BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006909
(626 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 71/346 (20%)
Query: 132 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 191
KK E ++ P+S ++ VK N ++FT + H + ++KFSP
Sbjct: 8 KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 57
Query: 192 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 251
+G +LAS D +++IW DG F
Sbjct: 58 NGEWLASSSADKLIKIWGAY-----------DGKFE------------------------ 82
Query: 252 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 309
+ + GHK + D+AWS +SN L+S S DKT+++W V +CL H N
Sbjct: 83 ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 132
Query: 310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 368
YV C FNP N +SGS D VRIW V + + D +SA+ + DG +
Sbjct: 133 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 191
Query: 369 SITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427
S G C + ASG LK D ++ ++FS + + I+ + D+ L++
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLW 243
Query: 428 DGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 470
D + + G + A+F+ T GK I+S +D VY+WN
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 70/189 (37%), Gaps = 48/189 (25%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 214
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 215 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 243
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADV 349
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 303
Query: 350 RDVISAICY 358
VIS C+
Sbjct: 304 DVVISTACH 312
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 242
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 280
Query: 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 281 EDNLVYIWN--LQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 336
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 71/346 (20%)
Query: 132 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 191
KK E ++ P+S ++ VK N ++FT + H + ++KFSP
Sbjct: 6 KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 55
Query: 192 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 251
+G +LAS D +++IW DG F
Sbjct: 56 NGEWLASSSADKLIKIWGAY-----------DGKFE------------------------ 80
Query: 252 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 309
+ + GHK + D+AWS +SN L+S S DKT+++W V +CL H N
Sbjct: 81 ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130
Query: 310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 368
YV C FNP N +SGS D VRIW V + + D +SA+ + DG +
Sbjct: 131 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189
Query: 369 SITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427
S G C + ASG LK D ++ ++FS + + I+ + D+ L++
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLW 241
Query: 428 DGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 470
D + + G + A+F+ T GK I+S +D VY+WN
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 212
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 213 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 241
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 242
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 279 EDNLVYIWN--LQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 334
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 67/304 (22%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 62 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 350
V +CL H NYV C FNP N +SGS D VRIW G+C K +
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTL---PAHS 152
Query: 351 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409
D +SA+ + DG + S G C + ASG LK D ++ ++FS
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSP 205
Query: 410 DESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRV 466
+ + I+ + D+ L++ D + + G + A+F+ T GK I+S +D V
Sbjct: 206 N-GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 467 YVWN 470
Y+WN
Sbjct: 265 YIWN 268
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 193
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 194 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 222
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 242
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 260 EDNMVYIWN--LQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 67/304 (22%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 62 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 350
V +CL H NYV C FNP N +SGS D VRIW G+C K +
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTL---PAHS 152
Query: 351 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409
D +SA+ + DG + S G C + ASG LK D ++ ++FS
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSP 205
Query: 410 DESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRV 466
+ + I+ + D+ L++ D + + G + A+F+ T GK I+S +D V
Sbjct: 206 N-GKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 467 YVWN 470
Y+WN
Sbjct: 265 YIWN 268
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 193
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D +++W
Sbjct: 194 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNDLKLW 222
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 65 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 470 N 470
N
Sbjct: 271 N 271
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 196
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 197 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 225
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 242
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 263 EDNLVYIWN--LQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 58
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 59 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 204
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 470 N 470
N
Sbjct: 265 N 265
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 190
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 191 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 219
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 242
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 257 EDNLVYIWN--LQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 312
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 59
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 60 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 94
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 95 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 153
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 154 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 205
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 206 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 470 N 470
N
Sbjct: 266 N 266
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 191
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 192 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 220
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 246
+KFSP+G+Y+ + D +++W S K++T G + +
Sbjct: 199 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIV 254
Query: 247 VVIPDEVFQI----EESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
D + I + +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 255 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 313
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 65 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 470 N 470
N
Sbjct: 271 N 271
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 196
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 197 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 225
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 246
+KFSP+G+Y+ + D +++W S K++T G + +
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIV 259
Query: 247 VVIPDEVFQI----EESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
D + I + +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 75
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 76 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 110
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 169
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 170 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 221
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 222 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 470 N 470
N
Sbjct: 282 N 282
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 207
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 208 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 236
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 242
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 215 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 274 EDNLVYIWN--LQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 329
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 58
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 59 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 204
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 470 N 470
N
Sbjct: 265 N 265
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 190
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 191 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 219
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 246
+KFSP+G+Y+ + D +++W S K++T G + +
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIV 253
Query: 247 VVIPDEVFQI----EESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
D + I + +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 312
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 63
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 64 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 98
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 99 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 157
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 158 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 209
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 210 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 470 N 470
N
Sbjct: 270 N 270
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 195
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 196 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 224
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 246
+KFSP+G+Y+ + D +++W S K++T G + +
Sbjct: 203 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIV 258
Query: 247 VVIPDEVFQI----EESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
D + I + +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 259 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 317
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 54
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 55 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 90 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 148
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 149 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 200
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 201 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 470 N 470
N
Sbjct: 261 N 261
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 186
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 187 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 215
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 246
+KFSP+G+Y+ + D +++W S K++T G + +
Sbjct: 194 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIV 249
Query: 247 VVIPDEVFQI----EESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
D + I + +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 250 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 308
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 65 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 470 N 470
N
Sbjct: 271 N 271
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 196
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 197 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 225
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 246
+KFSP+G+Y+ + D +++W S K++T G + +
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIV 259
Query: 247 VVIPDEVFQI----EESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
D + I + +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 57
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 58 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 93 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 151
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 152 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 203
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 204 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 470 N 470
N
Sbjct: 264 N 264
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 189
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 190 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 218
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 246
+KFSP+G+Y+ + D +++W S K++T G + +
Sbjct: 197 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIV 252
Query: 247 VVIPDEVFQI----EESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
D + I + +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 253 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 62 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 470 N 470
N
Sbjct: 268 N 268
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 193
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 194 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 222
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 62 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 470 N 470
N
Sbjct: 268 N 268
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 193
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 194 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 222
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + ++KFSP+G +LA+ D +++IW DG F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY-----------DGKFE--------- 61
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 295
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 62 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 296 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 353
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 354 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 413 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 469
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 470 N 470
N
Sbjct: 268 N 268
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 193
