Query 006909
Match_columns 626
No_of_seqs 865 out of 4687
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 16:13:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 5.6E-60 1.2E-64 483.8 41.8 448 154-626 239-712 (712)
2 KOG0271 Notchless-like WD40 re 100.0 5.4E-47 1.2E-51 353.1 24.5 330 170-618 104-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-41 5.6E-46 319.5 21.0 280 179-566 173-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 5.1E-40 1.1E-44 306.6 22.7 251 171-474 147-441 (480)
5 KOG0318 WD40 repeat stress pro 100.0 2E-38 4.3E-43 307.4 33.5 411 172-619 50-601 (603)
6 KOG0272 U4/U6 small nuclear ri 100.0 5.1E-39 1.1E-43 304.0 19.2 249 169-470 205-458 (459)
7 KOG0286 G-protein beta subunit 100.0 3.3E-37 7.2E-42 278.6 29.3 285 171-470 45-343 (343)
8 KOG0295 WD40 repeat-containing 100.0 6.8E-38 1.5E-42 291.1 23.2 360 80-497 5-390 (406)
9 KOG0279 G protein beta subunit 100.0 3.3E-36 7.2E-41 270.6 29.3 293 172-516 6-305 (315)
10 KOG0293 WD40 repeat-containing 100.0 1.1E-36 2.5E-41 286.8 24.1 316 96-474 150-472 (519)
11 KOG0291 WD40-repeat-containing 100.0 5.9E-35 1.3E-39 294.3 33.2 377 167-619 131-549 (893)
12 KOG0319 WD40-repeat-containing 100.0 1.8E-35 4E-40 297.9 27.1 408 168-619 91-618 (775)
13 KOG0279 G protein beta subunit 100.0 1.8E-34 3.9E-39 259.5 25.9 246 172-472 54-313 (315)
14 KOG0315 G-protein beta subunit 100.0 9.2E-34 2E-38 250.6 27.7 259 170-475 29-291 (311)
15 KOG0282 mRNA splicing factor [ 100.0 1.9E-35 4.1E-40 284.5 17.9 276 170-506 203-486 (503)
16 KOG0265 U5 snRNP-specific prot 100.0 5E-34 1.1E-38 259.1 24.8 248 175-474 41-298 (338)
17 KOG0286 G-protein beta subunit 100.0 2.6E-33 5.7E-38 253.4 25.3 287 259-566 46-343 (343)
18 KOG0315 G-protein beta subunit 100.0 2.9E-33 6.2E-38 247.5 24.0 271 194-570 11-290 (311)
19 KOG0273 Beta-transducin family 100.0 1.4E-32 3.1E-37 263.6 28.8 269 181-515 235-514 (524)
20 KOG0263 Transcription initiati 100.0 1.8E-33 3.9E-38 286.7 23.1 276 176-474 373-651 (707)
21 KOG0291 WD40-repeat-containing 100.0 1.6E-31 3.5E-36 269.6 34.5 402 179-622 53-510 (893)
22 KOG0316 Conserved WD40 repeat- 100.0 2E-32 4.2E-37 240.3 23.2 244 174-475 10-260 (307)
23 KOG0318 WD40 repeat stress pro 100.0 2.7E-31 5.8E-36 258.0 31.7 339 168-568 177-602 (603)
24 KOG0296 Angio-associated migra 100.0 8.6E-32 1.9E-36 250.7 26.4 325 174-619 57-397 (399)
25 KOG0263 Transcription initiati 100.0 1.3E-32 2.9E-37 280.4 22.6 209 170-432 440-651 (707)
26 KOG0273 Beta-transducin family 100.0 9.9E-32 2.1E-36 257.9 26.4 332 175-619 173-522 (524)
27 KOG0285 Pleiotropic regulator 100.0 1.3E-31 2.8E-36 248.4 24.2 299 169-528 139-440 (460)
28 KOG0284 Polyadenylation factor 100.0 1.4E-32 3.1E-37 259.1 15.9 250 171-474 128-382 (464)
29 KOG0306 WD40-repeat-containing 100.0 8.1E-31 1.8E-35 264.5 29.1 401 172-625 98-669 (888)
30 PLN00181 protein SPA1-RELATED; 100.0 2.3E-30 5.1E-35 292.1 35.8 303 176-567 478-792 (793)
31 KOG0319 WD40-repeat-containing 100.0 1.6E-31 3.6E-36 269.5 23.3 409 179-620 60-577 (775)
32 KOG0266 WD40 repeat-containing 100.0 5E-30 1.1E-34 269.2 33.5 252 174-474 151-411 (456)
33 KOG0645 WD40 repeat protein [G 100.0 1.1E-29 2.3E-34 227.8 28.2 274 171-472 4-311 (312)
34 KOG0276 Vesicle coat complex C 100.0 7.3E-30 1.6E-34 252.5 29.1 275 173-502 5-288 (794)
35 KOG0282 mRNA splicing factor [ 100.0 1.2E-31 2.6E-36 258.4 15.1 293 257-618 203-503 (503)
36 KOG0284 Polyadenylation factor 100.0 3.8E-31 8.2E-36 249.6 17.9 281 180-526 95-379 (464)
37 cd00200 WD40 WD40 domain, foun 100.0 6.4E-29 1.4E-33 246.3 34.7 278 174-515 2-282 (289)
38 KOG0295 WD40 repeat-containing 100.0 2.1E-30 4.6E-35 241.3 21.3 248 171-471 140-405 (406)
39 KOG0265 U5 snRNP-specific prot 100.0 5.5E-30 1.2E-34 232.9 22.9 253 171-470 80-336 (338)
40 KOG0275 Conserved WD40 repeat- 100.0 2.4E-30 5.1E-35 236.9 20.6 315 111-476 150-471 (508)
41 KOG0645 WD40 repeat protein [G 100.0 9.1E-29 2E-33 221.9 30.2 207 261-473 7-226 (312)
42 KOG1407 WD40 repeat protein [F 100.0 2.5E-29 5.4E-34 224.2 25.0 279 175-516 14-294 (313)
43 KOG0266 WD40 repeat-containing 100.0 2.7E-29 5.9E-34 263.7 27.9 250 173-472 195-454 (456)
44 KOG0643 Translation initiation 100.0 1.2E-28 2.5E-33 220.6 24.8 297 177-567 6-316 (327)
45 KOG0293 WD40 repeat-containing 100.0 1.2E-29 2.7E-34 239.4 18.6 291 258-620 214-513 (519)
46 KOG0292 Vesicle coat complex C 100.0 7.6E-29 1.7E-33 254.0 23.7 288 177-512 5-320 (1202)
47 KOG1446 Histone H3 (Lys4) meth 100.0 2.5E-27 5.4E-32 218.0 31.2 276 171-497 4-289 (311)
48 KOG0285 Pleiotropic regulator 100.0 9.5E-29 2.1E-33 229.5 21.8 214 251-474 134-350 (460)
49 KOG0281 Beta-TrCP (transducin 100.0 2.3E-29 4.9E-34 232.6 16.8 242 168-474 224-479 (499)
50 KOG0306 WD40-repeat-containing 100.0 2.3E-27 5.1E-32 239.6 32.4 291 262-569 367-665 (888)
51 KOG0281 Beta-TrCP (transducin 100.0 1.3E-29 2.8E-34 234.2 14.3 244 169-477 182-433 (499)
52 KOG0277 Peroxisomal targeting 100.0 8.1E-29 1.7E-33 220.1 18.7 240 180-471 59-308 (311)
53 KOG0647 mRNA export protein (c 100.0 1.3E-27 2.8E-32 217.6 25.4 275 179-505 25-315 (347)
54 KOG0640 mRNA cleavage stimulat 100.0 4.2E-28 9E-33 221.2 21.5 234 164-431 95-336 (430)
55 KOG0296 Angio-associated migra 100.0 2.7E-27 5.9E-32 220.8 24.5 273 173-472 98-398 (399)
56 KOG0640 mRNA cleavage stimulat 100.0 1.4E-27 3.1E-32 217.6 21.9 208 261-474 105-337 (430)
57 KOG0313 Microtubule binding pr 100.0 2.2E-27 4.9E-32 222.3 23.3 253 172-472 135-418 (423)
58 KOG1539 WD repeat protein [Gen 100.0 8.6E-27 1.9E-31 238.3 27.6 381 168-621 189-649 (910)
59 KOG2096 WD40 repeat protein [G 100.0 1.4E-26 3E-31 212.1 25.9 310 151-470 56-400 (420)
60 KOG0288 WD40 repeat protein Ti 100.0 4.8E-28 1E-32 229.1 16.5 281 172-515 166-452 (459)
61 cd00200 WD40 WD40 domain, foun 100.0 5.2E-26 1.1E-30 225.4 31.9 244 173-470 43-289 (289)
62 KOG0292 Vesicle coat complex C 100.0 4.7E-27 1E-31 241.0 24.4 251 167-472 37-321 (1202)
63 KOG1036 Mitotic spindle checkp 100.0 2.2E-26 4.8E-31 210.6 26.1 269 180-503 12-294 (323)
64 KOG0294 WD40 repeat-containing 100.0 1.1E-26 2.4E-31 212.8 24.1 243 173-474 35-283 (362)
65 KOG0278 Serine/threonine kinas 100.0 5.2E-28 1.1E-32 214.3 14.4 286 175-570 8-299 (334)
66 PLN00181 protein SPA1-RELATED; 100.0 4E-26 8.7E-31 257.8 33.3 244 180-471 531-792 (793)
67 KOG0772 Uncharacterized conser 100.0 5.1E-27 1.1E-31 227.7 21.8 255 175-474 161-447 (641)
68 KOG0310 Conserved WD40 repeat- 100.0 9.9E-27 2.1E-31 225.0 23.7 248 173-474 60-311 (487)
69 KOG2048 WD40 repeat protein [G 100.0 2.6E-25 5.7E-30 223.0 34.0 248 180-474 24-277 (691)
70 KOG1407 WD40 repeat protein [F 100.0 5.1E-27 1.1E-31 209.5 19.1 286 262-623 14-311 (313)
71 KOG0288 WD40 repeat protein Ti 100.0 6.2E-27 1.3E-31 221.6 19.5 248 171-470 209-459 (459)
72 KOG0643 Translation initiation 100.0 3E-26 6.4E-31 205.2 22.5 232 263-496 5-244 (327)
73 KOG0300 WD40 repeat-containing 99.9 2.8E-26 6E-31 209.8 22.0 253 170-476 137-432 (481)
74 KOG0313 Microtubule binding pr 99.9 5E-26 1.1E-30 213.3 24.2 264 179-510 103-405 (423)
75 PTZ00421 coronin; Provisional 99.9 3.9E-25 8.4E-30 231.2 33.6 256 180-474 19-292 (493)
76 PTZ00421 coronin; Provisional 99.9 2.4E-25 5.3E-30 232.7 31.0 234 176-454 70-315 (493)
77 KOG0268 Sof1-like rRNA process 99.9 2.5E-27 5.3E-32 220.7 13.9 247 174-473 59-346 (433)
78 PTZ00420 coronin; Provisional 99.9 5E-25 1.1E-29 231.2 31.9 240 173-455 66-319 (568)
79 KOG0308 Conserved WD40 repeat- 99.9 5.1E-26 1.1E-30 226.7 22.2 247 180-474 20-287 (735)
80 KOG0278 Serine/threonine kinas 99.9 9.8E-27 2.1E-31 206.2 15.0 244 174-474 52-299 (334)
81 KOG0299 U3 snoRNP-associated p 99.9 1.9E-25 4E-30 214.6 24.9 292 174-511 135-442 (479)
82 KOG1063 RNA polymerase II elon 99.9 1.9E-25 4.2E-30 224.2 25.1 433 173-623 46-651 (764)
83 PTZ00420 coronin; Provisional 99.9 1.7E-24 3.7E-29 227.2 33.2 207 259-474 65-295 (568)
84 KOG0305 Anaphase promoting com 99.9 1.6E-25 3.5E-30 225.3 24.3 240 180-474 216-463 (484)
85 KOG0289 mRNA splicing factor [ 99.9 5.5E-25 1.2E-29 209.6 26.5 237 182-473 220-463 (506)
86 KOG0277 Peroxisomal targeting 99.9 1.7E-25 3.8E-30 199.0 21.4 278 272-619 12-308 (311)
87 KOG0276 Vesicle coat complex C 99.9 1.3E-25 2.7E-30 222.7 22.3 246 169-467 43-294 (794)
88 KOG1332 Vesicle coat complex C 99.9 7.7E-26 1.7E-30 200.1 17.8 249 178-473 8-287 (299)
89 KOG0316 Conserved WD40 repeat- 99.9 4.8E-25 1E-29 193.9 22.4 281 259-566 8-297 (307)
90 KOG0264 Nucleosome remodeling 99.9 2.1E-25 4.6E-30 214.4 21.9 255 179-474 122-406 (422)
91 KOG0274 Cdc4 and related F-box 99.9 5.5E-25 1.2E-29 230.2 26.5 249 165-475 233-485 (537)
92 KOG0274 Cdc4 and related F-box 99.9 2E-24 4.3E-29 226.1 30.2 233 180-475 207-444 (537)
93 KOG0289 mRNA splicing factor [ 99.9 1.1E-24 2.4E-29 207.4 24.6 250 169-471 249-505 (506)
94 KOG0973 Histone transcription 99.9 1.1E-24 2.4E-29 230.2 26.3 292 180-517 12-348 (942)
95 KOG0310 Conserved WD40 repeat- 99.9 7.4E-25 1.6E-29 212.1 22.9 271 181-506 26-302 (487)
96 KOG0973 Histone transcription 99.9 8.5E-25 1.8E-29 231.1 25.2 264 176-474 64-357 (942)
97 KOG0641 WD40 repeat protein [G 99.9 1.3E-23 2.9E-28 183.6 27.6 251 172-472 80-349 (350)
98 KOG0299 U3 snoRNP-associated p 99.9 1.6E-24 3.4E-29 208.3 22.4 245 178-470 199-454 (479)
