Query 006908
Match_columns 626
No_of_seqs 605 out of 4885
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 16:13:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 7.4E-65 1.6E-69 511.8 38.8 362 161-557 1-366 (397)
2 KOG0543 FKBP-type peptidyl-pro 100.0 4.2E-34 9E-39 289.1 27.5 345 37-510 1-355 (397)
3 KOG0545 Aryl-hydrocarbon recep 100.0 4.7E-34 1E-38 267.6 17.3 275 267-546 10-329 (329)
4 KOG0549 FKBP-type peptidyl-pro 100.0 5.8E-28 1.3E-32 217.5 16.3 171 81-259 1-177 (188)
5 KOG0549 FKBP-type peptidyl-pro 99.9 3.8E-27 8.3E-32 212.3 15.1 174 200-383 1-178 (188)
6 KOG0544 FKBP-type peptidyl-pro 99.9 3.1E-25 6.7E-30 175.8 12.0 106 30-143 2-107 (108)
7 KOG0544 FKBP-type peptidyl-pro 99.9 1.3E-24 2.9E-29 172.2 10.8 106 268-380 2-107 (108)
8 COG0545 FkpA FKBP-type peptidy 99.9 1.4E-24 3E-29 200.6 12.3 113 20-143 92-204 (205)
9 COG0545 FkpA FKBP-type peptidy 99.9 1.6E-22 3.5E-27 187.0 12.1 104 151-257 99-204 (205)
10 PRK11570 peptidyl-prolyl cis-t 99.9 4E-21 8.7E-26 184.6 14.3 113 20-143 93-205 (206)
11 KOG0552 FKBP-type peptidyl-pro 99.8 6.1E-21 1.3E-25 181.3 12.8 120 13-143 104-225 (226)
12 TIGR03516 ppisom_GldI peptidyl 99.8 7.9E-20 1.7E-24 171.4 14.0 112 23-144 63-176 (177)
13 KOG0553 TPR repeat-containing 99.8 5.9E-20 1.3E-24 179.5 13.0 125 393-533 76-200 (304)
14 KOG0552 FKBP-type peptidyl-pro 99.8 1.9E-19 4.2E-24 171.1 12.0 107 150-257 117-225 (226)
15 PRK10902 FKBP-type peptidyl-pr 99.8 3.6E-19 7.8E-24 177.3 14.4 116 20-147 137-252 (269)
16 KOG4234 TPR repeat-containing 99.8 1.9E-18 4.2E-23 158.3 14.4 136 392-538 89-224 (271)
17 TIGR03516 ppisom_GldI peptidyl 99.8 1.7E-18 3.6E-23 162.5 13.2 107 151-258 67-176 (177)
18 PRK11570 peptidyl-prolyl cis-t 99.8 5.8E-18 1.2E-22 162.8 13.7 105 150-257 99-205 (206)
19 PF00254 FKBP_C: FKBP-type pep 99.7 1.5E-17 3.3E-22 141.0 11.9 94 41-141 1-94 (94)
20 PF00254 FKBP_C: FKBP-type pep 99.7 1.1E-16 2.4E-21 135.7 12.3 90 166-255 2-94 (94)
21 PRK10902 FKBP-type peptidyl-pr 99.7 1.3E-16 2.9E-21 159.0 13.9 107 150-259 143-250 (269)
22 KOG4648 Uncharacterized conser 99.6 1.5E-15 3.1E-20 149.8 10.2 121 391-527 90-210 (536)
23 KOG0546 HSP90 co-chaperone CPR 99.6 2.8E-15 6.1E-20 149.5 11.4 244 291-545 110-372 (372)
24 KOG0547 Translocase of outer m 99.6 7.1E-15 1.5E-19 151.2 14.3 109 387-510 104-212 (606)
25 KOG0548 Molecular co-chaperone 99.6 5.5E-15 1.2E-19 154.2 13.0 115 398-528 358-472 (539)
26 PRK15095 FKBP-type peptidyl-pr 99.6 7.6E-14 1.6E-18 128.6 15.2 83 45-143 5-87 (156)
27 KOG0550 Molecular chaperone (D 99.5 2.1E-14 4.5E-19 145.2 11.1 127 393-532 244-370 (486)
28 KOG0551 Hsp90 co-chaperone CNS 99.5 3.1E-14 6.7E-19 140.4 11.9 106 397-513 80-185 (390)
29 PLN03088 SGT1, suppressor of 99.5 2.1E-13 4.5E-18 144.0 15.7 118 398-531 2-119 (356)
30 COG1047 SlpA FKBP-type peptidy 99.5 1.4E-13 3E-18 125.8 11.8 83 45-143 3-85 (174)
31 TIGR00990 3a0801s09 mitochondr 99.5 7.1E-13 1.5E-17 151.0 18.7 135 364-515 94-228 (615)
32 KOG0548 Molecular co-chaperone 99.5 2.8E-13 6.2E-18 141.6 12.3 113 398-526 2-114 (539)
33 PRK10737 FKBP-type peptidyl-pr 99.5 7.6E-13 1.6E-17 125.1 13.4 82 45-143 3-84 (196)
34 PRK15359 type III secretion sy 99.4 2E-12 4.3E-17 118.6 15.1 114 400-529 26-139 (144)
35 PRK15095 FKBP-type peptidyl-pr 99.4 5.4E-13 1.2E-17 122.9 10.9 84 168-258 4-88 (156)
36 KOG4642 Chaperone-dependent E3 99.4 5E-13 1.1E-17 126.4 10.5 121 396-531 8-132 (284)
37 PRK10737 FKBP-type peptidyl-pr 99.4 2.1E-12 4.6E-17 122.0 10.6 83 169-258 3-85 (196)
38 COG1047 SlpA FKBP-type peptidy 99.4 2.9E-12 6.3E-17 117.2 10.4 84 168-258 2-86 (174)
39 PRK15363 pathogenicity island 99.3 6.7E-11 1.5E-15 107.3 14.5 102 397-513 34-135 (157)
40 KOG0376 Serine-threonine phosp 99.3 7.7E-12 1.7E-16 130.1 7.8 120 397-532 3-122 (476)
41 TIGR02552 LcrH_SycD type III s 99.3 1E-10 2.3E-15 105.7 14.2 113 398-526 17-129 (135)
42 PF13414 TPR_11: TPR repeat; P 99.2 8.8E-11 1.9E-15 93.1 7.8 66 447-512 3-69 (69)
43 KOG4626 O-linked N-acetylgluco 99.1 1.2E-10 2.7E-15 123.1 8.8 121 398-534 286-406 (966)
44 PRK11189 lipoprotein NlpI; Pro 99.1 1.3E-09 2.8E-14 112.5 16.0 104 396-514 62-165 (296)
45 PRK10370 formate-dependent nit 99.1 1.3E-09 2.8E-14 105.4 14.9 103 398-515 73-178 (198)
46 KOG4626 O-linked N-acetylgluco 99.1 4.1E-10 8.9E-15 119.2 11.8 119 399-533 321-439 (966)
47 TIGR02795 tol_pal_ybgF tol-pal 99.0 4.4E-09 9.5E-14 92.4 12.7 104 399-514 3-109 (119)
48 KOG1308 Hsp70-interacting prot 99.0 2.6E-10 5.6E-15 113.7 4.9 120 390-526 106-225 (377)
49 PRK02603 photosystem I assembl 99.0 6.9E-09 1.5E-13 98.3 14.2 112 392-515 29-154 (172)
50 TIGR00990 3a0801s09 mitochondr 99.0 6.3E-09 1.4E-13 118.7 16.5 115 397-527 330-444 (615)
51 PF12895 Apc3: Anaphase-promot 98.9 2.2E-09 4.8E-14 88.7 6.9 83 411-507 2-84 (84)
52 CHL00033 ycf3 photosystem I as 98.9 2.8E-08 6.1E-13 93.6 15.0 115 394-520 31-159 (168)
53 KOG0624 dsRNA-activated protei 98.9 1.2E-08 2.6E-13 101.6 12.2 105 396-515 36-140 (504)
54 KOG4555 TPR repeat-containing 98.9 5.6E-08 1.2E-12 84.0 14.5 124 392-533 37-164 (175)
55 PF13432 TPR_16: Tetratricopep 98.9 4.9E-09 1.1E-13 82.0 7.4 64 451-514 1-64 (65)
56 PRK09782 bacteriophage N4 rece 98.9 2.9E-08 6.3E-13 116.8 17.0 116 399-530 610-725 (987)
57 cd00189 TPR Tetratricopeptide 98.9 2E-08 4.2E-13 82.7 10.6 98 401-513 3-100 (100)
58 KOG1126 DNA-binding cell divis 98.8 5.3E-09 1.1E-13 112.5 8.0 102 398-514 421-522 (638)
59 PRK15359 type III secretion sy 98.8 2.9E-08 6.3E-13 91.0 11.6 99 418-535 13-111 (144)
60 KOG1173 Anaphase-promoting com 98.8 2.2E-08 4.8E-13 105.8 12.0 117 400-525 416-532 (611)
61 KOG0624 dsRNA-activated protei 98.8 1.4E-08 3E-13 101.1 9.9 131 389-531 260-390 (504)
62 PRK10370 formate-dependent nit 98.8 1.3E-07 2.7E-12 91.6 16.1 123 410-549 51-176 (198)
63 PF13414 TPR_11: TPR repeat; P 98.8 8.5E-09 1.8E-13 81.6 6.4 67 397-478 2-69 (69)
64 KOG0547 Translocase of outer m 98.8 4E-08 8.6E-13 102.1 12.5 114 395-526 323-436 (606)
65 KOG1155 Anaphase-promoting com 98.8 4.9E-08 1.1E-12 100.9 12.6 119 403-537 335-453 (559)
66 PRK15331 chaperone protein Sic 98.8 7.8E-08 1.7E-12 87.8 12.6 101 398-514 37-137 (165)
67 KOG1125 TPR repeat-containing 98.8 9.3E-09 2E-13 109.0 7.6 96 403-513 435-530 (579)
68 PRK15179 Vi polysaccharide bio 98.8 7E-08 1.5E-12 109.5 14.9 116 396-527 84-199 (694)
69 TIGR03302 OM_YfiO outer membra 98.8 1.3E-07 2.7E-12 94.3 15.2 114 397-523 32-156 (235)
70 PRK12370 invasion protein regu 98.8 8.8E-08 1.9E-12 107.7 15.3 91 409-514 315-405 (553)
71 COG5010 TadD Flp pilus assembl 98.8 1.3E-07 2.7E-12 91.9 13.6 121 399-535 101-221 (257)
72 COG3063 PilF Tfp pilus assembl 98.8 1.3E-07 2.8E-12 90.1 13.2 117 395-515 32-173 (250)
73 PRK12370 invasion protein regu 98.8 1.2E-07 2.7E-12 106.5 15.5 113 414-543 354-467 (553)
74 TIGR02521 type_IV_pilW type IV 98.7 2.8E-07 6E-12 90.1 15.8 116 400-529 101-216 (234)
75 PRK11189 lipoprotein NlpI; Pro 98.7 2.2E-07 4.8E-12 95.9 15.0 109 412-532 40-148 (296)
76 PRK09782 bacteriophage N4 rece 98.7 2E-07 4.3E-12 109.9 16.0 109 410-535 588-696 (987)
77 PF13371 TPR_9: Tetratricopept 98.7 6.7E-08 1.4E-12 77.3 8.2 69 454-523 2-70 (73)
78 TIGR02521 type_IV_pilW type IV 98.7 5E-07 1.1E-11 88.3 15.9 99 397-510 30-128 (234)
79 TIGR02552 LcrH_SycD type III s 98.7 2.6E-07 5.7E-12 83.3 11.8 101 419-535 4-104 (135)
80 PRK15174 Vi polysaccharide exp 98.6 4E-07 8.6E-12 104.3 15.5 106 404-525 218-327 (656)
81 PF13512 TPR_18: Tetratricopep 98.6 4.1E-07 8.8E-12 81.4 12.1 105 398-514 10-132 (142)
82 PRK15179 Vi polysaccharide bio 98.6 5.6E-07 1.2E-11 102.2 15.9 119 397-530 119-237 (694)
83 PRK10803 tol-pal system protei 98.6 6.8E-07 1.5E-11 90.0 14.7 110 402-524 146-259 (263)
84 KOG1155 Anaphase-promoting com 98.6 8.6E-07 1.9E-11 91.9 15.3 130 398-544 364-493 (559)
85 TIGR00115 tig trigger factor. 98.6 8.8E-08 1.9E-12 103.5 8.7 92 45-152 147-238 (408)
86 KOG1126 DNA-binding cell divis 98.6 4E-07 8.6E-12 98.3 12.9 80 450-530 526-605 (638)
87 KOG0550 Molecular chaperone (D 98.6 4.9E-07 1.1E-11 92.5 12.8 114 397-514 202-320 (486)
88 PF14559 TPR_19: Tetratricopep 98.6 1.7E-07 3.8E-12 73.7 7.4 67 457-524 1-67 (68)
89 COG3063 PilF Tfp pilus assembl 98.6 8.7E-07 1.9E-11 84.5 12.8 104 398-514 103-206 (250)
90 PRK15174 Vi polysaccharide exp 98.6 7.8E-07 1.7E-11 101.9 15.2 101 399-514 247-351 (656)
91 PLN02789 farnesyltranstransfer 98.6 1.2E-06 2.7E-11 90.8 15.1 112 399-526 72-186 (320)
92 PRK10866 outer membrane biogen 98.5 3.5E-06 7.6E-11 84.2 17.0 125 398-534 32-179 (243)
93 PRK11788 tetratricopeptide rep 98.5 1.5E-06 3.2E-11 93.3 15.3 116 401-526 144-259 (389)
94 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 3.2E-07 7E-12 96.5 9.7 65 446-510 74-141 (453)
95 PRK11447 cellulose synthase su 98.5 1.4E-06 3.1E-11 106.3 16.9 124 398-526 303-429 (1157)
96 PRK01490 tig trigger factor; P 98.5 2.3E-07 4.9E-12 101.2 8.8 90 45-150 158-247 (435)
97 PF13424 TPR_12: Tetratricopep 98.5 1.9E-07 4.2E-12 75.7 6.2 66 445-510 3-75 (78)
98 COG0544 Tig FKBP-type peptidyl 98.5 3E-07 6.6E-12 98.6 9.4 90 45-150 158-247 (441)
99 PF13525 YfiO: Outer membrane 98.5 3.4E-06 7.4E-11 82.1 15.7 125 397-533 4-144 (203)
100 KOG1310 WD40 repeat protein [G 98.5 3.6E-07 7.9E-12 95.7 9.3 124 391-530 367-493 (758)
101 PRK10049 pgaA outer membrane p 98.5 1.6E-06 3.6E-11 101.2 15.5 112 398-526 49-160 (765)
102 KOG0553 TPR repeat-containing 98.5 5.8E-07 1.3E-11 89.0 9.6 94 451-546 85-178 (304)
103 PRK11447 cellulose synthase su 98.5 2.8E-06 6.1E-11 103.8 16.9 120 399-523 386-536 (1157)
104 PF13429 TPR_15: Tetratricopep 98.5 6.3E-07 1.4E-11 91.8 9.4 120 398-533 146-265 (280)
105 PF13432 TPR_16: Tetratricopep 98.4 5.4E-07 1.2E-11 70.3 6.7 64 403-481 2-65 (65)
106 KOG0545 Aryl-hydrocarbon recep 98.4 2E-08 4.4E-13 95.7 -1.9 275 153-487 10-304 (329)
107 PLN02789 farnesyltranstransfer 98.4 3.4E-06 7.4E-11 87.5 13.8 108 408-531 47-157 (320)
108 CHL00033 ycf3 photosystem I as 98.4 4.2E-06 9.1E-11 78.8 13.1 111 403-527 4-117 (168)
109 TIGR02917 PEP_TPR_lipo putativ 98.4 3.8E-06 8.3E-11 99.3 15.8 114 396-525 123-236 (899)
110 KOG2003 TPR repeat-containing 98.4 1.9E-06 4.2E-11 88.7 11.2 113 398-526 490-602 (840)
111 PF06552 TOM20_plant: Plant sp 98.4 3.6E-06 7.7E-11 77.7 11.7 99 414-528 7-126 (186)
112 cd00189 TPR Tetratricopeptide 98.4 6.1E-06 1.3E-10 67.4 12.3 84 449-533 2-85 (100)
113 KOG1840 Kinesin light chain [C 98.4 2.9E-06 6.4E-11 92.2 12.8 144 395-546 238-396 (508)
114 TIGR03302 OM_YfiO outer membra 98.4 6.7E-06 1.5E-10 81.8 14.7 125 399-535 71-222 (235)
115 PRK15363 pathogenicity island 98.4 3.9E-06 8.4E-11 76.5 11.2 86 449-535 37-122 (157)
116 PLN03088 SGT1, suppressor of 98.4 3.5E-06 7.7E-11 89.2 12.8 84 450-534 5-88 (356)
117 PRK11788 tetratricopeptide rep 98.4 7.9E-06 1.7E-10 87.6 15.7 114 398-528 180-294 (389)
118 TIGR02917 PEP_TPR_lipo putativ 98.4 5.8E-06 1.3E-10 97.7 16.0 128 400-546 705-832 (899)
119 KOG1129 TPR repeat-containing 98.3 1.7E-06 3.6E-11 86.1 8.7 111 404-530 330-443 (478)
120 COG1729 Uncharacterized protei 98.3 6.1E-06 1.3E-10 81.3 12.4 106 398-515 141-249 (262)
121 TIGR00115 tig trigger factor. 98.3 2.6E-06 5.6E-11 92.1 10.7 86 168-259 146-231 (408)
122 PRK10049 pgaA outer membrane p 98.3 7E-06 1.5E-10 96.0 15.1 101 399-514 360-460 (765)
123 COG4235 Cytochrome c biogenesi 98.3 7.7E-06 1.7E-10 81.6 12.7 103 398-515 156-261 (287)
124 KOG4162 Predicted calmodulin-b 98.3 4.7E-06 1E-10 91.5 11.6 102 398-514 684-787 (799)
125 PF09976 TPR_21: Tetratricopep 98.3 5.2E-06 1.1E-10 76.1 10.4 97 399-508 49-145 (145)
126 PF14559 TPR_19: Tetratricopep 98.3 1.8E-06 3.9E-11 67.9 6.3 67 408-489 1-67 (68)
127 PF13424 TPR_12: Tetratricopep 98.3 2.2E-06 4.8E-11 69.4 6.9 73 396-476 3-75 (78)
128 KOG1125 TPR repeat-containing 98.3 9.2E-06 2E-10 86.7 12.8 93 448-541 431-523 (579)
129 KOG2076 RNA polymerase III tra 98.2 2.4E-05 5.1E-10 87.4 15.8 128 397-530 138-288 (895)
130 KOG2003 TPR repeat-containing 98.2 2.8E-06 6.1E-11 87.5 7.7 97 403-510 242-338 (840)
131 PF12688 TPR_5: Tetratrico pep 98.2 2E-05 4.3E-10 69.4 12.0 98 400-509 3-103 (120)
132 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.7E-05 3.6E-10 69.4 11.3 98 448-546 3-105 (119)
133 PRK02603 photosystem I assembl 98.2 1.3E-05 2.8E-10 75.8 11.1 82 446-528 34-118 (172)
134 PF13371 TPR_9: Tetratricopept 98.2 7.3E-06 1.6E-10 65.3 8.1 70 405-489 2-71 (73)
135 COG5010 TadD Flp pilus assembl 98.2 2.5E-05 5.4E-10 76.2 12.5 120 404-539 72-191 (257)
136 PRK01490 tig trigger factor; P 98.2 9.1E-06 2E-10 88.7 10.7 86 168-259 157-242 (435)
137 KOG2002 TPR-containing nuclear 98.2 2E-05 4.3E-10 88.6 13.2 119 398-529 270-389 (1018)
138 COG4785 NlpI Lipoprotein NlpI, 98.2 5.7E-06 1.2E-10 78.0 7.5 132 365-514 35-166 (297)
139 COG0544 Tig FKBP-type peptidyl 98.1 7.7E-06 1.7E-10 87.9 8.7 83 169-259 158-242 (441)
140 KOG2002 TPR-containing nuclear 98.1 3E-05 6.5E-10 87.2 12.7 132 398-535 452-583 (1018)
141 KOG1840 Kinesin light chain [C 98.1 3.5E-05 7.5E-10 84.0 12.9 106 398-510 199-312 (508)
142 PF12968 DUF3856: Domain of Un 98.1 5.7E-05 1.2E-09 64.4 11.3 107 401-510 12-129 (144)
143 KOG1128 Uncharacterized conser 98.1 1.5E-05 3.3E-10 87.1 9.9 115 400-530 487-601 (777)
144 COG2956 Predicted N-acetylgluc 98.1 4.4E-05 9.5E-10 76.3 12.1 140 389-532 101-265 (389)
145 PRK14574 hmsH outer membrane p 98.0 6.1E-05 1.3E-09 87.4 14.8 147 398-551 34-203 (822)
146 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 5.1E-05 1.1E-09 80.2 12.7 71 395-477 72-142 (453)
147 PF00515 TPR_1: Tetratricopept 98.0 7.6E-06 1.7E-10 54.7 4.2 33 481-513 1-33 (34)
148 COG4783 Putative Zn-dependent 98.0 0.0001 2.2E-09 77.7 14.4 117 400-532 308-424 (484)
149 cd05804 StaR_like StaR_like; a 98.0 0.00011 2.4E-09 77.8 14.4 111 399-513 44-180 (355)
150 PF03704 BTAD: Bacterial trans 97.9 0.0004 8.7E-09 63.5 15.7 112 398-509 6-124 (146)
151 COG4783 Putative Zn-dependent 97.9 0.00011 2.5E-09 77.3 12.9 107 403-525 345-451 (484)
152 PF13431 TPR_17: Tetratricopep 97.9 1E-05 2.2E-10 54.2 3.3 34 469-502 1-34 (34)
153 PRK10153 DNA-binding transcrip 97.9 0.00019 4.1E-09 79.4 14.5 66 448-514 421-486 (517)
154 cd05804 StaR_like StaR_like; a 97.9 0.00011 2.4E-09 77.7 12.0 99 399-512 115-217 (355)
155 PF13429 TPR_15: Tetratricopep 97.9 5.8E-05 1.3E-09 77.2 9.5 123 399-535 111-233 (280)
156 PRK11906 transcriptional regul 97.9 0.00019 4.1E-09 76.1 13.2 100 413-525 273-381 (458)
157 PF07719 TPR_2: Tetratricopept 97.9 3.2E-05 6.9E-10 51.5 4.9 34 481-514 1-34 (34)
158 PF09976 TPR_21: Tetratricopep 97.8 0.001 2.3E-08 60.8 15.9 121 394-528 7-130 (145)
159 PF14938 SNAP: Soluble NSF att 97.8 0.00031 6.6E-09 72.1 13.6 110 396-514 112-229 (282)
160 KOG2076 RNA polymerase III tra 97.8 0.00043 9.4E-09 77.6 15.4 120 400-536 209-333 (895)
161 PF15015 NYD-SP12_N: Spermatog 97.8 0.00035 7.7E-09 72.0 13.5 133 397-530 175-314 (569)
162 PRK14574 hmsH outer membrane p 97.8 0.0002 4.4E-09 83.2 13.4 107 405-528 109-215 (822)
163 PF00515 TPR_1: Tetratricopept 97.8 3.9E-05 8.5E-10 51.2 4.2 33 448-480 2-34 (34)
164 PRK14720 transcript cleavage f 97.8 0.00033 7.2E-09 80.9 14.2 111 399-527 32-161 (906)
165 TIGR00540 hemY_coli hemY prote 97.7 0.0011 2.5E-08 71.7 17.3 114 394-511 80-217 (409)
166 PF12895 Apc3: Anaphase-promot 97.7 6.7E-05 1.5E-09 61.7 6.0 76 460-537 2-79 (84)
167 KOG4151 Myosin assembly protei 97.7 9.5E-05 2.1E-09 82.1 8.8 115 389-514 44-160 (748)
168 PRK10803 tol-pal system protei 97.7 0.00031 6.8E-09 70.8 11.6 100 448-548 143-248 (263)
169 KOG1174 Anaphase-promoting com 97.7 0.00071 1.5E-08 69.8 13.6 121 398-535 334-490 (564)
170 COG4105 ComL DNA uptake lipopr 97.7 0.0014 3.1E-08 64.3 14.9 127 398-536 34-173 (254)
171 KOG1129 TPR repeat-containing 97.7 0.00011 2.5E-09 73.3 7.3 105 398-514 358-462 (478)
172 COG4700 Uncharacterized protei 97.7 0.00094 2E-08 61.9 12.7 101 400-514 91-193 (251)
173 KOG1173 Anaphase-promoting com 97.7 0.00024 5.1E-09 76.0 10.1 81 449-530 416-503 (611)
174 PRK10747 putative protoheme IX 97.6 0.0018 3.9E-08 69.8 17.2 123 394-532 80-203 (398)
175 KOG1156 N-terminal acetyltrans 97.6 0.00038 8.3E-09 75.5 11.3 117 400-532 9-125 (700)
176 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.00031 6.8E-09 74.6 10.7 87 405-506 207-293 (395)
177 KOG1130 Predicted G-alpha GTPa 97.6 0.00012 2.5E-09 75.2 6.7 112 392-512 189-306 (639)
178 PF13428 TPR_14: Tetratricopep 97.6 0.00015 3.2E-09 51.7 5.3 39 483-522 3-41 (44)
179 PF14938 SNAP: Soluble NSF att 97.6 0.00019 4.2E-09 73.5 8.4 106 395-510 32-144 (282)
180 PRK11906 transcriptional regul 97.6 0.00059 1.3E-08 72.4 11.8 88 411-513 317-404 (458)
181 PF12688 TPR_5: Tetratrico pep 97.6 0.0011 2.5E-08 58.2 11.8 65 449-513 3-70 (120)
182 PF13428 TPR_14: Tetratricopep 97.6 0.00018 4E-09 51.2 5.5 42 449-490 3-44 (44)
183 KOG4234 TPR repeat-containing 97.5 0.0015 3.3E-08 61.2 12.5 64 453-516 101-169 (271)
184 KOG1130 Predicted G-alpha GTPa 97.5 0.00058 1.3E-08 70.3 10.7 105 397-510 234-344 (639)
185 PF14853 Fis1_TPR_C: Fis1 C-te 97.5 0.00048 1E-08 50.9 7.4 48 482-530 2-49 (53)
186 COG2956 Predicted N-acetylgluc 97.5 0.002 4.4E-08 64.7 14.0 115 394-525 176-291 (389)
187 KOG4648 Uncharacterized conser 97.5 0.00021 4.7E-09 71.8 6.6 62 451-512 101-162 (536)
188 KOG1128 Uncharacterized conser 97.5 0.00045 9.8E-09 75.9 9.4 84 449-533 487-570 (777)
189 TIGR00540 hemY_coli hemY prote 97.4 0.0018 4E-08 70.1 13.9 122 397-533 262-387 (409)
190 KOG4555 TPR repeat-containing 97.4 0.0007 1.5E-08 59.1 8.2 61 453-513 49-109 (175)
191 KOG1174 Anaphase-promoting com 97.4 0.0014 3.1E-08 67.6 11.8 113 398-514 232-367 (564)
192 PF07719 TPR_2: Tetratricopept 97.4 0.00032 7E-09 46.5 4.9 33 448-480 2-34 (34)
193 COG4235 Cytochrome c biogenesi 97.4 0.0044 9.5E-08 62.2 14.6 127 412-555 136-265 (287)
194 PRK10747 putative protoheme IX 97.4 0.0047 1E-07 66.6 16.2 97 404-514 124-220 (398)
195 PF13181 TPR_8: Tetratricopept 97.4 0.00026 5.6E-09 47.1 4.1 33 481-513 1-33 (34)
196 PF13525 YfiO: Outer membrane 97.3 0.0063 1.4E-07 59.1 14.0 118 398-528 42-187 (203)
197 KOG3060 Uncharacterized conser 97.2 0.0096 2.1E-07 58.1 14.4 123 403-530 91-239 (289)
198 PRK10941 hypothetical protein; 97.2 0.0034 7.4E-08 63.3 11.8 70 445-514 179-248 (269)
199 COG1729 Uncharacterized protei 97.2 0.0026 5.6E-08 63.0 10.5 100 450-550 144-248 (262)
200 KOG4162 Predicted calmodulin-b 97.2 0.0033 7.1E-08 69.8 12.1 114 404-533 656-771 (799)
201 KOG3060 Uncharacterized conser 97.2 0.0085 1.8E-07 58.5 13.5 53 447-499 188-243 (289)
202 PF04733 Coatomer_E: Coatomer 97.2 0.0018 3.9E-08 66.5 9.6 105 407-529 140-248 (290)
203 KOG4642 Chaperone-dependent E3 97.2 0.00074 1.6E-08 65.0 6.0 71 453-524 16-86 (284)
204 PRK14720 transcript cleavage f 97.2 0.0038 8.1E-08 72.4 12.8 112 399-527 117-268 (906)
205 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.0069 1.5E-07 64.5 13.7 107 411-536 182-288 (395)
206 KOG4507 Uncharacterized conser 97.1 0.0018 3.9E-08 69.4 8.8 109 404-527 613-721 (886)
207 PF12569 NARP1: NMDA receptor- 97.1 0.0058 1.2E-07 67.5 12.9 67 448-514 195-261 (517)
208 PF04733 Coatomer_E: Coatomer 97.1 0.0043 9.2E-08 63.7 10.9 88 412-514 181-269 (290)
209 PRK10866 outer membrane biogen 97.0 0.0034 7.3E-08 62.8 9.8 69 447-515 32-103 (243)
210 KOG1127 TPR repeat-containing 97.0 0.0033 7.1E-08 71.4 10.0 76 450-526 565-640 (1238)
211 KOG4340 Uncharacterized conser 97.0 0.0025 5.3E-08 63.3 8.0 93 397-504 143-264 (459)
212 COG4785 NlpI Lipoprotein NlpI, 97.0 0.0021 4.5E-08 61.1 6.8 71 445-515 63-133 (297)
213 COG2976 Uncharacterized protei 96.9 0.012 2.6E-07 55.3 11.6 100 400-514 91-192 (207)
214 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0034 7.4E-08 46.4 6.3 40 449-488 3-42 (53)
215 PF13512 TPR_18: Tetratricopep 96.9 0.0072 1.6E-07 54.4 9.3 68 448-515 11-81 (142)
216 KOG0495 HAT repeat protein [RN 96.8 0.012 2.6E-07 64.2 12.3 124 402-530 588-733 (913)
217 KOG2796 Uncharacterized conser 96.8 0.017 3.8E-07 56.5 11.9 69 446-514 251-319 (366)
218 PF13181 TPR_8: Tetratricopept 96.8 0.0021 4.6E-08 42.6 4.2 33 448-480 2-34 (34)
219 PRK15331 chaperone protein Sic 96.8 0.022 4.8E-07 52.4 11.9 80 449-529 39-118 (165)
220 KOG1156 N-terminal acetyltrans 96.7 0.016 3.5E-07 63.3 11.9 102 398-514 41-142 (700)
221 KOG3364 Membrane protein invol 96.7 0.018 3.8E-07 50.8 9.8 83 447-530 32-119 (149)
222 KOG1127 TPR repeat-containing 96.6 0.0062 1.3E-07 69.3 8.7 95 401-510 565-659 (1238)
223 KOG3785 Uncharacterized conser 96.6 0.015 3.3E-07 59.1 10.4 62 453-514 157-218 (557)
224 KOG4814 Uncharacterized conser 96.6 0.015 3.1E-07 63.4 10.5 103 399-510 355-457 (872)
225 PF13174 TPR_6: Tetratricopept 96.6 0.0038 8.2E-08 40.9 4.0 31 483-513 2-32 (33)
226 KOG1586 Protein required for f 96.6 0.054 1.2E-06 52.3 13.1 104 402-514 117-228 (288)
227 PF09986 DUF2225: Uncharacteri 96.5 0.059 1.3E-06 52.7 13.7 101 405-513 84-197 (214)
228 KOG0551 Hsp90 co-chaperone CNS 96.5 0.02 4.3E-07 57.9 10.4 68 449-516 83-154 (390)
229 KOG1941 Acetylcholine receptor 96.5 0.018 3.9E-07 58.8 9.8 117 397-513 5-154 (518)
230 smart00028 TPR Tetratricopepti 96.4 0.005 1.1E-07 39.1 3.9 32 482-513 2-33 (34)
231 KOG3785 Uncharacterized conser 96.4 0.015 3.2E-07 59.2 8.7 87 407-507 31-117 (557)
232 PF13176 TPR_7: Tetratricopept 96.3 0.0065 1.4E-07 41.0 4.1 28 483-510 1-28 (36)
233 KOG1941 Acetylcholine receptor 96.3 0.03 6.6E-07 57.2 10.3 99 403-510 127-235 (518)
234 PF04781 DUF627: Protein of un 96.3 0.025 5.5E-07 48.3 8.3 103 404-511 2-108 (111)
235 PF13431 TPR_17: Tetratricopep 96.3 0.0041 9E-08 41.5 2.8 34 420-468 1-34 (34)
236 KOG2376 Signal recognition par 96.2 0.059 1.3E-06 58.5 12.6 112 400-515 112-258 (652)
237 KOG2376 Signal recognition par 96.2 0.075 1.6E-06 57.7 13.3 120 399-525 13-155 (652)
238 KOG0376 Serine-threonine phosp 96.2 0.0063 1.4E-07 64.5 5.0 65 450-514 7-71 (476)
239 COG4976 Predicted methyltransf 96.1 0.0087 1.9E-07 57.5 5.3 60 456-515 4-63 (287)
240 KOG0495 HAT repeat protein [RN 96.0 0.061 1.3E-06 59.0 11.6 91 409-514 662-752 (913)
241 PF13176 TPR_7: Tetratricopept 96.0 0.012 2.6E-07 39.7 4.1 28 449-476 1-28 (36)
242 PF13174 TPR_6: Tetratricopept 95.9 0.012 2.7E-07 38.3 3.9 32 449-480 2-33 (33)
243 PF10300 DUF3808: Protein of u 95.9 0.042 9.1E-07 60.4 10.3 100 400-511 269-377 (468)
244 COG3071 HemY Uncharacterized e 95.9 0.2 4.4E-06 52.1 14.4 123 393-531 79-202 (400)
245 smart00028 TPR Tetratricopepti 95.8 0.015 3.2E-07 36.7 4.0 33 448-480 2-34 (34)
246 KOG3824 Huntingtin interacting 95.8 0.037 8E-07 55.3 8.3 69 447-515 116-184 (472)
247 PF06552 TOM20_plant: Plant sp 95.7 0.076 1.7E-06 49.5 9.3 64 463-527 7-80 (186)
248 KOG2396 HAT (Half-A-TPR) repea 95.6 0.29 6.4E-06 52.4 14.1 110 414-539 87-197 (568)
249 COG0457 NrfG FOG: TPR repeat [ 95.5 0.19 4.1E-06 47.3 12.2 95 407-513 139-234 (291)
250 KOG3824 Huntingtin interacting 95.4 0.09 1.9E-06 52.7 9.1 84 395-493 113-196 (472)
251 PF12569 NARP1: NMDA receptor- 95.3 0.12 2.7E-06 57.2 11.1 77 449-526 6-82 (517)
252 PF08631 SPO22: Meiosis protei 95.3 0.37 8.1E-06 49.2 14.1 122 388-511 25-151 (278)
253 COG4105 ComL DNA uptake lipopr 95.3 0.11 2.4E-06 51.2 9.5 68 447-514 34-104 (254)
254 COG3071 HemY Uncharacterized e 95.3 0.15 3.2E-06 53.1 10.8 110 398-527 263-372 (400)
255 KOG1308 Hsp70-interacting prot 95.2 0.0063 1.4E-07 61.8 0.7 59 457-515 124-182 (377)
256 PRK10153 DNA-binding transcrip 95.2 0.21 4.5E-06 55.6 12.6 120 398-534 339-471 (517)
257 COG0457 NrfG FOG: TPR repeat [ 95.2 0.2 4.4E-06 47.1 11.2 103 396-513 93-199 (291)
258 PF04184 ST7: ST7 protein; In 95.1 0.57 1.2E-05 50.4 14.8 125 386-510 179-324 (539)
259 COG2912 Uncharacterized conser 95.0 0.17 3.7E-06 50.4 10.0 71 444-514 178-248 (269)
260 PRK04841 transcriptional regul 95.0 0.14 3E-06 61.4 11.4 101 402-511 495-603 (903)
261 KOG2471 TPR repeat-containing 94.9 0.051 1.1E-06 57.6 6.3 120 398-524 240-377 (696)
262 PF14561 TPR_20: Tetratricopep 94.9 0.15 3.3E-06 42.4 8.0 65 466-530 7-72 (90)
263 PF10602 RPN7: 26S proteasome 94.8 0.31 6.6E-06 46.2 10.9 102 397-510 35-142 (177)
264 COG3118 Thioredoxin domain-con 94.8 0.84 1.8E-05 46.0 14.1 98 400-512 136-267 (304)
265 PRK04841 transcriptional regul 94.8 0.2 4.3E-06 60.1 11.9 104 401-511 534-642 (903)
266 KOG4340 Uncharacterized conser 94.7 0.27 5.7E-06 49.3 10.2 84 409-507 21-104 (459)
267 KOG2053 Mitochondrial inherita 94.6 0.59 1.3E-05 53.4 14.0 90 408-513 19-109 (932)
268 PLN03081 pentatricopeptide (PP 94.6 0.21 4.5E-06 58.2 11.2 63 448-510 495-557 (697)
269 KOG3081 Vesicle coat complex C 94.4 0.45 9.7E-06 47.1 11.0 72 453-525 175-250 (299)
270 PF13374 TPR_10: Tetratricopep 94.4 0.082 1.8E-06 36.4 4.5 29 448-476 3-31 (42)
271 KOG1585 Protein required for f 94.3 0.38 8.2E-06 47.0 10.0 99 404-511 116-220 (308)
272 KOG4507 Uncharacterized conser 94.2 0.15 3.3E-06 55.2 7.8 101 403-516 217-318 (886)
273 PF10579 Rapsyn_N: Rapsyn N-te 93.9 0.35 7.6E-06 38.7 7.4 68 397-476 5-72 (80)
274 PLN03218 maturation of RBCL 1; 93.8 1.2 2.7E-05 53.8 15.4 62 449-510 581-643 (1060)
275 KOG2471 TPR repeat-containing 93.7 0.18 3.9E-06 53.6 7.1 98 395-494 280-382 (696)
276 KOG1915 Cell cycle control pro 93.5 1.2 2.5E-05 47.6 12.6 109 401-526 76-184 (677)
277 PF10952 DUF2753: Protein of u 93.4 0.33 7.1E-06 42.1 7.0 117 400-524 3-124 (140)
278 PF13374 TPR_10: Tetratricopep 93.4 0.16 3.5E-06 34.8 4.5 30 481-510 2-31 (42)
279 PLN03218 maturation of RBCL 1; 93.4 1.6 3.4E-05 53.0 15.4 61 448-509 685-747 (1060)
280 PF05843 Suf: Suppressor of fo 93.3 0.9 1.9E-05 46.4 11.6 94 406-514 9-103 (280)
281 PLN03077 Protein ECB2; Provisi 93.1 1.3 2.7E-05 53.0 14.2 61 449-509 659-719 (857)
282 COG4700 Uncharacterized protei 93.1 0.95 2.1E-05 42.5 10.0 67 448-514 90-157 (251)
283 PF07079 DUF1347: Protein of u 93.0 2.5 5.3E-05 45.1 14.1 72 454-529 469-543 (549)
284 KOG1586 Protein required for f 92.8 2.2 4.7E-05 41.6 12.3 108 394-511 29-144 (288)
285 PF06957 COPI_C: Coatomer (COP 92.4 0.47 1E-05 50.7 8.2 119 396-514 202-333 (422)
286 KOG3081 Vesicle coat complex C 92.3 1.8 4E-05 43.0 11.4 88 412-514 187-275 (299)
287 PF10516 SHNi-TPR: SHNi-TPR; 92.3 0.22 4.7E-06 34.0 3.6 29 482-510 2-30 (38)
288 KOG2610 Uncharacterized conser 92.2 2.4 5.2E-05 43.4 12.3 104 399-506 104-234 (491)
289 PF02259 FAT: FAT domain; Int 92.1 1.6 3.5E-05 45.8 12.0 113 401-513 187-341 (352)
290 PF04184 ST7: ST7 protein; In 92.1 1 2.2E-05 48.6 10.1 102 400-514 261-379 (539)
291 COG3947 Response regulator con 91.9 0.83 1.8E-05 45.8 8.6 71 437-507 269-339 (361)
292 PF08631 SPO22: Meiosis protei 91.8 4.6 0.0001 41.2 14.6 88 408-502 3-105 (278)
293 KOG0686 COP9 signalosome, subu 91.8 0.65 1.4E-05 48.6 8.0 97 400-508 152-256 (466)
294 COG3629 DnrI DNA-binding trans 91.8 2.1 4.5E-05 43.4 11.5 71 440-510 146-216 (280)
295 PF03704 BTAD: Bacterial trans 91.8 3.2 7E-05 37.5 12.1 73 453-526 12-106 (146)
296 PF12862 Apc5: Anaphase-promot 91.4 1.9 4.2E-05 36.0 9.3 55 457-511 8-71 (94)
297 PLN03081 pentatricopeptide (PP 91.1 2 4.3E-05 50.0 12.4 77 449-528 464-540 (697)
298 KOG1915 Cell cycle control pro 91.0 3.2 7E-05 44.4 12.2 138 410-548 378-538 (677)
299 PRK10941 hypothetical protein; 91.0 1.6 3.5E-05 44.1 9.9 79 398-491 181-259 (269)
300 COG2976 Uncharacterized protei 91.0 2.1 4.6E-05 40.6 9.9 105 403-507 36-152 (207)
301 PLN03077 Protein ECB2; Provisi 90.6 2.4 5.1E-05 50.7 12.6 123 400-527 556-702 (857)
302 PF12862 Apc5: Anaphase-promot 90.5 1.1 2.5E-05 37.4 7.1 64 408-477 8-71 (94)
303 PHA02537 M terminase endonucle 90.3 3.4 7.5E-05 40.6 11.1 119 408-531 93-226 (230)
304 PF04910 Tcf25: Transcriptiona 89.9 2.8 6E-05 44.5 11.1 103 411-516 7-138 (360)
305 COG4976 Predicted methyltransf 89.5 0.63 1.4E-05 45.1 5.2 60 406-480 3-62 (287)
306 KOG4814 Uncharacterized conser 89.5 3.1 6.8E-05 46.0 11.0 68 447-514 354-427 (872)
307 KOG1585 Protein required for f 89.3 5.4 0.00012 39.2 11.3 102 400-510 33-139 (308)
308 KOG2610 Uncharacterized conser 89.2 1.6 3.4E-05 44.7 7.9 82 412-508 189-274 (491)
309 PF10255 Paf67: RNA polymerase 88.5 1.5 3.3E-05 46.8 7.8 70 444-513 161-231 (404)
310 KOG3364 Membrane protein invol 88.3 2.3 5E-05 37.9 7.4 39 449-487 73-111 (149)
311 KOG2300 Uncharacterized conser 88.3 6 0.00013 42.6 11.7 99 397-511 366-475 (629)
312 PF09613 HrpB1_HrpK: Bacterial 88.2 4.5 9.8E-05 37.3 9.6 82 447-529 10-91 (160)
313 PF10300 DUF3808: Protein of u 88.2 5.8 0.00012 43.8 12.4 67 447-513 267-337 (468)
314 PF09986 DUF2225: Uncharacteri 88.1 3.9 8.4E-05 39.9 9.9 88 395-491 122-210 (214)
315 PF07721 TPR_4: Tetratricopept 87.6 0.75 1.6E-05 28.3 3.0 24 482-505 2-25 (26)
316 PF02259 FAT: FAT domain; Int 87.3 12 0.00027 38.9 14.1 119 397-527 145-303 (352)
317 KOG2796 Uncharacterized conser 87.1 7.1 0.00015 38.8 10.7 110 403-527 182-297 (366)
318 TIGR03504 FimV_Cterm FimV C-te 86.6 1 2.2E-05 31.9 3.6 25 485-509 3-27 (44)
319 COG5191 Uncharacterized conser 86.5 1.6 3.4E-05 44.2 6.0 78 448-526 108-186 (435)
320 PF12968 DUF3856: Domain of Un 86.5 4.1 8.9E-05 35.4 7.7 73 400-476 57-129 (144)
321 PF07720 TPR_3: Tetratricopept 86.5 2.1 4.6E-05 28.8 4.8 32 482-513 2-35 (36)
322 KOG1070 rRNA processing protei 86.3 7.9 0.00017 46.8 12.4 76 447-523 1564-1641(1710)
323 KOG0292 Vesicle coat complex C 86.3 3.7 8E-05 47.1 9.4 120 395-514 988-1117(1202)
324 PF09613 HrpB1_HrpK: Bacterial 86.2 28 0.00061 32.2 14.6 111 398-526 10-120 (160)
325 cd02683 MIT_1 MIT: domain cont 86.2 2.5 5.5E-05 33.9 6.1 35 396-430 4-38 (77)
326 cd02682 MIT_AAA_Arch MIT: doma 86.0 2.1 4.6E-05 34.1 5.4 37 395-431 3-39 (75)
327 KOG2422 Uncharacterized conser 86.0 14 0.0003 40.8 13.1 113 328-479 256-374 (665)
328 KOG1070 rRNA processing protei 85.8 10 0.00022 46.0 12.9 67 448-514 1531-1597(1710)
329 COG3898 Uncharacterized membra 85.7 8.9 0.00019 40.3 11.1 108 408-525 198-305 (531)
330 cd02684 MIT_2 MIT: domain cont 85.7 2.1 4.5E-05 34.2 5.4 36 395-430 3-38 (75)
331 cd02677 MIT_SNX15 MIT: domain 85.5 2.4 5.3E-05 33.8 5.6 36 395-430 3-38 (75)
332 PF10345 Cohesin_load: Cohesin 84.7 11 0.00024 43.2 12.7 133 389-523 294-454 (608)
333 cd02681 MIT_calpain7_1 MIT: do 84.4 4.1 8.8E-05 32.6 6.4 35 396-430 4-38 (76)
334 COG3914 Spy Predicted O-linked 83.9 12 0.00026 41.3 11.7 103 407-525 76-185 (620)
335 KOG1550 Extracellular protein 83.5 8.5 0.00018 43.4 11.1 91 403-512 293-395 (552)
336 cd02656 MIT MIT: domain contai 83.0 3.7 8E-05 32.6 5.8 36 395-430 3-38 (75)
337 PF10255 Paf67: RNA polymerase 82.7 2 4.3E-05 45.9 5.2 59 450-509 125-192 (404)
338 cd02678 MIT_VPS4 MIT: domain c 82.7 3.7 8E-05 32.7 5.7 37 394-430 2-38 (75)
339 KOG1463 26S proteasome regulat 82.6 14 0.00031 38.0 10.9 119 398-529 209-331 (411)
340 PF10516 SHNi-TPR: SHNi-TPR; 82.5 2.6 5.6E-05 28.8 3.9 30 448-477 2-31 (38)
341 PF11817 Foie-gras_1: Foie gra 82.2 5 0.00011 40.2 7.7 65 401-474 181-245 (247)
342 PF14561 TPR_20: Tetratricopep 82.0 13 0.00027 30.9 8.8 48 418-480 8-55 (90)
343 KOG2114 Vacuolar assembly/sort 81.5 9.8 0.00021 43.7 10.2 33 397-429 367-399 (933)
344 PRK13184 pknD serine/threonine 81.3 13 0.00028 44.3 11.7 104 404-521 481-591 (932)
345 PF09670 Cas_Cas02710: CRISPR- 80.6 17 0.00036 38.9 11.5 66 397-475 130-197 (379)
346 PF04212 MIT: MIT (microtubule 80.6 4 8.6E-05 31.8 5.1 35 395-429 2-36 (69)
347 KOG2300 Uncharacterized conser 80.5 15 0.00033 39.6 10.6 100 397-504 45-150 (629)
348 COG3118 Thioredoxin domain-con 80.4 16 0.00035 37.1 10.4 54 453-506 140-193 (304)
349 KOG1839 Uncharacterized protei 80.2 4.5 9.7E-05 48.6 7.4 107 398-511 973-1087(1236)
350 PF10373 EST1_DNA_bind: Est1 D 80.2 6.5 0.00014 39.7 8.0 62 466-528 1-62 (278)
351 COG2909 MalT ATP-dependent tra 79.8 40 0.00087 39.3 14.4 116 390-511 407-527 (894)
352 KOG0985 Vesicle coat protein c 79.7 12 0.00027 43.8 10.2 102 400-530 1196-1327(1666)
353 PF04910 Tcf25: Transcriptiona 79.6 14 0.0003 39.2 10.3 78 398-479 40-135 (360)
354 smart00745 MIT Microtubule Int 79.4 8.3 0.00018 30.7 6.7 37 394-430 4-40 (77)
355 KOG2422 Uncharacterized conser 79.0 22 0.00047 39.4 11.4 109 402-513 239-374 (665)
356 COG3898 Uncharacterized membra 78.9 22 0.00048 37.5 11.0 93 402-509 124-216 (531)
357 KOG2053 Mitochondrial inherita 78.5 21 0.00046 41.4 11.6 97 403-515 48-144 (932)
358 KOG1839 Uncharacterized protei 78.4 6.9 0.00015 47.0 8.2 107 396-510 930-1044(1236)
359 PF10602 RPN7: 26S proteasome 78.3 30 0.00066 32.6 11.2 64 447-510 36-102 (177)
360 PF07721 TPR_4: Tetratricopept 77.3 3.5 7.6E-05 25.3 3.1 23 449-471 3-25 (26)
361 COG0790 FOG: TPR repeat, SEL1 76.8 52 0.0011 33.4 13.6 97 400-512 111-222 (292)
362 TIGR02561 HrpB1_HrpK type III 75.7 22 0.00047 32.4 8.8 78 449-527 12-89 (153)
363 PF05843 Suf: Suppressor of fo 74.6 21 0.00046 36.3 9.9 66 449-514 3-69 (280)
364 cd02680 MIT_calpain7_2 MIT: do 73.4 4.3 9.4E-05 32.3 3.4 36 395-430 3-38 (75)
365 PF10579 Rapsyn_N: Rapsyn N-te 72.9 28 0.0006 28.1 7.7 57 453-509 12-71 (80)
366 KOG1550 Extracellular protein 72.5 35 0.00075 38.6 11.7 89 411-511 262-358 (552)
367 PF14863 Alkyl_sulf_dimr: Alky 72.3 9.7 0.00021 34.5 5.8 48 450-497 73-120 (141)
368 PF10345 Cohesin_load: Cohesin 71.7 87 0.0019 35.8 14.9 106 396-511 57-169 (608)
369 PF13281 DUF4071: Domain of un 71.4 23 0.0005 37.6 9.2 66 449-514 181-259 (374)
370 PF07720 TPR_3: Tetratricopept 71.1 11 0.00024 25.3 4.5 32 449-480 3-36 (36)
371 PF04781 DUF627: Protein of un 70.8 65 0.0014 27.8 10.1 62 453-514 2-77 (111)
372 PF15015 NYD-SP12_N: Spermatog 70.5 28 0.0006 37.1 9.2 84 454-538 183-284 (569)
373 TIGR03504 FimV_Cterm FimV C-te 70.2 7.4 0.00016 27.5 3.6 25 451-475 3-27 (44)
374 TIGR02710 CRISPR-associated pr 70.1 43 0.00094 35.6 10.9 63 399-471 131-195 (380)
375 KOG1310 WD40 repeat protein [G 70.1 15 0.00032 40.1 7.4 72 460-532 387-461 (758)
376 PF10373 EST1_DNA_bind: Est1 D 69.9 14 0.00031 37.1 7.4 62 417-493 1-62 (278)
377 PF11817 Foie-gras_1: Foie gra 69.6 35 0.00076 34.0 9.9 86 414-508 154-245 (247)
378 KOG2041 WD40 repeat protein [G 69.4 13 0.00027 41.9 6.8 29 478-506 849-877 (1189)
379 COG4455 ImpE Protein of avirul 69.4 42 0.00091 32.7 9.5 63 455-517 9-71 (273)
380 COG3914 Spy Predicted O-linked 69.2 48 0.001 36.9 11.1 69 453-522 73-142 (620)
381 KOG0985 Vesicle coat protein c 67.3 62 0.0013 38.4 11.8 101 404-510 1054-1162(1666)
382 COG2912 Uncharacterized conser 67.3 26 0.00056 35.3 8.1 74 403-491 186-259 (269)
383 cd02679 MIT_spastin MIT: domai 66.8 38 0.00082 27.3 7.5 67 394-460 4-76 (79)
384 PF14863 Alkyl_sulf_dimr: Alky 66.7 49 0.0011 30.0 9.1 52 479-531 68-119 (141)
385 KOG2047 mRNA splicing factor [ 66.7 43 0.00093 37.7 10.2 122 392-513 419-582 (835)
386 cd02682 MIT_AAA_Arch MIT: doma 66.5 58 0.0013 26.0 8.4 15 500-514 32-46 (75)
387 KOG2561 Adaptor protein NUB1, 66.0 81 0.0018 33.9 11.6 115 392-510 157-296 (568)
388 PF08424 NRDE-2: NRDE-2, neces 64.1 1.3E+02 0.0029 31.2 13.3 53 463-515 47-99 (321)
389 KOG2047 mRNA splicing factor [ 63.9 2.1E+02 0.0046 32.5 14.7 65 401-476 390-454 (835)
390 COG0790 FOG: TPR repeat, SEL1 63.8 1.1E+02 0.0024 30.9 12.6 81 414-514 171-270 (292)
391 PF13281 DUF4071: Domain of un 63.8 76 0.0017 33.7 11.2 102 447-548 141-257 (374)
392 KOG0530 Protein farnesyltransf 63.7 1.3E+02 0.0028 30.3 11.8 112 390-523 41-154 (318)
393 COG4649 Uncharacterized protei 62.1 68 0.0015 30.2 9.1 59 447-505 94-156 (221)
394 PF09205 DUF1955: Domain of un 60.6 65 0.0014 28.9 8.3 62 450-511 88-150 (161)
395 KOG3617 WD40 and TPR repeat-co 60.1 29 0.00063 40.0 7.6 48 457-507 836-884 (1416)
396 PF00244 14-3-3: 14-3-3 protei 58.7 29 0.00063 34.4 6.8 53 414-474 142-196 (236)
397 KOG2581 26S proteasome regulat 57.6 33 0.00072 36.4 7.0 68 447-514 209-280 (493)
398 COG2909 MalT ATP-dependent tra 57.0 1.3E+02 0.0028 35.3 12.2 88 398-495 458-551 (894)
399 KOG3617 WD40 and TPR repeat-co 57.0 16 0.00036 41.9 5.0 31 479-509 965-995 (1416)
400 KOG0739 AAA+-type ATPase [Post 56.0 49 0.0011 33.8 7.7 36 394-429 6-41 (439)
401 cd02683 MIT_1 MIT: domain cont 55.3 1.1E+02 0.0023 24.5 8.9 14 500-513 32-45 (77)
402 KOG0530 Protein farnesyltransf 53.8 1E+02 0.0022 31.1 9.3 69 461-530 57-126 (318)
403 KOG1497 COP9 signalosome, subu 53.1 2.1E+02 0.0045 29.7 11.5 88 444-533 100-197 (399)
404 PF04212 MIT: MIT (microtubule 53.1 1E+02 0.0022 23.8 7.8 21 489-509 13-33 (69)
405 KOG1464 COP9 signalosome, subu 52.0 39 0.00085 33.9 6.2 51 459-509 39-93 (440)
406 PF11207 DUF2989: Protein of u 51.9 1E+02 0.0022 29.7 8.9 52 449-501 143-198 (203)
407 COG5159 RPN6 26S proteasome re 51.3 1.4E+02 0.003 30.4 9.9 119 398-527 206-327 (421)
408 KOG3783 Uncharacterized conser 51.3 1.1E+02 0.0024 33.8 10.0 77 401-491 270-348 (546)
409 PF11846 DUF3366: Domain of un 50.5 53 0.0012 31.2 7.0 51 463-514 127-177 (193)
410 PF08238 Sel1: Sel1 repeat; I 50.4 33 0.00072 22.6 4.1 31 481-511 1-38 (39)
411 COG5091 SGT1 Suppressor of G2 48.7 59 0.0013 32.5 6.8 102 406-512 3-110 (368)
412 PF08424 NRDE-2: NRDE-2, neces 48.3 2E+02 0.0043 29.9 11.4 83 413-510 46-131 (321)
413 PRK15180 Vi polysaccharide bio 48.2 98 0.0021 33.7 8.8 90 406-510 297-386 (831)
414 COG4941 Predicted RNA polymera 48.2 1.5E+02 0.0032 30.9 9.7 66 449-514 331-398 (415)
415 KOG0529 Protein geranylgeranyl 47.8 2.9E+02 0.0063 29.6 12.1 71 457-528 85-157 (421)
416 PF03097 BRO1: BRO1-like domai 47.6 3.2E+02 0.0069 28.9 13.2 30 481-510 239-268 (377)
417 KOG4563 Cell cycle-regulated h 46.2 38 0.00082 35.4 5.3 39 393-431 36-74 (400)
418 PF11207 DUF2989: Protein of u 46.1 44 0.00095 32.1 5.4 58 398-467 141-198 (203)
419 smart00671 SEL1 Sel1-like repe 46.1 42 0.00091 21.6 4.0 29 482-510 2-34 (36)
420 PF01239 PPTA: Protein prenylt 45.9 61 0.0013 20.5 4.6 28 466-493 2-29 (31)
421 PF15469 Sec5: Exocyst complex 44.9 1.1E+02 0.0024 28.7 8.2 23 407-429 95-117 (182)
422 KOG4459 Membrane-associated pr 44.8 44 0.00095 36.0 5.7 113 401-525 34-176 (471)
423 cd09241 BRO1_ScRim20-like Prot 44.7 2E+02 0.0044 30.4 10.9 30 481-510 237-266 (355)
424 PF04053 Coatomer_WDAD: Coatom 44.3 64 0.0014 35.3 7.2 24 449-472 349-372 (443)
425 cd02679 MIT_spastin MIT: domai 44.2 1.7E+02 0.0037 23.6 8.1 33 463-510 5-37 (79)
426 KOG0889 Histone acetyltransfer 43.7 1.7E+02 0.0036 39.8 11.3 84 445-530 2810-2901(3550)
427 PF04053 Coatomer_WDAD: Coatom 42.9 33 0.00072 37.5 4.7 47 458-509 329-375 (443)
428 KOG0529 Protein geranylgeranyl 42.9 2.8E+02 0.0061 29.7 11.1 101 408-524 85-191 (421)
429 PF12854 PPR_1: PPR repeat 42.1 63 0.0014 21.1 4.3 27 480-506 6-32 (34)