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 294
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 194 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 222
Query: 295 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 246
+KFSP+G+Y+ + D +++W S K++T G + +
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIV 256
Query: 247 VVIPDEVFQI----EESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 298
D + I + +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 128/308 (41%), Gaps = 39/308 (12%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW-----HVTSVAASCKS-----FTDDG 224
Q + H +W + FSPDG+ +AS +D V++W H+ ++ S F+ DG
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 225 GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLL 283
++A S V + + Q+ LQ L GH V +A+S + +
Sbjct: 357 QTIASA-----------SDDKTVKLWNRNGQL----LQTLTGHSSSVRGVAFSPDGQTIA 401
Query: 284 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343
S S DKTV++W + H + V V F+P DD S S D V++W + +
Sbjct: 402 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLL 460
Query: 344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403
+ + + PDG+ S T + +G L+ + H + +
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHS------SSVR 512
Query: 404 GIQFSRDESQRIMITSEDSKLRILD-GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 462
G+ FS D Q I S+D +++ + ++ G S S +F+ G+ I S
Sbjct: 513 GVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASS 569
Query: 463 DCRVYVWN 470
D V +WN
Sbjct: 570 DKTVKLWN 577
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 132/310 (42%), Gaps = 39/310 (12%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH--------VTSVAASCK--SFTDDG 224
Q + H +W + FSPDG+ +AS +D V++W+ +T ++S + +F+ DG
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 110
Query: 225 GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLL 283
++A S V + + Q+ LQ L GH V +A+S + +
Sbjct: 111 QTIASA-----------SDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQTIA 155
Query: 284 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343
S S DKTV++W + H + V V F+P D S S D V++W + +
Sbjct: 156 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLL 214
Query: 344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403
+ + + PDG+ S T + +G L+ + H + +
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHS------SSVN 266
Query: 404 GIQFSRDESQRIMITSEDSKLRILD-GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 462
G+ F R + Q I S+D +++ + ++ G S S +F+ G+ I S D
Sbjct: 267 GVAF-RPDGQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASD 323
Query: 463 DCRVYVWNYD 472
D V +WN +
Sbjct: 324 DKTVKLWNRN 333
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 146/364 (40%), Gaps = 52/364 (14%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH--------VTSVAASCK--SFTDDG 224
Q + H +W + FSPDG+ +AS +D V++W+ +T ++S + +F+ DG
Sbjct: 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 233
Query: 225 G-------------FGSNAXXXXXXXXXXXSSHVPVVIPD-------------EVFQIEE 258
+ N S + PD +++
Sbjct: 234 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG 293
Query: 259 SPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 317
LQ L GH V +A+S + + S S DKTV++W + H + V V F+
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFS 353
Query: 318 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY 377
P D S S D V++W + + + + + PDG+ S T +
Sbjct: 354 P-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Query: 378 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD-GVDVIHKF 436
+G L+ + H + + G+ FS D+ Q I S+D +++ + ++
Sbjct: 413 NRNGQ--LLQTLTGHS------SSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQLLQTL 463
Query: 437 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD-ELCFPSSKQKNSVRSCEHFFSEG 495
G S S +F+ G+ I S DD V +WN + +L + +SVR F +G
Sbjct: 464 TG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA-FSPDG 520
Query: 496 VSVA 499
++A
Sbjct: 521 QTIA 524
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 124/326 (38%), Gaps = 60/326 (18%)
Query: 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXX 235
++AH + + FSPDG+ +AS +D V++W
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW--------------------------- 43
Query: 236 XXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMW 294
+ Q+ LQ L GH V +A+S + + S S DKTV++W
Sbjct: 44 ---------------NRNGQL----LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84
Query: 295 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 354
+ H + V V F+P D S S D V++W + + +
Sbjct: 85 NRNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 143
Query: 355 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414
+ + PDG+ S T + +G L+ + H + + G+ FS D Q
Sbjct: 144 GVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHS------SSVWGVAFSPD-GQT 194
Query: 415 IMITSEDSKLRILD-GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473
I S+D +++ + ++ G S S +F+ G+ I S DD V +WN +
Sbjct: 195 IASASDDKTVKLWNRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 252
Query: 474 LCFPSSKQKNSVRSCEHFFSEGVSVA 499
+ +S + F +G ++A
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIA 278
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 54/196 (27%)
Query: 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSS 243
I ++ FSPDG++LA+G ED ++RIW + +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIEN------------------------------- 154
Query: 244 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVGCNQCL 302
++ I L GH+ D+ L + + + L+S S D+TVR+W + QC
Sbjct: 155 -------RKIVMI-------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200
Query: 303 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV--------RDVIS 354
+ VT V +P D Y +GS+D VR+W +V+ D +D +
Sbjct: 201 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 260
Query: 355 AICYIPDGKGFIVGSI 370
++ + DG+ + GS+
Sbjct: 261 SVVFTRDGQSVVSGSL 276
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 19/178 (10%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+Q H+ I++L + P G L SG D VRIW + + S +DG
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 237 XXXXXSSHVPVVIPDEV--FQIE--ESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTV 291
S V + D F +E +S + GHK V + ++ + ++S S+D++V
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 292 RMWQV------------GCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
++W + C + H ++V V +D Y +SGS D V W
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFW 337
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 17/188 (9%)
Query: 310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAICYIPDGKGFIVG 368
Y+ V F+P D + +G+ D +RIW + +++V + I ++ Y P G + G
Sbjct: 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 369 SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 428
S T + DL+ + + + +T + S + + I S D +R+ D
Sbjct: 184 SGDRTVRIW-----DLRTGQCSL---TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Query: 429 GVD--VIHKFKGLPKSG-----SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 481
++ + +SG S S FT G+ ++S D V +WN S +
Sbjct: 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295
Query: 482 KNSVRSCE 489
+ +CE
Sbjct: 296 TPNSGTCE 303
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 97/435 (22%), Positives = 182/435 (41%), Gaps = 69/435 (15%)
Query: 76 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKK-----VKKLWKRIIS 130
++ + ++D++N + SNG+ ++ F+ + K ++K W +I
Sbjct: 2 VLSQRQRDELNRAIADYL-RSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60
Query: 131 MKKR--NVETCMSE-KRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTL 187
++K+ +E+ ++E K + S P K + K+ + E AL H+ + +
Sbjct: 61 LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYAL------SGHRSPVTRV 114
Query: 188 KFSPDGRYLASGGEDGVVRIWHVTS--VAASCKSFTD---DGGFGSNAXXXXXXXXXXXS 242
F P + S ED +++W + + K TD D F + S
Sbjct: 115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC-----S 169
Query: 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSMDKTVRMWQVGCNQC 301
+ + + + D FQ E ++ +HGH +V ++ N ++++S S DKT++MW+V C
Sbjct: 170 ADMTIKLWD--FQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 302 LNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYI 359
+ F H +V V+ N D S S D VR+W V K + + R V+ I +
Sbjct: 227 VKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 360 PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 419
P+ + TG+ + KK+ + SRD++ ++ S
Sbjct: 286 PESSYSSISEATGS-------------------ETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 420 EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY-DELCFPS 478
L L G D + +G+ F + GK I+S DD + VW+Y ++ C
Sbjct: 327 TGMCLMTLVGHD--NWVRGVL---------FHSGGKFILSCADDKTLRVWDYKNKRCM-- 373
Query: 479 SKQKNSVRSCEHFFS 493
++ + EHF +
Sbjct: 374 ----KTLNAHEHFVT 384
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 81/193 (41%), Gaps = 22/193 (11%)
Query: 164 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV---------- 213
K E Y + H+ + ++ + DG +AS D VR+W V +
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
Query: 214 -AASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIP---DEVFQIEESP----LQELH 265
C S+ + + S + P ++ D+ ++ + L L
Sbjct: 277 HVVECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMCLMTLV 335
Query: 266 GHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY 323
GH V + + S ++LSC+ DKT+R+W +C+ + H ++VT + F+ Y
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-Y 394
Query: 324 FISGSIDGKVRIW 336
++GS+D V++W
Sbjct: 395 VVTGSVDQTVKVW 407
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 42/268 (15%)
Query: 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS------VAASCK---- 218
T L + +Q H G +++L ++P+ ++ S +DG + +W+ + + C
Sbjct: 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVME 113
Query: 219 -SFTDDG------GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDV 271
+F +G G S ++PV + L GHKG
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVS-------------RVLTGHKGYA 160
Query: 272 LDLAW--SNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNY 323
+ L++ S D+T +W V Q +++F H V + N ++ N
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 324 FISGSIDGKVRIWG--VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA-S 380
FISGS D VR+W + + V + I+++ + PDG+ F GS GTC + +
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 381 GNDLKLEKVDFHDRKKTSGNKITGIQFS 408
G+ L++ + DR +T + FS
Sbjct: 281 GHQLQVYNRE-PDRNDNELPIVTSVAFS 307
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 116/282 (41%), Gaps = 33/282 (11%)
Query: 122 KKLWKRII-------------SMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEF 168
KK WK I S K N TC++ NS E++ K
Sbjct: 83 KKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALL 142
Query: 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFG 227
L H+ I ++K++ DG ++ S + V +W+V S + GG
Sbjct: 143 NVL------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196
Query: 228 SNAXXXXXXXXXXXSSHV----PVVIPDE-----VFQI-EESPLQELHGHKGDVLDLAWS 277
NA VIP V+QI E++P +L GH G + L ++
Sbjct: 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256
Query: 278 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
++N LLS S D T+R+W G N F H+ + V + + D+ IS S+DG VR+W
Sbjct: 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDDKVISCSMDGSVRLW 315
Query: 337 GVCEKRVVDWADVRDV-ISAICYIPDGKGFIVGSITGTCHFY 377
+ + ++ + V V I A DG+ + V + G + Y
Sbjct: 316 SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY 357
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 97/238 (40%), Gaps = 21/238 (8%)
Query: 118 IKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQE- 176
+K++ KL I+S ++ + + NS A +E Q KK + T + +
Sbjct: 39 LKEIVKL-DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP 97
Query: 177 --IQAHKG----CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 230
+ A G + L +S DG + +G E+G +R+W+ T + +F
Sbjct: 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKW 157
Query: 231 XXXXXXXXXXXSSHVPV---VIPDEV---FQIEESPLQELHG--HKGD---VLDLAWSNS 279
+V + VI V F+++E+ ++ H GD +D+ W +
Sbjct: 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217
Query: 280 NYLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
+ + + ++Q+ + HH ++ ++FN + +S S DG +RIW
Sbjct: 218 DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-NKLLLSASDDGTLRIW 274
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ ++ H + + S DG++ SG DG +R+W +T+ + + S A
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM 293
S + + + + + + E H + + ++SN ++SC DK V++
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 294 WQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 352
W + C N H Y+ V +P D + SG DG+ +W + E + + D D+
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258
Query: 353 ISAICYIPD 361
I+A+C+ P+
Sbjct: 259 INALCFSPN 267
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 264 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC------LNVFDHHNYVTCVQ 315
L GH G V +A + + +LS S DKT+ MW++ ++ + H ++V+ V
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 316 FNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 371
+ D + +SGS DG +R+W G +R V +DV+S + + D + + GS
Sbjct: 94 ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLS-VAFSSDNRQIVSGSRD 149
Query: 372 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGV 430
T + N L + K D + ++ ++FS + S I+++ D +++ +
Sbjct: 150 KTIKLW----NTLGVCKYTVQDESHS--EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203
Query: 431 DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473
+ K + +G + + + G S G D + +W+ +E
Sbjct: 204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 238
H G + T+ SPDG ASGG+DG +W + +T DGG NA
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE---GKHLYTLDGGDIINALCFSPNRY 269
Query: 239 XXXSSHVPV---------VIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMD 288
++ P +I DE+ Q E LAWS + L + D
Sbjct: 270 WLCAATGPSIKIWDLEGKIIVDELKQ--EVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327
Query: 289 KTVRMWQV 296
VR+WQV
Sbjct: 328 NLVRVWQV 335
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 186 TLKFSPDGRYLASGGEDGVVRIWHVT 211
+L +S DG+ L +G D +VR+W VT
Sbjct: 311 SLAWSADGQTLFAGYTDNLVRVWQVT 336
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 261 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI 319
++ L+GHK + L + + ++S S D T+R+W + C CL V + H V C++F
Sbjct: 289 VRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--- 344
Query: 320 DDNYFISGSIDGKVRIW 336
D+ +SG+ DGK+++W
Sbjct: 345 DNKRIVSGAYDGKIKVW 361
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 30/181 (16%)
Query: 264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN 322