99 KOG2106 Uncharacterized conser 99.9 2.7E-23 5.9E-28 201.4 29.5 413 174-619 97-580 (626)
100 KOG0275 Conserved WD40 repeat- 99.9 2.6E-25 5.7E-30 203.9 14.7 280 266-566 211-507 (508)
101 KOG0268 Sof1-like rRNA process 99.9 2.1E-25 4.6E-30 207.8 13.4 280 260-620 58-345 (433)
102 KOG0772 Uncharacterized conser 99.9 1.8E-24 3.9E-29 210.1 19.0 296 258-565 157-484 (641)
103 KOG1273 WD40 repeat protein [G 99.9 7.6E-24 1.6E-28 194.0 21.8 294 184-552 26-337 (405)
104 KOG0641 WD40 repeat protein [G 99.9 1.8E-22 3.9E-27 176.5 28.7 296 179-513 30-338 (350)
105 KOG2106 Uncharacterized conser 99.9 3.3E-22 7.1E-27 194.0 32.3 368 179-619 198-625 (626)
106 KOG1063 RNA polymerase II elon 99.9 3E-23 6.6E-28 208.5 25.7 410 170-620 180-699 (764)
107 KOG1274 WD40 repeat protein [G 99.9 7.8E-23 1.7E-27 212.0 29.2 270 179-498 11-285 (933)
108 KOG0305 Anaphase promoting com 99.9 1.2E-23 2.6E-28 211.9 21.5 277 270-570 179-463 (484)
109 KOG1408 WD40 repeat protein [F 99.9 8.7E-23 1.9E-27 205.2 26.4 202 400-621 460-672 (1080)
110 KOG0269 WD40 repeat-containing 99.9 5.4E-24 1.2E-28 216.4 17.5 244 184-475 90-343 (839)
111 KOG1446 Histone H3 (Lys4) meth 99.9 3E-22 6.5E-27 184.6 27.0 292 259-624 5-309 (311)
112 KOG0300 WD40 repeat-containing 99.9 2.8E-23 6E-28 190.2 19.2 284 171-474 180-478 (481)
113 KOG0283 WD40 repeat-containing 99.9 3.7E-23 8E-28 213.5 22.1 240 262-512 260-575 (712)
114 KOG0301 Phospholipase A2-activ 99.9 1.1E-22 2.4E-27 204.6 22.7 282 170-513 3-288 (745)
115 KOG2096 WD40 repeat protein [G 99.9 1.4E-22 3E-27 186.1 21.3 283 261-566 79-400 (420)
116 KOG4283 Transcription-coupled 99.9 2.2E-22 4.8E-27 182.8 20.5 225 178-433 40-279 (397)
117 KOG2055 WD40 repeat protein [G 99.9 6E-22 1.3E-26 190.5 23.9 280 181-511 213-510 (514)
118 KOG0308 Conserved WD40 repeat- 99.9 8.1E-23 1.8E-27 204.0 18.0 316 173-570 65-395 (735)
119 KOG1408 WD40 repeat protein [F 99.9 2.5E-22 5.3E-27 202.0 21.4 341 184-570 327-715 (1080)
120 KOG0639 Transducin-like enhanc 99.9 1.8E-22 4E-27 195.4 19.4 268 179-500 417-691 (705)
121 KOG0264 Nucleosome remodeling 99.9 1.3E-22 2.8E-27 195.3 18.0 220 171-431 167-405 (422)
122 KOG0647 mRNA export protein (c 99.9 2.3E-21 5E-26 177.0 24.7 241 171-461 62-312 (347)
123 KOG1539 WD repeat protein [Gen 99.9 5.4E-21 1.2E-25 196.2 30.1 363 184-619 162-605 (910)
124 KOG0302 Ribosome Assembly prot 99.9 7.6E-22 1.6E-26 185.2 21.7 256 178-469 148-435 (440)
125 KOG0650 WD40 repeat nucleolar 99.9 8.8E-22 1.9E-26 194.8 22.5 290 171-469 390-732 (733)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-20 2.6E-25 189.4 31.4 251 174-474 24-281 (300)
127 KOG0301 Phospholipase A2-activ 99.9 1.4E-21 2.9E-26 196.9 22.7 236 175-473 51-289 (745)
128 KOG2055 WD40 repeat protein [G 99.9 1E-21 2.2E-26 188.9 20.8 280 268-568 213-512 (514)
129 KOG2445 Nuclear pore complex c 99.9 8.5E-21 1.8E-25 173.8 25.7 251 178-473 10-319 (361)
130 KOG1036 Mitotic spindle checkp 99.9 4.7E-21 1E-25 175.8 23.8 277 267-609 12-293 (323)
131 KOG0267 Microtubule severing p 99.9 5.1E-23 1.1E-27 207.8 10.8 237 174-464 21-260 (825)
132 KOG0639 Transducin-like enhanc 99.9 4.7E-22 1E-26 192.6 16.5 238 180-471 464-703 (705)
133 KOG0270 WD40 repeat-containing 99.9 1.9E-21 4.1E-26 186.4 20.0 252 193-474 192-451 (463)
134 KOG0646 WD40 repeat protein [G 99.9 2.6E-21 5.7E-26 186.6 21.0 246 180-472 80-350 (476)
135 KOG0321 WD40 repeat-containing 99.9 3.7E-21 8E-26 191.9 22.4 252 186-477 54-352 (720)
136 KOG2048 WD40 repeat protein [G 99.9 3.9E-20 8.5E-25 186.1 28.9 380 171-619 100-547 (691)
137 KOG0269 WD40 repeat-containing 99.9 3E-21 6.4E-26 196.7 18.7 202 270-478 89-302 (839)
138 KOG4227 WD40 repeat protein [G 99.9 1.3E-20 2.8E-25 177.4 21.1 263 170-474 45-324 (609)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2E-19 4.3E-24 180.5 31.4 226 193-474 1-239 (300)
140 KOG4283 Transcription-coupled 99.9 2.8E-20 6.1E-25 169.2 22.1 283 264-567 39-364 (397)
141 KOG4328 WD40 protein [Function 99.9 2.3E-20 5E-25 179.5 22.1 289 169-505 174-486 (498)
142 KOG1445 Tumor-specific antigen 99.9 1.3E-20 2.9E-25 187.3 20.7 131 353-483 630-761 (1012)
143 KOG1332 Vesicle coat complex C 99.9 6.4E-21 1.4E-25 169.1 16.3 210 171-428 46-284 (299)
144 KOG0646 WD40 repeat protein [G 99.9 1.5E-19 3.2E-24 174.7 24.9 199 267-475 80-310 (476)
145 KOG4328 WD40 protein [Function 99.9 3.6E-20 7.8E-25 178.2 20.4 290 260-566 178-493 (498)
146 KOG0294 WD40 repeat-containing 99.8 2.5E-19 5.4E-24 164.8 21.2 202 174-431 76-282 (362)
147 KOG0321 WD40 repeat-containing 99.8 1.9E-19 4.1E-24 179.9 20.7 250 176-474 95-393 (720)
148 KOG1034 Transcriptional repres 99.8 1.8E-19 4E-24 166.5 18.7 290 175-516 32-375 (385)
149 KOG0267 Microtubule severing p 99.8 7E-21 1.5E-25 192.4 9.8 226 264-498 24-253 (825)
150 KOG1273 WD40 repeat protein [G 99.8 4.6E-19 9.9E-24 162.9 19.0 293 271-624 26-326 (405)
151 KOG0270 WD40 repeat-containing 99.8 2E-19 4.2E-24 172.7 17.0 205 178-432 240-451 (463)
152 KOG0303 Actin-binding protein 99.8 1.1E-18 2.3E-23 165.1 21.0 234 177-454 77-321 (472)
153 KOG0307 Vesicle coat complex C 99.8 6.3E-20 1.4E-24 195.3 13.9 248 182-474 65-329 (1049)
154 KOG0302 Ribosome Assembly prot 99.8 2.5E-19 5.4E-24 168.4 16.2 207 169-423 199-432 (440)
155 KOG0650 WD40 repeat nucleolar 99.8 1.7E-18 3.7E-23 171.7 21.8 293 257-565 389-732 (733)
156 KOG2445 Nuclear pore complex c 99.8 4.6E-18 1E-22 156.0 22.7 269 265-569 10-319 (361)
157 KOG1274 WD40 repeat protein [G 99.8 5.3E-18 1.2E-22 176.4 25.8 262 265-553 10-286 (933)
158 KOG0642 Cell-cycle nuclear pro 99.8 1.8E-19 4E-24 177.9 14.0 258 176-474 289-563 (577)
159 KOG1034 Transcriptional repres 99.8 1E-18 2.3E-23 161.5 17.3 245 179-472 87-383 (385)
160 KOG2919 Guanine nucleotide-bin 99.8 7.1E-18 1.5E-22 155.6 22.7 247 185-474 53-329 (406)
161 KOG4378 Nuclear protein COP1 [ 99.8 2.1E-18 4.5E-23 167.3 20.1 207 280-494 92-304 (673)
162 KOG1538 Uncharacterized conser 99.8 3.3E-18 7.2E-23 171.3 20.7 268 183-507 14-287 (1081)
163 COG2319 FOG: WD40 repeat [Gene 99.8 2.3E-16 4.9E-21 165.6 35.3 369 176-621 60-443 (466)
164 KOG1538 Uncharacterized conser 99.8 4.7E-18 1E-22 170.2 18.8 244 170-473 42-294 (1081)
165 KOG1334 WD40 repeat protein [G 99.8 1.7E-18 3.6E-23 168.1 14.9 288 169-501 130-454 (559)
166 KOG4378 Nuclear protein COP1 [ 99.8 3.7E-18 8.1E-23 165.6 16.8 214 185-454 83-305 (673)
167 KOG0644 Uncharacterized conser 99.8 4.7E-19 1E-23 181.7 10.4 275 171-512 180-465 (1113)
168 KOG0290 Conserved WD40 repeat- 99.8 4.6E-17 1E-21 148.2 21.9 230 265-505 93-346 (364)
169 KOG0322 G-protein beta subunit 99.8 9.7E-18 2.1E-22 150.7 16.5 243 174-471 7-322 (323)
170 KOG1963 WD40 repeat protein [G 99.8 7.7E-17 1.7E-21 167.7 24.6 424 172-619 48-537 (792)
171 KOG1009 Chromatin assembly com 99.8 2.2E-17 4.7E-22 157.1 18.3 265 173-474 57-374 (434)
172 KOG0303 Actin-binding protein 99.8 3.8E-17 8.2E-22 154.7 19.7 206 261-474 74-296 (472)
173 KOG1188 WD40 repeat protein [G 99.8 2.5E-17 5.4E-22 153.4 18.0 191 280-475 41-245 (376)
174 KOG0307 Vesicle coat complex C 99.8 2.8E-18 6E-23 182.9 13.2 238 268-512 64-326 (1049)
175 KOG4227 WD40 repeat protein [G 99.7 7.2E-17 1.6E-21 152.3 18.3 208 261-473 49-275 (609)
176 KOG1188 WD40 repeat protein [G 99.7 4.6E-17 1E-21 151.6 16.7 258 171-473 60-347 (376)
177 KOG1517 Guanine nucleotide bin 99.7 6E-16 1.3E-20 163.0 25.3 284 178-512 1061-1380(1387)
178 KOG1009 Chromatin assembly com 99.7 8.4E-16 1.8E-20 146.4 23.1 287 181-517 13-365 (434)
179 KOG1587 Cytoplasmic dynein int 99.7 4.5E-16 9.7E-21 162.0 23.3 248 180-474 241-518 (555)
180 KOG0322 G-protein beta subunit 99.7 4.3E-17 9.3E-22 146.5 13.5 296 258-620 4-323 (323)
181 KOG1963 WD40 repeat protein [G 99.7 1.4E-15 3.1E-20 158.4 26.6 340 179-570 203-585 (792)
182 KOG0290 Conserved WD40 repeat- 99.7 1E-15 2.2E-20 139.6 18.9 242 179-467 94-360 (364)
183 PRK11028 6-phosphogluconolacto 99.7 4.9E-15 1.1E-19 150.6 26.2 281 282-619 5-303 (330)
184 KOG1310 WD40 repeat protein [G 99.7 1.5E-16 3.2E-21 156.5 14.1 242 167-474 36-305 (758)
185 COG2319 FOG: WD40 repeat [Gene 99.7 5.4E-14 1.2E-18 147.5 35.0 249 171-474 145-402 (466)
186 PRK11028 6-phosphogluconolacto 99.7 2E-14 4.2E-19 146.3 28.8 248 180-473 33-305 (330)
187 KOG1007 WD repeat protein TSSC 99.7 2.3E-15 5.1E-20 137.1 19.0 258 172-473 54-362 (370)
188 KOG4497 Uncharacterized conser 99.7 1.2E-15 2.5E-20 141.4 16.9 223 186-471 13-239 (447)
189 KOG2919 Guanine nucleotide-bin 99.7 6.6E-15 1.4E-19 136.2 21.8 276 270-557 51-360 (406)
190 KOG0771 Prolactin regulatory e 99.7 5.5E-16 1.2E-20 148.8 14.8 192 185-430 148-354 (398)
191 KOG1524 WD40 repeat-containing 99.7 2E-15 4.4E-20 148.2 18.6 189 258-470 94-284 (737)
192 KOG1523 Actin-related protein 99.7 6.3E-15 1.4E-19 136.4 20.8 240 180-464 9-270 (361)
193 KOG1240 Protein kinase contain 99.7 9.1E-15 2E-19 156.7 24.7 220 247-474 1027-1275(1431)
194 KOG0649 WD40 repeat protein [G 99.7 6.5E-15 1.4E-19 131.1 19.7 245 182-474 11-276 (325)
195 KOG1587 Cytoplasmic dynein int 99.7 1.1E-14 2.4E-19 151.7 24.7 246 267-514 241-517 (555)
196 KOG1007 WD repeat protein TSSC 99.7 4.4E-15 9.6E-20 135.3 17.7 219 172-430 113-361 (370)
197 KOG1240 Protein kinase contain 99.7 4.1E-14 9E-19 151.7 27.6 263 170-476 1037-1338(1431)
198 KOG2321 WD40 repeat protein [G 99.7 9.7E-15 2.1E-19 144.8 20.9 295 162-474 33-345 (703)