430 COG3629 DnrI DNA-binding trans 41.8 96 0.0021 31.6 7.4 62 398-474 153-214 (280)
431 KOG3783 Uncharacterized conser 41.6 2.3E+02 0.0051 31.4 10.6 66 449-514 451-524 (546)
432 PF10952 DUF2753: Protein of u 40.5 1.3E+02 0.0028 26.6 6.8 61 450-510 4-79 (140)
433 cd02680 MIT_calpain7_2 MIT: do 40.4 1.9E+02 0.0041 23.1 7.9 19 492-510 17-35 (75)
434 cd02656 MIT MIT: domain contai 40.0 1.7E+02 0.0037 22.9 7.4 15 495-509 20-34 (75)
435 TIGR02561 HrpB1_HrpK type III 39.5 3E+02 0.0066 25.2 12.7 101 407-525 19-119 (153)
436 KOG0276 Vesicle coat complex C 39.5 73 0.0016 35.6 6.4 52 454-510 644-695 (794)
437 smart00386 HAT HAT (Half-A-TPR 39.0 73 0.0016 19.5 4.3 19 496-514 2-20 (33)
438 KOG0499 Cyclic nucleotide-gate 39.0 1.2E+02 0.0025 34.0 7.8 53 462-514 626-685 (815)
439 PF10938 YfdX: YfdX protein; 38.9 2.1E+02 0.0046 26.3 8.7 108 401-509 5-145 (155)
440 cd09240 BRO1_Alix Protein-inte 38.7 4.9E+02 0.011 27.4 12.9 30 481-510 255-284 (346)
441 PF08969 USP8_dimer: USP8 dime 38.6 43 0.00094 29.0 3.9 42 388-429 28-69 (115)
442 PRK15180 Vi polysaccharide bio 38.2 55 0.0012 35.5 5.2 62 453-514 363-424 (831)
443 cd09034 BRO1_Alix_like Protein 38.1 98 0.0021 32.5 7.3 30 481-510 251-280 (345)
444 PF01535 PPR: PPR repeat; Int 37.8 50 0.0011 20.2 3.2 25 450-474 3-27 (31)
445 PF12739 TRAPPC-Trs85: ER-Golg 37.3 2.3E+02 0.005 30.7 10.1 102 400-510 210-329 (414)
446 smart00745 MIT Microtubule Int 37.2 2E+02 0.0044 22.5 8.8 13 501-513 35-47 (77)
447 COG1747 Uncharacterized N-term 36.5 4.4E+02 0.0096 29.2 11.5 55 459-513 217-291 (711)
448 cd02678 MIT_VPS4 MIT: domain c 35.8 2.2E+02 0.0047 22.4 9.0 21 489-509 14-34 (75)
449 KOG3616 Selective LIM binding 35.7 1.3E+02 0.0028 34.6 7.6 103 395-507 658-791 (1636)
450 cd02681 MIT_calpain7_1 MIT: do 35.5 72 0.0016 25.5 4.4 21 490-510 15-35 (76)
451 cd00632 Prefoldin_beta Prefold 35.2 2.8E+02 0.006 23.5 9.2 56 449-509 18-73 (105)
452 KOG0546 HSP90 co-chaperone CPR 35.1 32 0.00069 35.9 2.8 74 404-492 281-354 (372)
453 PF07219 HemY_N: HemY protein 34.9 2.2E+02 0.0047 24.3 7.7 45 451-495 63-107 (108)
454 COG5159 RPN6 26S proteasome re 34.6 5.2E+02 0.011 26.5 12.1 64 402-472 7-70 (421)
455 PF13812 PPR_3: Pentatricopept 33.7 1E+02 0.0022 19.3 4.3 27 449-475 3-29 (34)
456 KOG3807 Predicted membrane pro 33.2 5.5E+02 0.012 26.8 11.1 59 449-507 277-337 (556)
457 KOG0880 Peptidyl-prolyl cis-tr 33.1 54 0.0012 31.2 3.7 40 292-337 135-177 (217)
458 COG4649 Uncharacterized protei 32.8 4.4E+02 0.0094 25.0 12.2 97 401-509 97-195 (221)
459 KOG1464 COP9 signalosome, subu 32.8 1.3E+02 0.0028 30.3 6.5 105 403-510 150-260 (440)
460 smart00101 14_3_3 14-3-3 homol 32.7 1.4E+02 0.003 29.9 6.8 53 414-474 144-198 (244)
461 cd09239 BRO1_HD-PTP_like Prote 32.4 4.2E+02 0.0092 28.1 10.9 28 482-509 253-280 (361)
462 KOG4563 Cell cycle-regulated h 31.6 76 0.0016 33.3 4.8 55 450-504 44-106 (400)
463 TIGR03362 VI_chp_7 type VI sec 31.6 5.5E+02 0.012 26.5 11.2 105 399-505 50-156 (301)
464 PF10938 YfdX: YfdX protein; 31.2 1.9E+02 0.0041 26.6 7.0 71 395-475 72-145 (155)
465 COG3947 Response regulator con 30.9 1.7E+02 0.0037 29.9 7.0 47 481-528 279-325 (361)
466 cd00280 TRFH Telomeric Repeat 30.7 1.9E+02 0.0041 27.5 6.9 39 452-491 116-154 (200)
467 cd09243 BRO1_Brox_like Protein 30.7 2.1E+02 0.0045 30.3 8.2 28 482-509 249-276 (353)
468 KOG0890 Protein kinase of the 30.2 1.8E+02 0.0039 38.1 8.5 102 404-526 1389-1494(2382)
469 PRK13184 pknD serine/threonine 29.7 3.9E+02 0.0084 32.3 10.9 64 449-514 554-624 (932)
470 TIGR00756 PPR pentatricopeptid 29.5 1.1E+02 0.0024 18.9 4.0 25 450-474 3-27 (35)
471 COG4455 ImpE Protein of avirul 29.3 5.7E+02 0.012 25.2 12.2 94 405-513 8-118 (273)
472 KOG0739 AAA+-type ATPase [Post 28.8 4.2E+02 0.0091 27.4 9.3 44 463-514 7-50 (439)
473 KOG2709 Uncharacterized conser 28.5 1.9E+02 0.0042 30.9 7.2 27 449-475 24-50 (560)
474 cd02677 MIT_SNX15 MIT: domain 27.5 3.2E+02 0.0069 21.7 7.8 18 493-510 18-35 (75)
475 cd02684 MIT_2 MIT: domain cont 27.1 3.2E+02 0.0069 21.6 8.0 18 492-509 17-34 (75)
476 PF09797 NatB_MDM20: N-acetylt 26.8 2.4E+02 0.0052 29.8 8.1 46 461-506 197-242 (365)
477 cd09247 BRO1_Alix_like_2 Prote 26.4 3.8E+02 0.0081 28.2 9.3 30 481-510 253-282 (346)
478 KOG2396 HAT (Half-A-TPR) repea 26.3 4E+02 0.0087 29.4 9.2 66 412-492 119-188 (568)
479 PF08626 TRAPPC9-Trs120: Trans 25.9 4.7E+02 0.01 32.7 11.3 36 395-430 239-274 (1185)
480 PRK10869 recombination and rep 25.5 7.6E+02 0.017 27.9 12.1 97 417-513 186-296 (553)
481 PF07079 DUF1347: Protein of u 25.5 5.1E+02 0.011 28.4 9.7 100 400-509 8-107 (549)
482 PRK11619 lytic murein transgly 25.3 4E+02 0.0087 30.7 9.9 54 456-509 321-374 (644)
483 KOG0276 Vesicle coat complex C 25.2 3E+02 0.0065 31.1 8.2 17 490-506 730-746 (794)
484 PF07163 Pex26: Pex26 protein; 24.8 5.7E+02 0.012 26.1 9.4 110 403-514 40-150 (309)
485 COG1278 CspC Cold shock protei 24.5 1.7E+02 0.0037 22.8 4.5 20 162-181 13-33 (67)
486 KOG1811 Predicted Zn2+-binding 24.4 1.8E+02 0.0038 32.7 6.2 62 460-524 569-630 (1141)
487 COG5191 Uncharacterized conser 24.2 1E+02 0.0022 31.7 4.2 67 404-485 113-180 (435)
488 PF11454 DUF3016: Protein of u 24.0 2.3E+02 0.0049 25.7 6.0 21 173-193 86-106 (141)
489 cd09246 BRO1_Alix_like_1 Prote 23.4 6.5E+02 0.014 26.5 10.4 29 481-509 247-275 (353)
490 KOG3540 Beta amyloid precursor 23.1 9.4E+02 0.02 26.4 11.1 53 462-514 327-381 (615)
491 COG3014 Uncharacterized protei 22.7 4.7E+02 0.01 27.5 8.5 28 483-510 127-154 (449)
492 PF00244 14-3-3: 14-3-3 protei 22.4 3.8E+02 0.0081 26.5 7.9 27 452-478 6-32 (236)
493 KOG1524 WD40 repeat-containing 22.4 4E+02 0.0087 29.5 8.3 79 408-506 583-669 (737)
494 PF13041 PPR_2: PPR repeat fam 22.1 2.9E+02 0.0062 19.3 6.1 27 449-475 5-31 (50)
495 KOG2041 WD40 repeat protein [G 22.0 1.5E+02 0.0033 33.8 5.3 46 446-499 795-840 (1189)
496 COG1747 Uncharacterized N-term 21.1 1.1E+03 0.023 26.4 11.1 77 448-527 67-143 (711)
497 KOG4014 Uncharacterized conser 20.1 7.8E+02 0.017 23.6 10.3 81 412-511 87-198 (248)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-65 Score=511.76 Aligned_cols=362 Identities=39% Similarity=0.616 Sum_probs=334.6
Q ss_pred ecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCC-CCC
Q 006908 161 NEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPS-PLM 239 (626)
Q Consensus 161 ~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~-~~~ 239 (626)
++|+|++.|..|+.|.+||++++.||+.|+||.++.|+.|.+|.|.++.||..++.+|+. |+ ..+
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p 66 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP 66 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCC
Confidence 479999999999999999999999999999998899999999999999999999999998 43 356
Q ss_pred CCCCCcceEEEEEEEeeEEeeeeecCCCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCC
Q 006908 240 PVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQP 319 (626)
Q Consensus 240 ~~ip~~~~l~~~v~l~~~~~~~d~~~dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p 319 (626)
|.||++.+|.|+|+|+ ||+|+|+|+++|.|. ..+|..|.+|++||.|++.+ + +|+++. -.
T Consensus 67 p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd--~~~P~~g~~V~v~~~G~~~~--~-~f~~~~-----~~ 126 (397)
T KOG0543|consen 67 PKIPSNATLLFEVELL----------DGGIIKRIIREGEGD--YSRPNKGAVVKVHLEGELED--G-VFDQRE-----LR 126 (397)
T ss_pred CCCCCCcceeeeeccc----------CCceEEeeeecCCCC--CCCCCCCcEEEEEEEEEECC--c-ceeccc-----cc
Confidence 7899999999999999 799999999999996 35689999999999999976 4 775443 34
Q ss_pred EEEEcCC-CcchhhHHHHhhcCCCCCEEEEEecCCCccc-cCCCCCCCCCCcceeeeeeecccc-cCCCCCCCChhhHHH
Q 006908 320 LEFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGAHIQWEIELLGFE-KPKDWTGLSFDGIMD 396 (626)
Q Consensus 320 ~~f~lG~-~~v~~gle~~l~~M~~GE~~~~~i~~~~ayg-~~~~~~~ip~~~~l~~~vel~~~~-~~~~~~~~~~~e~~~ 396 (626)
|+|.+|+ ..|+.||+.||++|++||++.|+|+|.|||| ..++++.|||++++.|+|+|++|. .....|.|..++++.
T Consensus 127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~ 206 (397)
T KOG0543|consen 127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLE 206 (397)
T ss_pred eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHH
Confidence 8899998 5899999999999999999999999999999 667889999999999999999999 444556677778999
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.|...++.||.+|+.|+|..|+..|.+|+..|.+..+.++++.++...++..||+|+|+||+|+++|..|+..|+++|++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcccccc
Q 006908 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGI 556 (626)
Q Consensus 477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (626)
+|+|+||+||+|+||..+++|+.|+.+|++|++++|+| ++++.+|..|++++++++.+++++|++||.+......+...
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~k~~s 365 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESAKTKS 365 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999999999 79999999999999999999999999999998766555443
Q ss_pred c
Q 006908 557 E 557 (626)
Q Consensus 557 ~ 557 (626)
+
T Consensus 366 ~ 366 (397)
T KOG0543|consen 366 E 366 (397)
T ss_pred c
Confidence 3
No 2
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-34 Score=289.08 Aligned_cols=345 Identities=25% Similarity=0.370 Sum_probs=258.3
Q ss_pred ecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeecccccc
Q 006908 37 RPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG 116 (626)
Q Consensus 37 ~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g 116 (626)
++|.|+.+|..||.|.+||++++.||+.|+||.+ +.|+.|.+|.+.++.||..++.+|+. |
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-----~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g 61 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-----GDPFKFDLGKGSVIKGWDLGVATMKK--------------G 61 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-----CCceeeecCCCccccccccccccccc--------------c
Confidence 4799999999999999999999999999999985 67999999999999999999999998 5
Q ss_pred CCCCCCCCCCCCCCCceEEEEEEeeeecccccccccccEEEEEeecCCC-cCCCCCCCeEEEEEEEEeCCCcEEEecCCC
Q 006908 117 EDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREG 195 (626)
Q Consensus 117 ~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~~~v~~D~~v~~~i~~~G~g-~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~ 195 (626)
..+.| +.||++++|.|+|+|+ |++|+++|+++|.| +.+|..|..|+|||.+.+.++ +|+++.
T Consensus 62 ~~~~p----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~-- 124 (397)
T KOG0543|consen 62 EAGSP----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE-- 124 (397)
T ss_pred ccCCC----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc--
Confidence 55554 8899999999999998 88999999999999 999999999999999998888 666553
Q ss_pred ccEEEEcCC-CCccchHHHhhccCCCCcEEEEEEeCCccCCCC--CCCCCCCcceEEEEEEEeeEEeeeeecCCCcEEEE
Q 006908 196 EPYFFTFGK-SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP--LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR 272 (626)
Q Consensus 196 ~p~~~~~g~-g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~--~~~~ip~~~~l~~~v~l~~~~~~~d~~~dg~v~k~ 272 (626)
..|.|.+|+ ..+|.||+.+|..|++||.+.|+|+|+|+||.. .+|.||||++|.|+|+|++|....+
T Consensus 125 ~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~---------- 194 (397)
T KOG0543|consen 125 LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKED---------- 194 (397)
T ss_pred cceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcc----------
Confidence 347888887 589999999999999999999999999999943 4588999999999999999952111
Q ss_pred EeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCCc-chhhHHHHhhcCCCCCEEEEEec
Q 006908 273 RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL-VPEGFEMCVRLMLPGEIALVTCP 351 (626)
Q Consensus 273 il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~~-v~~gle~~l~~M~~GE~~~~~i~ 351 (626)
....+ ....++.+..+.- ..|+. -|..|.-. -..-.+.|+..|.
T Consensus 195 ------~s~~~-----~~~e~l~~A~~~k-e~Gn~-------------~fK~gk~~~A~~~Yerav~~l~---------- 239 (397)
T KOG0543|consen 195 ------ESWKM-----FAEERLEAADRKK-ERGNV-------------LFKEGKFKLAKKRYERAVSFLE---------- 239 (397)
T ss_pred ------ccccc-----chHHHHHHHHHHH-HhhhH-------------HHhhchHHHHHHHHHHHHHHhh----------
Confidence 00000 0000000000000 00111 12222100 1112233332221
Q ss_pred CCCccccCCCCCCCCCCcceeeeeeecccccCCCCCCCChh-hHHH---HHHHHHhhhchhhccccHHHHHHHHHHHHHh
Q 006908 352 PDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD-GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427 (626)
Q Consensus 352 ~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~~-e~~~---~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~ 427 (626)
|. ...+.+ +... ....+.+.+-.+.+.++|..|+....++|.
T Consensus 240 ----~~-----------------------------~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe- 285 (397)
T KOG0543|consen 240 ----YR-----------------------------RSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE- 285 (397)
T ss_pred ----cc-----------------------------ccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 00 000111 1111 223456788899999999999999999999
Q ss_pred cccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 006908 428 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA-QRDFEM 506 (626)
Q Consensus 428 l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA-~~~~~k 506 (626)
+.|.+ +.+++.+|.|++.+++|+.|+.++.+|++++|+|-.+...+..+..+..++.+. .+.|.+
T Consensus 286 ---~~~~N-----------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 286 ---LDPNN-----------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred ---cCCCc-----------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776 678999999999999999999999999999999977777777776666665554 555555
Q ss_pred HHhc
Q 006908 507 MMKV 510 (626)
Q Consensus 507 Al~l 510 (626)
.+..
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 5544
No 3
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-34 Score=267.56 Aligned_cols=275 Identities=27% Similarity=0.378 Sum_probs=241.2
Q ss_pred CcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCCcchhhHHHHhhcCCCCCEE
Q 006908 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIA 346 (626)
Q Consensus 267 g~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~ 346 (626)
.+|.|+||..|.|..|..+ .|.+|++||.....++.+++++||+- .|+|+++++|...-++.||.+|.+|+++|++
T Consensus 10 ~gv~Kril~~G~g~l~e~~--dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 10 EGVKKRILHGGTGELPEFI--DGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred hhhhHhhccCCCccCcccc--CCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 5789999999999988664 69999999999998888889999885 5899999999999999999999999999999
Q ss_pred EEEecCCC--------------ccccCCCCC---------CC--------------CCCcceeeeeeecccccCC----C
Q 006908 347 LVTCPPDY--------------AYDKFLRPA---------NV--------------PEGAHIQWEIELLGFEKPK----D 385 (626)
Q Consensus 347 ~~~i~~~~--------------ayg~~~~~~---------~i--------------p~~~~l~~~vel~~~~~~~----~ 385 (626)
.|+|.-.. +-|...... .+ -.=.+++|.++|+.+..|. +
T Consensus 86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e 165 (329)
T KOG0545|consen 86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRE 165 (329)
T ss_pred HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccc
Confidence 99984321 112211100 00 0015799999999998875 4
Q ss_pred CCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccC----CCCChhHHHHHhhhhhHHHHHHHHHHHHcC
Q 006908 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLG 461 (626)
Q Consensus 386 ~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~----~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~ 461 (626)
.|.|+.++++.....++++||.+|+.|+|.+|...|+.|+-.+.++ .|. +.+|..+......+++|.++|+++.+
T Consensus 166 ~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~-e~eW~eLdk~~tpLllNy~QC~L~~~ 244 (329)
T KOG0545|consen 166 TWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPG-EPEWLELDKMITPLLLNYCQCLLKKE 244 (329)
T ss_pred cccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCC-ChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence 5789999999999999999999999999999999999999887765 343 35788888889999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006908 462 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFK 541 (626)
Q Consensus 462 ~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (626)
+|.+++++|+.+|..+|.|.||||+||+|+....+..+|.++|.++|+++|...+.+.++|..+..++++.+...|-.++
T Consensus 245 e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~ 324 (329)
T KOG0545|consen 245 EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCR 324 (329)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred ccccC
Q 006908 542 GLFDK 546 (626)
Q Consensus 542 ~~~~~ 546 (626)
+||+.
T Consensus 325 kmfs~ 329 (329)
T KOG0545|consen 325 KMFSQ 329 (329)
T ss_pred HhcCC
Confidence 99973
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.8e-28 Score=217.54 Aligned_cols=171 Identities=21% Similarity=0.296 Sum_probs=141.0
Q ss_pred EEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeeccccccc---ccccEEE
Q 006908 81 HVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA---DDFGVVK 157 (626)
Q Consensus 81 ~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~~~v~---~D~~v~~ 157 (626)
|++|.+++++|++.+|.+|..|++..+.+||+++||..+.. .-..++|.+.++.+....... .+..+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I 72 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG--------DLNILVITILLVLLFRASAAEKWNPDEELQI 72 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc--------cccceEEEeeeeehhhhhhhhhcCCCCceeE
Confidence 35788999999999999999999999999999999966543 124577888877764332222 2333433
Q ss_pred EEeecCC-CcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCC
Q 006908 158 KVINEGQ-GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTP 235 (626)
Q Consensus 158 ~i~~~G~-g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g 235 (626)
.+++.-. .....+.||.|.+||++.+.||++||||. ++.|++|.||.|++|+||++||.+|++||++.+.|||+++||
T Consensus 73 ~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG 152 (188)
T KOG0549|consen 73 GVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYG 152 (188)
T ss_pred EEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCc
Confidence 4443311 23778999999999999999999999985 688999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCcceEEEEEEEeeEEe
Q 006908 236 SPL-MPVVEGCEEVHFEVELVHLIQ 259 (626)
Q Consensus 236 ~~~-~~~ip~~~~l~~~v~l~~~~~ 259 (626)
+.+ ++.||+++.|+|+|+|.++.+
T Consensus 153 ~~G~~~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 153 ERGAPPKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred cCCCCCCCCCCeeEEEEEEEEEeec
Confidence 876 456999999999999999864
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.8e-27 Score=212.28 Aligned_cols=174 Identities=24% Similarity=0.335 Sum_probs=143.2
Q ss_pred EEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcceEEEEEEEeeEEeee---eecCCCcEEEEEeeC
Q 006908 200 FTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVR---DMLGDGRLIKRRIRD 276 (626)
Q Consensus 200 ~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~~l~~~v~l~~~~~~~---d~~~dg~v~k~il~~ 276 (626)
|++|.+.+|||++++|.+|+.|+++.+.+||+++||..+. ..--.++|.+.+..++... ....+..+.-.++++
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~ 77 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR---GDLNILVITILLVLLFRASAAEKWNPDEELQIGVLKK 77 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccc---ccccceEEEeeeeehhhhhhhhhcCCCCceeEEEEEC
Confidence 3578999999999999999999999999999999994322 1223467777777776542 233445566666665
Q ss_pred CC-CCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCCcchhhHHHHhhcCCCCCEEEEEecCCCc
Q 006908 277 GK-GEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYA 355 (626)
Q Consensus 277 G~-G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~~~i~~~~a 355 (626)
-. ... ....||.|.+||+|.+.| |++| ||++. +++|+.|.||.++||+||+.+|.+|++||+..++|||+++
T Consensus 78 p~~C~~---kak~GD~l~~HY~g~leD--Gt~f-dSS~~-rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~Lg 150 (188)
T KOG0549|consen 78 PEECPE---KAKKGDTLHVHYTGSLED--GTKF-DSSYS-RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLG 150 (188)
T ss_pred Cccccc---cccCCCEEEEEEEEEecC--CCEE-eeecc-CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCcccc
Confidence 22 221 236899999999999987 9998 55665 6899999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCcceeeeeeecccccC
Q 006908 356 YDKFLRPANVPEGAHIQWEIELLGFEKP 383 (626)
Q Consensus 356 yg~~~~~~~ip~~~~l~~~vel~~~~~~ 383 (626)
||+.|.++.||++++|.|+|||+.+...
T Consensus 151 YG~~G~~~~IP~~A~LiFdiELv~i~~~ 178 (188)
T KOG0549|consen 151 YGERGAPPKIPGDAVLIFDIELVKIERG 178 (188)
T ss_pred CccCCCCCCCCCCeeEEEEEEEEEeecC
Confidence 9999999999999999999999998764
No 6
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.1e-25 Score=175.78 Aligned_cols=106 Identities=30% Similarity=0.608 Sum_probs=102.0
Q ss_pred ceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEe
Q 006908 30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109 (626)
Q Consensus 30 gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~i 109 (626)
||.++++.+|+|...|+.|+.|++||++.+.||+.|+||.+ ++.|+.|.+|.+++|.||++++..|.+||++.++|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~d----r~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti 77 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRD----RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTI 77 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccc----cCCCeeEEecCcceeechhhcchhccccccceeee
Confidence 68999999999988899999999999999999999999998 88999999999999999999999999999999999
Q ss_pred eccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (626)
Q Consensus 110 p~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~ 143 (626)
+|++|||..|.| ..||||++|+|+|+|+++
T Consensus 78 ~pd~aYG~~G~p----~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 78 SPDYAYGPRGHP----GGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccccCCCCCC----CccCCCcEEEEEEEEEec
Confidence 999999999964 899999999999999986
No 7
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-24 Score=172.19 Aligned_cols=106 Identities=36% Similarity=0.600 Sum_probs=98.1
Q ss_pred cEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCCcchhhHHHHhhcCCCCCEEE
Q 006908 268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL 347 (626)
Q Consensus 268 ~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~ 347 (626)
++.+.+|.+|+|.. .|.+|++|++||+|.+.| |+.| ||+.+ +++||.|.+|.++||.||+.++..|.+||++.
T Consensus 2 Gv~~~~i~~Gdg~t---fpK~Gqtvt~hYtg~L~d--G~kf-DSs~d-r~kPfkf~IGkgeVIkGwdegv~qmsvGekak 74 (108)
T KOG0544|consen 2 GVEKQVISPGDGRT---FPKKGQTVTVHYTGTLQD--GKKF-DSSRD-RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAK 74 (108)
T ss_pred CceeEEeeCCCCcc---cCCCCCEEEEEEEeEecC--CcEe-ecccc-cCCCeeEEecCcceeechhhcchhccccccce
Confidence 36788999999964 378999999999999987 9998 66667 78999999999999999999999999999999
Q ss_pred EEecCCCccccCCCCCCCCCCcceeeeeeeccc
Q 006908 348 VTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380 (626)
Q Consensus 348 ~~i~~~~ayg~~~~~~~ip~~~~l~~~vel~~~ 380 (626)
++|+|+||||..|.+..||||++|.|+|||+++
T Consensus 75 Lti~pd~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 75 LTISPDYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred eeeccccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 999999999999999999999999999999976
No 8
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-24 Score=200.59 Aligned_cols=113 Identities=31% Similarity=0.629 Sum_probs=106.4
Q ss_pred cccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCC
Q 006908 20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM 99 (626)
Q Consensus 20 ~~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m 99 (626)
.+-.++++++||.|++++.|+|.. |..+|.|.|||++++.||++||||++ ++.|+.|.|| ++|+||.++|.+|
T Consensus 92 k~~~v~~~~sgl~y~~~~~G~G~~-~~~~~~V~vhY~G~l~~G~vFDsS~~----rg~p~~f~l~--~vI~Gw~egl~~M 164 (205)
T COG0545 92 KEKGVKTLPSGLQYKVLKAGDGAA-PKKGDTVTVHYTGTLIDGTVFDSSYD----RGQPAEFPLG--GVIPGWDEGLQGM 164 (205)
T ss_pred ccCCceECCCCcEEEEEeccCCCC-CCCCCEEEEEEEEecCCCCccccccc----cCCCceeecC--CeeehHHHHHhhC
Confidence 345678899999999999999988 99999999999999999999999998 8999999996 9999999999999
Q ss_pred CCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908 100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (626)
Q Consensus 100 ~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~ 143 (626)
++|++++++|||++|||..|.+ +.||||++|+|+|+|+++
T Consensus 165 ~vG~k~~l~IP~~laYG~~g~~----g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 165 KVGGKRKLTIPPELAYGERGVP----GVIPPNSTLVFEVELLDV 204 (205)
T ss_pred CCCceEEEEeCchhccCcCCCC----CCCCCCCeEEEEEEEEec
Confidence 9999999999999999999874 559999999999999987
No 9
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.6e-22 Score=186.95 Aligned_cols=104 Identities=24% Similarity=0.341 Sum_probs=98.7
Q ss_pred ccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEec-CCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe
Q 006908 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSH-REGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229 (626)
Q Consensus 151 ~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~-~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~ 229 (626)
..+|+.+.+++.|.| ..|+.++.|+|||++++.||++|||+ .++.|+.|.+| ++|+||.+||.+|++|++++++||
T Consensus 99 ~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP 175 (205)
T COG0545 99 LPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIP 175 (205)
T ss_pred CCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeC
Confidence 667999999999999 89999999999999999999999998 68999999998 999999999999999999999999
Q ss_pred CCccCCCCCCCC-CCCcceEEEEEEEeeE
Q 006908 230 SQYLTPSPLMPV-VEGCEEVHFEVELVHL 257 (626)
Q Consensus 230 ~~~~~g~~~~~~-ip~~~~l~~~v~l~~~ 257 (626)
|++|||..+.+. ||||++|+|+|+|+++
T Consensus 176 ~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 176 PELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred chhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 999999988544 9999999999999986
No 10
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.86 E-value=4e-21 Score=184.62 Aligned_cols=113 Identities=24% Similarity=0.451 Sum_probs=106.0
Q ss_pred cccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCC
Q 006908 20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM 99 (626)
Q Consensus 20 ~~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m 99 (626)
.+.+++++++|+.|+++++|+|.. |..||.|.|||++++.||++|+||+. .+.|+.|.+| ++++||+++|.+|
T Consensus 93 k~~gv~~t~sGl~y~vi~~G~G~~-p~~~d~V~v~Y~g~l~dG~vfdss~~----~g~P~~f~l~--~vipG~~eaL~~M 165 (206)
T PRK11570 93 KKEGVNSTESGLQFRVLTQGEGAI-PARTDRVRVHYTGKLIDGTVFDSSVA----RGEPAEFPVN--GVIPGWIEALTLM 165 (206)
T ss_pred hcCCcEECCCCcEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCEEEeccC----CCCCeEEEee--chhhHHHHHHcCC
Confidence 356889999999999999999986 99999999999999999999999997 6789999995 7999999999999
Q ss_pred CCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908 100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (626)
Q Consensus 100 ~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~ 143 (626)
++|+++.|+|||+++||..+.+ +.|||+++|+|+|+|++|
T Consensus 166 ~~G~k~~~~IP~~lAYG~~g~~----~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 166 PVGSKWELTIPHELAYGERGAG----ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CCCCEEEEEECHHHcCCCCCCC----CCcCCCCeEEEEEEEEEE
Confidence 9999999999999999999874 789999999999999987
No 11
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.1e-21 Score=181.25 Aligned_cols=120 Identities=23% Similarity=0.460 Sum_probs=109.8
Q ss_pred CCCCCcccccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEc-CCcEEEeeccCCCCCCcceE-EEeCCCccch
Q 006908 13 KKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIR-HVLGKSKILL 90 (626)
Q Consensus 13 ~~~~~~~~~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~-dG~~~~st~~~~~~~~~p~~-~~lg~~~~~~ 90 (626)
.+.+.++...-..+.++||.|.-++.|.|.. |..|++|.+||.+++. +|++|++++. +.|+. |.+|.+++|+
T Consensus 104 ~~~~~ek~~~~~~tl~~Gl~y~D~~vG~G~~-a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-----~kp~~~f~lg~g~VIk 177 (226)
T KOG0552|consen 104 ISKEVEKQKPKSRTLPGGLRYEDLRVGSGPS-AKKGKRVSVRYIGKLKGNGKVFDSNFG-----GKPFKLFRLGSGEVIK 177 (226)
T ss_pred ccccccccCccceecCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEecCCCeEeecccC-----CCCccccccCCCCCCc
Confidence 3445566666568999999999999999987 9999999999999998 9999999984 67888 9999999999
Q ss_pred hHHhhcCCCCCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908 91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143 (626)
Q Consensus 91 gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~ 143 (626)
||+.+|.+|++|.+++|+|||+++||..+. +.||||++|+|+|+|+.+
T Consensus 178 G~d~gv~GMkvGGkRrviIPp~lgYg~~g~-----~~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 178 GWDVGVEGMKVGGKRRVIIPPELGYGKKGV-----PEIPPNSTLVFDVELLSV 225 (226)
T ss_pred hHHHhhhhhccCCeeEEEeCccccccccCc-----CcCCCCCcEEEEEEEEec
Confidence 999999999999999999999999999988 589999999999999986
No 12
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.83 E-value=7.9e-20 Score=171.42 Aligned_cols=112 Identities=19% Similarity=0.331 Sum_probs=102.1
Q ss_pred CceecCCceEEEEEec--CCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCC
Q 006908 23 RMKIVPGSLMKAVMRP--GGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML 100 (626)
Q Consensus 23 ~~~~~~~gv~~~i~~~--G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~ 100 (626)
.-..+++|++|.++.. |+|.. |+.||.|++||++++.||++|+|++. ..|+.|.+|.+++++||+++|.+|+
T Consensus 63 ~~~~t~sGl~Y~v~~~~~g~g~~-p~~gd~V~v~Y~~~~~dG~v~~ss~~-----~~P~~f~vg~~~vi~Gl~e~L~~Mk 136 (177)
T TIGR03516 63 KYETSQNGFWYYYNQKDTGEGTT-PEFGDLVTFEYDIRALDGDVIYSEEE-----LGPQTYKVDQQDLFSGLRDGLKLMK 136 (177)
T ss_pred CceECCCccEEEEEEecCCCCCc-CCCCCEEEEEEEEEeCCCCEEEeCCC-----CCCEEEEeCCcchhHHHHHHHcCCC
Confidence 3477999999999977 55555 89999999999999999999999985 3499999999999999999999999
Q ss_pred CCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908 101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144 (626)
Q Consensus 101 ~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~ 144 (626)
+||+++|+|||++|||..|.+ ..||||++|+|+|+|++|.
T Consensus 137 ~Ge~~~~~iP~~~AYG~~g~~----~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 137 EGETATFLFPSHKAYGYYGDQ----NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CCCEEEEEECHHHcCCCCCCC----CCcCcCCcEEEEEEEEEec
Confidence 999999999999999998864 6799999999999999985
No 13
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=5.9e-20 Score=179.53 Aligned_cols=125 Identities=27% Similarity=0.471 Sum_probs=118.3
Q ss_pred hHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (626)
Q Consensus 393 e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~ 472 (626)
+....|+.+|.+||.+++.++|.+|+.+|++||. +.|.+ +.+|+|+|++|.++|+|..|+++|..
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~----l~P~n-----------AVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE----LDPTN-----------AVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCc-----------chHHHHHHHHHHHhcchHHHHHHHHH
Confidence 6778999999999999999999999999999999 78877 67999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908 473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE 533 (626)
Q Consensus 473 aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (626)
||.+||.+.|||-|+|.||..+|+|++|++.|++||+++|+| ...+..|..+++++.+..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999998 689999999988877654
No 14
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.9e-19 Score=171.05 Aligned_cols=107 Identities=22% Similarity=0.328 Sum_probs=102.2
Q ss_pred cccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeC-CCcEEEecCCCccEE-EEcCCCCccchHHHhhccCCCCcEEEEE
Q 006908 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG-DGKLILSHREGEPYF-FTFGKSEVPKGLEMGIGTMTREEKAVIY 227 (626)
Q Consensus 150 ~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~-~g~~~~s~~~~~p~~-~~~g~g~~~~gle~~l~~mk~Ge~~~~~ 227 (626)
+..+|+++.-++-|.| +.|..|+.|.|||.+++. +|.+|+++..+.|+. |.+|.+.+|+||+.++.+|++|++++|+
T Consensus 117 tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrvi 195 (226)
T KOG0552|consen 117 TLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVI 195 (226)
T ss_pred ecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEEE
Confidence 3467899999999999 999999999999999998 999999999999999 9999999999999999999999999999
Q ss_pred EeCCccCCCCCCCCCCCcceEEEEEEEeeE
Q 006908 228 VTSQYLTPSPLMPVVEGCEEVHFEVELVHL 257 (626)
Q Consensus 228 v~~~~~~g~~~~~~ip~~~~l~~~v~l~~~ 257 (626)
|||++|||..+.+.||+|++|+|+|+|+.+
T Consensus 196 IPp~lgYg~~g~~~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 196 IPPELGYGKKGVPEIPPNSTLVFDVELLSV 225 (226)
T ss_pred eCccccccccCcCcCCCCCcEEEEEEEEec
Confidence 999999999999999999999999999976
No 15
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.80 E-value=3.6e-19 Score=177.29 Aligned_cols=116 Identities=24% Similarity=0.500 Sum_probs=106.3
Q ss_pred cccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCC
Q 006908 20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM 99 (626)
Q Consensus 20 ~~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m 99 (626)
.+.+++++++|++|+|+++|+|.. |..||.|.|||++++.||++|+|++. .+.|+.|.+ ++++|||+++|.+|
T Consensus 137 k~~gv~~t~sGl~y~Vi~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--~~vipG~~EaL~~M 209 (269)
T PRK10902 137 KEKGVKTTSTGLLYKVEKEGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNI 209 (269)
T ss_pred cCCCcEECCCccEEEEEeCCCCCC-CCCCCEEEEEEEEEeCCCCEeecccc----CCCceEEec--CCcchHHHHHHhcC
Confidence 456788999999999999999986 99999999999999999999999987 678999988 47999999999999
Q ss_pred CCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeecccc
Q 006908 100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147 (626)
Q Consensus 100 ~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~~ 147 (626)
++|+++.|+||++++||..+. ++|||+++|+|+|+|+++.+..
T Consensus 210 k~Gek~~l~IP~~laYG~~g~-----~gIppns~LvfeVeLl~V~~~~ 252 (269)
T PRK10902 210 KKGGKIKLVIPPELAYGKAGV-----PGIPANSTLVFDVELLDVKPAP 252 (269)
T ss_pred CCCcEEEEEECchhhCCCCCC-----CCCCCCCcEEEEEEEEEeccCc
Confidence 999999999999999999875 4699999999999999997543
No 16
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.9e-18 Score=158.35 Aligned_cols=136 Identities=32% Similarity=0.560 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (626)
Q Consensus 392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~ 471 (626)
+..+..+..+|..||.+|+.|+|.+|...|+.||..++.+. .+.+..||.|+|.|++|++.|..|+..|+
T Consensus 89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcs 158 (271)
T KOG4234|consen 89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCS 158 (271)
T ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHH
Confidence 44578899999999999999999999999999999655432 34567899999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006908 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARK 538 (626)
Q Consensus 472 ~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~ 538 (626)
+||+++|.+.+|+.|||.+|.++..|++|+.+|++.++++|.+ ..++..+.+|..++.+.+++.+.
T Consensus 159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~-~ear~~i~rl~~~i~ernEkmKe 224 (271)
T KOG4234|consen 159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR-REAREAIARLPPKINERNEKMKE 224 (271)
T ss_pred hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch-HHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 58999999888877766655443
No 17
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.78 E-value=1.7e-18 Score=162.50 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=97.8
Q ss_pred ccccEEEEEeec--CCCcCCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908 151 DDFGVVKKVINE--GQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (626)
Q Consensus 151 ~D~~v~~~i~~~--G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v 228 (626)
...|+.+.+++. |.| ..|+.||.|++||++++.+|++|+|+....|+.|.+|.+++++||+++|.+|++||+++|+|
T Consensus 67 t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~i 145 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLF 145 (177)
T ss_pred CCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEE
Confidence 556888988876 555 78999999999999999999999998777899999999999999999999999999999999
Q ss_pred eCCccCCCCCC-CCCCCcceEEEEEEEeeEE
Q 006908 229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHLI 258 (626)
Q Consensus 229 ~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~ 258 (626)
||+.|||..+. +.||+|++|+|+|+|+++.
T Consensus 146 P~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 146 PSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 99999998654 6799999999999999984
No 18
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.76 E-value=5.8e-18 Score=162.81 Aligned_cols=105 Identities=22% Similarity=0.288 Sum_probs=97.3
Q ss_pred cccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (626)
Q Consensus 150 ~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v 228 (626)
..++|+.++++++|.| ..|..+|.|.|||++++.||++|+|+. ++.|+.|.++ +++|||+++|.+|++|++++|+|
T Consensus 99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I 175 (206)
T PRK11570 99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI 175 (206)
T ss_pred ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence 3677999999999999 789999999999999999999999885 6799999995 79999999999999999999999
Q ss_pred eCCccCCCCCC-CCCCCcceEEEEEEEeeE
Q 006908 229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHL 257 (626)
Q Consensus 229 ~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~ 257 (626)
||+.+||..+. +.|||+++|+|+|+|+++
T Consensus 176 P~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 176 PHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 99999998754 579999999999999986
No 19
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.74 E-value=1.5e-17 Score=140.97 Aligned_cols=94 Identities=36% Similarity=0.639 Sum_probs=86.4
Q ss_pred CCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCC
Q 006908 41 GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC 120 (626)
Q Consensus 41 G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~ 120 (626)
|+++|+.||.|.+||++++.+|++|++++. .+.|+.|.+|.+++++||+++|.+|++|+++.|.||++++||..+.
