BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006908
(626 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 183/404 (45%), Gaps = 27/404 (6%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP +V K +GK SH EP+ F+ GK +V K
Sbjct: 30 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
++G+ TM R E + +Y S P +P + D+ D
Sbjct: 90 WDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIP----SNATLFFEIELLDFKGEDLFED 145
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
G +I+R R G+G P + + +H +G +D R + F+ GE
Sbjct: 146 GGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGE 192
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
G +P G + + M E ++ P Y + + +P + A + +E+ L FEK
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 252
Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF 442
K+ + +++A ++ G FK GK+ A +Y K++ ++E K
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Query: 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
LN+A C LKL E K++E C+K L + A+ KGLYRRG A + + EFE A+
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 503 DFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
DFE +++V+ ++ A +S +K+ +E + R+ + +F K
Sbjct: 373 DFEKVLEVNPQNKA-ARLQISMCQKKAKEHNERDRRIYANMFKK 415
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P LGK +++ G+ TM +GE+ KP+ YG + P + L FE
Sbjct: 76 PFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFE 131
Query: 138 IEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEP 197
IE++DF K + + +D G++++ +G+G+ P V+ + + G G++ +
Sbjct: 132 IELLDF-KGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-GRMF----DCRD 185
Query: 198 YFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQY 232
FT G+ E +P G++ + M REE+ ++Y+ +Y
Sbjct: 186 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRY 223
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 166/344 (48%), Gaps = 25/344 (7%)
Query: 50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
+V H T LDG +S+R + + LG+ +++ G +GI TM KGE ++F +
Sbjct: 48 EVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTI 103
Query: 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
P++ YGE +P T P + L F++E++ + + IA D G+ KK++ EG WE P
Sbjct: 104 PPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENP 159
Query: 170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
+ P EV A+ DG ++S EG FT + L + TM + EK ++ V
Sbjct: 160 KDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK 216
Query: 230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPM 283
QY P ++ V ++ D +++K+ +++ +G
Sbjct: 217 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG---Y 273
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
+ P +++ V G L ++ VF D +P EF + E V EG + V M G
Sbjct: 274 ERPNEGAVVTVKITGKL--QDGTVFLKKGHDEQ-EPFEFKTDEEAVIEGLDRAVLNMKKG 330
Query: 344 EIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEKPKD 385
E+ALVT PP+YAY + + A VP + + +E+EL+ F K K+
Sbjct: 331 EVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKE 374
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 11/207 (5%)
Query: 29 GSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
G + K +++ +V R DG +V + + + +
Sbjct: 143 GGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEG--------VEFTVKDGHL 194
Query: 89 LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS-TFPKDEELHFEIEMIDFAKAK 147
L + + TM KGE + +KPQ +GE P A P + L ++E++ +
Sbjct: 195 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT 254
Query: 148 IIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLIL--SHREGEPYFFTFGKS 205
I DD ++KKV+ E +G+E P V I+ K DG + L H E EP+ F +
Sbjct: 255 EIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEE 314
Query: 206 EVPKGLEMGIGTMTREEKAVIYVTSQY 232
V +GL+ + M + E A++ + +Y
Sbjct: 315 AVIEGLDRAVLNMKKGEVALVTIPPEY 341
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
D P + VHY G LL+ +K +D+ D D +F G+G V +G++ ++ M G
Sbjct: 41 DTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKKG 96
Query: 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 400
E AL T PP+ AY + P +P A +Q+++ELL + +D G F I+ E +K
Sbjct: 97 ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 155
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 24/226 (10%)
Query: 165 GWETPRAPYEVKAWISAKTGDGKLILSHREGEPYF-FTFGKSEVPKGLEMGIGTMTREEK 223
GW+TP EV+ + DGK S R+ + F F G+ +V KG + GI TM + E
Sbjct: 39 GWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGEN 98
Query: 224 AVIYVTSQYL---TPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRLIKRRIRDG-KG 279
A+ + + + SP P + VRD+ DG + K+ +++G K
Sbjct: 99 ALFTIPPELAYGESGSP--PTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKW 156
Query: 280 EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 339
E P D + V Y+ L D V + + +EF+ +G + V+
Sbjct: 157 ENPKDP----DEVFVKYEARL--------EDGTVVSKSEGVEFTVKDGHLCPALAKAVKT 204
Query: 340 MLPGEIALVTCPPDYAYDKFLRPA-----NVPEGAHIQWEIELLGF 380
M GE L+ P Y + + RPA VP A + ++EL+ +
Sbjct: 205 MKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSW 250
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 164/341 (48%), Gaps = 25/341 (7%)
Query: 50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
+V H T LDG +S+R + + LG+ +++ G +GI TM KGE ++F +
Sbjct: 32 EVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTI 87
Query: 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
P++ YGE +P T P + L F++E++ + + IA D G+ KK++ EG WE P
Sbjct: 88 PPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENP 143
Query: 170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
+ P EV A+ DG ++S EG FT + L + TM + EK ++ V
Sbjct: 144 KDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK 200
Query: 230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPM 283
QY P ++ V ++ D +++K+ +++ +G
Sbjct: 201 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG---Y 257
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
+ P +++ V G L ++ VF D +P EF + E V EG + V M G
Sbjct: 258 ERPNEGAVVTVKITGKL--QDGTVFLKKGHDEQ-EPFEFKTDEEAVIEGLDRAVLNMKKG 314
Query: 344 EIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEK 382
E+ALVT PP+YAY + + A VP + + +E+EL+ F K
Sbjct: 315 EVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK 355
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 11/207 (5%)
Query: 29 GSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
G + K +++ +V R DG +V + + + +
Sbjct: 127 GGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEG--------VEFTVKDGHL 178
Query: 89 LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS-TFPKDEELHFEIEMIDFAKAK 147
L + + TM KGE + +KPQ +GE P A P + L ++E++ +
Sbjct: 179 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT 238
Query: 148 IIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLIL--SHREGEPYFFTFGKS 205
I DD ++KKV+ E +G+E P V I+ K DG + L H E EP+ F +
Sbjct: 239 EIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEE 298
Query: 206 EVPKGLEMGIGTMTREEKAVIYVTSQY 232
V +GL+ + M + E A++ + +Y
Sbjct: 299 AVIEGLDRAVLNMKKGEVALVTIPPEY 325
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
D P + VHY G LL+ +K +D+ D D +F G+G V +G++ ++ M G
Sbjct: 25 DTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKKG 80
Query: 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 400
