFAPRDTHEAQVQFALER---------------GVP 258 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V--~avdis~~dls~a~i~~A~er---------------g~~ 258 (626)
.+.++|...-.++.++||+|.|+|.++..++.. +. .+++. .+..++.+.++ ...
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh-----~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEH-----IPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhh-----hHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 344444422223558999999999888776642 33 44443 44444444322 112
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 259 ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 259 ~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+.++|....--+...||.|||.... ....+++...|+|||.+++-.
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 445567765555566789999997533 345677888899999999964
No 318
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.28 E-value=0.001 Score=64.72 Aligned_cols=110 Identities=19% Similarity=0.279 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhc-cCCCCCCEEEEeCCCCchHHHHHhhCC-----cEEEeCCccchHHHHHHHHHHcCCCeEEEEcc--
Q 006905 194 ADAYIDDIGKLIN-LNDGSIRTAIDTGCGVASWGAYLLSRN-----IITMSFAPRDTHEAQVQFALERGVPALIGVLA-- 265 (626)
Q Consensus 194 a~~yi~~L~~ll~-l~~~~~~~VLDIGCGtG~~a~~La~~~-----V~avdis~~dls~a~i~~A~erg~~~~~~v~d-- 265 (626)
+...+.++.+... ...+...++||+||++|.|+..+.++. |+++|+.+.... .+ .....+|
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---------~~--~~~i~~d~~ 73 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---------QN--VSFIQGDIT 73 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----------TT--EEBTTGGGE
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---------cc--eeeeecccc
Confidence 3334445555555 344456799999999999999999874 788888664111 11 1111111
Q ss_pred ----cccC----CCCCCCeeEEEeccccc---cccccH-------HHHHHHHHhcccCCeEEEEEeC
Q 006905 266 ----AERL----PYPSRAFDMAHCSRCLI---PWNQFG-------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 266 ----~~~L----pf~d~sFDlV~~~~~l~---h~~~~~-------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...+ +-....||+|+|-.+.. +...+. ...+.-+...|+|||.|++-..
T Consensus 74 ~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 74 NPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp EEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 1111 11126899999966331 111111 2345556678999999998753
No 319
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.25 E-value=0.0029 Score=66.05 Aligned_cols=140 Identities=21% Similarity=0.316 Sum_probs=90.8
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc---CCCCCCCeeE
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR------NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER---LPYPSRAFDM 278 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~------~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~---Lpf~d~sFDl 278 (626)
+..-+||||.||.|..-...+.. .+...|+++..+. .-.+.++++|.. +.|...|+.. +.--+-..++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~-~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVE-KGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHH-HHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 44568999999999665544432 4667788775444 334456677875 3677776433 2212345789
Q ss_pred EEeccccccccccH--HHHHHHHHhcccCCeEEEEEeCCCCccccc-----------ccccchhhhhHHHHHHHHHHHHh
Q 006905 279 AHCSRCLIPWNQFG--GIYLIEVDRVLRPGGYWILSGPPINWKKHA-----------RGWQRTKEDLNKEQTAIENVAKS 345 (626)
Q Consensus 279 V~~~~~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~-----------~~w~~~~e~l~~~~~~ie~l~~~ 345 (626)
++.+..++-+.++. ...|.-+.+.|.|||++|.++-|.+-..+. ..|.-. +..+.+|+.+...
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR----rRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR----RRSQAEMDQLVEA 288 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE----ecCHHHHHHHHHH
Confidence 99999776666543 457889999999999999998665432211 123211 2235568888888
Q ss_pred hchhhhccc
Q 006905 346 LCWEKIKEK 354 (626)
Q Consensus 346 l~w~~v~~~ 354 (626)
-+++++.+.
T Consensus 289 aGF~K~~q~ 297 (311)
T PF12147_consen 289 AGFEKIDQR 297 (311)
T ss_pred cCCchhhhe
Confidence 888777643
No 320
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.22 E-value=0.0005 Score=68.42 Aligned_cols=128 Identities=16% Similarity=0.264 Sum_probs=74.7
Q ss_pred chhhhHHHHHHHHHHH-HhhhhcCCCCCceeEEeccCchh----hHhhhhhC--C--CeEEEEeccCccCcccHHHHHHh
Q 006905 443 FQQNSELWKKRLSYYK-TMNNQLGQSGRYRNILDMNAHLG----GFAAALID--F--PVWVMNVVPAEAKINTLGVIYER 513 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~-~~~~~~~~~~~~r~vlD~g~g~G----~faa~l~~--~--~v~~mnv~~~~~~~~~l~~~~~r 513 (626)
|--|...|..-.+... .++..... ++.-+|..+||++| +.|..|.+ . .-|-+.|.++|.++..|+.| .+
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~-~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~A-r~ 82 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARP-GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKA-RA 82 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS--S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHH-HH
T ss_pred ccCCHHHHHHHHHHHHHhhccccCC-CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHH-Hh
Confidence 5556666766554433 22322233 46678999999999 45555555 1 23567999999998888875 34
Q ss_pred cccc------------------------------------eeccccccCCCCCCccceeeeccccccCCCCCCHHHHHHH
Q 006905 514 GLVG------------------------------------TYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLE 557 (626)
Q Consensus 514 gli~------------------------------------~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E 557 (626)
|..+ ..|+.++ ....+..||+|-|-.||-+.... ....++.-
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~-~~~~vl~~ 160 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPE-TQQRVLRR 160 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HH-HHHHHHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHH-HHHHHHHH
Confidence 4421 2344444 22233999999999999987642 44779999
Q ss_pred hhhhccCCcEEEEEcCh
Q 006905 558 MDRILRPEGGVIFRDDV 574 (626)
Q Consensus 558 ~dRiLRPgG~~i~~d~~ 574 (626)
+.+.|+|||++++....
T Consensus 161 l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HGGGEEEEEEEEE-TT-
T ss_pred HHHHcCCCCEEEEecCc
Confidence 99999999999997554
No 321
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.21 E-value=0.00057 Score=65.91 Aligned_cols=95 Identities=8% Similarity=0.048 Sum_probs=64.3
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCCCC---Cccceeeeccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMSTYP---RTYDLIHADSV 541 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~yp---~t~Dlih~~~~ 541 (626)
.-.+|||+|||.|.++..|++++. .|+.+|.++.+++.+.++-- +.+++ .++..++ ..||.|-++--
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~---~D~~~~~~~~~~~d~vi~n~P 86 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIH---GDALKFDLPKLQPYKVVGNLP 86 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEE---CchhcCCccccCCCEEEECCC
Confidence 345899999999999999999853 78999999889998877631 33444 4444443 46899887655
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
|.... ..+..++.+. -+.++|.+++...
T Consensus 87 y~~~~--~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 87 YNIST--PILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred cccHH--HHHHHHHhcC--CCcceEEEEEEHH
Confidence 54321 2333444332 2569999988743
No 322
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.21 E-value=0.0012 Score=57.83 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=61.3
Q ss_pred EEeccCchhh--HhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceec-cccccCCCCCC--ccceeeeccc
Q 006905 473 ILDMNAHLGG--FAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYT-NWCEAMSTYPR--TYDLIHADSV 541 (626)
Q Consensus 473 vlD~g~g~G~--faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~-~~~e~~~~yp~--t~Dlih~~~~ 541 (626)
++|+|||.|. +.+.+...+. .++.+|.+..++.....+.. +.... +.......++. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGA---YVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCc---eEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 4555555432 34447777777777444431 12222 22221233333 89999 6554
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
..+... ...++.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 444443 688999999999999999998654
No 323
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.19 E-value=0.00095 Score=73.06 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=65.6
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
.+|||++||+|.++..++.. .|+++|+++..+..+. +.++.+++. ..+...|+..+....+.||+|+...
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 47999999999999998764 4889998775443322 333444554 3355566544321145799999854
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+ ..+..++....+.+++||++.++.
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 2 223678888788899999999984
No 324
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.18 E-value=0.00033 Score=71.18 Aligned_cols=96 Identities=7% Similarity=0.034 Sum_probs=75.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-cc--------------ceeccccccCCCCC-----
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-LV--------------GTYTNWCEAMSTYP----- 530 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-li--------------~~~~~~~e~~~~yp----- 530 (626)
..||+.|||-|-=+.+|+++|. .|+++|.++..++.++++. +. +.+.-+|.+|-.++
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 5799999999999999999998 7999999988888766631 10 11223466676664
Q ss_pred -CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 531 -RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 531 -~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
+.||+|.=...|..+.. -.......-|.++|||||.+++
T Consensus 122 ~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred cCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEE
Confidence 47999998888888764 2557899999999999999877
No 325
>PRK03612 spermidine synthase; Provisional
Probab=97.18 E-value=0.0014 Score=74.64 Aligned_cols=123 Identities=14% Similarity=0.169 Sum_probs=78.3
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-c------------cceec-cccccCCCCCCccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-L------------VGTYT-NWCEAMSTYPRTYD 534 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-l------------i~~~~-~~~e~~~~yp~t~D 534 (626)
+-++|||+|||.|+.+..+++++- +..|+-+|.++++++.+.+.- + +.+++ |--+-+...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 467899999999999999887742 247788888888999988731 1 11222 11111123468999
Q ss_pred eeeeccccccCCC--CCCHHHHHHHhhhhccCCcEEEEEc-----ChHHHHHHHHHHHhCCCeeE
Q 006905 535 LIHADSVFSLYKD--RCETEDILLEMDRILRPEGGVIFRD-----DVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 535 lih~~~~f~~~~~--~c~~~~~l~E~dRiLRPgG~~i~~d-----~~~~~~~~~~~~~~l~w~~~ 592 (626)
+|-++.-...... +=--+.++.++.|.|||||.+++.. ..+....+.+.+++....+.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 9998733221110 0001357889999999999999853 23445566666666545443
No 326
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.17 E-value=0.00054 Score=73.50 Aligned_cols=129 Identities=16% Similarity=0.264 Sum_probs=78.1
Q ss_pred HHHHHHHH--HHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-----------
Q 006905 448 ELWKKRLS--YYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----------- 514 (626)
Q Consensus 448 ~~w~~~v~--~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----------- 514 (626)
..|.+.+- .|.+. +.....-.+|||||||=||=-.-....++ -.++++|.+...++-+.+|=
T Consensus 42 NNwvKs~LI~~~~~~---~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~ 116 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKK---VKQNRPGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQ 116 (331)
T ss_dssp HHHHHHHHHHHHCHC---CCCTTTT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HT
T ss_pred hHHHHHHHHHHHHHh---hhccCCCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhcccccccc
Confidence 55777653 33332 22213578899999999984444444444 36899999988999888887
Q ss_pred ----ccceeccccccCCC-----CC---CccceeeeccccccC-CCCCCHHHHHHHhhhhccCCcEEEEEc--ChHHHHH
Q 006905 515 ----LVGTYTNWCEAMST-----YP---RTYDLIHADSVFSLY-KDRCETEDILLEMDRILRPEGGVIFRD--DVDELVK 579 (626)
Q Consensus 515 ----li~~~~~~~e~~~~-----yp---~t~Dlih~~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~i~~d--~~~~~~~ 579 (626)
.....+ .+..|.. ++ +.||+|=|.-.|++. .+.-....+|.-+-.-|||||+||.+- ...++.+
T Consensus 117 ~~~~f~a~f~-~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~ 195 (331)
T PF03291_consen 117 YRFDFIAEFI-AADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKR 195 (331)
T ss_dssp SEECCEEEEE-ESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCC
T ss_pred ccccchhhee-ccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHH
Confidence 111111 1122222 33 599999998877753 333345569999999999999999983 3334444
Q ss_pred HHH
Q 006905 580 VKR 582 (626)
Q Consensus 580 ~~~ 582 (626)
+++
T Consensus 196 l~~ 198 (331)
T PF03291_consen 196 LRE 198 (331)
T ss_dssp HHC
T ss_pred HHh
Confidence 444
No 327
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.16 E-value=0.0017 Score=66.29 Aligned_cols=130 Identities=11% Similarity=0.113 Sum_probs=77.6
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCC----C-CCccce
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMST----Y-PRTYDL 535 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~----y-p~t~Dl 535 (626)
-++|||+|||+|.-+.+|+.. +- .-.|+.+|.++..+.++.+. |+ |.+++ +..+.+.. . ..+||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 678999999999755444321 10 11578888887777766543 43 33333 22232222 2 268999
Q ss_pred eeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc---------Ch--------HHHHHHHHHHHhC----CCeeEEe
Q 006905 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD---------DV--------DELVKVKRIIDAL----KWQSQIV 594 (626)
Q Consensus 536 ih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d---------~~--------~~~~~~~~~~~~l----~w~~~~~ 594 (626)
|..+.- +-....++.++-|.|||||.+++-+ .. .....|+++.+.+ +|.+.+.
T Consensus 148 VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~l 221 (234)
T PLN02781 148 AFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQI 221 (234)
T ss_pred EEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 988321 1245678888899999999998732 10 1234454544433 5555555
Q ss_pred ecCCCCCCcceEEEEEec
Q 006905 595 DHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 595 ~~e~~~~~~e~~l~~~K~ 612 (626)
-. .+.+++++|.
T Consensus 222 p~------gdG~~i~~k~ 233 (234)
T PLN02781 222 SI------GDGVTLCRRL 233 (234)
T ss_pred Ee------CCccEEEEEe
Confidence 32 3667888874
No 328
>PRK04148 hypothetical protein; Provisional
Probab=97.15 E-value=0.0029 Score=59.17 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=72.9
Q ss_pred CceeEEeccCchhh-HhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccCCC
Q 006905 469 RYRNILDMNAHLGG-FAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 469 ~~r~vlD~g~g~G~-faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
+-+.|||+|||+|. +|..|++.+. +|+.+|.+++.++-+.++++-.+..|+-+.=...=+.+|+|-+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys--------- 83 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS--------- 83 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE---------
Confidence 34679999999996 9999999987 8999999999999999998755555433211111178899998
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEeecC
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e 597 (626)
+|-+.+++..+.++++++.=++.+.-..
T Consensus 84 ----------------------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 84 ----------------------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred ----------------------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4556778888999999998888876544
No 329
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0035 Score=61.15 Aligned_cols=101 Identities=18% Similarity=0.207 Sum_probs=69.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC-C----cEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-N----IITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-~----V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
...+||||||+|.....|++. + ..++|+.|.. .++..+.|+.++..+..+..|...- ...++.|+++.+....
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A-~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEA-LEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHH-HHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 568999999999999988886 2 5678887743 3445566766776655555553221 1238899999876553
Q ss_pred cccccH--------------------HHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFG--------------------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~--------------------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+-.+.+ ++++..+..+|.|.|.|++..-
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 322111 2677888899999999999754
No 330
>PHA03412 putative methyltransferase; Provisional
Probab=97.13 E-value=0.00095 Score=68.13 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=65.1
Q ss_pred eeEEeccCchhhHhhhhhCCC--eEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC--CccceeeeccccccCC
Q 006905 471 RNILDMNAHLGGFAAALIDFP--VWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP--RTYDLIHADSVFSLYK 546 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~--v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp--~t~Dlih~~~~f~~~~ 546 (626)
.+|||+|||+|.++.+++++- .-..+|+.+|..++++..+.+.-. . .+-.+..+..++ .+||+|-++==|....
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-E-ATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-C-CEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 479999999999999887530 012389999999889988885531 1 122234555443 6899999987766322
Q ss_pred -----CC---CCHH-HHHHHhhhhccCCcEEEE
Q 006905 547 -----DR---CETE-DILLEMDRILRPEGGVIF 570 (626)
Q Consensus 547 -----~~---c~~~-~~l~E~dRiLRPgG~~i~ 570 (626)
.+ ..+. .++...-|+||||+. |+
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 11 1333 377777888888886 55
No 331
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.12 E-value=0.0026 Score=62.35 Aligned_cols=100 Identities=21% Similarity=0.200 Sum_probs=64.2
Q ss_pred CCEEEEeCCCCchHHHHHhh--CC-----------cEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCe
Q 006905 212 IRTAIDTGCGVASWGAYLLS--RN-----------IITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAF 276 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~--~~-----------V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sF 276 (626)
+..+||--||+|++....+. .+ +.+.|+++..+..+..+ +...++. +.+...|+..+++.++++
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~~D~~~l~~~~~~~ 107 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQWDARELPLPDGSV 107 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE--GGGGGGTTSBS
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEecchhhcccccCCC
Confidence 45899999999988865433 23 45999988766544443 3344543 667778899999888899
Q ss_pred eEEEecccccccccc---H----HHHHHHHHhcccCCeEEEEE
Q 006905 277 DMAHCSRCLIPWNQF---G----GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 277 DlV~~~~~l~h~~~~---~----~~~L~Ei~RvLKPGG~lvis 312 (626)
|.|+++.-.-.-... . ..++.++.|+|++...+++.
T Consensus 108 d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 108 DAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp CEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999998744211111 1 36789999999995555555
No 332
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0025 Score=70.49 Aligned_cols=99 Identities=24% Similarity=0.302 Sum_probs=76.8
Q ss_pred EEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccccc
Q 006905 214 TAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQ 290 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~ 290 (626)
++|-+|||+-.+...+.+- .++.+|+++..+...++..+.++ ....+...|...+.|++++||+|+.-..+.+...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-PEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC-cceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999999888885 67888888776665554444222 2356677788999999999999999887766654
Q ss_pred cH---------HHHHHHHHhcccCCeEEEEEe
Q 006905 291 FG---------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 291 ~~---------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+. ...+.++.|+|+|||.++...
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 43 246799999999999988754
No 333
>PRK04148 hypothetical protein; Provisional
Probab=97.09 E-value=0.0024 Score=59.67 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=56.6
Q ss_pred CCEEEEeCCCCch-HHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC-CCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVAS-WGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP-SRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~-~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~-d~sFDlV~~~~~l~h 287 (626)
+.++||||||.|. ++..|++. .|+++|+++ ..++.+++++.. ..+.|...-++. -..+|+|.+.+.-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~-----~aV~~a~~~~~~--~v~dDlf~p~~~~y~~a~liysirpp-- 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINE-----KAVEKAKKLGLN--AFVDDLFNPNLEIYKNAKLIYSIRPP-- 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHhCCe--EEECcCCCCCHHHHhcCCEEEEeCCC--
Confidence 4689999999995 88899887 466666644 567777777753 444454443322 3569999997743
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEE
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.+....+.++.+.+ |.-++|.
T Consensus 88 --~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 88 --RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred --HHHHHHHHHHHHHc--CCCEEEE
Confidence 22345555555544 4456654
No 334
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.06 E-value=0.005 Score=60.75 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=59.6
Q ss_pred EEEEeCCCCchHHHH----HhhCCcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 214 TAIDTGCGVASWGAY----LLSRNIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~----La~~~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
+++|||+|.|.-+.- +.+..++-+|-...-.. .....+.+-+++ +.+....++. +.....||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 799999999944433 33346777777553221 222334455766 5555555666 4456789999996543
Q ss_pred cccHHHHHHHHHhcccCCeEEEEE
Q 006905 289 NQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 289 ~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
....++.-+.+.|++||.+++-
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 3467888899999999999886
No 335
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.06 E-value=0.0022 Score=64.89 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=85.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH-hcc------cce--------eccccccCCCCC----
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE-RGL------VGT--------YTNWCEAMSTYP---- 530 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~-rgl------i~~--------~~~~~e~~~~yp---- 530 (626)
-..||+-|||.|--+.+|+++|. +|+++|.++..++.+++ +++ ++. +.-+|.+|-.++
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 45799999999999999999996 89999999888887754 443 111 122466776665
Q ss_pred CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE-E-cC--------h--HHHHHHHHHHHhCCCeeEEee
Q 006905 531 RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF-R-DD--------V--DELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~-~-d~--------~--~~~~~~~~~~~~l~w~~~~~~ 595 (626)
+.||+|.=...|..+.. ...+....-|.++|+|||.+++ + +- . -....|++++. -.|++....
T Consensus 115 g~fD~iyDr~~l~Alpp-~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPP-EMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp HSEEEEEECSSTTTS-G-GGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred CCceEEEEecccccCCH-HHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 46999998777876654 4668899999999999999333 2 10 1 12567777777 777877543
No 336
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.05 E-value=0.0028 Score=68.91 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=62.2
Q ss_pred CEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc-CC-CC--------------C
Q 006905 213 RTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER-LP-YP--------------S 273 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~-Lp-f~--------------d 273 (626)
.++||++||+|.++..|++. .|+++|+++..+..+. +.+..+++ .+.+...|+.. ++ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 46999999999999988875 6899999886554433 33444555 35677667543 21 10 1
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
..||+|+..... ..-...++..+.+ |++.++++..|
T Consensus 287 ~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 287 YNFSTIFVDPPR---AGLDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred CCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEEEeCH
Confidence 258999986643 2212445555543 78899998653
No 337
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.04 E-value=0.0031 Score=68.38 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=61.1
Q ss_pred EEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccC-C-------C---C-----CC
Q 006905 214 TAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERL-P-------Y---P-----SR 274 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~L-p-------f---~-----d~ 274 (626)
++||++||+|.++..|++. .|+++|+++.++..+. +.+..+++ .+.+...|+..+ + + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 6999999999999988875 7899999886655433 33444555 356666665432 1 1 0 12
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
.||+|+....- ..-...++..+. +|++.++++..|
T Consensus 279 ~~d~v~lDPPR---~G~~~~~l~~l~---~~~~ivYvsC~p 313 (353)
T TIGR02143 279 NCSTIFVDPPR---AGLDPDTCKLVQ---AYERILYISCNP 313 (353)
T ss_pred CCCEEEECCCC---CCCcHHHHHHHH---cCCcEEEEEcCH
Confidence 38999886632 111144555544 489999998653
No 338
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.04 E-value=0.0027 Score=65.45 Aligned_cols=96 Identities=13% Similarity=0.029 Sum_probs=63.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccc-ccCCC------CCCCee
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAA-ERLPY------PSRAFD 277 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~-~~Lpf------~d~sFD 277 (626)
.++||+||+++|.-+..|+.. .+++++..+.... .+.+.-.+.|+ .+.+..+++ +.|+- ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~-~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYE-LGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 458999999999888777753 5888888663332 22223334454 355555653 22331 136899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 278 MAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 278 lV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
+|+.-. .......++..+.+.|+|||.+++.
T Consensus 159 ~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 159 FIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 998744 2333367888889999999998885
No 339
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.04 E-value=0.0028 Score=63.33 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=73.4
Q ss_pred ccCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhh--C--CcEEEeCCccchHHHHHHH
Q 006905 176 YEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS--R--NIITMSFAPRDTHEAQVQF 251 (626)
Q Consensus 176 ~~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~--~--~V~avdis~~dls~a~i~~ 251 (626)
..|-.|.+.-...+|..+-..--.++.+.+ .+ +.+|||+-||.|.|+..+++ + .|.++|+.|.. -+.+.+.
T Consensus 70 E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v--~~--~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a-~~~L~~N 144 (200)
T PF02475_consen 70 ENGIRFKVDLSKVYFSPRLSTERRRIANLV--KP--GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDA-VEYLKEN 144 (200)
T ss_dssp ETTEEEEEETTTS---GGGHHHHHHHHTC----T--T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHH-HHHHHHH
T ss_pred eCCEEEEEccceEEEccccHHHHHHHHhcC--Cc--ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHH-HHHHHHH
Confidence 344445554445666665544444555443 23 45999999999999999888 3 58999998843 3445555
Q ss_pred HHHcCCC--eEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEE
Q 006905 252 ALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWI 310 (626)
Q Consensus 252 A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lv 310 (626)
++.+++. +....+|...+.- .+.||-|+++.. ..-..+|..+.+++|+||.+-
T Consensus 145 i~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp-----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 145 IRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP-----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-----SSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-----HHHHHHHHHHHHHhcCCcEEE
Confidence 5556654 4556677766654 788999988652 222468889999999999864
No 340
>PLN02366 spermidine synthase
Probab=97.02 E-value=0.002 Score=68.57 Aligned_cols=103 Identities=21% Similarity=0.205 Sum_probs=65.8
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh------cc----cceec-cccccCCCCC-Cccce
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER------GL----VGTYT-NWCEAMSTYP-RTYDL 535 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r------gl----i~~~~-~~~e~~~~yp-~t~Dl 535 (626)
...++|||+|||.|+.++++++.+ -+.+|+-+|..+.+++++.+. ++ +.+++ |--+-+...| +.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 347889999999999999999874 235666667666788877664 11 12222 1000122344 78999
Q ss_pred eeeccccccCCCC-CCHHHHHHHhhhhccCCcEEEEE
Q 006905 536 IHADSVFSLYKDR-CETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 536 ih~~~~f~~~~~~-c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
|-++......... ---..++..+.|.|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9885432221110 01146788999999999999873
No 341
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.005 Score=61.52 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER 268 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~ 268 (626)
+..-+.+|.+-..+-. ++.+|+|||+..|+|+..++++ .|+++|+.|.+... + +.+.++|...
T Consensus 29 Aa~KL~el~~k~~i~~-~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---------~--V~~iq~d~~~ 96 (205)
T COG0293 29 AAYKLLELNEKFKLFK-PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---------G--VIFLQGDITD 96 (205)
T ss_pred HHHHHHHHHHhcCeec-CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---------C--ceEEeeeccC
Confidence 3334445554443222 2458999999999999998886 38999998865532 2 4555555433
Q ss_pred CC--------CCCCCeeEEEecccc--------ccccccH--HHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LP--------YPSRAFDMAHCSRCL--------IPWNQFG--GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lp--------f~d~sFDlV~~~~~l--------~h~~~~~--~~~L~Ei~RvLKPGG~lvis~p 314 (626)
-+ +....+|+|+|-.+- .|..... ..++.-...+|+|||.|++...