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~----~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~ 76 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ----EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGL 76 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTT----TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTB
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeee----cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCcccc
Confidence 556699999999999999999999999976 6789999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCceEEEEEEee
Q 006908 121 PVAAPSTFPKDEELHFEIEMI 141 (626)
Q Consensus 121 ~~~~~~~i~~~~~lv~~v~l~ 141 (626)
. +..||++++|+|+|+|+
T Consensus 77 ~---~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 77 E---PPKIPPNSTLVFEIELL 94 (94)
T ss_dssp C---TTTBTTTSEEEEEEEEE
T ss_pred C---CCCcCCCCeEEEEEEEC
Confidence 3 24599999999999985
No 20
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.71 E-value=1.1e-16 Score=135.67 Aligned_cols=90 Identities=30% Similarity=0.432 Sum_probs=83.2
Q ss_pred cCCCCCCCeEEEEEEEEeCCCcEEEec-CCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCC--CCC
Q 006908 166 WETPRAPYEVKAWISAKTGDGKLILSH-REGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PVV 242 (626)
Q Consensus 166 ~~~~~~g~~V~v~y~~~~~~g~~~~s~-~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~--~~i 242 (626)
...|+.||.|++||++++.+|++|+++ ..+.|+.|.+|.+++++||+++|.+|++||+++|+|||+.+||..+. ..|
T Consensus 2 ~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~i 81 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKI 81 (94)
T ss_dssp SSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTB
T ss_pred CccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCc
Confidence 356999999999999999999999988 47899999999999999999999999999999999999999997654 459
Q ss_pred CCcceEEEEEEEe
Q 006908 243 EGCEEVHFEVELV 255 (626)
Q Consensus 243 p~~~~l~~~v~l~ 255 (626)
|++++|+|+|+|+
T Consensus 82 p~~~~l~f~Iell 94 (94)
T PF00254_consen 82 PPNSTLVFEIELL 94 (94)
T ss_dssp TTTSEEEEEEEEE
T ss_pred CCCCeEEEEEEEC
Confidence 9999999999985
No 21
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.70 E-value=1.3e-16 Score=158.96 Aligned_cols=107 Identities=23% Similarity=0.340 Sum_probs=99.1
Q ss_pred cccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908 150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (626)
Q Consensus 150 ~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v 228 (626)
..++|+.|+|+++|.| ..|+.||.|.|||++++.||++|+|+. ++.|+.|.++ .++|||+++|.+|++|+++.|+|
T Consensus 143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~I 219 (269)
T PRK10902 143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI 219 (269)
T ss_pred ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEE
Confidence 3677999999999999 789999999999999999999999874 6789999885 79999999999999999999999
Q ss_pred eCCccCCCCCCCCCCCcceEEEEEEEeeEEe
Q 006908 229 TSQYLTPSPLMPVVEGCEEVHFEVELVHLIQ 259 (626)
Q Consensus 229 ~~~~~~g~~~~~~ip~~~~l~~~v~l~~~~~ 259 (626)
|++++||..+.+.||++++|+|+|+|+++..
T Consensus 220 P~~laYG~~g~~gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 220 PPELAYGKAGVPGIPANSTLVFDVELLDVKP 250 (269)
T ss_pred CchhhCCCCCCCCCCCCCcEEEEEEEEEecc
Confidence 9999999988788999999999999999853
No 22
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.62 E-value=1.5e-15 Score=149.76 Aligned_cols=121 Identities=26% Similarity=0.432 Sum_probs=111.0
Q ss_pred hhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 006908 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (626)
Q Consensus 391 ~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~ 470 (626)
.++.+..+..++++||.||++|+|++|+.||.+++. +.|.+ ..+|.|+|.+|++++.|..|..+|
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia----~~P~N-----------pV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA----VYPHN-----------PVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc----cCCCC-----------ccchhhHHHHHHHHHHHHHHHHhH
Confidence 467788899999999999999999999999999999 66655 458999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 471 ~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
+.|+.+|....|||-|||.|...||...+|.++++.+|+|.|++ .++++.++.+..
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~-~ELkK~~a~i~S 210 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN-IELKKSLARINS 210 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc-HHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999997 567777776654
No 23
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.8e-15 Score=149.47 Aligned_cols=244 Identities=25% Similarity=0.371 Sum_probs=176.7
Q ss_pred eEEEEEEEEEecCCCcEEEeeccCC---CCCCEEEEcCCCcchhhHHHH--hhcCCCCCE----EEEEecC--CCccc--
Q 006908 291 LLCVHYKGMLLNEEKKVFYDTRVDN---DGQPLEFSSGEGLVPEGFEMC--VRLMLPGEI----ALVTCPP--DYAYD-- 357 (626)
Q Consensus 291 ~V~v~y~~~~~~~~g~~~~dt~~~~---~~~p~~f~lG~~~v~~gle~~--l~~M~~GE~----~~~~i~~--~~ayg-- 357 (626)
++++.-.| +|++|+.||.|+... +|..++| |+||.|.+.+ +...+..+. +.|.|.. ++.-+
T Consensus 110 lLSMAN~G--pNTNgSQFFITT~p~PHLdGkHVVF----GqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~ 183 (372)
T KOG0546|consen 110 LLSMANRG--PNTNGSQFFITTVPTPHLDGKHVVF----GQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKKSK 183 (372)
T ss_pred hhhhhcCC--CCCCCcceEEeCCCCCCcCCceeEE----eeEeechhHHHHHhccccccCCCCccceEeccccccccccc
Confidence 44555555 678899999998765 5777777 5677776633 334444333 2233311 11111
Q ss_pred -cCCCCCCCCCCcceeeeeeeccccc-CCCCCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCC
Q 006908 358 -KFLRPANVPEGAHIQWEIELLGFEK-PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD 435 (626)
Q Consensus 358 -~~~~~~~ip~~~~l~~~vel~~~~~-~~~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~ 435 (626)
.......-+......+. ++.. ...|...+....+..++..++.||..|++++|..|...|.++++++......+
T Consensus 184 ~~~~~~a~~~~~sgd~~~----d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~ 259 (372)
T KOG0546|consen 184 VKEDAGASEPDETGDSYE----DYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDR 259 (372)
T ss_pred ccccccCCCCCCCCCccc----ccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhccccccc
Confidence 00000001111111111 1110 12233445677888999999999999999999999999999999887522222
Q ss_pred hhH----HHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908 436 DEE----GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 436 ~ee----~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~ 511 (626)
..+ ...+..++..++.|+|.|-++++.|..|+..|..+++.++...+||||++++++.+.++++|+++++.|....
T Consensus 260 ~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~ 339 (372)
T KOG0546|consen 260 EKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKA 339 (372)
T ss_pred ccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccC
Confidence 111 1235677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 006908 512 KSSEPDATAALSKLKKQRQEVESKARKQFKGLFD 545 (626)
Q Consensus 512 P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 545 (626)
|++ ..+...+...+++..++..++++.+.+||.
T Consensus 340 p~d-~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 340 PND-KAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred cch-HHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 997 789999999999999999999999999874
No 24
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=7.1e-15 Score=151.16 Aligned_cols=109 Identities=31% Similarity=0.536 Sum_probs=99.9
Q ss_pred CCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 006908 387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466 (626)
Q Consensus 387 ~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A 466 (626)
..++.++++..|..+|.+||.+|++|+|++||++|++||. +.|+. ...|.|+|+||..+|+|.+.
T Consensus 104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~----l~p~e-----------piFYsNraAcY~~lgd~~~V 168 (606)
T KOG0547|consen 104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE----LCPDE-----------PIFYSNRAACYESLGDWEKV 168 (606)
T ss_pred hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh----cCCCC-----------chhhhhHHHHHHHHhhHHHH
Confidence 3578889999999999999999999999999999999999 55553 46899999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 467 ~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
+++|++||+++|+.+|||+||+.||-.+|++.+|+.+..-..-+
T Consensus 169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~ 212 (606)
T KOG0547|consen 169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCIL 212 (606)
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHh
Confidence 99999999999999999999999999999999999998754433
No 25
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.5e-15 Score=154.25 Aligned_cols=115 Identities=30% Similarity=0.543 Sum_probs=105.3
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+...++.||++|+.|+|..|+.+|++||. ..|.+ ..+|+|+|.||.+++.|..|+.+|..+++++
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIk----r~P~D-----------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIK----RDPED-----------ARLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCCch-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 77888999999999999999999999999 77877 6799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
|++.++|+|.|.|+..+.+|+.|++.|++++++||++ ..+...+.++...
T Consensus 423 p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~-~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 423 PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN-AEAIDGYRRCVEA 472 (539)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 5565555555443
No 26
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.56 E-value=7.6e-14 Score=128.57 Aligned_cols=83 Identities=27% Similarity=0.397 Sum_probs=74.4
Q ss_pred CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (626)
Q Consensus 45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~ 124 (626)
++.||.|.+||++++.||++|+||+. .+.|+.|.+|.+++++||+++|.+|++|++++|.|||+.|||..
T Consensus 5 i~~~~~V~v~Y~~~~~dG~v~dst~~----~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~------ 74 (156)
T PRK15095 5 VQSNSAVLVHFTLKLDDGSTAESTRN----NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP------ 74 (156)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEECCC----CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC------
Confidence 68899999999999999999999986 57899999999999999999999999999999999999999975
Q ss_pred CCCCCCCceEEEEEEeeee
Q 006908 125 PSTFPKDEELHFEIEMIDF 143 (626)
Q Consensus 125 ~~~i~~~~~lv~~v~l~~~ 143 (626)
+..++..+....+
T Consensus 75 ------d~~~v~~vp~~~f 87 (156)
T PRK15095 75 ------SPDLIQYFSRRDF 87 (156)
T ss_pred ------ChHHEEEecHHHC
Confidence 3556666665555
No 27
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.1e-14 Score=145.23 Aligned_cols=127 Identities=27% Similarity=0.420 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (626)
Q Consensus 393 e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~ 472 (626)
-.++..+.+++.||.+|++|+|..|.++|+.||. +.|.+ .+..+.+|.|+|.+..++|+..+|+.+|+.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~----idP~n-------~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN----IDPSN-------KKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc----CCccc-------cchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 3466788899999999999999999999999999 78876 455688999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908 473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV 532 (626)
Q Consensus 473 aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~ 532 (626)
|+.+||...|||.++|+||+.+++|++|+++|++|+++.-+ ..+++.|..++..++..
T Consensus 313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALKKS 370 (486)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999765 45666776666555543
No 28
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.1e-14 Score=140.40 Aligned_cols=106 Identities=29% Similarity=0.436 Sum_probs=97.8
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.|+.+|+.||.+|+.++|..|+.+|+++|. ....+ ..+.+.+|.|+|+|++.+|+|..|+.+|++|+.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk----~kc~D-------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLK----KKCAD-------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHh----hcCCC-------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999998 55555 3456889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
+|.+.||+||=|+|++.|.++.+|+.+++..+.++-.
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999999999888877643
No 29
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.51 E-value=2.1e-13 Score=144.01 Aligned_cols=118 Identities=22% Similarity=0.385 Sum_probs=108.3
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..++.+|+.+|..|+|..|+.+|++||. +.|.+ ..+|+|+|.||+++|+|.+|+.+|.+||.++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~----~~P~~-----------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAID----LDPNN-----------AELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34578899999999999999999999999 67766 4589999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE 531 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~ 531 (626)
|.++.+|+++|.+|+.+|+|++|+..|++|++++|++ ..+...+..+..++..
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~-~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD-SRFTKLIKECDEKIAE 119 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998 6788888888777753
No 30
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.4e-13 Score=125.75 Aligned_cols=83 Identities=27% Similarity=0.436 Sum_probs=73.0
Q ss_pred CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (626)
Q Consensus 45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~ 124 (626)
++.||.|+++|++++.||++|++|.. ...|+.|.+|.+++++||+++|.+|.+|++.++.|||+.|||..
T Consensus 3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e----~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~------ 72 (174)
T COG1047 3 IEKGDVVSLHYTLKVEDGEVVDTTDE----NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY------ 72 (174)
T ss_pred ccCCCEEEEEEEEEecCCcEEEcccc----cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC------
Confidence 67899999999999999999999975 46799999999999999999999999999999999999999986
Q ss_pred CCCCCCCceEEEEEEeeee
Q 006908 125 PSTFPKDEELHFEIEMIDF 143 (626)
Q Consensus 125 ~~~i~~~~~lv~~v~l~~~ 143 (626)
+..++-.+.+-.+
T Consensus 73 ------~~~lvq~vp~~~F 85 (174)
T COG1047 73 ------DPDLVQRVPRDEF 85 (174)
T ss_pred ------ChHHeEEecHHHh
Confidence 3555555554444
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.49 E-value=7.1e-13 Score=150.99 Aligned_cols=135 Identities=27% Similarity=0.393 Sum_probs=117.0
Q ss_pred CCCCCcceeeeeeecccccCCCCCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHh
Q 006908 364 NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV 443 (626)
Q Consensus 364 ~ip~~~~l~~~vel~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~ 443 (626)
.+|+...+....++..+.. ...+.++.+++...+..+++.|+.+|+.|+|++|+..|++||. +.|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~----~~p~~-------- 160 (615)
T TIGR00990 94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE----CKPDP-------- 160 (615)
T ss_pred CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCch--------
Confidence 3566666666666655544 3356789999999999999999999999999999999999999 55532
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 444 ~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
.+|+|+|.||+++++|.+|+.+|.++|+++|++.++|+++|.+|..+|+|++|+.+|.+++.+++.+.
T Consensus 161 ----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 161 ----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 37999999999999999999999999999999999999999999999999999999999988877553
No 32
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.8e-13 Score=141.58 Aligned_cols=113 Identities=27% Similarity=0.456 Sum_probs=105.1
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..++++||.+|..|+|+.|+.+|+.||. +.|.+ ..+|.|++.||.++++|.+|+.+..+.++++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~----l~p~n-----------hvlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIM----LSPTN-----------HVLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHc----cCCCc-----------cchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45788999999999999999999999999 77766 5699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
|.++|+|.|+|.++..+|+|++|+..|.+.|+.+|+| +.+...|..+.
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n-~~L~~gl~~a~ 114 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSN-KQLKTGLAQAY 114 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCch-HHHHHhHHHhh
Confidence 9999999999999999999999999999999999998 66777776665
No 33
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.46 E-value=7.6e-13 Score=125.05 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=72.8
Q ss_pred CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (626)
Q Consensus 45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~ 124 (626)
++.+++|+|+|++++.+|++|++|+. ..|+.|++|.++++|+|+++|.+|++|++++|+|||+.|||..
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~-----~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~------ 71 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY------ 71 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCC-----CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC------
Confidence 67899999999999999999999974 5799999999999999999999999999999999999999986
Q ss_pred CCCCCCCceEEEEEEeeee
Q 006908 125 PSTFPKDEELHFEIEMIDF 143 (626)
Q Consensus 125 ~~~i~~~~~lv~~v~l~~~ 143 (626)
+..++..|....+
T Consensus 72 ------d~~lV~~vpr~~F 84 (196)
T PRK10737 72 ------DENLVQRVPKDVF 84 (196)
T ss_pred ------ChHHEEEecHHHC
Confidence 3556666655544
No 34
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.45 E-value=2e-12 Score=118.60 Aligned_cols=114 Identities=17% Similarity=0.271 Sum_probs=102.5
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
.+...|..+++.|+|.+|+..|.+++. +.|.+ ..+|+++|.++.++|+|.+|+..|.+++.++|+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVM----AQPWS-----------WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 355679999999999999999999999 77776 468999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (626)
Q Consensus 480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~ 529 (626)
++.+++++|.++..+|++++|+..|++|++++|++ ......+..+...+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~-~~~~~~~~~~~~~l 139 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD-ASWSEIRQNAQIMV 139 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997 56666666655444
No 35
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.44 E-value=5.4e-13 Score=122.93 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=74.1
Q ss_pred CCCCCCeEEEEEEEEeCCCcEEEecCC-CccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcc
Q 006908 168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE 246 (626)
Q Consensus 168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~ 246 (626)
.++.|+.|++||++++.||++|+|+.. +.|+.|.+|.|++++||++||.+|++|+++.|.|||+.|||. .+.
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~-------~d~ 76 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGV-------PSP 76 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCC-------CCh
Confidence 467899999999999999999999874 799999999999999999999999999999999999999994 445
Q ss_pred eEEEEEEEeeEE
Q 006908 247 EVHFEVELVHLI 258 (626)
Q Consensus 247 ~l~~~v~l~~~~ 258 (626)
.+++.+.+..|.
T Consensus 77 ~~v~~vp~~~f~ 88 (156)
T PRK15095 77 DLIQYFSRRDFM 88 (156)
T ss_pred HHEEEecHHHCC
Confidence 566666666663
No 36
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5e-13 Score=126.35 Aligned_cols=121 Identities=26% Similarity=0.375 Sum_probs=107.1
Q ss_pred HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
..+.+++++||.+|..++|..|+.+|.+||. ++|.. ++.|.|+|.||+++++|+.+..+|.+||+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~----~nP~~-----------~~Y~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAIC----INPTV-----------ASYYTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHh----cCCCc-----------chhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 4688999999999999999999999999999 66654 67899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHH
Q 006908 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV----DKSSEPDATAALSKLKKQRQE 531 (626)
Q Consensus 476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l----~P~~~~~~~~~l~~l~~~~~~ 531 (626)
++|+.+|++|.+|++++....|++|+..+++|+.+ .+.+..++..+|..++.+.-.
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~ 132 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWE 132 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999776 233335688888877655443
No 37
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.38 E-value=2.1e-12 Score=122.03 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=73.7
Q ss_pred CCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcceE
Q 006908 169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEV 248 (626)
Q Consensus 169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~~l 248 (626)
++.++.|+++|++++.+|++|+++....|+.|.+|.++++|+|+++|.+|++|++++|.|||+.|||. .+..+
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe-------~d~~l 75 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ-------YDENL 75 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCC-------CChHH
Confidence 56789999999999999999999988899999999999999999999999999999999999999994 44556
Q ss_pred EEEEEEeeEE
Q 006908 249 HFEVELVHLI 258 (626)
Q Consensus 249 ~~~v~l~~~~ 258 (626)
+.+|.+..|.
T Consensus 76 V~~vpr~~F~ 85 (196)
T PRK10737 76 VQRVPKDVFM 85 (196)
T ss_pred EEEecHHHCC
Confidence 6666666553
No 38
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.9e-12 Score=117.18 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=73.1
Q ss_pred CCCCCCeEEEEEEEEeCCCcEEEecCC-CccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcc
Q 006908 168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE 246 (626)
Q Consensus 168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~ 246 (626)
....|+.|++||+++..||++|+||.. ..|+.|.+|.|+++|||++||.+|.+|++.+|.|||+.|||.+ +.
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~-------~~ 74 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY-------DP 74 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC-------Ch
Confidence 356789999999999999999999977 8999999999999999999999999999999999999999954 34
Q ss_pred eEEEEEEEeeEE
Q 006908 247 EVHFEVELVHLI 258 (626)
Q Consensus 247 ~l~~~v~l~~~~ 258 (626)
.++-.+.+..|.
T Consensus 75 ~lvq~vp~~~F~ 86 (174)
T COG1047 75 DLVQRVPRDEFQ 86 (174)
T ss_pred HHeEEecHHHhC
Confidence 445555555553
No 39
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.29 E-value=6.7e-11 Score=107.27 Aligned_cols=102 Identities=9% Similarity=0.091 Sum_probs=93.7
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
..+.+...|..++..|+++.|...|+-.+. +.|.+ ...|+|||.|+..+|+|.+|+..|.+|+.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~-----------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWS-----------FDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345677889999999999999999999888 66665 568999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
+|+++.++++.|.|++.+|+.+.|++.|+.|+...-.
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998743
No 40
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.26 E-value=7.7e-12 Score=130.07 Aligned_cols=120 Identities=30% Similarity=0.460 Sum_probs=110.9
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.|+.++.+||.+|+.+.|+.|+..|.+||+ +.|+. +.++.|+|.+++|.++|..|+.++.+|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~----ldpnc-----------a~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIE----LDPNC-----------AIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHh----cCCcc-----------eeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 477889999999999999999999999999 66655 668899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV 532 (626)
Q Consensus 477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~ 532 (626)
+|...|||+|+|.+++.++++-+|+.+|++...+.|+. +.+.+.+..++....++
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd-~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND-PDATRKIDECNKIVSEE 122 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 78888888887776643
No 41
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.26 E-value=1e-10 Score=105.74 Aligned_cols=113 Identities=19% Similarity=0.374 Sum_probs=99.8
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..+...|..+++.|+|.+|...|++++. ..|.+ ..++.++|.|++++++|.+|+..+.+++.++
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYN-----------SRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45577899999999999999999999998 56655 4588999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
|.++..++++|.++..+|++++|+..|+++++++|++ .........+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~ 129 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN-PEYSELKERAE 129 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chHHHHHHHHH
Confidence 9999999999999999999999999999999999997 44444444443
No 42
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.17 E-value=8.8e-11 Score=93.10 Aligned_cols=66 Identities=32% Similarity=0.605 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDK 512 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg-~~~eA~~~~~kAl~l~P 512 (626)
+.+|.++|.+++.+++|.+|+.+|+++|+++|+++.+|+++|.++..+| ++++|+++|++|++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4578999999999999999999999999999999999999999999999 79999999999999998
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.13 E-value=1.2e-10 Score=123.05 Aligned_cols=121 Identities=23% Similarity=0.316 Sum_probs=91.7
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
|..+-+.|..|+.+|..+.|+..|++||. +.|..+ .+|+|+|.++-..|+..+|..+|.+||.+.
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~----~~P~F~-----------~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALE----LQPNFP-----------DAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHh----cCCCch-----------HHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 44555666677777777777777777777 555543 378888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES 534 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~ 534 (626)
|+++.+++++|++++..|.+++|...|.+|++..|.. ..+..+|+.+.+.+....+
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-AAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-hhhhhhHHHHHHhcccHHH
Confidence 8888888888888888888888888888888888886 5677777777655554443
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=1.3e-09 Score=112.51 Aligned_cols=104 Identities=22% Similarity=0.251 Sum_probs=98.1
Q ss_pred HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
..+..+.++|..+...|++..|+..|++|+. +.|.+ ..+|+++|.++..+|+|+.|+..+.++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALA----LRPDM-----------ADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3467788999999999999999999999999 77776 45899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
++|++..+++++|.++...|++++|+++|+++++++|++
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999997
No 45
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.12 E-value=1.3e-09 Score=105.45 Aligned_cols=103 Identities=15% Similarity=0.250 Sum_probs=94.4
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHH-HHcCC--HHHHHHHHHHHH
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL-LKLGE--CRKSIEACNKVL 474 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~-~kl~~--~~~A~~~~~~aL 474 (626)
+..+...|..+...|+|+.|+..|.+|+. +.|++ ..+++++|.|+ +..|+ +.+|+..+.+++
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~-----------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGEN-----------AELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 55677899999999999999999999999 77777 45899999985 67787 599999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
+++|+++.+++.+|.+++.+|+|++|+..|+++++++|.+.
T Consensus 138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999864
No 46
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.11 E-value=4.1e-10 Score=119.20 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=72.2
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp 478 (626)
..+.+.||.+-..|+..+|..+|.+||. +.|.. +...+|||.+|..++.+++|...|.++|+..|
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~----l~p~h-----------adam~NLgni~~E~~~~e~A~~ly~~al~v~p 385 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALR----LCPNH-----------ADAMNNLGNIYREQGKIEEATRLYLKALEVFP 385 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence 3555666666666666666666666666 33322 33556666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE 533 (626)
Q Consensus 479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (626)
..+.|+.++|..|...|++++|+..|+.||.+.|.. .++..++....+.+....
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f-Ada~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF-ADALSNMGNTYKEMGDVS 439 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH-HHHHHhcchHHHHhhhHH
Confidence 666666666666666666666666666666666664 455555555554444433
No 47
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.02 E-value=4.4e-09 Score=92.36 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=91.9
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp 478 (626)
..+...|..+++.|+|++|+..|.+++. ..|.+. ....+++++|.++++.++|..|+..+.+++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLK----KYPKST--------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc--------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 4567889999999999999999999998 344331 1235788999999999999999999999999998
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 479 AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 479 ~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
++ ..+++.+|.++..++++++|+..|+++++..|++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 85 6789999999999999999999999999999997
No 48
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.01 E-value=2.6e-10 Score=113.69 Aligned_cols=120 Identities=28% Similarity=0.458 Sum_probs=109.0
Q ss_pred ChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 006908 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (626)
Q Consensus 390 ~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~ 469 (626)
..++.+++|...+-++.+++..|.++.|+..|..|+. ++|.. +.+|.++|.++++++.+..|+.+
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~----lnp~~-----------a~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIE----LNPPL-----------AILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccc----cCCch-----------hhhcccccceeeeccCCchhhhh
Confidence 4578899999999999999999999999999999999 77765 67899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 470 ~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
|..|++++|+.++.|-.+|.|+..+|+|++|..+|..|++++-+ .++...|..+.
T Consensus 171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d--E~~~a~lKeV~ 225 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD--EANSATLKEVF 225 (377)
T ss_pred hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc--HHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999865 34555555554
No 49
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.00 E-value=6.9e-09 Score=98.25 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (626)
Q Consensus 392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~ 471 (626)
......+..+...|..++..|+|++|+.+|++++.. .+...+ ...++.++|.++.++|+|++|+..+.
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKL----EEDPND--------RSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----hhccch--------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345567888999999999999999999999999983 332211 24589999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCCH
Q 006908 472 KVLDANPAHVKGLYRRGMAYMALGE--------------FEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 472 ~aL~~dp~~~ka~~~~g~a~~~lg~--------------~~eA~~~~~kAl~l~P~~~ 515 (626)
+++.++|.+..+++.+|.++..+++ +++|++.+++++.++|++.
T Consensus 97 ~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 97 QALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 9999999999999999999999988 6778888888888888863
No 50
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.00 E-value=6.3e-09 Score=118.70 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=85.1
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.+..+...|..++..|++++|+..|++++. +.|.. ...|+++|.++..+|+|++|+.++.+++++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~----l~P~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIE----LDPRV-----------TQSYIKRASMNLELGDPDKAEEDFDKALKL 394 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445677788899999999999999999998 56654 346677777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
+|+++.+|+++|.+++.+|++++|+.+|+++++++|++ ..+...+..+..
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-~~~~~~la~~~~ 444 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-IFSHIQLGVTQY 444 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-HHHHHHHHHHHH
Confidence 77777777777777777777777777777777777776 344444444443
No 51
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.93 E-value=2.2e-09 Score=88.67 Aligned_cols=83 Identities=29% Similarity=0.491 Sum_probs=71.2
Q ss_pred cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006908 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (626)
Q Consensus 411 ~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a 490 (626)
+|+|+.|+..|.+++.. .|.+. ...+++++|.||+++|+|.+|+..+++ +..++.++.+++.+|+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~----~~~~~---------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL----DPTNP---------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHH----HCGTH---------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH----CCCCh---------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 68999999999999993 33221 234788899999999999999999999 88999999999999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 006908 491 YMALGEFEEAQRDFEMM 507 (626)
Q Consensus 491 ~~~lg~~~eA~~~~~kA 507 (626)
+..+|+|++|+..|++|
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999876
No 52
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.92 E-value=2.8e-08 Score=93.65 Aligned_cols=115 Identities=19% Similarity=0.189 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (626)
Q Consensus 394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a 473 (626)
....+..+...|..++..|+|++|+..|.+|+.. .+... ....+++|+|.++.++|++.+|+..|.++
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l----~~~~~--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL----EIDPY--------DRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----cccch--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3457888899999999999999999999999983 33211 12458999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhcCCCCHHHHHH
Q 006908 474 LDANPAHVKGLYRRGMAYM-------ALGEFE-------EAQRDFEMMMKVDKSSEPDATA 520 (626)
Q Consensus 474 L~~dp~~~ka~~~~g~a~~-------~lg~~~-------eA~~~~~kAl~l~P~~~~~~~~ 520 (626)
+.++|.+..+++++|.++. .+|+++ +|+..|++++.++|.+...+..
T Consensus 99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~ 159 (168)
T CHL00033 99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQN 159 (168)
T ss_pred HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 9999999999999999999 777876 5556666777888876544433
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.91 E-value=1.2e-08 Score=101.58 Aligned_cols=105 Identities=22% Similarity=0.437 Sum_probs=98.3
Q ss_pred HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
..+++..+.|+.++.+|+|..|+..|..|+. .+|.+ ..+++.+|.+|+-+|+-..|+.+++++|+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~-----------Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNN-----------YQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchh-----------HHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 4577888999999999999999999999999 77765 56889999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
+.|+..-|...||.+++++|++++|.++|+++|..+|++.
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999763
No 54
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.90 E-value=5.6e-08 Score=84.00 Aligned_cols=124 Identities=19% Similarity=0.286 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (626)
Q Consensus 392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~ 471 (626)
..-++....+-.+|..+...|+.+.|++.|.+||. +.|.. +++|+|+|.++.-+++.++|+.+.+
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~----l~P~r-----------aSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALC----LAPER-----------ASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH----hcccc-----------hHhhccHHHHHHHcCChHHHHHHHH
Confidence 45577788888899999999999999999999999 44443 6799999999999999999999999
Q ss_pred HHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908 472 KVLDANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE 533 (626)
Q Consensus 472 ~aL~~dp~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (626)
+||++.... ..+|..||..|..+|+.+.|+.+|..|.++.... ++..|-.+.--..-.+
T Consensus 102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F---Ar~QLV~lNPYAAlCN 164 (175)
T KOG4555|consen 102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF---AREQLVELNPYAALCN 164 (175)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH---HHHHHHhcChHHHHHH
Confidence 999996433 4589999999999999999999999999997553 5666655543333333
No 55
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.90 E-value=4.9e-09 Score=81.95 Aligned_cols=64 Identities=22% Similarity=0.416 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 451 ~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+++|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3589999999999999999999999999999999999999999999999999999999999986
No 56
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.89 E-value=2.9e-08 Score=116.85 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=96.2
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp 478 (626)
..+...|..+.+.|++++|+..|.+++. +.|++ ..+++|+|.++..+|++++|+..+.++++++|
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~-----------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALE----LEPNN-----------SNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3455677778888888888888888888 66766 45889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (626)
Q Consensus 479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~ 530 (626)
+++.+++++|.++..+|++++|+..|++|++++|++ ..+......+.....
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~-a~i~~~~g~~~~~~~ 725 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ-ALITPLTPEQNQQRF 725 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-chhhhhhhHHHHHHH
Confidence 999999999999999999999999999999999987 456655555544433
No 57
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.87 E-value=2e-08 Score=82.65 Aligned_cols=98 Identities=33% Similarity=0.587 Sum_probs=88.2
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
+...|..++..|++.+|+..|.+++. ..|.+ ..++.++|.|+...+++.+|+..+.+++.+.|.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE----LDPDN-----------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 56788889999999999999999998 44443 2478899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
..+++.+|.++...|++++|...+.++++++|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999998874
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=5.3e-09 Score=112.55 Aligned_cols=102 Identities=18% Similarity=0.287 Sum_probs=61.3
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
.+.+...||.+--+++++.|+++|++|+. ++|.. +-+|.-+|.=+....+|+.|..+|..||.++
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~f-----------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRF-----------AYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCcc-----------chhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 66888999999999999999999999999 66643 2233334444444444444444444444444
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
|.+..|||-+|.+|+++++++.|.-.|++|++++|.|
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n 522 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN 522 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc
Confidence 4444444444444444444444444444444444444
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.84 E-value=2.9e-08 Score=90.98 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 006908 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497 (626)
Q Consensus 418 ~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~ 497 (626)
..+|++|++ +.|. .+.++|.++..+|+|.+|+..|.+++.++|.+..+|+.+|.++..+|++
T Consensus 13 ~~~~~~al~----~~p~--------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLS----VDPE--------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHH----cCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 456778887 4443 2567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908 498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK 535 (626)
Q Consensus 498 ~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~ 535 (626)
++|+..|++|++++|++ ..+...+..+.....+..+.
T Consensus 75 ~~A~~~y~~Al~l~p~~-~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 75 TTAINFYGHALMLDASH-PEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999997 67888888776655544443
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.2e-08 Score=105.78 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=100.8
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
.+++.|..+|..+.|.+|+.+|+.++.......+... .....++|+|.++.|++.|.+|+..++++|.+.|.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 4668899999999999999999999965444433221 23567999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (626)
Q Consensus 480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l 525 (626)
++.+|--.|.+|..+|+++.|+..|.+||.++|+| .-+...|..+
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n-~~~~~lL~~a 532 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN-IFISELLKLA 532 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc-HHHHHHHHHH
Confidence 99999999999999999999999999999999998 5566666644
No 61
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=1.4e-08 Score=101.08 Aligned_cols=131 Identities=21% Similarity=0.356 Sum_probs=109.6
Q ss_pred CChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 006908 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 468 (626)
Q Consensus 389 ~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~ 468 (626)
.++-.++....+..+.+......++|.+++..+++.++ ..|.. ...+...+--++.|+..-+++.+|++
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk----~ep~~-------~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK----NEPEE-------TMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----cCCcc-------cceeeeeeheeeecccccCCHHHHHH
Confidence 35566777788888888899999999999999999998 44432 11223344557899999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE 531 (626)
Q Consensus 469 ~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~ 531 (626)
.|+++|.++|+++.+|..||.||+.-..|++|+.+|++|++++++| ..++.-+...++..++
T Consensus 329 qC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn-~~~reGle~Akrlkkq 390 (504)
T KOG0624|consen 329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN-TRAREGLERAKRLKKQ 390 (504)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 5788888777665544
No 62
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=1.3e-07 Score=91.60 Aligned_cols=123 Identities=11% Similarity=0.105 Sum_probs=104.3
Q ss_pred ccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006908 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (626)
Q Consensus 410 ~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~ 489 (626)
..++.++++..|++++. .+|.+ ...|.++|.+|..+++++.|+..|.++++++|+++.+++.+|.
T Consensus 51 ~~~~~~~~i~~l~~~L~----~~P~~-----------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 51 SQQTPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CchhHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46788999999999999 77877 4589999999999999999999999999999999999999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 006908 490 AY-MALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPG 549 (626)
Q Consensus 490 a~-~~lg~--~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 549 (626)
++ ...|+ +++|++.|++|++++|++ ..+...|........+..+.. ..++++....+.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~ 176 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDANE-VTALMLLASDAFMQADYAQAI-ELWQKVLDLNSP 176 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 86 67787 599999999999999998 678888888877666665554 355666555444
No 63
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.82 E-value=8.5e-09 Score=81.58 Aligned_cols=67 Identities=28% Similarity=0.496 Sum_probs=61.4
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLD 475 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-~~~~A~~~~~~aL~ 475 (626)
.|..+...|..++..|+|++|+..|++|+. +.|.+ ..+|+|+|.||.+++ +|.+|+.++.++|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~-----------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNN-----------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTH-----------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 367889999999999999999999999999 56654 569999999999999 79999999999999
Q ss_pred hCC
Q 006908 476 ANP 478 (626)
Q Consensus 476 ~dp 478 (626)
++|
T Consensus 67 l~P 69 (69)
T PF13414_consen 67 LDP 69 (69)
T ss_dssp HST
T ss_pred cCc
Confidence 998
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=4e-08 Score=102.13 Aligned_cols=114 Identities=25% Similarity=0.311 Sum_probs=101.7
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
-..|..+.-.|..+|-.|++..|...+.++|. +.|.+ .++|..||..|...++-.+-..++.+|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~----l~~~~-----------~~lyI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK----LDPAF-----------NSLYIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh----cCccc-----------chHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 34688899999999999999999999999999 66654 4569999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
.+||.|+..||.||+.++-+++|++|+++|++|+.|+|+| +...++.+-
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~---~~~~iQl~~ 436 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN---AYAYIQLCC 436 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh---hHHHHHHHH
Confidence 9999999999999999999999999999999999999997 344444443
No 65
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.9e-08 Score=100.93 Aligned_cols=119 Identities=17% Similarity=0.229 Sum_probs=103.4
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k 482 (626)
-.||-+--++++++|+.+|++||. ++|.. ..+|.-+|.=|..|++-..|+..|.+|+.++|.+.+
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALk----LNp~~-----------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR 399 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALK----LNPKY-----------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR 399 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHh----cCcch-----------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence 368888889999999999999999 77765 568888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006908 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR 537 (626)
Q Consensus 483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~ 537 (626)
|||-+|++|.-++...=|+-+|++|+++-|++ +.++..|..+..++....++.+
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-sRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPND-SRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999986 7788888888877776655554
No 66
>PRK15331 chaperone protein SicA; Provisional
Probab=98.79 E-value=7.8e-08 Score=87.81 Aligned_cols=101 Identities=9% Similarity=0.157 Sum_probs=89.7
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
.+.+...|-.+|.+|+|++|...|+-... ..+.+ ...++.||.|+..+++|.+|+..|..+..++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~n-----------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCI----YDFYN-----------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45667789999999999999999987666 45555 3478999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
++++...|+.|+|++.+|+.+.|+..|..|+. .|.+
T Consensus 102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 99999999999999999999999999999998 4553
No 67
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=9.3e-09 Score=109.04 Aligned_cols=96 Identities=27% Similarity=0.415 Sum_probs=90.8
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k 482 (626)
-.|..++-.|+|++|+.+|+.||. ..|.| ..+|+.||+.+..-.+..+|+..|.+||++.|..+.
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~----v~Pnd-----------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR 499 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQ----VKPND-----------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR 499 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHh----cCCch-----------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee
Confidence 478888999999999999999999 78887 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
+.|++|.+++.+|.|.+|+..|-.||.+.+.
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999765
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.79 E-value=7e-08 Score=109.52 Aligned_cols=116 Identities=7% Similarity=0.048 Sum_probs=96.6
Q ss_pred HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
..+..++..|......|.|++|...+..++. +.|++ ..++.|+|.++.+++++++|+..|.++|.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~-----------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDS-----------SEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 3467778888888899999999999999998 67776 56888899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
.+|+++.+++.+|.++.++|+|++|++.|++++..+|++ +.++-.+..+-+
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~~~~a~~l~ 199 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGYVGWAQSLT 199 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Confidence 999999999999999999999999999999999888875 455555555444
No 69
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.79 E-value=1.3e-07 Score=94.26 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=97.2
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.+..+...|..+++.|+|..|+..|++++. ..|.++ ....+++++|.+++++++|.+|+..+.++++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~p~~~--------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALES----RYPFSP--------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCch--------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 466778899999999999999999999998 555542 12347899999999999999999999999999
Q ss_pred CCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908 477 NPAHVK---GLYRRGMAYMAL--------GEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (626)
Q Consensus 477 dp~~~k---a~~~~g~a~~~l--------g~~~eA~~~~~kAl~l~P~~~~~~~~~l~ 523 (626)
.|++.. ++|.+|.++..+ +++++|+..|++++..+|++ ..+...+.
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~ 156 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKK 156 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHH
Confidence 998876 799999999987 88999999999999999997 34443333
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=98.78 E-value=8.8e-08 Score=107.70 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=78.0
Q ss_pred hccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006908 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG 488 (626)
Q Consensus 409 f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g 488 (626)
...+++.+|+..+++|+. +.|.+ ..+|.++|.++..+|++++|+..|.+|++++|+++.+|+.+|
T Consensus 315 ~~~~~~~~A~~~~~~Al~----ldP~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 379 (553)
T PRK12370 315 DKQNAMIKAKEHAIKATE----LDHNN-----------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYG 379 (553)
T ss_pred ccchHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 366778899999999988 67776 347788888888889999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 489 MAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 489 ~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
.++..+|++++|+..|++|++++|.+
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998886
No 71
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.76 E-value=1.3e-07 Score=91.90 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=107.7
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp 478 (626)
..+..+|..+|+.|+|..|+..+++|.. +.|.+ ..+|+-+|.||.++|+++.|...|.+++++.|
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d-----------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTD-----------WEAWNLLGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCC-----------hhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence 3445599999999999999999999999 78887 45899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK 535 (626)
Q Consensus 479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~ 535 (626)
+++..+-|+|..++-.|+++.|...+..+...-+.+ ..+..+|..+..........
T Consensus 166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad-~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD-SRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhhcCChHHH
Confidence 999999999999999999999999999999887766 67889998887665544433
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.76 E-value=1.3e-07 Score=90.09 Aligned_cols=117 Identities=16% Similarity=0.215 Sum_probs=78.0
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH--------------------H---HHhhhhhHHHH
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG--------------------K---VFVGKRNLLHL 451 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~--------------------~---~~~~~~~~~~~ 451 (626)
-..+....+.|-.++.+|++..|....++||+ ..|.+..-+ . .+.+-...+++
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~----~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALE----HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhh
Confidence 34567777888889999999999999999888 556542100 0 01112234556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 452 NVAACLLKLGECRKSIEACNKVLDAN--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 452 Nla~~~~kl~~~~~A~~~~~~aL~~d--p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
|-|.-++.+|+|++|...+.+|+..- +.-+.+|-|+|.|.++.|+++.|..+|+++|+++|++.
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 66666666666666666666665421 33466777788888888888888888888888888773
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=98.75 E-value=1.2e-07 Score=106.49 Aligned_cols=113 Identities=10% Similarity=0.097 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006908 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493 (626)
Q Consensus 414 ~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~ 493 (626)
+++|+..|++|+. ++|.+ ..+|+++|.++..+|++++|+..+.++++++|.++.+++.++.+++.
T Consensus 354 ~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~ 418 (553)
T PRK12370 354 YIVGSLLFKQANL----LSPIS-----------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 5778889999988 67776 45899999999999999999999999999999999888888888999
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 006908 494 LGEFEEAQRDFEMMMKVD-KSSEPDATAALSKLKKQRQEVESKARKQFKGL 543 (626)
Q Consensus 494 lg~~~eA~~~~~kAl~l~-P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 543 (626)
+|++++|+..+++++..+ |++ +.+...+..+.....+..+... .+.++
T Consensus 419 ~g~~eeA~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~-~~~~~ 467 (553)
T PRK12370 419 HTGIDDAIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELARK-LTKEI 467 (553)
T ss_pred ccCHHHHHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHHHH-HHHHh
Confidence 999999999999999886 554 6677777777655554444433 34443
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.74 E-value=2.8e-07 Score=90.12 Aligned_cols=116 Identities=19% Similarity=0.296 Sum_probs=89.2
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
.+...|..++..|+|++|+..|.+++.... .+ .....+.++|.|+..+|++.+|+..+.+++..+|.
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPL--YP-----------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccc--cc-----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 344566777777778888877777776211 01 12346888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (626)
Q Consensus 480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~ 529 (626)
+..+++.+|.++...|++++|+..+++++.+.|.+ ......+..+....
T Consensus 168 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 216 (234)
T TIGR02521 168 RPESLLELAELYYLRGQYKDARAYLERYQQTYNQT-AESLWLGIRIARAL 216 (234)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997775 44444444444433
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.72 E-value=2.2e-07 Score=95.92 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006908 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (626)
Q Consensus 412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~ 491 (626)
+..+.++..+.++|.. .+.+++ ..+..|+++|.+|..+|++..|+.++.++++++|+++.+|+.+|.++
T Consensus 40 ~~~e~~i~~~~~~l~~----~~~~~~-------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILAS----RDLTDE-------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHcc----ccCCcH-------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4678899999998862 222221 23568999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908 492 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV 532 (626)
Q Consensus 492 ~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~ 532 (626)
..+|++++|+..|++|++++|++ ..+...+..+.....+.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~ 148 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTY-NYAYLNRGIALYYGGRY 148 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCH
Confidence 99999999999999999999998 56666666654433333
No 76
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.71 E-value=2e-07 Score=109.87 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=91.4
Q ss_pred ccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006908 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (626)
Q Consensus 410 ~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~ 489 (626)
..|++++|+..|.+|+. +.|. ..++.|+|.++.++|++++|+..+.+++.++|+++.+++++|.
T Consensus 588 ~~Gr~~eAl~~~~~AL~----l~P~------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 588 IPGQPELALNDLTRSLN----IAPS------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred hCCCHHHHHHHHHHHHH----hCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33666666666666666 4442 3578999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908 490 AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK 535 (626)
Q Consensus 490 a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~ 535 (626)
++..+|++++|+..|++|++++|++ ..+..++..+.....+....
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~-~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDD-PALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999998 67888888776655544433
No 77
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.70 E-value=6.7e-08 Score=77.30 Aligned_cols=69 Identities=23% Similarity=0.413 Sum_probs=62.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (626)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~ 523 (626)
...|++.++|.+|+.++++++.++|.++.+++.+|.++..+|+|.+|+.+|+++++++|++ ..+.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~-~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD-PDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc-HHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999987 44544433
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.69 E-value=5e-07 Score=88.25 Aligned_cols=99 Identities=26% Similarity=0.369 Sum_probs=70.0
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.+..+...|..++..|+|++|+..|.+++. ..|.+ ..++.++|.++..+|++.+|+..+.+++++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE----HDPDD-----------YLAYLALALYYQQLGELEKAEDSFRRALTL 94 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456666777788888888888888888877 34443 235666777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
+|.+..+++++|.++...|++++|+..|++++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 95 NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777664
No 79
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=2.6e-07 Score=83.33 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=86.0
Q ss_pred HHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006908 419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE 498 (626)
Q Consensus 419 ~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~ 498 (626)
..|++++. ..|.+ ...+.++|.++++.+++.+|+..+.+++.++|.+..+++++|.++..+|+++
T Consensus 4 ~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 4 ATLKDLLG----LDSEQ-----------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hhHHHHHc----CChhh-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 35677777 56654 3467889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908 499 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK 535 (626)
Q Consensus 499 eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~ 535 (626)
+|+..|+++++++|.+ ......+..+.....+..+.
T Consensus 69 ~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 69 EAIDAYALAAALDPDD-PRPYFHAAECLLALGEPESA 104 (135)
T ss_pred HHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999997 67777777776655544433
No 80
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.64 E-value=4e-07 Score=104.31 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=61.6
Q ss_pred hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCC
Q 006908 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK----SIEACNKVLDANPA 479 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~----A~~~~~~aL~~dp~ 479 (626)
.|..++..|++++|+..|.+++. ..|.+ ..+++++|.++..+|++.+ |+..|.++++++|+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~----~~p~~-----------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALA----RGLDG-----------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 35566777888888888888777 44444 2345555555555555553 45555555555555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (626)
Q Consensus 480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l 525 (626)
++.+++.+|.++..+|++++|+..|++++.++|++ ..+...+..+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~ 327 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-PYVRAMYARA 327 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 55555555555555555555555555555555554 3344444433
No 81
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.64 E-value=4.1e-07 Score=81.36 Aligned_cols=105 Identities=23% Similarity=0.395 Sum_probs=89.2
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..+...|...++.|+|..|+..|+.... ..|.. +....+.++++-+|++.++|..|+..+.+-|+++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~----ryP~g--------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDT----RYPFG--------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34566788888999999999999998877 34432 2234678899999999999999999999999999
Q ss_pred CCCHH---HHHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCC
Q 006908 478 PAHVK---GLYRRGMAYMALGE---------------FEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 478 p~~~k---a~~~~g~a~~~lg~---------------~~eA~~~~~kAl~l~P~~ 514 (626)
|.+++ |+|++|.+++.+.. ..+|..+|++.+..-|++
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 98865 89999999999987 788999999999998886
No 82
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.63 E-value=5.6e-07 Score=102.25 Aligned_cols=119 Identities=12% Similarity=0.089 Sum_probs=102.5
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.+......++.+++.+++++|+..+++++. ..|++ ...++++|.|+.++|+|++|+..|.+++..
T Consensus 119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~-----------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~ 183 (694)
T PRK15179 119 SSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSS-----------AREILLEAKSWDEIGQSEQADACFERLSRQ 183 (694)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCC-----------HHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 356777899999999999999999999999 77777 568999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (626)
Q Consensus 477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~ 530 (626)
+|+++.+++.+|.++..+|+.++|...|++|+++..+-.+...+.+..+.....
T Consensus 184 ~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (694)
T PRK15179 184 HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLA 237 (694)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999865433343445555544433
No 83
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.62 E-value=6.8e-07 Score=89.99 Aligned_cols=110 Identities=11% Similarity=0.154 Sum_probs=90.2
Q ss_pred Hhhhchh-hccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 402 RVTGNRL-FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 402 k~~Gn~~-f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
...|..+ ++.|+|++|+..|++.+. ..|.+. ....+++.+|.+|+..++|.+|+..|.+++...|++
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~----~yP~s~--------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK----KYPDST--------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 4455554 567999999999999999 445431 223578899999999999999999999999998875
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908 481 ---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (626)
Q Consensus 481 ---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~ 524 (626)
+.|+|++|.++..+|++++|+..|+++++..|++ ..+.....+
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s-~~a~~A~~r 259 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT-DGAKQAQKR 259 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHHHH
Confidence 7799999999999999999999999999999997 344433333
No 84
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=8.6e-07 Score=91.90 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=111.1
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
...+-..|.++...++-..|+..|++|++ ++|.| ..+|+.+|++|--|+.+-=|+-++++|+++.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvd----i~p~D-----------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k 428 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVD----INPRD-----------YRAWYGLGQAYEIMKMHFYALYYFQKALELK 428 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHh----cCchh-----------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence 34555789999999999999999999999 77776 5689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 544 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 544 (626)
|++...|--+|.||.++++.++|+++|++|+.....+ ..+...|+.+.+.++..+++. ..|.+..
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eAa-~~yek~v 493 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEAA-QYYEKYV 493 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999997665 567777888887777665544 2444433
No 85
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.61 E-value=8.8e-08 Score=103.52 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=78.8
Q ss_pred CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (626)
Q Consensus 45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~ 124 (626)
++.||.|.++|+++. +|..|+++. ..++.|.+|.+.+++||+++|.||++|++++|.+++...|+..+.
T Consensus 147 ~~~gD~V~v~~~~~~-dg~~~~~~~------~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~---- 215 (408)
T TIGR00115 147 AEKGDRVTIDFEGFI-DGEAFEGGK------AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL---- 215 (408)
T ss_pred cCCCCEEEEEEEEEE-CCEECcCCC------CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC----
Confidence 688999999999975 898888653 468999999999999999999999999999999998888886655
Q ss_pred CCCCCCCceEEEEEEeeeeccccccccc
Q 006908 125 PSTFPKDEELHFEIEMIDFAKAKIIADD 152 (626)
Q Consensus 125 ~~~i~~~~~lv~~v~l~~~~~~~~v~~D 152 (626)
+|.++.|.|+|.++.....+.-|
T Consensus 216 -----~gk~~~f~v~i~~I~~~~~peld 238 (408)
T TIGR00115 216 -----AGKEATFKVTVKEVKEKELPELD 238 (408)
T ss_pred -----CCCeEEEEEEEEEeccCCCCCCC
Confidence 48999999999999765544433
No 86
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=4e-07 Score=98.33 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~ 529 (626)
.+-+|..+.++|+.++|+..+++|+.+||.|+-+.|.+|..+..+++|++|+..|++..++-|++ ..+...+.++.+++
T Consensus 526 ~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~ 604 (638)
T KOG1126|consen 526 LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRL 604 (638)
T ss_pred HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555555555555555555555555555555543 34444444444444
Q ss_pred H
Q 006908 530 Q 530 (626)
Q Consensus 530 ~ 530 (626)
.