L GH G VL L + + +++ S D TVR+W V + LN HH V ++FN +
Sbjct: 169 LTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NG 224
Query: 323 YFISGSIDGKVRIWGVCEKRVVDWADVRDVI----SAICYIPDGKGFIVGSI-------- 370
++ S D + +W + + +R V+ +A+ + +IV +
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDI---TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281
Query: 371 -TGTCHFYKA-SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 428
T TC F + +G+ + + + DR SG S D + R+ + LR+L+
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYRDRLVVSG--------SSDNTIRLWDIECGACLRVLE 333
Query: 429 G 429
G
Sbjct: 334 G 334
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ ++ H + + S DG++ SG DG +R+W +T+ + + S A
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM 293
S + + + + + + E H + + ++SN ++SC DK V++
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 294 WQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 352
W + C N H Y+ V +P D + SG DG+ +W + E + + D D+
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 235
Query: 353 ISAICYIPD 361
I+A+C+ P+
Sbjct: 236 INALCFSPN 244
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 264 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC------LNVFDHHNYVTCVQ 315
L GH G V +A + + +LS S DKT+ MW++ ++ + H ++V+ V
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 316 FNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 371
+ D + +SGS DG +R+W G +R V +DV+S + + D + + GS
Sbjct: 71 ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLS-VAFSSDNRQIVSGSRD 126
Query: 372 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGV 430
T + N L + K D + ++ ++FS + S I+++ D +++ +
Sbjct: 127 KTIKLW----NTLGVCKYTVQDESHS--EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
Query: 431 DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473
+ K + +G + + + G S G D + +W+ +E
Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 238
H G + T+ SPDG ASGG+DG +W + +T DGG NA
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE---GKHLYTLDGGDIINALCFSPNRY 246
Query: 239 XXXSSHVPV---------VIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMD 288
++ P +I DE+ Q E LAWS + L + D
Sbjct: 247 WLCAATGPSIKIWDLEGKIIVDELKQ--EVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 304
Query: 289 KTVRMWQV 296
VR+WQV
Sbjct: 305 NLVRVWQV 312
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 186 TLKFSPDGRYLASGGEDGVVRIWHVT 211
+L +S DG+ L +G D +VR+W VT
Sbjct: 288 SLAWSADGQTLFAGYTDNLVRVWQVT 313
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 256 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTC- 313
I + L +L GH G V L +++ L+S S D+TVR+W + C +VF+ HN V C
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 314 --VQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSI 370
V++ I Y ++GS D + +W + E V D + D + + P+ + VG +
Sbjct: 210 DIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVL 266
Query: 371 TG 372
G
Sbjct: 267 RG 268
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 70/188 (37%), Gaps = 34/188 (18%)
Query: 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW--------HVTSVAASCKSFTDDGGF- 226
++ H G +W LK++ G L SG D VR+W HV S D +
Sbjct: 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 227 -------GSNAXXXXXXXXXXXSSHVPVVIPDE--------VFQI-EESP--LQELHGHK 268
GS SS +PD VF EE+P + L GH
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESS-----VPDHGEEHDYPLVFHTPEENPYFVGVLRGHX 270
Query: 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 328
V ++ + N ++S S D T+ +W V +CL + H + IS S
Sbjct: 271 ASVRTVS-GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 329 IDGKVRIW 336
D +RIW
Sbjct: 330 XDTTIRIW 337
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 283 LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
+S S D T+R+W + + H V + D + +S + DG +R W
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQGH--TALVGLLRLSDKFLVSAAADGSIRGW 377
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 311 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+TC+QF +DNY I+G+ D +R++ K+ +
Sbjct: 125 ITCLQF---EDNYVITGADDKXIRVYDSINKKFL 155
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 266 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFNP-IDD 321
GH DVL +A+S N ++S D +R+W V C L+ H ++V+CV+F+P +D
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 322 NYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDG 362
+SG D V++W + R+V D + ++++ PDG
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDG 208
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 260 PLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 317
P + L GH V D+A SN+ N+ +S S D ++R+W + QC F H V V F+
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 318 PIDDNYFISGSIDGKVRIWGV 338
P D+ +SG D +R+W V
Sbjct: 119 P-DNRQIVSGGRDNALRVWNV 138
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 44/235 (18%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 238
H + ++ FSPD R + SGG D +R+W+V C G
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK---GECMHTLSRGAH------------ 151
Query: 239 XXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 298
D V + SP LD + ++S D V++W +
Sbjct: 152 -----------TDWVSCVRFSP----------SLD-----APVIVSGGWDNLVKVWDLAT 185
Query: 299 NQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC 357
+ + ++ H NYVT V +P D + S DG R+W + + + I+ IC
Sbjct: 186 GRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQIC 244
Query: 358 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412
+ P+ + ++ + + D+ +E H K + I +S D S
Sbjct: 245 FSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGS 298
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 211
+++ H + ++ SPDG AS +DGV R+W +T
Sbjct: 191 DLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 256 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTC- 313
I + L +L GH G V L +++ L+S S D+TVR+W + C +VF+ HN V C
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 314 --VQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSI 370
V++ I Y ++GS D + +W + E V D + D + + P+ + VG +
Sbjct: 210 DIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVL 266
Query: 371 TG 372
G
Sbjct: 267 RG 268
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 71/188 (37%), Gaps = 34/188 (18%)
Query: 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV-----TSV------AASCKSFTDDG 224
++ H G +W LK++ G L SG D VR+W + T V C +
Sbjct: 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 225 GF-----GSNAXXXXXXXXXXXSSHVPVVIPDE--------VFQI-EESP--LQELHGHK 268
GS SS +PD VF EE+P + L GH
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESS-----VPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270
Query: 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 328
V ++ + N ++S S D T+ +W V +CL + H + IS S
Sbjct: 271 ASVRTVS-GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 329 IDGKVRIW 336
+D +RIW
Sbjct: 330 MDTTIRIW 337
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 283 LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
+S SMD T+R+W + + + H V + D + +S + DG +R W
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGH--TALVGLLRLSDKFLVSAAADGSIRGW 377
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 311 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344
+TC+QF +DNY I+G+ D +R++ K+ +
Sbjct: 125 ITCLQF---EDNYVITGADDKMIRVYDSINKKFL 155
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 50/311 (16%)
Query: 140 MSEKRKPNSEKPKANKMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIW 185
MSE + E + K +++ +K C + T + T + ++ H I+
Sbjct: 1 MSELDQLRQEAEQL-KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSS 243
+ + D R L S +DG + IW S+T + + +
Sbjct: 60 AMHWGTDSRLLVSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 244 HVPVVIPDEVFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 295
+V D + I +E L GH G + + + N +++ S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 296 VGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 350
+ Q F H V + P D F+SG+ D ++W G+C + +
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHE 226
Query: 351 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410
I+AIC+ P+G F GS TC + DL+ ++ IT + FS+
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK- 280
Query: 411 ESQRIMITSED 421
S R+++ D
Sbjct: 281 -SGRLLLAGYD 290
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 11/185 (5%)
Query: 320 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC-YIPDGKGFIVGSITGTCHFYK 378
D +S S DGK+ IW V +R C Y P G G + C Y
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY- 124
Query: 379 ASGNDLKLEKVDFHDRKKTSGNK--ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 436
+LK + + ++ +G+ ++ +F D +I+ +S D+ + D
Sbjct: 125 ----NLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTT 178
Query: 437 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE-LCFPSSKQKNSVRSCEHFFSEG 495
+G MS S + +S D +W+ E +C + S + FF G
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 496 VSVAV 500
+ A
Sbjct: 239 NAFAT 243
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 53/237 (22%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + L+++PDGR+LASGG D +V +W S +GG+
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW---------- 266
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVR 292
PLQ H+G V +AW SN L + + D+ +R
Sbjct: 267 ----------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 304
Query: 293 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS--IDGKVRIWGV-CEKRVVDWADV 349
+W V CL+ D H+ V + ++P ISG ++ IW +V +
Sbjct: 305 IWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 363
Query: 350 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406
+ ++ PDG + T ++ +L+ +R+K S K + I
Sbjct: 364 TSRVLSLTMSPDGATVASAAADETLRLWRC----FELDPARRREREKASAAKSSLIH 416
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 67/185 (36%), Gaps = 12/185 (6%)
Query: 192 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 251
+G YLA G V++W V + GS + S H I
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGH----IHH 213
Query: 252 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQC----LNVF- 305
++ E + L GH +V L W+ + +L S D V +W + L F
Sbjct: 214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 273
Query: 306 DHHNYVTCVQFNPIDDNYFISG--SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK 363
H V V + P N +G + D +RIW VC + D + +I + P K
Sbjct: 274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 333
Query: 364 GFIVG 368
I G
Sbjct: 334 ELISG 338
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 160 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW 208
QN+ ++ + E++ H + +L SPDG +AS D +R+W
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 53/237 (22%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+ H + L+++PDGR+LASGG D +V +W S +GG+
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW---------- 277
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVR 292
PLQ H+G V +AW SN L + + D+ +R
Sbjct: 278 ----------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 315
Query: 293 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS--IDGKVRIWGV-CEKRVVDWADV 349
+W V CL+ D H+ V + ++P ISG ++ IW +V +
Sbjct: 316 IWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 374
Query: 350 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406
+ ++ PDG + T ++ +L+ +R+K S K + I
Sbjct: 375 TSRVLSLTMSPDGATVASAAADETLRLWRC----FELDPARRREREKASAAKSSLIH 427
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 67/185 (36%), Gaps = 12/185 (6%)
Query: 192 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 251
+G YLA G V++W V + GS + S H I
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGH----IHH 224
Query: 252 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQC----LNVF- 305
++ E + L GH +V L W+ + +L S D V +W + L F
Sbjct: 225 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 284
Query: 306 DHHNYVTCVQFNPIDDNYFISG--SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK 363
H V V + P N +G + D +RIW VC + D + +I + P K
Sbjct: 285 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 344
Query: 364 GFIVG 368
I G
Sbjct: 345 ELISG 349
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 160 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW 208
QN+ ++ + E++ H + +L SPDG +AS D +R+W
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 50/311 (16%)
Query: 140 MSEKRKPNSEKPKANKMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIW 185
MSE + E + K +++ +K C + T + T + ++ H I+
Sbjct: 1 MSELDQLRQEAEQL-KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSS 243
+ + D R L S +DG + IW S+T + + +
Sbjct: 60 AMHWGTDSRLLLSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 244 HVPVVIPDEVFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 295
+V D + I +E L GH G + + + N +++ S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 296 VGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 350
+ Q F H V + P D F+SG+ D ++W G+C + +
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHE 226
Query: 351 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410
I+AIC+ P+G F GS TC + DL+ ++ IT + FS+
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK- 280
Query: 411 ESQRIMITSED 421
S R+++ D
Sbjct: 281 -SGRLLLAGYD 290
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 155 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 200
K +++ +K C + T + T + ++ H I+ + + D R L S
Sbjct: 26 KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 85
Query: 201 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 258
+DG + IW S+T + + ++V D + I
Sbjct: 86 QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 136
Query: 259 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 310
+E L GH G + + + N +++ S D T +W + Q F H
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 196
Query: 311 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 365
V + P D F+SG+ D ++W G+C + + I+AIC+ P+G F
Sbjct: 197 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 252
Query: 366 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421
GS TC + DL+ ++ IT + FS+ S R+++ D
Sbjct: 253 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 301
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 11/185 (5%)
Query: 320 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC-YIPDGKGFIVGSITGTCHFYK 378
D +S S DGK+ IW V +R C Y P G G + C Y
Sbjct: 77 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY- 135
Query: 379 ASGNDLKLEKVDFHDRKKTSGNK--ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 436
+LK + + ++ +G+ ++ +F D +I+ +S D+ + D
Sbjct: 136 ----NLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTT 189