T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 22 234457999974332 1221111 3456667789999999999753
No 342
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.01 E-value=0.0029 Score=70.29 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=74.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCC---Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYP---RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp---~t~Dlih~~ 539 (626)
-.+|||+|||+|.++..|++..- .|+.+|.++.+++.+.+. |+ +.+++ |..+.+..++ .+||+|..+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 35799999999999999998743 689999998999877663 33 23333 3332223332 579988762
Q ss_pred cccccCCCCCC-HHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE
Q 006905 540 SVFSLYKDRCE-TEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 540 ~~f~~~~~~c~-~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
-- |-. ...++.++.+ |+|+|.++++-+...+.+-...+..-.|++.
T Consensus 370 PP------r~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 370 PP------RKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred cC------CCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 21 212 3567777666 8999999998666655444444445557654
No 343
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.97 E-value=0.0067 Score=67.68 Aligned_cols=129 Identities=19% Similarity=0.258 Sum_probs=81.2
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCC--CC-Cccceeeecc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMST--YP-RTYDLIHADS 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~--yp-~t~Dlih~~~ 540 (626)
..|||+|||+|.++..|++... .|+.+|.++.++..+.+. |+ +..++ |+-+.+.. ++ .+||+|.++
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d- 374 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD- 374 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC-
Confidence 5799999999999999998853 789999999999987764 33 22322 33333322 33 679998762
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCCCeeE---EeecCCCCCCcceEEEEE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALKWQSQ---IVDHEDGPLEREKLLFAV 610 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~---~~~~e~~~~~~e~~l~~~ 610 (626)
. .|..+..++..+.+ |+|++.++++ ++...-..+..+.+ -.|++. .+|.=.....=|-|.+.+
T Consensus 375 ----P-Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~HvE~v~lL~ 441 (443)
T PRK13168 375 ----P-PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHVESMALFE 441 (443)
T ss_pred ----c-CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcEEEEEEEE
Confidence 1 23344566666666 6999999998 44444555555543 246654 334333222335555444
No 344
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.95 E-value=0.0066 Score=63.77 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=66.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC---------CCeEEEEccccc-CCCCC
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERG---------VPALIGVLAAER-LPYPS 273 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg---------~~~~~~v~d~~~-Lpf~d 273 (626)
..+..++||-||-|.|..+..+++. .++.+++++ ..++.+++.- ..+.+...|... +.-..
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~-----~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP-----AVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH-----HHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 3344579999999999999999987 677888755 4555555431 123444445322 23223
Q ss_pred CCeeEEEeccccccccc----cHHHHHHHHHhcccCCeEEEEEe
Q 006905 274 RAFDMAHCSRCLIPWNQ----FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~----~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+||+|++--.= +... ....+++.+.|.|+++|.++...
T Consensus 148 ~~fDvIi~D~td-p~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 148 EKFDVIIVDSTD-PVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CcCCEEEEcCCC-CCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 489999974321 2101 01689999999999999999973
No 345
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.94 E-value=0.0026 Score=69.97 Aligned_cols=123 Identities=17% Similarity=0.145 Sum_probs=77.3
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc----cceec-cccccCCCC---CCccceeee
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL----VGTYT-NWCEAMSTY---PRTYDLIHA 538 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl----i~~~~-~~~e~~~~y---p~t~Dlih~ 538 (626)
.+|||+|||+|+|+.+.+..+. -.|+.+|.++.+++.+.+. |+ +.+++ |..+.+..+ .++||+|-+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 5799999999999876555543 2688889998898876543 33 11222 222211122 258999998
Q ss_pred cccc-ccCC-----CCCCHHHHHHHhhhhccCCcEEEEEcC------hHHHHHHHHHHHhCCCeeEEee
Q 006905 539 DSVF-SLYK-----DRCETEDILLEMDRILRPEGGVIFRDD------VDELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 539 ~~~f-~~~~-----~~c~~~~~l~E~dRiLRPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~~ 595 (626)
+-=+ .... ...++.+++.-.-++|+|||.+++... .+..+.+.+-+..-..+.++..
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 6332 1110 012455666677899999999998422 2356666666776666766553
No 346
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.90 E-value=0.0074 Score=67.75 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=67.7
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCe-EEEEcccccCC-CCCCCeeEEE--
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPA-LIGVLAAERLP-YPSRAFDMAH-- 280 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~-~~~v~d~~~Lp-f~d~sFDlV~-- 280 (626)
.++.+|||+++|.|.=+.++++. .+++.|+++.-+. ...+...+.|+.. .+...|...++ ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~-~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVK-VLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 34569999999999777777664 4788888774333 3334444557654 44445555543 2245799999
Q ss_pred --ecccc--c-------cccc--------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 281 --CSRCL--I-------PWNQ--------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 281 --~~~~l--~-------h~~~--------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+..- . .|.. -+..+|..+.+.|||||+++.++-
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 54321 0 1211 113688999999999999999864
No 347
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.88 E-value=0.0016 Score=70.71 Aligned_cols=120 Identities=19% Similarity=0.251 Sum_probs=77.8
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccc
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNW 522 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~ 522 (626)
|.++-..|.+ .++|..+...+.+ +. -++|+|||+|+...+.+.-.. -++..++.+...+..+-+.-.-..+|+-
T Consensus 88 ~~~~~~~~~~-~~~~~~l~~~~~~-~~--~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k 161 (364)
T KOG1269|consen 88 GNSNEMFWIR-HEGIVALRESCFP-GS--KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNK 161 (364)
T ss_pred hhHHHHHHHh-hcchHHHhhcCcc-cc--cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 4444455654 4556655555666 44 688999999999998876532 2567777764444443333321112211
Q ss_pred ccc----C--CCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 523 CEA----M--STYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 523 ~e~----~--~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
|.. | ..++ ++||.+-+..+-.|.+ +...++.|+.|||+|||++|.-
T Consensus 162 ~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~---~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 162 CNFVVADFGKMPFEDNTFDGVRFLEVVCHAP---DLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cceehhhhhcCCCCccccCcEEEEeecccCC---cHHHHHHHHhcccCCCceEEeH
Confidence 111 1 2344 9999999977777777 4588999999999999999984
No 348
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.87 E-value=0.0041 Score=61.27 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=73.4
Q ss_pred cCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFAL 253 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~ 253 (626)
.|..+..|.+...= ...+..-+.+-.++....-.+.++||+-||+|.++...+.+ .|+.+|.++.... ...+...
T Consensus 9 kgr~l~~p~~~~~R-PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~-~i~~N~~ 86 (183)
T PF03602_consen 9 KGRKLKTPKGDNTR-PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIK-IIKKNLE 86 (183)
T ss_dssp TT-EEE-TT--TS--SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHH-HHHHHHH
T ss_pred CCCEecCCCCCCcC-CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHH-HHHHHHH
Confidence 45556666543322 23334444555555422123568999999999999999988 4777777663332 2222333
Q ss_pred HcCCC--eEEEEccc-ccCC---CCCCCeeEEEeccccccccccH--HHHHHHHH--hcccCCeEEEEEeC
Q 006905 254 ERGVP--ALIGVLAA-ERLP---YPSRAFDMAHCSRCLIPWNQFG--GIYLIEVD--RVLRPGGYWILSGP 314 (626)
Q Consensus 254 erg~~--~~~~v~d~-~~Lp---f~d~sFDlV~~~~~l~h~~~~~--~~~L~Ei~--RvLKPGG~lvis~p 314 (626)
.-+.. ..+...|+ ..++ .....||+|++-.. +.... ..++..+. .+|+++|.+++...
T Consensus 87 ~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPP---Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 87 KLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPP---YAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--S---TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCC---cccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 33432 45555552 2222 24678999999774 33332 55666666 79999999999854
No 349
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.87 E-value=0.0026 Score=64.72 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=75.8
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHH----HHHHhcc--cceecccc-ccCCCCC--Cccceeeeccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG----VIYERGL--VGTYTNWC-EAMSTYP--RTYDLIHADSV 541 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~----~~~~rgl--i~~~~~~~-e~~~~yp--~t~Dlih~~~~ 541 (626)
..+|++|||.|.|-..||+++= -.|+++++...+-+. .+-+.|+ +.++..=+ +-+..++ ++.|-|+. .
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--N 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--E
Confidence 4799999999999999998732 127777777655444 5556666 44443222 2233344 49998886 5
Q ss_pred cc-------cCCCCCCHHHHHHHhhhhccCCcEEEE-EcChHHHHH-HHHHHHh
Q 006905 542 FS-------LYKDRCETEDILLEMDRILRPEGGVIF-RDDVDELVK-VKRIIDA 586 (626)
Q Consensus 542 f~-------~~~~~c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~-~~~~~~~ 586 (626)
|+ |.+.|=--+..|.++.|+|+|||.+.+ ||..+..+. ++.....
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 66 334443445799999999999999999 566665555 5555444
No 350
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.85 E-value=0.0036 Score=66.19 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhh-----------CCcEEEeCCccchHHHHHHHHHHcCCC---eE
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS-----------RNIITMSFAPRDTHEAQVQFALERGVP---AL 260 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~-----------~~V~avdis~~dls~a~i~~A~erg~~---~~ 260 (626)
....+.+.+++... .+.+|||-+||+|.|...+.+ ..+.+.|+++....-+..+... ++.. ..
T Consensus 32 ~~i~~l~~~~~~~~--~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~ 108 (311)
T PF02384_consen 32 REIVDLMVKLLNPK--KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNIN 108 (311)
T ss_dssp HHHHHHHHHHHTT---TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCE
T ss_pred HHHHHHHHhhhhcc--ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccccc
Confidence 44556667776433 345899999999998877655 2577888866444333333332 2322 23
Q ss_pred EEEcccccCC-CC-CCCeeEEEeccccccc--cc------------------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 261 IGVLAAERLP-YP-SRAFDMAHCSRCLIPW--NQ------------------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 261 ~~v~d~~~Lp-f~-d~sFDlV~~~~~l~h~--~~------------------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+...|....+ +. ...||+|+++..+... .. ....++..+.+.|++||.+++..|
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 4555543333 22 4789999997655322 10 012578889999999999988865
No 351
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.81 E-value=0.0056 Score=60.39 Aligned_cols=135 Identities=20% Similarity=0.291 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhh--hhhCCCeEEEEeccCccC---cccHH-HHHHhcc--c
Q 006905 445 QNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAA--ALIDFPVWVMNVVPAEAK---INTLG-VIYERGL--V 516 (626)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa--~l~~~~v~~mnv~~~~~~---~~~l~-~~~~rgl--i 516 (626)
+..+.|.+|+-.-...++.+.. ... +++|+|+|-|-=|- +++.... +|+-+|.. .+.|+ ++.+=|| +
T Consensus 26 ~~~~~~~~Hi~DSL~~~~~~~~-~~~-~~lDiGSGaGfPGipLaI~~p~~---~~~LvEs~~KK~~FL~~~~~~L~L~nv 100 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLPFLPD-FGK-KVLDIGSGAGFPGIPLAIARPDL---QVTLVESVGKKVAFLKEVVRELGLSNV 100 (184)
T ss_dssp SHHHHHHHHHHHHHGGGGCS-C-CCS-EEEEETSTTTTTHHHHHHH-TTS---EEEEEESSHHHHHHHHHHHHHHT-SSE
T ss_pred CHHHHHHHHHHHHHHhhhhhcc-CCc-eEEecCCCCCChhHHHHHhCCCC---cEEEEeCCchHHHHHHHHHHHhCCCCE
Confidence 4458899998876666665555 222 69999999773332 3333333 23333433 22333 4445565 3
Q ss_pred ceeccccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh---HHHHHHHHHHHhCCCeeE
Q 006905 517 GTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV---DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 517 ~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~---~~~~~~~~~~~~l~w~~~ 592 (626)
.++|.-.|. ..++..||+|-| .+-+.+..++.-+.+.|+|||.+++--.. +.+...+...+.+.++..
T Consensus 101 ~v~~~R~E~-~~~~~~fd~v~a-------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 101 EVINGRAEE-PEYRESFDVVTA-------RAVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp EEEES-HHH-TTTTT-EEEEEE-------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred EEEEeeecc-cccCCCccEEEe-------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 455554444 347799999998 34467777888889999999999997544 455566666666666654
No 352
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.81 E-value=0.00062 Score=68.43 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=53.4
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC--Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP--RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp--~t~Dlih~~ 539 (626)
--+|||+|||+|-++|.|+.. ++ -.|+.++..+...+.+.++ |+ +.+.+. .....+| ..||.||+.
T Consensus 73 g~~VLeIGtGsGY~aAlla~lvg~~--g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g--dg~~g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLAHLVGPV--GRVVSVERDPELAERARRNLARLGIDNVEVVVG--DGSEGWPEEAPFDRIIVT 148 (209)
T ss_dssp T-EEEEES-TTSHHHHHHHHHHSTT--EEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES---GGGTTGGG-SEEEEEES
T ss_pred CCEEEEecCCCcHHHHHHHHhcCcc--ceEEEECccHHHHHHHHHHHHHhccCceeEEEc--chhhccccCCCcCEEEEe
Confidence 457999999999999888753 12 1356777765666655444 32 233442 2234455 679999994
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
... +.+-.++-+-|||||.+|+-
T Consensus 149 ~a~---------~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 149 AAV---------PEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp SBB---------SS--HHHHHTEEEEEEEEEE
T ss_pred ecc---------chHHHHHHHhcCCCcEEEEE
Confidence 433 22334445569999999984
No 353
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.76 E-value=0.0058 Score=62.95 Aligned_cols=118 Identities=16% Similarity=0.113 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc----CCCeEEEEccc
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER----GVPALIGVLAA 266 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er----g~~~~~~v~d~ 266 (626)
..|.+.|...........++||=||-|.|..+..+++. .++++++++..+..+..-+.... .....+...|.
T Consensus 60 ~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg 139 (246)
T PF01564_consen 60 FIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG 139 (246)
T ss_dssp HHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred HHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence 34555554433333335679999999999999999886 57888886643332221122111 23456666664
Q ss_pred cc-CCCCCC-CeeEEEecccccccccc----HHHHHHHHHhcccCCeEEEEEe
Q 006905 267 ER-LPYPSR-AFDMAHCSRCLIPWNQF----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 267 ~~-Lpf~d~-sFDlV~~~~~l~h~~~~----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.. +.-..+ .||+|+.-..- +.... ...+++.+.++|+|||.+++..
T Consensus 140 ~~~l~~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 140 RKFLKETQEEKYDVIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHTSSST-EEEEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhccCCcccEEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 32 222233 89999973322 21111 1689999999999999999964
No 354
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=96.72 E-value=0.0043 Score=60.57 Aligned_cols=115 Identities=11% Similarity=0.140 Sum_probs=75.0
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHH----HHHhcc---cceec-cccccCCCCCCccceeeeccccc
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGV----IYERGL---VGTYT-NWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~----~~~rgl---i~~~~-~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
+|||+|||-|.+=..|++.+.- --++++|-++..++. +-.+|+ |.... |.-.. ...+.-||+||--+-+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 8999999999999999988642 227888888777763 344555 22211 21111 22368899988655544
Q ss_pred ---cCCC--CCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCC
Q 006905 544 ---LYKD--RCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALK 588 (626)
Q Consensus 544 ---~~~~--~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~ 588 (626)
...+ ...+.-.+--++++|+|||.|+|+.-.-..++|.+......
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFN 197 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCC
Confidence 2211 11224467788999999999999976655566666555444
No 355
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.62 E-value=0.011 Score=63.02 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=78.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCC----CCccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTY----PRTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~y----p~t~Dlih~~~~f 542 (626)
..|||+|||.|.|+..|++++. .|+++|.++.+++.+.+. |+ ...+-.+.....+ ...||+|..+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d--- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN--- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC---
Confidence 5799999999999999999764 799999999999877654 33 1111122222222 2579999885
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcChHH-HHHHHHHHHhCCCeeE---EeecCCCCCCcceEEEEEe
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDDVDE-LVKVKRIIDALKWQSQ---IVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~-~~~~~~~~~~l~w~~~---~~~~e~~~~~~e~~l~~~K 611 (626)
..|..+...+.++-.-++|++.++++-.... ...++.+ . .|++. .+|.=.....=|-|.+.+|
T Consensus 248 ---PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 248 ---PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred ---CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 2243444444454445789999999855443 3444444 2 46654 3333323223355555544
No 356
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.53 E-value=0.0071 Score=60.69 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=61.3
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHH---H----HcC
Q 006905 188 TMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFA---L----ERG 256 (626)
Q Consensus 188 t~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A---~----erg 256 (626)
..+++-....+..+.+.+.+.. ....+|||||.|......+-. ...++++.+. .+..+.... . ..|
T Consensus 21 ~~YGEi~~~~~~~il~~~~l~~--~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~-~~~~a~~~~~~~~~~~~~~g 97 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNLTP--DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE-LHDLAEELLEELKKRMKHYG 97 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT--T--T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH-HHHHHHHHHHHHHHHHHHCT
T ss_pred cceeecCHHHHHHHHHHhCCCC--CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH-HHHHHHHHHHHHHHHHHHhh
Confidence 3455656666666666665544 459999999999655443332 4788888763 333222211 1 122
Q ss_pred C---CeEEEEcccccCCCCC---CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEE
Q 006905 257 V---PALIGVLAAERLPYPS---RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 257 ~---~~~~~v~d~~~Lpf~d---~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvi 311 (626)
. ++.+..+|....++.. ..-|+|+++... +.++....|.++..-||+|-++|-
T Consensus 98 ~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 98 KRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp B---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 2 2334444432222110 246999998765 455556777888889999877653
No 357
>PRK00536 speE spermidine synthase; Provisional
Probab=96.50 E-value=0.024 Score=59.01 Aligned_cols=93 Identities=8% Similarity=0.003 Sum_probs=63.3
Q ss_pred cCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc---------CCCeEEEEcccccCCCCCCC
Q 006905 207 LNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER---------GVPALIGVLAAERLPYPSRA 275 (626)
Q Consensus 207 l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er---------g~~~~~~v~d~~~Lpf~d~s 275 (626)
...+..++||=||.|.|..++.+++. .|+.+|+++ ..++.+++. ...+.+.. ... .-..++
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~-----~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~ 139 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE-----KILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKK 139 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH-----HHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCc
Confidence 34455789999999999999999997 577787765 344444431 11222221 111 112368
Q ss_pred eeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 276 FDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 276 FDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
||+|+.-.. ....+++.+.|+|+|||.++...
T Consensus 140 fDVIIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 140 YDLIICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CCEEEEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 999998542 23678899999999999999964
No 358
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.016 Score=64.55 Aligned_cols=100 Identities=20% Similarity=0.220 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCC---CCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYP---SRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~---d~sFDlV~~~~~l 285 (626)
..++||+=||.|.|+..|+++ .|+++++++..+..++ +.|+.+++. +.+..+++++..-. ...||.|+.....
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR 372 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR 372 (432)
T ss_pred CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCC
Confidence 458999999999999999976 8999999996665444 455566665 66777776665422 3578999886533
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
..-...+++.+.+ ++|-..+++|..|.
T Consensus 373 ---~G~~~~~lk~l~~-~~p~~IvYVSCNP~ 399 (432)
T COG2265 373 ---AGADREVLKQLAK-LKPKRIVYVSCNPA 399 (432)
T ss_pred ---CCCCHHHHHHHHh-cCCCcEEEEeCCHH
Confidence 2111355555544 57888999996543
No 359
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.46 E-value=0.015 Score=60.90 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=56.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHH---cCCCeEEE--Ecc--cccCCCCCCCeeE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALE---RGVPALIG--VLA--AERLPYPSRAFDM 278 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~e---rg~~~~~~--v~d--~~~Lpf~d~sFDl 278 (626)
..++|||+|||.|.....+.+. .++.+|.++. +.++++. ........ ... ....++. ..|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DL 105 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPE-----MLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDL 105 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHH-----HHHHHHHHHhcccccccchhhhhhhcccccCC--CCcE
Confidence 3568999999999655544432 5666666553 4443332 11111100 001 1122332 3499
Q ss_pred EEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCC
Q 006905 279 AHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 279 V~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
|+++++|....+.. ..+++.+.+.+.+ +|+|..|..
T Consensus 106 vi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 106 VIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred EEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 99999997776632 5667777777766 888887633
No 360
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.46 E-value=0.0014 Score=66.09 Aligned_cols=123 Identities=22% Similarity=0.298 Sum_probs=82.2
Q ss_pred CCceeEEeccCchhhHhhhhhCCCe-EEEEeccCccCcccHHHH----HHhcc----cceec-cccccCCCCC-Cccc-e
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPV-WVMNVVPAEAKINTLGVI----YERGL----VGTYT-NWCEAMSTYP-RTYD-L 535 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v-~~mnv~~~~~~~~~l~~~----~~rgl----i~~~~-~~~e~~~~yp-~t~D-l 535 (626)
.+--+|||.-.|.|-+|..-+++|. .|. -++-.+|.|+.+ +.|+| |-+++ |--|...+++ .+|| +
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~Vi---tvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVI---TVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEE---EEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 4567899999999999999999987 333 233334566544 34555 34444 4456677788 7899 5
Q ss_pred eeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE--------cChHHHHHHHHHHHhCCCeeEEe
Q 006905 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR--------DDVDELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 536 ih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~--------d~~~~~~~~~~~~~~l~w~~~~~ 594 (626)
||=--=||+...- =-+.+-.|+.|||||||.++== -..+....+.+.+.+.-....-.
T Consensus 210 iHDPPRfS~AgeL-YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 210 IHDPPRFSLAGEL-YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred eeCCCccchhhhH-hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 6765566654421 1156889999999999998752 12355667777777777774433
No 361
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.45 E-value=0.00066 Score=64.39 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=46.4
Q ss_pred cccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCc
Q 006905 266 AERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGPPINW 318 (626)
Q Consensus 266 ~~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~pp~~w 318 (626)
....+|.+++.|+|.|.++++|+..+. ..++++++|+|||||+|-++.|....
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 456789999999999999999987655 68999999999999999999886653
No 362
>PLN02476 O-methyltransferase
Probab=96.45 E-value=0.018 Score=60.35 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=79.6
Q ss_pred CCceeEEeccCchhhHhhhhhC----CCeEEEEeccCccCcccHHHH----HHhcc---cceec-cccccCCCC-----C
Q 006905 468 GRYRNILDMNAHLGGFAAALID----FPVWVMNVVPAEAKINTLGVI----YERGL---VGTYT-NWCEAMSTY-----P 530 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~----~~v~~mnv~~~~~~~~~l~~~----~~rgl---i~~~~-~~~e~~~~y-----p 530 (626)
..-++||++|+|+|..+.+|+. .+. |+.+|..+...+++ .+-|+ |.+.+ +-.+.+..+ +
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~----V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGC----LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCE----EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccC
Confidence 3468999999999999998875 232 66667766666655 33444 22332 122222222 3
Q ss_pred CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------------HHHHHHHHH----HHhCCCeeEEe
Q 006905 531 RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV------------DELVKVKRI----IDALKWQSQIV 594 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------------~~~~~~~~~----~~~l~w~~~~~ 594 (626)
.+||+|-.+. ++-+...++...-+.|||||.+|+-+.. .....|+++ .+.=++++.+.
T Consensus 193 ~~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~ll 266 (278)
T PLN02476 193 SSYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMV 266 (278)
T ss_pred CCCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 6899998743 2235567888889999999999884210 112234443 44456777765
Q ss_pred ecCCCCCCcceEEEEEec
Q 006905 595 DHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 595 ~~e~~~~~~e~~l~~~K~ 612 (626)
-. .+.+++++|+
T Consensus 267 Pi------gDGl~i~~K~ 278 (278)
T PLN02476 267 PI------GDGMTICRKR 278 (278)
T ss_pred Ee------CCeeEEEEEC
Confidence 43 3678888874
No 363
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.024 Score=58.18 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=74.1
Q ss_pred cCCCCCceeEEeccCchhhHhhhhh----CCCeEEEEeccCccCcccHHHHHHh----cccc-eec---cccccCCCCCC
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALI----DFPVWVMNVVPAEAKINTLGVIYER----GLVG-TYT---NWCEAMSTYPR 531 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~----~~~v~~mnv~~~~~~~~~l~~~~~r----gli~-~~~---~~~e~~~~yp~ 531 (626)
|.+ --.|||.|.|+|.++++|+ +.| .|+..+..++..+.|.+. |+.. +-+ |-++... +.
T Consensus 92 i~p---g~rVlEAGtGSG~lt~~La~~vg~~G----~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--~~ 162 (256)
T COG2519 92 ISP---GSRVLEAGTGSGALTAYLARAVGPEG----HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--EE 162 (256)
T ss_pred CCC---CCEEEEcccCchHHHHHHHHhhCCCc----eEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--cc
Confidence 555 4469999999999999998 333 466667777777766553 5533 211 3344333 46
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCCC
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALKW 589 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~w 589 (626)
.||.|.. +-=+.-.+|.-++.+|+|||.+++- -..+++.++-+.++..+|
T Consensus 163 ~vDav~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 163 DVDAVFL--------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred ccCEEEE--------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 8998887 3223346999999999999999884 455666666665665555
No 364
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.42 E-value=0.021 Score=57.75 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=69.0
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccc-cc
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAA-ER 268 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~-~~ 268 (626)
..+.+..++.+.+ .++.||||.=+|.-+..++.. .++++|+.+..... ..++.+..|+. +.+.++.+ +.
T Consensus 61 ~g~fl~~li~~~~--ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~-~~~~~k~agv~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 61 KGQFLQMLIRLLN--AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEI-GLELVKLAGVDHKITFIEGPALES 137 (237)
T ss_pred HHHHHHHHHHHhC--CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHH-hHHHHHhccccceeeeeecchhhh
Confidence 3334444444444 348999998777444444332 78999997743332 23444444553 44454442 22
Q ss_pred CC-----CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 269 LP-----YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 269 Lp-----f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
|+ ...++||+|+. .||-+....++.++.++||+||.+++.