T Consensus 605 ~ 605 (638)
T KOG1126|consen 605 G 605 (638)
T ss_pred c
Confidence 3
No 87
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.9e-07 Score=92.51 Aligned_cols=114 Identities=24% Similarity=0.356 Sum_probs=96.9
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHH-hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF-VGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~-~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
.+.+++-+|..++-..+.+.|+.+|+++|+ +.|+..+-.... ..-....+-+.|.-.++.|+|..|.+.|+.+|.
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALR----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhc----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 467888899999999999999999999999 777654432222 122334567789999999999999999999999
Q ss_pred hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 476 ANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 476 ~dp~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+||+| ++.|++||.++..+|+..+|+.+++.|++|||.-
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 99976 7789999999999999999999999999999864
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.58 E-value=1.7e-07 Score=73.73 Aligned_cols=67 Identities=28% Similarity=0.489 Sum_probs=60.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (626)
Q Consensus 457 ~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~ 524 (626)
+++.|+|.+|+..+.+++..+|++..+++.+|.||+..|++++|...|++++..+|++ +.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999996 666666554
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.57 E-value=8.7e-07 Score=84.49 Aligned_cols=104 Identities=19% Similarity=0.276 Sum_probs=91.6
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+.-+.+-|..++.+|+|++|...|.+|+. .|.-. .....+-|++.|.+++|+++.|..+++++|+++
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-----~P~Y~--------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALA-----DPAYG--------EPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHh-----CCCCC--------CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 55678899999999999999999999998 23221 124478999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
|+++-+..-+++.++..|+|-.|...+++...--+.+
T Consensus 170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~ 206 (250)
T COG3063 170 PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ 206 (250)
T ss_pred cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999988776654
No 90
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.57 E-value=7.8e-07 Score=101.91 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=83.7
Q ss_pred HHHHhhhchhhccccHHH----HHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 399 EKIRVTGNRLFKEGKFEL----AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~----A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
..+...|..++..|++++ |+..|++++. +.|.+ ..++.++|.++.++|++++|+..+.+++
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----FNSDN-----------VRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344567888888888885 7888888888 56665 4578888888888888888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
.++|+++.+++.+|.++..+|++++|++.|++++..+|++
T Consensus 312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8888888888888888888888888888888888888875
No 91
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=1.2e-06 Score=90.77 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=93.5
Q ss_pred HHHHhhhchhhccc-cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH--HHHHHHHHHHHH
Q 006908 399 EKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC--RKSIEACNKVLD 475 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g-~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~--~~A~~~~~~aL~ 475 (626)
..+..+|..+.+.+ ++.+|+..+.+++. .+|.+ ..+|++++.++.+++++ .+++..+.++|+
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~----~npkn-----------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~ 136 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAE----DNPKN-----------YQIWHHRRWLAEKLGPDAANKELEFTRKILS 136 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHH----HCCcc-----------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 34455666666666 67899999999998 56665 45899999999999874 788999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
++|.|..||+.|+.++..+++|++|++++.++|++||.| ..++.....+.
T Consensus 137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-~sAW~~R~~vl 186 (320)
T PLN02789 137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-NSAWNQRYFVI 186 (320)
T ss_pred hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-hhHHHHHHHHH
Confidence 999999999999999999999999999999999999998 45666655543
No 92
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.54 E-value=3.5e-06 Score=84.17 Aligned_cols=125 Identities=25% Similarity=0.325 Sum_probs=98.8
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..+...|..+++.|+|.+|+..|++++. ..|..+ ....+.+++|.+|+++++|..|+..+++.++..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~--------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGP--------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCh--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34456788888999999999999999999 555542 234567899999999999999999999999999
Q ss_pred CCC---HHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHHHH
Q 006908 478 PAH---VKGLYRRGMAYMALGE------------------FEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQEVES 534 (626)
Q Consensus 478 p~~---~ka~~~~g~a~~~lg~------------------~~eA~~~~~kAl~l~P~~~--~~~~~~l~~l~~~~~~~~~ 534 (626)
|++ ..|+|.+|.++..++. ..+|+..|++.++.-|+.. ++++..+..++.++.+.+-
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 877 4589999999866651 2578899999999999864 4566666666666665443
No 93
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.53 E-value=1.5e-06 Score=93.27 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=81.4
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
+...+..+.+.|+|++|+..|.+++. ..|.+.. .....+++++|.++++++++.+|+..+.++++.+|.+
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEK----LGGDSLR------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHH----hcCCcch------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 33445555555556666655555554 2222110 0123457788989999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
..+++.+|.++...|++++|++.|++++..+|.+...+...+..+.
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999888876434444444443
No 94
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.53 E-value=3.2e-07 Score=96.46 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 446 ~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka---~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
....|+|+|.+|+++++|++|+..|++||+++|++..+ ||++|.||..+|++++|+++|++|+++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999999865 999999999999999999999999998
No 95
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.53 E-value=1.4e-06 Score=106.30 Aligned_cols=124 Identities=18% Similarity=0.277 Sum_probs=99.4
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhH--H-HHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE--G-KVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee--~-~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
+..+...|..+++.|++++|+..|++++. ..|.+... + ..+......+..++|.++++.+++.+|+..|.+++
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~----~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALA----LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44566788999999999999999999998 45544221 1 11111223345677999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
.++|.++.+++.+|.++..+|++++|++.|++|++++|++ ..+...+..+.
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~-~~a~~~L~~l~ 429 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN-TNAVRGLANLY 429 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 45555555543
No 96
>PRK01490 tig trigger factor; Provisional
Probab=98.52 E-value=2.3e-07 Score=101.19 Aligned_cols=90 Identities=20% Similarity=0.308 Sum_probs=77.5
Q ss_pred CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (626)
Q Consensus 45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~ 124 (626)
++.||.|+++|+++. +|+.|+++ ...++.|.+|.+.+++||+++|.||++|+++.|.+++...|+....
T Consensus 158 ~~~gD~V~vd~~~~~-~g~~~~~~------~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l---- 226 (435)
T PRK01490 158 AENGDRVTIDFVGSI-DGEEFEGG------KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL---- 226 (435)
T ss_pred CCCCCEEEEEEEEEE-CCEECcCC------CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC----
Confidence 689999999999996 89888755 3468999999999999999999999999999999998888876655
Q ss_pred CCCCCCCceEEEEEEeeeeccccccc
Q 006908 125 PSTFPKDEELHFEIEMIDFAKAKIIA 150 (626)
Q Consensus 125 ~~~i~~~~~lv~~v~l~~~~~~~~v~ 150 (626)
+|.++.|.|+|.++.....+.
T Consensus 227 -----agk~~~f~v~v~~V~~~~~pe 247 (435)
T PRK01490 227 -----AGKEATFKVTVKEVKEKELPE 247 (435)
T ss_pred -----CCCeEEEEEEEEEeccCCCCC
Confidence 489999999999997554433
No 97
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.52 E-value=1.9e-07 Score=75.73 Aligned_cols=66 Identities=24% Similarity=0.405 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 445 ~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d-------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
..+.+++|+|.+|..+|+|++|+.++++++.+. |..+.+++++|.++..+|++++|++.|++|+++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456799999999999999999999999999762 223779999999999999999999999999986
No 98
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3e-07 Score=98.60 Aligned_cols=90 Identities=21% Similarity=0.346 Sum_probs=75.8
Q ss_pred CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908 45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124 (626)
Q Consensus 45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~ 124 (626)
++.||+|+|+|.++ .||..|.+ |....+.+.||+|++||||+.+|.||++|++..|.|.....|....+
T Consensus 158 a~~gD~v~IDf~g~-iDg~~feg------g~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L---- 226 (441)
T COG0544 158 AENGDRVTIDFEGS-VDGEEFEG------GKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL---- 226 (441)
T ss_pred cccCCEEEEEEEEE-EcCeeccC------ccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh----
Confidence 68999999999997 59988873 35678999999999999999999999999999887776677776665
Q ss_pred CCCCCCCceEEEEEEeeeeccccccc
Q 006908 125 PSTFPKDEELHFEIEMIDFAKAKIIA 150 (626)
Q Consensus 125 ~~~i~~~~~lv~~v~l~~~~~~~~v~ 150 (626)
+|++..|.|+|..+.....+.
T Consensus 227 -----aGK~a~F~V~vkeVk~~elpE 247 (441)
T COG0544 227 -----AGKEATFKVKVKEVKKRELPE 247 (441)
T ss_pred -----CCCceEEEEEEEEEeecCCCC
Confidence 389999999999997554333
No 99
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.51 E-value=3.4e-06 Score=82.06 Aligned_cols=125 Identities=24% Similarity=0.344 Sum_probs=95.7
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.+..+...|..+|..|+|.+|+..|++.+.. .|.. .....+.+.+|.++++.++|..|+..+.+.+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~----~P~s--------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR----YPNS--------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----TTS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----CCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999984 3332 223457889999999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHHH
Q 006908 477 NPAHV---KGLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQEVE 533 (626)
Q Consensus 477 dp~~~---ka~~~~g~a~~~lg-----------~~~eA~~~~~kAl~l~P~~~--~~~~~~l~~l~~~~~~~~ 533 (626)
.|++. .|+|.+|.+++.+. ...+|+..|+..+..-|++. .+++..+..|+..+.+.+
T Consensus 72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 99874 59999999987753 24589999999999999863 456666666666665544
No 100
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=3.6e-07 Score=95.66 Aligned_cols=124 Identities=22% Similarity=0.234 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc---CCHHHHH
Q 006908 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---GECRKSI 467 (626)
Q Consensus 391 ~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl---~~~~~A~ 467 (626)
+-++.+.++..+++||..|-.+.+..|+..|.+++.. .|. ...+|.|+|.+++|. ++...|+
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~----~~~-----------~~~~l~nraa~lmkRkW~~d~~~Al 431 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY----VPD-----------AIYLLENRAAALMKRKWRGDSYLAL 431 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh----ccc-----------hhHHHHhHHHHHHhhhccccHHHHH
Confidence 5678889999999999999999999999999999983 332 356999999999996 4788999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (626)
Q Consensus 468 ~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~ 530 (626)
.+|..||++||...||||+++.|+..++++.+|+.+...+....|.+ .+.......+.+.++
T Consensus 432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd-~a~~~~v~~l~rDi~ 493 (758)
T KOG1310|consen 432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD-VARQNFVLCLPRDIS 493 (758)
T ss_pred HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh-hhhhhhhhccccchH
Confidence 99999999999999999999999999999999999888777777754 333333333333333
No 101
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.49 E-value=1.6e-06 Score=101.22 Aligned_cols=112 Identities=12% Similarity=0.182 Sum_probs=99.2
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..+...|..+.+.|++.+|+..|++++. +.|.+. .++.++|.++...+++.+|+..+.+++..+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~----~~P~~~-----------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALS----LEPQND-----------DYQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCH-----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34477888899999999999999999999 677763 467899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
|+++. ++.+|.++...|++++|+..|+++++++|++ ..+...+..+.
T Consensus 114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~-~~~~~~la~~l 160 (765)
T PRK10049 114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT-QQYPTEYVQAL 160 (765)
T ss_pred CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 99999 9999999999999999999999999999998 55555555443
No 102
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=5.8e-07 Score=88.96 Aligned_cols=94 Identities=20% Similarity=0.312 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (626)
Q Consensus 451 ~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~ 530 (626)
-+-|.=+++.++|.+|+..|++||+++|.|+--|.+||.||.+||+|+.|+++++.|+.+||.. ..+.--|..+.-.+.
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~g 163 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHccC
Confidence 3457778899999999999999999999999999999999999999999999999999999986 556666666665555
Q ss_pred HHHHHHHHHHHccccC
Q 006908 531 EVESKARKQFKGLFDK 546 (626)
Q Consensus 531 ~~~~~~~~~~~~~~~~ 546 (626)
+..++... |++.+.-
T Consensus 164 k~~~A~~a-ykKaLel 178 (304)
T KOG0553|consen 164 KYEEAIEA-YKKALEL 178 (304)
T ss_pred cHHHHHHH-HHhhhcc
Confidence 55555544 5555443
No 103
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.46 E-value=2.8e-06 Score=103.82 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=97.3
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHH-------------------------------Hhhhhh
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV-------------------------------FVGKRN 447 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~-------------------------------~~~~~~ 447 (626)
..+...|..++..|++++|+..|++++. +.|.+..-... ...+..
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~----~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALR----MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 4556789999999999999999999998 55554321100 011223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~ 523 (626)
..+.++|.++...+++.+|+..|.++++++|+++.+++++|.+|..+|++++|+..|+++++++|++ ..+...+.
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-~~~~~a~a 536 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-PEQVYAYG 536 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999999999987 45554443
No 104
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.45 E-value=6.3e-07 Score=91.81 Aligned_cols=120 Identities=23% Similarity=0.270 Sum_probs=95.8
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..+...|..+.+.|++++|+..|++|++ +.|++. .+..+++.++..+|++.++...+.......
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~P~~~-----------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALE----LDPDDP-----------DARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH----H-TT-H-----------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCH-----------HHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 45567889999999999999999999999 788773 367788999999999999999998888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE 533 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (626)
|.++..+..+|.++..+|++++|+.+|+++++.+|+| +.+...+..+........
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-PLWLLAYADALEQAGRKD 265 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT------
T ss_pred cCHHHHHHHHHHHhccccccccccccccccccccccc-cccccccccccccccccc
Confidence 8888899999999999999999999999999999997 677777776654444433
No 105
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.44 E-value=5.4e-07 Score=70.28 Aligned_cols=64 Identities=17% Similarity=0.400 Sum_probs=56.7
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ 481 (626)
.+|..+++.|+|++|+..|++++. ..|.+ ..+++.+|.|++.+|++.+|+..+.+++.++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK----QDPDN-----------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC----CSTTH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 578899999999999999999999 66665 45899999999999999999999999999999875
No 106
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2e-08 Score=95.72 Aligned_cols=275 Identities=17% Similarity=0.149 Sum_probs=156.5
Q ss_pred ccEEEEEeecCCC-cCCCCCCCeEEEEEEEEeC--CCcEEEec-CCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908 153 FGVVKKVINEGQG-WETPRAPYEVKAWISAKTG--DGKLILSH-REGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV 228 (626)
Q Consensus 153 ~~v~~~i~~~G~g-~~~~~~g~~V~v~y~~~~~--~g~~~~s~-~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v 228 (626)
.|+.|.|+..|.| .....+|..|+|||..... .++++|.| .-|.|+.+++|.---.|-||..|.+|+++|.+.|+|
T Consensus 10 ~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~~ 89 (329)
T KOG0545|consen 10 EGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFWC 89 (329)
T ss_pred hhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhhh
Confidence 4788999999998 3556789999999998654 47788866 479999999999999999999999999999999998
Q ss_pred eCCcc--CCCCCCCCCCCcceEEEEEEEeeEEeeeeecCCCcEEEEEeeCCCCCCCCCCCCCCCeEE--EEEEEEEecCC
Q 006908 229 TSQYL--TPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLC--VHYKGMLLNEE 304 (626)
Q Consensus 229 ~~~~~--~g~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~dg~v~k~il~~G~G~~~~~~p~~~~~V~--v~y~~~~~~~~ 304 (626)
....- |. .+ -++ .+|+. . |..|..+...-+-+. +.|.|.-.
T Consensus 90 d~~~~vqYP-----fv-----------sks---LRdia-----------~--GK~p~e~~~H~Cg~a~m~~~~glGy--- 134 (329)
T KOG0545|consen 90 DTIHTVQYP-----FV-----------SKS---LRDIA-----------Q--GKDPTEWHRHCCGLANMFAYHGLGY--- 134 (329)
T ss_pred hhhheeech-----hH-----------HHH---HHHHh-----------c--CCCcchhhhhhhhhHHHHHhcCCCh---
Confidence 65421 21 00 000 11211 1 332211111112222 22322100
Q ss_pred CcEEEeeccCCCCCCEEEEcCCCcchhhHHHHhhcCCCCCEEEEEecCC-------CccccCCCC-CCCCCCcceeeeee
Q 006908 305 KKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD-------YAYDKFLRP-ANVPEGAHIQWEIE 376 (626)
Q Consensus 305 g~~~~dt~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~~~i~~~-------~ayg~~~~~-~~ip~~~~l~~~ve 376 (626)
+-. |.-. ..++|+.|++-- |..-..+-...|.|.+.-... ..-|..-+. ..... +.-.|.=.
T Consensus 135 -edL-DeL~-knPqpL~Fviel------lqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykE-A~~~YreA 204 (329)
T KOG0545|consen 135 -EDL-DELQ-KNPQPLVFVIEL------LQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKE-ASSKYREA 204 (329)
T ss_pred -hhH-HHHh-hCCCceEeehhh------hhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHH-HHHHHHHH
Confidence 000 1111 247888886532 221111212222221111000 000000000 00000 00111101
Q ss_pred ec---ccccCCCCCCCChhhHHH-HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHH
Q 006908 377 LL---GFEKPKDWTGLSFDGIMD-EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 452 (626)
Q Consensus 377 l~---~~~~~~~~~~~~~~e~~~-~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~N 452 (626)
+. .+...+.+++-.|-+.-. ....+.+...++.+.|+|-++++..+..|. ..|.+ ..+|+.
T Consensus 205 i~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~----~~~~n-----------vKA~fr 269 (329)
T KOG0545|consen 205 IICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR----HHPGN-----------VKAYFR 269 (329)
T ss_pred HHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh----cCCch-----------HHHHHH
Confidence 11 111111111111122111 233566788899999999999999999998 66665 679999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006908 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487 (626)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~ 487 (626)
+|.++.-.-+..+|.+++..+|+++|.-+.+.-|-
T Consensus 270 RakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrE 304 (329)
T KOG0545|consen 270 RAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRE 304 (329)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 99999999999999999999999999766655443
No 107
>PLN02789 farnesyltranstransferase
Probab=98.41 E-value=3.4e-06 Score=87.52 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=93.2
Q ss_pred hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Q 006908 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYR 486 (626)
Q Consensus 408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-~~~~A~~~~~~aL~~dp~~~ka~~~ 486 (626)
+...+++++|+..+.++|. ++|.+ .++|++++.|+.+++ .+.+|+..+.+++..+|++..+|+.
T Consensus 47 l~~~e~serAL~lt~~aI~----lnP~~-----------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIR----LNPGN-----------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 4566789999999999999 67766 579999999999999 6899999999999999999999999
Q ss_pred HHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908 487 RGMAYMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE 531 (626)
Q Consensus 487 ~g~a~~~lg~~--~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~ 531 (626)
|+.++..+++. ++++..++++++++|.| -.++.....+...+..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkN-y~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKN-YHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhhh
Confidence 99999999974 78999999999999998 4677666665554443
No 108
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.40 E-value=4.2e-06 Score=78.78 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=89.3
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH-- 480 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~-- 480 (626)
.+.+.+|-...|..+...+...++ ... ....+.+++++|.++..+++|++|+..+.+++.+.|+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~----~~~---------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~ 70 (168)
T CHL00033 4 SQRNDNFIDKTFTIVADILLRILP----TTS---------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD 70 (168)
T ss_pred ccccccccccccccchhhhhHhcc----CCc---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh
Confidence 356777877788888877755544 222 12246789999999999999999999999999997653
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 481 -VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 481 -~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
+.+|+++|.++..+|++++|+..|++|+.++|.+ ......+..+..
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la~i~~ 117 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-PQALNNMAVICH 117 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHH
Confidence 4589999999999999999999999999999987 456666666554
No 109
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.40 E-value=3.8e-06 Score=99.25 Aligned_cols=114 Identities=25% Similarity=0.406 Sum_probs=93.5
Q ss_pred HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
..+..+...|..++..|+|++|+..|.+++. ..|.+ ..++..+|.+++..++|.+|+..+.+++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALA----IDPRS-----------LYAKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------hhhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3466778899999999999999999999998 55554 34678888888888999999999998888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (626)
Q Consensus 476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l 525 (626)
.+|.+..+++.+|.++...|++++|+..|++++.++|.+ ..+...+..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~ 236 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATI 236 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Confidence 888888888888988888899999999999998888886 4444444443
No 110
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=1.9e-06 Score=88.69 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=98.5
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..+.++||..|..|++++|+..|+.||+. ......+++|+|..+-++|+.++|+.+|-+.-.+-
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~n---------------dasc~ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNN---------------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcC---------------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 446778999999999999999999999981 11234578999999999999999999999887777
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
-+|+..++.++++|..+.+..+|+++|.+|..+-|++ +.+...|..|.
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~d-p~ilskl~dly 602 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND-PAILSKLADLY 602 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC-HHHHHHHHHHh
Confidence 7899999999999999999999999999999999987 67777776664
No 111
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.39 E-value=3.6e-06 Score=77.71 Aligned_cols=99 Identities=28% Similarity=0.325 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHH
Q 006908 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG----------ECRKSIEACNKVLDANPAHVKG 483 (626)
Q Consensus 414 ~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~----------~~~~A~~~~~~aL~~dp~~~ka 483 (626)
|+.|.+.|+.... .+|.+. ..++|-|.+++.+. .+.+|+.-+++||.++|+...|
T Consensus 7 FE~ark~aea~y~----~nP~Da-----------dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYA----KNPLDA-----------DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHH----H-TT-H-----------HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHH----hCcHhH-----------HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 6778888888777 577763 35566666665553 4678899999999999999999
Q ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 484 LYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 484 ~~~~g~a~~~lg~-----------~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
++.+|+||..++. |++|..+|++|..++|+| ...+..|+...+.
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~ka 126 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHhh
Confidence 9999999998765 789999999999999998 5777777776543
No 112
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.39 E-value=6.1e-06 Score=67.43 Aligned_cols=84 Identities=27% Similarity=0.435 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
+++++|.+++..+++.+|+..+.+++...|.+..+++.+|.++...+++++|+..|++++.+.|.+ ..+...+..+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999987 4556566655544
Q ss_pred HHHHH
Q 006908 529 RQEVE 533 (626)
Q Consensus 529 ~~~~~ 533 (626)
..+..
T Consensus 81 ~~~~~ 85 (100)
T cd00189 81 LGKYE 85 (100)
T ss_pred HHhHH
Confidence 44433
No 113
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.38 E-value=2.9e-06 Score=92.21 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=113.8
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
+..+..++..|..|...++|.+|+..|++|+.++..+...+ +...+.++.|||..|.+.|+|.+|..+|.+|+
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 44566666799999999999999999999999887665554 45668899999999999999999999999999
Q ss_pred HhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006908 475 DAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD-----KSS--EPDATAALSKLKKQRQEVESKARKQ 539 (626)
Q Consensus 475 ~~d--------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~-----P~~--~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (626)
++- |.-+..+...+..+...+++++|+..|++++++- ++| ...+..+|..+.....+..+.. .+
T Consensus 311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~-~~ 389 (508)
T KOG1840|consen 311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE-EL 389 (508)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH-HH
Confidence 774 2336688999999999999999999999999872 222 2456777777776666555544 34
Q ss_pred HHccccC
Q 006908 540 FKGLFDK 546 (626)
Q Consensus 540 ~~~~~~~ 546 (626)
+++....
T Consensus 390 ~k~ai~~ 396 (508)
T KOG1840|consen 390 YKKAIQI 396 (508)
T ss_pred HHHHHHH
Confidence 5554444
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=6.7e-06 Score=81.77 Aligned_cols=125 Identities=14% Similarity=0.169 Sum_probs=98.7
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc--------CCHHHHHHHH
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------GECRKSIEAC 470 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl--------~~~~~A~~~~ 470 (626)
..+...|..+++.|+|++|+..|+++++ ..|.+.. ...+++++|.|++++ +++..|+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIR----LHPNHPD--------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 4567789999999999999999999999 5555422 123678899999887 8899999999
Q ss_pred HHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHH
Q 006908 471 NKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSS--EPDATAALSKLKKQRQE 531 (626)
Q Consensus 471 ~~aL~~dp~~~ka~-----------------~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~--~~~~~~~l~~l~~~~~~ 531 (626)
.+++..+|.+..++ +.+|..++..|++.+|+..|++++...|++ ...++..+..+.....+
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 99999999986432 467889999999999999999999998864 23566666666655555
Q ss_pred HHHH
Q 006908 532 VESK 535 (626)
Q Consensus 532 ~~~~ 535 (626)
..+.
T Consensus 219 ~~~A 222 (235)
T TIGR03302 219 KDLA 222 (235)
T ss_pred HHHH
Confidence 4443
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=3.9e-06 Score=76.47 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
..+-+|.-++..|++++|...|.-+..+||.++..||++|.|+..+|+|++|+..|.+|+.++|++ +....++..+.-.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHH
Confidence 456688999999999999999999999999999999999999999999999999999999999987 6777777777665
Q ss_pred HHHHHHH
Q 006908 529 RQEVESK 535 (626)
Q Consensus 529 ~~~~~~~ 535 (626)
..+....
T Consensus 116 lG~~~~A 122 (157)
T PRK15363 116 CDNVCYA 122 (157)
T ss_pred cCCHHHH
Confidence 5544433
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.37 E-value=3.5e-06 Score=89.18 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~ 529 (626)
+...|..++..++|..|+..|.+||+++|+++.+|+++|.+|..+|++++|+.+|++|+.++|++ ..+...+..+...+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 45578999999999999999999999999999999999999999999999999999999999997 56776766665555
Q ss_pred HHHHH
Q 006908 530 QEVES 534 (626)
Q Consensus 530 ~~~~~ 534 (626)
.+...
T Consensus 84 g~~~e 88 (356)
T PLN03088 84 EEYQT 88 (356)
T ss_pred CCHHH
Confidence 44443
No 117
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.36 E-value=7.9e-06 Score=87.61 Aligned_cols=114 Identities=21% Similarity=0.219 Sum_probs=93.1
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..+...|..+++.|++++|+..|.+++. ..|.. ..+++++|.++.++|++.+|+..+.+++..+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALA----ADPQC-----------VRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHh----HCcCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 33456778888899999999999999998 44443 3478889999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 478 PAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 478 p~~-~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
|.+ ..++..++.+|..+|++++|+..|+++++++|++ ..+ ..+..+...
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~-~~la~~~~~ 294 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLL-LALAQLLEE 294 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHH-HHHHHHHHH
Confidence 877 4678899999999999999999999999999986 333 444444333
No 118
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.36 E-value=5.8e-06 Score=97.68 Aligned_cols=128 Identities=14% Similarity=0.238 Sum_probs=102.6
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
.+...|..++..|+|++|+..|.+++. ..|.+ ..+.+++.++.++|++.+|+..+.+++..+|+
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALK----RAPSS------------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCc------------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 345578888899999999999999998 44443 35678999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 006908 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546 (626)
Q Consensus 480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 546 (626)
+..+++.+|.++..+|++++|+..|+++++.+|++ ..+...+..+...... .+....+.+.+..
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~--~~A~~~~~~~~~~ 832 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN-AVVLNNLAWLYLELKD--PRALEYAEKALKL 832 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCc--HHHHHHHHHHHhh
Confidence 99999999999999999999999999999999987 5677777666555444 2244455555443
No 119
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=1.7e-06 Score=86.07 Aligned_cols=111 Identities=20% Similarity=0.332 Sum_probs=89.4
Q ss_pred hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC
Q 006908 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP---AH 480 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp---~~ 480 (626)
.|.-+|-.++.+.|+++|++.|. ..-.+ ..+++|+|.|++-.++|+-++..+.+|+...- .-
T Consensus 330 ia~~yfY~~~PE~AlryYRRiLq----mG~~s-----------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 330 IAVGYFYDNNPEMALRYYRRILQ----MGAQS-----------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred eeeccccCCChHHHHHHHHHHHH----hcCCC-----------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence 34556666667777777777666 22223 24899999999999999999999999997643 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~ 530 (626)
+..||++|.+....|++.-|..+|+-||..||++ .++..+|..+..+..
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLAVLAARSG 443 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHHHHHhhcC
Confidence 6789999999999999999999999999999998 678888888765443
No 120
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.33 E-value=6.1e-06 Score=81.35 Aligned_cols=106 Identities=16% Similarity=0.277 Sum_probs=92.4
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..+.+.|-.+++.|+|..|...|..-+..++. + .....+++-||.|++.+|+|.+|...|..+..-.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~----s--------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~ 208 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPN----S--------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY 208 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----C--------cccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence 344788999999999999999999999995443 2 1224478889999999999999999999999998
Q ss_pred CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 478 PAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 478 p~~~---ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
|.++ .++|.+|.+...+|+.++|.+.|+++++--|+..
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 8774 5799999999999999999999999999999973
No 121
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.32 E-value=2.6e-06 Score=92.14 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=72.9
Q ss_pred CCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcce
Q 006908 168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE 247 (626)
Q Consensus 168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~~ 247 (626)
.++.||.|+++|++.. +|..++++. +.++.|.+|.+.+++||+++|.||++|++++|.++....|+... -++.+
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~-~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~----~~gk~ 219 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGK-AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE----LAGKE 219 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCC-CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc----CCCCe
Confidence 5788999999999954 888887653 58999999999999999999999999999999999666665332 26789
Q ss_pred EEEEEEEeeEEe
Q 006908 248 VHFEVELVHLIQ 259 (626)
Q Consensus 248 l~~~v~l~~~~~ 259 (626)
+.|+|+|+++.+
T Consensus 220 ~~f~v~i~~I~~ 231 (408)
T TIGR00115 220 ATFKVTVKEVKE 231 (408)
T ss_pred EEEEEEEEEecc
Confidence 999999999853
No 122
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.32 E-value=7e-06 Score=95.97 Aligned_cols=101 Identities=11% Similarity=0.081 Sum_probs=93.6
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp 478 (626)
..+...|..+...|++++|+..|++++. ..|.+ ..+++++|.++..+|++.+|+..+++++.++|
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~----~~P~n-----------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAY----NAPGN-----------QGLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 3445678888899999999999999999 67776 35899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
++..+++.+|.++..+++|++|.+.++++++..|++
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999998
No 123
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=7.7e-06 Score=81.60 Aligned_cols=103 Identities=21% Similarity=0.329 Sum_probs=91.6
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVL 474 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~---~~~~A~~~~~~aL 474 (626)
++.+-..|..++..|++..|...|.+|++ +.|++.+ ++.-+|.+++... .-.++...+.++|
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n~~-----------~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALR----LAGDNPE-----------ILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCCHH-----------HHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 55667799999999999999999999999 7888744 6666777776654 4788999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
.+||.|+.+++.+|..++..|+|.+|+..+++.|.+.|.+.
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999874
No 124
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.29 E-value=4.7e-06 Score=91.46 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=92.7
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH--HHHHHHH
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE--ACNKVLD 475 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~--~~~~aL~ 475 (626)
+..+...|..+..+|++.+|...|..|+. ++|++ ..+..-+|.|+++.|+..-|.. ....+++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~h-----------v~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDH-----------VPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCC-----------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 45677889999999999999999999999 78877 4577779999999999888888 9999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+||.|.+|||.+|.++..+|+.++|..+|..|+++++.+
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999876
No 125
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.29 E-value=5.2e-06 Score=76.14 Aligned_cols=97 Identities=21% Similarity=0.352 Sum_probs=62.5
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp 478 (626)
......|..++..|+|++|+..|+.++. ..++. .+...+.+++|.|++.+++|++|+..+..+ .-.+
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~----~~~d~--------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~ 115 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALA----NAPDP--------ELKPLARLRLARILLQQGQYDEALATLQQI-PDEA 115 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcc
Confidence 3444567777777777777777777776 22211 223446667777777777777777777552 2233
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (626)
Q Consensus 479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl 508 (626)
-.+.++..+|.+|...|++++|+..|++||
T Consensus 116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 345566677777777777777777777764
No 126
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.28 E-value=1.8e-06 Score=67.87 Aligned_cols=67 Identities=27% Similarity=0.397 Sum_probs=58.1
Q ss_pred hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006908 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487 (626)
Q Consensus 408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~ 487 (626)
+++.|+|++|+..|++++. ..|.+ ..+++++|.||+++|++++|...+.+++..+|+++..+.-+
T Consensus 1 ll~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ----RNPDN-----------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH----HTTTS-----------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4678999999999999999 67776 45888999999999999999999999999999987777666
Q ss_pred HH
Q 006908 488 GM 489 (626)
Q Consensus 488 g~ 489 (626)
++
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 127
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.28 E-value=2.2e-06 Score=69.44 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=61.1
Q ss_pred HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
..+..+...|..++..|+|++|+..|++|+.......+ + ....+.++.|+|.|+..+|++++|+.++.++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-D-------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-H-------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-C-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778899999999999999999999999997443322 1 233478999999999999999999999999987
Q ss_pred h
Q 006908 476 A 476 (626)
Q Consensus 476 ~ 476 (626)
+
T Consensus 75 i 75 (78)
T PF13424_consen 75 I 75 (78)
T ss_dssp H
T ss_pred h
Confidence 6
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=9.2e-06 Score=86.74 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
.++.-||..|+-.++|++|+.+|+.||..+|++..-|.|+|-++..-.+.++|+..|++||+|.|.. ..++.+|.....
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~m 509 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCM 509 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhh
Confidence 4678899999999999999999999999999999999999999999999999999999999999997 578889988877
Q ss_pred HHHHHHHHHHHHHH
Q 006908 528 QRQEVESKARKQFK 541 (626)
Q Consensus 528 ~~~~~~~~~~~~~~ 541 (626)
-+..++++.+....
T Consensus 510 NlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLE 523 (579)
T ss_pred hhhhHHHHHHHHHH
Confidence 77777776655543
No 129
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.24 E-value=2.4e-05 Score=87.43 Aligned_cols=128 Identities=20% Similarity=0.303 Sum_probs=97.2
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHH-----------------------hhhhhHHHHHH
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF-----------------------VGKRNLLHLNV 453 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~-----------------------~~~~~~~~~Nl 453 (626)
.+..+..+||.+|.+|++++|...+..+|+ ..|.+..-..++ .+--...|..+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk----qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIK----QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 477888999999999999999999999998 555554322110 00011355666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (626)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~ 530 (626)
|.-..+++++..|+-+|++||.++|.+.+.+++++..|.++|++..|...|.+++.++|. .+....+..+....+
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~--~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP--VDIERIEDLIRRVAH 288 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc--hhHHHHHHHHHHHHH
Confidence 777777888999999999999999999999999999999999999999999999999984 345555555544333
No 130
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=2.8e-06 Score=87.48 Aligned_cols=97 Identities=19% Similarity=0.343 Sum_probs=89.0
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k 482 (626)
+.||.+|++.+|.+|+++|+.||...++++ ..+++.+++|+|..+.++|.|..|+..|..+++..| |.+
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsin----------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p-n~~ 310 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSIN----------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP-NFI 310 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccc----------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc-cHH
Confidence 689999999999999999999999666553 456788999999999999999999999999999998 778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 483 GLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
+-|++-.|++..|+-+.-.+.|++.+.+
T Consensus 311 a~~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 311 AALNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred hhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence 8899999999999999999999999876
No 131
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.22 E-value=2e-05 Score=69.35 Aligned_cols=98 Identities=17% Similarity=0.136 Sum_probs=84.1
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
.+.+.|..+-..|+.++|+.+|++|+. ..... .....++.++|.++..+|++++|+..+++++.-.|+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~----~gL~~--------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALA----AGLSG--------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCc--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 456788888899999999999999998 22222 123458889999999999999999999999999887
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 480 ---HVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 480 ---~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
+....+.++.++..+|++++|+..+-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888899999999999999999988875
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.20 E-value=1.7e-05 Score=69.35 Aligned_cols=98 Identities=23% Similarity=0.332 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHH
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAAL 522 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~--~~~~~~l 522 (626)
..++++|.++++.++|.+|+..|.+++..+|++ ..+++.+|.++...+++++|+..|++++..+|++. ..+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 367889999999999999999999999999876 67999999999999999999999999999998852 3455555
Q ss_pred HHHHHHHHHHHHHHHHHHHccccC
Q 006908 523 SKLKKQRQEVESKARKQFKGLFDK 546 (626)
Q Consensus 523 ~~l~~~~~~~~~~~~~~~~~~~~~ 546 (626)
..+........+.. ..+......
T Consensus 83 ~~~~~~~~~~~~A~-~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAK-ATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHH-HHHHHHHHH
Confidence 55554444333322 344444433
No 133
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.19 E-value=1.3e-05 Score=75.83 Aligned_cols=82 Identities=16% Similarity=0.274 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006908 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 522 (626)
Q Consensus 446 ~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l 522 (626)
.+.+++++|.++...|+|.+|+.+|.+++.+.|+. +.+++++|.++..+|++++|+..|++|+.++|.+ ......+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHH
Confidence 46689999999999999999999999999987653 5799999999999999999999999999999987 5555555
Q ss_pred HHHHHH
Q 006908 523 SKLKKQ 528 (626)
Q Consensus 523 ~~l~~~ 528 (626)
..+...
T Consensus 113 g~~~~~ 118 (172)
T PRK02603 113 AVIYHK 118 (172)
T ss_pred HHHHHH
Confidence 555433
No 134
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.19 E-value=7.3e-06 Score=65.35 Aligned_cols=70 Identities=26% Similarity=0.455 Sum_probs=61.9
Q ss_pred hchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 006908 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL 484 (626)
Q Consensus 405 Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~ 484 (626)
.+.++++++|+.|+..+++++. +.|.+ ..++.++|.|++++|+|.+|+.+++++++..|++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE----LDPDD-----------PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH----hCccc-----------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3568899999999999999999 67766 45899999999999999999999999999999998877
Q ss_pred HHHHH
Q 006908 485 YRRGM 489 (626)
Q Consensus 485 ~~~g~ 489 (626)
.-++.
T Consensus 67 ~~~a~ 71 (73)
T PF13371_consen 67 ALRAM 71 (73)
T ss_pred HHHHh
Confidence 66554
No 135
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.16 E-value=2.5e-05 Score=76.18 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=91.1
Q ss_pred hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka 483 (626)
.++.++..|+-+.++....+++. ..|.+. .++.-.+..++..|+|..|+..+.++..++|+++++
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~----~~~~d~-----------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~ 136 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI----AYPKDR-----------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA 136 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc----cCcccH-----------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence 44555555555555555555444 244442 244448889999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006908 484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQ 539 (626)
Q Consensus 484 ~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (626)
|.-+|.+|.++|++++|...|.+|+++.|++ +.+..+|.-..-.....+..++-.
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNE-PSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCC-chhhhhHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999987 677888776655544444444433
No 136
>PRK01490 tig trigger factor; Provisional
Probab=98.16 E-value=9.1e-06 Score=88.66 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=71.5
Q ss_pred CCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcce
Q 006908 168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE 247 (626)
Q Consensus 168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~~ 247 (626)
.++.||.|+++|++.. +|..|+++ ...++.|.+|.+.+++||+++|.||++|+++.|.++....|+... -++.+
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~-~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~----lagk~ 230 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGG-KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED----LAGKE 230 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCC-CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc----CCCCe
Confidence 4789999999999965 88877754 457899999999999999999999999999999987655554321 15789
Q ss_pred EEEEEEEeeEEe
Q 006908 248 VHFEVELVHLIQ 259 (626)
Q Consensus 248 l~~~v~l~~~~~ 259 (626)
+.|.|+|+++.+
T Consensus 231 ~~f~v~v~~V~~ 242 (435)
T PRK01490 231 ATFKVTVKEVKE 242 (435)
T ss_pred EEEEEEEEEecc
Confidence 999999999853
No 137
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.16 E-value=2e-05 Score=88.62 Aligned_cols=119 Identities=16% Similarity=0.189 Sum_probs=102.5
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..+.-.+|.+|-.|+|..+..++.-|+..-. ...+.+..++++|.||..+|+|++|..+|.+++..+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTE------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 34566788999999999999999999987321 123455678999999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908 478 PAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (626)
Q Consensus 478 p~~-~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~ 529 (626)
+++ .-+++.+|+.++..|+++.|+.+|++.++..|++ ......|..+....
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~-~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN-YETMKILGCLYAHS 389 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch-HHHHHHHHhHHHhh
Confidence 998 8899999999999999999999999999999998 67777777776555
No 138
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=5.7e-06 Score=78.00 Aligned_cols=132 Identities=21% Similarity=0.242 Sum_probs=109.8
Q ss_pred CCCCcceeeeeeecccccCCCCCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhh
Q 006908 365 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG 444 (626)
Q Consensus 365 ip~~~~l~~~vel~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~ 444 (626)
+|-..++.-+|-+..+...-....++.++ .|.-+.++|+.+=.-|-+..|..-|+++|. +.|.-
T Consensus 35 ~~~qp~lqqEV~iarlsqlL~~~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLa----i~P~m--------- 98 (297)
T COG4785 35 VPLQPTLQQEVILARMSQILASRALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALA----IRPDM--------- 98 (297)
T ss_pred ccCCccHHHHHHHHHHHHHHHhccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhh----cCCCc---------
Confidence 45454555555555444322223455554 588899999999999999999999999999 66654
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 445 ~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
..+++-+|.-+...|+|+.|.+.++.++++||.+--|+.+||.++.--|+|.-|.++|.+-..-||++
T Consensus 99 --~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 99 --PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred --HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence 45888899999999999999999999999999999999999999999999999999999999999986
No 139
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=7.7e-06 Score=87.90 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=67.8
Q ss_pred CCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe--CCccCCCCCCCCCCCcc
Q 006908 169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT--SQYLTPSPLMPVVEGCE 246 (626)
Q Consensus 169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~--~~~~~g~~~~~~ip~~~ 246 (626)
++.||.|+|+|.| ..||..|... ....+.|.+|+|++||||+.+|.||+.|+...|.|. .+|.-+.. .++
T Consensus 158 a~~gD~v~IDf~g-~iDg~~fegg-~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------aGK 229 (441)
T COG0544 158 AENGDRVTIDFEG-SVDGEEFEGG-KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------AGK 229 (441)
T ss_pred cccCCEEEEEEEE-EEcCeeccCc-cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------CCC
Confidence 8899999999999 6888877743 347799999999999999999999999999886544 44443322 568
Q ss_pred eEEEEEEEeeEEe
Q 006908 247 EVHFEVELVHLIQ 259 (626)
Q Consensus 247 ~l~~~v~l~~~~~ 259 (626)
+..|.|+|+.+..
T Consensus 230 ~a~F~V~vkeVk~ 242 (441)
T COG0544 230 EATFKVKVKEVKK 242 (441)
T ss_pred ceEEEEEEEEEee
Confidence 8999999999854
No 140
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.08 E-value=3e-05 Score=87.22 Aligned_cols=132 Identities=21% Similarity=0.305 Sum_probs=110.5
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
.+.+++.|..+|..|++..|...|.+|+..+.... +.++. .....+..+|+|.|+-.++++..|...|..++...
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~--n~de~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA--NKDEG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc--Ccccc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 55788999999999999999999999998643211 11111 23346789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK 535 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~ 535 (626)
|....||.|+|......+...+|...++.++.+|..| +.++..+..+..+..+....
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n-p~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN-PNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC-cHHHHHHHHHHHhhhhhccc
Confidence 9999999999977788899999999999999999987 88999999877666654433
No 141
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.08 E-value=3.5e-05 Score=83.97 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=88.1
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
...+...|..++.+|+|+.|+..|+.|++.+....... +........++|..|..+++|.+|+..|.+||.+-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-------hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-------HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34444589999999999999999999999764433322 33445566679999999999999999999999763
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 478 --------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 478 --------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
|.-+-++.++|.+|...|+|++|..++++|+++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI 312 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 445778999999999999999999999999988
No 142
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.08 E-value=5.7e-05 Score=64.43 Aligned_cols=107 Identities=20% Similarity=0.334 Sum_probs=81.9
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--- 477 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d--- 477 (626)
....|...++.|-|++|...|++|+..-..+.+...-+. ...-+-||.-|+.++.++|+|++++....++|.+-
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh---~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDH---DGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---H---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhccc---ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 345677788889999999999999997666555432211 22335689999999999999999999999999652
Q ss_pred ----C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 478 ----P----AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 478 ----p----~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
. .+..+.|++|.++..+|+.++|+..|++|-++
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 2 24778999999999999999999999998765
No 143
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=1.5e-05 Score=87.08 Aligned_cols=115 Identities=15% Similarity=0.191 Sum_probs=96.3
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
+.+-.|+..+.+++|.+|.++++.++. ++| +....|+++|.|.++++++..|..+|.+.+.++|+
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~----~np-----------lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLE----INP-----------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhh----cCc-----------cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 444556667788999999999999998 444 34568999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (626)
Q Consensus 480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~ 530 (626)
+..+|.+++.+|..+++-.+|...++.|++.+-.| -.++.+...+-....
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVG 601 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-Ceeeechhhhhhhcc
Confidence 99999999999999999999999999999998665 445555555444433
No 144
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=4.4e-05 Score=76.28 Aligned_cols=140 Identities=14% Similarity=0.190 Sum_probs=102.1
Q ss_pred CChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHH----------hcccCCCCChhHHHH---------------Hh
Q 006908 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR----------DFNHVNPQDDEEGKV---------------FV 443 (626)
Q Consensus 389 ~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~----------~l~~~~p~~~ee~~~---------------~~ 443 (626)
++++++ ...+.+.|..|...|-|+.|...|..... .|-.+-- .+.||+. ..
T Consensus 101 lT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ-~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 101 LTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ-ATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred CchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHcCCccch
Confidence 444443 44556677777777777777777765433 1100000 0011111 12
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (626)
Q Consensus 444 ~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~ 523 (626)
-..+.+|+-+|..+.-..+++.|+....+|++.||+++.|-.-+|.+++..|+|+.|++.++.+++.||+.-+.+...|.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 23467899999999999999999999999999999999999999999999999999999999999999987666776776
Q ss_pred HHHHHHHHH
Q 006908 524 KLKKQRQEV 532 (626)
Q Consensus 524 ~l~~~~~~~ 532 (626)
.+...+.+.
T Consensus 257 ~~Y~~lg~~ 265 (389)
T COG2956 257 ECYAQLGKP 265 (389)
T ss_pred HHHHHhCCH
Confidence 666555543
No 145
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.04 E-value=6.1e-05 Score=87.44 Aligned_cols=147 Identities=10% Similarity=0.008 Sum_probs=104.8
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhH-----------------HHHHh------hhhhHHHHHHH
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-----------------GKVFV------GKRNLLHLNVA 454 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee-----------------~~~~~------~~~~~~~~Nla 454 (626)
+.....++-..+++|+|..|+..|++++. ..|.+... ...+. +.....+..+|
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~----~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESK----AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 44666788888999999999999999998 44444210 00011 11123344457
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006908 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES 534 (626)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~ 534 (626)
.++..+|+|.+|+..|+++++.+|+++.+++-++.++..++++++|+..+++++.++|.+ ... ..+..+........+
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~-~~~-l~layL~~~~~~~~~ 187 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV-QNY-MTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch-HHH-HHHHHHHHhcchHHH
Confidence 799999999999999999999999999999999999999999999999999999999986 333 333334322222222
Q ss_pred HHHHHHHccccCCCCCc
Q 006908 535 KARKQFKGLFDKKPGEI 551 (626)
Q Consensus 535 ~~~~~~~~~~~~~~~~~ 551 (626)
.-..+++++...+...
T Consensus 188 -AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 188 -ALQASSEAVRLAPTSE 203 (822)
T ss_pred -HHHHHHHHHHhCCCCH
Confidence 4556777777665443
No 146
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.04 E-value=5.1e-05 Score=80.17 Aligned_cols=71 Identities=28% Similarity=0.374 Sum_probs=62.2
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
...+..+.+.|+.|++.|+|++|+..|++||. ++|++.+ ...+|+|+|.||.++|++++|+.++.+||
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~ae--------A~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDE--------AQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44677888999999999999999999999999 7887632 01469999999999999999999999999
Q ss_pred HhC
Q 006908 475 DAN 477 (626)
Q Consensus 475 ~~d 477 (626)
++.
T Consensus 140 els 142 (453)
T PLN03098 140 RDY 142 (453)
T ss_pred Hhc
Confidence 983
No 147
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.02 E-value=7.6e-06 Score=54.72 Aligned_cols=33 Identities=30% Similarity=0.632 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
+++|+++|.++..++++++|+.+|++|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456777777777777777777777777777775
No 148
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.0001 Score=77.71 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=90.3
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
...-.+...|..|+++.|...++..+. ..|+|. .++.-++..+++.++..+|++.+.+++.++|+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~----~~P~N~-----------~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~ 372 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA----AQPDNP-----------YYLELAGDILLEANKAKEAIERLKKALALDPN 372 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH----hCCCCH-----------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Confidence 334455556666666666666666555 566662 34455788888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV 532 (626)
Q Consensus 480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~ 532 (626)
..-..+++|++|++.|++.+|+..++..+.-+|++ +..+..|......+...
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-p~~w~~LAqay~~~g~~ 424 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-PNGWDLLAQAYAELGNR 424 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHhCch
Confidence 88888999999999999999999999999999987 78888888876655543
No 149
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.98 E-value=0.00011 Score=77.77 Aligned_cols=111 Identities=22% Similarity=0.162 Sum_probs=89.6
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHH--------------------HH------hhhhhHHHHH
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK--------------------VF------VGKRNLLHLN 452 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~--------------------~~------~~~~~~~~~N 452 (626)
+....+|..++..|++++|...+++++. ..|.+..-.. .+ ......++.+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLD----DYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 3344678889999999999999999988 3444331100 00 0111235568
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
+|.++..+|++.+|+..|.++++++|+++.++..+|.++...|++++|+..|++++.+.|.
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 8999999999999999999999999999999999999999999999999999999999875
No 150
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.95 E-value=0.0004 Score=63.53 Aligned_cols=112 Identities=19% Similarity=0.131 Sum_probs=85.6
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccC-CCC------ChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQ------DDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 470 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~-~p~------~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~ 470 (626)
...+...|......++...++..|.+++..+..- .+. -......+......+...++.++...|+|..|+..|
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3444556666677788999999999999865421 111 112334466677788889999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 471 ~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
.+++.++|-+-.+|..+-.+|..+|++.+|++.|+++..