E AL T PP+ AY + P +P A +Q+++ELL + +D G F I+ E +K
Sbjct: 81 ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 139
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 24/226 (10%)
Query: 165 GWETPRAPYEVKAWISAKTGDGKLILSHREGEPYF-FTFGKSEVPKGLEMGIGTMTREEK 223
GW+TP EV+ + DGK S R+ + F F G+ +V KG + GI TM + E
Sbjct: 23 GWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGEN 82
Query: 224 AVIYVTSQYL---TPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRLIKRRIRDG-KG 279
A+ + + + SP P + VRD+ DG + K+ +++G K
Sbjct: 83 ALFTIPPELAYGESGSP--PTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKW 140
Query: 280 EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 339
E P D + V Y+ L D V + + +EF+ +G + V+
Sbjct: 141 ENPKDP----DEVFVKYEARL--------EDGTVVSKSEGVEFTVKDGHLCPALAKAVKT 188
Query: 340 MLPGEIALVTCPPDYAYDKFLRPA-----NVPEGAHIQWEIELLGF 380
M GE L+ P Y + + RPA VP A + ++EL+ +
Sbjct: 189 MKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSW 234
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 185/404 (45%), Gaps = 27/404 (6%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP V + K +GK SH EP+ F+ GK +V K
Sbjct: 30 DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
++G+ TM + E + +Y + P +P + D+L D
Sbjct: 90 WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIP----SNATLFFEVELLDFKGEDLLED 145
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
G +I+R R G+G P + + +H +G +VF D + + F+ GE
Sbjct: 146 GGIIRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGE 192
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
G +P G + + M E ++ P Y + + +P + A + +E+ L FEK
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 252
Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF 442
K+ + +++A ++ G FK GK+ A +Y K++ ++E K
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Query: 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
LN+A C LKL E K++E C+K L + A+ KGLYRRG A + + EFE A+
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 503 DFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
DFE +++V+ ++ A + +K+ +E + R+ + +F K
Sbjct: 373 DFEKVLEVNPQNKA-ARLQIFMCQKKAKEHNERDRRTYANMFKK 415
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P +GK +++ G+ TM KGE+ KP+ YG + P + L FE
Sbjct: 76 PFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG----ATGSLPKIPSNATLFFE 131
Query: 138 IEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEP 197
+E++DF K + + +D G++++ G+G+ P V+ + + G G++ +
Sbjct: 132 VELLDF-KGEDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCG-GRVF----DCRD 185
Query: 198 YFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQY 232
FT G+ E +P G++ + M REE+ ++++ +Y
Sbjct: 186 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRY 223
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 165/324 (50%), Gaps = 40/324 (12%)
Query: 263 MLGDGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
M DG +I+R G+G P + + + L +YK L D + L
Sbjct: 21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 373
F GEG +P G E ++ M GE ++V P YA+ +KF +P A +++
Sbjct: 67 FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 374 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 433
E+ L FEK K+ ++ + ++++ ++ G FKEGK++ A +Y+K++ + +
Sbjct: 123 ELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 434 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493
+EE + R HLN+A C LKL +IE+CNK L+ + + KGL+RRG A++A
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLA 242
Query: 494 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE---SKARKQFKGLFDKKPGE 550
+ +FE A+ DF+ ++++ P+ AA ++L +Q + ++ +K + +F++ E
Sbjct: 243 VNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEE 298
Query: 551 ISEVGIENQGEDQAAGKNENDDSE 574
EN+ + +A+ + D+E
Sbjct: 299 ------ENKAKAEASSGDHPTDTE 316
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSE-- 206
+ +D G+++++ G+G+ P V+ + D + RE F G+ E
Sbjct: 21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK--LFDQRE---LRFEIGEGENL 75
Query: 207 -VPKGLEMGIGTMTREEKAVIYVTSQY 232
+P GLE I M + E +++Y+ Y
Sbjct: 76 DLPYGLERAIQRMEKGEHSIVYLKPSY 102
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
GL I M KGE S+ +KP +G P + EL +E+ + F KAK
Sbjct: 80 GLERAIQRMEKGEHSIVYLKPSYAFG---SVGKEKFQIPPNAELKYELHLKSFEKAK 133
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 162/324 (50%), Gaps = 40/324 (12%)
Query: 263 MLGDGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
M DG +I+R G+G P + + + L +YK L D + L
Sbjct: 21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 373
F GEG +P G E ++ GE ++V P YA+ +KF +P A +++
Sbjct: 67 FEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 374 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 433
E+ L FEK K+ + + ++++ ++ G FKEGK++ A +Y+K++ + +
Sbjct: 123 ELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 434 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493
+EE + R HLN+A C LKL +IE+CNK L+ + + KGL RRG A++A
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA 242
Query: 494 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE---SKARKQFKGLFDKKPGE 550
+ +FE A+ DF+ ++++ P+ AA ++L +Q + ++ +K + +F++ E
Sbjct: 243 VNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEE 298
Query: 551 ISEVGIENQGEDQAAGKNENDDSE 574
EN+ + +A+ + D+E
Sbjct: 299 ------ENKAKAEASSGDHPTDTE 316
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 147/300 (49%), Gaps = 36/300 (12%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++ K+ I++G G P S +HY+ N + K F DT ++ QP+E G
Sbjct: 48 DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 326 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 381
E G + V M GE ALV + AY K F P NVP A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 382 KPKDWTGLSFDGIMDE----AEKIRVTGNRLFKEGKFELAKAKYEKVLR----DFN---H 430
+ K+ S D ++E A++ ++ GN LFKE K E A +YE + DF +
Sbjct: 160 ETKEGKARS-DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLY 218
Query: 431 VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490
QD + + +N HLN+AACL+KL ++I CN VL + K L+RRG A
Sbjct: 219 GKYQD-----MALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA 273
Query: 491 YMALGEFEEAQRDFEMMMKVDKSSEPDATA---ALSKLKKQRQEVESKARKQFKGLFDKK 547
LG+ + A+ DF K PD A L L +Q + + K ++ +KG+F K
Sbjct: 274 KAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 78 PIRHVLGKSKI-LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHF 136
PI VLGK K L GL G+ +M GE ++ + ++ YG++ + P+ P +L +
Sbjct: 94 PIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEG-NFSFPNV-PPMADLLY 151
Query: 137 EIEMIDFAKAK 147
E+E+I F + K
Sbjct: 152 EVEVIGFDETK 162
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR--DFNHVNPQDDEEGKVFVGKRNLL 449
D I+ +E ++ GN FK +E+A KY KVLR + + +D + K+ + +
Sbjct: 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV 276
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
LN+ AC LK+ + + ++++C + L+ +P++ K LYRR + L E+++A D + +
Sbjct: 277 -LNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335
Query: 510 V---DKSSEPDATAALSKLKKQRQEVESKARKQF 540
+ DK+ + + K+K Q+ + ++ K F
Sbjct: 336 IAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P LGK +++ G+ TM KGE+ KP+ YG + P + L FE
Sbjct: 80 PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFE 135