T Consensus 138 Ld~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 22 35789999976 346655578999999999999999996
No 365
>PLN02672 methionine S-methyltransferase
Probab=96.41 E-value=0.0095 Score=72.61 Aligned_cols=119 Identities=14% Similarity=0.100 Sum_probs=78.9
Q ss_pred eeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc----------------------cceec-cccccC
Q 006905 471 RNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL----------------------VGTYT-NWCEAM 526 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl----------------------i~~~~-~~~e~~ 526 (626)
..|||+|||+|-.+.+|+++ +. -.|+.+|.+++.++++.+..- +.+++ ||.+.+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~--~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP--SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46999999999999999875 22 278999999999987743321 23333 565544
Q ss_pred CCCCCccceeeecccc---------c-----cC--------CCCCCH-------------HHHHHHhhhhccCCcEEEEE
Q 006905 527 STYPRTYDLIHADSVF---------S-----LY--------KDRCET-------------EDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 527 ~~yp~t~Dlih~~~~f---------~-----~~--------~~~c~~-------------~~~l~E~dRiLRPgG~~i~~ 571 (626)
......||+|.++==. + +. ...|-+ ..++.+.-++|||||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2111269988875321 0 00 012222 45889999999999999997
Q ss_pred cChHHHHHHH-HHHHhCCCee
Q 006905 572 DDVDELVKVK-RIIDALKWQS 591 (626)
Q Consensus 572 d~~~~~~~~~-~~~~~l~w~~ 591 (626)
-..+.-+.++ +++.+..|+.
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCe
Confidence 6655566777 5777666654
No 366
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.012 Score=63.90 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=68.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhhC--C----cEEEeCCccchHHHHHHHHHHcCCCe-EEEEcccccCC--CCC-CCee
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLSR--N----IITMSFAPRDTHEAQVQFALERGVPA-LIGVLAAERLP--YPS-RAFD 277 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~~--~----V~avdis~~dls~a~i~~A~erg~~~-~~~v~d~~~Lp--f~d-~sFD 277 (626)
.+.++.+|||+.++.|.=+.++++. + |+++|+++.-+ ....+...+.|+.+ .....|...++ .+. +.||
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 4444569999999999766666664 2 47899877433 34445555667764 44555655554 222 3599
Q ss_pred EEEe----c--cccc-----cccc----------cHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 278 MAHC----S--RCLI-----PWNQ----------FGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 278 lV~~----~--~~l~-----h~~~----------~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
.|.. + .++. -|.. -+..+|....++|||||.|+.++-.
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 9995 2 2220 0111 1137899999999999999998643
No 367
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.36 E-value=0.023 Score=64.79 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=16.9
Q ss_pred CCEEEEeCCCCchHHHHHhh
Q 006905 212 IRTAIDTGCGVASWGAYLLS 231 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~ 231 (626)
..+|||.|||+|.|...++.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~ 51 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLK 51 (524)
T ss_pred ceEEEeCCCCccHHHHHHHH
Confidence 45899999999988877765
No 368
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.031 Score=57.92 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=59.3
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSR 274 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~ 274 (626)
.++.|.+.+...+ +.+|||||+|.|.++..|+++ .|+++++++.... ...+... ......+..+|+...++++.
T Consensus 18 v~~kIv~~a~~~~--~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~-~L~~~~~-~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 18 VIDKIVEAANISP--GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAE-VLKERFA-PYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHHhcCCCC--CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHH-HHHHhcc-cccceEEEeCchhcCcchhh
Confidence 4566777665555 458999999999999999997 6888888763222 2211111 22346677788888887754
Q ss_pred -CeeEEEecccc
Q 006905 275 -AFDMAHCSRCL 285 (626)
Q Consensus 275 -sFDlV~~~~~l 285 (626)
.++.|+++.-.
T Consensus 94 ~~~~~vVaNlPY 105 (259)
T COG0030 94 AQPYKVVANLPY 105 (259)
T ss_pred cCCCEEEEcCCC
Confidence 68999998844
No 369
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.0082 Score=56.61 Aligned_cols=74 Identities=18% Similarity=0.146 Sum_probs=54.0
Q ss_pred CCCEEEEeCCCCchHH--HHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWG--AYLLS-RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a--~~La~-~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
.+.+++|+|||.|-+. ..+.+ ..+.++|+++..+ +...+.+.+..+.+.+.+++...+-+..+.||.++.+.-+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 4678999999999554 33333 4789999988433 4455556666677777778877777777899999988755
No 370
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.21 E-value=0.0063 Score=64.94 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=67.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccH----HHHHHhcc---cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTL----GVIYERGL---VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l----~~~~~rgl---i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-++|||+|||+|-+...-++.|. -+|.+++++ ++. +++.+.|+ |.++++--|.+ ..| .-.|+|-+-++
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWM 136 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCc--ceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhh
Confidence 56799999999998877777764 366777776 544 36666777 55555544555 567 99999998554
Q ss_pred --cccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 542 --FSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 542 --f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
|..+++ .+..+|.-=||.|+|||.++=
T Consensus 137 Gy~Ll~Es--MldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYES--MLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhh--hhhhhhhhhhhccCCCceEcc
Confidence 334443 445688888999999998763
No 371
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.21 E-value=0.037 Score=59.21 Aligned_cols=102 Identities=9% Similarity=0.040 Sum_probs=60.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCCeEE--EEccccc----CCC--CCCC
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--------NIITMSFAPRDTHEAQVQFALERGVPALI--GVLAAER----LPY--PSRA 275 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--------~V~avdis~~dls~a~i~~A~erg~~~~~--~v~d~~~----Lpf--~d~s 275 (626)
+..++|+|||+|.=+..|++. .++++|++...+..+..+.....-..+.+ ..+|..+ ++- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 447999999999765555442 37788887755554444443122122332 3344211 322 1234
Q ss_pred eeEEEecc-ccccccccH-HHHHHHHHh-cccCCeEEEEEe
Q 006905 276 FDMAHCSR-CLIPWNQFG-GIYLIEVDR-VLRPGGYWILSG 313 (626)
Q Consensus 276 FDlV~~~~-~l~h~~~~~-~~~L~Ei~R-vLKPGG~lvis~ 313 (626)
..+++.-. ++-.+.... ..+|+++.+ .|+|||.|+|..
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 67777644 343333322 578999999 999999999964
No 372
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.18 E-value=0.092 Score=51.88 Aligned_cols=136 Identities=16% Similarity=0.147 Sum_probs=78.2
Q ss_pred cCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFAL 253 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~ 253 (626)
.|..+.+|.+.+. ....+..-+.+-.++....-.+.++||+=+|+|.++...+.+ .++.+|.+..... ...+...
T Consensus 10 kgr~L~~p~~~~~-RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~-~l~~N~~ 87 (187)
T COG0742 10 KGRKLKTPDGPGT-RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVK-ILKENLK 87 (187)
T ss_pred cCCcccCCCCCCc-CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHH-HHHHHHH
Confidence 4566666665332 233344445555665431134669999999999999999998 5677777553222 1222222
Q ss_pred HcC--CCeEEEEccccc-CCCCCC--CeeEEEeccccccccccHHHHHH--HHHhcccCCeEEEEEeC
Q 006905 254 ERG--VPALIGVLAAER-LPYPSR--AFDMAHCSRCLIPWNQFGGIYLI--EVDRVLRPGGYWILSGP 314 (626)
Q Consensus 254 erg--~~~~~~v~d~~~-Lpf~d~--sFDlV~~~~~l~h~~~~~~~~L~--Ei~RvLKPGG~lvis~p 314 (626)
.-+ ....+...|+.. |+.... .||+|+.-.-+..-.-+....+. +-...|+|+|.+++...
T Consensus 88 ~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 88 ALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 333 345555556443 222223 49999997755211111122222 35578999999999854
No 373
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.05 E-value=0.074 Score=55.21 Aligned_cols=157 Identities=16% Similarity=0.193 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc-------cc
Q 006905 446 NSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL-------VG 517 (626)
Q Consensus 446 d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl-------i~ 517 (626)
.|+-|.+.|..-.+ .... ..--.+||+|||+|..+-.|+.. + -..|+++|-++..+..+.|... |.
T Consensus 129 ETEE~V~~Vid~~~---~~~~-~~~~~ildlgtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 129 ETEEWVEAVIDALN---NSEH-SKHTHILDLGTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred cHHHHHHHHHHHHh---hhhh-cccceEEEecCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 46788888864222 1111 12227999999999999888754 2 2257888988887777766533 66
Q ss_pred eecc--ccccCCCCC---Cccceeeeccc--cc-----------cCCCC--------CC--HHHHHHHhhhhccCCcEEE
Q 006905 518 TYTN--WCEAMSTYP---RTYDLIHADSV--FS-----------LYKDR--------CE--TEDILLEMDRILRPEGGVI 569 (626)
Q Consensus 518 ~~~~--~~e~~~~yp---~t~Dlih~~~~--f~-----------~~~~~--------c~--~~~~l~E~dRiLRPgG~~i 569 (626)
+.|. =.+.+.++| ..+|+|.++-= ++ .|+++ |. +..+..=.-|.|+|||.++
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 7663 245566676 99999988632 22 11111 11 1124555679999999999
Q ss_pred EEcC-----hHHHHH-HHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 570 FRDD-----VDELVK-VKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 570 ~~d~-----~~~~~~-~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
+.-. ...... |+...+.-.|.+.++.. -.+.+++++..+
T Consensus 283 le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~D---f~~~~Rfv~i~r 327 (328)
T KOG2904|consen 283 LELVERKEHSYLVRIWMISLKDDSNGKAAVVSD---FAGRPRFVIIHR 327 (328)
T ss_pred EEecccccCcHHHHHHHHhchhhccchhheeec---ccCCcceEEEEe
Confidence 9632 122222 33335555566655431 124566666543
No 374
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.04 E-value=0.018 Score=63.08 Aligned_cols=102 Identities=13% Similarity=0.035 Sum_probs=68.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEccccc-CC---CCCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAER-LP---YPSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~~-Lp---f~d~sFDlV~~ 281 (626)
+++|||+=|=||.|+.+.+.. .++.||++...+.-+..++. -+|+ ...+.++|+.. +. -...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~-LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE-LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH-hcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 569999999999999988875 67788776655544443333 3344 25677777433 32 23448999997
Q ss_pred cccccc------c--cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 282 SRCLIP------W--NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 282 ~~~l~h------~--~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
-..-.- | ..+...++....++|+|||.++++..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 322100 1 11224788999999999999999864
No 375
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.00 E-value=0.02 Score=56.66 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=64.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
.+++|||+|+|+|-.+..-+.. .|...|+.| ....+..-.+..+|+.+.+...|.. ..+..||+|+.+..+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P-~~~~ai~lNa~angv~i~~~~~d~~---g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDP-WLEQAIRLNAAANGVSILFTHADLI---GSPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCCh-HHHHHhhcchhhccceeEEeecccc---CCCcceeEEEeeceecC
Confidence 3679999999999555444443 788889876 3433333345567776666644322 25678999999887622
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
+..-..++. +.+.|+-.|.-++.+.|.
T Consensus 155 -~~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 155 -HTEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred -chHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 222245555 777777777777776543
No 376
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.94 E-value=0.013 Score=58.63 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=90.3
Q ss_pred eEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHH----HHHHhcccc----eecccccc-------CCCCCCccce
Q 006905 472 NILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLG----VIYERGLVG----TYTNWCEA-------MSTYPRTYDL 535 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~----~~~~rgli~----~~~~~~e~-------~~~yp~t~Dl 535 (626)
.||.+|+|+|--+++++.. +- +.--|.|...+.+. .+.+.|+.. +.-|-+.. -..++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 7999999999999999875 21 24577887755543 234566622 11122222 1224589999
Q ss_pred eeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE------------------------cCh---HHHHHHHHHHHhCC
Q 006905 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR------------------------DDV---DELVKVKRIIDALK 588 (626)
Q Consensus 536 ih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~------------------------d~~---~~~~~~~~~~~~l~ 588 (626)
|.|..+++.....|- +.+|.+..|+|+|||.+++= |+. --++.|..++.+-.
T Consensus 106 i~~~N~lHI~p~~~~-~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHISPWSAV-EGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhcCHHHH-HHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 999888887666544 88999999999999999993 110 12667888888776
Q ss_pred CeeEEeecCCCCCCcceEEEEEe
Q 006905 589 WQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 589 w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
+... +.-+-| ...++||++|
T Consensus 185 L~l~--~~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELE--EDIDMP-ANNLLLVFRK 204 (204)
T ss_pred CccC--cccccC-CCCeEEEEeC
Confidence 6643 222334 2478999987
No 377
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.92 E-value=0.025 Score=59.93 Aligned_cols=97 Identities=10% Similarity=0.132 Sum_probs=56.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
.++.|||+|||+|.+....+.. .|.+++.+.. .+-+.++...+.+. +.+..+..+++.+| +..|+|++-..-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~M--AqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEM--AQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHH--HHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 4678999999999766555554 6788776441 12222222233332 33333446666555 579999984432
Q ss_pred ccccccHHHHH---HHHHhcccCCeEEEEE
Q 006905 286 IPWNQFGGIYL---IEVDRVLRPGGYWILS 312 (626)
Q Consensus 286 ~h~~~~~~~~L---~Ei~RvLKPGG~lvis 312 (626)
.-... +++| --..|.|+|.|..+=.
T Consensus 254 ~mL~N--ERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVN--ERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhh--HHHHHHHHHHHhhcCCCCcccCc
Confidence 11111 2322 2355999999998654
No 378
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.92 E-value=0.064 Score=57.65 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=58.9
Q ss_pred CCCCEEEEeCCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSRN--IITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~~--V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
.++.++|||||++|.|+..|.+++ |+++|..+.+. . ......+.....+..+..-+.+.+|+|+|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~------~-L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv--- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ------S-LMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV--- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH------h-hhCCCCEEEEeccCcccCCCCCCCCEEEEecc---
Confidence 346799999999999999999996 66666543211 1 12223355555554443222678999999554
Q ss_pred ccccHHHHHHHHHhcccCC--eEEEEE
Q 006905 288 WNQFGGIYLIEVDRVLRPG--GYWILS 312 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPG--G~lvis 312 (626)
..+...+.-+.+.|..| ..+|+.
T Consensus 280 --e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 --EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred --cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 45667777777777665 355554
No 379
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.86 E-value=0.11 Score=52.41 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=59.3
Q ss_pred CCEEEEeCCCCchHHHHHh----hCCcEEEeCCccchHHHHHH-HHHHcCCC-eEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLL----SRNIITMSFAPRDTHEAQVQ-FALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La----~~~V~avdis~~dls~a~i~-~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
..+++|||+|.|.-+.-|+ +.+++-+|-...- .++++ ...+-+++ +.+....++.+.-...-||+|+|..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk--~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKK--IAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchH--HHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 4689999999996555544 2366666654432 23333 34455776 555555566665321119999985533
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEE
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvi 311 (626)
....++.-....||+||.++.
T Consensus 146 -----~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 -----SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -----chHHHHHHHHHhcccCCcchh
Confidence 346677778899999998865
No 380
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=95.85 E-value=0.025 Score=56.73 Aligned_cols=130 Identities=16% Similarity=0.212 Sum_probs=79.3
Q ss_pred CCceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHH----HHhcc---cceec-cccccCCCC-----CC
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVI----YERGL---VGTYT-NWCEAMSTY-----PR 531 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~----~~rgl---i~~~~-~~~e~~~~y-----p~ 531 (626)
.+-++||.+|+++|--|.+|+.. +- .|+-++..+...+++ ..-|+ |.+.+ +..+.+..+ +.
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g---~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDG---KITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTS---EEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccc---eEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 34789999999999888888742 22 355556665566655 34455 44444 333333332 25
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh----------------HHHHHHHHHHHhCCCeeEEee
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV----------------DELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----------------~~~~~~~~~~~~l~w~~~~~~ 595 (626)
+||+|-.+. ++-+....+..+-+.|||||.+|+-+.. .+.+-.+.+.+.=+.++.+..
T Consensus 121 ~fD~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llp 194 (205)
T PF01596_consen 121 QFDFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLP 194 (205)
T ss_dssp SEEEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEEC
T ss_pred ceeEEEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEE
Confidence 899998744 2335567777888999999999986321 112222334555567777664
Q ss_pred cCCCCCCcceEEEEEec
Q 006905 596 HEDGPLEREKLLFAVKL 612 (626)
Q Consensus 596 ~e~~~~~~e~~l~~~K~ 612 (626)
. .+.|++++|+
T Consensus 195 i------gdGl~l~~K~ 205 (205)
T PF01596_consen 195 I------GDGLTLARKR 205 (205)
T ss_dssp S------TTEEEEEEE-
T ss_pred e------CCeeEEEEEC
Confidence 3 3678999884
No 381
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.81 E-value=0.02 Score=60.47 Aligned_cols=138 Identities=14% Similarity=0.203 Sum_probs=78.9
Q ss_pred hchhhhHHHHHHHH--HHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-----
Q 006905 442 IFQQNSELWKKRLS--YYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----- 514 (626)
Q Consensus 442 ~f~~d~~~w~~~v~--~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----- 514 (626)
.|..+-+.|.+.|- .|. .+.+-|+|||||-||=....-+-++ --++.+|..+--++-+..|=
T Consensus 97 i~lRnfNNwIKs~LI~~y~---------~~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~ 165 (389)
T KOG1975|consen 97 IFLRNFNNWIKSVLINLYT---------KRGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKN 165 (389)
T ss_pred eehhhhhHHHHHHHHHHHh---------ccccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHh
Confidence 35555566766542 222 3366699999999985433333332 23556666544444443332
Q ss_pred ----------ccc---eeccccccCCCCC-CccceeeeccccccC-CCCCCHHHHHHHhhhhccCCcEEEEEcC--hHHH
Q 006905 515 ----------LVG---TYTNWCEAMSTYP-RTYDLIHADSVFSLY-KDRCETEDILLEMDRILRPEGGVIFRDD--VDEL 577 (626)
Q Consensus 515 ----------li~---~~~~~~e~~~~yp-~t~Dlih~~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~i~~d~--~~~~ 577 (626)
+|. +.-..-+.+. ++ ..||+|-|+-.|++. .......-.|.-+-+-|||||+||=+-+ ..++
T Consensus 166 r~~~~~f~a~f~~~Dc~~~~l~d~~e-~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii 244 (389)
T KOG1975|consen 166 RFKKFIFTAVFIAADCFKERLMDLLE-FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVII 244 (389)
T ss_pred hhhcccceeEEEEeccchhHHHHhcc-CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHH
Confidence 111 0001112222 34 449999998888743 3323334588899999999999999844 3466
Q ss_pred HHHHHHHHhCCCeeE
Q 006905 578 VKVKRIIDALKWQSQ 592 (626)
Q Consensus 578 ~~~~~~~~~l~w~~~ 592 (626)
.+++.. ...+|.-.
T Consensus 245 ~rlr~~-e~~~~gNd 258 (389)
T KOG1975|consen 245 KRLRAG-EVERFGND 258 (389)
T ss_pred HHHHhc-cchhhcce
Confidence 677665 33455433
No 382
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.78 E-value=0.043 Score=56.83 Aligned_cols=82 Identities=20% Similarity=0.271 Sum_probs=55.3
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC----eEEEEcccccCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP----ALIGVLAAERLP 270 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~----~~~~v~d~~~Lp 270 (626)
.+++|.+-.++.+ ...||++|-|||.++..|++. .|+++++++.++.+-.... .|.+ ..+..+|....+
T Consensus 46 v~~~I~~ka~~k~--tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 46 VIDQIVEKADLKP--TDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHhccCCCC--CCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccCC
Confidence 3445555554554 448999999999999999997 7889999886665433222 2333 345556655555
Q ss_pred CCCCCeeEEEecccc
Q 006905 271 YPSRAFDMAHCSRCL 285 (626)
Q Consensus 271 f~d~sFDlV~~~~~l 285 (626)
+| .||.++++.-.
T Consensus 121 ~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 121 LP--RFDGCVSNLPY 133 (315)
T ss_pred Cc--ccceeeccCCc
Confidence 43 59999997744
No 383
>PRK00536 speE spermidine synthase; Provisional
Probab=95.75 E-value=0.056 Score=56.25 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=74.8
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh------cc-
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER------GL- 515 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r------gl- 515 (626)
-+.|...+++.+.|=. -+.- +.-++||=+|.|-||.++.+++.+- +|+-+|..+.+++++.+- ++
T Consensus 51 te~dEfiYHEmLvHpp----l~~h-~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~ 122 (262)
T PRK00536 51 FKNFLHIESELLAHMG----GCTK-KELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKN 122 (262)
T ss_pred ecchhhhHHHHHHHHH----HhhC-CCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhc
Confidence 4455566666555422 1233 6689999999999999999999973 677777776787777662 11
Q ss_pred ---cceeccccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 516 ---VGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 516 ---i~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+.++ .+ ......++||+|-.+.+|+ +.....+.|.|+|||.++..
T Consensus 123 DpRv~l~-~~--~~~~~~~~fDVIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 123 NKNFTHA-KQ--LLDLDIKKYDLIICLQEPD--------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CCCEEEe-eh--hhhccCCcCCEEEEcCCCC--------hHHHHHHHHhcCCCcEEEEC
Confidence 1111 11 0111237899999987655 45557789999999999995
No 384
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.69 E-value=0.045 Score=57.32 Aligned_cols=126 Identities=20% Similarity=0.276 Sum_probs=85.5
Q ss_pred CCceeEEeccCchhhHhhhh-hCCCeEEEEeccCccCcccH----HHHHHhcccce---eccccccCCCCC---Ccccee
Q 006905 468 GRYRNILDMNAHLGGFAAAL-IDFPVWVMNVVPAEAKINTL----GVIYERGLVGT---YTNWCEAMSTYP---RTYDLI 536 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l-~~~~v~~mnv~~~~~~~~~l----~~~~~rgli~~---~~~~~e~~~~yp---~t~Dli 536 (626)
++--.||||-||.|..---- .+.+--..+|.=.|-++..+ ..|.+|||-++ .+.-|-...+|- -..+|+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 66778999999999753222 22222122455555554444 48999999443 333333333453 567899
Q ss_pred eeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh--HHHHHHHHHHHhC----CCeeEE
Q 006905 537 HADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV--DELVKVKRIIDAL----KWQSQI 593 (626)
Q Consensus 537 h~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~--~~~~~~~~~~~~l----~w~~~~ 593 (626)
-.+++|....+.-.+..-|.=+.++|.|||++|++-.. -.++.|...+.+. -|-.+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr 276 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR 276 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe
Confidence 99999999998766777888999999999999999754 3567777777663 576663
No 385
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.68 E-value=0.044 Score=59.90 Aligned_cols=95 Identities=8% Similarity=0.070 Sum_probs=66.7
Q ss_pred CEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC-CCCCCeeEEEecccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP-YPSRAFDMAHCSRCL 285 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp-f~d~sFDlV~~~~~l 285 (626)
.+|||+-||+|..+.+++.+ .|+++|+++.... ...+.++.+++. +.+...|+..+- .....||+|..-. +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~-~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVE-SIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 47999999999999999875 3789999884443 333344444543 455555644332 2235799998744 2
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. .+..++..+.+.+++||++.++.
T Consensus 124 ---G-s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---G-TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---C-CcHHHHHHHHHhcccCCEEEEEe
Confidence 2 23679999999999999999983
No 386
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=95.62 E-value=0.0074 Score=60.85 Aligned_cols=99 Identities=14% Similarity=0.244 Sum_probs=74.7
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh---cccceeccccccCCCCC-Cccceeeeccccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER---GLVGTYTNWCEAMSTYP-RTYDLIHADSVFS 543 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r---gli~~~~~~~e~~~~yp-~t~Dlih~~~~f~ 543 (626)
...-.++|+||+.|..+..|...+| -.++-+|.|-.|++-..+- +++-.+-.--|-|.+|- +++|||-++...
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl- 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL- 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-
Confidence 3466799999999999999999985 4566678887888877665 45444433336677675 999999875443
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
||.+ +++.-|....-+|||.|.||-+
T Consensus 148 HW~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 148 HWTN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhc--cCchHHHHHHHhcCCCccchhH
Confidence 4443 6688889999999999999875
No 387
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.59 E-value=0.019 Score=55.91 Aligned_cols=100 Identities=22% Similarity=0.290 Sum_probs=57.4
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHH---HHHHhcc------cc-eeccccccC--CCC-CCccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG---VIYERGL------VG-TYTNWCEAM--STY-PRTYD 534 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~---~~~~rgl------i~-~~~~~~e~~--~~y-p~t~D 534 (626)
.+-++||++|||.|-.|.+++.. .....|+-+|.++ .++ .+.++.. +. ...+|.+.. ... ++.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~-~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL-FGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhc-cCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 34678999999999555555444 0112566677664 544 3444321 22 334898754 112 37899
Q ss_pred eeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 535 LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 535 lih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+|.++.++-... ..+.++.=++++|.|+|.+++..
T Consensus 122 ~IlasDv~Y~~~---~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 122 VILASDVLYDEE---LFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEEES--S-GG---GHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEEecccchHH---HHHHHHHHHHHHhCCCCEEEEEe
Confidence 999987776533 45778888999999999988864
No 388
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.55 E-value=0.037 Score=57.28 Aligned_cols=71 Identities=8% Similarity=0.101 Sum_probs=50.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC-Cccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP-RTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~ 543 (626)
-.+|||+|||.|.++..|++++. .|+.+|.++.+++.+.++-- .+-+.-.+..+..++ ..||.|.++--|.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~NlPy~ 102 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLPYQ 102 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEEcCCcc
Confidence 47899999999999999999864 68889999889998877531 121222234455555 4589888865543
No 389
>PLN02823 spermine synthase
Probab=95.50 E-value=0.088 Score=56.79 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=63.4
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc-c---------ceec-cccccCCCCCCccce
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL-V---------GTYT-NWCEAMSTYPRTYDL 535 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl-i---------~~~~-~~~e~~~~yp~t~Dl 535 (626)
...++||-+|+|.|+.++.+++. ++ .+|+-+|..+.+++++.+.-- . .++. |=-+-+..-++.||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~--~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTV--EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 34688999999999999988875 34 466777777789988876531 1 1111 100111112478999
Q ss_pred eeeccccccCC-CCCC---HHHHHH-HhhhhccCCcEEEEE
Q 006905 536 IHADSVFSLYK-DRCE---TEDILL-EMDRILRPEGGVIFR 571 (626)
Q Consensus 536 ih~~~~f~~~~-~~c~---~~~~l~-E~dRiLRPgG~~i~~ 571 (626)
|-++ ++.-.. .-+. -...+. .+.|.|+|||.+++.