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754
No 151
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=0.00011 Score=77.33 Aligned_cols=107 Identities=27% Similarity=0.316 Sum_probs=90.7
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k 482 (626)
..+..+++.+++.+|++.+++++. +.|.. ..+..|+|.++++.|++.+|+...+..+.-+|+++.
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~----l~P~~-----------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALA----LDPNS-----------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHh----cCCCc-----------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 467788899999999999999999 56654 458899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (626)
Q Consensus 483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l 525 (626)
.|..+|++|..+|+-.+|...+-.++.+.-.- ..+...+.+.
T Consensus 410 ~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~-~~A~~~l~~A 451 (484)
T COG4783 410 GWDLLAQAYAELGNRAEALLARAEGYALAGRL-EQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence 99999999999999988888888888877654 3344444433
No 152
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.92 E-value=1e-05 Score=54.20 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006908 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502 (626)
Q Consensus 469 ~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~ 502 (626)
+|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999973
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.88 E-value=0.00019 Score=79.43 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
.+|.-+|..+...|++++|...+++|+.++| ++.+|+.+|.++...|++++|++.|++|+.++|.+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4577788888899999999999999999999 68999999999999999999999999999999986
No 154
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.87 E-value=0.00011 Score=77.72 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=85.8
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp 478 (626)
..+...|..+...|++.+|...|++++. +.|.+ ..++.++|.+++.+|++++|+..+.+++...|
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALE----LNPDD-----------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 3444677788999999999999999999 66765 45788999999999999999999999999887
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908 479 AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (626)
Q Consensus 479 ~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P 512 (626)
.+ ...++.+|.++..+|++++|+..|++++...|
T Consensus 180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 43 24577899999999999999999999987776
No 155
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.86 E-value=5.8e-05 Score=77.25 Aligned_cols=123 Identities=19% Similarity=0.280 Sum_probs=88.3
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp 478 (626)
..+......+++.++++++...+.++... .. .+.+ ..++..+|.++.+.|++++|+.++.+||+++|
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~-----------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P 177 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEEL-PA-APDS-----------ARFWLALAEIYEQLGDPDKALRDYRKALELDP 177 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH--T----T------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhc-cC-CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 33444555677888999999999987751 11 1222 45788899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK 535 (626)
Q Consensus 479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~ 535 (626)
++..++..++.++...|++++|...+....+..|++ +.+...+..+...+.+..+.
T Consensus 178 ~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~-~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 178 DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD-PDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-CCHCHHHHHHHHHHT-HHHH
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-HHHHHHHHHHhccccccccc
Confidence 999999999999999999999999988888887765 45666777766666554443
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=97.86 E-value=0.00019 Score=76.07 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHH
Q 006908 413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---------GECRKSIEACNKVLDANPAHVKG 483 (626)
Q Consensus 413 ~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl---------~~~~~A~~~~~~aL~~dp~~~ka 483 (626)
....|+.+|.+|+..- .+.|.. +.+|.-+|.||+.+ .+-.+|...+.+|+++||.++.|
T Consensus 273 ~~~~Al~lf~ra~~~~-~ldp~~-----------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a 340 (458)
T PRK11906 273 SIYRAMTIFDRLQNKS-DIQTLK-----------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKI 340 (458)
T ss_pred HHHHHHHHHHHHhhcc-cCCccc-----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHH
Confidence 4677888999999310 044543 56777788887765 13567888888899999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908 484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (626)
Q Consensus 484 ~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l 525 (626)
++.+|.++...++++.|...|++|+.++|+. ..+......+
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~ 381 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIHSTDI-ASLYYYRALV 381 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhcCCcc-HHHHHHHHHH
Confidence 9999999999999999999999999999986 5566555553
No 157
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.85 E-value=3.2e-05 Score=51.53 Aligned_cols=34 Identities=35% Similarity=0.612 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+++|+++|.+++.+|+|++|+.+|++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678888888888888888888888888888864
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.81 E-value=0.001 Score=60.79 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (626)
Q Consensus 394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a 473 (626)
....+..........+..+++..+...+.+.+. ..|.. .......+.+|.+++..|+|++|+..+..+
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~----~~~~s--------~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~ 74 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAK----DYPSS--------PYAALAALQLAKAAYEQGDYDEAKAALEKA 74 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCC--------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445666777777777788899988888888777 33332 123457788999999999999999999999
Q ss_pred HHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 474 LDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 474 L~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
+...|+. ..+.+|+|.+++.+|+|++|+..++... ++...+.+...+..+...
T Consensus 75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~--~~~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP--DEAFKALAAELLGDIYLA 130 (145)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc--CcchHHHHHHHHHHHHHH
Confidence 9987654 4689999999999999999999997632 222223444444444433
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.00031 Score=72.07 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=86.5
Q ss_pred HHHHHHHhhhchhhcc-ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 396 DEAEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f~~-g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
..|..+...|..+... +++++|+.+|++|+.++.... .......++.++|.++.++++|.+|+..|.++.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3577788888888888 999999999999999765432 122345688999999999999999999999998
Q ss_pred HhCCC------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 475 DANPA------HVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 475 ~~dp~------~~k-a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
...-+ +++ .+++.+.|++..|++-.|...|++....+|..
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 75321 244 45688889999999999999999999999965
No 160
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.80 E-value=0.00043 Score=77.65 Aligned_cols=120 Identities=17% Similarity=0.242 Sum_probs=90.5
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP- 478 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp- 478 (626)
-++..+...-+.|++.+|+-+|.+||. ..|.+ ...+.+++..|.++|++..|...+.+++.++|
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~----~~p~n-----------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQ----ANPSN-----------WELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh----cCCcc-----------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 456677777788999999999999999 66665 56889999999999999999999999999999
Q ss_pred ---CCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006908 479 ---AHVKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKA 536 (626)
Q Consensus 479 ---~~~ka~-~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~ 536 (626)
....++ ++.++.+...++-+.|++.+..++...-+ .....-+..+....-..++-.
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~--~~~~ed~ni~ael~l~~~q~d 333 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD--EASLEDLNILAELFLKNKQSD 333 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc--cccccHHHHHHHHHHHhHHHH
Confidence 223444 45589999999999999999999984322 334444444444333333333
No 161
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.80 E-value=0.00035 Score=72.01 Aligned_cols=133 Identities=11% Similarity=0.222 Sum_probs=99.1
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccC----CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~----~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~ 472 (626)
+.......|..+|++++|..|+-.|..||+++... .|...+ ...+.....-+.-.+..||+++++.+-|+.+..+
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~-~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKAS-AEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCC-hhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 44445568889999999999999999999976532 121111 1112333344566799999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHH
Q 006908 473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV---DKSSEPDATAALSKLKKQRQ 530 (626)
Q Consensus 473 aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l---~P~~~~~~~~~l~~l~~~~~ 530 (626)
.|.++|.+..-|+|+|.|+..|.+|.+|-+.+--|.-+ +..+.+.+.+.+....+..-
T Consensus 254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqami 314 (569)
T PF15015_consen 254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQAMI 314 (569)
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887776544 44344555555555544433
No 162
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.80 E-value=0.0002 Score=83.21 Aligned_cols=107 Identities=10% Similarity=0.108 Sum_probs=83.7
Q ss_pred hchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 006908 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL 484 (626)
Q Consensus 405 Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~ 484 (626)
|..+...|+|++|+..|++++. ..|.++ .++.-++.++..++++.+|+..+.+++..+|.+...
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~----~dP~n~-----------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~- 172 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLK----KDPTNP-----------DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY- 172 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh----hCCCCH-----------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence 4456677999999999999999 788773 355678999999999999999999999999985444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 485 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 485 ~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
..++..+..++++.+|++.|+++++++|++ .++...+-.+-..
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~~~P~n-~e~~~~~~~~l~~ 215 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVRLAPTS-EEVLKNHLEILQR 215 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 444555555778877999999999999998 4444444444333
No 163
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.77 E-value=3.9e-05 Score=51.21 Aligned_cols=33 Identities=18% Similarity=0.430 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
.+|+|+|.||+.+++|.+|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 479999999999999999999999999999974
No 164
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.76 E-value=0.00033 Score=80.88 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=69.7
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp 478 (626)
..+-...+.+...+++++|+..+..++. .+|.. ..+|+-+|..++..+++..|... .++.+-+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~-----------i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~ 94 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLK----EHKKS-----------ISALYISGILSLSRRPLNDSNLL--NLIDSFS 94 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcc-----------eehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence 3444555666677888888888888887 44443 34555556666665555554443 4443333
Q ss_pred CCH-------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 479 AHV-------------------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 479 ~~~-------------------ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
.+. .|+|.+|.||-++|++++|.+.|+++|+++|+| +.+.++++-...
T Consensus 95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n-~~aLNn~AY~~a 161 (906)
T PRK14720 95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN-PEIVKKLATSYE 161 (906)
T ss_pred cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc-HHHHHHHHHHHH
Confidence 333 677777777777777777777777777777776 455555554433
No 165
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.73 E-value=0.0011 Score=71.68 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCCh----------------hHH-HHHh------hh-hhHH
Q 006908 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD----------------EEG-KVFV------GK-RNLL 449 (626)
Q Consensus 394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~----------------ee~-~~~~------~~-~~~~ 449 (626)
+...+.....+|-..+..|+|..|.+...++.+ ..|... +.. ..+. +. ...+
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~----~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~ 155 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNAD----HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILV 155 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHH
Confidence 455677778888888899999999999888877 333220 000 0000 00 0012
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~ 511 (626)
...++..++..++++.|+..++++++..|+++.+++.++.++...|+|++|+..+.+.++..
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 22335555555666666666666666666666666666666666666666666555555543
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=6.7e-05 Score=61.69 Aligned_cols=76 Identities=25% Similarity=0.410 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006908 460 LGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR 537 (626)
Q Consensus 460 l~~~~~A~~~~~~aL~~dp~--~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~ 537 (626)
.++|+.|+..++++++.+|. +...++++|.||+.+|+|++|+..+++ ++.+|.+ ..+...+..+.-.+.+.++..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 57899999999999999995 567888999999999999999999999 8888875 5677777777666666655543
No 167
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.73 E-value=9.5e-05 Score=82.07 Aligned_cols=115 Identities=28% Similarity=0.480 Sum_probs=102.1
Q ss_pred CChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc--CCHHHH
Q 006908 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GECRKS 466 (626)
Q Consensus 389 ~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl--~~~~~A 466 (626)
.+....+..+..++.+||.+|+.++|..|...|..++.+++.-++ ..+.++.|++.|++.+ ++|..+
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----------~~a~~~~~~~s~~m~~~l~~~~~~ 112 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----------VVATLRSNQASCYMQLGLGEYPKA 112 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----------hhhhHHHHHHHHHhhcCccchhhh
Confidence 355677889999999999999999999999999999995443222 3467899999998876 589999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 467 ~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+..|.-|+...|...+++++|+.+|..++.++-|++++.-....+|.+
T Consensus 113 ~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 113 IPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred cCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999999997
No 168
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.71 E-value=0.00031 Score=70.82 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=75.4
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHH
Q 006908 448 LLHLNVAACL-LKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAA 521 (626)
Q Consensus 448 ~~~~Nla~~~-~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~--~~~~~~ 521 (626)
...++.|.++ ++.++|.+|+..|...+...|++ +.|+|++|.+|+..|+|++|+..|+++++..|++. .++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 5677888887 66899999999999999999988 58999999999999999999999999999999863 334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHccccCCC
Q 006908 522 LSKLKKQRQEVESKARKQFKGLFDKKP 548 (626)
Q Consensus 522 l~~l~~~~~~~~~~~~~~~~~~~~~~~ 548 (626)
+..+...+.. ..+.+..|+......+
T Consensus 223 lg~~~~~~g~-~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDKGD-TAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHHCc
Confidence 4444433332 2333445555544433
No 169
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00071 Score=69.76 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=81.9
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH--------------
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC-------------- 463 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~-------------- 463 (626)
...+..+|+.+.+.++..+|+-.|+.|.. +.|.+ ..+|-.+-.||+-.+.+
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~----Lap~r-----------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQM----LAPYR-----------LEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHh----cchhh-----------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 45677889999999999999999999998 44433 23444444444444444
Q ss_pred ----------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006908 464 ----------------------RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 521 (626)
Q Consensus 464 ----------------------~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~ 521 (626)
++|...++++|.++|...+|-..+|..+..-|.+.++++.++++|...|+. .....
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~ 476 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNH 476 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHH
Confidence 455555566666667777777777777777888888888888888877764 45666
Q ss_pred HHHHHHHHHHHHHH
Q 006908 522 LSKLKKQRQEVESK 535 (626)
Q Consensus 522 l~~l~~~~~~~~~~ 535 (626)
|..+-....+.++.
T Consensus 477 Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 477 LGDIMRAQNEPQKA 490 (564)
T ss_pred HHHHHHHhhhHHHH
Confidence 66655544444433
No 170
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.66 E-value=0.0014 Score=64.27 Aligned_cols=127 Identities=21% Similarity=0.283 Sum_probs=98.2
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..|-++|...++.|+|.+|+..|++... ..|.++. .-.+.+.++.+++|.++|..|+...++-+.+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~----~~p~s~~--------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDS----RHPFSPY--------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCcc--------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 56677888999999999999999999887 5555432 23467789999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHHHHHH
Q 006908 478 PAHV---KGLYRRGMAYMALG--------EFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQEVESKA 536 (626)
Q Consensus 478 p~~~---ka~~~~g~a~~~lg--------~~~eA~~~~~kAl~l~P~~~--~~~~~~l~~l~~~~~~~~~~~ 536 (626)
|.+. -++|-+|.+++..= --.+|...|+..+.--|++. +++...+..++..+...+-.-
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~I 173 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAI 173 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 8775 47899999987642 23568888888999888763 466666666666655544333
No 171
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00011 Score=73.32 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=94.0
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
.+.+.+.|-++|-.++|+.++..|++|+.. ...++ ..+.+|+|++.+..-.|++.-|..++.-+|.-|
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlst----at~~~--------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALST----ATQPG--------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhh----ccCcc--------hhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 456778899999999999999999999983 32221 235699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+++..||.++|..-+..|+.++|+..|+.|-.+.|+.
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 9999999999999999999999999999999999974
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.66 E-value=0.00094 Score=61.92 Aligned_cols=101 Identities=19% Similarity=0.302 Sum_probs=88.3
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
.....||.+...|+|.+|..+|++++.- +...+ ..+++.+|.+++.++++..|...++.+.+.+|.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG---~fA~d-----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSG---IFAHD-----------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcc---ccCCC-----------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 4456889999999999999999999983 22233 357788999999999999999999999999985
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 480 --HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 480 --~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
.+..+...|+++..+|.+.+|...|+.|+..-|+.
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 57888999999999999999999999999999885
No 173
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00024 Score=75.95 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 521 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~d-------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~ 521 (626)
++.-+|.+.+..+.|.+|+.++..+|+.- +.+...+.++|.++.+++.|++|+..|++||.+.|.+ ..+...
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~~as 494 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-ASTHAS 494 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhHHHH
Confidence 55668999999999999999999998432 1244568999999999999999999999999999997 566666
Q ss_pred HHHHHHHHH
Q 006908 522 LSKLKKQRQ 530 (626)
Q Consensus 522 l~~l~~~~~ 530 (626)
+..+...+.
T Consensus 495 ig~iy~llg 503 (611)
T KOG1173|consen 495 IGYIYHLLG 503 (611)
T ss_pred HHHHHHHhc
Confidence 665544433
No 174
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.64 E-value=0.0018 Score=69.83 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (626)
Q Consensus 394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a 473 (626)
+.+.+.....+|-..+-.|+|..|.+...++-... +.+ ...+...|.+..++|+++.|..++.++
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-----~~p----------~l~~llaA~aA~~~g~~~~A~~~l~~A 144 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHA-----EQP----------VVNYLLAAEAAQQRGDEARANQHLERA 144 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc-----cch----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45567777788888888888888887776655511 110 112333455557778888888888888
Q ss_pred HHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908 474 LDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV 532 (626)
Q Consensus 474 L~~dp~~~k-a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~ 532 (626)
.+.+|++.- .....+..+...|++++|++.++++++.+|+| +.+...+..+.....+.
T Consensus 145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~-~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH-PEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhH
Confidence 777777643 33455777777888888888888888888876 55555555555444433
No 175
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.63 E-value=0.00038 Score=75.47 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=87.4
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
.+..++-.+|..++|.+.+...+..|. -.|...+ .+.-.|..+..+|+-++|...+..++..|+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~----k~~eHge-----------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~ 73 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILK----KFPEHGE-----------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLK 73 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH----hCCccch-----------hHHhccchhhcccchHHHHHHHHHHhccCcc
Confidence 345566667777888888888877777 3444322 2333577777888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV 532 (626)
Q Consensus 480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~ 532 (626)
+.-+|.-+|..+..-.+|++|+++|+.||.++|+| ..+.+-|..++..++..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN-~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN-LQILRDLSLLQIQMRDY 125 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888887 56777777776555543
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.63 E-value=0.00031 Score=74.56 Aligned_cols=87 Identities=23% Similarity=0.294 Sum_probs=57.0
Q ss_pred hchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 006908 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL 484 (626)
Q Consensus 405 Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~ 484 (626)
+..++..++-.+|++...+++. ..|.+ ..++.-.|..+++.++|+.|+..+.++.++.|++.++|
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~----~~p~d-----------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W 271 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALK----ENPQD-----------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETW 271 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHH
Confidence 3344444555666666666665 34433 33555567777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 006908 485 YRRGMAYMALGEFEEAQRDFEM 506 (626)
Q Consensus 485 ~~~g~a~~~lg~~~eA~~~~~k 506 (626)
+.++.+|..+|+|++|+..++.
T Consensus 272 ~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 272 YQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHhc
Confidence 7777777777777777765553
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.60 E-value=0.00012 Score=75.24 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (626)
Q Consensus 392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~ 471 (626)
..+..+...+-+.||.||-.|+|+.|+..-+.-|.+-.... + ....-.+|.|+|.||.-+|+|+.|+++|.
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--D-------rAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--D-------RAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--h-------HHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 44555667788899999999999999999888776322111 0 11223589999999999999999999999
Q ss_pred HHHHhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908 472 KVLDAN----P--AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (626)
Q Consensus 472 ~aL~~d----p--~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P 512 (626)
.++.+. . ..+..-|.+|++|.-+.+++.|+.++++-|.+..
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987553 2 2356789999999999999999999999887743
No 178
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.60 E-value=0.00015 Score=51.70 Aligned_cols=39 Identities=31% Similarity=0.408 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006908 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 522 (626)
Q Consensus 483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l 522 (626)
+++.+|.+|..+|++++|++.|+++++.+|+| ..++..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~-~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD-PEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHh
Confidence 44555555555555555555555555555554 3344333
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.00019 Score=73.54 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=75.6
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
-+.+..+..-|+.+-..++|.+|...|.+|..+...... ....+.+|.+.+.||.+. ++.+|+.++.+|+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~---------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD---------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence 345666777777777888999999999999886544221 112356777788887666 8888888888888
Q ss_pred HhC--CC----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 006908 475 DAN--PA----HVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKV 510 (626)
Q Consensus 475 ~~d--p~----~~ka~~~~g~a~~~l-g~~~eA~~~~~kAl~l 510 (626)
.+- .. -++++.++|.+|... +++++|++.|++|+++
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 762 11 267888888888887 8888888888888887
No 180
>PRK11906 transcriptional regulator; Provisional
Probab=97.58 E-value=0.00059 Score=72.40 Aligned_cols=88 Identities=13% Similarity=0.035 Sum_probs=78.7
Q ss_pred cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006908 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (626)
Q Consensus 411 ~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a 490 (626)
...-.+|.++-.+|+. +.+.| ..++..+|.+....++++.|+..+++|+.++|+.+.+||.+|..
T Consensus 317 ~~~~~~a~~~A~rAve----ld~~D-----------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 317 ELAAQKALELLDYVSD----ITTVD-----------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred hHHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 4456677777777777 67766 45788899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 006908 491 YMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 491 ~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
+...|+.++|++.+++|++++|-
T Consensus 382 ~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 382 HFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHcCCHHHHHHHHHHHhccCch
Confidence 99999999999999999999997
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.58 E-value=0.0011 Score=58.23 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
+++++|.++-.+|+..+|+..|.++++..... ..++..+|.++..+|++++|+..|++++...|+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 67899999999999999999999999975433 679999999999999999999999999998887
No 182
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.56 E-value=0.00018 Score=51.18 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a 490 (626)
+++.+|.+|..+|++++|+..++++++.+|+|+.+++.+|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 678899999999999999999999999999999999999863
No 183
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.0015 Score=61.23 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=57.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006908 453 VAACLLKLGECRKSIEACNKVLDANPAHV-----KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516 (626)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~-----ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~ 516 (626)
-|.-+++.|+|.+|...|..||++.|... -.|.++|.|+++++.++.|+.++.+|++|+|.+..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 36668899999999999999999998753 36889999999999999999999999999998743
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.54 E-value=0.00058 Score=70.28 Aligned_cols=105 Identities=22% Similarity=0.220 Sum_probs=84.8
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.-.++-+.||.+.-.|+|+.|+++|++++.+-..+.... ..+...+.+|.+|.-+++|.+||.+..+-|.+
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~---------vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT---------VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh---------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334566899999999999999999999887543332221 22455667999999999999999999987766
Q ss_pred C------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 477 N------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 477 d------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
. -....|++.+|++|..+|..+.|+...++++++
T Consensus 305 AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 305 AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4 245789999999999999999999998888776
No 185
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.53 E-value=0.00048 Score=50.92 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (626)
Q Consensus 482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~ 530 (626)
..+|.+|.++.++|+|++|+.+++.+|+++|+| ..+......++.+++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N-~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN-RQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHHh
Confidence 468889999999999999999999999999998 556666665554443
No 186
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.002 Score=64.71 Aligned_cols=115 Identities=20% Similarity=0.226 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 473 (626)
Q Consensus 394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a 473 (626)
.++.|.-+.+.+..+....+++.|.....+|+. .+|.. +.+-.-+|.+++..|+|..|++.+..+
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq----a~~~c-----------vRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQ----ADKKC-----------VRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----hCccc-----------eehhhhhhHHHHhccchHHHHHHHHHH
Confidence 355677788888888889999999999999998 45443 334455899999999999999999999
Q ss_pred HHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908 474 LDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (626)
Q Consensus 474 L~~dp~~-~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l 525 (626)
++.||.. ...+-.+..||..+|+.++.+..+.++.+..++. ++...+..+
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~~l~l~~l 291 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--DAELMLADL 291 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--cHHHHHHHH
Confidence 9999987 4678889999999999999999999999998874 333344433
No 187
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.49 E-value=0.00021 Score=71.76 Aligned_cols=62 Identities=21% Similarity=0.359 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (626)
Q Consensus 451 ~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P 512 (626)
--.|.-|+|+|.|++|+.+|.+++.++|.|+-.+.+||.||+++..|..|..++..|+.||-
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 34789999999999999999999999999999999999999999999999999999999974
No 188
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.47 E-value=0.00045 Score=75.93 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
+..-+|...+..++|.+|..+++..++++|-....||++|.|..+++++..|..+|.+++.++|+| ..++++|....-+
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-AEAWNNLSTAYIR 565 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-hhhhhhhhHHHHH
Confidence 334445555667999999999999999999999999999999999999999999999999999998 6888888877655
Q ss_pred HHHHH
Q 006908 529 RQEVE 533 (626)
Q Consensus 529 ~~~~~ 533 (626)
..+..
T Consensus 566 ~~~k~ 570 (777)
T KOG1128|consen 566 LKKKK 570 (777)
T ss_pred HhhhH
Confidence 55433
No 189
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.44 E-value=0.0018 Score=70.06 Aligned_cols=122 Identities=17% Similarity=0.032 Sum_probs=92.9
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
........|..+...|++++|.....+++. ..|++... ....-+....+..++...++..++++++.
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~----~~pd~~~~---------~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK----KLGDDRAI---------SLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHh----hCCCcccc---------hhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 445566788889999999999999999999 56655210 00112333345568889999999999999
Q ss_pred CCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908 477 NPAHV--KGLYRRGMAYMALGEFEEAQRDFE--MMMKVDKSSEPDATAALSKLKKQRQEVE 533 (626)
Q Consensus 477 dp~~~--ka~~~~g~a~~~lg~~~eA~~~~~--kAl~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (626)
+|+++ ..+..+|..++..|+|++|.++|+ ++++.+|++ . +...+..+..+..+..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~-~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-N-DLAMAADAFDQAGDKA 387 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-H-HHHHHHHHHHHcCCHH
Confidence 99999 788899999999999999999999 688899985 3 3446666665554433
No 190
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.43 E-value=0.0007 Score=59.06 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=57.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
-|.+....++.+.|++.|.++|.+.|.++.||.+|++++.-.|+.++|+.++++|+++..+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 4666778899999999999999999999999999999999999999999999999999654
No 191
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0014 Score=67.60 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=88.3
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH-----------------HHHhhhh------hHHHHHHH
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------KVFVGKR------NLLHLNVA 454 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~-----------------~~~~~~~------~~~~~Nla 454 (626)
...+-..|..+|..|++.+|+..|+++.. ++|..-+-. .....+. +.-|+--+
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 44566889999999999999999999987 555542211 1111111 11123334
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
...+..++|..|+.+..++|..+|++..||...|+++..+++.++|+-.|+.|..+.|..
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence 455678899999999999999999999999999999999999999999999999999864
No 192
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.42 E-value=0.00032 Score=46.52 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
.+++++|.+++++|+|.+|+.+|.++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 478899999999999999999999999999975
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0044 Score=62.18 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=97.5
Q ss_pred ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006908 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (626)
Q Consensus 412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~ 491 (626)
...+..+...+.-|. .+|.|.+ -|.-||.+|+.++++..|...|.+|+++.|+|+..+.-+|.++
T Consensus 136 ~~~~~l~a~Le~~L~----~nP~d~e-----------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL 200 (287)
T COG4235 136 QEMEALIARLETHLQ----QNPGDAE-----------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL 200 (287)
T ss_pred ccHHHHHHHHHHHHH----hCCCCch-----------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345566666666676 6787743 5677999999999999999999999999999999999999998
Q ss_pred HHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCccccc
Q 006908 492 MALG---EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVG 555 (626)
Q Consensus 492 ~~lg---~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (626)
+... .-.+|...|++|+.+||.| ..+...|..-.....++.+ -...++.|.+..+....-..
T Consensus 201 ~~~a~~~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~~~~-A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 201 YYQAGQQMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGDYAE-AAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHcccHHH-HHHHHHHHHhcCCCCCchHH
Confidence 8754 3678999999999999998 5677777665544444433 34567888887766655443
No 194
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.39 E-value=0.0047 Score=66.63 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=82.6
Q ss_pred hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka 483 (626)
.+....++|+++.|..+|.+|.+ ..|++. .....-.+..++..|+++.|+..++++++.+|+++.+
T Consensus 124 aA~aA~~~g~~~~A~~~l~~A~~----~~~~~~----------~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~a 189 (398)
T PRK10747 124 AAEAAQQRGDEARANQHLERAAE----LADNDQ----------LPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEV 189 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh----cCCcch----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 34555899999999999999998 555441 1223345889999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 484 ~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+..++.+|...|+|++|++.+.+..+..+.+
T Consensus 190 l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~ 220 (398)
T PRK10747 190 LRLAEQAYIRTGAWSSLLDILPSMAKAHVGD 220 (398)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999988887665
No 195
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.38 E-value=0.00026 Score=47.10 Aligned_cols=33 Identities=30% Similarity=0.587 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
+++|+.+|.++..+|++++|+..|++|++++|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 357788888888888888888888888888774
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.27 E-value=0.0063 Score=59.12 Aligned_cols=118 Identities=20% Similarity=0.324 Sum_probs=85.6
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-----------CHHHH
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-----------ECRKS 466 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-----------~~~~A 466 (626)
...+...|..+|+.|+|..|+..|++.+. ..|.++ ...-+++.+|.|++++. ...+|
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~----~yP~~~--------~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIK----LYPNSP--------KADYALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH----H-TT-T--------THHHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCc--------chhhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 34556789999999999999999999999 455442 12346777788876653 34589
Q ss_pred HHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 467 IEACNKVLDANPAHV-----------------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 467 ~~~~~~aL~~dp~~~-----------------ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
+..+...+..-|++. .--+..|.-|+..|.|..|+..|+.+++.-|+. +.+...|..+...
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t-~~~~~al~~l~~~ 187 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT-PAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC-chHHHHHHHHHHH
Confidence 999999999999872 223446788889999999999999999999986 4555555555433
No 197
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.0096 Score=58.08 Aligned_cols=123 Identities=18% Similarity=0.157 Sum_probs=88.1
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHH-----------------HHhhh------hhHHHHHHHHHHHH
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------VFVGK------RNLLHLNVAACLLK 459 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~-----------------~~~~~------~~~~~~Nla~~~~k 459 (626)
-.|..+-..|+|++|+++|...|. -+|.+.-... .+.+. -..+|.-+|..|+.
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~----ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLE----DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS 166 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhc----cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 455566667889999999998887 3444421110 01110 12367889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE---FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (626)
Q Consensus 460 l~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~---~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~ 530 (626)
+++|.+|.-++++++-+.|.|+-.+-|+|-.++-+|- ++-|+++|.+|++++|.+ -.+...+-.+-..+.
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~-~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN-LRALFGIYLCGSALA 239 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887764 667999999999999865 334444444444443
No 198
>PRK10941 hypothetical protein; Provisional
Probab=97.22 E-value=0.0034 Score=63.30 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 445 ~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+......|+=.+|.+.++|..|+.+++.+|.++|+++--+--||.+|.+++.+..|+.+|+..++..|++
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 4456788999999999999999999999999999999999999999999999999999999999999986
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.0026 Score=63.04 Aligned_cols=100 Identities=22% Similarity=0.274 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHH
Q 006908 450 HLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATAALSK 524 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~--~~~~~l~~ 524 (626)
.+|.|.-+++.|+|..|...|..-+..-|++ +.|+|++|.+++.+|+|++|...|..+++-.|++.+ ++.-.|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999876 679999999999999999999999999999888742 33444444
Q ss_pred HHHHHHHHHHHHHHHHHccccCCCCC
Q 006908 525 LKKQRQEVESKARKQFKGLFDKKPGE 550 (626)
Q Consensus 525 l~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (626)
+...+.+ ....+..+....++.++.
T Consensus 224 ~~~~l~~-~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 224 SLGRLGN-TDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHhcC-HHHHHHHHHHHHHHCCCC
Confidence 4443332 233345566555555443
No 200
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.19 E-value=0.0033 Score=69.77 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=94.5
Q ss_pred hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka 483 (626)
.|..+.+.++-++|..+..+|-.+ . .+.+..|+-+|.++...|.+.+|...|..|+.+||+++.+
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~----~-----------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s 720 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKI----D-----------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS 720 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhc----c-----------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence 344444555666777777777662 2 2346788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908 484 LYRRGMAYMALGEFEEAQR--DFEMMMKVDKSSEPDATAALSKLKKQRQEVE 533 (626)
Q Consensus 484 ~~~~g~a~~~lg~~~eA~~--~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~ 533 (626)
..-+|.++...|+-.-|.. .+..|+++||.| ++++..|..+-+++....
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccchH
Confidence 9999999999999877777 999999999998 789999999877766544
No 201
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.0085 Score=58.46 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 006908 447 NLLHLNVAACLLKLG---ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE 499 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~---~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~e 499 (626)
..++..+|.+++-+| ++.-|..+|.++|.++|.+..++|-+-.|...+-+...
T Consensus 188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk 243 (289)
T KOG3060|consen 188 PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISK 243 (289)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhH
Confidence 456777888888776 68889999999999999999999988777765544433
No 202
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.18 E-value=0.0018 Score=66.46 Aligned_cols=105 Identities=19% Similarity=0.258 Sum_probs=66.5
Q ss_pred hhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH--cC--CHHHHHHHHHHHHHhCCCCHH
Q 006908 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--LG--ECRKSIEACNKVLDANPAHVK 482 (626)
Q Consensus 407 ~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k--l~--~~~~A~~~~~~aL~~dp~~~k 482 (626)
.+.+.++++.|.+.++.+-+ +..+ .+..++|.++.. .| .+.+|...|.......+.+++
T Consensus 140 i~L~~~R~dlA~k~l~~~~~----~~eD-------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~ 202 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQ----IDED-------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK 202 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHC----CSCC-------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH
T ss_pred HHHHcCCHHHHHHHHHHHHh----cCCc-------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH
Confidence 44556666666666655443 2211 234445444433 33 588888888887776677888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (626)
Q Consensus 483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~ 529 (626)
.+..++.|++.+|+|++|...+++|+..+|.+ +++..++..+....
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~-~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPND-PDTLANLIVCSLHL 248 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHh
Confidence 88888888888888888888888888888875 56666665554333
No 203
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00074 Score=64.97 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=62.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (626)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~ 524 (626)
-+.+++.-+.|..|+.+|.+||.++|..+.-|.+++.||+++.+|+.+..++++|++++|+. .....-|..
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~-vk~h~flg~ 86 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL-VKAHYFLGQ 86 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-HHHHHHHHH
Confidence 47778888999999999999999999999999999999999999999999999999999985 334444443
No 204
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.16 E-value=0.0038 Score=72.40 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=89.4
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD--- 475 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~--- 475 (626)
..++.+|.+|-+.|++++|...|+++|. +.|.+ +.+++|+|..|... +.++|+.++.+|+.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~----~D~~n-----------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVK----ADRDN-----------PEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999 67777 45888888888888 88888888888873
Q ss_pred -----------------hCCCCHHHHHH--------HH------------HHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 006908 476 -----------------ANPAHVKGLYR--------RG------------MAYMALGEFEEAQRDFEMMMKVDKSSEPDA 518 (626)
Q Consensus 476 -----------------~dp~~~ka~~~--------~g------------~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~ 518 (626)
.+|.+..-+++ ++ .+|....+|++++..|+.+|+++|+| .-+
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n-~~a 259 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN-NKA 259 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc-hhh
Confidence 34554433222 34 77888999999999999999999998 456
Q ss_pred HHHHHHHHH
Q 006908 519 TAALSKLKK 527 (626)
Q Consensus 519 ~~~l~~l~~ 527 (626)
+..|..+.+
T Consensus 260 ~~~l~~~y~ 268 (906)
T PRK14720 260 REELIRFYK 268 (906)
T ss_pred HHHHHHHHH
Confidence 667766654
No 205
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.14 E-value=0.0069 Score=64.47 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=92.0
Q ss_pred cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006908 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490 (626)
Q Consensus 411 ~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a 490 (626)
.++|+.|+..+++... ..|. +..-+|.+++.+++..+|++...++|..+|.++..+.-.+..
T Consensus 182 t~~~~~ai~lle~L~~----~~pe--------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRE----RDPE--------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred cccHHHHHHHHHHHHh----cCCc--------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4568888888888666 3332 344489999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006908 491 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKA 536 (626)
Q Consensus 491 ~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~ 536 (626)
++..++++.|+...++|.++.|++ -..+..|..+...+.+.+.+-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999996 689999999988877776654
No 206
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.11 E-value=0.0018 Score=69.40 Aligned_cols=109 Identities=20% Similarity=0.284 Sum_probs=92.8
Q ss_pred hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka 483 (626)
.|-.+-..|+...|+.+...|+. ..|... ..-..|+|.+.++-+....|-..+.++|.++...+-.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~----~~p~~~----------~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~ 678 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALN----LAPLQQ----------DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLT 678 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhc----cChhhh----------cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchH
Confidence 44444568899999999999998 444321 2356889999999999999999999999999888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 484 ~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
+|-+|+++..+.+.+.|++.|+.|++++|++ ..+...|..+..
T Consensus 679 ~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~-~~~~~~l~~i~c 721 (886)
T KOG4507|consen 679 FLSLGNAYLALKNISGALEAFRQALKLTTKC-PECENSLKLIRC 721 (886)
T ss_pred HHhcchhHHHHhhhHHHHHHHHHHHhcCCCC-hhhHHHHHHHHH
Confidence 9999999999999999999999999999998 778887776654
No 207
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.08 E-value=0.0058 Score=67.51 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
-+++.+|++|..+|++.+|+.+.++||+..|..+..|+.+|+++-+.|++.+|.++++.|-.+|+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 3667899999999999999999999999999999999999999999999999999999999999875
No 208
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.06 E-value=0.0043 Score=63.71 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=72.6
Q ss_pred ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006908 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (626)
Q Consensus 412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~ 491 (626)
.++..|...|+.... ..+.+ ..+++.+|.|++.+|+|++|...+.+++..+|+++.++.++..+.
T Consensus 181 e~~~~A~y~f~El~~----~~~~t-----------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 181 EKYQDAFYIFEELSD----KFGST-----------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp TCCCHHHHHHHHHHC----CS--S-----------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh----ccCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 368899999998655 22222 456788999999999999999999999999999999999999999
Q ss_pred HHcCCH-HHHHHHHHHHHhcCCCC
Q 006908 492 MALGEF-EEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 492 ~~lg~~-~eA~~~~~kAl~l~P~~ 514 (626)
..+|+. +.+.+.+.+....+|++
T Consensus 246 ~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHhCCChhHHHHHHHHHHHhCCCC
Confidence 999999 66778888888899987
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.04 E-value=0.0034 Score=62.78 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~---ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
...++..|.-++..|+|.+|+..+.+++...|... .+.+.+|.+|+.+++|++|+..|++++++.|++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 44567789999999999999999999999999875 4569999999999999999999999999999874
No 210
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.00 E-value=0.0033 Score=71.42 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
|..+|..|++.+++..|+..++.||+.+|.+..+|.-+|.||...|+|.-|++.|.+|..++|.+ .-.+.-.+.++
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-~y~~fk~A~~e 640 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-KYGRFKEAVME 640 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-HHHHHHHHHHH
Confidence 45589999999999999999999999999999999999999999999999999999999999986 33333333333
No 211
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.0025 Score=63.28 Aligned_cols=93 Identities=24% Similarity=0.379 Sum_probs=75.4
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.|..+.+.|..+|+.|+|+.|++.|+.|+. ..... ..+-+|+|.|+++.++|..|+++.+++++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlq----vsGyq-----------pllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQ----VSGYQ-----------PLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHh----hcCCC-----------chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 356677899999999999999999999998 33222 346789999999999999999999998854
Q ss_pred C----CC----------------C---------HHHHHHHHHHHHHcCCHHHHHHHH
Q 006908 477 N----PA----------------H---------VKGLYRRGMAYMALGEFEEAQRDF 504 (626)
Q Consensus 477 d----p~----------------~---------~ka~~~~g~a~~~lg~~~eA~~~~ 504 (626)
- |. | ..|+...+.++++.++++.|.+.+
T Consensus 208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 2 21 1 457777888899999999988765
No 212
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.95 E-value=0.0021 Score=61.12 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 445 ~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
.++.+++-+|..|-.+|-+.-|..+++++|.+.|.-+.++..+|.-+...|+|+.|.+.|+..+++||.++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 35778899999999999999999999999999999999999999999999999999999999999999873
No 213
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.012 Score=55.30 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=81.1
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
...+.+..++..+++++|....+.++. .+.| ..+...+-.++|.+++.++.+++|+..+...-. .
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~D-------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---~ 155 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALA-----QTKD-------ENLKALAALRLARVQLQQKKADAALKTLDTIKE---E 155 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHc-----cchh-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---c
Confidence 445678888999999999999999997 3333 245566788999999999999999988776532 3
Q ss_pred CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 480 HVKG--LYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 480 ~~ka--~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+..+ --.+|-++...|+-++|++.|.+|+..++++
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3344 5678999999999999999999999998653
No 214
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.91 E-value=0.0034 Score=46.40 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG 488 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g 488 (626)
+++.+|.+++++|+|..|..+|..+|+++|+|..|.-.+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 6777999999999999999999999999999987765443
No 215
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.87 E-value=0.0072 Score=54.36 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
..+++.|...++.|+|.+|++.++.+...-|-. ..|.+.++-+|+..++|++|++.+++-++|+|.+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 467788999999999999999999999888754 68999999999999999999999999999999984
No 216
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.84 E-value=0.012 Score=64.21 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=98.2
Q ss_pred HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH-------------HHHhhhh---------hHHHHHHHHHHHH
Q 006908 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-------------KVFVGKR---------NLLHLNVAACLLK 459 (626)
Q Consensus 402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~-------------~~~~~~~---------~~~~~Nla~~~~k 459 (626)
...+...+..|+...|.....+|.. .+|.+.+-+ +..+.+. ..+|+.-+....-
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~----~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFE----ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHH----hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH
Confidence 3456778899999999999999998 555554322 1112222 2356666666677
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (626)
Q Consensus 460 l~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~ 530 (626)
+++.++|+..|+++|+..|...|-|..+|+++..+++.+.|...|...++..|.. .-.+-.|.++..+..
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-IPLWLLLAKLEEKDG 733 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-chHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999987 557777777766553
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.017 Score=56.51 Aligned_cols=69 Identities=16% Similarity=0.292 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 446 ~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
...++.|.|.+|+-.++|..|...++++++.||.++-|..+.|.|++-+|+..+|++.++.++...|..
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 356889999999999999999999999999999999999999999999999999999999999999974
No 218
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.80 E-value=0.0021 Score=42.56 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
.+|+++|.+|.++|++++|+.++.++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478999999999999999999999999999854
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.78 E-value=0.022 Score=52.42 Aligned_cols=80 Identities=6% Similarity=-0.126 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
..+..|.-++..|+|.+|...|.-...+||.|.+-++-+|.|+..+++|++|+..|-.|..+++++ +..-.....+.-.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p~f~agqC~l~ 117 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCccchHHHHHHH
Confidence 345578888999999999999999999999999999999999999999999999999999998765 3333344444333
Q ss_pred H
Q 006908 529 R 529 (626)
Q Consensus 529 ~ 529 (626)
+
T Consensus 118 l 118 (165)
T PRK15331 118 M 118 (165)
T ss_pred h
Confidence 3
No 220
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.69 E-value=0.016 Score=63.31 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=60.1
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
.+.+...|-.+...|+-++|..+-..+++ ..+.+ ..||.-+|..+..-++|.+|+.+|..||.++
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr----~d~~S-----------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLR----NDLKS-----------HVCWHVLGLLQRSDKKYDEAIKCYRNALKIE 105 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhc----cCccc-----------chhHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 44445556666666666666666666665 22222 2355556666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
|+|..-|+-++....++++|+-....-.+.|++.|.+
T Consensus 106 ~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 106 KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 6666666666666666666666666666666666654
No 221
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.67 E-value=0.018 Score=50.81 Aligned_cols=83 Identities=16% Similarity=0.280 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006908 447 NLLHLNVAACLLKLGE---CRKSIEACNKVLD-ANPA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 521 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~---~~~A~~~~~~aL~-~dp~-~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~ 521 (626)
..+.+|+|.|+.+..+ ..+.+..++..+. -.|. .-..+|.++..|+++++|+.|+.+++..|+.+|+| ..+...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n-~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN-RQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc-HHHHHH
Confidence 4577889999988764 6677888888886 3443 46789999999999999999999999999999998 456655
Q ss_pred HHHHHHHHH
Q 006908 522 LSKLKKQRQ 530 (626)
Q Consensus 522 l~~l~~~~~ 530 (626)
-..++.++.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 555554443
No 222
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.65 E-value=0.0062 Score=69.26 Aligned_cols=95 Identities=16% Similarity=0.277 Sum_probs=88.2
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
+..+|-.+.+.+++..|+..|+.|++ ..|.+ ..+|..+|.+|...|+|..|++.+++|..++|.+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR----~dPkD-----------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALR----TDPKD-----------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhc----CCchh-----------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 44589999999999999999999999 78877 5689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
.-+-|..+.....+|+|.+|+..+...+..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999887765
No 223
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.015 Score=59.12 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=36.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+|.+++..-.|.+|++.|.++|.-+|+....-..+|.||.++.-|+-+.+.+.-.|..-|++
T Consensus 157 LAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 157 LASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 44445555556666666666666555555555556666666666666666666666666654
No 224
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.015 Score=63.36 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=87.9
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp 478 (626)
..+.+.|..+|+..+|..|++.|...+.++.. | +.. ...+.+.-|++.||+++.+.+.|.+++.+|-+.||
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~----D-~~~----~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS----D-NYS----DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR 425 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc----h-hhh----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence 35668999999999999999999999995442 2 111 12267888999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
.++-.-+..-++...-+.-++|+..+.+....
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999999999999999999999998877655
No 225
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.56 E-value=0.0038 Score=40.86 Aligned_cols=31 Identities=32% Similarity=0.589 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
|+|++|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 6677777777777777777777777777665
No 226
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.054 Score=52.31 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=77.9
Q ss_pred Hhhhchhhcc-ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 402 RVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 402 k~~Gn~~f~~-g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
...|..+-.. .++++|+.+|++|-+++..- +.......|++..|.---.+++|.+|+..|+++....-+|
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444433333 58999999999999865421 1223345688888888888999999999999987654433
Q ss_pred ------HHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 481 ------VKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 481 ------~ka~-~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+|-| +..|.||+...+.-.|...+++..+++|..
T Consensus 188 ~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 188 NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 5555 456888888899999999999999999987
No 227
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.52 E-value=0.059 Score=52.65 Aligned_cols=101 Identities=24% Similarity=0.266 Sum_probs=75.9
Q ss_pred hchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhC
Q 006908 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-------CRKSIEACNKVLDAN 477 (626)
Q Consensus 405 Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~-------~~~A~~~~~~aL~~d 477 (626)
+..+-....++.|+..|.-||-......... ...+.+++.+|.+|..+++ +..|+..|.+|++..
T Consensus 84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~--------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 84 PRDFSGERTLEEAIESYKLALLCAQIKKEKP--------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3355667789999999999997544322221 2457789999999999998 455666666666544
Q ss_pred C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 478 P------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 478 p------~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
. +....+|.+|..++.+|++++|+.+|.+++..--.
T Consensus 156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 156 DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 2 23688999999999999999999999999987433
No 228
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.02 Score=57.94 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDAN---PA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~d---p~-~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~ 516 (626)
-|---|.-|+|.++|..|+..|++.|... |+ |+-.|.|||-|+..+|+|..|+.++.+|+.++|.+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 34446888999999999999999999875 33 5678999999999999999999999999999999854
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.46 E-value=0.018 Score=58.82 Aligned_cols=117 Identities=22% Similarity=0.230 Sum_probs=89.7
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCC---------CCChhH----HHH---------------HhhhhhH
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---------PQDDEE----GKV---------------FVGKRNL 448 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~---------p~~~ee----~~~---------------~~~~~~~ 448 (626)
++.+..+.|..+|.+.++.+|+..+++.|..+.... +.-..+ .++ -......
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777899999999999999999999887554321 110000 000 1123456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~-----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
+|.|++..+-++.+|.+++.+|+-.+.+-... ..++.-+|+||..++.|+.|++.|++|++...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~ 154 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHN 154 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 79999999999999999999999999875433 367888999999999999999999999998544
No 230
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.41 E-value=0.005 Score=39.07 Aligned_cols=32 Identities=34% Similarity=0.720 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
.+++++|.++..++++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666666666666666666666666666654
No 231
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.015 Score=59.18 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=68.2
Q ss_pred hhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006908 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR 486 (626)
Q Consensus 407 ~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~ 486 (626)
.+..+.+|.-|+.+.+-.+. + +.||+ .++-.-+|.|++.+|+|++|+..|+-+.+-+..+.+.+.+
T Consensus 31 dfls~rDytGAislLefk~~----~---~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn 96 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLN----L---DREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN 96 (557)
T ss_pred HHHhcccchhHHHHHHHhhc----c---chhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence 34556788888887766554 1 11221 2344558999999999999999999999988788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 006908 487 RGMAYMALGEFEEAQRDFEMM 507 (626)
Q Consensus 487 ~g~a~~~lg~~~eA~~~~~kA 507 (626)
+|.|++-+|.|.+|...-.+|
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999998876654
No 232
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.33 E-value=0.0065 Score=41.03 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 483 GLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
||.++|.+|..+|+|++|+..|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788899999999999999999997655
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.29 E-value=0.03 Score=57.19 Aligned_cols=99 Identities=21% Similarity=0.214 Sum_probs=78.8
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP---- 478 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp---- 478 (626)
-.|+.+...+.|++|++.|++|+++-.... | .-+...++..++..|-.+++|++|+-+..+|+++-.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D-------~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l 197 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNND--D-------AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL 197 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccC--C-------ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc
Confidence 478888888999999999999999644322 1 123356788899999999999999999999887632
Q ss_pred --CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 479 --AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 479 --~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
-+ .-++|+++.++..+|++-+|.++++.|.++
T Consensus 198 ~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 198 KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 12 347899999999999999999999998776
No 234
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.29 E-value=0.025 Score=48.33 Aligned_cols=103 Identities=13% Similarity=0.183 Sum_probs=73.7
Q ss_pred hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHH----HHHcCCHHHHHHHHHHHHHhCCC
Q 006908 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC----LLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~----~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
.+..+|.+|++-+|++..+..+. .+..+...+ .++.+...++..+|.. -.|.--...|++++.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~----~h~~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLIS----RHGEDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHH----HccCCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 46788999999999999999988 444432211 2233333333333321 11112255688999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~ 511 (626)
.+..+|.+|+-+.....|++++.-.+++|.+.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999999999888888999999999998763
No 235
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.27 E-value=0.0041 Score=41.45 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=29.8
Q ss_pred HHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 006908 420 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 468 (626)
Q Consensus 420 ~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~ 468 (626)
+|++||+ ++|.+ ..+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie----~~P~n-----------~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE----LNPNN-----------AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHH----HCCCC-----------HHHHHHHHHHHHHCcCHHhhcC
Confidence 4889999 78888 5699999999999999999863
No 236
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.059 Score=58.50 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=82.1
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHH--------------------hhhhhHHHHHHHHHHHH
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF--------------------VGKRNLLHLNVAACLLK 459 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~--------------------~~~~~~~~~Nla~~~~k 459 (626)
.+.-+|..+|+.++|++|+..|+..++ -+.++.++.... ..-....++|.|..+..