Query: 437 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE-LCFPSSKQKNSVRSCEHFFSEG 495
+G MS S + +S D +W+ E +C + S + FF G
Sbjct: 190 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 249
Query: 496 VSVAV 500
+ A
Sbjct: 250 NAFAT 254
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 155 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 200
K +++ +K C + T + T + ++ H I+ + + D R L S
Sbjct: 15 KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 74
Query: 201 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 258
+DG + IW S+T + + ++V D + I
Sbjct: 75 QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 259 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 310
+E L GH G + + + N +++ S D T +W + Q F H
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 311 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 365
V + P D F+SG+ D ++W G+C + + I+AIC+ P+G F
Sbjct: 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 241
Query: 366 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421
GS TC + DL+ ++ IT + FS+ S R+++ D
Sbjct: 242 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 11/185 (5%)
Query: 320 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC-YIPDGKGFIVGSITGTCHFYK 378
D +S S DGK+ IW V +R C Y P G G + C Y
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY- 124
Query: 379 ASGNDLKLEKVDFHDRKKTSGNK--ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 436
+LK + + ++ +G+ ++ +F D +I+ +S D+ + D
Sbjct: 125 ----NLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTT 178
Query: 437 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE-LCFPSSKQKNSVRSCEHFFSEG 495
+G MS S + +S D +W+ E +C + S + FF G
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 496 VSVAV 500
+ A
Sbjct: 239 NAFAT 243
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 155 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 200
K +++ +K C + T + T + ++ H I+ + + D R L S
Sbjct: 15 KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSAS 74
Query: 201 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 258
+DG + IW S+T + + ++V D + I
Sbjct: 75 QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 259 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 310
+E L GH G + + + N +++ S D T +W + Q F H
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 311 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 365
V + P D F+SG+ D ++W G+C + + I+AIC+ P+G F
Sbjct: 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 241
Query: 366 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421
GS TC + DL+ ++ IT + FS+ S R+++ D
Sbjct: 242 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 141 SEKRKPNSEKPKANKMEVKQNKKKCMEFT--ALYTSQEIQAHKGCIWTLKFSPDGRYLAS 198
S K K E+ K + +E+ Q ++ + T + ++ H + + + D R + S
Sbjct: 22 SLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVS 81
Query: 199 GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 258
+DG V +W SFT + S + +
Sbjct: 82 SSQDGKVIVW---------DSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132
Query: 259 SPL------------QELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVF 305
PL + + H + +++NS+ +L+ S D T +W V Q L F
Sbjct: 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192
Query: 306 DHHNY-VTCVQFNPIDD-NYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAICYIPDG 362
H V C+ P + N F+SG D K +W + + V + + ++++ Y P G
Sbjct: 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 252
Query: 363 KGFIVGSITGTCHFY 377
F GS TC Y
Sbjct: 253 DAFASGSDDATCRLY 267
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 16/193 (8%)
Query: 164 KCMEFTALYTSQEIQAHKGCIWTLK--FSPDGRYLASGGEDGVVRIWHVT-----SVAAS 216
K + + + T++E C W + ++P G +A GG D ++ +T ++AA
Sbjct: 87 KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK 146
Query: 217 CKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPL-QELHGHKGDVL--D 273
KS + S +S ++ +E L Q HGH DVL D
Sbjct: 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTC---ALWDVESGQLLQSFHGHGADVLCLD 203
Query: 274 LAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 331
LA S + N +S DK +W + QC+ F+ H + V V++ P D F SGS D
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA-FASGSDDA 262
Query: 332 KVRIWGVCEKRVV 344
R++ + R V
Sbjct: 263 TCRLYDLRADREV 275
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 288 DKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337
D T+ +W V +++ F H N V+ ++ +P D F SGS D +R+W
Sbjct: 305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 14/171 (8%)
Query: 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAICYIPDGKGF 365
H N V C+ + D +S S DGKV +W + + A Y P G
Sbjct: 63 HGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 121
Query: 366 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS----GNKITGIQFSRDESQRIMITSED 421
G + C Y L +K + KK S N ++ F+ + Q I+ S D
Sbjct: 122 ACGGLDNKCSVYP-----LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGD 175
Query: 422 SKLRILD--GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470
+ D ++ F G + + + TG +S G D + VW+
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIW 208
H+ + TL+ SPDG SG D +R+W
Sbjct: 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 45/136 (33%)
Query: 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 246
L+++PDGR+LASGG D +V +W S +GG+
Sbjct: 156 LRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW-------------------- 186
Query: 247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVRMWQVGCNQCL 302
PLQ H+G V +AW SN L + + D+ +R+W V CL
Sbjct: 187 ------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
Query: 303 NVFDHHNYVTCVQFNP 318
+ D H+ V + ++P
Sbjct: 235 SAVDAHSQVCSILWSP 250
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 67/185 (36%), Gaps = 12/185 (6%)
Query: 192 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 251
+G YLA G V++W V + GS + S H I
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGH----IHH 133
Query: 252 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQC----LNVF- 305
++ E + L GH +V L W+ + +L S D V +W + L F
Sbjct: 134 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 193
Query: 306 DHHNYVTCVQFNPIDDNYFISG--SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK 363
H V V + P N +G + D +RIW VC + D + +I + P K
Sbjct: 194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 253
Query: 364 GFIVG 368
I G
Sbjct: 254 ELISG 258
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 160 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW 208
QN+ ++ + E++ H + +L SPDG +AS D +R+W
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 5/191 (2%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + H + + S DG++ SG DG +R+W + + ++ + S A
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY---LLSCSMDKTV 291
S + + + + + + + + GH+ V + +S + ++S S DKTV
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 292 RMWQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 350
++W + C + H YV+ V +P D + SG DG V +W + E + + +
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602
Query: 351 DVISAICYIPD 361
VI A+C+ P+
Sbjct: 603 SVIHALCFSPN 613
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 21/220 (9%)
Query: 278 NSNYLLSCSMDKTVRMWQV-------GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 330
N++ ++S S DK++ +W++ G Q + H ++V V + D + +SGS D
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQ-RRLTGHSHFVEDVVLSS-DGQFALSGSWD 451
Query: 331 GKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 386
G++R+W GV +R V +DV+S + + D + + S T + N L
Sbjct: 452 GELRLWDLAAGVSTRRFV--GHTKDVLS-VAFSLDNRQIVSASRDRTIKLW----NTLGE 504
Query: 387 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVDVIHKFKGLPKSGSQ 445
K + + + ++ ++FS + Q ++++ D +++ + + + +G
Sbjct: 505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV 564
Query: 446 MSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 485
+ + + G S G D V +W+ E S + NSV
Sbjct: 565 STVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 186 TLKFSPDGRYLASGGEDGVVRIWHV 210
+L +S DG L SG DGV+R+W +
Sbjct: 667 SLNWSADGSTLFSGYTDGVIRVWGI 691
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 55/257 (21%)
Query: 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 317
P + L GH V DLA S N + +S S DKT+R+W + F H + V V F+
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 318 PIDDNYFISGSIDGKVRIW---GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTC 374
P D+ +S + ++++W G C+ + + D +S + Y P K +
Sbjct: 128 P-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS--ANKVQPFA 184
Query: 375 HFYKASGND--LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 432
++ + G D LK+ +F R
Sbjct: 185 PYFASVGWDGRLKVWNTNFQIR-------------------------------------- 206
Query: 433 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 492
+ FK + + +S S GK+I + G D ++ +W+ L +P + + F
Sbjct: 207 -YTFKAHESNVNHLSIS--PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAF 263
Query: 493 SEGVSVAVQWPGIGTEQ 509
+ +QW +GT+Q
Sbjct: 264 NP----KLQWVAVGTDQ 276
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 168 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF 220
F YT +AH+ + L SP+G+Y+A+GG+D + IW + ++ + F
Sbjct: 203 FQIRYT---FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF 252
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV 210
T + H+ ++++ FSPD R + S G + +++W++
Sbjct: 110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 58/172 (33%)
Query: 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 228
T L+T +Q H +++L+F DG ++ SG D +R+W V + +C
Sbjct: 270 TCLHT---LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET--GNC----------- 311
Query: 229 NAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMD 288
+ L GH+ + + N L+S + D
Sbjct: 312 --------------------------------IHTLTGHQSLTSGMELKD-NILVSGNAD 338
Query: 289 KTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
TV++W + QCL H + VTC+QFN N+ I+ S DG V++W
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLW 387
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 317
E+ L L GH V L + + +++S S+D ++R+W V C++ H +T
Sbjct: 269 ETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM-- 325
Query: 318 PIDDNYFISGSIDGKVRIWGV 338
+ DN +SG+ D V+IW +
Sbjct: 326 ELKDNILVSGNADSTVKIWDI 346
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 261 LQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQF 316
L+ L GH G V WS+ N ++S S D+T+++W +C++ ++ H + V C+
Sbjct: 152 LRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 317 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 369
+ + +SGS D +R+W + + + + V + C DG+ + G+
Sbjct: 208 H---EKRVVSGSRDATLRVWDIETGQCLH-VLMGHVAAVRCVQYDGRRVVSGA 256
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 261 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI 319
+ L+GH V + + ++S S D T+R+W + QCL+V H V CVQ+
Sbjct: 192 IHTLYGHTSTVRCMHL-HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--- 247
Query: 320 DDNYFISGSIDGKVRIW 336
D +SG+ D V++W
Sbjct: 248 DGRRVVSGAYDFMVKVW 264
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 323
L GH V+ N ++S S D T+++W +CL H V + + DN
Sbjct: 114 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--GGVWSSQMRDNI 171
Query: 324 FISGSIDGKVRIW 336
ISGS D +++W
Sbjct: 172 IISGSTDRTLKVW 184
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 281 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
Y+LS S D TV++W N L F+ H ++V CV FNP D + F SG +D V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 339 CE 340
+
Sbjct: 171 GQ 172
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 281 YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 339
Y+++ S D T+++W C+ + H + V+ F+P ISGS DG ++IW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Query: 340 EKRV 343
+V
Sbjct: 259 TYKV 262
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 281 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
Y+LS S D TV++W N L F+ H ++V CV FNP D + F SG +D V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 339 CE 340
+
Sbjct: 171 GQ 172
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 13/176 (7%)
Query: 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXX 235
+ +AH I ++ P Y+ SG +D V++W+ + A ++F F
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 236 XXXXXXSSHVPVVIPDEVFQIEESPL-------QELHGHKGDVLDLAWSNSNYLLSCSMD 288
S + + +V+ + +S QE + D L + Y+++ S D
Sbjct: 152 DPSTFASGCLDRTV--KVWSLGQSTPNFTLTTGQERGVNYVDYYPLP--DKPYMITASDD 207
Query: 289 KTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343
T+++W C+ + H + V+ F+P ISGS DG ++IW +V
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKV 262
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 281 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
Y+LS S D TV++W N L F+ H ++V CV FNP D + F SG +D V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 339 CE 340
+
Sbjct: 171 GQ 172
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 13/176 (7%)
Query: 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXX 235
+ +AH I ++ P Y+ SG +D V++W+ + A ++F F
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 236 XXXXXXSSHVPVVIPDEVFQIEESPL-------QELHGHKGDVLDLAWSNSNYLLSCSMD 288
S + + +V+ + +S QE + D L + Y+++ S D
Sbjct: 152 DPSTFASGCLDRTV--KVWSLGQSTPNFTLTTGQERGVNYVDYYPLP--DKPYMITASDD 207
Query: 289 KTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343
T+++W C+ + H + V+ F+P ISGS DG ++IW +V
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKV 262
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 281 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
Y+LS S D TV++W N L F+ H ++V CV FNP D + F SG +D V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 339 CE 340
+
Sbjct: 171 GQ 172
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 281 YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 339
Y+++ S D T+++W C+ + H + V+ F+P ISGS DG ++IW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Query: 340 EKRV 343
+V
Sbjct: 259 TYKV 262
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 46/186 (24%)
Query: 157 EVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS 216
++K K +FT + E AHK I ++ + P LA+G D V IW A
Sbjct: 35 KIKLVSVKYDDFTLIDVLDE-TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA-- 91
Query: 217 CKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW 276
D F+++ L + GH+ +V +AW
Sbjct: 92 ----------------------------------DRTFEMD--LLAIIEGHENEVKGVAW 115
Query: 277 SNSNYLL-SCSMDKTVRMWQVGCN----QCLNVFDHHNY-VTCVQFNPIDDNYFISGSID 330
SN Y L +CS DK+V +W+ + +C++V H+ V V ++P + S S D
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYD 174
Query: 331 GKVRIW 336
VRIW
Sbjct: 175 DTVRIW 180