T Consensus 180 Ii~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9986 333111 0110 124555 789999999999874
No 390
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=95.48 E-value=0.03 Score=55.96 Aligned_cols=98 Identities=12% Similarity=0.072 Sum_probs=59.3
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCCCccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
.+|||+|||+|.++..++.++. -.|+.+|.++..+..+.+. |+ +.+++ |+.+.+......||+|-++-=|-
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 3799999999999986555543 2678888887777755442 22 22333 22222211125799998855442
Q ss_pred cCCCCCCHHHHHHHhh--hhccCCcEEEEEcCh
Q 006905 544 LYKDRCETEDILLEMD--RILRPEGGVIFRDDV 574 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~d--RiLRPgG~~i~~d~~ 574 (626)
. . ..+.++.-+. .+|+|+|.+++.-..
T Consensus 133 ~---g-~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 K---G-LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C---C-hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 1 1 1234444443 468999999998544
No 391
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.44 E-value=0.042 Score=59.63 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=60.0
Q ss_pred CCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEE
Q 006905 187 GTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGV 263 (626)
Q Consensus 187 gt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v 263 (626)
++.|..........+...+.........+||+-||+|.|+..|++. .|+++++.+..+.. +.+.|..+++. +.+..
T Consensus 172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~-A~~Na~~N~i~n~~f~~ 250 (352)
T PF05958_consen 172 GSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVED-ARENAKLNGIDNVEFIR 250 (352)
T ss_dssp TS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHH-HHHHHHHTT--SEEEEE
T ss_pred CcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHH-HHHHHHHcCCCcceEEE
Confidence 3445444443333333333322222237999999999999999996 78899887755543 33445555654 55655
Q ss_pred cccccCC----------------CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 264 LAAERLP----------------YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 264 ~d~~~Lp----------------f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++++++. .....+|+|+.-...-... ..++..+. ++.=.+++|..
T Consensus 251 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~---~~~~~~~~---~~~~ivYvSCn 311 (352)
T PF05958_consen 251 GDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD---EKVIELIK---KLKRIVYVSCN 311 (352)
T ss_dssp --SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC---HHHHHHHH---HSSEEEEEES-
T ss_pred eeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch---HHHHHHHh---cCCeEEEEECC
Confidence 5443321 1223689997754331211 33444443 34556667744
No 392
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.39 E-value=0.2 Score=51.21 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=83.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEE-EEcccccCC---CCCCCeeEEEecc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALI-GVLAAERLP---YPSRAFDMAHCSR 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~-~v~d~~~Lp---f~d~sFDlV~~~~ 283 (626)
.++.+||||+-||.|+..|+++ .|.++|+.-..++. -.+....+.. ...++..+. +. +..|+|+|--
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~-----kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW-----KLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH-----hHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 3679999999999999999997 68899986644443 2233332222 222233332 22 3678999977
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCCCCcccc----cccccchhhhhHHHHHHHHHHHHhhchhhh
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKH----ARGWQRTKEDLNKEQTAIENVAKSLCWEKI 351 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~----~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 351 (626)
+++. ...+|..+..+|+|+|.++.-.-|..-..+ -.+-.+..+.......++++.++..+|...
T Consensus 153 SFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 153 SFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred ehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 6633 477899999999999999987644321111 112334444445556678888888877554
No 393
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=95.35 E-value=0.059 Score=54.57 Aligned_cols=147 Identities=19% Similarity=0.215 Sum_probs=91.9
Q ss_pred HHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHH----hcc---cceec--ccc
Q 006905 454 LSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYE----RGL---VGTYT--NWC 523 (626)
Q Consensus 454 v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~----rgl---i~~~~--~~~ 523 (626)
...|..++-.+ ...++||.+|.+.|--|..|+.- +- ---++.+|..+++.++|.+ -|+ |-.+. |+-
T Consensus 47 ~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 47 TGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred HHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 34455544333 34788999999999777777542 10 1136777777777776543 344 23343 666
Q ss_pred ccCCC-CCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE---------cC-----hHHHHHHHHHHHhCC
Q 006905 524 EAMST-YPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR---------DD-----VDELVKVKRIIDALK 588 (626)
Q Consensus 524 e~~~~-yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~---------d~-----~~~~~~~~~~~~~l~ 588 (626)
+.++. ...+||+|..+. ++-+.+..+.+.-+.|||||.+|+- ++ ......++....-+.
T Consensus 123 ~~l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~ 196 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLL 196 (219)
T ss_pred HHHHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHh
Confidence 77774 679999988622 3446678999999999999999883 11 234555666666555
Q ss_pred CeeEEeecCCCCCCcceEEEEEec
Q 006905 589 WQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 589 w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
++-+. ++.--| ..+.++++.|.
T Consensus 197 ~~~~~-~t~~lP-~gDGl~v~~k~ 218 (219)
T COG4122 197 EDPRY-DTVLLP-LGDGLLLSRKR 218 (219)
T ss_pred hCcCc-eeEEEe-cCCceEEEeec
Confidence 54332 111112 23789999885
No 394
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=95.31 E-value=0.017 Score=60.29 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=47.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc---cceeccccccCCCCC-Cc--cceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL---VGTYTNWCEAMSTYP-RT--YDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl---i~~~~~~~e~~~~yp-~t--~Dlih~~~ 540 (626)
-.+|||+|||+|.++.+|++++. .|+.+|.++.+++.+.++.- +.+++ .++..++ .. +|.|.++-
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~---~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIE---GDALKVDLSELQPLKVVANL 113 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEE---ChhhcCCHHHcCcceEEEeC
Confidence 45799999999999999999864 78999999999999877631 23333 3344443 22 57777753
No 395
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.31 E-value=0.011 Score=61.44 Aligned_cols=115 Identities=20% Similarity=0.268 Sum_probs=74.1
Q ss_pred chhhh-HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceecc
Q 006905 443 FQQNS-ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTN 521 (626)
Q Consensus 443 f~~d~-~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~ 521 (626)
|.++. ..|.+ |..... .... +. .++|+|||.| .++...+- .-+++-|.+..-++.+...|--.+.
T Consensus 25 fs~tr~~~Wp~-v~qfl~---~~~~-gs--v~~d~gCGng---ky~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~-- 90 (293)
T KOG1331|consen 25 FSATRAAPWPM-VRQFLD---SQPT-GS--VGLDVGCGNG---KYLGVNPL--CLIIGCDLCTGLLGGAKRSGGDNVC-- 90 (293)
T ss_pred ccccccCccHH-HHHHHh---ccCC-cc--eeeecccCCc---ccCcCCCc--ceeeecchhhhhccccccCCCceee--
Confidence 55555 56664 333222 2333 33 4999999998 34444431 1456667765555555555531111
Q ss_pred ccccCC-CCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 522 WCEAMS-TYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 522 ~~e~~~-~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.|.++. +++ .+||..-+..+.+|+..++....+|.|+-|+|||||...+.
T Consensus 91 ~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 91 RADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 122222 244 99999999999999999999999999999999999996653
No 396
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.0083 Score=57.54 Aligned_cols=102 Identities=19% Similarity=0.278 Sum_probs=58.7
Q ss_pred CCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHH---HcCC--CeE-EEEcc----cccCCCCCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFAL---ERGV--PAL-IGVLA----AERLPYPSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~---erg~--~~~-~~v~d----~~~Lpf~d~sFDlV~~ 281 (626)
++.||++|.|--.++..|....+..-++-..|.++..++..+ .++. ... ..++. ..+......+||+|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 468999999976666666554222112211222333333222 2221 001 10110 1112233568999999
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.|+ -+.+....+++-|.+.|+|.|..++..|
T Consensus 110 ADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 110 ADCL-FFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred ccch-hHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 9998 4444447889999999999999888876
No 397
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.27 E-value=0.2 Score=53.96 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCC--CCccceeeeccccccCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTY--PRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~y--p~t~Dlih~~~~f~~~~~ 547 (626)
-.+|||+||..|||+-.|++++. .|+++|.. .+-+.+.+-+.+-.+.. ..|..- ++.+|+|.|+.+
T Consensus 212 g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g-~l~~~L~~~~~V~h~~~--d~fr~~p~~~~vDwvVcDmv------ 279 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNG-PMAQSLMDTGQVEHLRA--DGFKFRPPRKNVDWLVCDMV------ 279 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHcCC---EEEEEech-hcCHhhhCCCCEEEEec--cCcccCCCCCCCCEEEEecc------
Confidence 45799999999999999999986 78999976 56666677775443332 333434 478999999544
Q ss_pred CCCHHHHHHHhhhhccCC--cEEEEE
Q 006905 548 RCETEDILLEMDRILRPE--GGVIFR 571 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPg--G~~i~~ 571 (626)
|....++.=|-+.|..| ..+|+.
T Consensus 280 -e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 -EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 44556777788888877 577886
No 398
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.038 Score=55.45 Aligned_cols=100 Identities=22% Similarity=0.253 Sum_probs=62.5
Q ss_pred HHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------cceeccccccC
Q 006905 454 LSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------VGTYTNWCEAM 526 (626)
Q Consensus 454 v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------i~~~~~~~e~~ 526 (626)
|..+..++. +.+ --.||++|||+|--||.|++..- .|+.++.. ..|.-...+.| +.+.| ....
T Consensus 61 vA~m~~~L~-~~~---g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~-~~L~~~A~~~L~~lg~~nV~v~~--gDG~ 130 (209)
T COG2518 61 VARMLQLLE-LKP---GDRVLEIGTGSGYQAAVLARLVG---RVVSIERI-EELAEQARRNLETLGYENVTVRH--GDGS 130 (209)
T ss_pred HHHHHHHhC-CCC---CCeEEEECCCchHHHHHHHHHhC---eEEEEEEc-HHHHHHHHHHHHHcCCCceEEEE--CCcc
Confidence 555555443 444 47899999999988888877632 66777766 44443333333 23333 1333
Q ss_pred CCCC--CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 527 STYP--RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 527 ~~yp--~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.-|| .-||.|+........ +..|+ +-|+|||.+|+=.
T Consensus 131 ~G~~~~aPyD~I~Vtaaa~~v------P~~Ll---~QL~~gGrlv~Pv 169 (209)
T COG2518 131 KGWPEEAPYDRIIVTAAAPEV------PEALL---DQLKPGGRLVIPV 169 (209)
T ss_pred cCCCCCCCcCEEEEeeccCCC------CHHHH---HhcccCCEEEEEE
Confidence 4477 899999985554433 33343 4699999999853
No 399
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.18 E-value=0.039 Score=58.12 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=62.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEccccc-CC--CCCCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAER-LP--YPSRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~~-Lp--f~d~sFDlV~~~ 282 (626)
+++|||+=|=||.|+.+.+.. .|+.||.+...+..+..+++. +++ ...+...|+.. +. -..+.||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 459999999999999987775 467777766555544444333 343 35666666432 22 124689999983
Q ss_pred cccc-----cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 283 RCLI-----PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 283 ~~l~-----h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..-. ....+...++..+.++|+|||.+++...
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2210 1112225688899999999999988753
No 400
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.17 E-value=0.068 Score=56.37 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=51.9
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhcc
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKE 353 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~ 353 (626)
++||+|+..+.+ .-..+.-.++..|..+|||||+++=.+|-.+......+- +....+.-..+.+..+++.++|+.+.+
T Consensus 258 ~~~d~VvTcfFI-DTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~-~~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 258 GSYDVVVTCFFI-DTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV-ENEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CccceEEEEEEe-echHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC-cccccccccHHHHHHHHHhcCcEEEEe
Confidence 469999876533 444444689999999999999999888744322211111 112223334566778889999988776
Q ss_pred c
Q 006905 354 K 354 (626)
Q Consensus 354 ~ 354 (626)
.
T Consensus 336 ~ 336 (369)
T KOG2798|consen 336 R 336 (369)
T ss_pred e
Confidence 5
No 401
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.13 E-value=0.026 Score=59.55 Aligned_cols=122 Identities=16% Similarity=0.216 Sum_probs=79.7
Q ss_pred hchhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchh----hHhhhhhCC-Ce--EEEEeccCccCcccHHHHHHhc
Q 006905 442 IFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLG----GFAAALIDF-PV--WVMNVVPAEAKINTLGVIYERG 514 (626)
Q Consensus 442 ~f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G----~faa~l~~~-~v--~~mnv~~~~~~~~~l~~~~~rg 514 (626)
.|--|...|..-.+.. .. .. + .-.|...||.+| +.|..|.+. +. +-..|+++|.+.+.|+.|.+ |
T Consensus 95 ~FFRd~~~f~~L~~~~---~~--~~-~-~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~-G 166 (287)
T PRK10611 95 AFFREAHHFPILAEHA---RR--RS-G-EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS-G 166 (287)
T ss_pred CccCCcHHHHHHHHHH---Hh--cC-C-CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh-C
Confidence 3666666666533321 11 11 2 357999999999 455555553 11 23479999999888876543 2
Q ss_pred ccc---------------------------------------eeccccccCCCCC--CccceeeeccccccCCCCCCHHH
Q 006905 515 LVG---------------------------------------TYTNWCEAMSTYP--RTYDLIHADSVFSLYKDRCETED 553 (626)
Q Consensus 515 li~---------------------------------------~~~~~~e~~~~yp--~t~Dlih~~~~f~~~~~~c~~~~ 553 (626)
..+ ..|+..+ ..|| ..||+|.|..+|.+... -....
T Consensus 167 ~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~--~~~~~~~~fD~I~cRNvliyF~~-~~~~~ 243 (287)
T PRK10611 167 IYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA--KQWAVPGPFDAIFCRNVMIYFDK-TTQER 243 (287)
T ss_pred CCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC--CCCccCCCcceeeHhhHHhcCCH-HHHHH
Confidence 110 1222222 1244 89999999999987754 35578
Q ss_pred HHHHhhhhccCCcEEEEEcCh
Q 006905 554 ILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 554 ~l~E~dRiLRPgG~~i~~d~~ 574 (626)
++..+.+.|+|||++++....
T Consensus 244 vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 244 ILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred HHHHHHHHhCCCcEEEEeCcc
Confidence 999999999999999887544
No 402
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=95.13 E-value=0.063 Score=60.41 Aligned_cols=96 Identities=20% Similarity=0.360 Sum_probs=59.9
Q ss_pred eeEEeccCchhhHhhhhhCC----CeEEEEeccCccCcccHHHH---HHh-ccc--ceec-cccccC-CCCCCccceee-
Q 006905 471 RNILDMNAHLGGFAAALIDF----PVWVMNVVPAEAKINTLGVI---YER-GLV--GTYT-NWCEAM-STYPRTYDLIH- 537 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~----~v~~mnv~~~~~~~~~l~~~---~~r-gli--~~~~-~~~e~~-~~yp~t~Dlih- 537 (626)
..||||.||.||=+.+|++. + .|+..|.+..-+... ++| |+- -+.+ |- ..+ ..+|..||.|.
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g----~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~-~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQG----AIVANEYSASRVKVLHANISRCGVSNVALTHFDG-RVFGAALPETFDAILL 189 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC----EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch-hhhhhhchhhcCeEEE
Confidence 47999999999988887653 4 377777776655544 344 431 1222 11 112 23568899998
Q ss_pred ---eccccccCCC-----CCC---H-------HHHHHHhhhhccCCcEEEEE
Q 006905 538 ---ADSVFSLYKD-----RCE---T-------EDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 538 ---~~~~f~~~~~-----~c~---~-------~~~l~E~dRiLRPgG~~i~~ 571 (626)
|++.=..-++ +-. + ..+|...-+.|||||++|.+
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 5543221111 001 1 24888899999999999997
No 403
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.08 E-value=0.17 Score=51.19 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=66.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--C--CCCCeeEEEe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--Y--PSRAFDMAHC 281 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--f--~d~sFDlV~~ 281 (626)
++.+||-+|+++|+...++.+- .|.++++++. .-...++.|.+|. ++.-...|+. .| | --+..|+|++
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r-~~rdL~~la~~R~-NIiPIl~DAr-~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPR-SMRDLLNLAKKRP-NIIPILEDAR-HPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHH-HHHHHHHHHHHST-TEEEEES-TT-SGGGGTTTS--EEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecch-hHHHHHHHhccCC-ceeeeeccCC-ChHHhhcccccccEEEe
Confidence 3569999999999888877763 5789999994 4456777887774 3333344443 33 1 1347999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
--+ -+++...++.++...||+||+++++.
T Consensus 150 DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 150 DVA---QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp E-S---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC---ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 553 23333678888999999999999974
No 404
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.04 E-value=0.1 Score=52.36 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=65.5
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEccc-c
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV----PALIGVLAA-E 267 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~----~~~~~v~d~-~ 267 (626)
.+...+++.+. ..+++||.||-|-|.....+.++ .-..++-.| + ..+..+..|- ++....+-- .
T Consensus 89 piMha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-~----V~krmr~~gw~ek~nViil~g~WeD 160 (271)
T KOG1709|consen 89 PIMHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-D----VLKRMRDWGWREKENVIILEGRWED 160 (271)
T ss_pred HHHHHHHHHHh---hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH-H----HHHHHHhcccccccceEEEecchHh
Confidence 45555555554 23568999999999888888776 334445444 3 3333333331 222222221 1
Q ss_pred cCC-CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 268 RLP-YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 268 ~Lp-f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.++ ++|+.||-|+----- ..-++...+..-+.|+|||+|.|-+-
T Consensus 161 vl~~L~d~~FDGI~yDTy~-e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 161 VLNTLPDKHFDGIYYDTYS-ELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhccccccCcceeEeechh-hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 223 568899999864322 23334567888999999999998663
No 405
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.02 E-value=0.21 Score=50.96 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=82.7
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC----Cccceeeeccccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP----RTYDLIHADSVFS 543 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp----~t~Dlih~~~~f~ 543 (626)
.-+++||+|+-+|||.-.|+++++- -|.++|-..++|.--+.... +-++-. +....--| .-.|++.|+-.|-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~-tN~r~l~~~~~~~~~d~~v~DvSFI 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLER-TNVRYLTPEDFTEKPDLIVIDVSFI 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEec-CChhhCCHHHcccCCCeEEEEeehh
Confidence 3577999999999999999999773 57788877777775555554 111110 00111112 3567999977776
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEE-------------------cC---hHHHHHHHHHHHhCCCeeEE
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFR-------------------DD---VDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~-------------------d~---~~~~~~~~~~~~~l~w~~~~ 593 (626)
. +..+|-.+..+|.|+|-++.. |+ ..++.++.+.++.+.|.+.-
T Consensus 156 S------L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 156 S------LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred h------HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 3 456899999999999988874 32 35688999999999999873
No 406
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.02 E-value=0.33 Score=49.08 Aligned_cols=152 Identities=21% Similarity=0.211 Sum_probs=89.5
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhh--hCCCeEEEEeccCccCc---ccHH-HHHHhcc-
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAAL--IDFPVWVMNVVPAEAKI---NTLG-VIYERGL- 515 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l--~~~~v~~mnv~~~~~~~---~~l~-~~~~rgl- 515 (626)
..+..+.|.+|+-.-..+...+.. . -.+++|+|+|-|-=|-=| +.... +|+-+|.-. +.|+ ++.|=||
T Consensus 43 ~~~~~e~~~rHilDSl~~~~~~~~-~-~~~~~DIGSGaGfPGipLAI~~p~~---~vtLles~~Kk~~FL~~~~~eL~L~ 117 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLPYLDG-K-AKRVLDIGSGAGFPGIPLAIAFPDL---KVTLLESLGKKIAFLREVKKELGLE 117 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhhcccc-c-CCEEEEeCCCCCCchhhHHHhccCC---cEEEEccCchHHHHHHHHHHHhCCC
Confidence 344578999998755554443322 1 478999999988544433 33333 344444321 2333 3344455
Q ss_pred -cceeccccccCCCCC--Cc-cceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE---EcChHHHHHHHHHHHhCC
Q 006905 516 -VGTYTNWCEAMSTYP--RT-YDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF---RDDVDELVKVKRIIDALK 588 (626)
Q Consensus 516 -i~~~~~~~e~~~~yp--~t-~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~---~d~~~~~~~~~~~~~~l~ 588 (626)
+.++| .+..+|. .. ||+|-| .+-+++..++.=.-..||+||.++. .-..+.+..+++....+.
T Consensus 118 nv~i~~---~RaE~~~~~~~~~D~vts-------RAva~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~ 187 (215)
T COG0357 118 NVEIVH---GRAEEFGQEKKQYDVVTS-------RAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLG 187 (215)
T ss_pred CeEEeh---hhHhhcccccccCcEEEe-------ehccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhc
Confidence 34555 4555554 23 999998 2334555555555799999999753 445567888888888888
Q ss_pred CeeEEeecCCCCC-CcceEEEE
Q 006905 589 WQSQIVDHEDGPL-EREKLLFA 609 (626)
Q Consensus 589 w~~~~~~~e~~~~-~~e~~l~~ 609 (626)
+....+..-.-|. ..++.|+.
T Consensus 188 ~~~~~~~~~~~p~~~~~r~l~i 209 (215)
T COG0357 188 GQVEKVFSLTVPELDGERHLVI 209 (215)
T ss_pred CcEEEEEEeecCCCCCceEEEE
Confidence 8887554333332 23444443
No 407
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=94.99 E-value=0.18 Score=55.15 Aligned_cols=109 Identities=10% Similarity=0.102 Sum_probs=69.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c--cceeccccccCCC-CCCccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L--VGTYTNWCEAMST-YPRTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l--i~~~~~~~e~~~~-yp~t~Dlih~~~~f~ 543 (626)
++|||++||+|.|+..|+.++. .|+.+|.++..++.+.+.- + +..+..=.+.+.. .-..||+|..+==
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP-- 309 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP-- 309 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC--
Confidence 5799999999999999998754 7899999988988777643 2 1222211111111 1145898877422
Q ss_pred cCCCCCCH-HHHHHHhhhhccCCcEEEEEcChH-HHHHHHHHHHhCCCeeE
Q 006905 544 LYKDRCET-EDILLEMDRILRPEGGVIFRDDVD-ELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 544 ~~~~~c~~-~~~l~E~dRiLRPgG~~i~~d~~~-~~~~~~~~~~~l~w~~~ 592 (626)
|..+ +.++..+. -++|++.++++-... ....++.+ -.|+++
T Consensus 310 ----r~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~ 352 (374)
T TIGR02085 310 ----RRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIE 352 (374)
T ss_pred ----CCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence 2222 44544454 379999999986654 45555555 247665
No 408
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.88 E-value=0.44 Score=49.61 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=66.7
Q ss_pred HHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCC
Q 006905 198 IDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLP 270 (626)
Q Consensus 198 i~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lp 270 (626)
+..|..+|...+|. +||+-|.|+|++..+++.. .+...|+.. +..+.+.+.-++.+++ +.+..-|....-
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~-~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHE-TRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecH-HHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 34567777766655 9999999999999888875 577777744 2222222223344543 455555655554
Q ss_pred CC--CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 271 YP--SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 271 f~--d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
|. +..+|.|+.-..- + -.++--++.+||-+|.-+.+
T Consensus 171 F~~ks~~aDaVFLDlPa-P-----w~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 171 FLIKSLKADAVFLDLPA-P-----WEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred ccccccccceEEEcCCC-h-----hhhhhhhHHHhhhcCceEEe
Confidence 43 6789999874422 3 44555566688887754444
No 409
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=94.66 E-value=0.042 Score=56.58 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=46.7
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCCCC-Cccc---eeeec
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMSTYP-RTYD---LIHAD 539 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~yp-~t~D---lih~~ 539 (626)
..-.+|||+|||.|.+++.|+++.- .|+.+|.++.+++.+.++-- +.+++ .++..+| ..|| +|.++
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~---~D~~~~~~~~~d~~~~vvsN 101 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIE---GDALKVDLPDFPKQLKVVSN 101 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEE---CchhcCChhHcCCcceEEEc
Confidence 3457899999999999999998864 48888888889888776521 22333 3445555 4577 66664
No 410
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.64 E-value=0.16 Score=54.84 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=79.4
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEE
Q 006905 188 TMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIG 262 (626)
Q Consensus 188 t~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~ 262 (626)
.+|..+-..=-.++.++.. . +.+|||+=+|.|.|+..++.. .|.++|+.|.... ...+.++.+++. +...
T Consensus 169 v~Fsprl~~ER~Rva~~v~--~--GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~-~L~eNi~LN~v~~~v~~i 243 (341)
T COG2520 169 VYFSPRLSTERARVAELVK--E--GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVE-YLKENIRLNKVEGRVEPI 243 (341)
T ss_pred eEECCCchHHHHHHHhhhc--C--CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHH-HHHHHHHhcCccceeeEE
Confidence 4455544433334555442 2 459999999999999988886 3888999884333 344444455554 4456
Q ss_pred EcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 263 VLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 263 v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+|....+...+.||-|+.+..- ....++....+.|++||.+.+-.