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~k----n~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~ 187 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAK----NNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIE 187 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHh
Confidence 344588899999999999999998876 222222211100 00123478999999999
Q ss_pred cCCHHHHHHHHHHHHHhC-------CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 460 LGECRKSIEACNKVLDAN-------PAH--------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 460 l~~~~~A~~~~~~aL~~d-------p~~--------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
.|+|.+|++.+..|+.+. ..+ .-....++.++..+|+-++|...|...++.+|.+.
T Consensus 188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 999999999999995442 111 23566789999999999999999999999887653
No 237
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.075 Score=57.71 Aligned_cols=120 Identities=21% Similarity=0.277 Sum_probs=83.2
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH-----------------HHHhh-----hhhHHHHHHHHH
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------KVFVG-----KRNLLHLNVAAC 456 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~-----------------~~~~~-----~~~~~~~Nla~~ 456 (626)
..+...-|.+-+.++|++|+....+.|. ..|++.... ..+.. ......+-.|.|
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~----~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILS----IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHh----cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHH
Confidence 3444555666778888888888888777 444432210 00000 111223678999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Q 006908 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKL 525 (626)
Q Consensus 457 ~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~-~~~~~~~l~~l 525 (626)
+++++..++|+.+++ -+++...+.+..+|+.++++++|++|+..|+..++-+-++ +..++.++..+
T Consensus 89 ~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 999999999999988 5677788999999999999999999999999998865442 23344444433
No 238
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.17 E-value=0.0063 Score=64.49 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+-|-|.-.++-+.|+.|+..|.+||+++|+++--+-+|++|+.+.++|..|+.++.+|++++|..
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 44567778899999999999999999999999999999999999999999999999999999975
No 239
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.15 E-value=0.0087 Score=57.45 Aligned_cols=60 Identities=25% Similarity=0.451 Sum_probs=55.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 456 ~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
...+.++...|.+.+.++|++-|.+...|||+|....+.|+++.|.+.|++.|+++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345678999999999999999999999999999999999999999999999999999863
No 240
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.03 E-value=0.061 Score=58.98 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=79.1
Q ss_pred hccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006908 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG 488 (626)
Q Consensus 409 f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g 488 (626)
.-.++.++|+++++.||+.++ . ...+|+.+|+++-.+++.+.|...|..-+...|.++.-|..++
T Consensus 662 r~ld~~eeA~rllEe~lk~fp----~-----------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSFP----D-----------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhCC----c-----------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 345566777777777777333 2 2468999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 489 MAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 489 ~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
..--..|..-.|+..|.++...+|+|
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCc
Confidence 99999999999999999999999998
No 241
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.99 E-value=0.012 Score=39.72 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
+|.|+|.+|.++|+|++|+.+|.++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999997654
No 242
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.93 E-value=0.012 Score=38.33 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
+++++|.|+.++|++.+|+..+++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57889999999999999999999999999874
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.92 E-value=0.042 Score=60.44 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=79.6
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
-+...|..+..+|+.++|+..|++|+. . ..+ +.++...++..+|.|++-+.+|.+|..++.+.++.+ +
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~----~----q~~---~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~ 336 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIE----S----QSE---WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-K 336 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcc----c----hhh---HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-c
Confidence 355678888899999999999999885 1 122 344556789999999999999999999999998865 4
Q ss_pred CHHHH--HHHHHHHHHcCCH-------HHHHHHHHHHHhcC
Q 006908 480 HVKGL--YRRGMAYMALGEF-------EEAQRDFEMMMKVD 511 (626)
Q Consensus 480 ~~ka~--~~~g~a~~~lg~~-------~eA~~~~~kAl~l~ 511 (626)
+.+|+ |-.|.|+..+++. ++|...|.++-.+-
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 56664 5578899999999 88888888776553
No 244
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.92 E-value=0.2 Score=52.08 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (626)
Q Consensus 393 e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~ 472 (626)
-+...+......|-.-+-.|+|.+|.+...++-+ ..+ ....+|.--|.+...+|++..|-.+..+
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae----~~e-----------~p~l~~l~aA~AA~qrgd~~~an~yL~e 143 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAE----HGE-----------QPVLAYLLAAEAAQQRGDEDRANRYLAE 143 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh----cCc-----------chHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4566788888889888899999999999998766 111 1234666667777888888888888888
Q ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908 473 VLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE 531 (626)
Q Consensus 473 aL~~dp-~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~ 531 (626)
+-+..+ ++.-.+..++..+...|+++.|...+.++++..|.+ +.+.+...++......
T Consensus 144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~-~~vlrLa~r~y~~~g~ 202 (400)
T COG3071 144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH-PEVLRLALRAYIRLGA 202 (400)
T ss_pred HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC-hHHHHHHHHHHHHhcc
Confidence 888733 356677888888888888888888888888888887 4555555554444433
No 245
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.83 E-value=0.015 Score=36.73 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
.++.++|.|+..++++..|+..+.+++.++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 368899999999999999999999999998853
No 246
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.82 E-value=0.037 Score=55.34 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
+.+-+|.|.-..+.|+.++|...+..||.++|.++.++.+.|+....-++.-+|-.+|-+||.++|.|.
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 345566777788999999999999999999999999999999999999999999999999999999984
No 247
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.70 E-value=0.076 Score=49.52 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 463 ~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~----------~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
|+.|.+.+..+...||.++.+++|-|-|+..|.+ +++|+.-|+.||.++|+. .++.-.|.....
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHH
Confidence 7889999999999999999999999999998754 467889999999999996 566666665543
No 248
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.56 E-value=0.29 Score=52.37 Aligned_cols=110 Identities=14% Similarity=0.040 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006908 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493 (626)
Q Consensus 414 ~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~ 493 (626)
...-..+|+.|+. ..+.| ..+|++-..-..|.+.|.+....|.++|...|+++..|...|.=.+.
T Consensus 87 ~~rIv~lyr~at~----rf~~D-----------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe 151 (568)
T KOG2396|consen 87 PNRIVFLYRRATN----RFNGD-----------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE 151 (568)
T ss_pred HHHHHHHHHHHHH----hcCCC-----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHh
Confidence 3445677888888 33334 45777766666677779999999999999999999999999998888
Q ss_pred cCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006908 494 LGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQ 539 (626)
Q Consensus 494 lg~-~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (626)
.+. .+.|++.|.++|..+|++ +.++.+.-++.-.........+..
T Consensus 152 ~n~ni~saRalflrgLR~npds-p~Lw~eyfrmEL~~~~Kl~~rr~~ 197 (568)
T KOG2396|consen 152 INLNIESARALFLRGLRFNPDS-PKLWKEYFRMELMYAEKLRNRREE 197 (568)
T ss_pred hccchHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877 999999999999999998 778887777665544444444444
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.53 E-value=0.19 Score=47.32 Aligned_cols=95 Identities=31% Similarity=0.510 Sum_probs=72.3
Q ss_pred hhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHH
Q 006908 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-HVKGLY 485 (626)
Q Consensus 407 ~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~-~~ka~~ 485 (626)
.++..+++..|...|.+++. ..+.. ......+.+++..+...+++..|+..+.+++...+. ...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALE----LDPEL--------NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh----cCCCc--------cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 78888999999999999866 33310 001234455555577788888888888888888888 688888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 486 RRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 486 ~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
.++.++...+.+++|+..+.+++...|.
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 8888888888888888888888888876
No 250
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.38 E-value=0.09 Score=52.69 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
..+|......+....+.|+.++|..+|..|+. +.|.+++ ++..+|...-.-++.-+|-.+|.+||
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAla----laP~~p~-----------~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALA----LAPTNPQ-----------ILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHh----cCCCCHH-----------HHHHHhHHHHhhhhhHhhhhhhheee
Confidence 44555555677788999999999999999999 7887743 66677887777788899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHH
Q 006908 475 DANPAHVKGLYRRGMAYMA 493 (626)
Q Consensus 475 ~~dp~~~ka~~~~g~a~~~ 493 (626)
.++|.|.+|+.+|++..--
T Consensus 178 tisP~nseALvnR~RT~pl 196 (472)
T KOG3824|consen 178 TISPGNSEALVNRARTTPL 196 (472)
T ss_pred eeCCCchHHHhhhhccchH
Confidence 9999999999999876543
No 251
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.33 E-value=0.12 Score=57.19 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
+++-.+.++...|++++|++++...-..-.+....+-.+|.+++.+|++++|...|+..+..+|+| ......|..+.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~ 82 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence 334456777888888888888888776667778888888888888888888888888888888887 34444444443
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.32 E-value=0.37 Score=49.18 Aligned_cols=122 Identities=13% Similarity=-0.007 Sum_probs=89.5
Q ss_pred CCChhhHHHHHHHHHhhhchhhccc-cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 006908 388 GLSFDGIMDEAEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466 (626)
Q Consensus 388 ~~~~~e~~~~a~~~k~~Gn~~f~~g-~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A 466 (626)
.++++.....+..+.+-|..+++++ +|+.|+...++|+++++.. +..........+++..++..++.||+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~-~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP-GKMDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh-hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 3566777889999999999999999 9999999999999987541 1111111224567888999999999999987654
Q ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908 467 IEACNKVLDA----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 467 ~~~~~~aL~~----dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~ 511 (626)
.. |..+++. -|+.+-.++..=.++...++.+++.+.+.+++.--
T Consensus 104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 44 4444433 36666666555556666888898888888888753
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.31 E-value=0.11 Score=51.23 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+..++|-|...+..|+|.+|+..++.+....|.+ .++.+.++.|+++.++|++|+..+++-+.+.|.+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence 5578889999999999999999999999887754 6899999999999999999999999999999987
No 254
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.30 E-value=0.15 Score=53.08 Aligned_cols=110 Identities=22% Similarity=0.208 Sum_probs=77.3
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
.+.....+..+...|+++.|.+.-..+++ ...++ .++ +=.-.++.+++..=++..++.+...
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-----~~~D~-----------~L~--~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALK-----RQWDP-----------RLC--RLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----hccCh-----------hHH--HHHhhcCCCCchHHHHHHHHHHHhC
Confidence 33344556667788889999999888887 11111 111 1122356778888888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
|+++..++.+|+.+++.+.|.+|..+|+.|++..|+. .....+..+..
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~ 372 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALD 372 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHH
Confidence 8888888888888888888888888888888888873 34444444433
No 255
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.24 E-value=0.0063 Score=61.77 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=54.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 457 ~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
.+..|.++.|++.|..+|.++|.++--|-.|+.++++|++...|+++|..|++++|+..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence 34567799999999999999999999999999999999999999999999999999863
No 256
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.23 E-value=0.21 Score=55.58 Aligned_cols=120 Identities=10% Similarity=0.048 Sum_probs=86.9
Q ss_pred HHHHHhhhchhhcc---ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--------CHHHH
Q 006908 398 AEKIRVTGNRLFKE---GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--------ECRKS 466 (626)
Q Consensus 398 a~~~k~~Gn~~f~~---g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~--------~~~~A 466 (626)
|-.+..+|..++.+ +.+..|+.+|++|+. +.|++ +.+|.-+|.||.... +...|
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~----ldP~~-----------a~a~A~la~~~~~~~~~~~~~~~~l~~a 403 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK----SEPDF-----------TYAQAEKALADIVRHSQQPLDEKQLAAL 403 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 44445566655544 458899999999999 78876 445555666665542 24455
Q ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006908 467 IEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES 534 (626)
Q Consensus 467 ~~~~~~aL~~--dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~ 534 (626)
.....+++.+ +|..+.+|.-+|..+...|++++|...|++|+.++|+ ..+...+..+.....+.++
T Consensus 404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 404 STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHH
Confidence 6666666664 7888899999999999999999999999999999995 3567777766554444333
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.21 E-value=0.2 Score=47.11 Aligned_cols=103 Identities=30% Similarity=0.409 Sum_probs=83.8
Q ss_pred HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Q 006908 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA-CLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~-~~~kl~~~~~A~~~~~~aL 474 (626)
.....+...|......+++..|+..+.+++. ..+.+ .......+. ++..++++..|+..+.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALA----LDPDP-----------DLAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----CCCCc-----------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455667788888888999999999999998 33322 112233344 8999999999999999999
Q ss_pred HhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 475 DANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 475 ~~dp---~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
..+| .....++.++..+...++++.|+..+.+++...+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred hcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 9887 46778888888899999999999999999999988
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.14 E-value=0.57 Score=50.41 Aligned_cols=125 Identities=13% Similarity=0.123 Sum_probs=85.6
Q ss_pred CCCCChhhHHHHHHHHHhhhc------hhhc---cccHHHHHHHHHHHHHhcccCCCCCh------hHHHHH----hhhh
Q 006908 386 WTGLSFDGIMDEAEKIRVTGN------RLFK---EGKFELAKAKYEKVLRDFNHVNPQDD------EEGKVF----VGKR 446 (626)
Q Consensus 386 ~~~~~~~e~~~~a~~~k~~Gn------~~f~---~g~~~~A~~~y~~al~~l~~~~p~~~------ee~~~~----~~~~ 446 (626)
|.+.+.+.+++.|.+-.+.-. .+.. .....+|..+|++|++.-+.....+. ...+.. ....
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 556677777777665443221 1111 22468889999998874332211110 001111 1123
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~--~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
.-+...+|+|..++|+.++|++.+...++..|. +...++++-.++..++.|.++.+.+.+.=.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 445678999999999999999999999988775 6779999999999999999999999986544
No 259
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.17 Score=50.42 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=65.7
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 444 ~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
.....+..|+=..+...++|..|..+..+.|.++|.++-.+--+|.+|.++|.+.-|+.++...++..|+.
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 34456778888899999999999999999999999999999999999999999999999999999999985
No 260
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.00 E-value=0.14 Score=61.43 Aligned_cols=101 Identities=16% Similarity=0.053 Sum_probs=70.7
Q ss_pred HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 006908 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-- 479 (626)
Q Consensus 402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~-- 479 (626)
...|..++..|+++.|...|.+++......... .....++.++|.+++..|++..|...+.+++.+-..
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 345555566677777777777766643322111 112346788999999999999999999999876211
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908 480 ------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 480 ------~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~ 511 (626)
..-++..+|.++...|++++|...+.+++.+.
T Consensus 566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 23345678889999999999999999998863
No 261
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.94 E-value=0.051 Score=57.59 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=83.7
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-A 476 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~-~ 476 (626)
+..+..+.+..|-.|+|.+|.+.....--. ..+..-- .-.-....+++|+|-++++++.|.-++.+|.+||+ .
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~---~~~g~~~---T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~ 313 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIH---KEAGGTI---TPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS 313 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccc---cccCccc---cchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence 344556677778888888888776542210 1111000 00112345679999999999999999999999995 2
Q ss_pred C--------C---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908 477 N--------P---------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (626)
Q Consensus 477 d--------p---------~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~ 524 (626)
+ | ....-+|+.|..|..+|+.-.|.++|.+|...-..| +.+|--|+.
T Consensus 314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-PrlWLRlAE 377 (696)
T KOG2471|consen 314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-PRLWLRLAE 377 (696)
T ss_pred HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-cHHHHHHHH
Confidence 1 1 335689999999999999999999999999987776 455544443
No 262
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.93 E-value=0.15 Score=42.39 Aligned_cols=65 Identities=25% Similarity=0.338 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHH
Q 006908 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKLKKQRQ 530 (626)
Q Consensus 466 A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~-~~~~~~~l~~l~~~~~ 530 (626)
.+..+.++++.+|++..+.|.+|.+++..|++++|++.|-.++..+++. ...+++.+-.+-..+.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 4567888999999999999999999999999999999999999998865 2346565555544444
No 263
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.84 E-value=0.31 Score=46.17 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=77.5
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.-..+.+.|+.+++.|+++.|++.|.++..+... ......+++++-.+.+..++|..+..+..+|-.+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456778999999999999999999998875322 2345668889999999999999999999998665
Q ss_pred CC--CCH--H--HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 477 NP--AHV--K--GLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 477 dp--~~~--k--a~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
-. .++ + .....|.+++..++|..|-..|-.++.-
T Consensus 103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 32 222 2 2333567777889999998888776543
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.84 Score=46.02 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=75.8
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH-------
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK------- 472 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~------- 472 (626)
....++..+...+++..|...|..++. ..|.+ ..+..-+|.||+.+|+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~----~~~~~-----------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~ 200 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQ----AAPEN-----------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQD 200 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHH----hCccc-----------chHHHHHHHHHHHcCChHHHHHHHHhCcccchh
Confidence 345678889999999999999999999 44444 23566688888888888665443332
Q ss_pred ---------------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908 473 ---------------------------VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (626)
Q Consensus 473 ---------------------------aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P 512 (626)
.+..||++..+-|.+|..+...|++++|++.|-..++.|-
T Consensus 201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 201 KAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 2244688999999999999999999999998888887754
No 265
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.79 E-value=0.2 Score=60.12 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=80.2
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP-- 478 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp-- 478 (626)
+...|..++..|++..|...+.+++.......... ......++.++|.+++..|++++|...+.+++.+..
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ-------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 34557778899999999999999998654322111 011233567889999999999999999999987632
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908 479 ---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 479 ---~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~ 511 (626)
..+.++..+|.++...|++++|...+.+++.+.
T Consensus 607 ~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 607 QPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 235677789999999999999999999998763
No 266
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.27 Score=49.29 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=68.3
Q ss_pred hccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006908 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG 488 (626)
Q Consensus 409 f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g 488 (626)
.+..+|..|+++...-.+ ..|.+ ...+.-+|.||+...+|..|..+|++.-.+.|...+-.+..+
T Consensus 21 I~d~ry~DaI~~l~s~~E----r~p~~-----------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A 85 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELE----RSPRS-----------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA 85 (459)
T ss_pred HHHhhHHHHHHHHHHHHh----cCccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 455677777777665555 34433 345677999999999999999999999999999999989999
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 006908 489 MAYMALGEFEEAQRDFEMM 507 (626)
Q Consensus 489 ~a~~~lg~~~eA~~~~~kA 507 (626)
+.+++.+.|.+|++.....
T Consensus 86 QSLY~A~i~ADALrV~~~~ 104 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLL 104 (459)
T ss_pred HHHHHhcccHHHHHHHHHh
Confidence 9999999999999876644
No 267
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.65 E-value=0.59 Score=53.39 Aligned_cols=90 Identities=23% Similarity=0.252 Sum_probs=72.3
Q ss_pred hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHH
Q 006908 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-ANPAHVKGLYR 486 (626)
Q Consensus 408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~-~dp~~~ka~~~ 486 (626)
....++|.+|+....+.++ ..|+. ..+..--|..++++|++++|. .|-+++. ..+++-..+--
T Consensus 19 ~ld~~qfkkal~~~~kllk----k~Pn~-----------~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~ 82 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLK----KHPNA-----------LYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQF 82 (932)
T ss_pred HhhhHHHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHH
Confidence 4456789999999999998 45543 223344688899999999999 5555555 44566778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 487 RGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 487 ~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
+-.||..++++++|...|++|+..+|+
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 999999999999999999999999998
No 268
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.64 E-value=0.21 Score=58.16 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
..|..+..++.+.|+++.|...+++++.++|++...|..+.++|...|++++|.+.++...+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 457777778888899999999999988899988888888999999999999999888876654
No 269
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=0.45 Score=47.13 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=53.5
Q ss_pred HHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908 453 VAACLLKL----GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (626)
Q Consensus 453 la~~~~kl----~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l 525 (626)
||.++.++ +.+.+|.-.|+..=+.-|.++..+.-++.|++.+++|++|...++.||.-++++ ++...++-.+
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d-petL~Nliv~ 250 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD-PETLANLIVL 250 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-HHHHHHHHHH
Confidence 55555543 347778888887766566788888888999999999999999999999988876 5555444443
No 270
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.38 E-value=0.082 Score=36.35 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.+++|+|.+|..+|+|.+|+..+.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677777777777777777777777654
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=0.38 Score=47.01 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=65.5
Q ss_pred hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhC--
Q 006908 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL----DAN-- 477 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL----~~d-- 477 (626)
++......-+.+.|+++|++++.++..-. ...+...++...+..+.+++.|.+|...+.+-. ..+
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~d---------r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDD---------RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 33444445566777777777776543211 122334567778888999999999888777643 222
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~ 511 (626)
+...|++.-.-.+|+.+.+|..|...|+....+.
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 3445666666666777779999999999887774
No 272
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.18 E-value=0.15 Score=55.25 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=81.4
Q ss_pred hhhchhh-ccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006908 403 VTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (626)
Q Consensus 403 ~~Gn~~f-~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ 481 (626)
..+..|+ -+|+..+|+.+|..|+....... +-..++.+|.++.++|.-.+|--.+..|+.-.|.-.
T Consensus 217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~-------------kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t 283 (886)
T KOG4507|consen 217 NMASFYWRIKGEPYQAVECAMRALHFSSRHN-------------KDIALLSLATVLHRAGFSADAAVILHAALDDADFFT 283 (886)
T ss_pred HHHHHHHHHcCChhhhhHHHHHHhhhCCccc-------------ccchhhhHHHHHHHcccccchhheeehhccCCcccc
Confidence 3444444 57889999999999998433211 124677899999999999999888888887777666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006908 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516 (626)
Q Consensus 482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~ 516 (626)
.-+|-+|+++.++++|...+..|..|++.+|...+
T Consensus 284 ~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 284 SNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 67999999999999999999999999999997654
No 273
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.90 E-value=0.35 Score=38.66 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=52.7
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.+....+.|-.+|.+.+..+|+..++++|+... ..+ .+..++--++.+|...|+|.+++.+..+=+.+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~----~~~--------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT----DRE--------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC----ChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999432 221 13455666788888999999998887765544
No 274
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.76 E-value=1.2 Score=53.84 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~d-p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
.|+.+-.+|.+.|++++|+..+....+.+ +.+...|..+..+|.+.|++++|+..|++..+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 45556666777777777777777766655 335556666666666777777777766666554
No 275
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.67 E-value=0.18 Score=53.62 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=76.0
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHH-hcccC----CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR-DFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~-~l~~~----~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~ 469 (626)
+..+-.+.+.|-.+|+-+.|..++.+|.+||+ ....+ .|.. ..-....-...+.+|.|..|+..|+...|.++
T Consensus 280 ~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~--~~tls~nks~eilYNcG~~~Lh~grPl~AfqC 357 (696)
T KOG2471|consen 280 LSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK--TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC 357 (696)
T ss_pred hhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc--ceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence 34555667899999999999999999999996 22211 1111 00011223345789999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc
Q 006908 470 CNKVLDANPAHVKGLYRRGMAYMAL 494 (626)
Q Consensus 470 ~~~aL~~dp~~~ka~~~~g~a~~~l 494 (626)
+.++...-..|+.-|.|+|.|+++.
T Consensus 358 f~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 358 FQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999999999864
No 276
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.48 E-value=1.2 Score=47.60 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=89.8
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
+...|.---.++++..|...|.+||. ....+ .++|+.-|.|-+|.+....|....++|+.+-|.-
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALd----vd~r~-----------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALD----VDYRN-----------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHh----ccccc-----------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 33445555567889999999999998 33332 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
-+-||..-..--.||+..-|...|++-++..|+. .++...-...
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e--qaW~sfI~fE 184 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE--QAWLSFIKFE 184 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH--HHHHHHHHHH
Confidence 9999999888889999999999999999999984 3444443333
No 277
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=93.39 E-value=0.33 Score=42.14 Aligned_cols=117 Identities=20% Similarity=0.200 Sum_probs=75.2
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH----HHHH
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN----KVLD 475 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~----~aL~ 475 (626)
++...|+.+|+.+++-.|+-+|++|+.....+...++.+...+.-..+...-|+|.-+..+|+-+-.+++.. +++.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999766664333333333444455667789999999999988888765 4566
Q ss_pred hCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908 476 ANPAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (626)
Q Consensus 476 ~dp~~~ka~~~~g~a-~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~ 524 (626)
+-|..+..- ..+ --.+|--..|+-+| ++-.|+ +.+.+.++.
T Consensus 83 LiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHPN--P~iA~~vq~ 124 (140)
T PF10952_consen 83 LIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHPN--PEIARLVQH 124 (140)
T ss_pred hccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCCC--HHHHHHHHh
Confidence 666543211 111 11233333444444 455676 555555543
No 278
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.39 E-value=0.16 Score=34.81 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
+.++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 467899999999999999999999999876
No 279
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.37 E-value=1.6 Score=52.96 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~--dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
..|+.+..+|.+.|++++|+..+.+.... .| +...|..+..+|.+.|++++|++.|++...
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35666666677777777777777666543 23 456666677777777777777777776554
No 280
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.28 E-value=0.9 Score=46.44 Aligned_cols=94 Identities=10% Similarity=0.029 Sum_probs=73.3
Q ss_pred chhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHH
Q 006908 406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDANPAHVKGL 484 (626)
Q Consensus 406 n~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k-l~~~~~A~~~~~~aL~~dp~~~ka~ 484 (626)
+..-+.+..+.|...|.+|+. ... ....+|...|..-++ .++...|...++.++..-|.+...|
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~----~~~-----------~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~ 73 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARK----DKR-----------CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----CCC-----------S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHhCChHHHHHHHHHHHc----CCC-----------CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 344445558899999999985 211 123578878888666 5677779999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 485 YRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 485 ~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
..-..-+..+++.+.|+..|++++..-|..
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~ 103 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISSLPKE 103 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCTSSCH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcCch
Confidence 999999999999999999999999987764
No 281
>PLN03077 Protein ECB2; Provisional
Probab=93.11 E-value=1.3 Score=53.04 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
+|..+-.++...++.+.|...++++++++|+++..|..++++|...|+|++|.+..+...+
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 4444444455667777777778888888888888888888888888888888877766543
No 282
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.06 E-value=0.95 Score=42.52 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLD-ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~-~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
.-.+.+|.+...+|+|.+|...|.+++. +-..++..+.-++++.+.++++.+|...+++..+-+|..
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 3467799999999999999999999986 456788899999999999999999999999999988753
No 283
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.04 E-value=2.5 Score=45.10 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=56.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHH
Q 006908 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS---EPDATAALSKLKKQR 529 (626)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~---~~~~~~~l~~l~~~~ 529 (626)
|.-++-.|+|.+|.-++.=+.+++| ++.+|-.+|.|++...+|++|..+|... -|++ +..+++++..+++.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh~ 543 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQKHL 543 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHhh
Confidence 4446779999999999999999999 9999999999999999999999988753 3321 133555555554433
No 284
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.77 E-value=2.2 Score=41.63 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhh-chhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908 394 IMDEAEKIRVTG-NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (626)
Q Consensus 394 ~~~~a~~~k~~G-n~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~ 472 (626)
+++.|..+..+| |.+--.++|..|-..|.+|..+--.....+ -.+++|.-.+.||-+. +..+|+.++.+
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skh---------Daat~YveA~~cykk~-~~~eAv~cL~~ 98 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKH---------DAATTYVEAANCYKKV-DPEEAVNCLEK 98 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCch---------hHHHHHHHHHHHhhcc-ChHHHHHHHHH
Confidence 444454444444 444456678888888888776432222211 1356788888887655 89999999999
Q ss_pred HHHhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcC
Q 006908 473 VLDANPA------HVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 473 aL~~dp~------~~ka~~~~g~a~~~-lg~~~eA~~~~~kAl~l~ 511 (626)
++++--+ -++-+.-+|..|-. +.++++|+..|++|-+--
T Consensus 99 aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 99 AIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred HHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 9887432 13444455665554 488889999999887763
No 285
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=92.39 E-value=0.47 Score=50.71 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=67.9
Q ss_pred HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc--CC-----HHHHHH
Q 006908 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GE-----CRKSIE 468 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl--~~-----~~~A~~ 468 (626)
.......+.|-.+|..|+|.+|+..|+..|..+.-+.-.+.+|...++++...|.--+-.+.+.+ +. .+....
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR 281 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKR 281 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH
Confidence 33444556799999999999999999999987765555565666666665554432222222221 11 112222
Q ss_pred HHHHHH-----HhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 469 ACNKVL-----DANPAHVKGLYRRG-MAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 469 ~~~~aL-----~~dp~~~ka~~~~g-~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
.++-|. .+.|.+.---+|.| ...+++++|--|....++.|++.|..
T Consensus 282 ~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 282 NLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 222222 22333332223333 34567899999999999999999985
No 286
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.33 E-value=1.8 Score=42.97 Aligned_cols=88 Identities=19% Similarity=0.187 Sum_probs=68.9
Q ss_pred ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006908 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (626)
Q Consensus 412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~ 491 (626)
+++..|.-.|+..-.- ..| ...+.+.+|.|++.+++|++|......||.-+++.+.++-|+-.+-
T Consensus 187 ek~qdAfyifeE~s~k---~~~------------T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK---TPP------------TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred hhhhhHHHHHHHHhcc---cCC------------ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3577777777765541 112 1346777999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHH-HHHhcCCCC
Q 006908 492 MALGEFEEAQRDFE-MMMKVDKSS 514 (626)
Q Consensus 492 ~~lg~~~eA~~~~~-kAl~l~P~~ 514 (626)
..+|.-.++...+- +....+|.+
T Consensus 252 ~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999888776554 444456765
No 287
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.25 E-value=0.22 Score=34.04 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
.+|.++|-+.+...+|++|+.+|++||++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46888999999999999999999999876
No 288
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.23 E-value=2.4 Score=43.41 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=65.3
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCCh----------------h-----HHHHHh------hhhhHHHH
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD----------------E-----EGKVFV------GKRNLLHL 451 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~----------------e-----e~~~~~------~~~~~~~~ 451 (626)
+++...+..+|.+|++.+|...+.+.|..+ |.+- + -.+++. +...-++-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~----PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDY----PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHG 179 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhC----chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHH
Confidence 445566778899999999999999998843 2220 0 000000 11122233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506 (626)
Q Consensus 452 Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~k 506 (626)
-.|-|+...|-|.+|.+.+.+++++++.+.-|...++.++...+++.++++...+
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 3566666677777777777777777777777777777777777777777766554
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.10 E-value=1.6 Score=45.75 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=77.5
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHH-hcccC-CCCChh-----------------HHHHHhhhhhHHHHHHHHHHHHc-
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLR-DFNHV-NPQDDE-----------------EGKVFVGKRNLLHLNVAACLLKL- 460 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~-~l~~~-~p~~~e-----------------e~~~~~~~~~~~~~Nla~~~~kl- 460 (626)
..+.+..++.+|+..+|+...+..+. .+... .+.... .........+.+++-+|.-...+
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~ 266 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY 266 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence 34556666777777888888877776 32211 000000 01112344566777777777777
Q ss_pred -----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhcCCC
Q 006908 461 -----GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF-----------------EEAQRDFEMMMKVDKS 513 (626)
Q Consensus 461 -----~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~-----------------~eA~~~~~kAl~l~P~ 513 (626)
+.+..++..|..++.++|.+.++|++.|..+..+=+. ..|+..|-+|+.+.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7899999999999999999999999999988765222 3478888888888776
No 290
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.08 E-value=1 Score=48.57 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=72.5
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-NP 478 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~-dp 478 (626)
..+..|..+.+.|+.++|++.|+..++.+ |..+ ...++.|+..|++.++.|.++.....+-=.+ -|
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~----p~~~---------~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEF----PNLD---------NLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhC----Cccc---------hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 34568889999999999999999999843 3211 2458999999999999999998877764222 25
Q ss_pred CCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhcCCCC
Q 006908 479 AHVKGLYRRGMAYMA-LGE---------------FEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 479 ~~~ka~~~~g~a~~~-lg~---------------~~eA~~~~~kAl~l~P~~ 514 (626)
.++.-.|..|....+ .++ -..|++.+.+|.+.||.-
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 566555655543322 111 134788999999999864
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.94 E-value=0.83 Score=45.80 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=60.5
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908 437 EEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507 (626)
Q Consensus 437 ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kA 507 (626)
.+.+-+..+...++.-.|..|++.+.|.+|+..|++++.++|-+-..+.-+-+.+..+|+--.|...|++.
T Consensus 269 dererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 269 DERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445556666777778999999999999999999999999999999999999999999987787777654
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.83 E-value=4.6 Score=41.15 Aligned_cols=88 Identities=18% Similarity=0.309 Sum_probs=68.1
Q ss_pred hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---C
Q 006908 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDA----NP---A 479 (626)
Q Consensus 408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-~~~~A~~~~~~aL~~----dp---~ 479 (626)
..++|+++.|..+|.|+-..+....|.. ....+..++|.|...++.+ +|..|....++|+++ .. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~-------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~ 75 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM-------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL 75 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHH-------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence 4678999999999999988665444433 3345778999999999999 999999999999887 21 1
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHH
Q 006908 480 -------HVKGLYRRGMAYMALGEFEEAQR 502 (626)
Q Consensus 480 -------~~ka~~~~g~a~~~lg~~~eA~~ 502 (626)
..+.+..++++|...+.++...+
T Consensus 76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 76 SPDGSELRLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 14567788999999888764433
No 293
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.80 E-value=0.65 Score=48.57 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=77.0
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-- 477 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d-- 477 (626)
.+.+.|..|...|++..|+++|.++-.++.+ .+..+..+.|+-.+-+-+++|.....+..+|...-
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~ 219 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTS------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA 219 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcc------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence 4557888888999999999999998876553 23345678888888899999999999888887651
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 478 ------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508 (626)
Q Consensus 478 ------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl 508 (626)
.-.++.....|.|++.+++|..|.+.|-.+.
T Consensus 220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1235677788999999999999999886553
No 294
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.79 E-value=2.1 Score=43.37 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=65.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 440 KVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 440 ~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
..+.+....++.-++..+...++++.++...++.+.++|-+-++|.++-.+|+..|+...|+..|++.-++
T Consensus 146 ~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 146 RALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34566778899999999999999999999999999999999999999999999999999999999987663
No 295
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.78 E-value=3.2 Score=37.48 Aligned_cols=73 Identities=23% Similarity=0.278 Sum_probs=51.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--------C--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 453 VAACLLKLGECRKSIEACNKVLDANP--------A--------------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~aL~~dp--------~--------------~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
.|......++...++..+.+++.+-. . ...++.+++.++...|++++|+..+++++.+
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 45555667788888888888886641 1 1457777888899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 006908 511 DKSSEPDATAALSKLK 526 (626)
Q Consensus 511 ~P~~~~~~~~~l~~l~ 526 (626)
+|-++ .+...+-.+.
T Consensus 92 dP~~E-~~~~~lm~~~ 106 (146)
T PF03704_consen 92 DPYDE-EAYRLLMRAL 106 (146)
T ss_dssp STT-H-HHHHHHHHHH
T ss_pred CCCCH-HHHHHHHHHH
Confidence 99984 4555544443
No 296
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.36 E-value=1.9 Score=35.98 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=46.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908 457 LLKLGECRKSIEACNKVLDANPA---------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 457 ~~kl~~~~~A~~~~~~aL~~dp~---------~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~ 511 (626)
.++.++|..|++.+.+.+..... ..-|+.++|..+...|++++|+..++.|+.+-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 46789999999988888765321 14688999999999999999999999999984
No 297
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=91.09 E-value=2 Score=50.04 Aligned_cols=77 Identities=12% Similarity=-0.008 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
.|..+..++.+.|++++|.+.+.+. ...| +...|..+..++...|+++.|...++++++++|++ ......|..+...
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~-~~~y~~L~~~y~~ 540 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNNYVVLLNLYNS 540 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC-CcchHHHHHHHHh
Confidence 5677888888899999998877654 2233 56678888889999999999999999999999976 3344444444433
No 298
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.99 E-value=3.2 Score=44.44 Aligned_cols=138 Identities=19% Similarity=0.246 Sum_probs=80.3
Q ss_pred ccccHHHHHHHHHHHHHhcccCCCCChhHHHHH----------hhhhhHHHHHHHHH------------HHHcCCHHHHH
Q 006908 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF----------VGKRNLLHLNVAAC------------LLKLGECRKSI 467 (626)
Q Consensus 410 ~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~----------~~~~~~~~~Nla~~------------~~kl~~~~~A~ 467 (626)
...+.+.+.+.|+.+|.++++..-.-..-+.+. ...+..+-+.+|.| -+++++|+.|.
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 356788899999999995443221111101000 00011111222222 35577888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 006908 468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP-DATAALSKLKKQRQEVESKARKQFKGLFDK 546 (626)
Q Consensus 468 ~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 546 (626)
..|.+-|+..|.|.-+|...|..-..||+.+.|.+.|.-|+....-+.+ -+++..-...-.. ..-++.|+.|..+++.
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~-~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEE-GEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc-chHHHHHHHHHHHHHh
Confidence 8888888888888888888888888889998888888888765321111 1222211111111 1234567788777665
Q ss_pred CC
Q 006908 547 KP 548 (626)
Q Consensus 547 ~~ 548 (626)
.+
T Consensus 537 t~ 538 (677)
T KOG1915|consen 537 TQ 538 (677)
T ss_pred cc
Confidence 43
No 299
>PRK10941 hypothetical protein; Provisional
Probab=90.98 E-value=1.6 Score=44.13 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=65.0
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
..-+.+.=..+.+.++|+.|+++-...+. +.|+++.+ +--+|.+|.+++.+..|+.+++.-++..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~dp~e-----------~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQ----FDPEDPYE-----------IRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHH----hCCCCHHH-----------HHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 33445566678899999999999999999 78887543 3348999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAY 491 (626)
Q Consensus 478 p~~~ka~~~~g~a~ 491 (626)
|+.+.+..-+.+..
T Consensus 246 P~dp~a~~ik~ql~ 259 (269)
T PRK10941 246 PEDPISEMIRAQIH 259 (269)
T ss_pred CCchhHHHHHHHHH
Confidence 99988776665544
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.96 E-value=2.1 Score=40.57 Aligned_cols=105 Identities=15% Similarity=0.251 Sum_probs=73.3
Q ss_pred hhhchhhcccc---HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhh-h-----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908 403 VTGNRLFKEGK---FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKR-N-----LLHLNVAACLLKLGECRKSIEACNKV 473 (626)
Q Consensus 403 ~~Gn~~f~~g~---~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~-~-----~~~~Nla~~~~kl~~~~~A~~~~~~a 473 (626)
--|..+++..+ ...|...|.+++..+..-.|.....-+.+..-. . ..-+-+|..+...+++++|+..+..+
T Consensus 36 lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~ 115 (207)
T COG2976 36 LFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQA 115 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34556665554 447889999999876555553333223332222 1 23456788899999999999999999
Q ss_pred HHhCC-CCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908 474 LDANP-AHVK--GLYRRGMAYMALGEFEEAQRDFEMM 507 (626)
Q Consensus 474 L~~dp-~~~k--a~~~~g~a~~~lg~~~eA~~~~~kA 507 (626)
|..-. .+.+ +-.|+|+++..++.+++|+..+...
T Consensus 116 l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 116 LAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 96543 3455 4578999999999999999987754
No 301
>PLN03077 Protein ECB2; Provisional
Probab=90.57 E-value=2.4 Score=50.73 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=70.5
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCCh---------------hH-HHHHhhh--------hhHHHHHHHH
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD---------------EE-GKVFVGK--------RNLLHLNVAA 455 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~---------------ee-~~~~~~~--------~~~~~~Nla~ 455 (626)
.+....+.+.+.|+.++|+..|++.... .+.|+.. ++ ...+..+ ....|..+..
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 3555667788889999999999887651 2333321 11 0111111 1124566666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 456 ~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
++.+.|++++|...+++. .+.| ++..|-.+-.++...++.+.|....+++++++|++ ......|..+..
T Consensus 634 ~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~-~~~y~ll~n~ya 702 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNS-VGYYILLCNLYA 702 (857)
T ss_pred HHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-cchHHHHHHHHH
Confidence 666777777776666553 2334 34445555555666667777777777777777775 344445554443
No 302
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.52 E-value=1.1 Score=37.39 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=47.3
Q ss_pred hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
..+.++|..|++.+.+..+.......... ......+.+|+|.++...|++++|+..+++|+.+-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45789999999999988875332211110 11234568899999999999999999999998764
No 303
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=90.27 E-value=3.4 Score=40.56 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=70.2
Q ss_pred hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH-HHHH-HHHHHHHH-hC-CCCHHH
Q 006908 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC-RKSI-EACNKVLD-AN-PAHVKG 483 (626)
Q Consensus 408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~-~~A~-~~~~~aL~-~d-p~~~ka 483 (626)
+|..|+|+.|+....-||..=- ..|+.- ...+-.+.+.-.++-|...++.|.. +-+. ..+..+.. .+ |+-+.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l-~~Pd~f--~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGL-TMPDQF--RRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCC-CCCccc--cCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 4678899999999999998411 122210 0011122233345566666777752 2221 11222211 11 444555
Q ss_pred --HHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908 484 --LYRRGMAYM---------ALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE 531 (626)
Q Consensus 484 --~~~~g~a~~---------~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~ 531 (626)
|--.|.++. ..++...|+..|++|+.++|+ .-++..++++.+.++.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k--~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK--CGVKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC--CChHHHHHHHHHHHhh
Confidence 444455552 456788999999999999987 4688888888877763
No 304
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.90 E-value=2.8 Score=44.49 Aligned_cols=103 Identities=12% Similarity=0.138 Sum_probs=75.8
Q ss_pred cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH---------Hh-----
Q 006908 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL---------DA----- 476 (626)
Q Consensus 411 ~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL---------~~----- 476 (626)
...|.++-..|..++... +|..--.--...+..+..++.++.++..+|++..|.+.+++|| ..
T Consensus 7 s~~Y~~~q~~F~~~v~~~---Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~ 83 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSH---DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS 83 (360)
T ss_pred CHHHHHHHHHHHHHHHcc---CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 456788888888887721 1111000111233456788899999999999999999999987 11
Q ss_pred CC------------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006908 477 NP------------AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516 (626)
Q Consensus 477 dp------------~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~ 516 (626)
++ .| ..|+||..+++.+.|-+.-|+++++-.+.+||.+++
T Consensus 84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 21 22 569999999999999999999999999999999543
No 305
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.53 E-value=0.63 Score=45.07 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=52.0
Q ss_pred chhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 406 n~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
..+++.++++.|.+.|.+|+. +.|.. ..-|+.+|....|.|++..|.+.+.++|++||.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~----lap~w-----------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALE----LAPEW-----------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhh----cCchh-----------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 456788999999999999999 55543 4578889999999999999999999999999865
No 306
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.48 E-value=3.1 Score=46.02 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~------~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
.+++-|-|.-++++++|..+++.|...|..-|. .+|....++.||..+.++|.|+++++.|-+.+|.+
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~ 427 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS 427 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence 356678899999999999999999999976553 37888889999999999999999999999999987
No 307
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.28 E-value=5.4 Score=39.24 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=60.6
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-- 477 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d-- 477 (626)
.+-..++.+-..++|++|..+..+|....+.-... + ..+..|-..|+...++..|.++...+++|..+-
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl-------f--hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL-------F--HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH-------H--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33334444556678888888888888643321110 1 123445556666667777888888888876653
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 478 ---PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 478 ---p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
|+.+-.-.-++--....-+.++|+..|++++.+
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralav 139 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAV 139 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 333333333333344556677888888887776
No 308
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.16 E-value=1.6 Score=44.71 Aligned_cols=82 Identities=17% Similarity=0.192 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 006908 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH----VKGLYRR 487 (626)
Q Consensus 412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~----~ka~~~~ 487 (626)
|-|.+|.+.-.+|++ +++.+ +-+....|.++-..+++.++.+...+.-..-... .--|..-
T Consensus 189 g~y~dAEk~A~ralq----iN~~D-----------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~ 253 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQ----INRFD-----------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT 253 (491)
T ss_pred ccchhHHHHHHhhcc----CCCcc-----------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH
Confidence 345555555555555 44444 2234456777777899999998877653222111 2346667
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 006908 488 GMAYMALGEFEEAQRDFEMMM 508 (626)
Q Consensus 488 g~a~~~lg~~~eA~~~~~kAl 508 (626)
|.+|..-++|+.|+..|.+-+
T Consensus 254 Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 254 ALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhhhcccchhHHHHHHHHHH
Confidence 889999999999999998754
No 309
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.54 E-value=1.5 Score=46.76 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q 006908 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 444 ~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~-lg~~~eA~~~~~kAl~l~P~ 513 (626)
...+++++.+|-||+.+++|.+|+..+..+|..-...-..+..+..-+-. .+..|+....+--++.+.|.
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 34567889999999999999999999999985421111111222212211 34556677777777888885
No 310
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.32 E-value=2.3 Score=37.87 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~ 487 (626)
+.+-+|..|+++++|.+++.+++..|+.+|+|..|.-..
T Consensus 73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 556699999999999999999999999999998775443
No 311
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.25 E-value=6 Score=42.59 Aligned_cols=99 Identities=21% Similarity=0.290 Sum_probs=74.5
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD- 475 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~- 475 (626)
.+....-.|-....-+.|+.|...|..|.+.... ..+.+.+-.|+|..|++.++-+. +.++++
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~ 429 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKALDL 429 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHHHHh
Confidence 4555666777777788899999999999984321 33567788999999999776443 333333
Q ss_pred hCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908 476 ANPAH----------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 476 ~dp~~----------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~ 511 (626)
+.|.| +.++|-.|.-.+..+++.||+..+.+.|++.
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 34543 4578889999999999999999999998875
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.21 E-value=4.5 Score=37.29 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
...+..+..+-++.++..++...+.-+-.+.|+++..-.--|..|+..|+|.+|+..|+.+..-.|.+ +-++..+..+-
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL 88 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHH
Confidence 34556667777778888888887777777888888888888888888888888888888877766665 66666666665
Q ss_pred HHH
Q 006908 527 KQR 529 (626)
Q Consensus 527 ~~~ 529 (626)
..+
T Consensus 89 ~~~ 91 (160)
T PF09613_consen 89 YAL 91 (160)
T ss_pred HHc
Confidence 433
No 313
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.15 E-value=5.8 Score=43.75 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~----~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
.-.++..|..+...|+.++|+..+++++..... ..-++|.+|.+++.+.+|++|..+|.+.++.+.-
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 446788999999999999999999999854332 2457999999999999999999999999987644
No 314
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.09 E-value=3.9 Score=39.95 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
+..|-.++..++......-+..|+..|.+|+..-.. |.... -...+.+-+|..+.++|++++|+..+.+++
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~--~~~~~-------~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF--PIEGM-------DEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC--CCCCc-------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334455556666555555577788888888763221 11110 113467779999999999999999999999
Q ss_pred HhCCCCH-HHHHHHHHHH
Q 006908 475 DANPAHV-KGLYRRGMAY 491 (626)
Q Consensus 475 ~~dp~~~-ka~~~~g~a~ 491 (626)
.....+. ..+.++|+-+
T Consensus 193 ~~~~~s~~~~l~~~AR~~ 210 (214)
T PF09986_consen 193 GSKKASKEPKLKDMARDQ 210 (214)
T ss_pred cCCCCCCcHHHHHHHHHH
Confidence 7653332 3555555533
No 315
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.55 E-value=0.75 Score=28.34 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 006908 482 KGLYRRGMAYMALGEFEEAQRDFE 505 (626)
Q Consensus 482 ka~~~~g~a~~~lg~~~eA~~~~~ 505 (626)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356666777777777777766554
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.25 E-value=12 Score=38.93 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=84.9
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
.+..+...+..+.+.|+|..|.....++.......... ...+.+-.|..+...|+..+|+......+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667788888999999999999999888733211111 1234555677777788888888887777661
Q ss_pred --C--------------------------------CCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCHH
Q 006908 477 --N--------------------------------PAHVKGLYRRGMAYMAL------GEFEEAQRDFEMMMKVDKSSEP 516 (626)
Q Consensus 477 --d--------------------------------p~~~ka~~~~g~a~~~l------g~~~eA~~~~~kAl~l~P~~~~ 516 (626)
. ...+++++.+|.-...+ +.+++++..|+.|++++|.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~- 292 (352)
T PF02259_consen 214 RLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE- 292 (352)
T ss_pred HhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH-
Confidence 0 01257888888888888 889999999999999999874
Q ss_pred HHHHHHHHHHH
Q 006908 517 DATAALSKLKK 527 (626)
Q Consensus 517 ~~~~~l~~l~~ 527 (626)
.+...++....
T Consensus 293 k~~~~~a~~~~ 303 (352)
T PF02259_consen 293 KAWHSWALFND 303 (352)
T ss_pred HHHHHHHHHHH
Confidence 35555554443
No 317
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.15 E-value=7.1 Score=38.84 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=78.6
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hC-
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD----AN- 477 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~----~d- 477 (626)
...+.+.-.|.|.-.+..|.+.++..+ +.+ ..+...++...++.|+.+.|..+++++-. ++
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~---e~~-----------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~ 247 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYP---EQE-----------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG 247 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCC---ccc-----------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc
Confidence 345566666777777777777777211 211 34667789999999999999999995532 33
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 478 -PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 478 -p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
..+.-.+.+.+..|...++|-+|...|.+.+..||.+ +.+.++-+.+..
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~-~~a~NnKALcll 297 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN-AVANNNKALCLL 297 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc-hhhhchHHHHHH
Confidence 2345567778888888899999999999999999987 455555444443
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.63 E-value=1 Score=31.85 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 485 YRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 485 ~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
+.+|.+|..+|+++.|+..++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6778888888888888888888884
No 319
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=86.50 E-value=1.6 Score=44.24 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR-RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~-~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
.+|..-+.-..+.+.|.+.-..|.++|...|.|+.-|.. .+.-+...++++.|++.|.++|.++|.+ +.++.+.-+++
T Consensus 108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~-p~iw~eyfr~E 186 (435)
T COG5191 108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS-PRIWIEYFRME 186 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC-chHHHHHHHHH
Confidence 456666666677889999999999999999999998876 5667788899999999999999999998 67777665543
No 320
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=86.48 E-value=4.1 Score=35.44 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=54.0
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
-+--....+...|+|++++..-.+||.+++....-++++. ++-+.+-+|+|.++--+|+.++|+..+..+-++
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3444566677889999999999999999886544443433 344667889999999999999999999988653
No 321
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.46 E-value=2.1 Score=28.83 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 006908 482 KGLYRRGMAYMALGEFEEAQRD--FEMMMKVDKS 513 (626)
Q Consensus 482 ka~~~~g~a~~~lg~~~eA~~~--~~kAl~l~P~ 513 (626)
+.+|-+|-.+...|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566677777777777777777 4366666654
No 322
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=86.31 E-value=7.9 Score=46.84 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~--~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~ 523 (626)
..+|...|..+++.++-++|.....+||..-|. +....-.-|+.-++.|+-+.++..|+-.|.-.|.- .++|..+.