199 KOG2139 WD40 repeat protein [G 99.6 4.7E-14 1E-18 132.6 22.8 273 181-508 98-426 (445)
200 KOG1445 Tumor-specific antigen 99.6 3.5E-15 7.5E-20 149.1 16.0 207 180-430 626-844 (1012)
201 KOG2110 Uncharacterized conser 99.6 1.8E-13 4E-18 129.2 25.7 235 181-474 5-250 (391)
202 KOG2111 Uncharacterized conser 99.6 4.8E-13 1E-17 124.1 27.8 277 184-516 8-314 (346)
203 PRK01742 tolB translocation pr 99.6 3.3E-14 7.3E-19 149.2 23.0 198 261-472 196-401 (429)
204 KOG0642 Cell-cycle nuclear pro 99.6 4.2E-15 9E-20 147.4 14.8 225 169-437 332-568 (577)
205 KOG1523 Actin-related protein 99.6 1.1E-13 2.4E-18 128.3 22.7 207 263-474 5-238 (361)
206 KOG1310 WD40 repeat protein [G 99.6 4E-15 8.7E-20 146.5 12.0 241 260-517 42-307 (758)
207 KOG1517 Guanine nucleotide bin 99.6 7.2E-14 1.6E-18 147.7 22.1 255 181-474 1109-1383(1387)
208 KOG3881 Uncharacterized conser 99.6 1.3E-13 2.8E-18 131.2 21.7 221 263-491 100-339 (412)
209 KOG1524 WD40 repeat-containing 99.6 2.3E-14 5E-19 140.9 17.2 261 266-562 12-280 (737)
210 PRK01742 tolB translocation pr 99.6 5.8E-14 1.3E-18 147.4 21.6 206 288-508 183-396 (429)
211 KOG0771 Prolactin regulatory e 99.6 1.6E-14 3.5E-19 138.8 15.1 197 272-473 148-355 (398)
212 KOG2394 WD40 protein DMR-N9 [G 99.6 9.5E-14 2.1E-18 136.9 20.7 189 278-474 183-454 (636)
213 PRK03629 tolB translocation pr 99.6 2.2E-12 4.7E-17 135.2 28.4 200 262-474 192-408 (429)
214 KOG0649 WD40 repeat protein [G 99.6 2.3E-12 5E-17 115.0 23.6 243 177-470 58-314 (325)
215 KOG0644 Uncharacterized conser 99.5 1.1E-14 2.4E-19 150.0 8.5 280 260-569 182-469 (1113)
216 PRK04922 tolB translocation pr 99.5 1.8E-12 3.9E-17 136.4 25.5 202 261-474 196-413 (433)
217 KOG1272 WD40-repeat-containing 99.5 2.8E-14 6.1E-19 138.2 10.6 255 181-464 129-401 (545)
218 KOG2139 WD40 repeat protein [G 99.5 5.1E-12 1.1E-16 119.1 25.2 257 181-473 140-432 (445)
219 PRK03629 tolB translocation pr 99.5 2E-12 4.4E-17 135.4 24.4 219 175-452 192-427 (429)
220 PRK05137 tolB translocation pr 99.5 6E-12 1.3E-16 132.6 28.2 202 261-474 194-414 (435)
221 PRK02889 tolB translocation pr 99.5 6.4E-12 1.4E-16 131.8 27.4 202 261-472 188-403 (427)
222 KOG1334 WD40 repeat protein [G 99.5 2.4E-13 5.2E-18 132.6 15.1 308 259-619 133-465 (559)
223 KOG1272 WD40-repeat-containing 99.5 6.9E-14 1.5E-18 135.5 11.0 227 270-508 131-358 (545)
224 KOG4497 Uncharacterized conser 99.5 9E-12 1.9E-16 115.9 23.8 245 182-474 49-393 (447)
225 PRK05137 tolB translocation pr 99.5 4.5E-12 9.9E-17 133.6 24.3 220 174-452 194-432 (435)
226 KOG2315 Predicted translation 99.5 1.6E-11 3.5E-16 122.3 25.4 321 182-625 35-395 (566)
227 KOG1354 Serine/threonine prote 99.5 6.6E-12 1.4E-16 117.6 21.3 263 180-474 24-361 (433)
228 PRK02889 tolB translocation pr 99.5 5.7E-12 1.2E-16 132.2 23.8 208 289-506 176-393 (427)
229 KOG2110 Uncharacterized conser 99.5 3.2E-11 6.9E-16 114.3 25.7 235 268-514 5-249 (391)
230 PRK04922 tolB translocation pr 99.5 6.7E-12 1.5E-16 132.1 23.1 220 174-452 196-432 (433)
231 PF08662 eIF2A: Eukaryotic tra 99.5 6.7E-12 1.5E-16 115.8 19.7 113 267-383 58-182 (194)
232 PF02239 Cytochrom_D1: Cytochr 99.4 8.8E-11 1.9E-15 119.4 25.6 324 282-622 9-349 (369)
233 KOG3881 Uncharacterized conser 99.4 2.8E-11 6E-16 115.5 19.3 203 177-431 101-321 (412)
234 PF08662 eIF2A: Eukaryotic tra 99.4 3.6E-11 7.8E-16 111.0 19.7 149 312-474 9-181 (194)
235 PF02239 Cytochrom_D1: Cytochr 99.4 1.3E-10 2.8E-15 118.2 25.1 292 259-570 27-349 (369)
236 KOG1354 Serine/threonine prote 99.4 1.1E-11 2.3E-16 116.2 15.0 239 181-431 84-360 (433)
237 TIGR02800 propeller_TolB tol-p 99.4 3.3E-10 7.1E-15 119.4 27.9 201 261-473 182-398 (417)
238 KOG2394 WD40 protein DMR-N9 [G 99.4 1.8E-11 3.9E-16 121.1 16.3 162 181-360 219-384 (636)
239 PRK04792 tolB translocation pr 99.4 2.8E-10 6.1E-15 119.8 25.8 202 262-474 211-427 (448)
240 TIGR02800 propeller_TolB tol-p 99.3 1.5E-10 3.2E-15 122.1 22.8 198 175-429 183-396 (417)
241 KOG2111 Uncharacterized conser 99.3 1.3E-09 2.7E-14 101.7 25.1 162 259-431 86-257 (346)
242 PRK00178 tolB translocation pr 99.3 4.8E-10 1E-14 118.4 25.3 206 257-474 187-408 (430)
243 KOG2041 WD40 repeat protein [G 99.3 1.1E-10 2.4E-15 119.0 18.7 249 181-463 14-279 (1189)
244 PRK04792 tolB translocation pr 99.3 3.1E-10 6.8E-15 119.4 23.3 220 175-452 211-446 (448)
245 KOG2315 Predicted translation 99.3 1.4E-09 3.1E-14 108.7 25.3 263 183-474 75-392 (566)
246 PRK00178 tolB translocation pr 99.3 5E-10 1.1E-14 118.3 23.8 220 175-452 192-427 (430)
247 PF10282 Lactonase: Lactonase, 99.3 1.5E-08 3.2E-13 103.3 31.9 250 181-472 36-322 (345)
248 KOG2321 WD40 repeat protein [G 99.3 5.5E-10 1.2E-14 111.6 20.2 208 266-477 49-307 (703)
249 KOG1409 Uncharacterized conser 99.3 5.4E-10 1.2E-14 105.0 18.4 253 170-474 13-272 (404)
250 COG5354 Uncharacterized protei 99.2 2.1E-09 4.6E-14 106.2 23.1 324 267-625 31-400 (561)
251 KOG4547 WD40 repeat-containing 99.2 1.3E-09 2.9E-14 109.7 21.9 139 281-429 72-219 (541)
252 COG5354 Uncharacterized protei 99.2 1.8E-09 3.8E-14 106.7 21.8 319 180-570 31-397 (561)
253 PRK01029 tolB translocation pr 99.2 8.6E-09 1.9E-13 107.7 27.6 203 263-474 179-405 (428)
254 PF10282 Lactonase: Lactonase, 99.2 3.2E-09 6.9E-14 108.2 21.9 281 282-568 2-322 (345)
255 PF04762 IKI3: IKI3 family; I 99.2 3.7E-08 8E-13 111.2 31.4 283 180-474 119-458 (928)
256 COG2706 3-carboxymuconate cycl 99.2 1.4E-07 3E-12 90.3 30.4 252 178-474 36-323 (346)
257 KOG0974 WD-repeat protein WDR6 99.2 1.3E-09 2.8E-14 116.4 18.3 185 279-474 99-290 (967)
258 COG4946 Uncharacterized protei 99.1 1.1E-07 2.5E-12 93.2 28.6 172 278-461 331-507 (668)
259 PRK01029 tolB translocation pr 99.1 1.6E-08 3.4E-13 105.8 23.8 179 289-475 165-362 (428)
260 TIGR02658 TTQ_MADH_Hv methylam 99.1 2.1E-08 4.6E-13 99.7 22.0 271 289-570 27-332 (352)
261 KOG2314 Translation initiation 99.1 1.8E-08 3.8E-13 100.7 20.7 317 270-622 212-575 (698)
262 KOG0280 Uncharacterized conser 99.1 9.7E-09 2.1E-13 94.8 17.1 197 270-473 123-334 (339)
263 TIGR02658 TTQ_MADH_Hv methylam 99.1 4.9E-07 1.1E-11 90.0 30.5 243 189-474 53-332 (352)
264 KOG0974 WD-repeat protein WDR6 99.1 1.4E-09 3.1E-14 116.1 13.3 147 187-381 139-289 (967)
265 KOG1912 WD40 repeat protein [G 99.1 2.1E-08 4.6E-13 103.8 20.8 261 170-482 44-374 (1062)
266 KOG2314 Translation initiation 99.1 4.9E-08 1.1E-12 97.6 22.6 232 184-473 213-479 (698)
267 PLN02919 haloacid dehalogenase 99.0 2.4E-07 5.1E-12 106.8 31.2 206 269-475 624-891 (1057)
268 KOG1409 Uncharacterized conser 99.0 2.9E-08 6.2E-13 93.7 18.5 199 180-429 67-269 (404)
269 KOG4532 WD40-like repeat conta 99.0 7.5E-08 1.6E-12 87.9 20.0 188 281-473 130-332 (344)
270 KOG1064 RAVE (regulator of V-A 99.0 5.4E-09 1.2E-13 117.1 14.3 187 266-474 2206-2400(2439)
271 KOG4547 WD40 repeat-containing 99.0 1E-07 2.2E-12 96.4 22.0 183 281-473 7-221 (541)
272 PF15492 Nbas_N: Neuroblastoma 99.0 5.2E-07 1.1E-11 83.9 24.7 189 269-475 44-262 (282)
273 KOG4190 Uncharacterized conser 99.0 1.6E-09 3.5E-14 107.6 8.8 246 175-471 729-987 (1034)
274 COG2706 3-carboxymuconate cycl 99.0 2.7E-07 5.8E-12 88.4 23.1 277 288-568 15-321 (346)
275 KOG0280 Uncharacterized conser 99.0 2.8E-07 6.2E-12 85.3 22.3 201 267-474 68-286 (339)
276 KOG2041 WD40 repeat protein [G 99.0 2.9E-08 6.2E-13 101.8 17.2 250 167-472 57-337 (1189)
277 COG5170 CDC55 Serine/threonine 98.9 2.2E-08 4.8E-13 93.0 14.1 250 180-473 25-368 (460)
278 KOG1064 RAVE (regulator of V-A 98.9 5.4E-09 1.2E-13 117.1 11.5 193 177-385 2204-2403(2439)
279 PLN02919 haloacid dehalogenase 98.9 4.1E-07 8.9E-12 104.9 25.7 201 272-474 571-835 (1057)
280 PF08450 SGL: SMP-30/Gluconola 98.9 5.3E-06 1.2E-10 80.4 29.9 221 186-461 4-244 (246)
281 TIGR03300 assembly_YfgL outer 98.9 5.7E-07 1.2E-11 93.3 24.6 184 279-474 105-299 (377)
282 PF04762 IKI3: IKI3 family; I 98.9 1.1E-06 2.4E-11 99.5 28.4 243 179-472 73-379 (928)
283 COG4946 Uncharacterized protei 98.9 1.1E-06 2.4E-11 86.5 23.4 246 179-473 357-655 (668)
284 PRK04043 tolB translocation pr 98.9 1.2E-06 2.7E-11 91.0 25.6 191 270-474 189-402 (419)
285 KOG0309 Conserved WD40 repeat- 98.8 1.9E-08 4.2E-13 103.5 11.5 199 180-429 23-231 (1081)
286 KOG4532 WD40-like repeat conta 98.8 6.2E-07 1.3E-11 82.0 19.5 191 279-474 84-284 (344)
287 PRK04043 tolB translocation pr 98.8 1.2E-06 2.7E-11 91.0 24.0 191 182-430 188-400 (419)
288 KOG4190 Uncharacterized conser 98.7 5.8E-08 1.3E-12 96.7 9.2 210 258-474 725-950 (1034)
289 KOG0882 Cyclophilin-related pe 98.7 5.7E-07 1.2E-11 88.0 15.4 287 179-510 7-369 (558)
290 PF00400 WD40: WD domain, G-be 98.7 4.2E-08 9.1E-13 64.5 5.2 37 173-209 3-39 (39)
291 COG5170 CDC55 Serine/threonine 98.7 9.4E-08 2E-12 88.9 8.7 236 182-428 86-365 (460)
292 KOG3914 WD repeat protein WDR4 98.6 4.1E-07 9E-12 87.9 12.6 160 183-385 64-228 (390)
293 KOG4714 Nucleoporin [Nuclear s 98.6 5.5E-07 1.2E-11 82.0 12.3 92 290-381 160-255 (319)
294 KOG2695 WD40 repeat protein [G 98.6 2E-07 4.3E-12 88.2 8.8 146 325-474 228-378 (425)
295 TIGR03300 assembly_YfgL outer 98.6 3.1E-05 6.8E-10 80.3 25.5 177 279-469 190-376 (377)
296 PF13360 PQQ_2: PQQ-like domai 98.6 4.6E-05 9.9E-10 73.4 25.0 192 276-475 33-233 (238)
297 KOG1912 WD40 repeat protein [G 98.5 8.7E-06 1.9E-10 85.0 19.8 246 180-473 14-305 (1062)
298 KOG0309 Conserved WD40 repeat- 98.5 2E-07 4.2E-12 96.3 7.8 212 175-430 108-339 (1081)