T Consensus 244 ~gD~rev~~~~~~aDrIim~~p~-----~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 244 LGDAREVAPELGVADRIIMGLPK-----SAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred eccHHHhhhccccCCEEEeCCCC-----cchhhHHHHHHHhhcCcEEEEEe
Confidence 77877776555889999986632 33678888999999999998854
No 411
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.62 E-value=0.039 Score=58.04 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEE-cccccC-C-CCCCCeeEE
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGV-LAAERL-P-YPSRAFDMA 279 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v-~d~~~L-p-f~d~sFDlV 279 (626)
.+.++..|||+.+|.|.=+.++++. .+++.|+++.-+. ...+.+.+.|+...... .|.... + .....||.|
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~-~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLK-RLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHH-HHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHH-HHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 3444668999999999777776664 5888999774333 33344455566544333 454443 2 233469999
Q ss_pred Ee----ccc--ccccc---------------ccHHHHHHHHHhcc----cCCeEEEEEeC
Q 006905 280 HC----SRC--LIPWN---------------QFGGIYLIEVDRVL----RPGGYWILSGP 314 (626)
Q Consensus 280 ~~----~~~--l~h~~---------------~~~~~~L~Ei~RvL----KPGG~lvis~p 314 (626)
+. +.. +..-+ .-+..+|..+.+.| ||||+++.++-
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 95 222 11100 00126899999999 99999999863
No 412
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=94.56 E-value=0.13 Score=55.12 Aligned_cols=100 Identities=15% Similarity=0.163 Sum_probs=73.0
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccCCCC
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDR 548 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~ 548 (626)
.+...+|+|+|.|.....+..+--+ +-.+..|.+ -.++.+-.-+ .|+-|--|..|-+-| .=|+|...+++++|.+.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp-~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLP-FVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTDE 252 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC-CceeecCHH-HHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCChH
Confidence 5888999999999999998774111 233333443 2233332222 456666678888877 33599999999999985
Q ss_pred CCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 549 CETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 549 c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+...+|.-.-.-|+|||.+|+-|.
T Consensus 253 -dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 253 -DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred -HHHHHHHHHHHhCCCCCEEEEEec
Confidence 778899999999999999999765
No 413
>PRK13699 putative methylase; Provisional
Probab=94.50 E-value=0.48 Score=48.24 Aligned_cols=39 Identities=18% Similarity=0.003 Sum_probs=26.7
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER 513 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r 513 (626)
.|||-=||+|+.+.+-.+.+. |...++.++.-.+++.+|
T Consensus 166 ~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQR 204 (227)
T ss_pred EEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHH
Confidence 599998888887766655544 455666666666666555
No 414
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=94.36 E-value=0.15 Score=52.61 Aligned_cols=114 Identities=16% Similarity=0.263 Sum_probs=69.1
Q ss_pred hcCCCCCceeEEeccCchhhHhhhhhC----CCeEEEEeccCccCcccHHHHHH----hcc---cceec-cccc-cCC-C
Q 006905 463 QLGQSGRYRNILDMNAHLGGFAAALID----FPVWVMNVVPAEAKINTLGVIYE----RGL---VGTYT-NWCE-AMS-T 528 (626)
Q Consensus 463 ~~~~~~~~r~vlD~g~g~G~faa~l~~----~~v~~mnv~~~~~~~~~l~~~~~----rgl---i~~~~-~~~e-~~~-~ 528 (626)
.|.+ | -.||+.|.|.|+++.+|+. .|- |.-.+.++...+.|.+ .|+ +.+.| |.|+ .|. .
T Consensus 37 ~i~p-G--~~VlEaGtGSG~lt~~l~r~v~p~G~----v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 37 DIRP-G--SRVLEAGTGSGSLTHALARAVGPTGH----VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp T--T-T---EEEEE--TTSHHHHHHHHHHTTTSE----EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred CCCC-C--CEEEEecCCcHHHHHHHHHHhCCCeE----EEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 3666 4 4599999999999999974 342 4444555555554433 344 44555 7774 452 2
Q ss_pred CCCccceeeeccccccCCCCCCHHHHHHHhhhhc-cCCcEEEE-EcChHHHHHHHHHHHhCCCee
Q 006905 529 YPRTYDLIHADSVFSLYKDRCETEDILLEMDRIL-RPEGGVIF-RDDVDELVKVKRIIDALKWQS 591 (626)
Q Consensus 529 yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiL-RPgG~~i~-~d~~~~~~~~~~~~~~l~w~~ 591 (626)
....+|.|.. .+. +.-.++--+.++| ||||.+.+ +-..+.+.++-.-++...|.-
T Consensus 110 ~~~~~DavfL-----Dlp---~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 110 LESDFDAVFL-----DLP---DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp -TTSEEEEEE-----ESS---SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred ccCcccEEEE-----eCC---CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 3467887665 332 2234888899999 99999876 566677677766677777754
No 415
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=94.19 E-value=0.075 Score=56.29 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=31.0
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccch
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDT 244 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dl 244 (626)
+.+.+.+...+ +..+||.+||.|.++..+++. .|+++|.++..+
T Consensus 9 ~Evl~~L~~~p--g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al 57 (296)
T PRK00050 9 DEVVDALAIKP--DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI 57 (296)
T ss_pred HHHHHhhCCCC--CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH
Confidence 34444444333 458999999999999999886 377777766433
No 416
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.19 E-value=0.16 Score=55.58 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=45.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC-------------------CcEEEeCCccchHHHHHHHHHH-------------cCCCe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-------------------NIITMSFAPRDTHEAQVQFALE-------------RGVPA 259 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-------------------~V~avdis~~dls~a~i~~A~e-------------rg~~~ 259 (626)
..+|+|+|||+|..+..+... .+..-|+-..|.+.-...+... .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 457999999999665444221 2444566556665544443211 11111
Q ss_pred EEEEc--c-cccCCCCCCCeeEEEeccccccccc
Q 006905 260 LIGVL--A-AERLPYPSRAFDMAHCSRCLIPWNQ 290 (626)
Q Consensus 260 ~~~v~--d-~~~Lpf~d~sFDlV~~~~~l~h~~~ 290 (626)
.+..+ . ...--||+++.+++|++.++ ||..
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl-HWLS 176 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSL-HWLS 176 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccc-eecc
Confidence 22211 1 22233789999999999999 7754
No 417
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=93.96 E-value=0.22 Score=51.62 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHH---cCCCeEEEEccccc
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALE---RGVPALIGVLAAER 268 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~e---rg~~~~~~v~d~~~ 268 (626)
....++.|.+.+.... ...|||||.|.|.++..|++. .+++++.++. ..+...+ ....+.+...|...
T Consensus 15 ~~~~~~~Iv~~~~~~~--~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~-----~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 15 DPNIADKIVDALDLSE--GDTVLEIGPGPGALTRELLKRGKRVIAVEIDPD-----LAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHHHTCGT--TSEEEEESSTTSCCHHHHHHHSSEEEEEESSHH-----HHHHHHHHCTTCSSEEEEES-TTT
T ss_pred CHHHHHHHHHhcCCCC--CCEEEEeCCCCccchhhHhcccCcceeecCcHh-----HHHHHHHHhhhcccceeeecchhc
Confidence 3556677777776553 558999999999999999886 6888988662 3333333 23456777788777
Q ss_pred CCCCC---CCeeEEEeccccccccccHHHHHHHHHhcccC
Q 006905 269 LPYPS---RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRP 305 (626)
Q Consensus 269 Lpf~d---~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKP 305 (626)
+..+. +.-..|+++.. +.- ...++..+...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~NlP---y~i-s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNLP---YNI-SSPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEET---GTG-HHHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEec---ccc-hHHHHHHHhhcccc
Confidence 77554 45667777653 321 25566666664344
No 418
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.94 E-value=0.24 Score=52.49 Aligned_cols=94 Identities=15% Similarity=0.247 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHhhccCCCC---CCEEEEeCCCCchHHHHHh----hCCcEEEeCCccchHHHHHHHHHHcCCC--eEEEE
Q 006905 193 GADAYIDDIGKLINLNDGS---IRTAIDTGCGVASWGAYLL----SRNIITMSFAPRDTHEAQVQFALERGVP--ALIGV 263 (626)
Q Consensus 193 ga~~yi~~L~~ll~l~~~~---~~~VLDIGCGtG~~a~~La----~~~V~avdis~~dls~a~i~~A~erg~~--~~~~v 263 (626)
+.-.|+..|.++|...... ..++||||+|...+-..|. .-.++++|+++..+..++.......++. +.+..
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 4567888888888744322 4589999999884433333 3388999998876666555554432433 33332
Q ss_pred cc-ccc----CCCCCCCeeEEEeccccc
Q 006905 264 LA-AER----LPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 264 ~d-~~~----Lpf~d~sFDlV~~~~~l~ 286 (626)
.. ... +-.++..||+.+|+.-++
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE-----
T ss_pred cCCccccchhhhcccceeeEEecCCccc
Confidence 22 111 112346899999999663
No 419
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=93.92 E-value=0.22 Score=52.02 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=83.8
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchh----hHhhhhhCCCe----EEEEeccCccCcccHHHHH---
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLG----GFAAALIDFPV----WVMNVVPAEAKINTLGVIY--- 511 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G----~faa~l~~~~v----~~mnv~~~~~~~~~l~~~~--- 511 (626)
|--|..+|..--++-...+-.-.. ++.-+|.-+||++| +.|-.|.+... +.+.|.++|.+...|+.|.
T Consensus 71 FFR~~~~f~~l~~~v~p~l~~~~~-~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~ 149 (268)
T COG1352 71 FFRDPEHFEELRDEVLPELVKRKK-GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGI 149 (268)
T ss_pred hccCcHHHHHHHHHHHHHHHhhcc-CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCC
Confidence 555666666433221111111112 24667999999999 56666666532 5679999999977777442
Q ss_pred -H-----hcccc---------------------------eeccccccCCCCCCccceeeeccccccCCCCCCHHHHHHHh
Q 006905 512 -E-----RGLVG---------------------------TYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEM 558 (626)
Q Consensus 512 -~-----rgli~---------------------------~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~ 558 (626)
. +|+.. -+|+.-+.-. +++-||+|-|-.|+-+.... .-..++..+
T Consensus 150 Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~-~q~~il~~f 227 (268)
T COG1352 150 YPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEE-TQERILRRF 227 (268)
T ss_pred CChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHH-HHHHHHHHH
Confidence 1 34311 1232222222 66889999999998876532 346799999
Q ss_pred hhhccCCcEEEEEcChH
Q 006905 559 DRILRPEGGVIFRDDVD 575 (626)
Q Consensus 559 dRiLRPgG~~i~~d~~~ 575 (626)
...|+|||++++-.+..
T Consensus 228 ~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 228 ADSLKPGGLLFLGHSET 244 (268)
T ss_pred HHHhCCCCEEEEccCcc
Confidence 99999999999976554
No 420
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.90 E-value=0.1 Score=53.36 Aligned_cols=103 Identities=10% Similarity=0.106 Sum_probs=62.2
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cc-ee----c------------------
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VG-TY----T------------------ 520 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~-~~----~------------------ 520 (626)
.---+||+||..|-..+.++++ .-.-.|+++|..+..++.|.+.-= ++ +. |
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~-F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKD-FGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHh-hccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3445999999999999999886 111246777777555555544321 00 00 0
Q ss_pred --------cc---------cccCCCCC-Cccceeeeccccc--cCCC-CCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 521 --------NW---------CEAMSTYP-RTYDLIHADSVFS--LYKD-RCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 521 --------~~---------~e~~~~yp-~t~Dlih~~~~f~--~~~~-~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
-| ...|...- +-||+|-|-.+=- |+.+ ...+-..+.-+.|.|+|||++|+--
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 00 00111122 5688888833311 3322 2456778999999999999999963
No 421
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.90 E-value=0.45 Score=51.88 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=70.3
Q ss_pred CEEEEeCCCCchHHHHHhhCC-------------------------------------------cEEEeCCccchHHHHH
Q 006905 213 RTAIDTGCGVASWGAYLLSRN-------------------------------------------IITMSFAPRDTHEAQV 249 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~~-------------------------------------------V~avdis~~dls~a~i 249 (626)
..++|-=||+|++....+-.. +.++|+++..+.. +.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~-Ak 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG-AK 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH-HH
Confidence 579999999998887655432 5699998866654 44
Q ss_pred HHHHHcCCC--eEEEEcccccCCCCCCCeeEEEecccccc-cccc-----H-HHHHHHHHhcccCCeEEEEEeC
Q 006905 250 QFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCLIP-WNQF-----G-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 250 ~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h-~~~~-----~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..|++.|+. +.|.++|+..++-+-+.+|+|+||...-. .... . ..+...+.+.++--+.++++++
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 456666775 77888888888744478999999884311 1111 1 2445567788888888988865
No 422
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.76 E-value=0.66 Score=48.56 Aligned_cols=118 Identities=17% Similarity=0.205 Sum_probs=73.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccH---HHHHHhcc-------cceeccccccCCC-----------
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTL---GVIYERGL-------VGTYTNWCEAMST----------- 528 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l---~~~~~rgl-------i~~~~~~~e~~~~----------- 528 (626)
--+||==|||.|..|-.++.+|. .+-+.+.|--|| .+++.... ....|.||...+.
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34699999999999999999987 445555553332 34444321 1233333222211
Q ss_pred -----------------------CC-----CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE--------Ec
Q 006905 529 -----------------------YP-----RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF--------RD 572 (626)
Q Consensus 529 -----------------------yp-----~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~--------~d 572 (626)
|+ ++||.|-..-..... -++-+.|..|.++|||||++|= .+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA---~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA---ENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech---HHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 22 255544442111111 2577899999999999997764 23
Q ss_pred C-------hH-HHHHHHHHHHhCCCeeEE
Q 006905 573 D-------VD-ELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 573 ~-------~~-~~~~~~~~~~~l~w~~~~ 593 (626)
. .+ .+++|+.+++.+-|++..
T Consensus 211 ~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 211 MSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 2 23 489999999999999864
No 423
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.63 E-value=0.3 Score=52.63 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=41.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHhhC--------------------CcEEEeCCccchHHHHHHHHHHc-----CCCeE-EE
Q 006905 209 DGSIRTAIDTGCGVASWGAYLLSR--------------------NIITMSFAPRDTHEAQVQFALER-----GVPAL-IG 262 (626)
Q Consensus 209 ~~~~~~VLDIGCGtG~~a~~La~~--------------------~V~avdis~~dls~a~i~~A~er-----g~~~~-~~ 262 (626)
....-+|+|+||..|..+..+.+. .|.--|+-..|.+.-...+.... ..+.. ..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344568999999999666554332 24556777777765444333221 12222 22
Q ss_pred Ecc-cccCCCCCCCeeEEEecccccccc
Q 006905 263 VLA-AERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 263 v~d-~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
+.. ...--||+++.|+++++.++ ||.
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~al-HWL 120 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYAL-HWL 120 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-T-TB-
T ss_pred cCchhhhccCCCCceEEEEEechh-hhc
Confidence 222 33333789999999999999 664
No 424
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=93.50 E-value=0.19 Score=48.63 Aligned_cols=69 Identities=22% Similarity=0.197 Sum_probs=41.2
Q ss_pred EEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccC-C-CCCCC-eeEEEecc
Q 006905 214 TAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERL-P-YPSRA-FDMAHCSR 283 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~L-p-f~d~s-FDlV~~~~ 283 (626)
+|||+.||.|..+..+++. .|+++|+++..+. -....|+-.|+ .+.+..+|...+ + +..+. ||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~-~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLE-CAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHH-HHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 7999999999999999997 5999999774433 23334545565 367777774332 2 12222 89999866
No 425
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=93.44 E-value=0.089 Score=55.70 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=48.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++.+. .|+.+|.++++++.+.++ |+ +.+++ .++..++ ..||.|.++.-
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~---~Dal~~~~~~~d~VvaNlP 110 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIE---GDALKTEFPYFDVCVANVP 110 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE---CCHhhhcccccCEEEecCC
Confidence 45799999999999999998754 688899998899887764 22 23343 3444444 57898887543
Q ss_pred c
Q 006905 542 F 542 (626)
Q Consensus 542 f 542 (626)
+
T Consensus 111 Y 111 (294)
T PTZ00338 111 Y 111 (294)
T ss_pred c
Confidence 3
No 426
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.39 E-value=0.18 Score=50.08 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=54.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchH-------HHHHHHHHHcCCCeEEEEc-ccccCC-------CC
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTH-------EAQVQFALERGVPALIGVL-AAERLP-------YP 272 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls-------~a~i~~A~erg~~~~~~v~-d~~~Lp-------f~ 272 (626)
+.+|+|+=-|.|.|+..+... + .+..+.|.++. +.+...+++......-... ..-.++ .+
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~ 127 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVP 127 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccc
Confidence 559999999999999988775 3 34455443331 1111112121111100000 011122 12
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..++|.++.+.-+ | ......+..++++.|||||.+++..+
T Consensus 128 ~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 128 TAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 3345554444433 3 23337899999999999999999754
No 427
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.11 E-value=0.19 Score=49.65 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=59.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--cceeccccccCCCCCCccceeeeccccccCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--VGTYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--i~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
-++|+|+|||+|.+|-+.+-.|.- .|..+|..+..++++.+..- .|-+--.|.+.+.+..-+|.+-.+-=|.....
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 456999999999887666555432 46677777778776654332 23333345677888899998888888887777
Q ss_pred CCCHHHHHH
Q 006905 548 RCETEDILL 556 (626)
Q Consensus 548 ~c~~~~~l~ 556 (626)
+.|.++++.
T Consensus 124 haDr~Fl~~ 132 (198)
T COG2263 124 HADRPFLLK 132 (198)
T ss_pred cCCHHHHHH
Confidence 778777653
No 428
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.07 E-value=0.39 Score=50.31 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=74.3
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHH--hcccceecc-ccccCCC--CC-Cccceeeecc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYE--RGLVGTYTN-WCEAMST--YP-RTYDLIHADS 540 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~--rgli~~~~~-~~e~~~~--yp-~t~Dlih~~~ 540 (626)
-.-++|||+|||.|...-+..+. + -.-.++.+|.++.|++++.. ++.....+. |-..+.. -+ ...|||-++.
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~ 110 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASY 110 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEeh
Confidence 34678999999999765555432 1 13478889999888885322 222222221 2121221 11 3449999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-----HHHHHHHHHHHhCCCeeE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV-----DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-----~~~~~~~~~~~~l~w~~~ 592 (626)
+++.+.+ -....++..+=+-+.+ ++||-|+- +.+..+++.+....+.+.
T Consensus 111 ~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 111 VLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred hhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 9998876 4566677777555555 88886543 467777777755554443
No 429
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.02 E-value=0.97 Score=42.28 Aligned_cols=96 Identities=15% Similarity=0.004 Sum_probs=52.9
Q ss_pred CCCCEEEEeCCCCchHHHHHhh-----C---CcEEEeCCccchHHHHHHHHHHcCCC----eEEEEcccccCCCCCCCee
Q 006905 210 GSIRTAIDTGCGVASWGAYLLS-----R---NIITMSFAPRDTHEAQVQFALERGVP----ALIGVLAAERLPYPSRAFD 277 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~-----~---~V~avdis~~dls~a~i~~A~erg~~----~~~~v~d~~~Lpf~d~sFD 277 (626)
.+...|+|+|||.|.++..|+. . .|+++|..+... +...+.+.+.+.. ..+...+..... .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 3466899999999999999888 3 678888766433 3333344333311 122221111111 144566
Q ss_pred EEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 278 MAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 278 lV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++.- |--.+. ..+|+-+.+ |+-.+++..|
T Consensus 102 ~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 102 ILVGL----HACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred EEEEe----ecccchHHHHHHHHHH---cCCCEEEEcC
Confidence 66653 444444 455555555 6655555444
No 430
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=92.58 E-value=0.54 Score=51.06 Aligned_cols=106 Identities=12% Similarity=0.036 Sum_probs=65.8
Q ss_pred EEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceec-cccccCCC------CC---------
Q 006905 473 ILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYT-NWCEAMST------YP--------- 530 (626)
Q Consensus 473 vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~-~~~e~~~~------yp--------- 530 (626)
|||++||+|.|+.+|++..- .|+.+|.++.+++.+.+.-- +.++. |.-+.+.. ++
T Consensus 201 vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 201 LLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred EEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 99999999999999987743 68999999999988876532 12222 11110110 10
Q ss_pred CccceeeeccccccCCCCCCH-HHHHHHhhhhccCCcEEEEEc-ChHHHHHHHHHHHhCCCeeE
Q 006905 531 RTYDLIHADSVFSLYKDRCET-EDILLEMDRILRPEGGVIFRD-DVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~-~~~l~E~dRiLRPgG~~i~~d-~~~~~~~~~~~~~~l~w~~~ 592 (626)
..||+|.. ... |..+ +.++.- |++|++.++++= +......++.+.++ |++.
T Consensus 278 ~~~d~v~l-----DPP-R~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~ 330 (353)
T TIGR02143 278 YNCSTIFV-----DPP-RAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVE 330 (353)
T ss_pred CCCCEEEE-----CCC-CCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEE
Confidence 12576555 333 3333 344443 456999999984 44456667766655 7765
No 431
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=92.45 E-value=0.055 Score=47.68 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=37.8
Q ss_pred EEeCCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CC-CCCCCeeEEEeccc
Q 006905 216 IDTGCGVASWGAYLLSR-------NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LP-YPSRAFDMAHCSRC 284 (626)
Q Consensus 216 LDIGCGtG~~a~~La~~-------~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-f~d~sFDlV~~~~~ 284 (626)
||||+..|..+..+++. .++++|..+. .+...+..++.+. .+.+..++... ++ +++++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68998899777776653 3778887653 1122222322222 35566555332 22 33578999997542
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
|-.+.....+..+.+.|+|||.+++-
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 33333467889999999999999885
No 432
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.44 E-value=0.4 Score=50.00 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=49.7
Q ss_pred CCCEEEEeCCCCc--hHHHHHhh-----CCcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCC--CC----CCC
Q 006905 211 SIRTAIDTGCGVA--SWGAYLLS-----RNIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLP--YP----SRA 275 (626)
Q Consensus 211 ~~~~VLDIGCGtG--~~a~~La~-----~~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lp--f~----d~s 275 (626)
.++..||||||-= ......++ ..|..+|.+|.-+..+..-+ ..... ..+..+|..+.. +. .+-
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL--~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALL--ADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHH--TT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhh--cCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 3678999999953 23333433 27899999874333222111 12222 456666643211 00 112
Q ss_pred ee-----EEEeccccccccc--cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 276 FD-----MAHCSRCLIPWNQ--FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 276 FD-----lV~~~~~l~h~~~--~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+| .|+...++|+..+ ++..++..+...|.||.+|+|+..
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 22 3444555655544 447899999999999999999853
No 433
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.43 E-value=0.84 Score=49.10 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=53.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEcccccCCCC-CCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP---ALIGVLAAERLPYP-SRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~---~~~~v~d~~~Lpf~-d~sFDlV~~~ 282 (626)
..+|||+|.|.|.-...+-+- .++.++.++ .+.+---..+..-... ..-......+++++ ...|++|+..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 457999999998655444332 333344333 1211111122111110 00011113355554 3457777765
Q ss_pred cccccccccH--HHHHHHHHhcccCCeEEEEEeC
Q 006905 283 RCLIPWNQFG--GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 283 ~~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.-|.|....- ...++.+..+++|||.|+|..+
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 5554432211 2478889999999999999865
No 434
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=91.90 E-value=0.33 Score=53.38 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=81.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----ccceeccc--cccCCCC---C---Cccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----LVGTYTNW--CEAMSTY---P---RTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----li~~~~~~--~e~~~~y---p---~t~Dlih 537 (626)
-+.|||+=|.+|||+-+.+.-|. -.|+.+|.+...|+.+.+.- +-+.-|.| ...|.-+ - .+||+|-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 46799999999999999888876 25777899988888776653 32222433 2223322 2 3999998
Q ss_pred ecc-ccccCCCC-----CCHHHHHHHhhhhccCCcEEEEEcC------hHHHHHHHHHHHhCCCeeEEe
Q 006905 538 ADS-VFSLYKDR-----CETEDILLEMDRILRPEGGVIFRDD------VDELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 538 ~~~-~f~~~~~~-----c~~~~~l~E~dRiLRPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~ 594 (626)
.+= .|...+.. =+...++...-+||+|||.++++-. ...+..|.+-+..+.=..++.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 742 34433221 1334688999999999999999742 345666666666664444444
No 435
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=91.62 E-value=0.61 Score=47.37 Aligned_cols=132 Identities=16% Similarity=0.285 Sum_probs=78.6
Q ss_pred ceeEEeccCchhhHhhhhhC----CC-eEEEEeccCccCcccHHHHHHhc-ccceeccccccCCCCCCcccee--eeccc
Q 006905 470 YRNILDMNAHLGGFAAALID----FP-VWVMNVVPAEAKINTLGVIYERG-LVGTYTNWCEAMSTYPRTYDLI--HADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~----~~-v~~mnv~~~~~~~~~l~~~~~rg-li~~~~~~~e~~~~yp~t~Dli--h~~~~ 541 (626)
-..||-+||..|+...++.+ .| |+.+...|.-.. +.+.++-.|- +|.++.| ..+|..|-.+ ..+-+
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~r-dL~~la~~R~NIiPIl~D-----Ar~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMR-DLLNLAKKRPNIIPILED-----ARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHH-HHHHHHHHSTTEEEEES------TTSGGGGTTTS--EEEE
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHH-HHHHHhccCCceeeeecc-----CCChHHhhcccccccEE
Confidence 45799999999999988864 33 567777777664 7777887774 4677766 4455333211 12333
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc----------ChHHHHHHHHHHHhCCCeeE-EeecCCCCCCcceEEEE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD----------DVDELVKVKRIIDALKWQSQ-IVDHEDGPLEREKLLFA 609 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d----------~~~~~~~~~~~~~~l~w~~~-~~~~e~~~~~~e~~l~~ 609 (626)
|......-..+-+++-++.-||+||+++|.- +.++...-.+.++.-..+.. ..+.| |+.++.++|.