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-tDlW~VYi 1641 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-TDLWSVYI 1641 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-hhHHHHHH
Confidence 346677777777777777777777777777776 66677777777777787777777777777777764 45554443
No 323
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.29 E-value=3.7 Score=47.06 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=75.6
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH-----cC--CHHHHH
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-----LG--ECRKSI 467 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k-----l~--~~~~A~ 467 (626)
+.......+.|-.++..|+|.+|+++|+.+|-.+.-+.-++.++.....++...+.--+...... ++ ....++
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 56677778899999999999999999999987544333344444444444444332112111111 21 233331
Q ss_pred H--HHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 468 E--ACNKVLDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 468 ~--~~~~aL~~dp~~-~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+ .|=.-..+.|-+ .-|+...-++++++++|..|.....+.|++.|..
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence 1 111112344543 4455556678999999999999999999999975
No 324
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.20 E-value=28 Score=32.18 Aligned_cols=111 Identities=16% Similarity=0.134 Sum_probs=78.0
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
...+.+......+.++...+...+.. ++. +.|... .+-.--|..++..++|.+|+..++.+.+-.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~A-Lrv---LRP~~~-----------e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDA-LRV---LRPEFP-----------ELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHH-HHH---hCCCch-----------HHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 44555666666677788887777653 433 556553 245557888999999999999999998888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
|..+-+--.++.|+..+++.+-=. +-..+++..++ +++......+.
T Consensus 75 ~~~p~~kALlA~CL~~~~D~~Wr~-~A~evle~~~d--~~a~~Lv~~Ll 120 (160)
T PF09613_consen 75 PGFPYAKALLALCLYALGDPSWRR-YADEVLESGAD--PDARALVRALL 120 (160)
T ss_pred CCChHHHHHHHHHHHHcCChHHHH-HHHHHHhcCCC--hHHHHHHHHHH
Confidence 988877777889999999876422 34556776665 45555555443
No 325
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=86.17 E-value=2.5 Score=33.92 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~ 430 (626)
..|..+..+|..+=+.|+|.+|+.+|..||..|..
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999999999997654
No 326
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.96 E-value=2.1 Score=34.06 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccC
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~ 431 (626)
.+.|..+..+|..+=+.|+|.+|+.+|++|+..|..+
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3467788889999999999999999999999876543
No 327
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.95 E-value=14 Score=40.79 Aligned_cols=113 Identities=19% Similarity=0.303 Sum_probs=66.0
Q ss_pred cchhhHHHHhhcCCCCCEEEEEecCCCccccCCCCCCCCCCcceeeeeeecccccCCCCCCCChhhHHHHHHHHHhhhch
Q 006908 328 LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNR 407 (626)
Q Consensus 328 ~v~~gle~~l~~M~~GE~~~~~i~~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~ 407 (626)
+.-..|..++..|-++.+..+.+..-| -.+..++.|...+.+|..
T Consensus 256 qaq~~F~~av~~~d~n~v~~lL~ssPY-----------------------------------HvdsLLqva~~~r~qgD~ 300 (665)
T KOG2422|consen 256 QAQRDFYLAVIVHDPNNVLILLISSPY-----------------------------------HVDSLLQVADIFRFQGDR 300 (665)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccCCc-----------------------------------chhHHHHHHHHHHHhcch
Confidence 456678888888888888877763211 224456667766666665
Q ss_pred hhccccHHHHHHHHHHHHHhcccC------CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 408 LFKEGKFELAKAKYEKVLRDFNHV------NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 408 ~f~~g~~~~A~~~y~~al~~l~~~------~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
-...+-.++|+-.+.+|+.-.-.. .|....+...+- .+++.--.-.-+.|.|.-|.+.|.-+|.++|.
T Consensus 301 e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~Fy----L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 301 EMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFY----LALFRYMQSLAQRGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHH----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence 555555555665666655411000 011111122211 12222223344689999999999999999987
No 328
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=85.78 E-value=10 Score=46.01 Aligned_cols=67 Identities=15% Similarity=0.012 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
++|..|+-.|.+-+.+++|.+.++..++---+..+.|.+.|..++...+-++|...+++||+.-|..
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 4677788889999999999999999998877889999999999999999999999999999999873
No 329
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=85.68 E-value=8.9 Score=40.27 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=76.0
Q ss_pred hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006908 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487 (626)
Q Consensus 408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~ 487 (626)
....|+|+.|+++......... +.++ .....++.++...|+..+ --+...|..+..+++++.|+.+.+-.--
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~v-ie~~------~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~A 269 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKV-IEKD------VAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVA 269 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHh-hchh------hHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHH
Confidence 4456777777777766554211 1111 122233444444444333 3468999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908 488 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (626)
Q Consensus 488 g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l 525 (626)
+.+++..|+..++-..++.+-+.+|. +++......+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePH--P~ia~lY~~a 305 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPH--PDIALLYVRA 305 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCC--hHHHHHHHHh
Confidence 99999999999999999999999997 4555554443
No 330
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=85.68 E-value=2.1 Score=34.22 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~ 430 (626)
++.|..+..+|...=..|+|++|+.+|..||..|..
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 567788888999999999999999999999997654
No 331
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=85.48 E-value=2.4 Score=33.83 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~ 430 (626)
+..|..+..+|...=+.|+|.+|..+|..+++.|..
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456777888888888999999999999999998765
No 332
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.65 E-value=11 Score=43.16 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=92.4
Q ss_pred CChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCC---CCCh--------hHHHHHhhhhhHHHHHHHHHH
Q 006908 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---PQDD--------EEGKVFVGKRNLLHLNVAACL 457 (626)
Q Consensus 389 ~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~---p~~~--------ee~~~~~~~~~~~~~Nla~~~ 457 (626)
++.++..-.+- .--|-.....+..++|.+++.++++.+.... +... +.......+...++..++.|.
T Consensus 294 l~~~~l~~L~y--~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~ 371 (608)
T PF10345_consen 294 LPKEELYALVY--FLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN 371 (608)
T ss_pred cCHHHHHHHHH--HHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45555544433 3346666677777799999999998776654 1111 112234456677888899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCCHHHHHH
Q 006908 458 LKLGECRKSIEACNKVLDANP---------AHVKGLYRRGMAYMALGEFEEAQRDFE--------MMMKVDKSSEPDATA 520 (626)
Q Consensus 458 ~kl~~~~~A~~~~~~aL~~dp---------~~~ka~~~~g~a~~~lg~~~eA~~~~~--------kAl~l~P~~~~~~~~ 520 (626)
+-+++|..|......+..... -.+..+|-.|..+...|+.+.|+..|. .+....+.++-.+-.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 999999999999888776532 247789999999999999999999998 555556655333333
Q ss_pred HHH
Q 006908 521 ALS 523 (626)
Q Consensus 521 ~l~ 523 (626)
.|.
T Consensus 452 ~LN 454 (608)
T PF10345_consen 452 ALN 454 (608)
T ss_pred HHH
Confidence 333
No 333
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.43 E-value=4.1 Score=32.64 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=30.4
Q ss_pred HHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~ 430 (626)
..|..+..+|..+=+.|+|.+|+.+|..|+.+|..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45777888899999999999999999999997653
No 334
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=83.95 E-value=12 Score=41.33 Aligned_cols=103 Identities=22% Similarity=0.090 Sum_probs=74.1
Q ss_pred hhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHH
Q 006908 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS-IEACNKVLDANPAHVKGLY 485 (626)
Q Consensus 407 ~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A-~~~~~~aL~~dp~~~ka~~ 485 (626)
.++..+....|+.....++. .+|.+ +.++.|+|.+....+..-.+ ...+..++...|+|...+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~----~~~~~-----------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 76 LLAPLADSTLAFLAKRIPLS----VNPEN-----------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred hccccccchhHHHHHhhhHh----cCccc-----------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 33444455555555555555 44443 67899999998887765554 4555568999999988777
Q ss_pred HH------HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908 486 RR------GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (626)
Q Consensus 486 ~~------g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l 525 (626)
.+ ++.+..+++..+|..++.++..+.|.+ +.+...+...
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~-~~~~~~~~~~ 185 (620)
T COG3914 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY-PRVLGALMTA 185 (620)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh-hhhHhHHHHH
Confidence 76 888889999999999999999999997 4444444333
No 335
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.51 E-value=8.5 Score=43.42 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=72.6
Q ss_pred hhhchhhccc-----cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 006908 403 VTGNRLFKEG-----KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVL 474 (626)
Q Consensus 403 ~~Gn~~f~~g-----~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~---~~~~A~~~~~~aL 474 (626)
..|..|++.. ++..|+.+|.+|.. .... .+.+++|.|+..-. ++..|..++..|.
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~----~g~~-------------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAE----LGNP-------------DAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHh----cCCc-------------hHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 4666666532 78899999999988 3322 26778999988766 6789999999886
Q ss_pred HhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 006908 475 DANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDK 512 (626)
Q Consensus 475 ~~dp~~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l~P 512 (626)
.. .+..|.|++|.||.. ..+...|..+|++|.+.++
T Consensus 356 ~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 356 KA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred Hc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 54 689999999999986 3678999999999999884
No 336
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=83.04 E-value=3.7 Score=32.64 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~ 430 (626)
++.|..+...|...=+.|+|++|+.+|..|+..|..
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456777778888888899999999999999987654
No 337
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.71 E-value=2 Score=45.90 Aligned_cols=59 Identities=22% Similarity=0.472 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 450 HLNVAACLLKLGECRKSIEACNKVLDAN---------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~d---------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
..-+..++.-+|+|..|++..+.+ .++ +.++..+|..|-||+++++|.+|++.|...|-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788899999999976653 222 35678899999999999999999999998774
No 338
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=82.70 E-value=3.7 Score=32.72 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (626)
Q Consensus 394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~ 430 (626)
.++.|..+..+|...=..|+|++|+.+|.+|+..|..
T Consensus 2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999999999999999997654
No 339
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=82.62 E-value=14 Score=38.03 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=82.9
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHH--HHHHHHHHHH
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK--SIEACNKVLD 475 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~--A~~~~~~aL~ 475 (626)
|..=.+-|-.+....+|..|..+|-.|.+-+..+...- ..+ +.+--+-.|...++..++ ++-....+++
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v-------~A~--~sLKYMlLcKIMln~~ddv~~lls~K~~l~ 279 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV-------KAL--TSLKYMLLCKIMLNLPDDVAALLSAKLALK 279 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHccccccCCcH-------HHH--HHHHHHHHHHHHhcCHHHHHHHHhhHHHHh
Confidence 44445677777888899999999999998776554321 111 122224456666666655 4555667888
Q ss_pred hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908 476 ANPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (626)
Q Consensus 476 ~dp~~~ka~~~~g~a~~~--lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~ 529 (626)
++.....|+--.+.|+.+ +.+|+.|++.|++=|.-|| -++.++..+...+
T Consensus 280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~----ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP----IVRSHLQSLYDNL 331 (411)
T ss_pred ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh----HHHHHHHHHHHHH
Confidence 888899999999999875 6889999999999888764 4666666655433
No 340
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.45 E-value=2.6 Score=28.81 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
.+|..+|-+.+..++|..|+.++.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 378889999999999999999999999864
No 341
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.18 E-value=5 Score=40.16 Aligned_cols=65 Identities=12% Similarity=0.214 Sum_probs=50.5
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
..+.|.++|+.|+|++|+.+|+.++..+..- -...+...++..+..|+.++++.+..+..|-+.+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRRE---------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3478999999999999999999997643311 1234556688889999999999999988887765
No 342
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=81.95 E-value=13 Score=30.86 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 418 ~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
+...++++. .+|.+ ..+.+.+|.+++..|+|+.|++.+-.++..++.+
T Consensus 8 ~~al~~~~a----~~P~D-----------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALA----ANPDD-----------LDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHH----HSTT------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 445566666 56766 3477889999999999999999999999998865
No 343
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.53 E-value=9.8 Score=43.67 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=28.6
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcc
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~ 429 (626)
.++.++..|+.+|++|+|++|...|-+++..++
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 356678899999999999999999999987543
No 344
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=81.26 E-value=13 Score=44.25 Aligned_cols=104 Identities=14% Similarity=0.271 Sum_probs=70.8
Q ss_pred hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHh
Q 006908 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----G---ECRKSIEACNKVLDA 476 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl----~---~~~~A~~~~~~aL~~ 476 (626)
-.+.+...+.|++|+..|++.-. ..|.-.|-. .+.+.+|.+.+.. + .|.+|+.-+++. .-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 547 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRE----SFPGRKEGY--------EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HG 547 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhh----cCCCcccch--------HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cC
Confidence 34455667789999999999887 344432211 1334455554432 2 467777777663 33
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006908 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 521 (626)
Q Consensus 477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~ 521 (626)
-|.-+--|.-.|.+|..+++|++-+++|.-|++--|.+ +.+-..
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 591 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQH-PEISRL 591 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCC-CccHHH
Confidence 45667778889999999999999999999999998876 443333
No 345
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=80.63 E-value=17 Score=38.92 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=46.0
Q ss_pred HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 006908 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--LGECRKSIEACNKVL 474 (626)
Q Consensus 397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k--l~~~~~A~~~~~~aL 474 (626)
.+.....++..+|+.++|..|.+.+...+.- -|.... ...+.+++.+|.. .-+|.+|...++..+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~---------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRR----LPGREE---------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh---------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3456667888999999999999999998872 222211 2455666666654 556788888777665
Q ss_pred H
Q 006908 475 D 475 (626)
Q Consensus 475 ~ 475 (626)
.
T Consensus 197 ~ 197 (379)
T PF09670_consen 197 K 197 (379)
T ss_pred H
Confidence 4
No 346
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=80.60 E-value=4 Score=31.84 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcc
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~ 429 (626)
++.|..+..+|..+=+.|+|.+|+.+|.+|+..|.
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45677788888888899999999999999998664
No 347
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.54 E-value=15 Score=39.65 Aligned_cols=100 Identities=17% Similarity=0.078 Sum_probs=79.2
Q ss_pred HHHHHHhhhchhh-ccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 006908 397 EAEKIRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVL 474 (626)
Q Consensus 397 ~a~~~k~~Gn~~f-~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-~~~~A~~~~~~aL 474 (626)
+|....+.|..+| -..+++.|..+.++|......+... ...+...+.-+|.||.... .+..|.....+|+
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--------ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkai 116 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--------YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAI 116 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--------HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 4566667776655 6889999999999999876654332 2344567778999999988 8999999999999
Q ss_pred HhCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 006908 475 DANPAH----VKGLYRRGMAYMALGEFEEAQRDF 504 (626)
Q Consensus 475 ~~dp~~----~ka~~~~g~a~~~lg~~~eA~~~~ 504 (626)
++..++ .|-++.+++.+.-..+|.-|++.+
T Consensus 117 elsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 117 ELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 997554 477889999999999999998874
No 348
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.42 E-value=16 Score=37.05 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=48.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506 (626)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~k 506 (626)
-+.-....+++..|...+..++..+|.+..+..-++.|+...|+.+.|...|..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 455567789999999999999999999999999999999999999988876654
No 349
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=80.24 E-value=4.5 Score=48.59 Aligned_cols=107 Identities=18% Similarity=0.148 Sum_probs=86.1
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
+..++..+..+.+.+++++|+..-.+|..+.......+.. .....|.|++...+..++...|+..+.+++.+.
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~-------~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP-------NTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH-------HHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence 5567788888999999999999999988765555444322 235678999999999999999999999998764
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908 478 --------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 478 --------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~ 511 (626)
|.-+-..-+++..+..+++++.|+.+++.|++++
T Consensus 1046 ~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1046 LLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred ccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4445566788888999999999999999999863
No 350
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=80.21 E-value=6.5 Score=39.67 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 466 A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
|+.+|.+|+.+.|.+-..|..+|..+...++.-+|+-+|-|++-..-.+ +.++.+|..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999876555 5677777776544
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.84 E-value=40 Score=39.28 Aligned_cols=116 Identities=11% Similarity=0.020 Sum_probs=86.8
Q ss_pred ChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 006908 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469 (626)
Q Consensus 390 ~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~ 469 (626)
+.+-..+...-....+..+..+.+|.+|-.+..++...+....-.- ...+.+.+-.-.|.+.+..++++.|++.
T Consensus 407 P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~------~~~l~ae~~aL~a~val~~~~~e~a~~l 480 (894)
T COG2909 407 PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR------QGDLLAEFQALRAQVALNRGDPEEAEDL 480 (894)
T ss_pred CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc------hhhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4444445556666788888888999999988888777544321100 1223344445577888889999999999
Q ss_pred HHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908 470 CNKVLDANPAH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 470 ~~~aL~~dp~~-----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~ 511 (626)
+..++..-|.+ +-++...|.+++-.|++++|+...+.+.++.
T Consensus 481 ar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 481 ARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred HHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 99999887755 5678889999999999999999999998874
No 352
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.71 E-value=12 Score=43.82 Aligned_cols=102 Identities=26% Similarity=0.374 Sum_probs=72.4
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
.+..-|+.+|..+.|+.|.-+|...- -|..+|..+..+|+|..|...+.+| +
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~vS-----------------------N~a~La~TLV~LgeyQ~AVD~aRKA-----n 1247 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVS-----------------------NFAKLASTLVYLGEYQGAVDAARKA-----N 1247 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHHHHHhhhc-----c
Confidence 45578999999999999988887533 3566899999999999999999988 4
Q ss_pred CHHHH------------HHHHHH------------------HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908 480 HVKGL------------YRRGMA------------------YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 529 (626)
Q Consensus 480 ~~ka~------------~~~g~a------------------~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~ 529 (626)
+.|.| ||+|+. |...|-|++-+..++.+|-++-.+. ..-.+|+.+..+.
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM-gmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM-GMFTELAILYSKY 1326 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH-HHHHHHHHHHHhc
Confidence 44443 444443 4557888888888888888865542 2344555554443
Q ss_pred H
Q 006908 530 Q 530 (626)
Q Consensus 530 ~ 530 (626)
+
T Consensus 1327 k 1327 (1666)
T KOG0985|consen 1327 K 1327 (1666)
T ss_pred C
Confidence 3
No 353
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.64 E-value=14 Score=39.24 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=47.6
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccC----------CCC--------ChhHHHHHhhhhhHHHHHHHHHHHH
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----------NPQ--------DDEEGKVFVGKRNLLHLNVAACLLK 459 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~----------~p~--------~~ee~~~~~~~~~~~~~Nla~~~~k 459 (626)
+..+.+.+..+..+|++..|..+.++||-.++.. +.. ...+ +.....+.........+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~e----NR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPE----NRQFFLALFRYIQSLGR 115 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcccc----chHHHHHHHHHHHHHHh
Confidence 3445555555666666666666666665433311 000 0011 11122345556777888
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 006908 460 LGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 460 l~~~~~A~~~~~~aL~~dp~ 479 (626)
.|.|.-|++.|+-.+.+||.
T Consensus 116 RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997
No 354
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=79.42 E-value=8.3 Score=30.68 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (626)
Q Consensus 394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~ 430 (626)
.+..|..+..+|..+=+.|+|++|+.+|..|+..|..
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3556777888888888899999999999999987654
No 355
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.97 E-value=22 Score=39.36 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=77.7
Q ss_pred Hhhhchhhc---cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH----
Q 006908 402 RVTGNRLFK---EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL---- 474 (626)
Q Consensus 402 k~~Gn~~f~---~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL---- 474 (626)
.+.|+.+|+ ...|++|...|.-|....+ |.+--..-+..+..+..++.+|..+..+|+...|.....++|
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d---~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d 315 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHD---PNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD 315 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcC---CcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 567777774 4568999999988877322 221111111123345567789999999999888777777666
Q ss_pred ---Hh--------------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 475 ---DA--------------NPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 475 ---~~--------------dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
.- .|.| ..|+||.-+.+...|-+.-|.++++-.+.++|.
T Consensus 316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence 11 1222 578899999999999999999999999999998
No 356
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=78.91 E-value=22 Score=37.45 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=68.8
Q ss_pred HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006908 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 481 (626)
Q Consensus 402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ 481 (626)
...+....-.|+|+.|.+.|+..+. .| |. . ..-+-.|-....++|.++.|+.+..++-+.-|.-.
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~-----dP---Et----R---llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~ 188 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLD-----DP---ET----R---LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP 188 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-----Ch---HH----H---HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc
Confidence 3455666778999999999998776 22 21 1 11111222334578999999999999999999888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 482 KGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
-|..-.-...+..|+|+.|++.++....
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 8877777788899999999998876544
No 357
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=78.47 E-value=21 Score=41.37 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=72.5
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k 482 (626)
-.|-.+++.|++++|..+. +++. ...+.++ ..+.-+-.||..++++++|...|.+++..+|+ -+
T Consensus 48 LkaLsl~r~gk~~ea~~~L-e~~~---~~~~~D~-----------~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-ee 111 (932)
T KOG2053|consen 48 LKALSLFRLGKGDEALKLL-EALY---GLKGTDD-----------LTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EE 111 (932)
T ss_pred HHHHHHHHhcCchhHHHHH-hhhc---cCCCCch-----------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HH
Confidence 4566788899999998443 3343 2334432 23445788999999999999999999999998 89
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
-++.+-.||.+-+.|.+-.+.--+..+.-|++.
T Consensus 112 ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999775555445555667653
No 358
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=78.36 E-value=6.9 Score=47.04 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=85.9
Q ss_pred HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
..+....+.|.....++.|..|.+ ..+++.++..... +++.-...+|.-+|..+.+++++.+|+..+.+|.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~-------~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMG-------VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhh-------hcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 467778888888888999998888 6667665443221 23444578999999999999999999999988764
Q ss_pred hC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 476 AN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 476 ~d--------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
+. |+...+|-+++...+.......|+..+.+|+++
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 43 456789999999999999999999999999887
No 359
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.27 E-value=30 Score=32.59 Aligned_cols=64 Identities=11% Similarity=0.186 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~---~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
...+..+|.-|.+.|++..|++.|.++...... -...+++.-++....++|..+...+.+|-.+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 357889999999999999999999999877533 2567888889999999999999999999877
No 360
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.34 E-value=3.5 Score=25.29 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACN 471 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~ 471 (626)
+++++|.++..+|++++|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 67889999999999999998765
No 361
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.84 E-value=52 Score=33.38 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=68.9
Q ss_pred HHHhhhchhhc----cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc-----C--CHHHHHH
Q 006908 400 KIRVTGNRLFK----EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----G--ECRKSIE 468 (626)
Q Consensus 400 ~~k~~Gn~~f~----~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl-----~--~~~~A~~ 468 (626)
.....|..++. ..++.+|...|++|.. ...... ..+.++++.+|..- - +...|+.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~----~g~~~a----------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~ 176 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAK----LGNVEA----------ALAMYRLGLAYLSGLQALAVAYDDKKALY 176 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHH----cCChhH----------HHHHHHHHHHHHcChhhhcccHHHHhHHH
Confidence 33445555554 4489999999999988 211110 22366677777663 1 2347888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 006908 469 ACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDK 512 (626)
Q Consensus 469 ~~~~aL~~dp~~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l~P 512 (626)
.+.++-... +..|.+++|.+|.. ..++.+|..+|.+|.+...
T Consensus 177 ~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 177 LYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 888887664 89999999988865 4589999999999999875
No 362
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.71 E-value=22 Score=32.45 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
.+..+..+.+...+..++.......--+.|+++.....-|..|+..|+|.+|+..|+...+-.+.. +-.+..+..+-.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~ 89 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHH
Confidence 344445555556677776666666666677777777777777777777777777777666655543 444555554433
No 363
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=74.65 E-value=21 Score=36.32 Aligned_cols=66 Identities=8% Similarity=-0.007 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~-lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+|..+..+..+.+..+.|...+.+|+...+.+...|...|..-+. .++.+-|...|+.+++.-|.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC
Confidence 455556666677779999999999997666778888888888666 466666999999999998876
No 364
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.41 E-value=4.3 Score=32.35 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~ 430 (626)
++.|..+..+|...=..|+|++|+.+|..|+++|..
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 356777788888888999999999999999997654
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.87 E-value=28 Score=28.06 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=43.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 453 VAACLLKLGECRKSIEACNKVLDANPAHVK---GLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~k---a~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
.|.=++..++..+|+....+||+..++... ++=.+.+||+..|+|.+++++-.+=+.
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456788899999999999998877654 444467889999999998887655443
No 366
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.54 E-value=35 Score=38.56 Aligned_cols=89 Identities=12% Similarity=0.137 Sum_probs=66.9
Q ss_pred cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHH
Q 006908 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-----ECRKSIEACNKVLDANPAHVKGLY 485 (626)
Q Consensus 411 ~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-----~~~~A~~~~~~aL~~dp~~~ka~~ 485 (626)
.++.+.|+.+|..|...+... .......+.+.+|.||++-. ++..|+..+.++-.+ .++.|.|
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~----------a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~ 329 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKA----------ATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQY 329 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHH----------HhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHH
Confidence 458999999999988721100 00112235677999999853 678899999988766 6889999
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHhcC
Q 006908 486 RRGMAYMALG---EFEEAQRDFEMMMKVD 511 (626)
Q Consensus 486 ~~g~a~~~lg---~~~eA~~~~~kAl~l~ 511 (626)
++|.++..-. ++..|..+|..|....
T Consensus 330 ~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 330 LLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred HHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 9999999876 5789999999998764
No 367
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=72.30 E-value=9.7 Score=34.49 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 006908 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~ 497 (626)
.+.+|...+..|+|.-|+..++.++..+|+|..|...++.+|..++.-
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 445666667777777777777777777777777777777777666543
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.72 E-value=87 Score=35.82 Aligned_cols=106 Identities=12% Similarity=0.138 Sum_probs=79.2
Q ss_pred HHHHHHHhhhchhh-ccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 396 DEAEKIRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 396 ~~a~~~k~~Gn~~f-~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
.+|....+.|..++ ...+++.|..+.++++..... +. +.+++..+.+-++.++.+.+... |+..+++++
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~-------~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER--HR-------LTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cc-------hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 36777778888888 788999999999999986554 22 33445556666799998888877 999999999
Q ss_pred HhCCC----CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcC
Q 006908 475 DANPA----HVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 475 ~~dp~----~~ka~~~~g~a~~~--lg~~~eA~~~~~kAl~l~ 511 (626)
+.-.. .+.-.||+-++... .+++..|+..++....+.
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 87544 45556666544322 369999999999988875
No 369
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=71.37 E-value=23 Score=37.58 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=53.5
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCC
Q 006908 449 LHLNVAACLLK---LGECRKSIEACNKVLD-ANPAHVKGLYRRGMAYMAL---------GEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 449 ~~~Nla~~~~k---l~~~~~A~~~~~~aL~-~dp~~~ka~~~~g~a~~~l---------g~~~eA~~~~~kAl~l~P~~ 514 (626)
+....|.++.+ .|+.++|+..+..++. ..+.++..+..+|.+|-.+ ..+++|+.+|.++.+++|+.
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 34556777788 9999999999999654 4567889999999998653 34789999999999999864
No 370
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=71.13 E-value=11 Score=25.35 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCC
Q 006908 449 LHLNVAACLLKLGECRKSIEACN--KVLDANPAH 480 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~--~aL~~dp~~ 480 (626)
.+..+|.++...|+|++|+..++ -+..+++.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 34568999999999999999944 777787754
No 371
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=70.81 E-value=65 Score=27.79 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=49.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCC
Q 006908 453 VAACLLKLGECRKSIEACNKVLDANPAHV---KGLYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~---ka~~~~g~a~~~lg~-----------~~eA~~~~~kAl~l~P~~ 514 (626)
+|.-++..|++-+|++..+..+...+++. -.++..|..+..+.. +-.|++.|.++..+.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 57778999999999999999998887665 456667888866533 346899999999999974
No 372
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=70.46 E-value=28 Score=37.10 Aligned_cols=84 Identities=8% Similarity=0.024 Sum_probs=53.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--------CC-----H---H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 454 AACLLKLGECRKSIEACNKVLDANP--------AH-----V---K--GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~aL~~dp--------~~-----~---k--a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
|..+++++.|..|+--|..||++.. .. + . .--.+..||+.+++.+-|+....+.+.++|..-
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4555666666666666666665531 11 1 1 123478899999999999999999999999862
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006908 516 PDATAALSKLKKQRQEVESKARK 538 (626)
Q Consensus 516 ~~~~~~l~~l~~~~~~~~~~~~~ 538 (626)
.-+-..+.+.+.+.++.++.|.
T Consensus 263 -rnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 263 -RNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHH
Confidence 1222223345556665555443
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.22 E-value=7.4 Score=27.53 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 451 LNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 451 ~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
+++|.+|+.+|+++.|......++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6799999999999999999999995
No 374
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=70.13 E-value=43 Score=35.59 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=42.3
Q ss_pred HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH--cCCHHHHHHHHH
Q 006908 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--LGECRKSIEACN 471 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k--l~~~~~A~~~~~ 471 (626)
.....++..+|++++|..|...|..++.- .+.. +. .-...++.+++.||.. .=+|.+|...++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r----~l~~-~~-----~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRR----LLSA-VN-----HTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhc----ccCh-hh-----hhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 34445777899999999999999999973 2111 11 1224466667777665 446777877777
No 375
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=70.07 E-value=15 Score=40.09 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL---GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV 532 (626)
Q Consensus 460 l~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~l---g~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~ 532 (626)
...+..|+.+|.+++..-|.....|.+++.++++. |+.-.|+.++-.|++++|.. ..++..|.++...+...
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~r~ 461 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELTRY 461 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHhhH
Confidence 34567899999999999999999999999999985 55677999999999999986 44555555554444433
No 376
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=69.92 E-value=14 Score=37.08 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006908 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493 (626)
Q Consensus 417 A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~ 493 (626)
|..+|.+|+. +.|.. ...|+.+|..+...+++-.|+-+|-++|........|.-++...+.+
T Consensus 1 A~~~Y~~A~~----l~P~~-----------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIR----LLPSN-----------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH----H-TTB-----------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHH----hCCCC-----------CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7899999999 45554 45899999999999999999999999997765567888888887777
No 377
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.65 E-value=35 Score=34.05 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHH
Q 006908 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP--A----HVKGLYRR 487 (626)
Q Consensus 414 ~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp--~----~~ka~~~~ 487 (626)
-...+.++.+|+..+..... ..+...+...+|.-|+++|+|.+|+..+..+...-. . ....+.++
T Consensus 154 s~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l 224 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRL 224 (247)
T ss_pred HHHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 34567777777765543221 223445677899999999999999999999965422 1 24567778
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 006908 488 GMAYMALGEFEEAQRDFEMMM 508 (626)
Q Consensus 488 g~a~~~lg~~~eA~~~~~kAl 508 (626)
..|+..+|+.+..+...-+.+
T Consensus 225 ~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 225 LECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 889999999888777655443
No 378
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=69.41 E-value=13 Score=41.92 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEM 506 (626)
Q Consensus 478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~k 506 (626)
|.+.+-+=.+|.++...|.-++|++.|-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 66666666677777777777777766643
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.39 E-value=42 Score=32.70 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=56.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 006908 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 517 (626)
Q Consensus 455 ~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~ 517 (626)
..+++-+...+|+.....-++-+|.+.-....+-+.|+-.|+|+.|..-++-+-.++|+..+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 356778889999999999999999999888888899999999999999999999999987543
No 380
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=69.23 E-value=48 Score=36.86 Aligned_cols=69 Identities=16% Similarity=0.060 Sum_probs=57.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCCHHHHHHHH
Q 006908 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM-MMKVDKSSEPDATAAL 522 (626)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~k-Al~l~P~~~~~~~~~l 522 (626)
++..+.-++....+......++..+|.+++++.++|.+....|....|...+.. |....|+| ......+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~ 142 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDN-AEFLGHL 142 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcch-HHHHhhH
Confidence 677777788898899999999999999999999999999998887777766665 89999987 3444444
No 381
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.29 E-value=62 Score=38.42 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=71.9
Q ss_pred hhchhhccccHHHHHHHHHH------HHHhcc-cCCCCC-hhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 404 TGNRLFKEGKFELAKAKYEK------VLRDFN-HVNPQD-DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~------al~~l~-~~~p~~-~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
.|+.+...+-|++|...|.+ |+..|- .+..-+ .-+... +-....+|..+|.+++..+...+|++.|-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe-~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAE-RCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHH-hhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 45666667778888887765 444321 111100 000000 0012358999999999999999999999888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
+++.+|..--.+....|.|++-+.++..|-+.
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 78889999999999999999999999988775
No 382
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=67.25 E-value=26 Score=35.28 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=58.8
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k 482 (626)
..=+.+...+++..|...-.+.+. ++|.++.+ +.-+|.+|.+++.+.-|+.+++..++..|+..-
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~----l~P~dp~e-----------irDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLD----LNPEDPYE-----------IRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHh----hCCCChhh-----------ccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 344456688899999999999988 67776532 233899999999999999999999999999887
Q ss_pred HHHHHHHHH
Q 006908 483 GLYRRGMAY 491 (626)
Q Consensus 483 a~~~~g~a~ 491 (626)
|-.-+++..
T Consensus 251 a~~ir~~l~ 259 (269)
T COG2912 251 AEMIRAQLL 259 (269)
T ss_pred HHHHHHHHH
Confidence 766655543
No 383
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=66.82 E-value=38 Score=27.33 Aligned_cols=67 Identities=19% Similarity=0.094 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccC--CC----CChhHHHHHhhhhhHHHHHHHHHHHHc
Q 006908 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV--NP----QDDEEGKVFVGKRNLLHLNVAACLLKL 460 (626)
Q Consensus 394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~--~p----~~~ee~~~~~~~~~~~~~Nla~~~~kl 460 (626)
..+.|-...++|-.+=..|+.++|+.+|+++++.+..- .| ...++++....+....-.|+..+-.++
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667778888888888899999999999999876431 11 122445555555555555555554443
No 384
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=66.71 E-value=49 Score=29.98 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE 531 (626)
Q Consensus 479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~ 531 (626)
........+++.++..|+|.-|...+..++..+|+| ..++.....+-..+..
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n-~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDN-EEARQLKADALEQLGY 119 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999999999998 5777777766555543
No 385
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=66.69 E-value=43 Score=37.66 Aligned_cols=122 Identities=13% Similarity=0.074 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCC---CCC--hhHHHH-------------------------
Q 006908 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---PQD--DEEGKV------------------------- 441 (626)
Q Consensus 392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~---p~~--~ee~~~------------------------- 441 (626)
...-+.+..+.+-|..-.+..+++.|+.+.++|+..-..-. -++ +-+...
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 34445677888888888888999999999999886221100 000 000000
Q ss_pred ----Hhhhh---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 442 ----FVGKR---NLLHLNVAACLLKLGECRKSIEACNKVLDANP-AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 442 ----~~~~~---~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp-~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
+..++ ..+-.|-|+.+-...-|.+|.+.|++.+.+-+ .+ +..|.-.....+.--..+.|+..|++||+
T Consensus 499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 00111 12335566655555566777777777666643 12 34556666666667778999999999999
Q ss_pred cCCC
Q 006908 510 VDKS 513 (626)
Q Consensus 510 l~P~ 513 (626)
..|.
T Consensus 579 ~Cpp 582 (835)
T KOG2047|consen 579 GCPP 582 (835)
T ss_pred cCCH
Confidence 9886
No 386
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=66.50 E-value=58 Score=25.99 Aligned_cols=15 Identities=20% Similarity=0.082 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCCC
Q 006908 500 AQRDFEMMMKVDKSS 514 (626)
Q Consensus 500 A~~~~~kAl~l~P~~ 514 (626)
|++.|.+++.+.|++
T Consensus 32 aIe~L~q~~~~~pD~ 46 (75)
T cd02682 32 AIEVLSQIVKNYPDS 46 (75)
T ss_pred HHHHHHHHHHhCCCh
Confidence 344455566667775
No 387
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.00 E-value=81 Score=33.85 Aligned_cols=115 Identities=13% Similarity=0.163 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH---HHH--
Q 006908 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC---RKS-- 466 (626)
Q Consensus 392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~---~~A-- 466 (626)
...+-.+--+.+.|..+.+...|..|+.+.-.|-++|..+.+.- -......+.+-+-+-.||+.+++. ..|
T Consensus 157 ~kAlmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~kl----Le~VDNyallnLDIVWCYfrLknitcL~DAe~ 232 (568)
T KOG2561|consen 157 QKALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKL----LELVDNYALLNLDIVWCYFRLKNITCLPDAEV 232 (568)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHH----HHhhcchhhhhcchhheehhhcccccCChHHH
Confidence 33455677788899999999999999999888877665443321 011122233445567888888752 222
Q ss_pred -HHHHHHHHHh------------C-CCC-HHHH-----HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 467 -IEACNKVLDA------------N-PAH-VKGL-----YRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 467 -~~~~~~aL~~------------d-p~~-~ka~-----~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
+..|.+.+.. . +.. -+|+ ...|...++.|+-++|.++|+.|...
T Consensus 233 RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 233 RLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 2233333321 1 222 2343 34588899999999999999988653
No 388
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=64.10 E-value=1.3e+02 Score=31.20 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908 463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515 (626)
Q Consensus 463 ~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~ 515 (626)
.+..+..+++||+.+|++.+-+..+=.+..++.+-++..+-+++++..+|++.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh
Confidence 45677788899999999999988888888999999999999999999999863
No 389
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=63.90 E-value=2.1e+02 Score=32.46 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=44.7
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
+...|..|-..|+.+.|...|++|+. .+-.. .+..+.+|++-|..-++..+++.|+....+|+..
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~----V~y~~-------v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATK----VPYKT-------VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhc----CCccc-------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 44567777788888888888888887 32221 1223567777777777777777777777777644
No 390
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.81 E-value=1.1e+02 Score=30.88 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006908 414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGM 489 (626)
Q Consensus 414 ~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k----l~~~~~A~~~~~~aL~~dp~~~ka~~~~g~ 489 (626)
...|...|.+|.... ...+..++|.||.. ..++.+|...+.+|-+... ..+.|+++
T Consensus 171 ~~~A~~~~~~aa~~~-----------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~- 230 (292)
T COG0790 171 DKKALYLYRKAAELG-----------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG- 230 (292)
T ss_pred HHhHHHHHHHHHHhc-----------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-
Confidence 346777777777622 23477889988876 3489999999999988865 89999999
Q ss_pred HHHHcC---------------CHHHHHHHHHHHHhcCCCC
Q 006908 490 AYMALG---------------EFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 490 a~~~lg---------------~~~eA~~~~~kAl~l~P~~ 514 (626)
++...| +...|..++.++....+..
T Consensus 231 ~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 231 LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 666555 7888899999888876653
No 391
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=63.76 E-value=76 Score=33.71 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHH
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLDA----NPAHVKGLYRRGMAYMA---LGEFEEAQRDFEMMMKVDKSSEPDAT 519 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~----dp~~~ka~~~~g~a~~~---lg~~~eA~~~~~kAl~l~P~~~~~~~ 519 (626)
..+..|+=.+|....+|+.-+...+..-.+ -++....-+..|.|+-. .|+.++|+..+..++..+..+.++..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 345678888999999999988888776555 24456667788888888 99999999999997777655557888
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHccccCCC
Q 006908 520 AALSKLKKQRQEV--------ESKARKQFKGLFDKKP 548 (626)
Q Consensus 520 ~~l~~l~~~~~~~--------~~~~~~~~~~~~~~~~ 548 (626)
-.+.++.+.+-.. ..+.-..|.+-|.-.+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 8888877665432 2333456777776654
No 392
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.67 E-value=1.3e+02 Score=30.32 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=73.5
Q ss_pred ChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc-CCHHHHHH
Q 006908 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-GECRKSIE 468 (626)
Q Consensus 390 ~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl-~~~~~A~~ 468 (626)
.+.+.+....+.. ++...-..|+++-..+|. ++|.+ -++|.-+=.|...+ .+..+-++
T Consensus 41 ~fr~~m~YfRAI~------~~~E~S~RAl~LT~d~i~----lNpAn-----------YTVW~yRr~iL~~l~~dL~~El~ 99 (318)
T KOG0530|consen 41 DFRDVMDYFRAII------AKNEKSPRALQLTEDAIR----LNPAN-----------YTVWQYRRVILRHLMSDLNKELE 99 (318)
T ss_pred hHHHHHHHHHHHH------hccccCHHHHHHHHHHHH----hCccc-----------chHHHHHHHHHHHhHHHHHHHHH
Confidence 4555555554443 344566788998888888 67665 34444444444443 35667777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFE-EAQRDFEMMMKVDKSSEPDATAALS 523 (626)
Q Consensus 469 ~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~-eA~~~~~kAl~l~P~~~~~~~~~l~ 523 (626)
+.+.+++-+|.|...|..|-.....+|+.. .-++..+.++..|..|- .++...+
T Consensus 100 ~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNY-HaWshRq 154 (318)
T KOG0530|consen 100 YLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNY-HAWSHRQ 154 (318)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccch-hhhHHHH
Confidence 788888888888888877777777777776 67777777877776652 3444333
No 393
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.10 E-value=68 Score=30.20 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANP--AH--VKGLYRRGMAYMALGEFEEAQRDFE 505 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp--~~--~ka~~~~g~a~~~lg~~~eA~~~~~ 505 (626)
..+.+..|.+....|+-..|+.+|..+-.-.| .- --|..|-+.+++..|-|++-..-.+
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srve 156 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVE 156 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhh
Confidence 34566778888888888888888888765443 21 3466777788888888887665444
No 394
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=60.59 E-value=65 Score=28.88 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908 450 HLNVAACLLKLGECRKSIE-ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~-~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~ 511 (626)
|.++|.-++-...-.+.++ .+...+.-+..++.-++.+|.||.++|...+|-+.+++|.+-.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 4555554443333333333 2333333344678999999999999999999999999998753
No 395
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=60.15 E-value=29 Score=40.00 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=34.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908 457 LLKLGECRKSIEACNKVLDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMM 507 (626)
Q Consensus 457 ~~kl~~~~~A~~~~~~aL~~dp~~-~ka~~~~g~a~~~lg~~~eA~~~~~kA 507 (626)
|...|.|.+|.+.++.- |--+ -..||+.|.-+...++.+.|+++|+|+
T Consensus 836 yQs~g~w~eA~eiAE~~---DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 836 YQSQGMWSEAFEIAETK---DRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHhcccHHHHHHHHhhc---cceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 44566666666554432 1112 347999999999999999999999986
No 396
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=58.68 E-value=29 Score=34.41 Aligned_cols=53 Identities=26% Similarity=0.290 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhccc-CCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 006908 414 FELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVL 474 (626)
Q Consensus 414 ~~~A~~~y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~Nla~~~~k-l~~~~~A~~~~~~aL 474 (626)
-+.|...|++|+..... +.|.+ +++..+.+|.+..|+. +++..+|+..+.+|+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~--------p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTH--------PLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTS--------HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCC--------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 47899999999987765 55554 5667788899888765 889999999888874
No 397
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=57.64 E-value=33 Score=36.36 Aligned_cols=68 Identities=13% Similarity=0.042 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 447 NLLHLNVAACLLKLGECRKSIEACNKVLD--ANP--AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~--~dp--~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+.+.+-+=.||+.-+.|+.|-....++-- -+. ..+.-+|.+|.+.+-..+|..|.++|-+|+...|.+
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 34455567788888889999887777641 112 346678899999999999999999999999999974
No 398
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=57.00 E-value=1.3e+02 Score=35.28 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=67.7
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d 477 (626)
|+..--.|.....+++++.|..+-+.++..+....+. .++.+++++|.++.-.|+|.+|+.+...+.++.
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~----------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR----------SRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3444445667778899999999999999976543332 346789999999999999999999999988773
Q ss_pred ----CC--CHHHHHHHHHHHHHcC
Q 006908 478 ----PA--HVKGLYRRGMAYMALG 495 (626)
Q Consensus 478 ----p~--~~ka~~~~g~a~~~lg 495 (626)
.- ..-+.+..+..+...|
T Consensus 528 ~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 528 RQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HHcccHHHHHHHHHHHHHHHHHhh
Confidence 22 2446677788888888
No 399
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=56.96 E-value=16 Score=41.88 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
.+..|-|.+|+-|...|++.+|+..|-+|-.
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5666788888888888888888877776543
No 400
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.96 E-value=49 Score=33.80 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcc
Q 006908 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429 (626)
Q Consensus 394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~ 429 (626)
.++.|-.+..++...-+.++|++|..+|+.|+++|-
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHH
Confidence 567777888888888899999999999999999764
No 401
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=55.29 E-value=1.1e+02 Score=24.53 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=7.6
Q ss_pred HHHHHHHHHhcCCC
Q 006908 500 AQRDFEMMMKVDKS 513 (626)
Q Consensus 500 A~~~~~kAl~l~P~ 513 (626)
|+..|..+++..|+
T Consensus 32 aie~l~~~lk~e~d 45 (77)
T cd02683 32 GIDLLMQVLKGTKD 45 (77)
T ss_pred HHHHHHHHHhhCCC
Confidence 34445555556775
No 402
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.81 E-value=1e+02 Score=31.05 Aligned_cols=69 Identities=7% Similarity=0.098 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 530 (626)
Q Consensus 461 ~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~l-g~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~ 530 (626)
..-.+|++....+|.++|.|...|-.|-.++..+ .++.+-++++...++-+|.|- .++.....+-..+.
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY-QvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY-QVWHHRRVIVELLG 126 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch-hHHHHHHHHHHHhc
Confidence 3446788889999999999998876666666655 567888999999999999984 45555554444443
No 403
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.06 E-value=2.1e+02 Score=29.69 Aligned_cols=88 Identities=11% Similarity=0.050 Sum_probs=62.1
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Q 006908 444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP------AHVK--GLYRRGMAYMALGEFEEAQRDFEMMMKV--DKS 513 (626)
Q Consensus 444 ~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp------~~~k--a~~~~g~a~~~lg~~~eA~~~~~kAl~l--~P~ 513 (626)
+-.+.+...+|..|-+.++|..|.....- +.++. .+.| .+.|+|.+|...++-.+|..+.+++--+ +..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 34567889999999999999998765533 33332 1233 4678899999999999999999997443 444
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 006908 514 SEPDATAALSKLKKQRQEVE 533 (626)
Q Consensus 514 ~~~~~~~~l~~l~~~~~~~~ 533 (626)
| +.+.-+++.+..+.-.++
T Consensus 179 N-e~Lqie~kvc~ARvlD~k 197 (399)
T KOG1497|consen 179 N-EQLQIEYKVCYARVLDYK 197 (399)
T ss_pred C-HHHHHHHHHHHHHHHHHH
Confidence 4 567667776665544433
No 404
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=53.06 E-value=1e+02 Score=23.78 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=10.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 006908 489 MAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 489 ~a~~~lg~~~eA~~~~~kAl~ 509 (626)
.-+-..|+|++|+..|.+|+.
T Consensus 13 v~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 13 VEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 333344555555555554443
No 405
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.99 E-value=39 Score=33.86 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=43.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 459 KLGECRKSIEACNKVLDANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 459 kl~~~~~A~~~~~~aL~~dp~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
+..+.++|+..|.++|++.+.- .||+-.+-.+++.+++|++-+..|++.|.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4568999999999999998753 68999999999999999998888877664
No 406
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=51.90 E-value=1e+02 Score=29.68 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANP----AHVKGLYRRGMAYMALGEFEEAQ 501 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp----~~~ka~~~~g~a~~~lg~~~eA~ 501 (626)
+.+-+|.-|. ..+..+|+..+.++|++.+ -|+..+.-++.+++.+++++.|-
T Consensus 143 lq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 143 LQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4445555444 5677888888888887743 25778888888888888888774
No 407
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=51.28 E-value=1.4e+02 Score=30.43 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=71.2
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-A 476 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~-~ 476 (626)
|+.-...|-.+....+|..|..+|-.|++-+..+.-+ .+.+..+ -|+-++...+..-+--.|+-....+++ +
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d----~kAc~sL---kYmlLSkIMlN~~~evk~vl~~K~t~~~y 278 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMD----VKACVSL---KYMLLSKIMLNRREEVKAVLRNKNTLKHY 278 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhccccccch----HHHHHHH---HHHHHHHHHHhhHHHHHHHHccchhHhhh
Confidence 3334456777788889999999999999866544322 1112211 123333332222222223333334444 5
Q ss_pred CCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 477 NPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 477 dp~~~ka~~~~g~a~~~--lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
+.....|+...+.++-. +.+|..|++.|..-+..|| -++..+..+..
T Consensus 279 ~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~----~iRsHl~~LYD 327 (421)
T COG5159 279 DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS----FIRSHLQYLYD 327 (421)
T ss_pred hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH----HHHHHHHHHHH
Confidence 66677888888888754 6789999999988776553 45566655543
No 408
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.25 E-value=1.1e+02 Score=33.82 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=54.5
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~ 480 (626)
+...+..+...|+-+.|+..++.++. . .+++....++.-+|.|+.-+.+|.+|..++....... ++
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~----------~---~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dW 335 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIP----------I---RMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DW 335 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhccc----------H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hh
Confidence 33455666666776667777766554 1 1345567789999999999999999999999887665 56
Q ss_pred HHHHHHH--HHHH
Q 006908 481 VKGLYRR--GMAY 491 (626)
Q Consensus 481 ~ka~~~~--g~a~ 491 (626)
.+|+|.- |.|+
T Consensus 336 S~a~Y~Yfa~cc~ 348 (546)
T KOG3783|consen 336 SHAFYTYFAGCCL 348 (546)
T ss_pred hHHHHHHHHHHHH
Confidence 6776653 4444
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.46 E-value=53 Score=31.19 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 463 ~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
-...++...+.++..| ++..+.+++.++..+|+.++|...+.++..+-|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 4455566777777777 88999999999999999999999999999999953
No 410
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=50.45 E-value=33 Score=22.62 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=20.9
Q ss_pred HHHHHHHH--HHHHHcC-----CHHHHHHHHHHHHhcC
Q 006908 481 VKGLYRRG--MAYMALG-----EFEEAQRDFEMMMKVD 511 (626)
Q Consensus 481 ~ka~~~~g--~a~~~lg-----~~~eA~~~~~kAl~l~ 511 (626)
+.|.|++| .++..-. ++++|+.+|++|.+..