299 PF08450 SGL: SMP-30/Gluconola 98.5 0.00017 3.7E-09 69.9 27.7 188 273-473 4-214 (246)
300 KOG3914 WD repeat protein WDR4 98.5 2.3E-06 5.1E-11 82.9 13.8 153 272-433 66-226 (390)
301 KOG1832 HIV-1 Vpr-binding prot 98.5 9.3E-08 2E-12 100.4 4.5 226 165-460 1085-1319(1516)
302 KOG4714 Nucleoporin [Nuclear s 98.5 1.3E-06 2.8E-11 79.7 10.3 196 271-473 39-255 (319)
303 PF15492 Nbas_N: Neuroblastoma 98.5 8E-05 1.7E-09 69.7 22.0 191 184-433 46-262 (282)
304 KOG2114 Vacuolar assembly/sort 98.4 8.2E-05 1.8E-09 79.1 23.4 198 183-437 27-250 (933)
305 PF07433 DUF1513: Protein of u 98.4 0.00053 1.1E-08 66.2 26.3 232 184-466 7-279 (305)
306 KOG2066 Vacuolar assembly/sort 98.3 9E-06 1.9E-10 85.5 14.6 178 307-507 38-228 (846)
307 KOG2066 Vacuolar assembly/sort 98.3 2.3E-05 4.9E-10 82.6 17.3 186 181-430 39-233 (846)
308 KOG1275 PAB-dependent poly(A) 98.3 1.3E-05 2.8E-10 85.4 15.4 177 281-470 149-340 (1118)
309 KOG1645 RING-finger-containing 98.3 9.8E-05 2.1E-09 71.8 19.8 82 260-341 185-268 (463)
310 KOG0882 Cyclophilin-related pe 98.3 7.2E-06 1.6E-10 80.5 11.9 203 266-475 7-234 (558)
311 PF00400 WD40: WD domain, G-be 98.3 1.5E-06 3.2E-11 57.0 4.7 36 260-295 3-39 (39)
312 KOG1920 IkappaB kinase complex 98.3 0.00018 4E-09 79.4 23.0 200 180-432 67-324 (1265)
313 KOG1275 PAB-dependent poly(A) 98.3 2.4E-05 5.2E-10 83.4 15.5 148 270-428 179-340 (1118)
314 PRK11138 outer membrane biogen 98.2 0.00034 7.3E-09 73.0 24.1 188 279-474 120-314 (394)
315 KOG2695 WD40 repeat protein [G 98.2 6.5E-06 1.4E-10 78.1 8.7 153 275-432 218-378 (425)
316 KOG1832 HIV-1 Vpr-binding prot 98.2 1.4E-06 3.1E-11 91.8 4.7 195 259-474 1092-1293(1516)
317 PF11768 DUF3312: Protein of u 98.2 0.00029 6.2E-09 72.6 20.7 116 305-430 202-329 (545)
318 PF07433 DUF1513: Protein of u 98.2 0.0031 6.8E-08 61.0 26.2 200 272-476 8-251 (305)
319 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0015 3.3E-08 66.8 26.2 231 268-503 42-347 (353)
320 KOG1920 IkappaB kinase complex 98.1 0.00059 1.3E-08 75.6 23.6 197 268-474 68-324 (1265)
321 PRK11138 outer membrane biogen 98.1 0.0013 2.9E-08 68.5 25.8 179 279-471 205-393 (394)
322 PF13360 PQQ_2: PQQ-like domai 98.1 0.0014 3E-08 63.0 23.5 181 288-475 2-194 (238)
323 KOG1008 Uncharacterized conser 98.1 2.8E-06 6.1E-11 86.9 4.1 203 181-430 56-275 (783)
324 PF04053 Coatomer_WDAD: Coatom 98.1 0.00078 1.7E-08 70.1 22.1 224 179-473 30-263 (443)
325 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0053 1.2E-07 56.7 24.3 105 281-387 25-130 (354)
326 PF11768 DUF3312: Protein of u 98.0 0.00033 7.2E-09 72.1 18.1 92 375-474 239-331 (545)
327 PF08596 Lgl_C: Lethal giant l 98.0 0.0025 5.4E-08 65.5 24.0 262 183-474 3-292 (395)
328 KOG3617 WD40 and TPR repeat-co 98.0 0.00051 1.1E-08 72.9 18.6 69 270-339 61-131 (1416)
329 PRK02888 nitrous-oxide reducta 98.0 0.0015 3.2E-08 69.2 21.9 132 330-475 214-354 (635)
330 KOG1008 Uncharacterized conser 97.9 4.9E-06 1.1E-10 85.2 3.2 198 268-474 56-277 (783)
331 PF06977 SdiA-regulated: SdiA- 97.9 0.0059 1.3E-07 58.2 23.3 205 262-469 15-247 (248)
332 KOG1645 RING-finger-containing 97.9 0.00019 4E-09 69.9 12.5 214 346-570 189-421 (463)
333 COG0823 TolB Periplasmic compo 97.9 0.00071 1.5E-08 70.1 17.4 193 261-463 185-390 (425)
334 KOG3621 WD40 repeat-containing 97.8 0.005 1.1E-07 64.7 22.7 116 180-340 32-155 (726)
335 PF03178 CPSF_A: CPSF A subuni 97.8 0.0066 1.4E-07 61.4 23.0 171 289-468 62-261 (321)
336 PRK02888 nitrous-oxide reducta 97.8 0.004 8.6E-08 66.0 21.0 184 277-473 201-405 (635)
337 KOG3617 WD40 and TPR repeat-co 97.7 0.00063 1.4E-08 72.2 14.1 69 184-297 62-131 (1416)
338 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.0029 6.4E-08 64.8 19.0 83 287-371 21-121 (353)
339 KOG2114 Vacuolar assembly/sort 97.7 0.0031 6.7E-08 67.6 18.6 158 316-475 31-204 (933)
340 KOG3621 WD40 repeat-containing 97.7 0.00045 9.8E-09 72.2 12.3 162 307-474 32-199 (726)
341 PF03178 CPSF_A: CPSF A subuni 97.7 0.03 6.4E-07 56.6 25.5 173 289-473 2-203 (321)
342 PF08553 VID27: VID27 cytoplas 97.6 0.0013 2.8E-08 72.2 15.6 148 320-472 492-647 (794)
343 PF04841 Vps16_N: Vps16, N-ter 97.6 0.046 1E-06 56.9 25.7 173 290-473 62-247 (410)
344 PF06433 Me-amine-dh_H: Methyl 97.6 0.08 1.7E-06 52.1 25.3 198 274-475 100-323 (342)
345 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.005 1.1E-07 49.8 14.2 101 184-334 2-109 (111)
346 COG3391 Uncharacterized conser 97.6 0.03 6.4E-07 57.9 23.9 200 271-474 76-285 (381)
347 PF14583 Pectate_lyase22: Olig 97.6 0.059 1.3E-06 54.1 24.5 195 274-474 86-330 (386)
348 PF02897 Peptidase_S9_N: Proly 97.5 0.17 3.7E-06 53.2 29.5 240 183-474 125-406 (414)
349 COG3386 Gluconolactonase [Carb 97.5 0.046 9.9E-07 54.1 23.0 181 275-462 73-275 (307)
350 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.0078 1.7E-07 48.7 13.6 103 311-426 2-110 (111)
351 cd00216 PQQ_DH Dehydrogenases 97.4 0.069 1.5E-06 57.3 25.2 181 287-481 173-433 (488)
352 smart00320 WD40 WD40 repeats. 97.4 0.00026 5.6E-09 45.2 4.2 36 174-209 5-40 (40)
353 PF06977 SdiA-regulated: SdiA- 97.4 0.023 4.9E-07 54.2 18.8 202 174-427 14-247 (248)
354 PF00780 CNH: CNH domain; Int 97.4 0.15 3.2E-06 50.2 25.3 190 270-474 37-257 (275)
355 COG0823 TolB Periplasmic compo 97.3 0.014 2.9E-07 60.7 17.5 157 307-474 191-360 (425)
356 COG3391 Uncharacterized conser 97.3 0.14 3.1E-06 52.9 24.8 225 270-503 32-272 (381)
357 KOG4640 Anaphase-promoting com 97.3 0.0012 2.5E-08 68.4 9.0 97 307-410 19-116 (665)
358 PF04841 Vps16_N: Vps16, N-ter 97.3 0.23 4.9E-06 51.8 26.3 183 269-470 81-285 (410)
359 PF08553 VID27: VID27 cytoplas 97.2 0.023 4.9E-07 62.7 18.7 135 284-428 499-645 (794)
360 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.23 5E-06 46.3 22.8 100 279-378 63-163 (354)
361 KOG2395 Protein involved in va 97.0 0.014 2.9E-07 59.6 13.0 145 324-472 349-500 (644)
362 KOG4640 Anaphase-promoting com 96.9 0.0041 9E-08 64.5 9.0 92 267-360 19-115 (665)
363 PRK13616 lipoprotein LpqB; Pro 96.9 0.083 1.8E-06 57.4 19.1 186 266-464 347-560 (591)
364 cd00216 PQQ_DH Dehydrogenases 96.9 0.59 1.3E-05 50.1 25.6 155 280-438 111-327 (488)
365 KOG4441 Proteins containing BT 96.7 0.19 4.1E-06 54.7 20.1 195 271-474 325-548 (571)
366 smart00320 WD40 WD40 repeats. 96.6 0.0038 8.2E-08 39.4 4.5 36 260-295 4-40 (40)
367 COG3204 Uncharacterized protei 96.6 0.51 1.1E-05 45.2 19.4 165 265-430 82-263 (316)
368 PRK13616 lipoprotein LpqB; Pro 96.5 0.22 4.8E-06 54.2 19.3 142 271-426 399-564 (591)
369 COG3386 Gluconolactonase [Carb 96.5 1 2.2E-05 44.7 22.1 187 275-473 31-244 (307)
370 PF14727 PHTB1_N: PTHB1 N-term 96.5 1.4 2.9E-05 45.7 25.1 184 281-474 147-362 (418)
371 PF04053 Coatomer_WDAD: Coatom 96.4 0.23 5E-06 52.0 17.8 134 280-430 117-262 (443)
372 PF00780 CNH: CNH domain; Int 96.3 1.2 2.6E-05 43.7 24.7 138 279-430 7-165 (275)
373 PF02897 Peptidase_S9_N: Proly 96.3 1.7 3.7E-05 45.6 26.2 195 270-472 125-357 (414)
374 TIGR02604 Piru_Ver_Nterm putat 96.1 2 4.3E-05 44.2 22.9 99 269-369 72-202 (367)
375 KOG2395 Protein involved in va 96.1 0.11 2.3E-06 53.3 12.8 137 281-428 348-498 (644)
376 COG3204 Uncharacterized protei 95.9 1.7 3.6E-05 41.8 19.8 166 173-383 77-266 (316)
377 COG3490 Uncharacterized protei 95.9 0.55 1.2E-05 44.6 15.5 114 342-461 59-180 (366)
378 PF08596 Lgl_C: Lethal giant l 95.8 0.19 4E-06 51.9 13.5 119 352-472 3-173 (395)
379 PF12894 Apc4_WD40: Anaphase-p 95.7 0.036 7.9E-07 37.4 5.4 31 181-211 11-41 (47)
380 KOG3630 Nuclear pore complex, 95.7 0.095 2.1E-06 58.4 11.4 153 351-510 101-259 (1405)
381 PHA02713 hypothetical protein; 95.5 0.54 1.2E-05 51.2 16.8 185 278-474 303-535 (557)
382 PF05694 SBP56: 56kDa selenium 95.5 3.4 7.4E-05 42.3 22.9 153 278-431 139-343 (461)
383 COG3490 Uncharacterized protei 95.5 1.2 2.6E-05 42.3 16.3 184 188-428 120-346 (366)
384 KOG2444 WD40 repeat protein [G 95.4 0.057 1.2E-06 49.4 7.2 141 324-474 33-179 (238)
385 PF05096 Glu_cyclase_2: Glutam 95.2 3.1 6.7E-05 39.8 21.5 187 184-419 47-250 (264)
386 KOG2079 Vacuolar assembly/sort 95.1 0.44 9.5E-06 53.2 14.1 98 280-380 100-203 (1206)
387 PF12894 Apc4_WD40: Anaphase-p 95.1 0.084 1.8E-06 35.7 5.6 34 348-381 9-42 (47)
388 PF14583 Pectate_lyase22: Olig 95.0 4.7 0.0001 40.9 26.6 172 289-470 168-379 (386)
389 KOG1897 Damage-specific DNA bi 94.9 8.4 0.00018 43.3 28.5 158 308-474 448-615 (1096)
390 KOG2444 WD40 repeat protein [G 94.7 0.13 2.8E-06 47.1 7.5 58 281-339 116-177 (238)
391 TIGR03074 PQQ_membr_DH membran 94.6 8.7 0.00019 43.4 23.1 109 279-387 194-351 (764)
392 PF06433 Me-amine-dh_H: Methyl 94.6 5.4 0.00012 39.6 21.8 145 280-433 148-323 (342)
393 KOG3630 Nuclear pore complex, 94.6 0.49 1.1E-05 53.1 12.7 138 270-411 102-255 (1405)
394 PF14870 PSII_BNR: Photosynthe 94.5 5.5 0.00012 39.4 22.2 156 307-469 143-301 (302)
395 PF05096 Glu_cyclase_2: Glutam 94.4 4.8 0.00011 38.5 24.0 186 269-462 45-250 (264)
396 PF15390 DUF4613: Domain of un 94.4 2.6 5.7E-05 44.4 16.8 114 266-380 54-186 (671)
397 PF10647 Gmad1: Lipoprotein Lp 94.4 5.1 0.00011 38.7 21.2 147 270-420 25-185 (253)
398 KOG4441 Proteins containing BT 94.2 4.8 0.0001 44.0 19.6 183 281-474 287-501 (571)
399 PHA03098 kelch-like protein; P 94.2 2.6 5.6E-05 45.9 17.9 102 279-384 295-418 (534)
400 KOG2079 Vacuolar assembly/sort 94.1 0.31 6.6E-06 54.4 9.9 99 320-423 98-198 (1206)