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 185 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS--NAXXXXXXXXXXXS 242
W L ++P G LAS G D +RIW + CKS +G + +
Sbjct: 20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79
Query: 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN-- 299
S + Q + + L GH+ +V +AW+ S N L +CS DK+V +W+V
Sbjct: 80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139
Query: 300 -QCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW 336
+C++V + H V V ++P S S D V+++
Sbjct: 140 YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLY 177
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW 208
++ H+ +W+L F P G+ LAS +D VRIW
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 264 LHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQ 295
L GH+ V LA+ S L SCS D+TVR+W+
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 196 LASGGEDGVVRIWH-----VTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIP 250
+AS DG VR+W + +V + + F + + S + VP+
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 310
E PL L GH+G+V L++ + ++S S DKT ++W+ G + N+ H+
Sbjct: 92 SG-----EDPLYTLIGHQGNVCSLSFQD-GVVISGSWDKTAKVWKEG-SLVYNLQAHNAS 144
Query: 311 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGS 369
V + +N F++ S D +++W +K + ++ + DV+ + + DG
Sbjct: 145 VWDAKVVSFSENKFLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDG------- 196
Query: 370 ITGTCHFYKASGNDLKLEKVDFH 392
HF S ND ++ VD H
Sbjct: 197 -----HFISCS-NDGLIKLVDXH 213
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 26/204 (12%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 238
HK + ++F+ DG+ L S ED V+++W+ T D F
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDFR 1058
Query: 239 XXXSSHVPVVIPDEVFQ----IEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 293
S + D + I ++ H+G VL A S ++ S S DKT ++
Sbjct: 1059 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1118
Query: 294 WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 352
W L+ HN V C F+ +D +G +G++RIW V + +++ V
Sbjct: 1119 WSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1177
Query: 353 ----------ISAICYIPDGKGFI 366
++ +C+ PD K +
Sbjct: 1178 EEGTATHGGWVTDVCFSPDSKTLV 1201
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 252 EVFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN 309
+VF+ E L ++ H+ +VL A+S+ + Y+ +CS DK V++W + ++ +D H+
Sbjct: 647 QVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS 706
Query: 310 -YVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEK 341
V C F ++ + +GS D +++W + +K
Sbjct: 707 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 164 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT--SVAASCKSFT 221
K F L E++ H GC+ FS DG LA+G ++G +RIW+V+ + SC +
Sbjct: 1117 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS 1176
Query: 222 DDGGFGSNA 230
+ G ++
Sbjct: 1177 VEEGTATHG 1185
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 125/317 (39%), Gaps = 49/317 (15%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 238
H + +FSPD LAS DG +R+W V S A KS F S+
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS-ANERKSINVKRFFLSSEDPPEDVEV 806
Query: 239 -------XXXSSHVPVVIPDEV--FQIEES-PLQELH-GHKGDVLDLAWSNSNYLLSCSM 287
+ V ++V F I S L E+H GH + +S ++L ++
Sbjct: 807 IVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 866
Query: 288 DKT-VRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIW---GVCE 340
+ V +W + L V D H ++V V F+P D + F++ S D +R+W VC+
Sbjct: 867 SQYCVELWNIDSR--LKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCK 923
Query: 341 KRVVDWADVRDVI-----SAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDR 394
+ DV+ + + + + +G ++ TG ++D+
Sbjct: 924 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG---------------QIDYLPE 968
Query: 395 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 454
+ S ++ + + ED ++I++ + G+ + FT G
Sbjct: 969 AQVSCCCLS------PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1022
Query: 455 KHIISIGDDCRVYVWNY 471
K +IS +D + VWN+
Sbjct: 1023 KTLISSSEDSVIQVWNW 1039
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 32/212 (15%)
Query: 147 NSEKPKANKMEVKQ------------NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR 194
SE + K++ KQ NKK + L ++ H ++ FS DG+
Sbjct: 580 TSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLV----VRPHTDAVYHACFSQDGQ 635
Query: 195 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVF 254
+AS G D ++++ A + + D ++ S++ D+
Sbjct: 636 RIASCGADKTLQVFK----AETGEKLLD---IKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 255 QIEESPLQEL----HGHKGDVLDLAWSN-SNYLL--SCSMDKTVRMWQVGCNQCLN-VFD 306
+I +S +L H V ++N SN+LL + S D +++W + +C N +F
Sbjct: 689 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 748
Query: 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
H N V +F+P DD S S DG +R+W V
Sbjct: 749 HTNSVNHCRFSP-DDELLASCSADGTLRLWDV 779
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 282 LLSCSMDKTVRMWQVGCNQ-CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340
+ SC DKT+++++ + L++ H + V C F+ DD+Y + S D KV+IW
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSAT 695
Query: 341 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT--- 397
++V D C+ + ++ + TG+ F+ LKL ++ + + T
Sbjct: 696 GKLVHTYDEHSEQVNCCHFTNKSNHLLLA-TGSNDFF------LKLWDLNQKECRNTMFG 748
Query: 398 SGNKITGIQFSRDESQRIMITSEDSKLRILD 428
N + +FS D+ + + S D LR+ D
Sbjct: 749 HTNSVNHCRFSPDD-ELLASCSADGTLRLWD 778
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 18/173 (10%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+QAH+ + + D R L S DG V++W+V + G S A
Sbjct: 1047 LQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1105
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK-TVRMWQ 295
S+ I F + SPL EL GH G V A+S LL+ D +R+W
Sbjct: 1106 KFSSTSADKTAKIWS--FDLL-SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Query: 296 VGCNQCLN----------VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
V Q L+ H +VT V F+P D +S G ++ W V
Sbjct: 1163 VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG--GYLKWWNV 1212
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 71/203 (34%), Gaps = 41/203 (20%)
Query: 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV---AASCKSFTDDGGFGSNAXXXX 234
+ H + + FSPDG + +D +R+W V +A D F N
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 945
Query: 235 XXXXXX------------------------XSSHVPVVI---PDEVFQIEESPLQELH-- 265
S H+ V D +I E P +
Sbjct: 946 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 1005
Query: 266 --GHKGDVLDLAWS-NSNYLLSCSMDKTVRM--WQVGCNQCLNVFDHHNYVTCVQFNPID 320
GHK V + ++ + L+S S D +++ WQ G VF + T F +
Sbjct: 1006 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----YVFLQAHQETVKDFRLLQ 1061
Query: 321 DNYFISGSIDGKVRIWGVCEKRV 343
D+ +S S DG V++W V R+
Sbjct: 1062 DSRLLSWSFDGTVKVWNVITGRI 1084
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 26/204 (12%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 238
HK + ++F+ DG+ L S ED V+++W+ T D F
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDFR 1051
Query: 239 XXXSSHVPVVIPDEVFQ----IEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 293
S + D + I ++ H+G VL A S ++ S S DKT ++
Sbjct: 1052 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111
Query: 294 WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 352
W L+ HN V C F+ +D +G +G++RIW V + +++ V
Sbjct: 1112 WSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170
Query: 353 ----------ISAICYIPDGKGFI 366
++ +C+ PD K +
Sbjct: 1171 EEGTATHGGWVTDVCFSPDSKTLV 1194
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 164 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT--SVAASCKSFT 221
K F L E++ H GC+ FS DG LA+G ++G +RIW+V+ + SC +
Sbjct: 1110 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS 1169
Query: 222 DDGGFGSNA 230
+ G ++
Sbjct: 1170 VEEGTATHG 1178
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 252 EVFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN 309
+VF+ E L ++ H+ +VL A+S+ + Y+ +CS DK V++W + ++ +D H+
Sbjct: 640 QVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS 699
Query: 310 -YVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEK 341
V C F ++ + +GS D +++W + +K
Sbjct: 700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 125/317 (39%), Gaps = 49/317 (15%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 238
H + +FSPD LAS DG +R+W V S A KS F S+
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS-ANERKSINVKRFFLSSEDPPEDVEV 799
Query: 239 -------XXXSSHVPVVIPDEV--FQIEES-PLQELH-GHKGDVLDLAWSNSNYLLSCSM 287
+ V ++V F I S L E+H GH + +S ++L ++
Sbjct: 800 IVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859
Query: 288 DKT-VRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIW---GVCE 340
+ V +W + L V D H ++V V F+P D + F++ S D +R+W VC+
Sbjct: 860 SQYCVELWNIDSR--LKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCK 916
Query: 341 KRVVDWADVRDVI-----SAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDR 394
+ DV+ + + + + +G ++ TG ++D+
Sbjct: 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG---------------QIDYLPE 961
Query: 395 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 454
+ S ++ + + ED ++I++ + G+ + FT G
Sbjct: 962 AQVSCCCLS------PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1015
Query: 455 KHIISIGDDCRVYVWNY 471
K +IS +D + VWN+
Sbjct: 1016 KTLISSSEDSVIQVWNW 1032
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 32/212 (15%)
Query: 147 NSEKPKANKMEVKQ------------NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR 194
SE + K++ KQ NKK + L ++ H ++ FS DG+
Sbjct: 573 TSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLV----VRPHTDAVYHACFSQDGQ 628
Query: 195 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVF 254
+AS G D ++++ A + + D ++ S++ D+
Sbjct: 629 RIASCGADKTLQVFK----AETGEKLLD---IKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 255 QIEESPLQEL----HGHKGDVLDLAWSN-SNYLL--SCSMDKTVRMWQVGCNQCLN-VFD 306
+I +S +L H V ++N SN+LL + S D +++W + +C N +F
Sbjct: 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741
Query: 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
H N V +F+P DD S S DG +R+W V
Sbjct: 742 HTNSVNHCRFSP-DDELLASCSADGTLRLWDV 772
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 282 LLSCSMDKTVRMWQVGCNQ-CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340
+ SC DKT+++++ + L++ H + V C F+ DD+Y + S D KV+IW
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSAT 688
Query: 341 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT--- 397
++V D C+ + ++ + TG+ F+ LKL ++ + + T
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLA-TGSNDFF------LKLWDLNQKECRNTMFG 741
Query: 398 SGNKITGIQFSRDESQRIMITSEDSKLRILD 428
N + +FS D+ + + S D LR+ D
Sbjct: 742 HTNSVNHCRFSPDD-ELLASCSADGTLRLWD 771
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 18/173 (10%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+QAH+ + + D R L S DG V++W+V + G S A
Sbjct: 1040 LQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK-TVRMWQ 295
S+ I F + SPL EL GH G V A+S LL+ D +R+W
Sbjct: 1099 KFSSTSADKTAKIWS--FDLL-SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Query: 296 VGCNQCLN----------VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
V Q L+ H +VT V F+P D +S G ++ W V
Sbjct: 1156 VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG--GYLKWWNV 1205
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 71/203 (34%), Gaps = 41/203 (20%)
Query: 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV---AASCKSFTDDGGFGSNAXXXX 234
+ H + + FSPDG + +D +R+W V +A D F N
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938
Query: 235 XXXXXX------------------------XSSHVPVVI---PDEVFQIEESPLQELH-- 265
S H+ V D +I E P +
Sbjct: 939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 998
Query: 266 --GHKGDVLDLAWS-NSNYLLSCSMDKTVRM--WQVGCNQCLNVFDHHNYVTCVQFNPID 320
GHK V + ++ + L+S S D +++ WQ G VF + T F +
Sbjct: 999 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----YVFLQAHQETVKDFRLLQ 1054
Query: 321 DNYFISGSIDGKVRIWGVCEKRV 343
D+ +S S DG V++W V R+
Sbjct: 1055 DSRLLSWSFDGTVKVWNVITGRI 1077
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 164 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS--VAASCKSFT 221
K F L E++ H GC+ FS D LA+G ++G +RIW+V++ + C +
Sbjct: 1116 KIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLS 1175
Query: 222 DDGG 225
++G
Sbjct: 1176 EEGA 1179
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 252 EVFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN 309
+VF+ E L E+ H+ +VL A+S + ++ +CS+DK V++W + ++ +D H+
Sbjct: 646 QVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHS 705
Query: 310 -YVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEK 341
V C F + + +GS D +++W + +K
Sbjct: 706 EQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK 739
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 120/310 (38%), Gaps = 35/310 (11%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 238
H + +FSPD + LAS DG +++W TS A+ + + F N
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS--ANERKSINVKQFFLNLEDPQEDME 804
Query: 239 --------XXXSSHVPVVIPDEVFQIE---ESPLQELH-GHKGDVLDLAWSNSNYLLSCS 286
+ + V +++F + L E+H GH + +S N+L +
Sbjct: 805 VIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVA 864
Query: 287 MDKT-VRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW---GVCEK 341
+ + V +W ++ + H ++V V F+P D + F++ S D +R+W VC+
Sbjct: 865 LSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSP-DGSSFLTSSDDQTIRLWETKKVCKN 923
Query: 342 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401
V DV+ + + ++ H + + + ++D+ + S
Sbjct: 924 SAVMLKQEVDVV-----FQENEVMVL----AVDHIRRLQLINGRTGQIDYLTEAQVSCCC 974
Query: 402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG 461
++ Q I E+ + IL+ V+ + FT K +IS
Sbjct: 975 LS------PHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSS 1028
Query: 462 DDCRVYVWNY 471
DD + VWN+
Sbjct: 1029 DDAEIQVWNW 1038
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 79/202 (39%), Gaps = 25/202 (12%)
Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 239
HK +W ++F+ D + L S +D +++W+ D F
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQ---------LDKCIFLRGHQETVKDFRL 1058
Query: 240 XXSSHVPVVIPDEVFQ----IEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMW 294
+S + D + I + ++ H+G VL S+ + S S DKT ++W
Sbjct: 1059 LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Query: 295 QVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW------- 346
L+ HN V C F+ +D +G +G++RIW V ++
Sbjct: 1119 SFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEE 1177
Query: 347 --ADVRDVISAICYIPDGKGFI 366
A ++ +C+ PDGK I