T Consensus 148 ~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le--Py~~dH~~vv 224 (229)
T PF01269_consen 148 FQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE--PYERDHAMVV 224 (229)
T ss_dssp EEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T--TTSTTEEEEE
T ss_pred EecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC--CCCCCcEEEE
Confidence 4443344344567888899999999999962 22333333333444445543 44455 5556655554
No 436
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=91.57 E-value=0.56 Score=49.41 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=73.7
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccc-------------cCCCCC
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCE-------------AMSTYP 530 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e-------------~~~~yp 530 (626)
+.. +..|.||=+|-|.||.++.+++.+- +-.++-++..+..++++.+.= +..|.++. -...++
T Consensus 72 ~ah-~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l--~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 72 LAH-PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYL--PEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhC-CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhc--cCcccccCCCceEEEeccHHHHHHhCC
Confidence 344 5568999999999999999998852 335555566556777665543 44442222 112256
Q ss_pred CccceeeeccccccCCCCCCH-HHHHHHhhhhccCCcEEEEEcC-h----HHHHHHHHHHHhC
Q 006905 531 RTYDLIHADSVFSLYKDRCET-EDILLEMDRILRPEGGVIFRDD-V----DELVKVKRIIDAL 587 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~-~~~l~E~dRiLRPgG~~i~~d~-~----~~~~~~~~~~~~l 587 (626)
++||+|-.+.-=......-.. ........|.|+|+|.++..-. . +.+..+.+..+++
T Consensus 148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~v 210 (282)
T COG0421 148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRV 210 (282)
T ss_pred CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhh
Confidence 799999873321110100011 4577788999999999999711 1 3344555555666
No 437
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=91.39 E-value=0.37 Score=48.11 Aligned_cols=111 Identities=17% Similarity=0.183 Sum_probs=56.5
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----------c-c--cceeccccccCCCCCCccceeee
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----------G-L--VGTYTNWCEAMSTYPRTYDLIHA 538 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----------g-l--i~~~~~~~e~~~~yp~t~Dlih~ 538 (626)
..-|+||||||+-..|..+-- -.-+.+.+.-...-..+-|| | + |++++..|--| .|+-|..-..
T Consensus 63 efaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kgqL 139 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKGQL 139 (249)
T ss_pred eEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhccc
Confidence 468999999999888876510 01133333321122222222 1 1 56666544332 2544442222
Q ss_pred ccc---ccc--CC-----CCCCHHHHHHHhhhhccCCcEEEE-EcChHHHHHHHHHHH
Q 006905 539 DSV---FSL--YK-----DRCETEDILLEMDRILRPEGGVIF-RDDVDELVKVKRIID 585 (626)
Q Consensus 539 ~~~---f~~--~~-----~~c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~~~~~~~ 585 (626)
+-. |.. .+ .|---..+|.|.--+||+||.++. +|-++...-+.+.+.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e 197 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLE 197 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHH
Confidence 222 221 11 111113588999999999999886 455554444444433
No 438
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=91.33 E-value=0.67 Score=49.76 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=46.9
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh-----cc---cceec--cccccCCCC--C-Ccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER-----GL---VGTYT--NWCEAMSTY--P-RTY 533 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r-----gl---i~~~~--~~~e~~~~y--p-~t~ 533 (626)
+.-.+|||+|||.|+.+..|+.+ .-| +++++|.++..++.+.+. ++ |.+.+ +-...|..+ + ..|
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCce
Confidence 45677999999999998888654 224 688888887777765532 23 22222 111112222 3 689
Q ss_pred ceeeeccccc
Q 006905 534 DLIHADSVFS 543 (626)
Q Consensus 534 Dlih~~~~f~ 543 (626)
|+|-|+==|-
T Consensus 191 DlivcNPPf~ 200 (321)
T PRK11727 191 DATLCNPPFH 200 (321)
T ss_pred EEEEeCCCCc
Confidence 9999976655
No 439
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=91.22 E-value=2.5 Score=43.57 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=92.9
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCC-eEEEEeccCccCcccHHHHHHhcc------
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFP-VWVMNVVPAEAKINTLGVIYERGL------ 515 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~-v~~mnv~~~~~~~~~l~~~~~rgl------ 515 (626)
.+.|...+++.+.+..-++ . ...++||=+|.|.|+.++.|++.+ + .+|+-+|..+..++++.+---
T Consensus 55 ~e~de~~y~e~l~h~~~~~----~-~~p~~VLiiGgG~G~~~~ell~~~~~--~~i~~VEiD~~Vv~~a~~~f~~~~~~~ 127 (246)
T PF01564_consen 55 SERDEFIYHEMLVHPPLLL----H-PNPKRVLIIGGGDGGTARELLKHPPV--ESITVVEIDPEVVELARKYFPEFSEGL 127 (246)
T ss_dssp ETTTHHHHHHHHHHHHHHH----S-SST-EEEEEESTTSHHHHHHTTSTT---SEEEEEES-HHHHHHHHHHTHHHHTTG
T ss_pred EEechHHHHHHHhhhHhhc----C-CCcCceEEEcCCChhhhhhhhhcCCc--ceEEEEecChHHHHHHHHhchhhcccc
Confidence 4556566666665433322 2 358999999999999999999886 4 355566666678887755310
Q ss_pred ----cceec-cccccCCCCCC-ccceeeeccccccCCC-CCCHHHHHHHhhhhccCCcEEEEEc-----ChHHHHHHHHH
Q 006905 516 ----VGTYT-NWCEAMSTYPR-TYDLIHADSVFSLYKD-RCETEDILLEMDRILRPEGGVIFRD-----DVDELVKVKRI 583 (626)
Q Consensus 516 ----i~~~~-~~~e~~~~yp~-t~Dlih~~~~f~~~~~-~c~~~~~l~E~dRiLRPgG~~i~~d-----~~~~~~~~~~~ 583 (626)
+.+++ |=-+-+...++ +||+|-.+..-..... .---...+..+.|.|+|||.+++.- ..+....+.+.
T Consensus 128 ~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~t 207 (246)
T PF01564_consen 128 DDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKT 207 (246)
T ss_dssp GSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHH
T ss_pred CCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHH
Confidence 11222 11111234566 9999987333211110 0111568899999999999999862 23455666666
Q ss_pred HHhCCCeeEEeecCCC--CCCcceEEEEEecc
Q 006905 584 IDALKWQSQIVDHEDG--PLEREKLLFAVKLY 613 (626)
Q Consensus 584 ~~~l~w~~~~~~~e~~--~~~~e~~l~~~K~~ 613 (626)
++...-.+..+-.--- +..---++++.|..
T Consensus 208 l~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 208 LRSVFPQVKPYTAYVPSYGSGWWSFASASKDI 239 (246)
T ss_dssp HHTTSSEEEEEEEECTTSCSSEEEEEEEESST
T ss_pred HHHhCCceEEEEEEcCeecccceeEEEEeCCC
Confidence 6666666554321111 11123466666654
No 440
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=91.05 E-value=0.22 Score=49.07 Aligned_cols=92 Identities=20% Similarity=0.151 Sum_probs=61.1
Q ss_pred CEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc----C-CCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER----G-VPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er----g-~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
.++.|+|+|+|.++...++. .|++++.+|. ....|.++ | .+..+.++|+....| ...|+|+|-..=
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk-----~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPK-----RARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcH-----HHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 37999999999777665554 7899988663 33344444 2 245667777777777 468999994421
Q ss_pred cc-ccccHHHHHHHHHhcccCCeEEEE
Q 006905 286 IP-WNQFGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 286 ~h-~~~~~~~~L~Ei~RvLKPGG~lvi 311 (626)
.- ..+.....+..+...||-.+.++=
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCcccc
Confidence 11 122235677777788888888764
No 441
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.92 E-value=1.7 Score=42.18 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=61.7
Q ss_pred eCCCCchHHHHHhhC-----CcEEEeCCccch-------HHHHHHHHHHcCCCeEEEEcccccCC----CCCCCeeEEEe
Q 006905 218 TGCGVASWGAYLLSR-----NIITMSFAPRDT-------HEAQVQFALERGVPALIGVLAAERLP----YPSRAFDMAHC 281 (626)
Q Consensus 218 IGCGtG~~a~~La~~-----~V~avdis~~dl-------s~a~i~~A~erg~~~~~~v~d~~~Lp----f~d~sFDlV~~ 281 (626)
||=|.=+|+..|++. ++++++++..+. ....++..++.|+.+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 566777888888875 577777754321 112233334566655554 3655554 35678999999
Q ss_pred ccccccccc-----------cH-HHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQ-----------FG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~-----------~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++....... .. ..+|..+.++|+++|.+.|+.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 886433110 01 368899999999999999985
No 442
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=0.43 Score=47.98 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=58.7
Q ss_pred ceeEEeccCchhhHhhhhh----CCCeEEEEeccCccCcccHHHH----------------HHhcccceeccccccCCCC
Q 006905 470 YRNILDMNAHLGGFAAALI----DFPVWVMNVVPAEAKINTLGVI----------------YERGLVGTYTNWCEAMSTY 529 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~----~~~v~~mnv~~~~~~~~~l~~~----------------~~rgli~~~~~~~e~~~~y 529 (626)
--+.||+|.|+|-+.+.++ ..+. |+++++..++.++.. +++|=+.+.-+-| ..-|
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~---~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg--r~g~ 157 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGG---NVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG--RKGY 157 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCc---cccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc--cccC
Confidence 3468999999998776554 3344 568888776665533 3344333222211 1225
Q ss_pred C--CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 530 P--RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 530 p--~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
| .-||-||+. .....+..|+=-.|+|||.+++--.
T Consensus 158 ~e~a~YDaIhvG---------Aaa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 158 AEQAPYDAIHVG---------AAASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CccCCcceEEEc---------cCccccHHHHHHhhccCCeEEEeec
Confidence 5 889999992 3446788888889999999998643
No 443
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=90.77 E-value=0.77 Score=47.71 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=46.6
Q ss_pred CCccceeeeccccc-cCCCCCCHHHHHHHhhhhccCCcEEEEEcCh---------------H-HHHHHHHHHHhCCCeeE
Q 006905 530 PRTYDLIHADSVFS-LYKDRCETEDILLEMDRILRPEGGVIFRDDV---------------D-ELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 530 p~t~Dlih~~~~f~-~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~---------------~-~~~~~~~~~~~l~w~~~ 592 (626)
|+.||.|-+...+. ...++-.....|..|-+.|||||++|+..-. . ..+.|++.++.--..+.
T Consensus 156 p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~ 235 (256)
T PF01234_consen 156 PPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIE 235 (256)
T ss_dssp -SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEE
T ss_pred ccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEE
Confidence 56799887744333 2233334456999999999999999996211 0 13455566666666665
Q ss_pred EeecCCCCCC--cceEEEEEe
Q 006905 593 IVDHEDGPLE--REKLLFAVK 611 (626)
Q Consensus 593 ~~~~e~~~~~--~e~~l~~~K 611 (626)
.........+ ..=+++|||
T Consensus 236 ~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 236 DLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEEG-TTTB---EEEEEEEEE
T ss_pred ecccccCcCCCCcEEEEEEeC
Confidence 5443222222 233455555
No 444
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.74 E-value=0.47 Score=48.27 Aligned_cols=108 Identities=13% Similarity=0.196 Sum_probs=64.0
Q ss_pred CceecCCCC-CCCCCcHHHHHHHHHHhhccCC----CCCCEEEEeCCCCchHH----HHHhhCCcEEEeCCccchHHHHH
Q 006905 179 DRFRFPGGG-TMFPNGADAYIDDIGKLINLND----GSIRTAIDTGCGVASWG----AYLLSRNIITMSFAPRDTHEAQV 249 (626)
Q Consensus 179 e~~~Fp~gg-t~F~~ga~~yi~~L~~ll~l~~----~~~~~VLDIGCGtG~~a----~~La~~~V~avdis~~dls~a~i 249 (626)
.++.+|.+- ----.|...|+..|+++|.... +...++||||.|.--+- .+.-.-.+++.|+++..++.++.
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ 120 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKA 120 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHH
Confidence 456666542 1123567789999999997432 34568999998876332 22233367888888877776665
Q ss_pred HHHHHcCCC--eEEEEc-cccc-CC---CCCCCeeEEEeccccc
Q 006905 250 QFALERGVP--ALIGVL-AAER-LP---YPSRAFDMAHCSRCLI 286 (626)
Q Consensus 250 ~~A~erg~~--~~~~v~-d~~~-Lp---f~d~sFDlV~~~~~l~ 286 (626)
......+.. +.+... +... ++ -..+.||++.|+..+|
T Consensus 121 ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 121 IISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred HHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcc
Confidence 555443332 222211 1111 11 1256899999999763
No 445
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=90.58 E-value=1.7 Score=47.46 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=65.0
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccC-CCC---------------
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAM-STY--------------- 529 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~-~~y--------------- 529 (626)
.|||++||+|+|+.+|++..- .|+.+|.++.+++.+.+. |+ +.+++.=.+.+ ...
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred eEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 499999999999999987633 688999998999877764 32 22222111111 000
Q ss_pred CCccceeeeccccccCCCCCC-HHHHHHHhhhhccCCcEEEEEcChHH-HHHHHHHHHhCCCeeE
Q 006905 530 PRTYDLIHADSVFSLYKDRCE-TEDILLEMDRILRPEGGVIFRDDVDE-LVKVKRIIDALKWQSQ 592 (626)
Q Consensus 530 p~t~Dlih~~~~f~~~~~~c~-~~~~l~E~dRiLRPgG~~i~~d~~~~-~~~~~~~~~~l~w~~~ 592 (626)
...||+|-.+ .. |-. .+.++. .|++|++.++++=.... ...++.+.+ .|++.
T Consensus 286 ~~~~D~v~lD-----PP-R~G~~~~~l~---~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~ 339 (362)
T PRK05031 286 SYNFSTIFVD-----PP-RAGLDDETLK---LVQAYERILYISCNPETLCENLETLSQ--THKVE 339 (362)
T ss_pred CCCCCEEEEC-----CC-CCCCcHHHHH---HHHccCCEEEEEeCHHHHHHHHHHHcC--CcEEE
Confidence 0147887762 21 222 134443 44458999999855544 444666654 57665
No 446
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=90.51 E-value=1.1 Score=48.30 Aligned_cols=108 Identities=15% Similarity=0.151 Sum_probs=70.7
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cc---eeccccccCCCCC-Cccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VG---TYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~---~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-+|||==||+|||.-..-=.|+ ++++.|....|+.-+. ..| |. ++-.|--...++| .++|.|-++-=.
T Consensus 199 ~~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak-~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 199 ELVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAK-INLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred CEeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhh-hhhhhhCcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 3799999999999655444455 8999999988877532 222 11 2222223334466 569999987655
Q ss_pred ccCC--CCCC----HHHHHHHhhhhccCCcEEEEEcChHHHHHHHH
Q 006905 543 SLYK--DRCE----TEDILLEMDRILRPEGGVIFRDDVDELVKVKR 582 (626)
Q Consensus 543 ~~~~--~~c~----~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~ 582 (626)
.... .+-. +...|.++.++|++||++++--+.+....+++
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~ 320 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEE 320 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhh
Confidence 5322 2222 45688999999999999999776544444443
No 447
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=90.39 E-value=0.36 Score=54.14 Aligned_cols=66 Identities=26% Similarity=0.356 Sum_probs=46.6
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccc
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAE 267 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~ 267 (626)
..+.+.+.+.. ...+||+-||||.++..+++. .|+++++++.+... +...|..+|+. +.|.++-++
T Consensus 373 s~i~e~~~l~~--~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~d-A~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 373 STIGEWAGLPA--DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVED-AEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHhCCCC--CcEEEEEeecCCceehhhhccccceeeeecChhhcch-hhhcchhcCccceeeeecchh
Confidence 34455554444 358999999999999999997 89999998865543 44456666764 667666333
No 448
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.26 E-value=3.8 Score=41.17 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=65.9
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC----CCCCCeeEEEe
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP----YPSRAFDMAHC 281 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp----f~d~sFDlV~~ 281 (626)
..+.+||=+|+.+|+...+..+- .+.++++++.... ..+..|.+|.- +.-...|+ +.| .--+..|+|++
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~N-i~PIL~DA-~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRPN-IIPILEDA-RKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCCC-ceeeeccc-CCcHHhhhhcccccEEEE
Confidence 34569999999999887777763 3889999996554 56777776642 11122333 333 12346899987
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
--+= +++...+..++...||+||+++++.
T Consensus 152 DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 152 DVAQ---PNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred ecCC---chHHHHHHHHHHHhcccCCeEEEEE
Confidence 4421 2223677888999999999888864
No 449
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=90.18 E-value=0.31 Score=45.66 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=42.5
Q ss_pred HHHHHHHhhhhcC----CCCCceeEEeccCchhhHhhhhhC-----CCeEEEEeccCccCcccHHHHHHhc
Q 006905 453 RLSYYKTMNNQLG----QSGRYRNILDMNAHLGGFAAALID-----FPVWVMNVVPAEAKINTLGVIYERG 514 (626)
Q Consensus 453 ~v~~y~~~~~~~~----~~~~~r~vlD~g~g~G~faa~l~~-----~~v~~mnv~~~~~~~~~l~~~~~rg 514 (626)
.|.++..++..+. .......|+|+|||-|-++..|+. . ...+|+.+|..+..++.+.+|-
T Consensus 5 Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~ 73 (141)
T PF13679_consen 5 EIERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRA 73 (141)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHH
Confidence 3555555554321 125688999999999999999988 4 3348888998877777666554
No 450
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=89.96 E-value=7.8 Score=39.93 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCc-hHHHHHhh--CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEccc-ccC
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVA-SWGAYLLS--RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAA-ERL 269 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG-~~a~~La~--~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~-~~L 269 (626)
++..+.+..-+.....-.+++||=+|=..- +++..|.. ..|+++|++..-+ ....+.|.+.|+++.....|. ..|
T Consensus 27 ~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~i~~~~~DlR~~L 105 (243)
T PF01861_consen 27 PETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLPIEAVHYDLRDPL 105 (243)
T ss_dssp HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT--EEEE---TTS--
T ss_pred HHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCceEEEEecccccC
Confidence 344444444444444445779999986655 55655544 3899999987433 345567788899887777774 335
Q ss_pred CC-CCCCeeEEEeccccccccccH-HHHHHHHHhcccCCe-EEEEE
Q 006905 270 PY-PSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGG-YWILS 312 (626)
Q Consensus 270 pf-~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG-~lvis 312 (626)
|- -.++||++++.. ++.... ..++......||.-| ..+++
T Consensus 106 P~~~~~~fD~f~TDP---PyT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 106 PEELRGKFDVFFTDP---PYTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp -TTTSS-BSEEEE------SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred CHHHhcCCCEEEeCC---CCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 52 247899999977 444333 678888888998766 44443
No 451
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=89.95 E-value=2.4 Score=48.37 Aligned_cols=143 Identities=14% Similarity=0.128 Sum_probs=83.2
Q ss_pred CceeEEeccCchhhHhhhhhCCC-------eEEEEeccCccCcccHHHHHHh----c-c-cceec-c-ccccCC---CCC
Q 006905 469 RYRNILDMNAHLGGFAAALIDFP-------VWVMNVVPAEAKINTLGVIYER----G-L-VGTYT-N-WCEAMS---TYP 530 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~-------v~~mnv~~~~~~~~~l~~~~~r----g-l-i~~~~-~-~~e~~~---~yp 530 (626)
...+|||-+||.|+|..+++++- -...|+...|..+..+..+..+ + + +.+.+ + .|..+. .+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 34579999999999999887531 1346889999887777766543 1 1 11121 1 222221 233
Q ss_pred CccceeeeccccccCCC--------------------------------CCC-----------HHHHHHH-hhhhccCCc
Q 006905 531 RTYDLIHADSVFSLYKD--------------------------------RCE-----------TEDILLE-MDRILRPEG 566 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~--------------------------------~c~-----------~~~~l~E-~dRiLRPgG 566 (626)
..||+|-++==|...+. .|+ ...++.| ..++|+|||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 68999888765553221 111 1124556 489999999
Q ss_pred EEEEEcCh-----HHHHHHHH-HHHhCCCeeEEeecCC------CCCCcceEEEEEec
Q 006905 567 GVIFRDDV-----DELVKVKR-IIDALKWQSQIVDHED------GPLEREKLLFAVKL 612 (626)
Q Consensus 567 ~~i~~d~~-----~~~~~~~~-~~~~l~w~~~~~~~e~------~~~~~e~~l~~~K~ 612 (626)
++.+=-+. ..-..+++ +++..+.... ++-++ +-..+-.|++.+|.
T Consensus 191 ~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I-~~f~~~~~lF~~v~~~~~i~~l~k~ 247 (524)
T TIGR02987 191 YVSIISPASWLGDKTGENLREYIFNNRLINCI-QYFQEEAKLFSGVNQATSIIHLNSG 247 (524)
T ss_pred EEEEEEChHHhcCccHHHHHHHHHhCCeeEEE-EECCccccCcCCCCcceEEEEEECC
Confidence 98874333 22345665 4565555543 33322 22334567777764
No 452
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=89.85 E-value=0.22 Score=52.75 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=48.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----ccceeccccccCCCCC-C---ccceeeec
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----LVGTYTNWCEAMSTYP-R---TYDLIHAD 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----li~~~~~~~e~~~~yp-~---t~Dlih~~ 539 (626)
.+++|++||.||++.++++..=-...|+++|.++.++..+.++- =+-.+|+....+..+. . ++|.|.++
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 37999999999999999976200136999999999999988762 2456664333332232 3 78987764
No 453
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.76 E-value=1.2 Score=48.06 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=61.0
Q ss_pred CCCCEEEEeCCC-CchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 210 GSIRTAIDTGCG-VASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 210 ~~~~~VLDIGCG-tG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
+++.+|+=+|+| .|..+..+++. .|+++|. ++...+.|++.|....+.-.+.....--.+.||+|+..-.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~-----~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~- 238 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITR-----SEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG- 238 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeC-----ChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-
Confidence 345588888877 34777777773 6777766 4456778888876554432222222211224999987442
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
...+....+.||+||.+++.+.+
T Consensus 239 -------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -------hhhHHHHHHHHhcCCEEEEECCC
Confidence 34677888999999999999854
No 454
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=89.44 E-value=1.7 Score=47.90 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=66.0
Q ss_pred cCCCCCCEEEEeCCCCchH----HHHHhhCC-cEEEeCCccchHHHHHHHHHHcCCCeEE-EEcccccCC---CCCCCee
Q 006905 207 LNDGSIRTAIDTGCGVASW----GAYLLSRN-IITMSFAPRDTHEAQVQFALERGVPALI-GVLAAERLP---YPSRAFD 277 (626)
Q Consensus 207 l~~~~~~~VLDIGCGtG~~----a~~La~~~-V~avdis~~dls~a~i~~A~erg~~~~~-~v~d~~~Lp---f~d~sFD 277 (626)
+.+.++.+|||+.+..|.= ++.|...+ |.+.|....- -....+.+.+.|+...+ ...|...+| |+. +||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r-~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENR-LKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHH-HHHHHHHHHHhCCCceEEEccCcccccccccCc-ccc
Confidence 4566677999999999943 33334444 5566664422 23344455566776554 334555554 444 899
Q ss_pred EEE----ecc--ccc-----ccc----------ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 278 MAH----CSR--CLI-----PWN----------QFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 278 lV~----~~~--~l~-----h~~----------~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
-|. |+. ++. -+. .-+.++|......+++||+|+.++-.+
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 998 444 110 000 011478888999999999999986433
No 455
>PRK11524 putative methyltransferase; Provisional
Probab=89.26 E-value=3.8 Score=42.99 Aligned_cols=211 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred CCCCCeeEEEecccccc---------------ccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHH
Q 006905 271 YPSRAFDMAHCSRCLIP---------------WNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKE 335 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h---------------~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~ 335 (626)
+++++||+|++.....- +.+....+|.++.|+|||||.+++. ...+.+...
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~--------------~~~~~~~~~ 88 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM--------------NSTENMPFI 88 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE--------------cCchhhhHH
Q ss_pred HHHHHHHHHhhchhhhcccccEEEEeccCccccccccccCCCCCCCCCCCCCCchhhhhccccccccccCCccccccCCc
Q 006905 336 QTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGE 415 (626)
Q Consensus 336 ~~~ie~l~~~l~w~~v~~~~~~aiw~KP~~~~~c~~~~~~~~~p~~C~~~~~d~~wy~~l~~ci~~~p~~~~~~~~~~~~ 415 (626)
...++ ..+.-.+..||+|+.........-.....+-++-..+ ...|+.....+..+..............