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 45778888 5444432 4788888888887653
No 411
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=48.75 E-value=59 Score=32.54 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=59.4
Q ss_pred chhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C--
Q 006908 406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA---H-- 480 (626)
Q Consensus 406 n~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~---~-- 480 (626)
..++..++.-.|+..|...+. -.|.+--....-....-.+|.....|+.-. ....|++.+..||-.... .
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~----~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~-~~~n~~e~~d~ALm~Ae~r~D~~~ 77 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILK----GSPTNLTALIFKAACLEKLYFGFSDWHSDA-TMENAKELLDKALMTAEGRGDRSK 77 (368)
T ss_pred cchhcccchHHHhhhhhhhhc----cCCcceeEEeehhhhHHHHHhhhhhhhccc-ChhhHHHHHHHHHHhhhccCCcce
Confidence 345556666677777776665 223220000000000111233333333222 345688888888755421 1
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908 481 -VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512 (626)
Q Consensus 481 -~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P 512 (626)
--+-+|++.+++.+.+|+-|..+|.+|+.+--
T Consensus 78 IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~ 110 (368)
T COG5091 78 IGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYV 110 (368)
T ss_pred eeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 23678999999999999999999999999843
No 412
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.26 E-value=2e+02 Score=29.92 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHH
Q 006908 413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGM 489 (626)
Q Consensus 413 ~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka---~~~~g~ 489 (626)
-.+..+..|++||+ .+|.+. .++..+-.+..+.-+-.....-.++++..+|++..- |...-+
T Consensus 46 ~~E~klsilerAL~----~np~~~-----------~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 46 LAERKLSILERALK----HNPDSE-----------RLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHHHH----hCCCCH-----------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 35677889999999 466552 233333444557778888899999999999988654 444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 006908 490 AYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 490 a~~~lg~~~eA~~~~~kAl~l 510 (626)
..+..-.++..+..|.++|..
T Consensus 111 ~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 111 SNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHhccCcHHHHHHHHHHHHHH
Confidence 444455677888888887765
No 413
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=48.25 E-value=98 Score=33.67 Aligned_cols=90 Identities=20% Similarity=0.163 Sum_probs=58.3
Q ss_pred chhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006908 406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLY 485 (626)
Q Consensus 406 n~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~ 485 (626)
...+..|+.-.|.+....+|+ -.|.++. ...-++..+..+|.|+.|.+...-+-.+-....++.-
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr----~~~~~p~-----------~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~ 361 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALR----NQQQDPV-----------LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLR 361 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHH----hCCCCch-----------hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHH
Confidence 344567788888888888887 3344332 2233567777788888887777666544445566666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 486 RRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 486 ~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
-+-+.+..++++++|...-...|.-
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhcc
Confidence 6666777777777777666555543
No 414
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=48.19 E-value=1.5e+02 Score=30.92 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~--dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+-+|+|.+.-+..=...++....-.+.- -..+.-.+--+|-.+..+|+-++|...|++|+.+.++.
T Consensus 331 V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 331 VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 4578999888887777777776665543 12345566778999999999999999999999998773
No 415
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.77 E-value=2.9e+02 Score=29.63 Aligned_cols=71 Identities=15% Similarity=0.061 Sum_probs=53.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 457 ~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~--~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
..++.-+++-+.....+|..+|+..-+|+.|..++.+.+. +..-++.++++|++||.|- .++....-+-..
T Consensus 85 ~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf-h~W~YRRfV~~~ 157 (421)
T KOG0529|consen 85 LEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF-HAWHYRRFVVEQ 157 (421)
T ss_pred HHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc-cchHHHHHHHHH
Confidence 3344457777888888999999999999999999987654 6788888999999999873 455444444333
No 416
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=47.57 E-value=3.2e+02 Score=28.93 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
+-|+|..|..+...+++-+|+..|+.|...
T Consensus 239 A~A~y~~A~~~~~~~~~G~aia~L~~A~~~ 268 (377)
T PF03097_consen 239 ALAHYHQALAAEEAKKYGEAIARLRRAEEA 268 (377)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 457888888888889998888888887654
No 417
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.22 E-value=38 Score=35.42 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccC
Q 006908 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431 (626)
Q Consensus 393 e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~ 431 (626)
.+-..+..+...|+.++..++|++|...|..|..++..+
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei 74 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEI 74 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 355678899999999999999999999999999955433
No 418
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=46.12 E-value=44 Score=32.13 Aligned_cols=58 Identities=14% Similarity=0.009 Sum_probs=41.6
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~ 467 (626)
++-....|.. |-+.+..+|+.+|.++|+....-.. ....++.-||..++++++++.|-
T Consensus 141 ~elq~aLAty-Y~krD~~Kt~~ll~~~L~l~~~~~~-----------~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATY-YTKRDPEKTIQLLLRALELSNPDDN-----------FNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHH-HHccCHHHHHHHHHHHHHhcCCCCC-----------CCHHHHHHHHHHHHHhcchhhhh
Confidence 4444455544 4467899999999999995443212 22447888999999999999874
No 419
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=46.08 E-value=42 Score=21.56 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhc
Q 006908 482 KGLYRRGMAYMAL----GEFEEAQRDFEMMMKV 510 (626)
Q Consensus 482 ka~~~~g~a~~~l----g~~~eA~~~~~kAl~l 510 (626)
.|.+++|..|..- .+...|+.+|++|.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4666777776542 3677777777777654
No 420
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=45.91 E-value=61 Score=20.52 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006908 466 SIEACNKVLDANPAHVKGLYRRGMAYMA 493 (626)
Q Consensus 466 A~~~~~~aL~~dp~~~ka~~~~g~a~~~ 493 (626)
.+..+..+|..+|.|.-|+..|--++..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4667888888888888888776665544
No 421
>PF15469 Sec5: Exocyst complex component Sec5
Probab=44.87 E-value=1.1e+02 Score=28.69 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.5
Q ss_pred hhhccccHHHHHHHHHHHHHhcc
Q 006908 407 RLFKEGKFELAKAKYEKVLRDFN 429 (626)
Q Consensus 407 ~~f~~g~~~~A~~~y~~al~~l~ 429 (626)
.+.++|+|+.|+..|.+|...+.
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~ 117 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFE 117 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHH
Confidence 45678999999999999998654
No 422
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=44.85 E-value=44 Score=35.99 Aligned_cols=113 Identities=22% Similarity=0.212 Sum_probs=68.5
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHHhcccC-----------C--CCChhHHHHHhh-------hhhHHHHHHHHHHHHc
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-----------N--PQDDEEGKVFVG-------KRNLLHLNVAACLLKL 460 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~-----------~--p~~~ee~~~~~~-------~~~~~~~Nla~~~~kl 460 (626)
....|...+..++|..|+..+.+||+.+..+ . +..+++.+ ... ...--++.++.|.
T Consensus 34 ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~-~~~s~~~~~~a~fg~~le~a~Cl--- 109 (471)
T KOG4459|consen 34 AYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEA-GSASFGGLYLAIFGHLLERAACL--- 109 (471)
T ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchh-cccccchhHHHHHHHHHHHHHHH---
Confidence 3466778888889999999999988754221 1 11111110 000 0111233344443
Q ss_pred CCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908 461 GECRKSIEACNKVLDANPAH----------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (626)
Q Consensus 461 ~~~~~A~~~~~~aL~~dp~~----------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l 525 (626)
.-|.+.+.-.|.. -..|-.+-.||++.|++..|++.-...+--+|++ .+++.++..-
T Consensus 110 -------~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdd-e~ik~~ldyY 176 (471)
T KOG4459|consen 110 -------RRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDD-EDIKQNLDYY 176 (471)
T ss_pred -------HHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcH-HHHHHHHHHH
Confidence 3344333333322 3577788899999999999999998888889997 5666666543
No 423
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=44.73 E-value=2e+02 Score=30.36 Aligned_cols=30 Identities=10% Similarity=0.267 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
+-|+|+.|..+...++|-+|+..|+.|+..
T Consensus 237 A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~ 266 (355)
T cd09241 237 AAAHYRMALVALEKSKYGEEVARLRVALAA 266 (355)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 446778888888788888888888888763
No 424
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=44.28 E-value=64 Score=35.27 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNK 472 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~ 472 (626)
.|-.||...+..|++.-|..++.+
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344444444455555554444444
No 425
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=44.22 E-value=1.7e+02 Score=23.61 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 463 ~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
|+.|....++||..| ..|+.++|+.+|++++..
T Consensus 5 ~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 5 YKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHH
Confidence 455555555555544 335666666666666553
No 426
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.73 E-value=1.7e+02 Score=39.83 Aligned_cols=84 Identities=13% Similarity=0.026 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHhcCCCCHH
Q 006908 445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL----GE----FEEAQRDFEMMMKVDKSSEP 516 (626)
Q Consensus 445 ~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~l----g~----~~eA~~~~~kAl~l~P~~~~ 516 (626)
..+..+.-.|.-+.+++++++|-..|..|++++-...|||+.-|.-+..+ .. -..|+.+|-+|....-+ .
T Consensus 2810 q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~--s 2887 (3550)
T KOG0889|consen 2810 QKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNS--S 2887 (3550)
T ss_pred HHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccc--h
Confidence 44567777899999999999999999999999999999999988876542 11 35688888888877644 3
Q ss_pred HHHHHHHHHHHHHH
Q 006908 517 DATAALSKLKKQRQ 530 (626)
Q Consensus 517 ~~~~~l~~l~~~~~ 530 (626)
.+++.|+++.-.+.
T Consensus 2888 kaRk~iakvLwLls 2901 (3550)
T KOG0889|consen 2888 KARKLIAKVLWLLS 2901 (3550)
T ss_pred hhHHHHHHHHHHHH
Confidence 57777777655444
No 427
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=42.95 E-value=33 Score=37.48 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=38.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 458 ~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
+++|+.+.|.+.+... ++..-|-++|.+.+..|+++-|..+|+++-.
T Consensus 329 l~lg~L~~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHCT-HHHHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 5788888887766544 5788999999999999999999999998643
No 428
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.92 E-value=2.8e+02 Score=29.73 Aligned_cols=101 Identities=21% Similarity=0.157 Sum_probs=71.2
Q ss_pred hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHH-
Q 006908 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLDANPAHVKGL- 484 (626)
Q Consensus 408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~--~~~~A~~~~~~aL~~dp~~~ka~- 484 (626)
.-++.-++.-+.+-..||. .+|+. ..+|+-+..+..+.. +|..-++.|.++|+.||.|..+|
T Consensus 85 ~ek~~~ld~eL~~~~~~L~----~npks-----------Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~ 149 (421)
T KOG0529|consen 85 LEKQALLDEELKYVESALK----VNPKS-----------YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWH 149 (421)
T ss_pred HHHHHhhHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchH
Confidence 3334455666666667777 55554 457888899888776 48999999999999999998875
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908 485 YRRGMAYMALGE---FEEAQRDFEMMMKVDKSSEPDATAALSK 524 (626)
Q Consensus 485 ~~~g~a~~~lg~---~~eA~~~~~kAl~l~P~~~~~~~~~l~~ 524 (626)
|||=.+-..... ..+-++...+++.-+++|- .++.....
T Consensus 150 YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNY-saWhyRs~ 191 (421)
T KOG0529|consen 150 YRRFVVEQAERSRNLEKEELEFTTKLINDNFSNY-SAWHYRSL 191 (421)
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHhccchhh-hHHHHHHH
Confidence 555554444444 6777888889988888874 34444433
No 429
>PF12854 PPR_1: PPR repeat
Probab=42.09 E-value=63 Score=21.08 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908 480 HVKGLYRRGMAYMALGEFEEAQRDFEM 506 (626)
Q Consensus 480 ~~ka~~~~g~a~~~lg~~~eA~~~~~k 506 (626)
|.-.|-.+-.+|.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445566666777777777777776654
No 430
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=41.83 E-value=96 Score=31.58 Aligned_cols=62 Identities=16% Similarity=0.271 Sum_probs=51.1
Q ss_pred HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
...+.+.+..+...++++.++...++-+. +.|.++ ..|..+-..|++.|+...|+..|.+.-
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~----~dp~~E-----------~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE----LDPYDE-----------PAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCccch-----------HHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44566678888889999999999998888 777764 467778888999999999999998863
No 431
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.56 E-value=2.3e+02 Score=31.38 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDA------NP-AHVKGLYRRGMAYMALGE-FEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~------dp-~~~ka~~~~g~a~~~lg~-~~eA~~~~~kAl~l~P~~ 514 (626)
-++-+|.|+..+|+...|..++..+++- ++ --+-|+|-+|..+..++. +.+|.+++.+|-+-..+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 4566899999999999999999988733 11 126799999999999999 999999999999876554
No 432
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=40.50 E-value=1.3e+02 Score=26.59 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 450 HLNVAACLLKLGECRKSIEACNKVLDANPA---------------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~---------------~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
|.++|.-.++.+++-.++-+|.+||.+-.+ ++-.-.|+|.-+...|+-+-.+++++-|-+.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence 567888889999999999999999865311 1335678899999999999999999876553
No 433
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.39 E-value=1.9e+02 Score=23.08 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=13.4
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q 006908 492 MALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 492 ~~lg~~~eA~~~~~kAl~l 510 (626)
-..|+|++|+..|..|++.
T Consensus 17 D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 17 DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred hHhhhHHHHHHHHHHHHHH
Confidence 3457777777777777765
No 434
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=40.04 E-value=1.7e+02 Score=22.88 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHHh
Q 006908 495 GEFEEAQRDFEMMMK 509 (626)
Q Consensus 495 g~~~eA~~~~~kAl~ 509 (626)
|+|++|+..|..|++
T Consensus 20 g~~~~Al~~Y~~a~e 34 (75)
T cd02656 20 GNYEEALELYKEALD 34 (75)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555544444444433
No 435
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=39.49 E-value=3e+02 Score=25.19 Aligned_cols=101 Identities=20% Similarity=0.171 Sum_probs=64.7
Q ss_pred hhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006908 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR 486 (626)
Q Consensus 407 ~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~ 486 (626)
......++..+..... |++. +.|...+ +..--+..++..++|.+|+..+..+.+-.+..+-+--.
T Consensus 19 ~aL~~~d~~D~e~lLd-ALrv---LrP~~~e-----------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL 83 (153)
T TIGR02561 19 YALRSADPYDAQAMLD-ALRV---LRPNLKE-----------LDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL 83 (153)
T ss_pred HHHhcCCHHHHHHHHH-HHHH---hCCCccc-----------cchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence 3333556666555443 3333 4555432 34446888899999999999999998888777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908 487 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525 (626)
Q Consensus 487 ~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l 525 (626)
++.|+..+|+.+-=. +-..+++.+++ +++....+.+
T Consensus 84 ~A~CL~al~Dp~Wr~-~A~~~le~~~~--~~a~~Lv~al 119 (153)
T TIGR02561 84 LALCLNAKGDAEWHV-HADEVLARDAD--ADAVALVRAL 119 (153)
T ss_pred HHHHHHhcCChHHHH-HHHHHHHhCCC--HhHHHHHHHH
Confidence 899999999975422 23345555544 3444444333
No 436
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.46 E-value=73 Score=35.64 Aligned_cols=52 Identities=19% Similarity=0.141 Sum_probs=42.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 454 a~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
=.+.+++++++.|.+.+.++ ++..-|-.+|.+.+..+++..|.++|.+|..+
T Consensus 644 Felal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 644 FELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34457889999988876666 77788889999999999999999999998655
No 437
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.05 E-value=73 Score=19.51 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 006908 496 EFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 496 ~~~eA~~~~~kAl~l~P~~ 514 (626)
+++.|...|++++...|.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~ 20 (33)
T smart00386 2 DIERARKIYERALEKFPKS 20 (33)
T ss_pred cHHHHHHHHHHHHHHCCCC
Confidence 4455555666666555543
No 438
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=38.96 E-value=1.2e+02 Score=34.00 Aligned_cols=53 Identities=11% Similarity=0.002 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCCCC
Q 006908 462 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF-------EEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 462 ~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~-------~eA~~~~~kAl~l~P~~ 514 (626)
-|--+..+++.+|..-|..-+-+.++|.++++.+.- ++|...+.--.+++|..
T Consensus 626 LfvL~KkdLneil~~YP~sq~iLrkkAr~llk~nak~~e~t~keka~a~l~~~~~i~Pk~ 685 (815)
T KOG0499|consen 626 LFVLDKKDLNEILVHYPDSQRILRKKARVLLKQNAKTAEATPKEKALALLFPPKEITPKL 685 (815)
T ss_pred eeEecHhHHHHHHHhCccHHHHHHHHHHHHHHhcccccccCcchhhhhhhCCccccCccc
Confidence 356678899999999999999999999999887653 45555555444556654
No 439
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=38.90 E-value=2.1e+02 Score=26.28 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=68.2
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHHhcccC-------C--------------CCChh----HHHHHhhhhhHHHHHHHH
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-------N--------------PQDDE----EGKVFVGKRNLLHLNVAA 455 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~-------~--------------p~~~e----e~~~~~~~~~~~~~Nla~ 455 (626)
....+......|+.+.|.....+|...+... . |-+.+ +. .............+.
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~-~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDD-YVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeec-cCChHHHHHHHHHHH
Confidence 3455666677899999999999988765422 1 10000 00 001112345677888
Q ss_pred HHHHcCCHHHHHHHHHHHH-HhC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 456 CLLKLGECRKSIEACNKVL-DAN------P-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 456 ~~~kl~~~~~A~~~~~~aL-~~d------p-~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
-+++.|+...|.+....+- +++ | ........++..+...|+|.+|...|..|+.
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999999988776651 111 2 1245667789999999999999999998874
No 440
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=38.70 E-value=4.9e+02 Score=27.36 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
+-|+|+.|.++...+++-+|+..|+.|+.+
T Consensus 255 a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~ 284 (346)
T cd09240 255 ALAEYHQSLVAKAQKKFGEEIARLQHALEL 284 (346)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 347788888888888999999999888763
No 441
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=38.61 E-value=43 Score=28.97 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=36.5
Q ss_pred CCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcc
Q 006908 388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429 (626)
Q Consensus 388 ~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~ 429 (626)
..++...+..|..+..+|..+++.|+.+.|--+|.+.+.++.
T Consensus 28 ~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ 69 (115)
T PF08969_consen 28 NIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVE 69 (115)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 456777899999999999999999999999999999999883
No 442
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=38.15 E-value=55 Score=35.49 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=49.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
+-..+.++++|..|...+.-.|.-.-.....+.-.+-....+|-+++|.-++++.+.++|..
T Consensus 363 ~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 363 RLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 34456789999999998888876555566666666677788899999999999999998753
No 443
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=38.12 E-value=98 Score=32.46 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
+-|+|+.|..+...+++-+|+..|+.|+..
T Consensus 251 a~a~~~~a~~~~e~~~~G~aia~L~~A~~~ 280 (345)
T cd09034 251 ALAYYYHGLKLDEANKIGEAIARLQAALEL 280 (345)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 447778888888888899999999888764
No 444
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=37.83 E-value=50 Score=20.17 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 450 HLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
|+.+-.+|.+.+++++|...+.+..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4555566666666666666666554
No 445
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=37.28 E-value=2.3e+02 Score=30.67 Aligned_cols=102 Identities=16% Similarity=0.082 Sum_probs=63.3
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH--------------HH
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC--------------RK 465 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~--------------~~ 465 (626)
.++..|..+|--++|+.|...|..+.+.+..- . .-...+.++--.|.|.+.++.. +.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-----k----aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~ 280 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND-----K----AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLEN 280 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-----h----hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHH
Confidence 45678999999999999999999988854311 1 1122244444566666666532 33
Q ss_pred HHHHHHHH----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 466 SIEACNKV----LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 466 A~~~~~~a----L~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
|...|.++ .........+.+..+.++...+.|.+|...+-++...
T Consensus 281 A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 281 AYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 33334331 1111133466777777788888888877777666654
No 446
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=37.25 E-value=2e+02 Score=22.51 Aligned_cols=13 Identities=15% Similarity=0.049 Sum_probs=6.4
Q ss_pred HHHHHHHHhcCCC
Q 006908 501 QRDFEMMMKVDKS 513 (626)
Q Consensus 501 ~~~~~kAl~l~P~ 513 (626)
++.|.++++..|+
T Consensus 35 ~e~l~~~~~~~~~ 47 (77)
T smart00745 35 IEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHhccCCC
Confidence 3344445555654
No 447
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=36.49 E-value=4.4e+02 Score=29.25 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=44.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhcCCC
Q 006908 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA--------------------LGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 459 kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~--------------------lg~~~eA~~~~~kAl~l~P~ 513 (626)
...+|.+|+.....+|+.|..+.+|.-++-.-++. -.+|-+|+.+|++.+-++-.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 35689999999999999999888887666555555 56788899999998877544
No 448
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=35.76 E-value=2.2e+02 Score=22.43 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=9.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 006908 489 MAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 489 ~a~~~lg~~~eA~~~~~kAl~ 509 (626)
.-.-..|+|++|+..|..|++
T Consensus 14 v~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 14 IEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 333344555555555444443
No 449
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=35.66 E-value=1.3e+02 Score=34.58 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHH------HHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEK------VLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 468 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~------al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~ 468 (626)
+-..+.+-..|..+-+-.+|++|+++|++ |+.+-....|.. .+++--..|.-+...|+++.|+.
T Consensus 658 lik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~e----------vv~lee~wg~hl~~~~q~daain 727 (1636)
T KOG3616|consen 658 LIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEE----------VVKLEEAWGDHLEQIGQLDAAIN 727 (1636)
T ss_pred HHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHH----------HhhHHHHHhHHHHHHHhHHHHHH
Q ss_pred HHHHHHHhC---------CCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHH
Q 006908 469 ACNKVLDAN---------PAHVKGLYR----------------RGMAYMALGEFEEAQRDFEMM 507 (626)
Q Consensus 469 ~~~~aL~~d---------p~~~ka~~~----------------~g~a~~~lg~~~eA~~~~~kA 507 (626)
+|-.|--+- ..+.||++- .+.-|..+|+|+-|.+.|-++
T Consensus 728 hfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 728 HFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
No 450
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=35.51 E-value=72 Score=25.52 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=11.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 006908 490 AYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 490 a~~~lg~~~eA~~~~~kAl~l 510 (626)
-+-..|+|++|+.+|..|++.
T Consensus 15 e~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 15 QRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHccCHHHHHHHHHHHHHH
Confidence 333456666666666655543
No 451
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.20 E-value=2.8e+02 Score=23.46 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
+..++...-..+.+...|+.. |..-+.+.+.|+..|.++.. ...++|...++.-++
T Consensus 18 l~~~~~~l~~~~~E~~~v~~E----L~~l~~d~~vy~~VG~vfv~-~~~~ea~~~Le~~~e 73 (105)
T cd00632 18 YIVQRQKVEAQLNENKKALEE----LEKLADDAEVYKLVGNVLVK-QEKEEARTELKERLE 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCCCcchHHHHhhhHHhh-ccHHHHHHHHHHHHH
Confidence 444455555555555555443 33335789999999999987 677888888776554
No 452
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=35.08 E-value=32 Score=35.86 Aligned_cols=74 Identities=12% Similarity=-0.007 Sum_probs=50.8
Q ss_pred hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 483 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka 483 (626)
.+...++.+.|..|+..-..+++ ..+ .....|+.+++.++++.++++|++....+....|++..-
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~----~~~-----------s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALR----DER-----------SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred hHHhcccccCCCcceeccccccc----cCh-----------hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 44445555666666655554444 111 235689999999999999999999999999999987654
Q ss_pred HHHHHHHHH
Q 006908 484 LYRRGMAYM 492 (626)
Q Consensus 484 ~~~~g~a~~ 492 (626)
.-.+..+-.
T Consensus 346 ~~~~~~~~~ 354 (372)
T KOG0546|consen 346 EEELENVRQ 354 (372)
T ss_pred HHHHHHhhh
Confidence 444443333
No 453
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=34.86 E-value=2.2e+02 Score=24.27 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006908 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 495 (626)
Q Consensus 451 ~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg 495 (626)
...|...+-.|+|..|.+...++-+..+...-+|.--++|-..+|
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 334444455555555555555554444333444444444444443
No 454
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.55 E-value=5.2e+02 Score=26.46 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=43.2
Q ss_pred HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908 402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472 (626)
Q Consensus 402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~ 472 (626)
.+.||.+.+.+++++|+..|.+.|..-. ..+ +...+..-....+++..|...|+|..-.+....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~---s~d----ek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~ 70 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGV---SKD----EKTLNEQEATVLELFKLYVSKGDYCSLGDTITS 70 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCC---Chh----hhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHh
Confidence 3678889999999999999999887211 111 111222345678899999999987665444433
No 455
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=33.69 E-value=1e+02 Score=19.25 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
.|..+-.++.+.|+++.|...+....+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456667777778888887777766543
No 456
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=33.16 E-value=5.5e+02 Score=26.81 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMM 507 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~--~ka~~~~g~a~~~lg~~~eA~~~~~kA 507 (626)
+--.+|+|..|+|+..+|++.+....+-.|-. ...+-++-.++..+.-|.+..+.+-+.
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33568999999999999999998887666621 233445556666665555444444443
No 457
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=33.14 E-value=54 Score=31.23 Aligned_cols=40 Identities=30% Similarity=0.515 Sum_probs=27.7
Q ss_pred EEEEEEEEEecCCCcEEEeeccCC---CCCCEEEEcCCCcchhhHHHHh
Q 006908 292 LCVHYKGMLLNEEKKVFYDTRVDN---DGQPLEFSSGEGLVPEGFEMCV 337 (626)
Q Consensus 292 V~v~y~~~~~~~~g~~~~dt~~~~---~~~p~~f~lG~~~v~~gle~~l 337 (626)
+.+.+.| +|++|..|+.|+... +|+.++| |+|++|++...
T Consensus 135 lSMAn~G--pDtNGsQFfItT~~t~wLDGkhVVF----GqVl~Gmdvv~ 177 (217)
T KOG0880|consen 135 LSMANAG--PDTNGSQFFITTVKTPWLDGKHVVF----GQVLEGMDVVR 177 (217)
T ss_pred EeeeccC--CCCCCceEEEEecCCccccCceeEE----eeehhhHHHHH
Confidence 4455554 467899999987653 4666666 67889888544
No 458
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.81 E-value=4.4e+02 Score=25.03 Aligned_cols=97 Identities=22% Similarity=0.256 Sum_probs=65.5
Q ss_pred HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Q 006908 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--P 478 (626)
Q Consensus 401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d--p 478 (626)
....|..+..+|+-..|+..|..+-..- ..|.- .+-.+.+.-|..+.-.|-|+....-.+. |.-+ |
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt--~~P~~---------~rd~ARlraa~lLvD~gsy~dV~srvep-La~d~n~ 164 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADT--SIPQI---------GRDLARLRAAYLLVDNGSYDDVSSRVEP-LAGDGNP 164 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccC--CCcch---------hhHHHHHHHHHHHhccccHHHHHHHhhh-ccCCCCh
Confidence 3456677778899999999999877621 11211 1223555566677778888886554433 3333 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
-..-|.--+|.+..+.|+|..|+.+|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3344555678899999999999999998876
No 459
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.79 E-value=1.3e+02 Score=30.28 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=62.3
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 482 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k 482 (626)
..|+.+|..+.|.+--....+.-.. +...+.++....-.-...+|.---+.|-.+++-.+-...|.++|.+...-+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~S---Cq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQS---CQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHH---hccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3677888888776654444433322 2222222211111111223443445666777777888889999988643322
Q ss_pred ----HHHHH--HHHHHHcCCHHHHHHHHHHHHhc
Q 006908 483 ----GLYRR--GMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 483 ----a~~~~--g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
...|- |..|+.-|+|++|..+|-.|.+-
T Consensus 227 PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 227 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 22222 56788899999999999999875
No 460
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=32.71 E-value=1.4e+02 Score=29.85 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhccc-CCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 006908 414 FELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVL 474 (626)
Q Consensus 414 ~~~A~~~y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~Nla~~~~k-l~~~~~A~~~~~~aL 474 (626)
-+.|...|+.|+..... +.|.+ +++..+.+|.+..|+. +++..+|+..+.+|+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~--------PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTH--------PIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCC--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46889999999987543 55554 4566778888888776 588888888777763
No 461
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=32.40 E-value=4.2e+02 Score=28.07 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 482 KGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
-|+|+.|..+...++|-+|++.|+.|+.
T Consensus 253 ~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~ 280 (361)
T cd09239 253 IAHLHMGKQSEEQQKMGERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3667777777777888888888887765
No 462
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.57 E-value=76 Score=33.27 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006908 450 HLNVAACLLKLGECRKSIEACNKVLDANP--------AHVKGLYRRGMAYMALGEFEEAQRDF 504 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp--------~~~ka~~~~g~a~~~lg~~~eA~~~~ 504 (626)
++-.|.-++.+++|..|...+..|..+.. .+..++|..|.+++.+++++.++-.+
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34467777889999999999999987642 46789999999999999998877443
No 463
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=31.56 E-value=5.5e+02 Score=26.47 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=62.8
Q ss_pred HHHHhhhchhhccc-cHHHHHHHHHHHHHhccc-CCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908 399 EKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476 (626)
Q Consensus 399 ~~~k~~Gn~~f~~g-~~~~A~~~y~~al~~l~~-~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~ 476 (626)
..++..+..+..+. .+..+.++.+-+++.--. +.|.+.+-.-.+..........+-. .+..++|.+.++.+++.+..
T Consensus 50 ~~~~~lA~~l~eq~~~~~~~yrL~R~a~W~~I~~lP~~~~~g~T~L~~p~ad~~~~~~~-~~~~~~~~~Ll~~~E~sl~~ 128 (301)
T TIGR03362 50 DTLLQVADLLLEQDPDDPRGYRLRRTALWGTITALPMSNADGRTRLAPPPADRVADYQE-LLAQADWAALLQRVEQSLSL 128 (301)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCCHHHHHHHHH-HHhCCCHHHHHHHHHHHHHh
Confidence 34444555555544 467888888888874222 2222211000011111111111111 12567899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFE 505 (626)
Q Consensus 477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~ 505 (626)
.|-+...+|..++++.++| ++++...+.
T Consensus 129 ~pfWLDgq~~~~qal~~lG-~~~~a~aI~ 156 (301)
T TIGR03362 129 APFWLDGQRLSAQALERLG-YAAVAQAIR 156 (301)
T ss_pred CchhhHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 9999999999999999999 555554444
No 464
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=31.17 E-value=1.9e+02 Score=26.63 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=49.4
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccC---CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV---NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~---~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~ 471 (626)
..........+|.+++.|+...|.+..+-+-.-+... .|-. ......+.|..++..|+|.+|...+.
T Consensus 72 ~~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~----------~~~~av~~A~~ll~~~k~~eA~~aL~ 141 (155)
T PF10938_consen 72 TPEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLA----------QTPAAVKQAAALLDEGKYYEANAALK 141 (155)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHH----------HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHH----------hhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3456677889999999999999999887764422211 1110 12345789999999999999999998
Q ss_pred HHHH
Q 006908 472 KVLD 475 (626)
Q Consensus 472 ~aL~ 475 (626)
.|+.
T Consensus 142 ~A~~ 145 (155)
T PF10938_consen 142 QALD 145 (155)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8873
No 465
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=30.85 E-value=1.7e+02 Score=29.89 Aligned_cols=47 Identities=23% Similarity=0.205 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 528 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~ 528 (626)
.+.+...+.+|...|.+.+|+...++++.++|=+. ...+.|..+...
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e-~~nk~lm~~la~ 325 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE-QDNKGLMASLAT 325 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh-HHHHHHHHHHHH
Confidence 45566778899999999999999999999999763 455555544433
No 466
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.74 E-value=1.9e+02 Score=27.50 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006908 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491 (626)
Q Consensus 452 Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~ 491 (626)
....++++.|.|++|.+.+.+... +|++.+--..+...-
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence 345667788888888888888877 777766533333333
No 467
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=30.65 E-value=2.1e+02 Score=30.30 Aligned_cols=28 Identities=21% Similarity=0.187 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 482 KGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
-|||+.|..+...+++-+|+..|+.|..
T Consensus 249 ~A~y~~a~~l~e~~k~GeaIa~L~~A~~ 276 (353)
T cd09243 249 YAYCYHGETLLAKDKCGEAIRSLQESEK 276 (353)
T ss_pred HHHHHHHHHhHhcchHHHHHHHHHHHHH
Confidence 3455555555555555556655555543
No 468
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.21 E-value=1.8e+02 Score=38.05 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred hhchhhccccHHHHHHHHHH----HHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 404 TGNRLFKEGKFELAKAKYEK----VLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~----al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
.|..-|+.+.|.+|+.++++ -.. .......+.++=.+|..+++++...-..... .
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~----------------~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-----~ 1447 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKE----------------KETEEALYFLLQNLYGSIHDPDGVEGVSARR-----F 1447 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccch----------------hHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-----h
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526 (626)
Q Consensus 480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~ 526 (626)
.-..++..-..+...|+|..|.++|++++..+|++.+.-...+....
T Consensus 1448 a~~sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml 1494 (2382)
T KOG0890|consen 1448 ADPSLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSML 1494 (2382)
T ss_pred cCccHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhh
No 469
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=29.69 E-value=3.9e+02 Score=32.28 Aligned_cols=64 Identities=19% Similarity=0.127 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVK-------GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k-------a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
=|+.-|.+|.++++|.+-++++.-||+.-|+++. .-||+-.+++.. -..|+...--|+.+-|..
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCccc
Confidence 3788999999999999999999999999988864 334554444432 334666677778888864
No 470
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=29.54 E-value=1.1e+02 Score=18.88 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908 450 HLNVAACLLKLGECRKSIEACNKVL 474 (626)
Q Consensus 450 ~~Nla~~~~kl~~~~~A~~~~~~aL 474 (626)
|+.+-.+|.+.+++++|...+.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555666666666666666554
No 471
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=29.28 E-value=5.7e+02 Score=25.24 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=60.6
Q ss_pred hchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-H
Q 006908 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK-G 483 (626)
Q Consensus 405 Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k-a 483 (626)
..++.+.+...+|+..-+.-++ .+|.+. .+..-+=..+.-.|+|.+|...|+-+-++.|+..+ +
T Consensus 8 ~seLL~~~sL~dai~~a~~qVk----akPtda-----------~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a 72 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVK----AKPTDA-----------GGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGA 72 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHh----cCCccc-----------cchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHH
Confidence 3466777888999998888777 566552 23333334455689999999999999999997643 2
Q ss_pred -HHHHHH-H--HHH-----------cC-CHHHHHHHHHHHHhcCCC
Q 006908 484 -LYRRGM-A--YMA-----------LG-EFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 484 -~~~~g~-a--~~~-----------lg-~~~eA~~~~~kAl~l~P~ 513 (626)
+|+-.. | ... +| ...+=+..+..|+.++.+
T Consensus 73 ~lyr~lir~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 73 SLYRHLIRCEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccC
Confidence 333221 1 111 22 455556666777776654
No 472
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.77 E-value=4.2e+02 Score=27.39 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 463 ~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
..+||....+|+..|. ++-| . -.+.-|..|+++|..+|+-.-++
T Consensus 7 l~kaI~lv~kA~~eD~--a~nY-~-----eA~~lY~~aleYF~~~lKYE~~~ 50 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDN--AKNY-E-----EALRLYQNALEYFLHALKYEANN 50 (439)
T ss_pred HHHHHHHHHHHhhhcc--hhch-H-----HHHHHHHHHHHHHHHHHHhhhcC
Confidence 3567888888876653 1111 1 11122456777777777776544
No 473
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.55 E-value=1.9e+02 Score=30.86 Aligned_cols=27 Identities=11% Similarity=0.281 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
+..|+|.||-.+++|..|+.+|+++|.
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~ 50 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKGLN 50 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHHHH
Confidence 445666666666666666666666654
No 474
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=27.46 E-value=3.2e+02 Score=21.72 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=11.0
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 006908 493 ALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 493 ~lg~~~eA~~~~~kAl~l 510 (626)
..|+|++|+..|..++..
T Consensus 18 ~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 18 EEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 336666666666666554
No 475
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=27.10 E-value=3.2e+02 Score=21.65 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=8.9
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 006908 492 MALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 492 ~~lg~~~eA~~~~~kAl~ 509 (626)
-..|+|++|+..|..|++
T Consensus 17 D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 17 DQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 334555555555554444
No 476
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=26.76 E-value=2.4e+02 Score=29.78 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506 (626)
Q Consensus 461 ~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~k 506 (626)
...-+|+..++.++..+|.|....+.+.+.|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3467788889999999999999999999999999999999998854
No 477
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=26.43 E-value=3.8e+02 Score=28.23 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
+.|+|+.|..+...+++-+|+.+|+.|...
T Consensus 253 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~ 282 (346)
T cd09247 253 ARSQLYLARRLKEAGHIGVAVGVLREALRN 282 (346)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 457788888888889999999999998773
No 478
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=26.34 E-value=4e+02 Score=29.43 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH---HHHHH
Q 006908 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVLDANPAHVK---GLYRR 487 (626)
Q Consensus 412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~-~~~A~~~~~~aL~~dp~~~k---a~~~~ 487 (626)
+.|.+-...|.++|. .+|.+++ +|.--|.-.+..+. .+.|.+.+.++|+.+|++++ .|||+
T Consensus 119 ~~~~~v~ki~~~~l~----~Hp~~~d-----------LWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLA----KHPNNPD-----------LWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred cchhHHHHHHHHHHH----hCCCCch-----------hHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 337777778888888 6777754 44444444444443 89999999999999999975 56665
Q ss_pred HHHHH
Q 006908 488 GMAYM 492 (626)
Q Consensus 488 g~a~~ 492 (626)
-..+.
T Consensus 184 EL~~~ 188 (568)
T KOG2396|consen 184 ELMYA 188 (568)
T ss_pred HHHHH
Confidence 54443
No 479
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=25.88 E-value=4.7e+02 Score=32.69 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 430 (626)
Q Consensus 395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~ 430 (626)
-..++..|..|+.+...|+|..|+..|..|+..+..
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~ 274 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS 274 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 346788899999999999999999999999986543
No 480
>PRK10869 recombination and repair protein; Provisional
Probab=25.54 E-value=7.6e+02 Score=27.87 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcccCCCCChhHHHH-----HhhhhhHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhCCCCHH
Q 006908 417 AKAKYEKVLRDFNHVNPQDDEEGKV-----FVGKRNLLHLNVAACLLKLGE---------CRKSIEACNKVLDANPAHVK 482 (626)
Q Consensus 417 A~~~y~~al~~l~~~~p~~~ee~~~-----~~~~~~~~~~Nla~~~~kl~~---------~~~A~~~~~~aL~~dp~~~k 482 (626)
-+..++--++-+...+|...|+.+. .......++..++.++..+.. ...|+.....+-.+||....
T Consensus 186 ~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~ 265 (553)
T PRK10869 186 RKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSG 265 (553)
T ss_pred HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHH
Confidence 3344444455555555544332221 111122344445555444422 23445555555566776666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908 483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513 (626)
Q Consensus 483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~ 513 (626)
..-++-.++..+.+....+..|...+..||.
T Consensus 266 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~ 296 (553)
T PRK10869 266 VLDMLEEALIQIQEASDELRHYLDRLDLDPN 296 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH
Confidence 7777777888777777777666666666664
No 481
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=25.52 E-value=5.1e+02 Score=28.37 Aligned_cols=100 Identities=9% Similarity=0.007 Sum_probs=66.1
Q ss_pred HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908 400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 479 (626)
Q Consensus 400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~ 479 (626)
.+..+|-.+-+++++.+|...|.+...-... .+ .-++-.++.++-.-.+-+++.+.-.......-+..|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~----~~------f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~ 77 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKES----SP------FLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGK 77 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhc----ch------HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 4557888888999999999999998873221 11 0111224455444444555555555544455556677
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
++-..+-.|...++.+.|..|+..|..-.+
T Consensus 78 s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~ 107 (549)
T PF07079_consen 78 SAYLPLFKALVAYKQKEYRKALQALSVWKE 107 (549)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777777888888899999999988765443
No 482
>PRK11619 lytic murein transglycosylase; Provisional
Probab=25.30 E-value=4e+02 Score=30.74 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=41.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 456 ~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
..+..++|..+...+...-.-.......+|.+|+++..+|+.++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 344788998877766664222235678999999999999999999999998754
No 483
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.18 E-value=3e+02 Score=31.07 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=10.5
Q ss_pred HHHHcCCHHHHHHHHHH
Q 006908 490 AYMALGEFEEAQRDFEM 506 (626)
Q Consensus 490 a~~~lg~~~eA~~~~~k 506 (626)
|+..+|+++++++.+..
T Consensus 730 ~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 55666677666665544
No 484
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=24.79 E-value=5.7e+02 Score=26.13 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=67.8
Q ss_pred hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H
Q 006908 403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH-V 481 (626)
Q Consensus 403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~-~ 481 (626)
+.+..++-..+|..|+..++++++.+...... ++......+.+..+..-=-+|+..|++|.+++....+-.+.-.+- +
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~-ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp 118 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADA-EEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH
Confidence 34556678889999999999999976432111 111112233444444433467788999999988776654432222 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908 482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~ 514 (626)
|.+-..-..|.+.+++..+.+.-..-| .+|+|
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL-~~p~N 150 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWL-QDPSN 150 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-hCccc
Confidence 555555566778888877666544433 46766
No 485
>COG1278 CspC Cold shock proteins [Transcription]
Probab=24.47 E-value=1.7e+02 Score=22.81 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=16.9
Q ss_pred cCCCcCCCCCC-CeEEEEEEE
Q 006908 162 EGQGWETPRAP-YEVKAWISA 181 (626)
Q Consensus 162 ~G~g~~~~~~g-~~V~v~y~~ 181 (626)
+|-|+-.|..| ..|-|||+.
T Consensus 13 KGfGFI~p~~G~~DvFVH~Sa 33 (67)
T COG1278 13 KGFGFITPEDGGKDVFVHISA 33 (67)
T ss_pred CcceEcCCCCCCcCEEEEeee
Confidence 57788888888 699999987
No 486
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=24.38 E-value=1.8e+02 Score=32.67 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=44.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524 (626)
Q Consensus 460 l~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~ 524 (626)
..+|..|...|.+.- -+..-+|.--|.|+.+.++|..|+.-|++|+++-..+-+++...+..
T Consensus 569 ~ErYqlaV~mckKc~---iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin 630 (1141)
T KOG1811|consen 569 AERYQLAVEMCKKCG---IDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIIN 630 (1141)
T ss_pred HHHHHHHHHHHhhcC---CCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHH
Confidence 345666666666541 13456788889999999999999999999999975554555444433
No 487
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=24.19 E-value=1e+02 Score=31.72 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=46.3
Q ss_pred hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN-VAACLLKLGECRKSIEACNKVLDANPAHVK 482 (626)
Q Consensus 404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~N-la~~~~kl~~~~~A~~~~~~aL~~dp~~~k 482 (626)
.++-.-+.+-|.+--..|.+++. .+|.+-+ +|.- -+.-+.-.+++..|...+.++|+++|.+++
T Consensus 113 y~~Y~~k~k~y~~~~nI~~~~l~----khP~nvd-----------lWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 113 YAAYVIKKKMYGEMKNIFAECLT----KHPLNVD-----------LWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCCCCce-----------eeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 34444455567777788888888 7787733 2221 223345567899999999999999999987
Q ss_pred HHH
Q 006908 483 GLY 485 (626)
Q Consensus 483 a~~ 485 (626)
-|+
T Consensus 178 iw~ 180 (435)
T COG5191 178 IWI 180 (435)
T ss_pred HHH
Confidence 543
No 488
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=23.97 E-value=2.3e+02 Score=25.68 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=17.9
Q ss_pred CeEEEEEEEEeCCCcEEEecC
Q 006908 173 YEVKAWISAKTGDGKLILSHR 193 (626)
Q Consensus 173 ~~V~v~y~~~~~~g~~~~s~~ 193 (626)
-.+.++|+++..+|.++.+..
T Consensus 86 PRI~l~Y~L~d~~G~vi~~g~ 106 (141)
T PF11454_consen 86 PRIELSYTLTDADGKVIKQGE 106 (141)
T ss_pred CcEEEEEEEECCCCcEEEecc
Confidence 379999999889999998753
No 489
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=23.40 E-value=6.5e+02 Score=26.55 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509 (626)
Q Consensus 481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~ 509 (626)
+-|+|+.|..+...+++-+|+..|+.|..
T Consensus 247 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~ 275 (353)
T cd09246 247 AEALYRAAKDLHEKEDIGEEIARLRAASD 275 (353)
T ss_pred HHHHHHHHHHhHHhcchHHHHHHHHHHHH
Confidence 34678888888888899999999888865
No 490
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=23.07 E-value=9.4e+02 Score=26.36 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCC
Q 006908 462 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE--FEEAQRDFEMMMKVDKSS 514 (626)
Q Consensus 462 ~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~--~~eA~~~~~kAl~l~P~~ 514 (626)
+-..|+..|..||+.+|.-+.-.+..-+.|....+ -.--+..|+..+..||.-
T Consensus 327 rrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkk 381 (615)
T KOG3540|consen 327 RRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKK 381 (615)
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 45779999999999999887665555555554433 344778899999999874
No 491
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.74 E-value=4.7e+02 Score=27.45 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908 483 GLYRRGMAYMALGEFEEAQRDFEMMMKV 510 (626)
Q Consensus 483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l 510 (626)
.++.+|.-|+.+.+++.|+-.|++|+..
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 4566788889999999999999988765
No 492
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.40 E-value=3.8e+02 Score=26.52 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=13.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908 452 NVAACLLKLGECRKSIEACNKVLDANP 478 (626)
Q Consensus 452 Nla~~~~kl~~~~~A~~~~~~aL~~dp 478 (626)
.+|......++|++++.+..+++..++
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 344444555555555555555555443
No 493
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=22.38 E-value=4e+02 Score=29.54 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=48.8
Q ss_pred hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHH
Q 006908 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP----AHVKG 483 (626)
Q Consensus 408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp----~~~ka 483 (626)
+..+++|++|+++++-.-. .+.|.-+|.......+..-+..+|..++++|. ++.|+
T Consensus 583 ~~sssKWeqavRLCrfv~e--------------------qTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ 642 (737)
T KOG1524|consen 583 YLSSSKWEQAVRLCRFVQE--------------------QTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKA 642 (737)
T ss_pred HhccchHHHHHHHHHhccc--------------------hHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhc
Confidence 4456788888887754322 23455556555566666666666666666653 22333
Q ss_pred H----HHHHHHHHHcCCHHHHHHHHHH
Q 006908 484 L----YRRGMAYMALGEFEEAQRDFEM 506 (626)
Q Consensus 484 ~----~~~g~a~~~lg~~~eA~~~~~k 506 (626)
+ -++|.....+|+..+|.-.+.+
T Consensus 643 ltske~~mA~~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 643 LTSKEEQMAENSLMLGRMLEAETILLH 669 (737)
T ss_pred cCcHHHHHHHHHHHhccchhhhHHHHh
Confidence 2 4667777788888888766644
No 494
>PF13041 PPR_2: PPR repeat family
Probab=22.08 E-value=2.9e+02 Score=19.34 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908 449 LHLNVAACLLKLGECRKSIEACNKVLD 475 (626)
Q Consensus 449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~ 475 (626)
.|+-+=.+|.+.+++++|.+.+++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444555555555555555555544
No 495
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=21.96 E-value=1.5e+02 Score=33.82 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 006908 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE 499 (626)
Q Consensus 446 ~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~e 499 (626)
+..++.|+|..+..+..|.+|.++|.+.-.. -+...|++++..|++
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGE 840 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhh
Confidence 3457888999999999999999988876321 244566666666665
No 496
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=21.06 E-value=1.1e+03 Score=26.43 Aligned_cols=77 Identities=12% Similarity=0.038 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 527 (626)
Q Consensus 448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~ 527 (626)
+|+..+-..+-....+.-....|+++|++. .+-.||+-+++||... .-++-...+++..+.+-++ ...-+.|.....
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD-vv~~ReLa~~yE 143 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFND-VVIGRELADKYE 143 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh-HHHHHHHHHHHH
Confidence 355555555555566788888999999886 5788999999999988 5556666777777777664 344444444433
No 497
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=20.08 E-value=7.8e+02 Score=23.58 Aligned_cols=81 Identities=10% Similarity=0.019 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHH
Q 006908 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----G--ECRKSIEACNKVLDANPAHVKGL 484 (626)
Q Consensus 412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl-----~--~~~~A~~~~~~aL~~dp~~~ka~ 484 (626)
++...|++.|..|.. .+. ..+..+++..+..- . +..+|+++++++-.++ +..|-
T Consensus 87 ~~l~~a~r~~~~aC~----~n~-------------~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aC 147 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD----ANI-------------PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEAC 147 (248)
T ss_pred cCHHHHHHHHHHHhc----cCC-------------HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHH
Confidence 356778888877766 111 12344445444321 1 2567777777776553 44444
Q ss_pred HHHHHHHHH------------------------cCCHHHHHHHHHHHHhcC
Q 006908 485 YRRGMAYMA------------------------LGEFEEAQRDFEMMMKVD 511 (626)
Q Consensus 485 ~~~g~a~~~------------------------lg~~~eA~~~~~kAl~l~ 511 (626)
|.+.--|+. +.+.+.|.+.--+|.+++
T Consensus 148 f~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 148 FLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred HHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 444444432 355677777777777775
Done!