Sbjct: 1178 GAATHGGWVTDLCFSPDGKMLI 1199
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 46/163 (28%)
Query: 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXX 235
EI+AH+ + FS D R++A+ D V+IW+ S T +
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWN---------SMTGE------------ 696
Query: 236 XXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSC-SMDKTVRMW 294
V DE H + + S+ + LL+ S D +++W
Sbjct: 697 ----------LVHTYDE------------HSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 295 QVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
+ +C N +F H N V +F+P DD S S DG +++W
Sbjct: 735 DLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLW 776
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 260 PLQELHGHKGDVLDLAWSNSNYLLSCSMDK-TVRMWQVGCNQCLNV---------FDHHN 309
PL EL GH G V A+S + LL+ D +R+W V + L++ H
Sbjct: 1125 PLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGG 1184
Query: 310 YVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
+VT + F+P D IS G ++ W V
Sbjct: 1185 WVTDLCFSP-DGKMLISAG--GYIKWWNV 1210
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 166 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG 224
+ A + + H G + L FSPDG+ L S G G ++ W+V + S ++F +G
Sbjct: 1168 LHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNVVT-GESSQTFYTNG 1223
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Query: 171 LYTSQEIQAHKGCIWTLKFSPD-GRY---LASGGEDGVVRIWHVT---SVAASCKSFTDD 223
L+ + ++ HK I ++ ++P GR+ +A+G +DG +RI+ +T S AS +S T+
Sbjct: 202 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 261
Query: 224 GGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL 283
F ++A S+ Q+E L E H G+V ++W+ + +L
Sbjct: 262 NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE--LLSEHDDHNGEVWSVSWNLTGTIL 319
Query: 284 SCSMDK-TVRMWQVGCN---QCLNVF 305
S + D VR+W+ + +C++V
Sbjct: 320 SSAGDDGKVRLWKATYSNEFKCMSVI 345
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 15/141 (10%)
Query: 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSS 243
I ++ +SPDG+YLASG DG++ I+ +A T +G S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIF---DIATGKLLHTLEG-----HAMPIRSLTFSPDS 218
Query: 244 HVPVVIPDE----VFQIEESPLQ-ELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVG 297
+ V D+ ++ ++ + L L GH VL++A+ + + +S S DK+V++W VG
Sbjct: 219 QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278
Query: 298 CNQCLNV-FDHHNYVTCVQFN 317
C++ FDH + V V++N
Sbjct: 279 TRTCVHTFFDHQDQVWGVKYN 299
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 9/197 (4%)
Query: 185 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSH 244
WTL FSPD +YLA+G G V I+ V S S G F + +
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIFGVES-GKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184
Query: 245 VPVVIPDEVFQIEESP-LQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQV-GCNQC 301
++ +F I L L GH + L +S +S L++ S D ++++ V N
Sbjct: 185 DGII---NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241
Query: 302 LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIP 360
+ H ++V V F P DD +F+S S D V++W V + V + D +D + + Y
Sbjct: 242 GTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG 300
Query: 361 DGKGFIVGSITGTCHFY 377
+G + H Y
Sbjct: 301 NGSKIVSVGDDQEIHIY 317
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 92/261 (35%), Gaps = 74/261 (28%)
Query: 272 LDLAWSNSNYLL---------------SCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQ 315
LDL WS + L S S+D +R+W + + + D +
Sbjct: 70 LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLA 129
Query: 316 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTC 374
F+P D Y +G+ GKV I+GV + D R I +I Y PDGK G+I G
Sbjct: 130 FSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 375 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH 434
+ + + L L ++ H I + FS D SQ ++ S+D ++I DV H
Sbjct: 189 NIFDIATGKL-LHTLEGH------AMPIRSLTFSPD-SQLLVTASDDGYIKIY---DVQH 237
Query: 435 KFKGLPKSGSQ---------------------------------------------MSAS 449
SG
Sbjct: 238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK 297
Query: 450 FTTTGKHIISIGDDCRVYVWN 470
+ G I+S+GDD +++++
Sbjct: 298 YNGNGSKIVSVGDDQEIHIYD 318
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV 210
++ H I +L FSPD + L + +DG ++I+ V
Sbjct: 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Query: 171 LYTSQEIQAHKGCIWTLKFSPD-GRY---LASGGEDGVVRIWHVT---SVAASCKSFTDD 223
L+ + ++ HK I ++ ++P GR+ +A+G +DG +RI+ +T S AS +S T+
Sbjct: 204 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 263
Query: 224 GGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL 283
F ++A S+ Q+E L E H G+V ++W+ + +L
Sbjct: 264 NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE--LLSEHDDHNGEVWSVSWNLTGTIL 321
Query: 284 SCSMDK-TVRMWQVGCN---QCLNVF 305
S + D VR+W+ + +C++V
Sbjct: 322 SSAGDDGKVRLWKATYSNEFKCMSVI 347
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 171 LYTSQEIQAHKGCIWTLKFSPD-GRY---LASGGEDGVVRIWHVT---SVAASCKSFTDD 223
L+ + ++ HK I ++ ++P GR+ +A+G +DG +RI+ +T S AS +S T+
Sbjct: 204 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 263
Query: 224 GGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL 283
F ++A S+ Q+E L E H G+V ++W+ + +L
Sbjct: 264 NXFDNSADVDXDAQGRSDSNTEEKAELQSNLQVE--LLSEHDDHNGEVWSVSWNLTGTIL 321
Query: 284 SCSMDK-TVRMWQV 296
S + D VR+W+
Sbjct: 322 SSAGDDGKVRLWKA 335
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 211
H G +W++ ++ G L+S G+DG VR+W T
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 12/159 (7%)
Query: 276 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVR 334
+S+ +S D +V++W + L ++ H+ V CV P D F+S DG++
Sbjct: 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL 207
Query: 335 IWGVCEKRV---VDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVD 390
+W + + +D+ + +++ + P+ F G TG + ++ D
Sbjct: 208 LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL-------VNIKNPD 260
Query: 391 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 429
ITG+ +S S + SED + +LD
Sbjct: 261 SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 267 HKGDVLDLAWS--NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF 324
H ++ LA+S +S +L S S D TV + ++ H ++VT V ++P+D + F
Sbjct: 268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKF 327
Query: 325 ISGSIDGKV 333
+ D KV
Sbjct: 328 TTVGWDHKV 336
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 271 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFI 325
V D+AW + +L S V +W++ + L V ++H + V + D +
Sbjct: 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAV 155
Query: 326 SGSIDGKVRIWGVCEKRVV 344
SG D V++W + +K V+
Sbjct: 156 SGGKDFSVKVWDLSQKAVL 174
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 126/334 (37%), Gaps = 95/334 (28%)
Query: 178 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAA----SCKSFTDDGGFGSNAXX 232
+ H G I TL P +GRY+ SGG DGV+ ++ + + + +CK+ G
Sbjct: 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIG-------- 91
Query: 233 XXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 292
+ P ++H + + + ++ S S DKT++
Sbjct: 92 ------------------------RDHP--DVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125
Query: 293 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI--SGSIDGKVRIWGVCEKRVVDWADV- 349
+W Q +VF+ V +P+ + + G+ KV++ C+ + + +
Sbjct: 126 VWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL---CDLKSGSCSHIL 182
Query: 350 ---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406
R I A+ + P +I+ + + +V D ++ SG IT Q
Sbjct: 183 QGHRQEILAVSWSPR-YDYILATASAD-------------SRVKLWDVRRASGCLITLDQ 228
Query: 407 FSRDESQRIMITSEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDC 464
+ +SQ + + + H K GL FT+ G H++++G D
Sbjct: 229 HNGKKSQAV------------ESANTAHNGKVNGL---------CFTSDGLHLLTVGTDN 267
Query: 465 RVYVW----------NYDELCFPSSKQKNSVRSC 488
R+ +W NY ++C S K SC
Sbjct: 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC 301
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 260 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 317
P++ GH V D + + Y LS S DKT+R+W V + F H + V V +
Sbjct: 51 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 318 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 364
+ ISGS D +++W + + + D +S + +P+ K
Sbjct: 111 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 239
H I TL SPDG +AS G+DG + +W++ + A D F
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 248
Query: 240 XXSSHVPVVIPDEVFQIEESPLQELHGH----KGDVLDLAWS-NSNYLLSCSMDKTVRMW 294
++ + V D + +++ E G+ + + LAWS + L + D +R+W
Sbjct: 249 ATATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Query: 295 QV 296
QV
Sbjct: 308 QV 309
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 34/261 (13%)
Query: 264 LHGHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQV-GCNQCLNV----FDHHNYVTCVQF 316
L GH G V LA S N LLS S DKT+ W++ G +Q V F H+++
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 317 NPIDDNYFISGSIDGKVRIWGVC----------EKRVVDWADVRDVISAICYIPDGKGFI 366
D Y +S S D +R+W V K V D+ S I K
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 367 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426
V +I G C ND + +V +K + +T I D+ M+ + +
Sbjct: 127 VWTIKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDK----MVKAWN----- 176
Query: 427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 486
L+ + F G + + ++AS G I S G D + +WN + K ++
Sbjct: 177 LNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIMLWN-----LAAKKAMYTLS 229
Query: 487 SCEHFFSEGVSVAVQWPGIGT 507
+ + FS S W T
Sbjct: 230 AQDEVFSLAFSPNRYWLAAAT 250
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 13/210 (6%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + H + + DG Y S D +R+W V A+ +++ G S+
Sbjct: 53 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKSDVMSVD 108
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDL-------AWSNSNYLLSCSM 287
+V+ I+ L L GH V + A +S ++S
Sbjct: 109 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 168
Query: 288 DKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 346
DK V+ W + Q F HN + + +P D S DG++ +W + K+ +
Sbjct: 169 DKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYT 227
Query: 347 ADVRDVISAICYIPDGKGFIVGSITGTCHF 376
+D + ++ + P+ + TG F
Sbjct: 228 LSAQDEVFSLAFSPNRYWLAAATATGIKVF 257
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 260 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 317
P++ GH V D + + Y LS S DKT+R+W V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 318 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 364
+ ISGS D +++W + + + D +S + +P+ K
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 239
H I TL SPDG +AS G+DG + +W++ + A D F
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 240 XXSSHVPVVIPDEVFQIEESPLQELHGH----KGDVLDLAWS-NSNYLLSCSMDKTVRMW 294
++ + V D + +++ E G+ + + LAWS + L + D +R+W
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 295 QV 296
QV
Sbjct: 314 QV 315
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 34/261 (13%)
Query: 264 LHGHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQV-GCNQCLNV----FDHHNYVTCVQF 316
L GH G V LA S N LLS S DKT+ W++ G +Q V F H+++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 317 NPIDDNYFISGSIDGKVRIWGVC----------EKRVVDWADVRDVISAICYIPDGKGFI 366
D Y +S S D +R+W V K V D+ S I K
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 367 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426
V +I G C ND + +V +K + +T I D+ M+ + +
Sbjct: 133 VWTIKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDK----MVKAWN----- 182
Query: 427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 486
L+ + F G + + ++AS G I S G D + +WN + K ++
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIMLWN-----LAAKKAMYTLS 235
Query: 487 SCEHFFSEGVSVAVQWPGIGT 507
+ + FS S W T
Sbjct: 236 AQDEVFSLAFSPNRYWLAAAT 256
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 13/210 (6%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + H + + DG Y S D +R+W V A+ +++ G S+
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKSDVMSVD 114
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDL-------AWSNSNYLLSCSM 287
+V+ I+ L L GH V + A +S ++S
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 288 DKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 346
DK V+ W + Q F HN + + +P D S DG++ +W + K+ +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 347 ADVRDVISAICYIPDGKGFIVGSITGTCHF 376
+D + ++ + P+ + TG F
Sbjct: 234 LSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 260 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 317
P++ GH V D + + Y LS S DKT+R+W V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 318 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 364
+ ISGS D +++W + + + D +S + +P+ K
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 34/261 (13%)
Query: 264 LHGHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQV-GCNQCLNV----FDHHNYVTCVQF 316
L GH G V LA S N LLS S DKT+ W++ G +Q V F H+++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 317 NPIDDNYFISGSIDGKVRIWGVC----------EKRVVDWADVRDVISAICYIPDGKGFI 366
D Y +S S D +R+W V K V D+ S I K
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 367 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426
V +I G C ND + +V +K + +T I D+ M+ + +
Sbjct: 133 VWTIKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDK----MVKAWN----- 182
Query: 427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 486
L+ + F G + + ++AS G I S G D + +WN + K ++
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIMLWN-----LAAKKAMYTLS 235
Query: 487 SCEHFFSEGVSVAVQWPGIGT 507
+ + FS S W T
Sbjct: 236 AQDEVFSLAFSPNRYWLAAAT 256
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 239
H I TL SPDG +AS G+DG + +W++ + A D F
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 240 XXSSHVPVVIPDEVFQIEESPLQELHGH----KGDVLDLAWS-NSNYLLSCSMDKTVRMW 294
++ + V D + +++ E G+ + + LAWS + L + D +R+W
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 295 Q 295
Q
Sbjct: 314 Q 314
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 13/210 (6%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + H + + DG Y S D +R+W V A+ +++ G S+
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKSDVMSVD 114
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDL-------AWSNSNYLLSCSM 287
+V+ I+ L L GH V + A +S ++S
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 288 DKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 346
DK V+ W + Q F HN + + +P D S DG++ +W + K+ +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 347 ADVRDVISAICYIPDGKGFIVGSITGTCHF 376
+D + ++ + P+ + TG F