Query: 138 IEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEP 197
IE++DF K + + +D G++++ +G+G+ P V+ + + G G++ +
Sbjct: 136 IELLDF-KGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-GRMF----DCRD 189
Query: 198 YFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQY 232
FT G+ E +P G++ + M REE+ ++Y+ +Y
Sbjct: 190 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRY 227
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 101/245 (41%), Gaps = 27/245 (11%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP +V K +GK SH EP+ F+ GK +V K
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
++G+ TM + E + +Y S P +P + D+ D
Sbjct: 94 WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIP----SNATLFFEIELLDFKGEDLFED 149
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
G +I+R R G+G P + + +H +G +D R + F+ GE
Sbjct: 150 GGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGE 196
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
G +P G + + M E ++ P Y + + +P + A + +E+ L FEK
Sbjct: 197 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 256
Query: 383 PKD-W 386
K+ W
Sbjct: 257 AKESW 261
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG---KRNLLHLNVAACL 457
I GNRL++EG + A AKY + ++ ++ ++ + L LN C
Sbjct: 17 IHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCK 76
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 517
L + E + ++ C+ +L+ +VK ++RG A+ A+ +EAQ DF ++++D + P
Sbjct: 77 LVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPV 136
Query: 518 ATAALSKLKKQRQEVESKARKQFKGLF 544
+ L L+ + ++ + + + +F+G+F
Sbjct: 137 VSRELQALEARIRQKDEEDKARFRGIF 163
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R G GE + P+ + VHYKG L N +K +D+ D + +P FS G
Sbjct: 34 DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 87 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP +V K +GK SH EP+ F+ GK +V K
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 211 LEMGIGTMTREEKAVIYVTSQY 232
++G+ TM + E + +Y
Sbjct: 94 WDIGVATMKKGEICHLLCKPEY 115
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P LGK +++ G+ TM KGE+ KP+ YG + P + L FE
Sbjct: 80 PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGS----AGSLPKIPSNATLFFE 135
Query: 138 IEMIDF 143
IE++DF
Sbjct: 136 IELLDF 141
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R G GE + P+ + VHYKG L N +K +D+ D + +P FS G
Sbjct: 34 DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 87 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP +V K +GK SH EP+ F+ GK +V K
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 211 LEMGIGTMTREEKAVIYVTSQY 232
++G+ TM + E + +Y
Sbjct: 94 WDIGVATMKKGEICHLLCKPEY 115
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P LGK +++ G+ TM KGE+ KP+ YG + P + L FE
Sbjct: 80 PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGS----AGSLPKIPSNATLFFE 135
Query: 138 IEMIDF 143
IE++DF
Sbjct: 136 IELLDF 141
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R G GE + P+ + VHYKG L N +K +D+ D + +P FS G
Sbjct: 18 DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 71 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP +V K +GK SH EP+ F+ GK +V K
Sbjct: 18 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 211 LEMGIGTMTREEKAVIYVTSQY 232
++G+ TM + E + +Y
Sbjct: 78 WDIGVATMKKGEICHLLCKPEY 99
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P LGK +++ G+ TM KGE+ KP+ YG + P + L FE
Sbjct: 64 PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGS----AGSLPKIPSNATLFFE 119
Query: 138 IEMIDF 143
IE++DF
Sbjct: 120 IELLDF 125
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
DG + AE+++ N FK +E A Y + + +NP + ++ G R+L +L
Sbjct: 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAI----ELNPSN----AIYYGNRSLAYL 58
Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
LG+ ++IE K ++KG YRR + MALG+F A RD+E ++KV
Sbjct: 59 RTECYGYALGDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV 110
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R G GE + P+ + VHYKG L N +K +D+ D + +P FS G
Sbjct: 18 DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 71 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
D GV+K V G G ETP +V K +GK SH EP+ F+ GK +V K
Sbjct: 18 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 211 LEMGIGTMTREEKAVIYVTSQY 232
++G+ TM + E + +Y
Sbjct: 78 WDIGVATMKKGEICHLLCKPEY 99
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P LGK +++ G+ TM KGE+ KP+ YG + P + L FE
Sbjct: 64 PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGS----AGSLPKIPSNATLFFE 119
Query: 138 IEMIDF 143
IE++DF
Sbjct: 120 IELLDF 125
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL---LHLNVAACL 457
I+ GN FK+ + A KY++ L F H DD+ + K+N+ +LN+A C
Sbjct: 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--ILLDKKKNIEISCNLNLATCY 98
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS--- 514
K + K+I+ +KVL + +VK LY+ G+A M G EEA+ + ++ ++
Sbjct: 99 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
Query: 515 EPDATAALSKLKKQRQEVESKARKQFKGLFDKKP 548
++KLK+ R+ K + F G+FDK P
Sbjct: 159 RNSYELCVNKLKEARK----KDKLTFGGMFDKGP 188
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 452
G + AE+++ N FK +E A Y + + +NP + ++ G R+L +L
Sbjct: 1 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN----AIYYGNRSLAYLR 52
Query: 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512
LG+ ++IE K ++KG YRR + MALG+F A RD+E ++KV
Sbjct: 53 TECYGYALGDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV-- 103
Query: 513 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQG-EDQAAG 566
+P A K ++ + V+ KA ++ + K + + IE+ ED+ +G
Sbjct: 104 --KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R+G G + P+ + VHY G LL+ K +D+ +D + F G
Sbjct: 30 DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 82
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ + M GE+ +TC P+YAY P +P A + +E+EL F+
Sbjct: 83 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 138
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 31 LMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
++K + R +V H T LDG +S+ + LGK +++
Sbjct: 33 VLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIK 88
Query: 91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
I TM GEV KP+ YG +P P + L FE+E+ +F
Sbjct: 89 AWDIAIATMKVGEVCHITCKPEYAYGS----AGSPPKIPPNATLVFEVELFEF 137
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R+G G + P+ + VHY G LL+ K +D+ +D + F G
Sbjct: 29 DEGVLKVIKREGTG---TETPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 81
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ V M GE+ +TC P+YAY P +P A + +E+EL F+
Sbjct: 82 KGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 137
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 31 LMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
++K + R +V H T LDG +S+ + LGK +++
Sbjct: 32 VLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIK 87
Query: 91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA 150
+ TM GE+ KP+ YG +P P + L FE+E+ +F +
Sbjct: 88 AWDIAVATMKVGELCRITCKPEYAYGS----AGSPPKIPPNATLVFEVELFEFKGEDLTD 143
Query: 151 DDFGV 155
D+ GV
Sbjct: 144 DEDGV 148
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 152 DFGVVKKVINEGQGWETP----RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