401 PF14781 BBS2_N: Ciliary BBSom 94.1 2.4 5.2E-05 35.7 12.9 102 281-383 12-128 (136)
402 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.0 11 0.00023 40.9 26.2 54 332-385 272-338 (527)
403 PF15390 DUF4613: Domain of un 94.0 4.5 9.8E-05 42.7 17.4 152 267-430 18-186 (671)
404 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.9 11 0.00024 40.7 22.0 193 279-476 69-337 (527)
405 PF07995 GSDH: Glucose / Sorbo 93.9 8.1 0.00018 39.0 23.7 68 400-467 253-330 (331)
406 PF14870 PSII_BNR: Photosynthe 93.8 7.6 0.00016 38.4 26.2 189 270-474 63-262 (302)
407 PF10647 Gmad1: Lipoprotein Lp 93.8 6.9 0.00015 37.8 21.8 157 310-473 25-198 (253)
408 KOG1916 Nuclear protein, conta 93.6 0.028 6E-07 60.8 1.1 118 348-472 130-265 (1283)
409 PF12234 Rav1p_C: RAVE protein 93.5 3 6.5E-05 45.3 16.0 112 310-428 31-154 (631)
410 PF14761 HPS3_N: Hermansky-Pud 93.5 5.3 0.00012 36.8 15.3 144 322-471 29-213 (215)
411 PF03022 MRJP: Major royal jel 93.4 8.6 0.00019 37.9 21.2 166 290-460 35-253 (287)
412 PF05694 SBP56: 56kDa selenium 93.4 2 4.2E-05 44.0 13.4 133 287-419 220-393 (461)
413 PF12234 Rav1p_C: RAVE protein 93.1 3.1 6.7E-05 45.2 15.3 112 352-472 31-156 (631)
414 PF08728 CRT10: CRT10; InterP 93.1 6.1 0.00013 43.5 17.6 110 269-379 101-245 (717)
415 COG5276 Uncharacterized conser 93.0 9.1 0.0002 36.9 23.1 192 269-475 87-288 (370)
416 PF10313 DUF2415: Uncharacteri 92.9 0.34 7.4E-06 31.7 4.9 31 182-212 1-34 (43)
417 PF14727 PHTB1_N: PTHB1 N-term 92.9 8.6 0.00019 39.9 17.7 149 320-474 36-206 (418)
418 PRK10115 protease 2; Provision 92.9 19 0.00042 40.4 30.8 193 272-474 175-396 (686)
419 TIGR02604 Piru_Ver_Nterm putat 92.9 5.1 0.00011 41.2 16.4 148 309-461 14-202 (367)
420 COG5167 VID27 Protein involved 92.8 2 4.3E-05 44.3 12.5 148 320-473 478-633 (776)
421 PHA02713 hypothetical protein; 92.6 12 0.00026 40.9 19.6 93 290-384 273-379 (557)
422 PF14655 RAB3GAP2_N: Rab3 GTPa 92.5 15 0.00032 38.2 23.1 87 274-360 7-118 (415)
423 COG5276 Uncharacterized conser 92.2 12 0.00025 36.2 24.5 160 302-475 80-244 (370)
424 PHA02790 Kelch-like protein; P 91.4 14 0.00031 39.5 18.2 102 281-384 274-388 (480)
425 PHA03098 kelch-like protein; P 91.3 11 0.00024 41.1 17.7 103 280-384 344-468 (534)
426 PF10168 Nup88: Nuclear pore c 91.3 4.9 0.00011 44.9 14.7 82 350-431 84-180 (717)
427 TIGR03118 PEPCTERM_chp_1 conse 91.2 16 0.00034 35.7 19.1 202 270-474 24-281 (336)
428 PF10168 Nup88: Nuclear pore c 91.0 31 0.00068 38.7 23.0 72 268-340 84-180 (717)
429 PRK13684 Ycf48-like protein; P 90.3 15 0.00033 37.1 16.3 107 268-378 214-329 (334)
430 KOG2377 Uncharacterized conser 90.2 14 0.00031 37.8 15.1 123 180-345 65-191 (657)
431 PF10313 DUF2415: Uncharacteri 90.2 0.98 2.1E-05 29.6 4.8 32 309-340 1-34 (43)
432 KOG2280 Vacuolar assembly/sort 90.0 6.5 0.00014 42.7 13.4 197 269-474 44-248 (829)
433 PF07569 Hira: TUP1-like enhan 89.9 1.6 3.6E-05 41.0 8.3 71 357-429 17-94 (219)
434 TIGR03606 non_repeat_PQQ dehyd 89.6 30 0.00064 36.4 18.1 54 308-362 29-90 (454)
435 PF07569 Hira: TUP1-like enhan 89.3 3.8 8.3E-05 38.5 10.3 72 307-382 11-97 (219)
436 KOG1916 Nuclear protein, conta 89.1 0.26 5.7E-06 53.8 2.5 116 263-380 127-265 (1283)
437 COG5167 VID27 Protein involved 89.0 7.2 0.00016 40.4 12.3 138 281-430 482-632 (776)
438 PHA02790 Kelch-like protein; P 88.7 35 0.00076 36.6 18.4 100 281-385 321-428 (480)
439 PRK13684 Ycf48-like protein; P 88.2 31 0.00068 34.9 17.7 151 268-429 172-330 (334)
440 PF07995 GSDH: Glucose / Sorbo 87.4 10 0.00023 38.2 12.8 110 352-463 3-134 (331)
441 TIGR03548 mutarot_permut cycli 87.2 35 0.00075 34.3 17.9 105 278-384 72-198 (323)
442 PF08728 CRT10: CRT10; InterP 87.2 27 0.00059 38.6 16.2 118 353-471 103-245 (717)
443 PF14761 HPS3_N: Hermansky-Pud 86.0 29 0.00062 32.1 16.0 109 274-384 23-167 (215)
444 KOG3616 Selective LIM binding 85.6 14 0.00029 40.2 12.5 80 299-381 5-84 (1636)
445 KOG1898 Splicing factor 3b, su 85.2 77 0.0017 36.4 18.6 172 291-474 855-1050(1205)
446 PF13449 Phytase-like: Esteras 85.1 45 0.00098 33.6 17.8 147 309-459 20-231 (326)
447 PF12657 TFIIIC_delta: Transcr 84.6 10 0.00023 34.1 10.1 29 269-297 86-121 (173)
448 PF14655 RAB3GAP2_N: Rab3 GTPa 84.3 12 0.00026 38.7 11.5 46 169-214 295-340 (415)
449 KOG2377 Uncharacterized conser 83.5 25 0.00054 36.1 12.7 134 362-503 33-173 (657)
450 PF02333 Phytase: Phytase; In 83.5 56 0.0012 33.4 23.0 140 289-430 127-290 (381)
451 KOG1897 Damage-specific DNA bi 83.2 91 0.002 35.6 28.2 144 281-428 501-657 (1096)
452 KOG4499 Ca2+-binding protein R 82.3 44 0.00095 31.3 16.2 184 281-475 29-244 (310)
453 KOG1900 Nuclear pore complex, 82.2 13 0.00028 43.2 11.4 166 304-473 74-273 (1311)
454 KOG4499 Ca2+-binding protein R 82.2 44 0.00096 31.3 18.8 169 280-451 72-262 (310)
455 COG5290 IkappaB kinase complex 81.9 44 0.00095 36.9 14.4 97 351-454 247-348 (1243)
456 TIGR03074 PQQ_membr_DH membran 81.6 1E+02 0.0022 35.1 22.1 157 280-436 261-483 (764)
457 KOG4659 Uncharacterized conser 80.4 1.3E+02 0.0028 35.6 21.7 16 539-554 663-678 (1899)
458 PF10214 Rrn6: RNA polymerase 80.0 1.2E+02 0.0026 34.8 24.8 159 266-431 77-277 (765)
459 PLN00033 photosystem II stabil 80.0 79 0.0017 32.8 27.5 148 313-469 243-396 (398)
460 KOG2247 WD40 repeat-containing 79.8 0.24 5.1E-06 50.5 -2.6 138 180-365 33-174 (615)
461 TIGR03606 non_repeat_PQQ dehyd 79.7 85 0.0018 33.1 15.7 113 350-463 29-166 (454)
462 PF14781 BBS2_N: Ciliary BBSom 79.4 38 0.00082 28.8 12.8 119 185-343 2-129 (136)
463 KOG1983 Tomosyn and related SN 79.4 25 0.00054 41.1 12.9 32 181-212 35-66 (993)
464 COG4590 ABC-type uncharacteriz 79.3 11 0.00023 38.6 8.5 166 177-384 216-390 (733)
465 KOG3616 Selective LIM binding 79.0 72 0.0016 35.1 14.7 32 181-212 14-45 (1636)
466 KOG4460 Nuclear pore complex, 78.6 19 0.00042 37.6 10.2 27 182-208 104-130 (741)
467 KOG2247 WD40 repeat-containing 78.6 0.33 7.1E-06 49.5 -2.1 144 272-426 38-184 (615)
468 PF10214 Rrn6: RNA polymerase 78.0 1.3E+02 0.0029 34.3 22.5 120 259-382 133-278 (765)
469 KOG4460 Nuclear pore complex, 77.6 57 0.0012 34.3 13.1 27 268-294 103-130 (741)
470 KOG2280 Vacuolar assembly/sort 77.4 1.2E+02 0.0027 33.5 20.6 184 259-454 74-271 (829)
471 smart00036 CNH Domain found in 77.1 81 0.0018 31.3 25.3 200 267-475 41-273 (302)
472 KOG1983 Tomosyn and related SN 76.4 42 0.00091 39.4 13.6 114 348-474 33-146 (993)
473 PLN02193 nitrile-specifier pro 75.2 1.2E+02 0.0026 32.4 18.7 145 280-432 177-353 (470)
474 PF11635 Med16: Mediator compl 74.9 1.6E+02 0.0035 33.6 18.9 67 400-467 260-345 (753)
475 PF02333 Phytase: Phytase; In 74.3 1.1E+02 0.0024 31.4 18.2 149 320-473 67-238 (381)
476 PRK10115 protease 2; Provision 74.2 1.6E+02 0.0034 33.3 24.9 109 269-380 127-255 (686)
477 COG4590 ABC-type uncharacteriz 74.0 29 0.00063 35.6 9.9 161 307-474 219-388 (733)
478 COG3823 Glutamine cyclotransfe 73.7 75 0.0016 29.3 13.7 52 286-340 108-159 (262)
479 PRK13613 lipoprotein LpqB; Pro 73.2 72 0.0016 35.1 13.7 154 310-472 364-537 (599)
480 KOG1900 Nuclear pore complex, 72.8 48 0.001 38.9 12.4 71 308-382 178-274 (1311)
481 PF07250 Glyoxal_oxid_N: Glyox 72.1 53 0.0011 31.4 10.9 136 291-430 48-197 (243)
482 PF07676 PD40: WD40-like Beta 72.0 12 0.00026 23.7 4.7 30 179-208 6-38 (39)
483 PF12657 TFIIIC_delta: Transcr 71.5 21 0.00046 32.1 7.9 32 351-382 86-123 (173)
484 PLN00033 photosystem II stabil 71.1 1.4E+02 0.0029 31.1 30.1 108 353-470 241-354 (398)
485 PLN02153 epithiospecifier prot 68.9 1.4E+02 0.0029 30.3 23.8 103 280-385 87-230 (341)
486 COG5290 IkappaB kinase complex 68.1 51 0.0011 36.5 10.6 62 267-328 294-356 (1243)
487 TIGR03547 muta_rot_YjhT mutatr 68.0 1.4E+02 0.0031 30.2 22.4 41 331-371 168-210 (346)
488 COG3292 Predicted periplasmic 67.8 1.8E+02 0.0039 31.3 17.9 102 268-374 164-269 (671)
489 PF12768 Rax2: Cortical protei 67.4 1.2E+02 0.0026 29.8 12.5 89 289-378 16-121 (281)
490 KOG1896 mRNA cleavage and poly 67.0 83 0.0018 36.7 12.5 140 281-428 1048-1211(1366)
491 TIGR02171 Fb_sc_TIGR02171 Fibr 66.8 39 0.00085 38.3 9.9 84 329-418 327-417 (912)
492 TIGR02276 beta_rpt_yvtn 40-res 66.2 27 0.00058 22.3 5.6 39 320-358 2-41 (42)
493 PLN02153 epithiospecifier prot 66.1 1.5E+02 0.0033 29.9 22.0 104 278-384 32-171 (341)
494 COG3823 Glutamine cyclotransfe 65.4 1.1E+02 0.0025 28.2 14.8 100 281-383 58-161 (262)
495 COG4257 Vgb Streptogramin lyas 65.1 1.4E+02 0.003 28.9 16.1 192 312-511 65-260 (353)
496 PF10395 Utp8: Utp8 family; I 64.0 1.8E+02 0.0039 32.2 14.0 156 181-338 129-304 (670)
497 PF07676 PD40: WD40-like Beta 63.5 26 0.00056 22.1 5.0 28 400-427 9-38 (39)
498 TIGR02276 beta_rpt_yvtn 40-res 63.4 27 0.00059 22.2 5.3 36 281-316 6-41 (42)
499 PF11715 Nup160: Nucleoporin N 63.4 39 0.00084 37.0 9.5 117 167-305 132-256 (547)
500 PF11635 Med16: Mediator compl 63.2 2.8E+02 0.006 31.8 19.4 33 442-474 259-291 (753)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-60 Score=483.76 Aligned_cols=448 Identities=45% Similarity=0.816 Sum_probs=338.2
Q ss_pred chhHhhhcccccccccccccccccc-cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCC---------
Q 006909 154 NKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD--------- 223 (626)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~--------- 223 (626)
.++++++.++...++..++..|.+. +|.++|++|+||+||+|||+||.||.|+||.+.............