Sbjct: 234 LSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 260 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 317
P++ GH V D + + Y LS S DKT+R+W V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 318 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 364
+ ISGS D +++W + + + D +S + +P+ K
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 239
H I TL SPDG +AS G+DG + +W++ + A D F
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 240 XXSSHVPVVIPDEVFQIEESPLQELHGH----KGDVLDLAWS-NSNYLLSCSMDKTVRMW 294
++ + V D + +++ E G+ + + LAWS + L + D +R+W
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 295 QV 296
QV
Sbjct: 314 QV 315
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 34/261 (13%)
Query: 264 LHGHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQV-GCNQCLNV----FDHHNYVTCVQF 316
L GH G V LA S N LLS S DKT+ W++ G +Q V F H+++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 317 NPIDDNYFISGSIDGKVRIWGVC----------EKRVVDWADVRDVISAICYIPDGKGFI 366
D Y +S S D +R+W V K V D+ S I K
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 367 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426
V +I G C ND + +V +K + +T I D+ M+ + +
Sbjct: 133 VWTIKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDK----MVKAWN----- 182
Query: 427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 486
L+ + F G + + ++AS G I S G D + +WN + K ++
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIMLWN-----LAAKKAMYTLS 235
Query: 487 SCEHFFSEGVSVAVQWPGIGT 507
+ + FS S W T
Sbjct: 236 AQDEVFSLAFSPNRYWLAAAT 256
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 13/210 (6%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 234
+ + H + + DG Y S D +R+W V A+ +++ G S+
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKSDVMSVD 114
Query: 235 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDL-------AWSNSNYLLSCSM 287
+V+ I+ L L GH V + A +S ++S
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 288 DKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 346
DK V+ W + Q F HN + + +P D S DG++ +W + K+ +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 347 ADVRDVISAICYIPDGKGFIVGSITGTCHF 376
+D + ++ + P+ + TG F
Sbjct: 234 LSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 260 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 317
P++ GH V D + + Y LS S DKT+R+W V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 318 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 364
+ ISGS D +++W + + + D +S + +P+ K
Sbjct: 117 K-KASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 239
H I TL SPDG +AS G+DG + +W++ + A D F
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 240 XXSSHVPVVIPDEVFQIEESPLQELHGH----KGDVLDLAWS-NSNYLLSCSMDKTVRMW 294
++ + V D + +++ E G+ + + LAWS + L + D +R+W
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 295 QV 296
QV
Sbjct: 314 QV 315
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 97/261 (37%), Gaps = 34/261 (13%)
Query: 264 LHGHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQV-GCNQCLNV----FDHHNYVTCVQF 316
L GH G V LA S N LLS S DKT+ W++ G +Q V F H+++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 317 NPIDDNYFISGSIDGKVRIWGVC----------EKRVVDWADVRDVISAICYIPDGKGFI 366
D Y +S S D +R+W V K V D+ S I K
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 367 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426
V +I G C ND + +V +K + +T I D+ K
Sbjct: 133 VWTIKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDKX---------VKAWN 182
Query: 427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 486
L+ + F G + + ++AS G I S G D + +WN + K ++
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIXLWN-----LAAKKAXYTLS 235
Query: 487 SCEHFFSEGVSVAVQWPGIGT 507
+ + FS S W T
Sbjct: 236 AQDEVFSLAFSPNRYWLAAAT 256
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 282 LLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340
++S DK V+ W + Q F HN + + +P D S DG++ +W +
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAA 227
Query: 341 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 376
K+ +D + ++ + P+ + TG F
Sbjct: 228 KKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 267 HKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY-- 323
H G VLD+ WS+ + + + S DKT +MW + NQ + + H V + + NY
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA-PNYSC 143
Query: 324 FISGSIDGKVRIW 336
++GS D ++ W
Sbjct: 144 VMTGSWDKTLKFW 156
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 260 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 317
P++ GH V D + + Y LS S DKT+R+W V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 318 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 364
+ ISGS D +++W + + + D +S + +P+ K
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 239
H I TL SPDG +AS G+DG + +W++ + A D F
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 240 XXSSHVPVVIPDEVFQIEESPLQELHGHKG----DVLDLAWS-NSNYLLSCSMDKTVRMW 294
++ + V D + +++ E G+ + LAWS + L + D +R+W
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR-PEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 295 QV 296
QV
Sbjct: 314 QV 315
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 34/261 (13%)
Query: 264 LHGHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQV-GCNQCLNV----FDHHNYVTCVQF 316
L GH G V LA S N LLS S DKT+ W++ G +Q V F H+++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 317 NPIDDNYFISGSIDGKVRIWGVC----------EKRVVDWADVRDVISAICYIPDGKGFI 366
D Y +S S D +R+W V K V D+ S I K
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 367 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426
V +I G C ND + +V +K + +T I D+ M+ + +
Sbjct: 133 VWTIKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDK----MVKAWN----- 182
Query: 427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 486
L+ + F G + + ++AS G I S G D + +WN + K ++
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIMLWN-----LAAKKAMYTLS 235
Query: 487 SCEHFFSEGVSVAVQWPGIGT 507
+ + FS S W T
Sbjct: 236 AQDEVFSLAFSPNRYWLAAAT 256
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 282 LLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340
++S DK V+ W + Q F HN + + +P D S DG++ +W +
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA 227
Query: 341 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 376
K+ + +D + ++ + P+ + TG F
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 266 GHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQVG--------CNQCLNVFDHHNYVTCVQ 315
GH VLD+AW N N + S S D TV +W++ + + H V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 316 FNPIDDNYFISGSIDGKVRIWGV 338
++P N +S D + +W V
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDV 161
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 22/162 (13%)
Query: 277 SNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335
S+ +S S D +++W + L+ + H VTCV +P D+ F+S S D ++ +
Sbjct: 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 336 WGV-CEKRVVDWADVRDVISAICYIPDGKG--------FIVGSITGTCHFYKASGNDLKL 386
W C K SA Y+P F+ G GT L
Sbjct: 197 WDTRCPKPASQIG-----CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL 251
Query: 387 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 428
+TG+ FS + SED L +LD
Sbjct: 252 S-------SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 46/130 (35%)
Query: 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXX 237
QAH I LKF P G L S +D ++IW V GSN
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--------------GSNP------- 171
Query: 238 XXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQV 296
+ L GH+ V D+A +LS S+D T+R+W+
Sbjct: 172 ------------------------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 207
Query: 297 GCNQCLNVFD 306
G ++ F+
Sbjct: 208 GTGTTIHTFN 217
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 19/151 (12%)
Query: 263 ELHGHKGDVLDL-AWSNSNYLLSCSMDKTV--RMWQVGCN------------QCLNVFDH 307
L KG++L + A S++ + CS+D + RM G N + N+ H
Sbjct: 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMH 249
Query: 308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGK 363
VT V NP D + + S+D V+IW + + R + R ++A C+ PDG
Sbjct: 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309
Query: 364 GFIVGSITGTCHFYKASGNDLKLEKVDFHDR 394
+ Y AS D L + R
Sbjct: 310 RLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 340
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 19/151 (12%)
Query: 263 ELHGHKGDVLDL-AWSNSNYLLSCSMDKTV--RMWQVGCN------------QCLNVFDH 307
L KG++L + A S++ + CS+D + RM G N + N+ H
Sbjct: 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMH 249
Query: 308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGK 363
VT V NP D + + S+D V+IW + + R + R ++A C+ PDG
Sbjct: 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309
Query: 364 GFIVGSITGTCHFYKASGNDLKLEKVDFHDR 394
+ Y AS D L + R
Sbjct: 310 RLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 340
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 46/130 (35%)
Query: 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXX 237
QAH I LKF P G L S +D ++IW V GSN
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--------------GSNP------- 174
Query: 238 XXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQV 296
+ L GH+ V D+A +LS S+D T+R+W+
Sbjct: 175 ------------------------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210
Query: 297 GCNQCLNVFD 306
G ++ F+
Sbjct: 211 GTGTTIHTFN 220
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 19/151 (12%)
Query: 263 ELHGHKGDVLDL-AWSNSNYLLSCSMDKTV--RMWQVGCN------------QCLNVFDH 307
L KG++L + A S++ + CS+D + RM G N + N+ H
Sbjct: 191 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMH 250
Query: 308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGK 363
VT V NP D + + S+D V+IW + + R + R ++A C+ PDG
Sbjct: 251 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 310
Query: 364 GFIVGSITGTCHFYKASGNDLKLEKVDFHDR 394
+ Y AS D L + R
Sbjct: 311 RLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 341
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 266 GHKGDVLDLAW--SNSNYLLSCSMDKTVRMWQVG--------CNQCLNVFDHHNYVTCVQ 315
GH VLD+AW N N + S S D TV +W++ + + H V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 316 FNPIDDNYFISGSIDGKVRIWGV 338
++P N +S D + +W V
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV 161
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 209
+Q H G + T+ SP G ASGGEDG +R+ H
Sbjct: 311 VQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 36/192 (18%)
Query: 261 LQELHGHKGDVLDLAWS-----NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQ 315
L L GH G + WS + Y ++ S D ++++W V QC+ + V V+
Sbjct: 67 LGTLDGHTGTI----WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVE 122
Query: 316 FNPIDDNYFIS---------GSID--------GKVRIWGVCEKRV--VDWADVRDVISAI 356
F+P NYF++ GSI+ + V E+ + + + D +
Sbjct: 123 FSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181
Query: 357 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416
+ GK I G G Y S N ++ +D H++ I+ +QFS D + I
Sbjct: 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK------SISDMQFSPDLTYFIT 235
Query: 417 ITSEDSKLRILD 428
+S D+ ++D
Sbjct: 236 -SSRDTNSFLVD 246
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 259 SPLQELH-GHKGDVLDLAW--SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCV 314
+PLQ L+ GH+ +L L W + + LLS D TV +W + L+ F N+
Sbjct: 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKT 311
Query: 315 QFNPIDDNYFISGSIDGKVRI 335
+F P + F S D K+ +
Sbjct: 312 KFAPEAPDLFACASFDNKIEV 332
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 273 DLAWSNSNYLLSCSMDK-TVRMWQVG-CNQCLNVF----DHHNYVTCVQFNPIDDNYFIS 326
DL WS++N +++ ++D ++ ++ N +N +H + V V+FN DN S
Sbjct: 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS 131
Query: 327 GSIDGKVRIW 336
G +G++ IW
Sbjct: 132 GGNNGEIFIW 141
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 282 LLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW 336
++S S+D T+ +++G ++ L HN +T + NP+ ISGS DG++ W
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEW 362
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL 302
+G + L+W +S + D T+R+W V ++C+
Sbjct: 253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 287
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 319 IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVIS--AICYIPDGKGFIVG-SITGTC 374
+D F + D +R+W V + V W + + + + G G I+ S+ GT
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 375 HFYKASGNDLKLEKVDFHDRKKTS 398
+FY+ G+D L+ + H++ T+
Sbjct: 322 NFYEL-GHDEVLKTISGHNKGITA 344
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 282 LLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW 336
++S S+D T+ +++G ++ L HN +T + NP+ ISGS DG++ W
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIXEW 362
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL 302
+G + L+W +S + D T+R+W V ++C+
Sbjct: 253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 287
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 319 IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVIS--AICYIPDGKGFIVG-SITGTC 374
+D F + D +R+W V + V W + + + + G G I+ S+ GT
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 375 HFYKASGNDLKLEKVDFHDRKKTS 398
+FY+ G+D L+ + H++ T+
Sbjct: 322 NFYEL-GHDEVLKTISGHNKGITA 344
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 8/182 (4%)
Query: 186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHV 245
++K+S DG +L+ G +G+V I+ V S G + S
Sbjct: 139 SVKWSHDGSFLSVGLGNGLVDIYDV----ESQTKLRTMAGHQARVGCLSWNRHVLSSGSR 194
Query: 246 PVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVGCN-QCLN 303
I +I + L GH +V LAW S+ L S D V++W +
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT 254
Query: 304 VFDHHNYVTCVQFNPIDDNYFIS--GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD 361
+H+ V V + P N + G++D ++ W V+ D ++++ + P
Sbjct: 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPH 314
Query: 362 GK 363
K
Sbjct: 315 SK 316
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 74/217 (34%), Gaps = 57/217 (26%)
Query: 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 236
+Q H + L + DG LASGG D VV+IW S S FT
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS---SIPKFTKT------------- 256
Query: 237 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVR 292
H V +AW SN L + +MDK +
Sbjct: 257 -----------------------------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287
Query: 293 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGKVRIW-----GVCEKRVVDW 346
W +N D + VT + ++P + G D + IW G+ ++ +
Sbjct: 288 FWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347
Query: 347 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 383