D GV+K + EG G ETP R W+ T K S + + F GK EV
Sbjct: 29 DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGT---KFDSSLDRKDKFSFDLGKGEV 85
Query: 208 PKGLEMGIGTMTREEKAVIYVTSQY 232
K ++ + TM E I +Y
Sbjct: 86 IKAWDIAVATMKVGELCRITCKPEY 110
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R+G G + P+ + VHY G LL+ K +D+ +D + F G
Sbjct: 34 DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
+G V + +++ + M GE+ +TC P+YAY P +P A + +E+EL F+
Sbjct: 87 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 142
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 31 LMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
++K + R +V H T LDG +S+ + LGK +++
Sbjct: 37 VLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIK 92
Query: 91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
I TM GEV KP+ YG +P P + L FE+E+ +F
Sbjct: 93 AWDIAIATMKVGEVCHITCKPEYAYGS----AGSPPKIPPNATLVFEVELFEF 141
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++K R+G G + P+ + VHY G LL+ K +D+ +D + F G
Sbjct: 50 DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 102
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
+G V + +++ + M GE+ +TC P+YAY P +P A + +E+EL F
Sbjct: 103 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 157
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 17/206 (8%)
Query: 31 LMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
++K + R +V H T LDG +S+ + LGK +++
Sbjct: 53 VLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIK 108
Query: 91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKII- 149
I TM GEV KP+ YG +P P + L FE+E+ +F +
Sbjct: 109 AWDIAIATMKVGEVCHITCKPEYAYGS----AGSPPKIPPNATLVFEVELFEFKGEDLTE 164
Query: 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSE--- 206
+D G+++++ G+G+ P V+ + D + RE F G+ E
Sbjct: 165 EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK--LFDQRE---LRFEIGEGENLD 219
Query: 207 VPKGLEMGIGTMTREEKAVIYVTSQY 232
+P GLE I M + E +++Y+ Y
Sbjct: 220 LPYGLERAIQRMEKGEHSIVYLKPSY 245
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 24/243 (9%)
Query: 152 DFGVVKKVINEGQGWETP----RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
D GV+K + EG G E P R W+ T K S + + F GK EV
Sbjct: 50 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT---KFDSSLDRKDKFSFDLGKGEV 106
Query: 208 PKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLG-- 265
K ++ I TM E I +Y S P + D+
Sbjct: 107 IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEE 166
Query: 266 DGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
DG +I+R G+G P + + + L +YK L ++ + F E
Sbjct: 167 DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF------------EIGE 214
Query: 325 GEGL-VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
GE L +P G E ++ M GE ++V P YA+ + +P A +++E+ L FEK
Sbjct: 215 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK 274
Query: 383 PKD 385
K+
Sbjct: 275 AKE 277
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
A++ + GN FK+G Y +R +N +D E +L+ N AACL
Sbjct: 13 AQEEKNKGNEYFKKGD-------YPTAMRHYNEAVKRDPENA--------ILYSNRAACL 57
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
KL E +++++ C+ + + +KG R+ +A+ E+ +AQR +E ++VD S+E
Sbjct: 58 TKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
DG ++K ++G+G + P + + VHY G L N K +D+ D G F+ G
Sbjct: 13 DGGVLKLIKKEGQG---VVKPTTGTTVKVHYVGTLENGTK---FDSSRDR-GDQFSFNLG 65
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
G V +G+++ V M GE+A T DY Y P +P GA + +E+EL
Sbjct: 66 RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELF 118
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 11/137 (8%)
Query: 23 RMKIVP---GSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPI 79
++ I P G ++K + + V H +G +S+R +G
Sbjct: 5 KIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQF 60
Query: 80 RHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIE 139
LG+ ++ G G+ TM KGEV+ F ++ YG+ +P P L FE+E
Sbjct: 61 SFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGD----AGSPPKIPGGATLIFEVE 116
Query: 140 MIDFAKAKIIADDFGVV 156
+ +++ I D G +
Sbjct: 117 LFEWSAEDISPDRDGTI 133
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 139 EMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEP 197
E ID K D GV+K + EGQG P VK +G S R+ G+
Sbjct: 4 EKIDITPKK----DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQ 59
Query: 198 YFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY 232
+ F G+ V KG ++G+ TMT+ E A + S Y
Sbjct: 60 FSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDY 94
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
DG + AE+++ N FK +E A Y + + +NP + ++ G R+L +L
Sbjct: 15 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN----AIYYGNRSLAYL 66
Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
L + ++IE K ++KG YRR + MALG+F A RD+E ++KV
Sbjct: 67 RTECYGYALNDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV- 118
Query: 512 KSSEPDATAALSKLKK 527
K + DA + K
Sbjct: 119 KPHDKDAKMKYQECNK 134
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML N +K +D+ D + +P +F G+ V +GFE M G+
Sbjct: 16 PKKGQTCVVHYTGMLQNGKK---FDSSRDRN-KPFKFRIGKQEVIKGFEEGAAQMSLGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +TC PD AY P +P A + +++ELL E
Sbjct: 72 AKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 107
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 78 PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
P + +GK +++ G EG M G+ + P + YG P P + L F+
Sbjct: 45 PFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGA----TGHPGVIPPNATLIFD 100
Query: 138 IEMIDF 143
+E+++
Sbjct: 101 VELLNL 106
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + +GK S R+ +P+ F GK EV KG E
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFE 60
Query: 213 MGIGTMTREEKAVIYVT 229
G M+ ++A + T
Sbjct: 61 EGAAQMSLGQRAKLTCT 77
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P + VHY G L + KVF +R G+P F+ G G V G++ V M G+
Sbjct: 17 PKAGQVAVVHYTGTL--ADGKVFDSSRTR--GKPFRFTVGRGEVIRGWDEGVAQMSVGQR 72
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A + C PDYAY P +P A + +++ELL E
Sbjct: 73 AKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 50 QVAY-HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFK 108
QVA H T DG + +S+R+ +G P R +G+ +++ G EG+ M G+ +
Sbjct: 21 QVAVVHYTGTLADGKVFDSSRT----RGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLV 76
Query: 109 MKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMI 141
P YG P P + L F++E++
Sbjct: 77 CSPDYAYGSR----GHPGVIPPNATLTFDVELL 105
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V GFE V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGFEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG---KRNLLHLNVAACL 457
I GNRL++EG + A AKY + ++ ++ ++ + L LN C
Sbjct: 11 IHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCK 70
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 517
L + E + ++ C+ +L+ +VK ++RG A+ A+ +EAQ DF ++++D + P
Sbjct: 71 LVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPV 130
Query: 518 ATAALSKLKKQ 528
+ L L+ +
Sbjct: 131 VSRELQALEAR 141
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFVLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPNATLIFDVELLKLE 107
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + VLGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P + L F++E++