T Consensus 239 ~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~ 318 (712)
T KOG0283|consen 239 SRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNA 318 (712)
T ss_pred ceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhh
Confidence 6788899999999999999999999 999999999999999999999999999999987733321111110
Q ss_pred -CCCcc-C----CCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccC
Q 006909 224 -GGFGS-N----AKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG 297 (626)
Q Consensus 224 -~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~ 297 (626)
+.... . ...+.............+.++.+++.+..+|++.+.||.+.|.+|.|+.+++|+++|.|+||++|++.
T Consensus 319 ~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~ 398 (712)
T KOG0283|consen 319 NSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPG 398 (712)
T ss_pred ccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCC
Confidence 00000 0 01112222233333344788889999999999999999999999999999999999999999999999
Q ss_pred CCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEE
Q 006909 298 CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY 377 (626)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~ 377 (626)
...|++.|.|.+.|+|++|+|.|.++|++|+.||.||||++...+++.+.+...-|++++|.|+|++.++|+.+|.+++|
T Consensus 399 ~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY 478 (712)
T KOG0283|consen 399 RKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFY 478 (712)
T ss_pred CcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC--CcceeeeeecCCCCCeEEEEEcCCC
Q 006909 378 KASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG--VDVIHKFKGLPKSGSQMSASFTTTG 454 (626)
Q Consensus 378 d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~sp~g 454 (626)
+..+.+.... .+..+..++.....||+++|.|.....+++.+.|..|+|||+ ...+..|++...........|+.||
T Consensus 479 ~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg 558 (712)
T KOG0283|consen 479 DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG 558 (712)
T ss_pred EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC
Confidence 9998887666 555565555555589999999987778999999999999999 6888999998788888899999999
Q ss_pred CEEEEEeCCccEEEEECCCCC-CCCCCccCCccceeeeccCCcEEEEecCCCCcccc--cccCCCccccCccccccCCCC
Q 006909 455 KHIISIGDDCRVYVWNYDELC-FPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK--SLCSSSLRDCSQKWDNLETAP 531 (626)
Q Consensus 455 ~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~--~~~~~~~~~~~~~w~~~~~~~ 531 (626)
++|+++++|..||||+++... ...........+...|+......++.|........ .+.... ...
T Consensus 559 k~IVs~seDs~VYiW~~~~~~~~~~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~n~ss~~p~~~-----------~~~- 626 (712)
T KOG0283|consen 559 KHIVSASEDSWVYIWKNDSFNSEASHKKTKSIRSYEHFSSVDVSVAIPWPGFHAHNPSSNLPPLI-----------KAA- 626 (712)
T ss_pred CEEEEeecCceEEEEeCCCCccccccccccccccccccccccccccccccccccccccccCCCCc-----------ccc-
Confidence 999999999999999997652 12233344455667777778888888887665542 111100 000
Q ss_pred cccCCCcccCCccccCCCC--cccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccccc--ccccceEEEE
Q 006909 532 WIRDSERFSLGSWFSNDGP--CRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAI--SATWGLVIVT 607 (626)
Q Consensus 532 ~~~~~~~~~~~~~~s~dg~--~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~dg~~ivt 607 (626)
......+. ..++... -..+++|++.++..--.... .. +..........+.... +.+||.+|+|
T Consensus 627 -~~~~~~~~---~s~~~~~~~~~~s~t~~e~~~~~s~~~~~----~~-----~~~~~~~~S~~~~~~~~~~~~wg~vivT 693 (712)
T KOG0283|consen 627 -LRPVNEFK---LSSPMRSLNSRGSATWPEEKLLDSPGASA----SS-----RSSIKFLMSGCQRSSSSSPHAWGMVIVT 693 (712)
T ss_pred -cCcccccc---cCCccccccccccccCcccccccccCccc----cc-----ccccccccCCCccccccccCCCcceeee
Confidence 00000000 0111111 13456666554433211000 00 0000111122222211 3469999999
Q ss_pred ecCCceEeeeeecCccccC
Q 006909 608 AGCDGMIKTFHNYGLPIRL 626 (626)
Q Consensus 608 ~g~Dg~Irvw~~~g~p~~~ 626 (626)
|++||.||+++|||||+++
T Consensus 694 s~~~g~Ir~~~n~glp~~~ 712 (712)
T KOG0283|consen 694 STLDGQIRCFQNYGLPRRV 712 (712)
T ss_pred ccccceEEEEEecCCCCCC
Confidence 9999999999999999985
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-47 Score=353.11 Aligned_cols=330 Identities=24% Similarity=0.358 Sum_probs=272.8
Q ss_pred ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
-..+...+.||.++|.|++|+|+|++||||+.|.++|+||+.+
T Consensus 104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T------------------------------------- 146 (480)
T KOG0271|consen 104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT------------------------------------- 146 (480)
T ss_pred cceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC-------------------------------------
Confidence 3456677899999999999999999999999999999999998
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe-e-cCCCCeEEEEEeeC----CCC
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPI----DDN 322 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~-~-~~~~~v~~~~~~p~----~~~ 322 (626)
..|..+.++|...|.|++|+||| .|++|+.||+|++||..+|+++.. + +|..+|++++|.|. ...
T Consensus 147 --------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r 218 (480)
T KOG0271|consen 147 --------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR 218 (480)
T ss_pred --------CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc
Confidence 78899999999999999999999 899999999999999999887643 3 59999999999872 456
Q ss_pred EEEEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 323 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 323 ~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
+|++++.||.|+|||+..+.++ .+.+|..+|+|+.|--+| ++++|+.|++|++|+...+.+.. ..++|...
T Consensus 219 ~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r-------~lkGHahw 290 (480)
T KOG0271|consen 219 RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCR-------ELKGHAHW 290 (480)
T ss_pred ceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHH-------hhcccchh
Confidence 8999999999999999987765 478999999999997666 89999999999999998765432 13445567
Q ss_pred eEEEEEc-----------CCC------------------------CcEEEEEeCCCcEEEEeCCccee-eeeecCCCCCe
Q 006909 402 ITGIQFS-----------RDE------------------------SQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQ 445 (626)
Q Consensus 402 i~~l~~s-----------~~~------------------------~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~v 445 (626)
|+.++++ |.+ +..+++|++|.++.+|+.....+ .-+..+|..-|
T Consensus 291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV 370 (480)
T KOG0271|consen 291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV 370 (480)
T ss_pred eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence 7777766 222 24699999999999999654332 22334589999
Q ss_pred EEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCcccc
Q 006909 446 MSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWD 525 (626)
Q Consensus 446 ~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~ 525 (626)
+.+.||||+++||++|-|..|++|+-.++ .+++.
T Consensus 371 n~V~fSPd~r~IASaSFDkSVkLW~g~tG---------------------k~las------------------------- 404 (480)
T KOG0271|consen 371 NHVSFSPDGRYIASASFDKSVKLWDGRTG---------------------KFLAS------------------------- 404 (480)
T ss_pred eeEEECCCccEEEEeecccceeeeeCCCc---------------------chhhh-------------------------
Confidence 99999999999999999999999998764 22221
Q ss_pred ccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccc--ccccccce
Q 006909 526 NLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWGL 603 (626)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~dg~ 603 (626)
+++|-..|+.++||.|++++++++. |.+|++|++.+. ++......|...+- .+++ ||.
T Consensus 405 -------fRGHv~~VYqvawsaDsRLlVS~Sk-DsTLKvw~V~tk-----------Kl~~DLpGh~DEVf~vDwsp-DG~ 464 (480)
T KOG0271|consen 405 -------FRGHVAAVYQVAWSADSRLLVSGSK-DSTLKVWDVRTK-----------KLKQDLPGHADEVFAVDWSP-DGQ 464 (480)
T ss_pred -------hhhccceeEEEEeccCccEEEEcCC-CceEEEEEeeee-----------eecccCCCCCceEEEEEecC-CCc
Confidence 4556667888999999999999998 899999999987 33333333444443 4456 899
Q ss_pred EEEEecCCceEeeee
Q 006909 604 VIVTAGCDGMIKTFH 618 (626)
Q Consensus 604 ~ivt~g~Dg~Irvw~ 618 (626)
.+++||.|..+|+|.
T Consensus 465 rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 465 RVASGGKDKVLRLWR 479 (480)
T ss_pred eeecCCCceEEEeec
Confidence 999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-41 Score=319.47 Aligned_cols=280 Identities=20% Similarity=0.310 Sum_probs=246.6
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
|-+.+|..+.||+|++.|||||.+|.++||+..+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~---------------------------------------------~ 207 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ---------------------------------------------C 207 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCC---------------------------------------------c
Confidence 7889999999999999999999999999999987 3
Q ss_pred CCceeeccCccceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
..+++|.||+..|.++.|+|. + .++||+.||++++|++.+...+..+ +|...|..++|+| +|++|++++.|.+-+
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWR 286 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWR 286 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchh
Confidence 457899999999999999996 3 8999999999999999998888887 4889999999999 999999999999999
Q ss_pred EEeCCCCe-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909 335 IWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 335 iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
+||++++. +....+|...|.+++|+|||..+++|+.|..-+|||++++..... ..+|...|.++.|+|+| +
T Consensus 287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~-------L~gH~k~I~~V~fsPNG-y 358 (459)
T KOG0272|consen 287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF-------LAGHIKEILSVAFSPNG-Y 358 (459)
T ss_pred hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE-------ecccccceeeEeECCCc-e
Confidence 99999876 445789999999999999999999999999999999999987654 22345899999999998 8
Q ss_pred EEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeec
Q 006909 414 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 492 (626)
Q Consensus 414 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 492 (626)
.|++|+.|++++|||++.....+....|..-|+.+.|+| .|.+|+|++.|++++||.-.+..
T Consensus 359 ~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~----------------- 421 (459)
T KOG0272|consen 359 HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS----------------- 421 (459)
T ss_pred EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc-----------------
Confidence 999999999999999987666777778999999999998 78999999999999999977631
Q ss_pred cCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909 493 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD 566 (626)
Q Consensus 493 ~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd 566 (626)
+-+ .+.+|+.-|.++.+++||.+++++++ |.++++|.