T Consensus 89 ~~~~~---------~~f~~~~~iiW~k~~~~~~~~~~~~~~~e~i~~~~K~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 158 (284)
T PRK11524 89 DLYCR---------KLFTIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKD-AKNYTFNGDAILVEAKTGAKRALIDYRK 158 (284)
T ss_pred HHHHh---------cCcceEEEEEEEeCCCCCcccCcCCCCccEEEEEEcC-cccccccHHHhcccccccchhccccccc
Q ss_pred cccCCcccccCCCccccCcccCCChhhc-hhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEE
Q 006905 416 LAKWPQRLNAVPPRISKGTVKGITPEIF-QQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWV 494 (626)
Q Consensus 416 ~~~wp~rl~~~p~~~~~~~~~~~~~~~f-~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~ 494 (626)
...-+-.....|..+..-...+...+.+ .+-++.=..-+++...+...-+. .|||-=||+|+-+.+-.+.+-
T Consensus 159 ~~~~~~~~~~~~~~vw~~~~~~~~~~~~~~HPt~kP~~L~erlI~~~S~~GD-----~VLDPF~GSGTT~~AA~~lgR-- 231 (284)
T PRK11524 159 NPPQPYNTQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGD-----IVLDPFAGSFTTGAVAKASGR-- 231 (284)
T ss_pred cccccCCCCCCCCCEEEeCCccccccccccCcccChHHHHHHHHHHhCCCCC-----EEEECCCCCcHHHHHHHHcCC--
Q ss_pred EEeccCccCcccHHHHHHh
Q 006905 495 MNVVPAEAKINTLGVIYER 513 (626)
Q Consensus 495 mnv~~~~~~~~~l~~~~~r 513 (626)
+.++++.++.-.+++.+|
T Consensus 232 -~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 232 -KFIGIEINSEYIKMGLRR 249 (284)
T ss_pred -CEEEEeCCHHHHHHHHHH
No 456
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=89.11 E-value=0.43 Score=52.42 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=58.5
Q ss_pred eeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----ccc--ceec-cccccCCCCCCccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GLV--GTYT-NWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gli--~~~~-~~~e~~~~yp~t~Dlih~~~~f 542 (626)
.+|||++||+|.++..++.. ++ -.|+.+|.+++.++.+.+. |+- .+++ |..+-+.. ...||+|..+- |
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~lDP-~ 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDIDP-F 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEECC-C
Confidence 36999999999999998654 42 3577788887777766543 231 1233 21111111 45799999853 3
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+ +. ..+|...-+.+||||.+.++
T Consensus 135 ---G--s~-~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ---G--SP-APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---C--Cc-HHHHHHHHHHhcCCCEEEEE
Confidence 1 11 34555546778999999997
No 457
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.93 E-value=0.2 Score=45.27 Aligned_cols=39 Identities=28% Similarity=0.520 Sum_probs=27.5
Q ss_pred CeeEEEecccc--ccc--cccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 275 AFDMAHCSRCL--IPW--NQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 275 sFDlV~~~~~l--~h~--~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.||+|.|.-+. +|. .++. ..+|+.+.+.|+|||.|++.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999995543 232 2222 579999999999999999983
No 458
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=88.86 E-value=0.6 Score=49.30 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=70.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccc----eecc-ccccCCCC------CCccceeeec
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVG----TYTN-WCEAMSTY------PRTYDLIHAD 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~----~~~~-~~e~~~~y------p~t~Dlih~~ 539 (626)
++|||+=|-+|||+.+-+.-|. ..|+.+|.|...|+.+.+.--+. .-|. +++..-.| .+.||+|-++
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 5899999999999998877776 25778899988888776653211 1111 12211111 2689998864
Q ss_pred c-ccccCCC--CCCHHHHHHHhhhhccCCcEEEEEcC------hHHHHHHHHHHHhCCCeeEEeecC
Q 006905 540 S-VFSLYKD--RCETEDILLEMDRILRPEGGVIFRDD------VDELVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 540 ~-~f~~~~~--~c~~~~~l~E~dRiLRPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~~~e 597 (626)
= .|..... .=+...++.-.-++|+|||.+++.-. ...++.+++-+..++---+....+
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~~~~~~~~p~ 269 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVEFIERLGQPP 269 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCEEEEEEE---
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccceEeeeecccc
Confidence 2 2321110 01334577778899999999988632 123455555565544444443333
No 459
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=88.65 E-value=0.51 Score=48.78 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=55.9
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHH----HHhcc---cceec-cccccCCC------CCCc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVI----YERGL---VGTYT-NWCEAMST------YPRT 532 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~----~~rgl---i~~~~-~~~e~~~~------yp~t 532 (626)
..-++||.+|+++|--|.+|+.- +- -.-|+.++..+....++ .+-|+ |.+.+ +..+.+.. +..+
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34678999999999766666532 10 01245555554555543 33454 33333 22222222 3469
Q ss_pred cceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 533 YDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 533 ~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
||+|-.+.- +-.....+...-+.|||||.+|+
T Consensus 157 fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 157 FDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred ccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 999988432 22344566666789999999887
No 460
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=88.27 E-value=3.9 Score=44.45 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=64.3
Q ss_pred HHHHHHHhhc---cCCCCCCEEEEeCCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcC-CC-eEEEE
Q 006905 197 YIDDIGKLIN---LNDGSIRTAIDTGCGVASWGAYLLSR--------NIITMSFAPRDTHEAQVQFALERG-VP-ALIGV 263 (626)
Q Consensus 197 yi~~L~~ll~---l~~~~~~~VLDIGCGtG~~a~~La~~--------~V~avdis~~dls~a~i~~A~erg-~~-~~~~v 263 (626)
|......+++ +.-.++.+|||+.+..|+=++.|.+. .+++-|+++.-++ ++.....+- .+ ..+..
T Consensus 138 ~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~--~L~~q~~~l~~~~~~v~~ 215 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLN--MLVHQLKRLPSPNLLVTN 215 (375)
T ss_pred hhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHH--HHHHHHhccCCcceeeec
Confidence 3344455554 33344569999999999877777663 3566677553332 222222321 11 12222
Q ss_pred cccccCC---------CCCCCeeEEEe-ccccc------------c-cc--------ccHHHHHHHHHhcccCCeEEEEE
Q 006905 264 LAAERLP---------YPSRAFDMAHC-SRCLI------------P-WN--------QFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 264 ~d~~~Lp---------f~d~sFDlV~~-~~~l~------------h-~~--------~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.++...| .....||-|.| ..|-. . |. .-+-.+|..-.|+||+||.++.|
T Consensus 216 ~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 216 HDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred ccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2222222 23346999997 11100 0 11 11136889999999999999998
Q ss_pred eC
Q 006905 313 GP 314 (626)
Q Consensus 313 ~p 314 (626)
+-
T Consensus 296 TC 297 (375)
T KOG2198|consen 296 TC 297 (375)
T ss_pred cc
Confidence 64
No 461
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=88.25 E-value=0.86 Score=41.98 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=24.9
Q ss_pred EEEEeCCCCchHHHHHhhC----CcEEEeCCccchH
Q 006905 214 TAIDTGCGVASWGAYLLSR----NIITMSFAPRDTH 245 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~----~V~avdis~~dls 245 (626)
++||+|||.|.++..++.. .+++++..+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 4899999999999888875 3777777764443
No 462
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=88.12 E-value=0.82 Score=45.76 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=52.1
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCc--cchHHHHHHHHHHcC----CC-eEEEEcc-cccCC--CCCCC-ee
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAP--RDTHEAQVQFALERG----VP-ALIGVLA-AERLP--YPSRA-FD 277 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~--~dls~a~i~~A~erg----~~-~~~~v~d-~~~Lp--f~d~s-FD 277 (626)
-.+.|||||.|.+...|+.. -+.+++|-- .|.-.+.++..+... .+ +.....+ ..-+| |..+. +-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 36999999999999999887 456666522 122333444333211 11 1111111 11222 11111 22
Q ss_pred EEEecccccccc-------ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 278 MAHCSRCLIPWN-------QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 278 lV~~~~~l~h~~-------~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.++..-- |+- .-...++.+..-+|++||.++...
T Consensus 142 mff~fpdp-Hfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 142 MFFLFPDP-HFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ceeecCCh-hHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22232221 111 111468899999999999999873
No 463
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=87.66 E-value=2.6 Score=45.73 Aligned_cols=100 Identities=18% Similarity=0.110 Sum_probs=63.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH--c-C----CCeEEEEcccccC-CCCCCCeeEE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE--R-G----VPALIGVLAAERL-PYPSRAFDMA 279 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e--r-g----~~~~~~v~d~~~L-pf~d~sFDlV 279 (626)
-+++|=+|.|.|--++.|.+. .++-+|++|.+++-+..+.... + + ..+.+..-|+..+ .-..+.||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 468999999999999999886 5788888776555333222211 1 1 1233444343332 2335589999
Q ss_pred EeccccccccccH-------HHHHHHHHhcccCCeEEEEEeC
Q 006905 280 HCSRCLIPWNQFG-------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 280 ~~~~~l~h~~~~~-------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.-. +-+..+ ..+..-+.|.|+++|.+++...
T Consensus 370 IVDl---~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 370 IVDL---PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEeC---CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 8733 111111 3677888999999999999753
No 464
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.32 E-value=0.16 Score=48.68 Aligned_cols=41 Identities=29% Similarity=0.363 Sum_probs=35.5
Q ss_pred CCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 530 PRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 530 p~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
|+|.|+|-|.++..|+.-+ .-...+.|-.|+|||||++-|.
T Consensus 45 dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred CcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEE
Confidence 6999999999999987653 3357899999999999999986
No 465
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=87.13 E-value=2.1 Score=43.30 Aligned_cols=108 Identities=15% Similarity=0.262 Sum_probs=72.8
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCC-----C-Cccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTY-----P-RTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~y-----p-~t~Dlih~~~~f~~ 544 (626)
-.+||+||=....+.. ..+ | .+|+++|.. .+-+-|.+ .+|... + ..||+|.++.|+.+
T Consensus 53 lrlLEVGals~~N~~s--~~~-~-fdvt~IDLn-s~~~~I~q-----------qDFm~rplp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG-W-FDVTRIDLN-SQHPGILQ-----------QDFMERPLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred ceEEeecccCCCCccc--ccC-c-eeeEEeecC-CCCCCcee-----------eccccCCCCCCcccceeEEEEEEEEee
Confidence 4699999874433222 222 2 369999987 33232222 233333 2 79999999999998
Q ss_pred CCCCCCHHHHHHHhhhhccCCcE-----EEEEcCh-------H-HHHHHHHHHHhCCCeeEEe
Q 006905 545 YKDRCETEDILLEMDRILRPEGG-----VIFRDDV-------D-ELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~-----~i~~d~~-------~-~~~~~~~~~~~l~w~~~~~ 594 (626)
..+--..-..|.-..+.|||+|. ++|--+. . ..+.++.|+.+|.....-.
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 87644556789999999999999 5553221 1 2568889999999986643
No 466
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=87.13 E-value=2.1 Score=45.93 Aligned_cols=98 Identities=8% Similarity=0.063 Sum_probs=60.5
Q ss_pred eEEeccCchhhHhhhhhC----CCeEEEEeccCccCcccHHHHHHhcccc-----eeccccccCCC---------CCCcc
Q 006905 472 NILDMNAHLGGFAAALID----FPVWVMNVVPAEAKINTLGVIYERGLVG-----TYTNWCEAMST---------YPRTY 533 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~----~~v~~mnv~~~~~~~~~l~~~~~rgli~-----~~~~~~e~~~~---------yp~t~ 533 (626)
.++|+|||.|.=.+.|++ .+. ....+|+|.|.+.|+.+.++-.-. .++..|..|.. .+...
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 699999999987665543 211 127899999999998877654311 11122333311 11122
Q ss_pred ce-eeeccccccCCCCCCHHHHHHHhhh-hccCCcEEEEE
Q 006905 534 DL-IHADSVFSLYKDRCETEDILLEMDR-ILRPEGGVIFR 571 (626)
Q Consensus 534 Dl-ih~~~~f~~~~~~c~~~~~l~E~dR-iLRPgG~~i~~ 571 (626)
.+ ++-...|.+.... ....+|.+|.+ .|+|||.++|.
T Consensus 158 r~~~flGSsiGNf~~~-ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 158 TTILWLGSSIGNFSRP-EAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cEEEEeCccccCCCHH-HHHHHHHHHHHhhCCCCCEEEEe
Confidence 32 3333455554432 33579999999 99999999995
No 467
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=86.93 E-value=0.74 Score=46.08 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=55.0
Q ss_pred hchhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhC--CCeEEEEeccCccCcccHHH---HHHh-cc
Q 006905 442 IFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALID--FPVWVMNVVPAEAKINTLGV---IYER-GL 515 (626)
Q Consensus 442 ~f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~--~~v~~mnv~~~~~~~~~l~~---~~~r-gl 515 (626)
.|.......+.++.. .+.+ -.+|+||-||.|.|+-.+++ ++. .|.+.|..+...+. +.++ ++
T Consensus 83 yfs~rl~~Er~Ri~~------~v~~---~e~VlD~faGIG~f~l~~ak~~~~~---~V~A~d~Np~a~~~L~~Ni~lNkv 150 (200)
T PF02475_consen 83 YFSPRLSTERRRIAN------LVKP---GEVVLDMFAGIGPFSLPIAKHGKAK---RVYAVDLNPDAVEYLKENIRLNKV 150 (200)
T ss_dssp ---GGGHHHHHHHHT------C--T---T-EEEETT-TTTTTHHHHHHHT-SS---EEEEEES-HHHHHHHHHHHHHTT-
T ss_pred EEccccHHHHHHHHh------cCCc---ceEEEEccCCccHHHHHHhhhcCcc---EEEEecCCHHHHHHHHHHHHHcCC
Confidence 344444455555532 2334 46899999999999999987 554 46666665444432 2222 22
Q ss_pred ---cceeccccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEE
Q 006905 516 ---VGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVI 569 (626)
Q Consensus 516 ---i~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i 569 (626)
|-.++.=|..|.. ...||-|.+ .+...+ ...|.+..+++|+||.+=
T Consensus 151 ~~~i~~~~~D~~~~~~-~~~~drvim-----~lp~~~--~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 151 ENRIEVINGDAREFLP-EGKFDRVIM-----NLPESS--LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TTTEEEEES-GGG----TT-EEEEEE-------TSSG--GGGHHHHHHHEEEEEEEE
T ss_pred CCeEEEEcCCHHHhcC-ccccCEEEE-----CChHHH--HHHHHHHHHHhcCCcEEE
Confidence 2233321222322 478886655 222211 357888899999999863
No 468
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=86.75 E-value=0.48 Score=45.72 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=34.0
Q ss_pred CCCeeEEEeccccccccc-------cH---HHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQ-------FG---GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~-------~~---~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.++||.+.|..+++|..- ++ ...+.++.++|||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 468999999888877531 11 4789999999999999999876
No 469
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=86.69 E-value=0.37 Score=48.27 Aligned_cols=89 Identities=24% Similarity=0.359 Sum_probs=62.5
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec--cccccCCCCCCc---cceeeecccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT--NWCEAMSTYPRT---YDLIHADSVF 542 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~--~~~e~~~~yp~t---~Dlih~~~~f 542 (626)
..--++||+|||-|-..-.|+..= -.|-+++.|..|....-..+. .++. +|- +| ||+|-|-.++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk~y-nVl~~~ew~-------~t~~k~dli~clNlL 179 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKKNY-NVLTEIEWL-------QTDVKLDLILCLNLL 179 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhcCC-ceeeehhhh-------hcCceeehHHHHHHH
Confidence 445789999999999888876541 125566677666666666665 2221 222 44 9999994444
Q ss_pred ccCCCCCCHH-HHHHHhhhhccC-CcEEEEE
Q 006905 543 SLYKDRCETE-DILLEMDRILRP-EGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~-~~l~E~dRiLRP-gG~~i~~ 571 (626)
+||.-+ .+|.++.-||+| .|.+|+.
T Consensus 180 ----DRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 180 ----DRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ----HhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 577655 588899999999 9999986
No 470
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=86.65 E-value=4 Score=38.61 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=45.3
Q ss_pred cEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC-C-CCCCeeEEEeccccccccccH--------HHHHHHHHh
Q 006905 234 IITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP-Y-PSRAFDMAHCSRCLIPWNQFG--------GIYLIEVDR 301 (626)
Q Consensus 234 V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp-f-~d~sFDlV~~~~~l~h~~~~~--------~~~L~Ei~R 301 (626)
|.+.|+-...+......+. +.+. .+.+...+=+.+. + +.+.+|+|+.|....+-.+.. -.++..+.+
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~-~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLE-EAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEES-HHHHHHHHHHHH-HTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHH-hcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 5677876544443333333 2333 2444443323333 2 235899999988765543321 378999999
Q ss_pred cccCCeEEEEEeCC
Q 006905 302 VLRPGGYWILSGPP 315 (626)
Q Consensus 302 vLKPGG~lvis~pp 315 (626)
+|+|||.+.+...+
T Consensus 81 lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 81 LLKPGGIITIVVYP 94 (140)
T ss_dssp HEEEEEEEEEEE--
T ss_pred hhccCCEEEEEEeC
Confidence 99999999998753
No 471
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=86.21 E-value=1.7 Score=46.48 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=68.2
Q ss_pred HHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcc---cceeccccccCCCCC
Q 006905 458 KTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGL---VGTYTNWCEAMSTYP 530 (626)
Q Consensus 458 ~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgl---i~~~~~~~e~~~~yp 530 (626)
..++.+-.. -.-|.|||+|||.|-+...-+.-|. -.|-+++++ +|-+.+.. ..| |.+.-+=-|.. ..|
T Consensus 167 ~Ail~N~sD-F~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-eLP 241 (517)
T KOG1500|consen 167 RAILENHSD-FQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI-ELP 241 (517)
T ss_pred HHHHhcccc-cCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc-cCc
Confidence 344554444 5578899999999976544443333 135566777 77664422 111 22222111221 257
Q ss_pred CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-------hHHHHHHHHHHHhCCCeeE
Q 006905 531 RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-------VDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-------~~~~~~~~~~~~~l~w~~~ 592 (626)
.-.|+|-+--+=..+-+.-.++..| -..|.|+|.|...=+-. .+..--++..-+.+-|--.
T Consensus 242 Ek~DviISEPMG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq 309 (517)
T KOG1500|consen 242 EKVDVIISEPMGYMLVNERMLESYL-HARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQ 309 (517)
T ss_pred hhccEEEeccchhhhhhHHHHHHHH-HHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhh
Confidence 8889887632211222211223222 34599999998865421 1333455666677777543
No 472
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.05 E-value=0.57 Score=45.28 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=73.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCc---ccHHHHHHhcc----cceec---cccccCCCC-CCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKI---NTLGVIYERGL----VGTYT---NWCEAMSTY-PRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~---~~l~~~~~rgl----i~~~~---~~~e~~~~y-p~t~Dlih~ 538 (626)
-|.||.+|+|+-|.|.-|+...+-+-.|--+|+.+ ..++-+..+.. -..-| .|-.+.+.- -.|||+|.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 46799999999999999876544333444445432 23444444442 11101 222333333 379999998
Q ss_pred ccccccCCCCCCH-----HHHHHHhhhhccCCcEEEEEcCh--HHHHHHHHHHHhCCCeeEE
Q 006905 539 DSVFSLYKDRCET-----EDILLEMDRILRPEGGVIFRDDV--DELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 539 ~~~f~~~~~~c~~-----~~~l~E~dRiLRPgG~~i~~d~~--~~~~~~~~~~~~l~w~~~~ 593 (626)
+.|.. +.++.-+.+.|||.|..++..+. +.+++..+.+...-..+.+
T Consensus 110 --------ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 110 --------ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred --------ccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence 45543 46888899999999999987654 5677777766665554443
No 473
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.73 E-value=0.79 Score=49.30 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=55.4
Q ss_pred EEeccCchhhHhhhhhCCCeEE--EEeccCccCcccHHHH--HHhcccceeccc-----cccCCCCC--Cccceeeeccc
Q 006905 473 ILDMNAHLGGFAAALIDFPVWV--MNVVPAEAKINTLGVI--YERGLVGTYTNW-----CEAMSTYP--RTYDLIHADSV 541 (626)
Q Consensus 473 vlD~g~g~G~faa~l~~~~v~~--mnv~~~~~~~~~l~~~--~~rgli~~~~~~-----~e~~~~yp--~t~Dlih~~~~ 541 (626)
+||+|+|.|..+-| ..++|- -+++-++.++....++ .++..+....+| -+..+.+| ..|+|+-+..-
T Consensus 117 iLDvG~GPgtgl~A--~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~e 194 (484)
T COG5459 117 ILDVGAGPGTGLWA--LNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDE 194 (484)
T ss_pred hhccCCCCchhhhh--hcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhhh
Confidence 99999999976444 444451 1233333442222222 234444444455 34455566 88887665433
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+-+-+..=.+...+...=-+|+|||.++|-+.
T Consensus 195 Ll~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 195 LLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 33333322344455556678999999999764
No 474
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=85.65 E-value=2.2 Score=42.34 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=52.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEc-cccc--------CCCCCCCee
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVL-AAER--------LPYPSRAFD 277 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~-d~~~--------Lpf~d~sFD 277 (626)
+.+|||+||..|+|+.-..++ -|.++|+-.. ..-.|.. +..+ |..+ ...|+...|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~p~~Ga~--~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------EPPEGAT--IIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------cCCCCcc--cccccccCCHHHHHHHHHhCCCCccc
Confidence 569999999999999888776 3667776321 1122321 1111 1110 013567899
Q ss_pred EEEeccccccc----cccH------HHHHHHHHhcccCCeEEEEE
Q 006905 278 MAHCSRCLIPW----NQFG------GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 278 lV~~~~~l~h~----~~~~------~~~L~Ei~RvLKPGG~lvis 312 (626)
+|++-..-..- .+.. ..+|.-....++|+|.|+.-
T Consensus 139 vVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 139 VVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred EEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 99985432111 0100 23444555678899999986
No 475
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=85.61 E-value=4.5 Score=40.65 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=66.8
Q ss_pred EEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcc-cccCCCCCCCeeEEEecccccc
Q 006905 215 AIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLA-AERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 215 VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d-~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
|.||||--|.++.+|.++ .++++|+.+.-+..+....+ ..+. .+.+..+| ...++ +.+..|.|+.+..=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~-~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMG-- 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA-KYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMG-- 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH-HTT-TTTEEEEE-SGGGG---GGG---EEEEEEE---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCcccEEEEECCcccccC-CCCCCCEEEEecCC--
Confidence 689999999999999997 58899998866655554444 3443 35556666 34443 22237888765532
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhcc
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKE 353 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~ 353 (626)
. .--...|.+....++..-.|++.-. . ....++..+...+|..+.+
T Consensus 77 G-~lI~~ILe~~~~~~~~~~~lILqP~-~------------------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 77 G-ELIIEILEAGPEKLSSAKRLILQPN-T------------------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp H-HHHHHHHHHTGGGGTT--EEEEEES-S-------------------HHHHHHHHHHTTEEEEEE
T ss_pred H-HHHHHHHHhhHHHhccCCeEEEeCC-C------------------ChHHHHHHHHHCCCEEEEe
Confidence 1 1114667777777777677887621 0 1234666777778866644
No 476
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=85.43 E-value=5.9 Score=41.68 Aligned_cols=100 Identities=10% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHH---HcCCCeEEEEcccccCCCCCCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLLSR------NIITMSFAPRDTHEAQVQFAL---ERGVPALIGVLAAERLPYPSRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~------~V~avdis~~dls~a~i~~A~---erg~~~~~~v~d~~~Lpf~d~sFDlV~~~ 282 (626)
.++|+=||+|.=-++..+... .++.+|+++.....+ .+... ..+....+..+|....+..-..||+|+.+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a-~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELA-RRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHH-HHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHH-HHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 469999999987666655442 366778866333222 12222 12344677777766666555689999976
Q ss_pred cccccccc-cHHHHHHHHHhcccCCeEEEEEe
Q 006905 283 RCLIPWNQ-FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 283 ~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
... .... +-..+|..+.+.++||..+++..
T Consensus 200 alV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALV-GMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhc-ccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 644 3222 33789999999999999999974
No 477
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.15 E-value=0.99 Score=45.96 Aligned_cols=91 Identities=16% Similarity=0.288 Sum_probs=57.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC-------------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--------
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-------------NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP-------- 270 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-------------~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp-------- 270 (626)
..+++|+.+..|+|...|.++ .++++|+-+... -.| +...++|.....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP---------I~G--V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP---------IEG--VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc---------cCc--eEEeecccCCHhHHHHHHHH
Confidence 458999999999999888764 277888755211 112 233344432221
Q ss_pred CCCCCeeEEEecccc-----ccccccH-----HHHHHHHHhcccCCeEEEEEe
Q 006905 271 YPSRAFDMAHCSRCL-----IPWNQFG-----GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 271 f~d~sFDlV~~~~~l-----~h~~~~~-----~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|.....|+|+|-.+- |.+.+.. ..+|.-..++|||||.|+--.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 445689999995542 2221111 245666789999999998753
No 478
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.01 E-value=0.71 Score=46.35 Aligned_cols=132 Identities=22% Similarity=0.304 Sum_probs=70.6
Q ss_pred ceeEEeccCchhhHhhhhhCC---C--eEEEEeccCccCcccHHHHHHhcccc---eeccccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDF---P--VWVMNVVPAEAKINTLGVIYERGLVG---TYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~--v~~mnv~~~~~~~~~l~~~~~rgli~---~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
.-.|+|+||-.||+.-.++++ . |...-+.|++..++ +.+=+|-|. +....-|. .+ ..+|+|-++.
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~---V~~iq~d~~~~~~~~~l~~~---l~~~~~DvV~sD~ 119 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPG---VIFLQGDITDEDTLEKLLEA---LGGAPVDVVLSDM 119 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCC---ceEEeeeccCccHHHHHHHH---cCCCCcceEEecC
Confidence 446999999999998877654 2 56666777766533 222122111 11111111 23 3368777655
Q ss_pred ccccCCCC-------CCHHHHHHHh-hhhccCCcEEEEE-----cChHHHHHHHHHHHhCCCeeEEeecCC-CCCCcceE
Q 006905 541 VFSLYKDR-------CETEDILLEM-DRILRPEGGVIFR-----DDVDELVKVKRIIDALKWQSQIVDHED-GPLEREKL 606 (626)
Q Consensus 541 ~f~~~~~~-------c~~~~~l~E~-dRiLRPgG~~i~~-----d~~~~~~~~~~~~~~l~w~~~~~~~e~-~~~~~e~~ 606 (626)
.=.....+ -.+..+.+|| .++|+|||.|++- +..+.+..+++.++.+. ++-... -+..+|-.
T Consensus 120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~----~~KP~aSR~~S~E~y 195 (205)
T COG0293 120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVK----IFKPKASRKRSREIY 195 (205)
T ss_pred CCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeE----EecCccccCCCceEE
Confidence 43211111 1122355666 5799999999995 34456666666655443 322111 11235777
Q ss_pred EEEEe
Q 006905 607 LFAVK 611 (626)
Q Consensus 607 l~~~K 611 (626)
++|.+
T Consensus 196 ~v~~~ 200 (205)
T COG0293 196 LVAKG 200 (205)
T ss_pred EEEec
Confidence 77754
No 479
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=84.96 E-value=0.34 Score=43.81 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=34.8
Q ss_pred cceeeeccccc--cCCC-CCCHHHHHHHhhhhccCCcEEEEEcC--------hHHHHHHHHHHHhCCCeeE
Q 006905 533 YDLIHADSVFS--LYKD-RCETEDILLEMDRILRPEGGVIFRDD--------VDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 533 ~Dlih~~~~f~--~~~~-~c~~~~~l~E~dRiLRPgG~~i~~d~--------~~~~~~~~~~~~~l~w~~~ 592 (626)
||+|-|-.|-- |+.+ ...+..++..|.+.|||||.+|+--+ ......+.+-.++|.+.-.