Sbjct: 81 AYGA----TGHPGIIPPNATLIFDVELL 104
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 18 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 73
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 74 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 109
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 27 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 82
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 83 AYGA----TGHPGIIPPHATLVFDVELL 106
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKG 210
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G
Sbjct: 1 SMGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 60
Query: 211 LEMGIGTMTREEKAVIYVTSQY 232
E G+ M+ ++A + ++ Y
Sbjct: 61 WEEGVAQMSVGQRAKLTISPDY 82
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL 458
E++R GN LFK G + A A Y + L PQD + +LH N AAC L
Sbjct: 29 EQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD----------QAVLHRNRAACHL 76
Query: 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
KL + K+ +K ++ + VK LYRR A LG ++A D + + ++ ++
Sbjct: 77 KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 22/142 (15%)
Query: 393 GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL 449
G MD AE + GN +K+G ++ A Y+K L ++P +
Sbjct: 1 GAMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALE----LDPNNASA----------- 45
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
N+ K G+ +K+IE K L+ +P + K YRRG AY G++++A D++ ++
Sbjct: 46 WYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
Query: 510 VDKSSEPDATAALSKLKKQRQE 531
+D P+ A L +Q+
Sbjct: 106 LD----PNNAKAKQNLGNAKQK 123
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 158 KVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIG 216
+ I+ G G P+ + DGK S R+ +P+ F GK EV +G E G+
Sbjct: 5 ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 217 TMTREEKAVIYVTSQY 232
M+ ++A + ++ Y
Sbjct: 65 QMSVGQRAKLTISPDY 80
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGLEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +GLE
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ GL EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKAGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+A + DGK S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDKN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGVPGIIPPHATLVFDVELLKLE 107
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R K P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----KNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGVPGIIPPHATLVFDVELL 104
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G++ V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWQEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQ 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
DG ++K +R G+G + P + + VHY G L KVF +R N P +F G
Sbjct: 14 DGGVVKTILRKGEGG-EENAPKKGNEVTVHYVGKL-ESSGKVFDSSRERN--VPFKFHLG 69
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
+G V +G+++CV M E V Y Y + ++P + + +EIEL+ F
Sbjct: 70 QGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 149 IADDFGVVKKVINEGQGWE--TPRAPYEVKA-WISAKTGDGKLILSHREGE-PYFFTFGK 204
+ +D GVVK ++ +G+G E P+ EV ++ GK+ S RE P+ F G+
Sbjct: 11 LTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQ 70
Query: 205 SEVPKGLEMGIGTMTREEKAVIYVTSQY 232
EV KG ++ + +MT+ EK + + S+Y
Sbjct: 71 GEVIKGWDICVASMTKNEKCSVRLDSKY 98
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 61 DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC 120
G + +S+R + +P + LG+ +++ G + +M K E ++ + YGE+ C
Sbjct: 50 SGKVFDSSRE----RNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGC 105
Query: 121 PVAAPSTFPKDEELHFEIEMIDF 143
+ P + L FEIE+I F
Sbjct: 106 ----GESIPGNSVLIFEIELISF 124
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML E+ K F +R N +P +F G+ V G+ V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWAEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG +S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK S R+ +P+ F GK EV +G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWA 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD--EEGKVFVGKRNL- 448
D + E +R GN LF + ++ A Y L + + ++ E V + ++N+
Sbjct: 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
L+ N++ C L +G+ ++ E ++VL + K L+RR A +A + +EA+ D ++++
Sbjct: 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 509 KVDKSSEPDATAALSK----LKKQRQEVESKARKQFKGLF 544
+ + P A + +++ + ++R E ++ +R + +F
Sbjct: 125 R----NHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML + KKV D+ D + +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML-EDGKKV--DSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG V+S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKVDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK + S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
P VHY GML + +K D+ D + +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGMLEDGKK---MDSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 54 HCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQM 113
H T DG ++S+R + P + +LGK +++ G EG+ M G+ + + P
Sbjct: 25 HYTGMLEDGKKMDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80
Query: 114 HYGEDDCPVAAPSTFPKDEELHFEIEMI 141
YG P P L F++E++
Sbjct: 81 AYGA----TGHPGIIPPHATLVFDVELL 104
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
GV + I+ G G P+ + DGK + S R+ +P+ F GK EV +G E
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 213 MGIGTMTREEKAVIYVTSQY 232
G+ M+ ++A + ++ Y
Sbjct: 61 EGVAQMSVGQRAKLTISPDY 80
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 157 KKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGI 215
KKV+ G G P+A +V + DGK S R G+P+ FT G EV KG + G+
Sbjct: 28 KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGV 87
Query: 216 GTMTREEKAVIYVTSQ 231
TMT EKA+ + Q
Sbjct: 88 ATMTLGEKALFTIPYQ 103
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G + K F +R + G+P +F+ G G V +G++ V M GE AL T P
Sbjct: 46 VTVHYDGRF--PDGKQFDSSR--SRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIP 101
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
AY + P +P A + +E+ELL
Sbjct: 102 YQLAYGERGYPPVIPPKATLVFEVELL 128
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
+V H R DG +S+RS +G P + LG +++ G +G+ TM GE ++F +
Sbjct: 45 KVTVHYDGRFPDGKQFDSSRS----RGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTI 100
Query: 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMI 141
Q+ YGE P P L FE+E++
Sbjct: 101 PYQLAYGERGY----PPVIPPKATLVFEVELL 128
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507
+ + N++AC + G+ K IE K L+ P H K L RR A +LG F +A D ++
Sbjct: 56 VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
K +D NP + Y RG Y L +++ A+ DF+
Sbjct: 297 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 330
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507
+ + N++AC + G+ K IE K L+ P H K L RR A +LG F +A D ++
Sbjct: 60 VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
K +D NP + Y RG Y L +++ A+ DF+
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
+G + RI G G P L+ +HY G L N +K +D+ VD G P + + G
Sbjct: 5 EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLENGQK---FDSSVDR-GSPFQCNIG 57