T Consensus 422 -----------~~k-------------------------sLaGHe~kV~s~Dis~d~~~i~t~s~-DRT~KLW~ 458 (459)
T KOG0272|consen 422 -----------PLK-------------------------SLAGHEGKVISLDISPDSQAIATSSF-DRTIKLWR 458 (459)
T ss_pred -----------cch-------------------------hhcCCccceEEEEeccCCceEEEecc-Cceeeecc
Confidence 000 03455666777778888888888888 78888884
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-40 Score=306.55 Aligned_cols=251 Identities=22% Similarity=0.390 Sum_probs=216.9
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
.....+.++|...|.|++|+|||+.||+|+.||+|++||..++.
T Consensus 147 eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~------------------------------------ 190 (480)
T KOG0271|consen 147 ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ------------------------------------ 190 (480)
T ss_pred CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC------------------------------------
Confidence 34567889999999999999999999999999999999998853
Q ss_pred CccccccCCCceeeccCccceEEEEEcC------CCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCE
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSN------SNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~------~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~ 323 (626)
.....+.+|...|++++|.| ..+|++++.||+|+|||+..++++..+ +|+.+|+|+.|- ...+
T Consensus 191 --------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gl 260 (480)
T KOG0271|consen 191 --------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGL 260 (480)
T ss_pred --------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCce
Confidence 34577889999999999976 238999999999999999999998887 599999999996 4679
Q ss_pred EEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEe-----------eCCC-------------------------EEE
Q 006909 324 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYI-----------PDGK-------------------------GFI 366 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~s-----------p~g~-------------------------~l~ 366 (626)
+++||.|++|++|+...|.+.. +.+|...|+.++.+ |.++ .++
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 9999999999999998887654 77888899988776 3333 499
Q ss_pred EEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeE
Q 006909 367 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM 446 (626)
Q Consensus 367 ~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 446 (626)
+|+.|.++.+|+......+... ..+|..-|..+.||||+ +++++++.|..|++||.++....-...+|-+.|.
T Consensus 341 SgsDd~tlflW~p~~~kkpi~r------mtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VY 413 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITR------MTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVY 413 (480)
T ss_pred EecCCceEEEecccccccchhh------hhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcchhhhhhhccceeE
Confidence 9999999999997655543332 33456889999999998 8999999999999999887666555555999999
Q ss_pred EEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 447 SASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 447 ~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.++|+.|.++|++||.|.++++|++.+.
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEeeee
Confidence 9999999999999999999999999875
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2e-38 Score=307.41 Aligned_cols=411 Identities=19% Similarity=0.248 Sum_probs=305.4
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-------------cceeeeecCCCCCccCCCCCeeeec
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV-------------AASCKSFTDDGGFGSNAKEGKIKFG 238 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (626)
.....+.+|...++-.+|||.|-|+|+|...|+|||||.... ...-+.+..++..++...+++-+|+
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 345567789999999999999999999999999999998762 2233445555555555544443332
Q ss_pred CCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEE
Q 006909 239 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ 315 (626)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~ 315 (626)
. ++.++ .+..+.++.||...|+++.|-|.. +++||+.|++|.+|+-...+...+++ |...|.|+.
T Consensus 130 ~-------~F~~D-----SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR 197 (603)
T KOG0318|consen 130 H-------VFLWD-----SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR 197 (603)
T ss_pred E-------EEEec-----CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence 1 11111 255678899999999999999987 89999999999999877666666664 889999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe----ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEee
Q 006909 316 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF 391 (626)
Q Consensus 316 ~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~----~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 391 (626)
|+| +|.+|++++.||+|.+||-.+++.+.. ..|++.|.+++|+||++.+++++.|.+++|||+.+..+... +.+
T Consensus 198 ysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t-~~~ 275 (603)
T KOG0318|consen 198 YSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST-WPM 275 (603)
T ss_pred ECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE-eec
Confidence 999 999999999999999999999887653 36899999999999999999999999999999987654321 110
Q ss_pred c-------------------------------------cccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--
Q 006909 392 H-------------------------------------DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-- 432 (626)
Q Consensus 392 ~-------------------------------------~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-- 432 (626)
. ....+|...|+++..+|++ .+|++|+.||.|.-|+....
T Consensus 276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccc
Confidence 0 1134578899999999998 89999999999999974311
Q ss_pred -----------eeeeeecC-------------------------------------------------------------
Q 006909 433 -----------IHKFKGLP------------------------------------------------------------- 440 (626)
Q Consensus 433 -----------~~~~~~~~------------------------------------------------------------- 440 (626)
+..+....
T Consensus 355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~ 434 (603)
T KOG0318|consen 355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ 434 (603)
T ss_pred cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence 00000000
Q ss_pred -------CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC---CCCccCCccceeeeccCCcEEEEecCCCCcccc
Q 006909 441 -------KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP---SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK 510 (626)
Q Consensus 441 -------~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~ 510 (626)
-.-...+++++|++..++.|+.|+.|+||.+...... ........+++++++|++.++|++-......++
T Consensus 435 ~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 435 TKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred CcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence 0011235788999999999999999999999986321 222334456677777777777776665666666
Q ss_pred cccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccC
Q 006909 511 SLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNN 590 (626)
Q Consensus 511 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 590 (626)
++.+... ....| .-|...+..++|||+..++|+++- |..|.||++.... ........|
T Consensus 515 d~~s~~~--~~~~w---------~FHtakI~~~aWsP~n~~vATGSl-Dt~Viiysv~kP~----------~~i~iknAH 572 (603)
T KOG0318|consen 515 DVASREV--KTNRW---------AFHTAKINCVAWSPNNKLVATGSL-DTNVIIYSVKKPA----------KHIIIKNAH 572 (603)
T ss_pred EcccCce--eccee---------eeeeeeEEEEEeCCCceEEEeccc-cceEEEEEccChh----------hheEecccc
Confidence 6555432 11111 124556899999999999999999 8999999998762 222333445
Q ss_pred CccccccccccceEEEEecCCceEeeeee
Q 006909 591 VDDVRAISATWGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 591 ~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~ 619 (626)
..++..+.-.|...+||+|.|..||+|++
T Consensus 573 ~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 573 LGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred ccCceeEEEecCceEEeccCcceeEEecc
Confidence 55555555557889999999999999986
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.1e-39 Score=303.95 Aligned_cols=249 Identities=23% Similarity=0.390 Sum_probs=224.6
Q ss_pred cccccccccccccCcEEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909 169 TALYTSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 246 (626)
Q Consensus 169 ~~~~~~~~l~~H~~~V~~l~fspd--g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (626)
+.....++|.||++.|.++.|+|. +..||||+.||++++|++.+
T Consensus 205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~---------------------------------- 250 (459)
T KOG0272|consen 205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ---------------------------------- 250 (459)
T ss_pred CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC----------------------------------
Confidence 455788899999999999999997 56999999999999999987
Q ss_pred eecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEE
Q 006909 247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF 324 (626)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l 324 (626)
..++..+.+|...|..++|+|+| +|+|++.|.+-++||++++..+... +|...|.+++|+| +|.++
T Consensus 251 -----------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~ 318 (459)
T KOG0272|consen 251 -----------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLA 318 (459)
T ss_pred -----------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCcee
Confidence 57899999999999999999999 9999999999999999998776655 5999999999999 99999
Q ss_pred EEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 325 ISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
++|+.|..-+|||+++++.+ .+.+|..+|.+++|+|+|..|++|+.|++++|||++.... ...+ +.|.+-|+
T Consensus 319 ~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~i------pAH~nlVS 391 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTI------PAHSNLVS 391 (459)
T ss_pred eccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-ceec------ccccchhh
Confidence 99999999999999998865 5778999999999999999999999999999999998766 3233 34458999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
.+.|+|+.+++|++++.|++++||...+....-...+|.+.|.++.+++++.+|++++.|+++++|.
T Consensus 392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 392 QVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred heEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999997679999999999999999886555555556999999999999999999999999999995
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=278.61 Aligned_cols=285 Identities=20% Similarity=0.336 Sum_probs=235.5
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcc-----------eeeeecCCCCCccCCCCCee-eec
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA-----------SCKSFTDDGGFGSNAKEGKI-KFG 238 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~ 238 (626)
+...++|+||.+.|.+|.|++|.++|++++.||.+.|||.-+... ..-+|+|.+.+++.....+. .++
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 344588999999999999999999999999999999999877544 23356676666543332222 221
Q ss_pred CCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEe
Q 006909 239 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN 317 (626)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~ 317 (626)
....... .-.....+.+.+|++.+.|+.|-+|+.|+|+|.|.+..+||+++++.+..|. |.+.|.++.+.
T Consensus 125 ~ls~~d~---------~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 125 PLSTRDA---------EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLS 195 (343)
T ss_pred ecccccc---------cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecC
Confidence 1111100 0001335678999999999999999999999999999999999999999994 99999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc
Q 006909 318 PIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 396 (626)
Q Consensus 318 p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 396 (626)
|.+++.|++|+-|++.++||++.+..++ +.+|...|++++|.|+|..+++|+.|+++++||++..+.... .. ..
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~-ys----~~ 270 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV-YS----HD 270 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee-ec----cC
Confidence 9999999999999999999999987665 789999999999999999999999999999999998765332 11 12
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
....+|++++||..| ++|++|..|.++.+||.-+....-...+|...|.++..+|||.-+++||.|.+++||.
T Consensus 271 ~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 271 SIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 224789999999998 8999999999999999876666666666999999999999999999999999999994
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-38 Score=291.08 Aligned_cols=360 Identities=19% Similarity=0.317 Sum_probs=286.8
Q ss_pred hccccccceeeeeeccc--cccccccccccCCC-Ccc--cccChhhHHHHHHHHHHhhcc--ccchhccccCCCCCCCCc
Q 006909 80 LEQDQMNECVVTLEGES--NGFSQSVDKFENPF-PEC--KGVNIKKVKKLWKRIISMKKR--NVETCMSEKRKPNSEKPK 152 (626)
Q Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 152 (626)
|.++|+++.++.+..+. ++..++...+-.+. ..+ ...+...++++|....++||+ .++...++...+......
T Consensus 5 ~~~~~~~ei~~aiadl~g~n~~~es~~i~~~~~~~~~~~~~~~g~ll~kkwtSv~rlqKki~~Les~l~~~~~el~~g~p 84 (406)
T KOG0295|consen 5 LSERQRDEINMAIADLSGSNGYSESDRIFHKEASLATEMRKKDGGLLEKKWTSVDRLQKKIRELESKLDETGDELIAGDP 84 (406)
T ss_pred ecccchHHHHHHHHhhhccccccccceeEeecCCCcccccccccceeeccccccchhHHHHHHHHhhhcccccccccCCC
Confidence 56788888888887774 34444444444433 333 334568999999999999987 344444443322221111
Q ss_pred cchhHhhhcccccccccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCC
Q 006909 153 ANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 232 (626)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 232 (626)
....+....+.+++.+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+
T Consensus 85 -----t~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~t-------------------- 139 (406)
T KOG0295|consen 85 -----TGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTET-------------------- 139 (406)
T ss_pred -----CcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccc--------------------
Confidence 1122333446788888999999999999999999999999999999999999998
Q ss_pred CeeeecCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-CeeeEee-cCCC
Q 006909 233 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVF-DHHN 309 (626)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-~~~~~~~-~~~~ 309 (626)
++....+.||+..|.+|+|+..| +|++++.|-.+++||..+ .++++.. +|..
T Consensus 140 -------------------------g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 140 -------------------------GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH 194 (406)
T ss_pred -------------------------hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence 44578899999999999999988 899999999999999976 4555544 6888
Q ss_pred CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeE
Q 006909 310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 388 (626)
Q Consensus 310 ~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 388 (626)
.|.++.|-| .++++++++.|.+|+.|++.++-++. +.+|...|..+..+.||..+++++.|.++++|-+.+.+....
T Consensus 195 ~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~- 272 (406)
T KOG0295|consen 195 GVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE- 272 (406)
T ss_pred ceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh-
Confidence 999999999 89999999999999999999988765 778899999999999999999999999999999988865432
Q ss_pred EeeccccccCCCCeEEEEEcCC--------------CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC
Q 006909 389 VDFHDRKKTSGNKITGIQFSRD--------------ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 454 (626)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~s~~--------------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g 454 (626)
.+.|..+|.+++|.|. +.+++.+++.|++|++||+..+...+...+|..+|..++|+|.|
T Consensus 273 ------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G 346 (406)
T KOG0295|consen 273 ------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG 346 (406)
T ss_pred ------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC
Confidence 3345578899988663 23699999999999999999998888888899999999999999
Q ss_pred CEEEEEeCCccEEEEECCCCC-CCCCCccCCccceeeeccCCcE
Q 006909 455 KHIISIGDDCRVYVWNYDELC-FPSSKQKNSVRSCEHFFSEGVS 497 (626)
Q Consensus 455 ~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~g~~ 497 (626)
+||+++.+|+++++||+++.. ............++.|+.+..+
T Consensus 347 kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~ 390 (406)
T KOG0295|consen 347 KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPY 390 (406)
T ss_pred eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCce
Confidence 999999999999999999873 3333334445566666665544
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-36 Score=270.64 Aligned_cols=293 Identities=16% Similarity=0.273 Sum_probs=237.9
Q ss_pred ccccccccccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
.+..+|++|++.|+.++..+.+ ..|++++.|.++.+|++......