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~ 72 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPD 72 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GG
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChH
Confidence 88888822211 2221 24566789999999999999999532 2234566666777776543
No 480
>PRK13699 putative methylase; Provisional
Probab=84.83 E-value=2.2 Score=43.48 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=49.0
Q ss_pred ccCCCCC-Cccceeeeccccc----cCCCC--------CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCe
Q 006905 524 EAMSTYP-RTYDLIHADSVFS----LYKDR--------CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQ 590 (626)
Q Consensus 524 e~~~~yp-~t~Dlih~~~~f~----~~~~~--------c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~ 590 (626)
|-+..+| ++.|||-++==+. ....+ .-++.++.|+.|||||||.+++--....+..+...++...|.
T Consensus 11 e~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~ 90 (227)
T PRK13699 11 DVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFS 90 (227)
T ss_pred HHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCE
Confidence 4455677 8888877762211 00010 113468999999999999998642222233444455555554
Q ss_pred eE---EeecCCC------CCCcceEEEEEec
Q 006905 591 SQ---IVDHEDG------PLEREKLLFAVKL 612 (626)
Q Consensus 591 ~~---~~~~e~~------~~~~e~~l~~~K~ 612 (626)
.. +-+..+. ....|.++++.|.
T Consensus 91 l~~~IiW~K~~~~~~~~~~~~~E~i~~~~k~ 121 (227)
T PRK13699 91 VVGHLVFTKNYTSKAAYVGYRHECAYILAKG 121 (227)
T ss_pred EeeEEEEECCCCCCCCCCccceeEEEEEECC
Confidence 33 2222211 1234788888875
No 481
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.68 E-value=8.7 Score=38.70 Aligned_cols=135 Identities=17% Similarity=0.288 Sum_probs=89.4
Q ss_pred ceeEEeccCchhhHhhhhhCC---C-eEEEEeccCccCcccHHHHHHhc-ccceeccccccCCCCCCcccee--eecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF---P-VWVMNVVPAEAKINTLGVIYERG-LVGTYTNWCEAMSTYPRTYDLI--HADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~-v~~mnv~~~~~~~~~l~~~~~rg-li~~~~~~~e~~~~yp~t~Dli--h~~~~f 542 (626)
-..||=+||-.|+-..+..+- | ++.+-++|.-.. ..|.++-+|- ++.++-| ..+|.+|-.+ |.+.+|
T Consensus 77 g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~Ni~PIL~D-----A~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 77 GSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRPNIIPILED-----ARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCCCceeeecc-----cCCcHHhhhhcccccEEE
Confidence 446999999999999888653 5 688889988886 8888888875 5777776 5677655432 334445
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE----------cChHHHHHHHHHHHhCCCeeE-EeecCCCCCCcceEEEEEe
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR----------DDVDELVKVKRIIDALKWQSQ-IVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~----------d~~~~~~~~~~~~~~l~w~~~-~~~~e~~~~~~e~~l~~~K 611 (626)
.....+-..+-+..-++.-|++||++++. |+.++..+-.+.+..=..++. ..+.| |..++-++|..|
T Consensus 151 ~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~Le--Pye~DH~~i~~~ 228 (231)
T COG1889 151 QDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLE--PYEKDHALIVAK 228 (231)
T ss_pred EecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccC--CcccceEEEEEe
Confidence 55445444455778889999999999885 444554433333333334443 33444 666777777665
Q ss_pred c
Q 006905 612 L 612 (626)
Q Consensus 612 ~ 612 (626)
.
T Consensus 229 ~ 229 (231)
T COG1889 229 Y 229 (231)
T ss_pred e
Confidence 3
No 482
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=84.29 E-value=15 Score=36.52 Aligned_cols=144 Identities=13% Similarity=0.172 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcc----cHHHHHHhcc-c
Q 006905 445 QNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKIN----TLGVIYERGL-V 516 (626)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~----~l~~~~~rgl-i 516 (626)
||+..=-.-++.=.+. |.. -....+|++|||+|-..+.|++. ++. .+.+|..+. |++.+.-.+. |
T Consensus 23 EDTFlLlDaLekd~~e---L~~-~~~~i~lEIG~GSGvvstfL~~~i~~~~~---~latDiNp~A~~~Tl~TA~~n~~~~ 95 (209)
T KOG3191|consen 23 EDTFLLLDALEKDAAE---LKG-HNPEICLEIGCGSGVVSTFLASVIGPQAL---YLATDINPEALEATLETARCNRVHI 95 (209)
T ss_pred chhhHHHHHHHHHHHH---Hhh-cCceeEEEecCCcchHHHHHHHhcCCCce---EEEecCCHHHHHHHHHHHHhcCCcc
Confidence 4555544444432222 222 23567999999999999999875 332 334454433 3333433332 2
Q ss_pred ceec-cccccCCCCCCccceeeecccc--------------ccCC----CCCCHHHHHHHhhhhccCCcEEEEEcC-hHH
Q 006905 517 GTYT-NWCEAMSTYPRTYDLIHADSVF--------------SLYK----DRCETEDILLEMDRILRPEGGVIFRDD-VDE 576 (626)
Q Consensus 517 ~~~~-~~~e~~~~yp~t~Dlih~~~~f--------------~~~~----~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~ 576 (626)
.++. |.-..+. +++.|++.-+-=+ +.|. .|--+..+|--++-||-|-|.+++--- ...
T Consensus 96 ~~V~tdl~~~l~--~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 96 DVVRTDLLSGLR--NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred ceeehhHHhhhc--cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 2221 2222222 2666654322211 1111 111234577778888899999998432 223
Q ss_pred HHHHHHHHHhCCCeeEEeecC
Q 006905 577 LVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 577 ~~~~~~~~~~l~w~~~~~~~e 597 (626)
..+|-++++.-.|..++....
T Consensus 174 p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 174 PKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred HHHHHHHHhhcccceeEEEEE
Confidence 445555777888888765433
No 483
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=83.72 E-value=1.7 Score=39.33 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=25.4
Q ss_pred CCEEEEeCCCCchHHHHHhhCCcEEEeCCc
Q 006905 212 IRTAIDTGCGVASWGAYLLSRNIITMSFAP 241 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~V~avdis~ 241 (626)
.....|||||+|-+..-|.+.+..+.+++.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 457999999999999999998888877733
No 484
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=82.74 E-value=0.78 Score=44.48 Aligned_cols=112 Identities=17% Similarity=0.263 Sum_probs=57.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------cceec-cccccCCCCC--Cccceeeec-
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------VGTYT-NWCEAMSTYP--RTYDLIHAD- 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------i~~~~-~~~e~~~~yp--~t~Dlih~~- 539 (626)
++|+|+-||.||-+-.++...- .|+.+|..+..+..+....- |-.++ ||-+-..... ..||.|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 4799999999999999999853 68888888778876655432 22333 4444444443 238998864
Q ss_pred ----------cccccCC--CCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCC
Q 006905 540 ----------SVFSLYK--DRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALK 588 (626)
Q Consensus 540 ----------~~f~~~~--~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~ 588 (626)
.+|.... ...++.+++..+-++-+ -+++- -...-+..|.+++..+.
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~---nv~l~LPRn~dl~ql~~~~~~l~ 136 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITP---NVVLFLPRNSDLNQLSQLTRELF 136 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S----EEEEEETTB-HHHHHHT----T
T ss_pred CCCCccccccCccCHHHccCCCCHHHHHHHHHhhCC---CEEEEeCCCCCHHHHHHHhcccc
Confidence 2454422 22356677777666642 23332 22223455555544443
No 485
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=81.46 E-value=1.7 Score=42.53 Aligned_cols=120 Identities=13% Similarity=0.214 Sum_probs=67.1
Q ss_pred CCceeEEeccCchhhHh--hhhhCCCeE------EEEeccCccCcccHHHHHHhc----c---cceeccc-cccCCCCCC
Q 006905 468 GRYRNILDMNAHLGGFA--AALIDFPVW------VMNVVPAEAKINTLGVIYERG----L---VGTYTNW-CEAMSTYPR 531 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~fa--a~l~~~~v~------~mnv~~~~~~~~~l~~~~~rg----l---i~~~~~~-~e~~~~yp~ 531 (626)
..-..|||==||+|++. |++...++. ...+.+.|..++++..+.+.- + |.... | ...+...+.
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~-~D~~~l~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ-WDARELPLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE---GGGGGGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe-cchhhcccccC
Confidence 33457999999999997 344333331 123668888888887655432 2 12221 1 122222238
Q ss_pred ccceeeeccccccCCC-C----CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE
Q 006905 532 TYDLIHADSVFSLYKD-R----CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~-~----c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
++|.|-++-=|..-.. . -....++.|+.|+|+|...++++...+. .+.+....|+..
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~ 167 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKR 167 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEE
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceE
Confidence 9999999766653211 0 1123478999999999666667766643 444444466654
No 486
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=81.37 E-value=2.9 Score=40.84 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=70.7
Q ss_pred hhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccce-----ec-cccccCCCCC-Cc
Q 006905 460 MNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGT-----YT-NWCEAMSTYP-RT 532 (626)
Q Consensus 460 ~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~-----~~-~~~e~~~~yp-~t 532 (626)
++..+.+ .+--+||.+|.|+|-|..+++++++---++..++.+++......++ ..++ -. +.-......+ .-
T Consensus 40 M~s~I~p-esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-~p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 40 MASVIDP-ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-YPGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred HHhccCc-ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-CCCccccccchhhHHHHHhhcCCCe
Confidence 3445667 7778999999999999999999988766788888776665543332 1111 11 1111223345 77
Q ss_pred cceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 533 YDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 533 ~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
||.|-|..=|-...-+ ---.+|.+.---|++||-++-
T Consensus 118 ~D~viS~lPll~~P~~-~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 118 FDSVISGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred eeeEEeccccccCcHH-HHHHHHHHHHHhcCCCCeEEE
Confidence 8888774444333211 124688888888999998875
No 487
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=81.34 E-value=16 Score=38.02 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=61.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEccc----ccCCCCCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--------NIITMSFAPRDTHEAQVQFALER-GVPALIGVLAA----ERLPYPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--------~V~avdis~~dls~a~i~~A~er-g~~~~~~v~d~----~~Lpf~d~sFDl 278 (626)
.-+.+|+|.|+..=++.|.+. .++.+|++..-+.....+...+. ++++.-..++. ..+| ...=-+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 448999999999777776653 57788887755555554444443 44444333331 2233 222222
Q ss_pred -EEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 279 -AHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 279 -V~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++..-++-.+.+++ ..+|..+..+|+||-+|++-..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 22333343444433 6899999999999999999643
No 488
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=81.19 E-value=2 Score=45.33 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=61.4
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH-----cCCCeEEEEccccc-C-CCCCCCeeE
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE-----RGVPALIGVLAAER-L-PYPSRAFDM 278 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e-----rg~~~~~~v~d~~~-L-pf~d~sFDl 278 (626)
...+++|=||-|.|.+......+ ++.-++++. ++.+...++... .+..+.+..+|... + ....++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~-~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDE-NVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhH-HHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 34678999999999888776665 455555533 222222222211 12345555556222 1 234789999
Q ss_pred EEeccc--cccccc-cHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRC--LIPWNQ-FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~--l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+.--. ..+-.. ....++..+.+.||+||++++.+
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 996322 111100 11467888999999999999975
No 489
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=80.42 E-value=6.3 Score=44.76 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=61.7
Q ss_pred CCEEEEeCCCCchHHHHHhh------C--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLS------R--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~------~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~ 283 (626)
...|+=+|+|.|-+.....+ + .+.+++-.|..+.--+-..-+.-.-.+++...|...++-|....|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 44678899999966544332 3 566666666433211111111112346677778888885568899999744
Q ss_pred ccccccccH--HHHHHHHHhcccCCeEEEEE
Q 006905 284 CLIPWNQFG--GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 284 ~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis 312 (626)
|--+.++. ...|.-+-+.|||.|..|=+
T Consensus 448 -LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 -LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred -hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 32333333 68999999999999876543
No 490
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=80.23 E-value=1.2 Score=43.89 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=58.3
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----ccc---ceec-cccccCCCC--C-Cccceeeec
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLV---GTYT-NWCEAMSTY--P-RTYDLIHAD 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli---~~~~-~~~e~~~~y--p-~t~Dlih~~ 539 (626)
.+|||++||+|++|..+++++.- .|+.+|.+...++.+.+. |+- .++. |--+.+..+ . ..||+|-.+
T Consensus 51 ~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 46999999999999999999762 577888877677655432 221 1221 111111112 1 237887775
Q ss_pred cccccCCCCCCHHHHHHHh--hhhccCCcEEEEEcCh
Q 006905 540 SVFSLYKDRCETEDILLEM--DRILRPEGGVIFRDDV 574 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~--dRiLRPgG~~i~~d~~ 574 (626)
==|.. -..+.+|.-+ ..+|+++|.+|+....
T Consensus 129 PPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 55542 1234443322 4589999988886443
No 491
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=80.06 E-value=2.7 Score=44.37 Aligned_cols=145 Identities=15% Similarity=0.181 Sum_probs=75.1
Q ss_pred CCceeEEeccCchhhHhhhhhCC------CeEEEEeccCccCcccHHHHHHhccc---cee--c-cccccCCCCC----C
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF------PVWVMNVVPAEAKINTLGVIYERGLV---GTY--T-NWCEAMSTYP----R 531 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~------~v~~mnv~~~~~~~~~l~~~~~rgli---~~~--~-~~~e~~~~yp----~ 531 (626)
..-.+|+|-.||.|+|-.+..++ ...-.++.+.|..+.+..++.-+-++ +.- + .+...|.... .
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 44567999999999997777652 01123788888887777766543221 111 1 1233344322 5
Q ss_pred ccceeeeccccccC--CC-----CC----------CHH-HHHHHhhhhccCCcEEEEEcChH------HHHHHHH-HHHh
Q 006905 532 TYDLIHADSVFSLY--KD-----RC----------ETE-DILLEMDRILRPEGGVIFRDDVD------ELVKVKR-IIDA 586 (626)
Q Consensus 532 t~Dlih~~~~f~~~--~~-----~c----------~~~-~~l~E~dRiLRPgG~~i~~d~~~------~~~~~~~-~~~~ 586 (626)
.||+|-++-=|... .. .. ..+ ..+.-+-+.|++||.+++--+.. .-.++++ |++.
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~ 204 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLEN 204 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhh
Confidence 89999988777744 11 00 112 25566889999999865532222 2345655 4554
Q ss_pred CCCeeEEeecC---CCCCCcceEEEEEec
Q 006905 587 LKWQSQIVDHE---DGPLEREKLLFAVKL 612 (626)
Q Consensus 587 l~w~~~~~~~e---~~~~~~e~~l~~~K~ 612 (626)
-.-+..+.-.. .+...+--|||.+|.
T Consensus 205 ~~i~aVI~Lp~~~F~~t~v~t~ilil~k~ 233 (311)
T PF02384_consen 205 GYIEAVISLPSNLFKPTGVPTSILILNKK 233 (311)
T ss_dssp EEEEEEEE--TTSSSSSSS-EEEEEEEES
T ss_pred chhhEEeecccceecccCcCceEEEEeec
Confidence 44443332111 112345667887774
No 492
>PRK10742 putative methyltransferase; Provisional
Probab=79.54 E-value=8.7 Score=39.80 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=50.0
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHc-------CC----CeEEEEccc
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRN--IITMSFAPRDTHEAQVQFALER-------GV----PALIGVLAA 266 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~~--V~avdis~~dls~a~i~~A~er-------g~----~~~~~v~d~ 266 (626)
.|.+.+.+..+...+|||+=+|.|..+..++.++ |+.++-++. ..+.++...++ +. .+.+...|.
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~--vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPV--VAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 4566666555544489999999999999999984 566666553 22233333232 11 133344442
Q ss_pred c-cCCCCCCCeeEEEecccc
Q 006905 267 E-RLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 267 ~-~Lpf~d~sFDlV~~~~~l 285 (626)
. -|.-...+||+|+.-..+
T Consensus 155 ~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred HHHHhhCCCCCcEEEECCCC
Confidence 2 222223479999987765
No 493
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=78.62 E-value=13 Score=38.46 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHc-------CCCeEEEEcc---cccCCCCCCC-eeEE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFALER-------GVPALIGVLA---AERLPYPSRA-FDMA 279 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~er-------g~~~~~~v~d---~~~Lpf~d~s-FDlV 279 (626)
..+||++|.|+|-.+..++.. +..++..+..+.-.........+ |..+....++ .....+.... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 280 HCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 280 ~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++.|+ .-....+.++.-+...|-.+|.+++..+
T Consensus 167 lasDvv-y~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 167 LASDVV-YEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEeeee-ecCCcchhHHHHHHHHHhcCCeEEEEEe
No 494
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=78.42 E-value=0.58 Score=41.07 Aligned_cols=93 Identities=19% Similarity=0.137 Sum_probs=32.4
Q ss_pred EeccCchhhHhhhhhCC----CeEEEEeccCccCc---ccHHHHHHhcccceeccccc----cCCCCC-Cccceeeeccc
Q 006905 474 LDMNAHLGGFAAALIDF----PVWVMNVVPAEAKI---NTLGVIYERGLVGTYTNWCE----AMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 474 lD~g~g~G~faa~l~~~----~v~~mnv~~~~~~~---~~l~~~~~rgli~~~~~~~e----~~~~yp-~t~Dlih~~~~ 541 (626)
|.+|+..|..+..|++. +. ..+..+|..+ ...+++.+.++-..++-.+. .++.++ +.||+|+.++-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~--~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGR--GKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp ----------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred Ccccccccccccccccccccccc--CCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 46788888888777653 21 1244445443 34445544565332222222 233455 89999998542
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
=+ ......-+..+-+.|+|||.+++=|
T Consensus 79 H~----~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS----YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11 1123345666778899999998755
No 495
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=78.31 E-value=2.1 Score=45.05 Aligned_cols=113 Identities=18% Similarity=0.314 Sum_probs=66.5
Q ss_pred ceeEEeccCchhhHhhhhhCC----CeEEEEeccCccCcccHHHHHHh----cc--ccee-ccccccCCCCC-Cccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDF----PVWVMNVVPAEAKINTLGVIYER----GL--VGTY-TNWCEAMSTYP-RTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~----~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~-~~~~e~~~~yp-~t~Dlih 537 (626)
-..||||.|+.||-+.+|++. + .|+..|.+.+-+..+.++ |+ +.+. +|-......++ ..||.|-
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g----~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKG----EIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTS----EEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred cccccccccCCCCceeeeeecccchh----HHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 345999999999998887653 3 367777776666655443 22 2222 22111112233 4599876
Q ss_pred ----eccccccCCCCCCHH----------------HHHHHhhhhc----cCCcEEEEE----cChHHHHHHHHHHHhC
Q 006905 538 ----ADSVFSLYKDRCETE----------------DILLEMDRIL----RPEGGVIFR----DDVDELVKVKRIIDAL 587 (626)
Q Consensus 538 ----~~~~f~~~~~~c~~~----------------~~l~E~dRiL----RPgG~~i~~----d~~~~~~~~~~~~~~l 587 (626)
|++.-....+ =++. .+|...-+.| ||||++|.+ ...+.-.-|+.++++-
T Consensus 162 vDaPCSg~G~i~r~-p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 162 VDAPCSGLGTIRRN-PDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp EECSCCCGGGTTTC-TTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred cCCCccchhhhhhc-cchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 4444322111 1121 3888899999 999999998 2333344555666554
No 496
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=77.44 E-value=4.4 Score=41.12 Aligned_cols=111 Identities=20% Similarity=0.424 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCe---EEEEeccCccCcccHHHHHHhcc------cce
Q 006905 448 ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPV---WVMNVVPAEAKINTLGVIYERGL------VGT 518 (626)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v---~~mnv~~~~~~~~~l~~~~~rgl------i~~ 518 (626)
..|...+-+ .+...+. ..-+.||-+|=|.|-.+..+.+++. |+ ++.++..++.-.+-|- |-.
T Consensus 84 m~WEtpiMh--a~A~ai~--tkggrvLnVGFGMgIidT~iQe~~p~~H~I-----iE~hp~V~krmr~~gw~ek~nViil 154 (271)
T KOG1709|consen 84 MRWETPIMH--ALAEAIS--TKGGRVLNVGFGMGIIDTFIQEAPPDEHWI-----IEAHPDVLKRMRDWGWREKENVIIL 154 (271)
T ss_pred hhhhhHHHH--HHHHHHh--hCCceEEEeccchHHHHHHHhhcCCcceEE-----EecCHHHHHHHHhcccccccceEEE
Confidence 457665543 2222233 3467799999999999988887754 33 3566678888888775 444
Q ss_pred eccccccCCCCC-Cccceeeeccccc-cCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 519 YTNWCEAMSTYP-RTYDLIHADSVFS-LYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 519 ~~~~~e~~~~yp-~t~Dlih~~~~f~-~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
-..|-....+.| ..||-|.- ..|+ +++ ++-..-.-+-|+|+|||.+-+-
T Consensus 155 ~g~WeDvl~~L~d~~FDGI~y-DTy~e~yE---dl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 155 EGRWEDVLNTLPDKHFDGIYY-DTYSELYE---DLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ecchHhhhccccccCcceeEe-echhhHHH---HHHHHHHHHhhhcCCCceEEEe
Confidence 557888899999 88998875 3342 333 4445666778999999998774
No 497
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=77.12 E-value=6.6 Score=39.29 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=63.0
Q ss_pred hcCCCCCceeEEeccCchhhHhhhhhCC----CeEEEEeccCccCc-------ccHHHHHHhcccc--eeccccccCCCC
Q 006905 463 QLGQSGRYRNILDMNAHLGGFAAALIDF----PVWVMNVVPAEAKI-------NTLGVIYERGLVG--TYTNWCEAMSTY 529 (626)
Q Consensus 463 ~~~~~~~~r~vlD~g~g~G~faa~l~~~----~v~~mnv~~~~~~~-------~~l~~~~~rgli~--~~~~~~e~~~~y 529 (626)
.|.+ --+|.|+=-|-|-|.+-|... | .|-|++|.+... .+-.++.|-++-. .+..---++. -
T Consensus 45 Glkp---g~tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~ 119 (238)
T COG4798 45 GLKP---GATVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-A 119 (238)
T ss_pred ccCC---CCEEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-C
Confidence 3555 456999999999998887653 5 678999988721 2222344444411 1110001111 2
Q ss_pred CCccceeeeccccccCC----CCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 530 PRTYDLIHADSVFSLYK----DRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 530 p~t~Dlih~~~~f~~~~----~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
|.-.|++.........+ +-....++-.++.+.|||||.+.+-|.
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 36666655433322111 124557899999999999999999754
No 498
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=76.78 E-value=11 Score=41.16 Aligned_cols=102 Identities=23% Similarity=0.247 Sum_probs=59.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCe-EEEEeccCccCcccHHHHHHhcc-ccee--ccccccCC----CCCC--ccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDFPV-WVMNVVPAEAKINTLGVIYERGL-VGTY--TNWCEAMS----TYPR--TYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v-~~mnv~~~~~~~~~l~~~~~rgl-i~~~--~~~~e~~~----~yp~--t~Dlih~~ 539 (626)
--.||||-|+.||=+++|++.-- -.+-|+++|.+..-+....++-- .|+- .--+..-. .++. .||-|-.+
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlD 236 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLD 236 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEEC
Confidence 47899999999998888876521 00127899998766665554422 1111 11112222 2332 49977642
Q ss_pred ------cccc---cCCCC---CCHH-------HHHHHhhhhccCCcEEEEE
Q 006905 540 ------SVFS---LYKDR---CETE-------DILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 540 ------~~f~---~~~~~---c~~~-------~~l~E~dRiLRPgG~~i~~ 571 (626)
|++. ....+ -++. .+|...-++|||||.++.+
T Consensus 237 aPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 237 APCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred CCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3332 00010 1111 3888899999999999997
No 499
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=76.62 E-value=3.7 Score=45.03 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=61.5
Q ss_pred eEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhc----c--cceec-cccccCCCCCCccceeeecccc
Q 006905 472 NILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERG----L--VGTYT-NWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rg----l--i~~~~-~~~e~~~~yp~t~Dlih~~~~f 542 (626)
+|||+-||+|.+|..++.+ ++ -.|+.+|.++..++.+.+.- + +-+++ |-..-+..-...||+|..+- |
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 6999999999999999886 44 35777888877777664432 1 22333 11111111125799999866 5
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.. ....+...-+.+++||.+.++
T Consensus 124 Gs------~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 GT------PAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CC------cHHHHHHHHHhcccCCEEEEE
Confidence 31 135777888899999999997
No 500
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=76.58 E-value=26 Score=39.93 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEc
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--------NIITMSFAPRDTHEAQVQFALERGVP--ALIGVL 264 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--------~V~avdis~~dls~a~i~~A~erg~~--~~~~v~ 264 (626)
.+.++.|.+++.... ..+|.|-.||+|.+.....+. .+.+.++......-+..+.. -+|+. +.....
T Consensus 172 ~~v~~liv~~l~~~~--~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~-lhgi~~~~~i~~~ 248 (489)
T COG0286 172 REVSELIVELLDPEP--RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLI-LHGIEGDANIRHG 248 (489)
T ss_pred HHHHHHHHHHcCCCC--CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHH-HhCCCcccccccc
Confidence 445666777775533 348999999999665443331 24555654433333333322 23443 344444
Q ss_pred ccccCC-C----CCCCeeEEEeccccc--ccccc---------------------H-HHHHHHHHhcccCCeEEEEEeC
Q 006905 265 AAERLP-Y----PSRAFDMAHCSRCLI--PWNQF---------------------G-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 265 d~~~Lp-f----~d~sFDlV~~~~~l~--h~~~~---------------------~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+...-| . ..+.||.|+++.-+. .|... . ..++..+.+.|+|||...+..+
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 433333 2 336799999866552 22211 0 3688999999999997777654
Done!