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
G V +G+++ + + GE A +T P YAY P +P + + +++ELL
Sbjct: 58 VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 75 KGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEEL 134
+G P + +G +++ G GIP + GE + + YG P P P + L
Sbjct: 48 RGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYG----PRGFPGLIPPNSTL 103
Query: 135 HFEIEMI 141
F++E++
Sbjct: 104 VFDVELL 110
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K +D+ D + P EF G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 125 VSVHYTGWLTDGQKFDSSKD----RNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 181 PQLGYGAR----GAGGVIPPNATLVFEVELLD 208
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAAGVIPPNATLVFEVELL 207
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 125 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 181 PQLGYGAR----GAAGVIPPNATLVFEVELLD 208
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K F ++ ND P F G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK--FGSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG S++ + P VLG ++ G EG+ M G V +
Sbjct: 125 VSVHYTGWLTDGQKFGSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 181 PQLGYGAR----GAGGVIPPNATLVFEVELLD 208
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
++ DG +IK ++ G E + P + + VHY G L E +D+ D + P +
Sbjct: 11 ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
F +G V +G+++CV M E LV Y Y ++P + + +EIELL F
Sbjct: 67 FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
++ DG +IK ++ G E + P + + VHY G L E +D+ D + P +
Sbjct: 11 ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
F +G V +G+++CV M E LV Y Y ++P + + +EIELL F
Sbjct: 67 FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 125 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 181 PQLGYGAR----GAGGVIPPNATLVFEVELLD 208
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
+ VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 125 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 181 PQLGYGAR----GAGGVIPPNATLVFEVELLD 208
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 12/124 (9%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
D ++ K+ I++G G P S +HY+ N + K F DT ++ QP+E G
Sbjct: 48 DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 326 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 381
E G + V M GE ALV + AY K F P NVP A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 382 KPKD 385
+ K+
Sbjct: 160 ETKE 163
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 78 PIRHVLGKSKI-LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHF 136
PI VLGK K L GL G+ +M GE ++ + ++ YG++ + P+ P +L +
Sbjct: 94 PIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGN-FSFPNV-PPMADLLY 151
Query: 137 EIEMIDFAKAK 147
E+E+I F + K
Sbjct: 152 EVEVIGFDETK 162
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 291 LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTC 350
+L +HY G L E +D+ + + QP FS G G V +G++ + M GE +
Sbjct: 11 VLHMHYTGKL---EDGTEFDSSLPQN-QPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVI 66
Query: 351 PPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
P + Y + P +P GA + +E+ELL E+
Sbjct: 67 PSELGYGERGAPPKIPGGATLVFEVELLKIER 98
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 54 HC--TVRTLDGVIVES---TRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFK 108
HC T DG + ++ T ++ P+ +G K++ G E + TM KGE + +
Sbjct: 24 HCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLE 83
Query: 109 MKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
++P+ YG+ P A P + +L FE+E++D
Sbjct: 84 IEPEWAYGKKGQPDAK---IPPNAKLTFEVELVDI 115
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 283 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDN------DGQPLEFSSGEGLVPEGFEMC 336
+ P ++ Y G L + +DT + + +PL F G G V G++
Sbjct: 14 TNFPKKGDVVHCWYTGTL---QDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEA 70
Query: 337 VRLMLPGEIALVTCPPDYAYDKFLRP-ANVPEGAHIQWEIELL 378
+ M GE A + P++AY K +P A +P A + +E+EL+
Sbjct: 71 LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 54 HC--TVRTLDGVIVES---TRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFK 108
HC T DG + ++ T S+ P+ +G K++ G E + TM KGE + +
Sbjct: 27 HCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLE 86
Query: 109 MKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
++P+ YG+ P A P + +L FE+E++D
Sbjct: 87 IEPEWAYGKKGQPDAK---IPPNTKLIFEVELVDI 118
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 283 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDN------DGQPLEFSSGEGLVPEGFEMC 336
+ P ++ Y G L + +DT + + +PL F G G V G++
Sbjct: 17 TNFPKKGDVVHCWYTGTLPDG---TVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEA 73
Query: 337 VRLMLPGEIALVTCPPDYAYDKFLRP-ANVPEGAHIQWEIELL 378
+ M GE A + P++AY K +P A +P + +E+EL+
Sbjct: 74 LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 318
++ D+ GD ++K IR+G G D D+ + V Y G L + ++ +D+
Sbjct: 18 RMLDISGDRGVLKDVIREGAG----DLVAPDASVLVKYSGYLEHMDRP--FDSNYFRK-T 70
Query: 319 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
P GE + G E+ + M GE+A P+YAY P +P + +EIELL
Sbjct: 71 PRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELL 130
Query: 379 GF 380
F
Sbjct: 131 DF 132
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 83 LGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
LG+ L G+ G+ +M +GE++ F KP YG C P P + + FEIE++D
Sbjct: 76 LGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGC----PPLIPPNTTVLFEIELLD 131
Query: 143 F 143
F
Sbjct: 132 F 132
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
D A ++ GN F++G + A Y + ++ NP+D + L+ N AA
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAK-----------LYSNRAA 58
Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
C KL E + +++ C + + P +KG R+ A A+ ++ +A ++ + +D S +
Sbjct: 59 CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118
Query: 516 PDA 518
A
Sbjct: 119 EAA 121
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T PP
Sbjct: 51 VHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQ 106
Query: 354 YAYDKFLRPANVPEGAHIQWEIELL 378
Y +P A + +E+ELL
Sbjct: 107 LGYGARGAGGVIPPNATLVFEVELL 131
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 49 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 104
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 105 PQLGYGAR----GAGGVIPPNATLVFEVELLD 132
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 291 LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTC 350
L+ VHY+G L ++ +F+ T N+GQP+ F+ G +G++ ++ M GE +
Sbjct: 34 LMLVHYEGYL-EKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLII 92
Query: 351 PPDYAYDKFLRPANVPEGAHIQWEIELL 378
PP Y K + +P + + + I+LL
Sbjct: 93 PPALGYGKEGK-GKIPPESTLIFNIDLL 119
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 185 DGKLILS---HREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228
DG L S H G+P +FT G E KG + G+ M EK + +
Sbjct: 46 DGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLII 92
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T PP
Sbjct: 35 VHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQ 90
Query: 354 YAYDKFLRPANVPEGAHIQWEIELL 378
Y +P A + +E+ELL
Sbjct: 91 LGYGARGAGGVIPPNATLVFEVELL 115