D R + SA+ PDG+ + F++ D
Sbjct: 348 HDTRVLYSALS--PDGRILSTAASDENLKFWRVYDGD 382
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV 213
AH G ++ L +SPDG +AS D ++IW+V ++
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 39/120 (32%)
Query: 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 239
H + +++++PDG AS G DG + +++ T G F
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYN-------GVDGTKTGVF------------- 228
Query: 240 XXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGC 298
E+ L+ + H G V L WS + + S S DKT+++W V
Sbjct: 229 -----------------EDDSLKNV-AHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS 219
T +YT +H+ + K SP G Y ASG G VRIW T K+
Sbjct: 52 TEIYTEH---SHQTTV--AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 97
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 21/184 (11%)
Query: 260 PLQELHGHKGDVLDLAWS-NSN-YLLSCSMDKTVRMWQVGCN-------QCLNVFDHHNY 310
P L GH+ + L+W+ N N YLLS S D T+ +W + N+F H
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 234
Query: 311 VTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA----ICYIPDGKGF 365
V V ++ + ++ F S + D K+ IW + D +A + + P +
Sbjct: 235 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 294
Query: 366 IV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 424
+ GS T + LKL + H ++I +Q+S + + D +L
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESH------KDEIFQVQWSPHNETILASSGTDRRL 348
Query: 425 RILD 428
+ D
Sbjct: 349 HVWD 352
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 68/168 (40%)
Query: 174 SQEIQAHKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXX 232
S + AH + L F+P + LA+G D V +W + ++ SF
Sbjct: 272 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF------------ 319
Query: 233 XXXXXXXXXSSHVPVVIPDEVFQIEESPLQE-----------LH---------------- 265
SH DE+FQ++ SP E LH
Sbjct: 320 ---------ESH-----KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 365
Query: 266 ------------GHKGDVLDLAWSNSNYLLSCSM--DKTVRMWQVGCN 299
GH + D +W+ + + CS+ D +++WQ+ N
Sbjct: 366 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 21/184 (11%)
Query: 260 PLQELHGHKGDVLDLAWS-NSN-YLLSCSMDKTVRMWQVGCN-------QCLNVFDHHNY 310
P L GH+ + L+W+ N N YLLS S D T+ +W + N+F H
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 232
Query: 311 VTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA----ICYIPDGKGF 365
V V ++ + ++ F S + D K+ IW + D +A + + P +
Sbjct: 233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 292
Query: 366 IV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 424
+ GS T + LKL + H ++I +Q+S + + D +L
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESH------KDEIFQVQWSPHNETILASSGTDRRL 346
Query: 425 RILD 428
+ D
Sbjct: 347 HVWD 350
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 68/168 (40%)
Query: 174 SQEIQAHKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXX 232
S + AH + L F+P + LA+G D V +W + ++ SF
Sbjct: 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF------------ 317
Query: 233 XXXXXXXXXSSHVPVVIPDEVFQIEESPLQE-----------LH---------------- 265
SH DE+FQ++ SP E LH
Sbjct: 318 ---------ESH-----KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363
Query: 266 ------------GHKGDVLDLAWSNSNYLLSCSM--DKTVRMWQVGCN 299
GH + D +W+ + + CS+ D +++WQ+ N
Sbjct: 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 21/184 (11%)
Query: 260 PLQELHGHKGDVLDLAWS-NSN-YLLSCSMDKTVRMWQVGCN-------QCLNVFDHHNY 310
P L GH+ + L+W+ N N YLLS S D T+ +W + N+F H
Sbjct: 177 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 236
Query: 311 VTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA----ICYIPDGKGF 365
V V ++ + ++ F S + D K+ IW + D +A + + P +
Sbjct: 237 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 296
Query: 366 IV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 424
+ GS T + LKL + H ++I +Q+S + + D +L
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHK------DEIFQVQWSPHNETILASSGTDRRL 350
Query: 425 RILD 428
+ D
Sbjct: 351 HVWD 354
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 68/168 (40%)
Query: 174 SQEIQAHKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXX 232
S + AH + L F+P + LA+G D V +W + ++ SF
Sbjct: 274 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF------------ 321
Query: 233 XXXXXXXXXSSHVPVVIPDEVFQIEESPLQE-----------LH---------------- 265
SH DE+FQ++ SP E LH
Sbjct: 322 ---------ESH-----KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 367
Query: 266 ------------GHKGDVLDLAWSNSNYLLSCSM--DKTVRMWQVGCN 299
GH + D +W+ + + CS+ D +++WQ+ N
Sbjct: 368 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 266 GHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQVGCN---QCLNVFDHHNY-VTCVQFNPI 319
GH V D+AW + + S + D+ + +W N + ++ D H V C+ FNP
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 320 DDNYFISGSIDGKVRIWGV--CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 371
+ +GS D V +W + + ++ + +D I + + P + + S T
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 44/239 (18%)
Query: 259 SPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCN-------QCLNVFDHHN 309
+P L GH+ + L+W++ S +LLS S D TV +W + +F H+
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 310 YVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA----ICYIPDGKG 364
V V ++ + ++ F S + D K+ IW + + D +A + + P +
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 365 FIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 423
+ GS T + LKL + H ++I + +S + + D +
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHK------DEIFQVHWSPHNETILASSGTDRR 343
Query: 424 LRILDGVDVIHKFKGLPKSGSQMSAS---------FTTTGKHIISIGDDCRVYVWNYDE 473
L + D L K G + SA G H I D + WN +E
Sbjct: 344 LNVWD----------LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD----FSWNPNE 388
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 266 GHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQVGCN---QCLNVFDHHNY-VTCVQFNPI 319
GH V D+AW + + S + D+ + +W N + ++ D H V C+ FNP
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 320 DDNYFISGSIDGKVRIWGV--CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 371
+ +GS D V +W + + ++ + +D I + + P + + S T
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 44/239 (18%)
Query: 259 SPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCN-------QCLNVFDHHN 309
+P L GH+ + L+W++ S +LLS S D TV +W + +F H+
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 310 YVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA----ICYIPDGKG 364
V V ++ + ++ F S + D K+ IW + + D +A + + P +
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 365 FIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 423
+ GS T + LKL + H ++I + +S + + D +
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHK------DEIFQVHWSPHNETILASSGTDRR 343
Query: 424 LRILDGVDVIHKFKGLPKSGSQMSAS---------FTTTGKHIISIGDDCRVYVWNYDE 473
L + D L K G + SA G H I D + WN +E
Sbjct: 344 LNVWD----------LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD----FSWNPNE 388
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 261 LQELHGHKGDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY---VTCV 314
+ +L GH+G V +AW++ N L SCS D+ V +W+ +H + V V
Sbjct: 50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSV 109
Query: 315 QFNPIDDNYFIS-GSIDGKVRI 335
+ P D ++ GS DG + +
Sbjct: 110 CWAPHDYGLILACGSSDGAISL 131
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 266 GHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQVGCNQC----LNVFDHHNYVTCVQFNPI 319
GH V D++W + + S + D+ + +W N +V H V C+ FNP
Sbjct: 225 GHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPY 284
Query: 320 DDNYFISGSIDGKVRIWGV--CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 371
+ +GS D V +W + + ++ + +D I + + P + + S T
Sbjct: 285 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 21/185 (11%)
Query: 259 SPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGC-------NQCLNVFDHHN 309
+P L GH+ + L+W+ S +LLS S D T+ +W + +F H
Sbjct: 168 NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT 227
Query: 310 YVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA----ICYIPDGKG 364
V V ++ + ++ F S + D K+ IW + D +A + + P +
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287
Query: 365 FIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 423
+ GS T + LKL + H ++I +Q+S + + D +
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHK------DEIFQVQWSPHNETILASSGTDRR 341
Query: 424 LRILD 428
L + D
Sbjct: 342 LNVWD 346
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 278 NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336
+S SC D + +W + + F H + +C+ + D +G +D VR W
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSW 210
Query: 337 GVCEKRVVDWADVRDVISAICYIPDGKGFIVG 368
+ E R + D I ++ Y P G+ VG
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG 242
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW 208
++ H+ C+ +LKF+ G++ S G+D ++ W
Sbjct: 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 61/166 (36%), Gaps = 9/166 (5%)
Query: 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-SVAASCKSFTDDGGFGSNAXXX 233
++ Q H + S DG L +GG D VR W + FT
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG 236
Query: 234 XXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVR 292
SS+V EV + + +LH H+ VL L ++ + +S D +
Sbjct: 237 EWLAVGMESSNV------EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290
Query: 293 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
W+ + + V + +DD Y ++GS D K ++ V
Sbjct: 291 AWRTPYGASIFQSKESSSVLSCDIS-VDDKYIVTGSGDKKATVYEV 335
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 265 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPID 320
HG+ + L + N LLS S D +R+W + + + +F H + V ++ +
Sbjct: 150 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 209
Query: 321 DNYFISGSIDGKVRIWGVCEKRVVD 345
+ +S +D +++W + KR+++
Sbjct: 210 EK-IMSCGMDHSLKLWRINSKRMMN 233
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 300 QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
QC+ + H N + ++F+P D N +S S D +R+W +
Sbjct: 142 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 181
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 265 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPID 320
HG+ + L + N LLS S D +R+W + + + +F H + V ++ +
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 168
Query: 321 DNYFISGSIDGKVRIWGVCEKRVVD 345
+ +S +D +++W + KR+++
Sbjct: 169 EK-IMSCGMDHSLKLWRINSKRMMN 192
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 300 QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
QC+ + H N + ++F+P D N +S S D +R+W +
Sbjct: 101 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 140
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 265 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPID 320
HG+ + L + N LLS S D +R+W + + + +F H + V ++ +
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 173
Query: 321 DNYFISGSIDGKVRIWGVCEKRVVD 345
+ +S +D +++W + KR+++
Sbjct: 174 EK-IMSCGMDHSLKLWRINSKRMMN 197
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 300 QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
QC+ + H N + ++F+P D N +S S D +R+W +
Sbjct: 106 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 265 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPID 320
HG+ + L + N LLS S D +R+W + + + +F H + V ++ +
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 172
Query: 321 DNYFISGSIDGKVRIWGVCEKRVVD 345
+ +S +D +++W + KR+++
Sbjct: 173 EK-IMSCGMDHSLKLWRINSKRMMN 196
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 300 QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
QC+ + H N + ++F+P D N +S S D +R+W +
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 265 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPID 320
HG+ + L + N LLS S D +R+W + + + +F H + V ++ +
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 172
Query: 321 DNYFISGSIDGKVRIWGVCEKRVVD 345
+ +S +D +++W + KR+++
Sbjct: 173 EK-IMSCGMDHSLKLWRINSKRMMN 196
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 300 QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338
QC+ + H N + ++F+P D N +S S D +R+W +
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|2XSP|A Chain A, Structure Of Cellobiohydrolase 1 (Cel7a) From
Heterobasidion Annosum
pdb|2YG1|A Chain A, Apo Structure Of Cellobiohydrolase 1 (Cel7a) From
Heterobasidion Annosum
pdb|2YG1|B Chain B, Apo Structure Of Cellobiohydrolase 1 (Cel7a) From
Heterobasidion Annosum
Length = 440
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 483
LDG D + G+ SG+ ++ F T G + +IG RVY+ + D+ + K KN
Sbjct: 73 LDGADYSGTY-GISTSGNALTLKFVTNGPYSTNIGS--RVYLMSADDTNYEIFKLKN 126
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 309 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD------WADVRDVISAICYIPDG 362
N +T +P + Y I+GS G ++IW + E V + D ++ I IP+
Sbjct: 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF 123
Query: 363 KGFIVGSITGTCHFYKAS 380
F V S G K +
Sbjct: 124 DAFAVSSKDGQIIVLKVN 141
>pdb|3UPY|A Chain A, Crystal Structure Of The Brucella Abortus Enzyme
Catalyzing The First Committed Step Of The
Methylerythritol 4-Phosphate Pathway.
pdb|3UPY|B Chain B, Crystal Structure Of The Brucella Abortus Enzyme
Catalyzing The First Committed Step Of The
Methylerythritol 4-Phosphate Pathway
Length = 445
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470
E+ +I +T ++ + +DVI G+P+ G++ + GKH++ + + V +
Sbjct: 89 EAGKIAVTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGP 148
Query: 471 Y 471
Y
Sbjct: 149 Y 149
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV 210
AH + +L F+ G L S G DG +R W V
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
>pdb|3UPL|A Chain A, Crystal Structure Of The Brucella Abortus Enzyme
Catalyzing The First Committed Step Of The
Methylerythritol 4-Phosphate Pathway.
pdb|3UPL|B Chain B, Crystal Structure Of The Brucella Abortus Enzyme
Catalyzing The First Committed Step Of The
Methylerythritol 4-Phosphate Pathway
Length = 446
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470
E+ +I +T ++ + +DVI G+P+ G++ + GKH++ + + V +
Sbjct: 89 EAGKIAVTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGP 148
Query: 471 Y 471
Y
Sbjct: 149 Y 149
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV 210
AH + +L F+ G L S G DG +R W V
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,686,494
Number of Sequences: 62578
Number of extensions: 830816
Number of successful extensions: 2753
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1791
Number of HSP's gapped (non-prelim): 626
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)