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 33 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 88
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 89 PQLGYGAR----GAGGVIPPNATLVFEVELLD 116
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
EAE+++ GN K FE A Y K + +NP + + N AA
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPANA-----------VYFCNRAAA 55
Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
KLG +++ C + + +PA+ K R G+A +L + EA ++ +++D P
Sbjct: 56 YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD----P 111
Query: 517 DATAALSKLK 526
D S LK
Sbjct: 112 DNETYKSNLK 121
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 393 GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL 449
G MD AE GN +K+G ++ A Y+K L ++P + E
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEA----------- 45
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
N+ K G+ ++IE K L+ +P + + Y G AY G+++EA ++ ++
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Query: 510 VDKSSEPDATAALSKLKKQRQE 531
+D P+ A L +Q+
Sbjct: 106 LD----PNNAEAKQNLGNAKQK 123
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
VHY G L + +K +D+ D + P F G G V +G++ V+ M G + +T PP
Sbjct: 31 VHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPPQ 86
Query: 354 YAYDKFLRPANVPEGAHIQWEIELL 378
Y +P A + +E+ELL
Sbjct: 87 LGYGARGAGGVIPPNATLVFEVELL 111
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 29 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIP 84
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 85 PQLGYGAR----GAGGVIPPNATLVFEVELLD 112
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T PP
Sbjct: 31 VHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQ 86
Query: 354 YAYDKFLRPANVPEGAHIQWEIELL 378
Y +P A + +E+ELL
Sbjct: 87 LGYGAGGAGGVIPPNATLVFEVELL 111
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V+ H T DG +S++ + P VLG ++ G EG+ M G V +
Sbjct: 29 VSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 84
Query: 111 PQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
PQ+ YG A P + L FE+E++D
Sbjct: 85 PQLGYGA----GGAGGVIPPNATLVFEVELLD 112
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
GN +K+G ++ A Y+K L ++P+ E N+ K G+
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALE----LDPRSAEA-----------WYNLGNAYYKQGDYD 52
Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
++IE K L+ +P + Y G AY G+++EA ++ +++D S
Sbjct: 53 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
GN +K+G ++ A Y+K L ++P+ E N+ K G+
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALE----LDPRSAEA-----------WYNLGNAYYKQGDYD 86
Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
++IE K L+ +P + Y G AY G+++EA ++ +++D S
Sbjct: 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
N+ K G+ ++IE K L+ +P + Y G AY G+++EA ++ +++D
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 512 KSS 514
S
Sbjct: 66 PRS 68
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK 459
K+ + L ++G++ A +KYE V++ P E K + H C K
Sbjct: 259 KLIESAEELIRDGRYTDATSKYESVMK----TEPSIAE--YTVRSKERICH-----CFSK 307
Query: 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 519
+ ++I C++VL P +V L R AY+ ++EA +D+E + +E D
Sbjct: 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET---AQEHNENDQQ 364
Query: 520 AALSKLKKQRQEVESKARKQFKGLFDKKPGEISEV 554
K QR +S+ R +K L K+ + E+
Sbjct: 365 IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
HL + LL G+ ++ + +D +P + YRR ++A+G+ + A D +++
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88
Query: 510 VDKSSEPDATAALSKLKK----QRQEVESKARKQFKGLFDKKPGEISEVGIENQ 559
+ + D TAA +L++ +Q +A FK + P E E ++Q
Sbjct: 89 L----KMDFTAA--RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 14/155 (9%)
Query: 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK 459
K+ + L ++G++ A +KYE V + P E K + H C K
Sbjct: 259 KLIESAEELIRDGRYTDATSKYESVXK----TEPSIAE--YTVRSKERICH-----CFSK 307
Query: 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 519
+ ++I C++VL P +V L R AY+ ++EA +D+E + +E D
Sbjct: 308 DEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQ---EHNENDQQ 364
Query: 520 AALSKLKKQRQEVESKARKQFKGLFDKKPGEISEV 554
K QR +S+ R +K L K+ + E+
Sbjct: 365 IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
HL + LL G+ ++ + +D +P + YRR ++A G+ + A D +++
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQ 88
Query: 510 VDKSSEPDATAALSKLKK----QRQEVESKARKQFKGLFDKKPGEISEVGIENQ 559
+ + D TAA +L++ +Q +A FK + P E E ++Q
Sbjct: 89 L----KXDFTAA--RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 15/117 (12%)
Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
DE +++R F G + A A +K+L +V V L L A
Sbjct: 141 DEXQRLRSQALNAFGSGDYTAAIAFLDKIL--------------EVCVWDAELRELR-AE 185
Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512
C +K GE RK+I + + Y+ Y LG+ E + + +K+D+
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
D+LG+G L K+ + G P+ ++ VH + L N TRV + + L
Sbjct: 6 DILGNGLLRKKTLVPGPPGSSR--PVKGQVVTVHLQTSLEN-------GTRVQEEPE-LV 55
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIEL 377
F+ G+ V + ++ V LM GE A+VT Y Y R +P A + E+ L
Sbjct: 56 FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTL 111
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
D+LG+G L K+ + G P+ ++ VH + L N TRV + + L
Sbjct: 8 DILGNGLLRKKTLVPGPPGSSR--PVKGQVVTVHLQTSLEN-------GTRVQEEPE-LV 57
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIEL 377
F+ G+ V + ++ V LM GE A+VT Y Y R +P A + E+ L
Sbjct: 58 FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTL 113
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
A++++ GNRLF K+ A A Y + + NP V + + N A C
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR----NP--------LVA---VYYTNRALCY 53
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA----QRDFEMMMKVDKS 513
LK+ + +++ C + L+ + VK + G + + ++EA QR + + + +
Sbjct: 54 LKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113
Query: 514 SEPDATAALSKLKKQR 529
D +AL KK+R
Sbjct: 114 FGDDIPSALRIAKKKR 129
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
A++++ GNRLF K+ A A Y + + NP V + + N A C
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----NP--------LVA---VYYTNRALCY 48
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA----QRDFEMMMKVDKS 513
LK+ + +++ C + L+ + VK + G + + ++EA QR + + + +
Sbjct: 49 LKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108
Query: 514 SEPDATAALSKLKKQR 529
D +AL KK+R
Sbjct: 109 FGDDIPSALRIAKKKR 124
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 393 GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL 449
G MD AE GN +K+G ++ A Y+K L + P + E
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELY----PNNAEA----------- 45
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
N+ K G+ ++IE K L+ P + + Y G AY G+++EA ++ ++
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Query: 510 VDKSSEPDATAALSKLKKQRQE 531
+ P+ A L +Q+
Sbjct: 106 L----YPNNAEAKQNLGNAKQK 123
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK 459
K+ + L ++G++ A +KYE V + P E K + H C K
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVXK----TEPSVAE--YTVRSKERICH-----CFSK 284
Query: 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
+ ++I C++VL P +V L R AY+ ++EA +D+E
Sbjct: 285 DEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYE 330
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
HL + LL G+ ++ + +D +P + YRR ++A G+ + A D ++
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIA 65
Query: 510 VDKSSEPDATAALSKLKK----QRQEVESKARKQFKGLFDKKPGEISEVGIENQ 559
+ + D TAA +L++ +Q +A FK + P E E E+Q
Sbjct: 66 L----KXDFTAA--RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113
>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
Length = 165
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 271 KRRIRDGKGEFPMDCPLHD-SLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLV 329
KR I++G+GE P D + HY+ + ++E V D+R G+P+E G+
Sbjct: 14 KRVIQEGRGELP---DFQDGTKATFHYRTLHSDDEGTVLDDSRAR--GKPMELIIGKKFK 68
Query: 330 PEGFEMCVRLMLPGEIALVTC 350
+E V M GEIA C
Sbjct: 69 LPVWETIVCTMREGEIAQFLC 89
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
N+ K G+ ++IE K L+ +P + + Y G AY G+++EA ++ +++D
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 512 KSSEPDATAALSKLKKQRQE 531
P+ A L +Q+
Sbjct: 74 ----PNNAEAKQNLGNAKQK 89
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 314 DNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY 356
D + +PLEF GEG + +GFE V M G+ V P + AY
Sbjct: 39 DREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY 81
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 21/110 (19%)
Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
M + EK + GN LFK+G + A Y++++ PQ+ VG + N A
Sbjct: 1 MSQFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQNP------VG-----YSNKA 45
Query: 455 ACLLKLGECRKSIEACNKVL--DANPAHV----KGLYRRGMAYMALGEFE 498
L+KLGE ++I+ C + L + HV K YR +A A+G +
Sbjct: 46 MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQ 95
Score = 28.9 bits (63), Expect = 8.2, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
L K G R+++ ++++ A P + G + MA + LGE+ +A + + ++ ++E
Sbjct: 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE 72
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
D+LG+G L K+ + G P+ ++ VH + L N TRV + + L
Sbjct: 38 DILGNGLLRKKTLVPGPPG--SSRPVKGQVVTVHLQTSLEN-------GTRVQEEPE-LV 87
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIEL 377
F+ G+ V + ++ V LM GE A+VT Y Y + R +P A + E+ L
Sbjct: 88 FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 144
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
N+ K G+ ++IE K L+ +P + Y G AY G+++EA ++ +++D
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
Query: 512 KSS 514
S
Sbjct: 68 PRS 70
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
D+LG+G L K+ + G P+ ++ VH + L N TRV + + L
Sbjct: 12 DILGNGLLRKKTLVPGPPGSSR--PVKGQVVTVHLQTSLEN-------GTRVQEEPE-LV 61
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGAHIQWEIEL 377
F+ G+ V + ++ V LM GE A+VT Y Y + R +P A + E+ L
Sbjct: 62 FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 118
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
+G+ +++++ G+ +I A KVL A+P +V+ L + G YM +G +A
Sbjct: 1 MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIE 60
Query: 503 DFEMMMKVDKSS 514
+ + +D +S
Sbjct: 61 SLKKFVVLDTTS 72
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDF 504
+GE K+IEA K + P ++ G+AY G +EA + F
Sbjct: 120 MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
>pdb|3THO|B Chain B, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 379
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV----DKSSEPDATAALSKLKKQR 529
+DA+P +K LY + + AL ++ R+F ++V D PD + L K
Sbjct: 259 IDASPLPLKTLYYKKIDTSALKSIRDSCRNFPGYVRVVYEEDSGILPDLMGEIDNLVK-- 316
Query: 530 QEVESKARKQFKGLFDKKPGEISE 553
+E K+R++ + + + P E E
Sbjct: 317 --IERKSRREIEEVLRESPEEFKE 338
>pdb|3UN0|B Chain B, Crystal Structure Of Mdc1 Fha Domain
pdb|3UN0|A Chain A, Crystal Structure Of Mdc1 Fha Domain
Length = 115
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 113 MHYGED------DCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGW 166
+H G++ DC VA P FP + H EIE++ + KA I+ D G
Sbjct: 26 LHLGKNVVGRMPDCSVALP--FPSISKQHAEIEILAWDKAPILRD--------CGSLNGT 75
Query: 167 ETPRAPYEVKAWISAKTGDGKLIL 190
+ R P + +S + D +LIL
Sbjct: 76 QILRPPKVLSPGVSHRLRDQELIL 99
>pdb|3UOT|A Chain A, Crystal Structure Of Mdc1 Fha Domain In Complex With A
Phosphorylated Peptide From The Mdc1 N-Terminus
pdb|3UOT|B Chain B, Crystal Structure Of Mdc1 Fha Domain In Complex With A
Phosphorylated Peptide From The Mdc1 N-Terminus
Length = 122
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 113 MHYGED------DCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGW 166
+H G++ DC VA P FP + H EIE++ + KA I+ D G
Sbjct: 33 LHLGKNVVGRXPDCSVALP--FPSISKQHAEIEILAWDKAPILRD--------CGSLNGT 82
Query: 167 ETPRAPYEVKAWISAKTGDGKLIL 190
+ R P + +S + D +LIL
Sbjct: 83 QILRPPKVLSPGVSHRLRDQELIL 106
>pdb|3UMZ|A Chain A, Crystal Structure Of The Human Mdc1 Fha Domain
pdb|3UMZ|B Chain B, Crystal Structure Of The Human Mdc1 Fha Domain
pdb|3UNM|A Chain A, Crystal Structure Of The Human Mdc1 Fha Domain
pdb|3UNM|B Chain B, Crystal Structure Of The Human Mdc1 Fha Domain
pdb|3UNN|A Chain A, Monomeric Structure Of The Human Mdc1 Fha Domain In
Complex With An Mdc1 Phospho-T4 Peptide
Length = 113
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 113 MHYGED------DCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGW 166
+H G++ DC VA P FP + H EIE++ + KA I+ D G
Sbjct: 24 LHLGKNVVGRMPDCSVALP--FPSISKQHAEIEILAWDKAPILRD--------CGSLNGT 73
Query: 167 ETPRAPYEVKAWISAKTGDGKLIL 190
+ R P + +S + D +LIL
Sbjct: 74 QILRPPKVLSPGVSHRLRDQELIL 97
>pdb|3QG5|C Chain C, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|D Chain D, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 379
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV----DKSSEPDATAALSKLKKQR 529
+DA+P +K LY + + AL + R+F ++V D PD + L K
Sbjct: 259 IDASPLPLKTLYYKKIDTSALKSIRDFCRNFPGYVRVVYEEDSGILPDLXGEIDNLVK-- 316
Query: 530 QEVESKARKQFKGLFDKKPGEISE 553
+E K+R++ + + + P E E
Sbjct: 317 --IERKSRREIEEVLRESPEEFKE 338
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
KV +ANP + +R G+A LG F+EA F++ +
Sbjct: 101 KVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIAL 137
>pdb|2OT2|A Chain A, Solution Structure Of Hypc
Length = 90
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 436 DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478
DE G+ VG+ L+H+ A ++ E R +++A + D P
Sbjct: 37 DENGQPRVGQWVLVHVGFAMSVINEAEARDTLDALQNMFDVEP 79
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 51 VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMK 110
V H T++ DG ESTR+ G P LG + + GL + + + G+ + F ++
Sbjct: 31 VLVHFTLKLDDGTTAESTRN----NGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLE 86
Query: 111 PQMHYG 116
P +G
Sbjct: 87 PDAAFG 92
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
KV +ANP + +R G+A LG F+EA F++ +
Sbjct: 101 KVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIAL 137
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
KV +ANP + +R G+A LG F+EA F++ +
Sbjct: 101 KVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,062,361
Number of Sequences: 62578
Number of extensions: 830018
Number of successful extensions: 2120
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1831
Number of HSP's gapped (non-prelim): 221
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)