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~---------------------------------- 51 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK---------------------------------- 51 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------------------
Confidence 4456789999999999999874 58999999999999999863110
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEe
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
-+.+++.+.||...|..++.++++ +.++++.|+++++||+.+++..+.| +|...|.+++|+| +...+++|+
T Consensus 52 ------~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGS 124 (315)
T KOG0279|consen 52 ------YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGS 124 (315)
T ss_pred ------cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCC
Confidence 156788999999999999999998 8899999999999999999988888 5999999999999 999999999
Q ss_pred CCCcEEEEeCCCCeEEEeccC--CCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909 329 IDGKVRIWGVCEKRVVDWADV--RDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~~~~~--~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 404 (626)
.|.+|++|++.+......... ++.|+|+.|+|+ ..+|+.++.|+++++||+++.+.... ..+|.+.++.
T Consensus 125 rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~-------~~gh~~~v~t 197 (315)
T KOG0279|consen 125 RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT-------FIGHSGYVNT 197 (315)
T ss_pred CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc-------cccccccEEE
Confidence 999999999998877766554 789999999998 67999999999999999998765432 3445689999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCC
Q 006909 405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS 484 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 484 (626)
+++|||| .++++|+.||.+.+||+++....+.. .+...|.+++|+|+.-+|+.+. +..|+|||+++...........
T Consensus 198 ~~vSpDG-slcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 198 VTVSPDG-SLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred EEECCCC-CEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccc
Confidence 9999998 69999999999999999987775544 4788999999999877776665 5569999999874332222221
Q ss_pred ccceeeeccCCcEEEEecCCCCcccccccCCC
Q 006909 485 VRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS 516 (626)
Q Consensus 485 ~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~ 516 (626)
.-.. .-..+-..+.++|+++|..|+.--.+.
T Consensus 275 ~g~s-~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 275 IGPS-SKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred cccc-cccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 1110 001123457788888888887654443
No 10
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=286.77 Aligned_cols=316 Identities=21% Similarity=0.373 Sum_probs=257.7
Q ss_pred ccccccccccccCCCCcccccChhhHHHHHHHHHHhhccccchhccccCCCCCCCCccchhHhhhccccccccccccccc
Q 006909 96 SNGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQ 175 (626)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (626)
...+...+++++.++++..++|+++++.|.++.+..|+...--.++- ..+...++........+.+..+
T Consensus 150 ~n~R~~ll~elskyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsl-----------dsvsll~Dh~c~~~qip~qt~q 218 (519)
T KOG0293|consen 150 NNERDKLLDELSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSL-----------DSVSLLSDHFCGRLQIPSQTWQ 218 (519)
T ss_pred chhHHHHHHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhccc-----------chhhhhhhcccCcccCCchhhh
Confidence 44667779999999999999999999999999999887643221110 0122222222222334567788
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
.|..|++.|+-+.||++|+|||||+.|.+..||.+.....
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~---------------------------------------- 258 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH---------------------------------------- 258 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----------------------------------------
Confidence 9999999999999999999999999999999999875211
Q ss_pred ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCC--CCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
-+..+++.+|..+|..+.||||. +|++|+.|..+.+||+.+|.+...+.+. ..+.+++|.| |+..+++|+.|++
T Consensus 259 --~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~ 335 (519)
T KOG0293|consen 259 --FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRT 335 (519)
T ss_pred --eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCc
Confidence 23478899999999999999987 9999999999999999999999988754 7899999999 9999999999999
Q ss_pred EEEEeCCCCeEEEeccCC-CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 333 VRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 333 v~iwd~~~~~~~~~~~~~-~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
+..||+.+.....+.+.+ ..|.+++..+||+++++.+.|..|++|+..+..... .+. ...+|++++.|.++
T Consensus 336 i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lis-------e~~~its~~iS~d~ 407 (519)
T KOG0293|consen 336 IIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-LIS-------EEQPITSFSISKDG 407 (519)
T ss_pred EEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-ccc-------ccCceeEEEEcCCC
Confidence 999999988877777665 459999999999999999999999999987543321 111 13789999999997
Q ss_pred CcEEEEEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCC
Q 006909 412 SQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 412 ~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+++++.-.+..|++||+.+ .+..+.++.....+..-+|.- +..++++||+|+.||||+..++
T Consensus 408 -k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 408 -KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred -cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence 7899999999999999885 445566665666777778864 5589999999999999999876
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-35 Score=294.34 Aligned_cols=377 Identities=19% Similarity=0.268 Sum_probs=297.3
Q ss_pred cccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909 167 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 246 (626)
Q Consensus 167 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (626)
++.++.+.+++.+|-+.|+++.|+.|.++|++|+.|.+++||.+...+
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k-------------------------------- 178 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK-------------------------------- 178 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc--------------------------------
Confidence 678888999999999999999999999999999999999999997621
Q ss_pred eecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-----------------------Cee-
Q 006909 247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----------------------NQC- 301 (626)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-----------------------~~~- 301 (626)
+-....+.+|...|.+.-|..+. .+++.+.||.+.+|.... ++.
T Consensus 179 -----------~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek 247 (893)
T KOG0291|consen 179 -----------NLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK 247 (893)
T ss_pred -----------ccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence 12256778999999999999876 899999999999997650 110
Q ss_pred --------eEe--e-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCC-CCeEEEEEeeCCCEEEEEe
Q 006909 302 --------LNV--F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGS 369 (626)
Q Consensus 302 --------~~~--~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~i~~i~~sp~g~~l~~g~ 369 (626)
... + .....|++.+|++ .-+.|++|-..|...+|.+..-.++...... ..|..++|+..|.+|+.|+
T Consensus 248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~ 326 (893)
T KOG0291|consen 248 THKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC 326 (893)
T ss_pred hcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC
Confidence 001 1 1336899999999 8899999999999999999998888765554 7899999999999999988
Q ss_pred cC-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEE
Q 006909 370 IT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSA 448 (626)
Q Consensus 370 ~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 448 (626)
.. |.+-+|+........+ ..+|...+++++++||| +++++|+.||+|+|||........+...|...|+.+
T Consensus 327 ~klgQLlVweWqsEsYVlK-------QQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v 398 (893)
T KOG0291|consen 327 SKLGQLLVWEWQSESYVLK-------QQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAV 398 (893)
T ss_pred CccceEEEEEeeccceeee-------ccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEE
Confidence 75 8999999987765443 34456899999999998 899999999999999999866666666699999999
Q ss_pred EEcCCCCEEEEEeCCccEEEEECCCCCC--CCCCccCCccceeeeccCCcEEEEecCCCC--cccccccCCCccccCccc
Q 006909 449 SFTTTGKHIISIGDDCRVYVWNYDELCF--PSSKQKNSVRSCEHFFSEGVSVAVQWPGIG--TEQKSLCSSSLRDCSQKW 524 (626)
Q Consensus 449 ~~sp~g~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~~~~g~~~av~~s~~~--~~l~~~~~~~~~~~~~~w 524 (626)
.|+..|+.|++.+.||+|+.||+..... ..........+|++.-|.|.++.++ ..+. ..+|++..+.+
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG-~~d~F~IfvWS~qTGql------- 470 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG-AQDSFEIFVWSVQTGQL------- 470 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee-ccceEEEEEEEeecCee-------
Confidence 9999999999999999999999987521 2222333445677777777664443 2222 23333333211
Q ss_pred cccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceE
Q 006909 525 DNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLV 604 (626)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 604 (626)
.-.+.+|+.+|.+++|+|+|..|++++| |.+|++||+-... . ..+.+-..+.....+++| ||+-
T Consensus 471 -----lDiLsGHEgPVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s~-~--------~vEtl~i~sdvl~vsfrP-dG~e 534 (893)
T KOG0291|consen 471 -----LDILSGHEGPVSGLSFSPDGSLLASGSW-DKTVRIWDIFSSS-G--------TVETLEIRSDVLAVSFRP-DGKE 534 (893)
T ss_pred -----eehhcCCCCcceeeEEccccCeEEeccc-cceEEEEEeeccC-c--------eeeeEeeccceeEEEEcC-CCCe
Confidence 1136789999999999999999999999 8999999987541 1 112223344444467777 8999
Q ss_pred EEEecCCceEeeeee
Q 006909 605 IVTAGCDGMIKTFHN 619 (626)
Q Consensus 605 ivt~g~Dg~Irvw~~ 619 (626)
|+.+..||.|.+|+.
T Consensus 535 laVaTldgqItf~d~ 549 (893)
T KOG0291|consen 535 LAVATLDGQITFFDI 549 (893)
T ss_pred EEEEEecceEEEEEh
Confidence 999999999999985
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-35 Score=297.85 Aligned_cols=408 Identities=18% Similarity=0.239 Sum_probs=302.2
Q ss_pred cccccccccccc-ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCccee-----------eeecCCCCC---ccCCCC
Q 006909 168 FTALYTSQEIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-----------KSFTDDGGF---GSNAKE 232 (626)
Q Consensus 168 ~~~~~~~~~l~~-H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~-----------~~~~~~~~~---~~~~~~ 232 (626)
++.-.+.+.+++ |+++|.-|+|+|.|..||+|+.||.++|||+..+.+.. ..|.+.... .....+
T Consensus 91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 344466777788 99999999999999999999999999999998765432 222222221 111222
Q ss_pred CeeeecCCCCCCceeecCCcccccc--CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec---
Q 006909 233 GKIKFGKKKSSHVPVVIPDEVFQIE--ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--- 306 (626)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--- 306 (626)
+.++ +|++. ..+++.+..|.+.|++++|++++ .+++++.|..+.|||+.+.++.++..
T Consensus 171 ~~v~----------------vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye 234 (775)
T KOG0319|consen 171 GTVR----------------VWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE 234 (775)
T ss_pred ceEE----------------EEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhh
Confidence 2222 23332 12477888999999999999987 89999999999999974433222211
Q ss_pred --------------------------------------------------------------------------------
Q 006909 307 -------------------------------------------------------------------------------- 306 (626)
Q Consensus 307 -------------------------------------------------------------------------------- 306 (626)
T Consensus 235 ~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 235 SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence
Q ss_pred -------CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEc
Q 006909 307 -------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 379 (626)
Q Consensus 307 -------~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~ 379 (626)
.++.|..++|--...++++.+++.+.+|+|++.+..+.-+.+|...|.+++...+|.+|++|+.|.++++|.+
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL 394 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence 2223444554322567777888888888887777777778899999999997778899999999999999999
Q ss_pred CCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-------ce--eeeeecCCCCCeEEEEE
Q 006909 380 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-------VI--HKFKGLPKSGSQMSASF 450 (626)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-------~~--~~~~~~~~~~~v~~~~~ 450 (626)
+++..... ......+|.+.|.+++++..+..+|++++.|+++++|++.. .. ..+....|...|+++++
T Consensus 395 ~~~~~~~~---~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 395 NNNCSKSL---CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred cCCcchhh---hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 55443222 22234567799999999998888999999999999999764 11 11233568899999999
Q ss_pred cCCCCEEEEEeCCccEEEEECCCCC--CCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccC
Q 006909 451 TTTGKHIISIGDDCRVYVWNYDELC--FPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE 528 (626)
Q Consensus 451 sp~g~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~ 528 (626)
+|+.++|+|||.|.+.+||+++... .....|... .-|+.|+|....+|.+-.+....+|.+.. .+
T Consensus 472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG-vw~V~Fs~~dq~laT~SgD~TvKIW~is~------------fS 538 (775)
T KOG0319|consen 472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG-VWCVSFSKNDQLLATCSGDKTVKIWSIST------------FS 538 (775)
T ss_pred cCCCceEEecccccceeeecccCceEEEEeeCCccc-eEEEEeccccceeEeccCCceEEEEEecc------------ce
Confidence 9999999999999999999999652 233444443 34557777777766665555555565544 23
Q ss_pred CCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccc-cceEEEE
Q 006909 529 TAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISAT-WGLVIVT 607 (626)
Q Consensus 529 ~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~ivt 607 (626)
....+.+|...|....|-.+|+.++|++. +|.|++|++.++ .+......|...+-+++.. ...+++|
T Consensus 539 ClkT~eGH~~aVlra~F~~~~~qliS~~a-dGliKlWnikt~-----------eC~~tlD~H~DrvWaL~~~~~~~~~~t 606 (775)
T KOG0319|consen 539 CLKTFEGHTSAVLRASFIRNGKQLISAGA-DGLIKLWNIKTN-----------ECEMTLDAHNDRVWALSVSPLLDMFVT 606 (775)
T ss_pred eeeeecCccceeEeeeeeeCCcEEEeccC-CCcEEEEeccch-----------hhhhhhhhccceeEEEeecCccceeEe
Confidence 44557889999999999999999999887 899999999998 6667777777777665533 6779999
Q ss_pred ecCCceEeeeee
Q 006909 608 AGCDGMIKTFHN 619 (626)
Q Consensus 608 ~g~Dg~Irvw~~ 619 (626)
||.||.|.+|+=
T Consensus 607 gg~Dg~i~~wkD 618 (775)
T KOG0319|consen 607 GGGDGRIIFWKD 618 (775)
T ss_pred cCCCeEEEEeec
Confidence 999999999973
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-34 Score=259.50 Aligned_cols=246 Identities=20% Similarity=0.395 Sum_probs=206.5
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
...+.|+||...|..+..++||++.++++.|+++++||+.+
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~--------------------------------------- 94 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT--------------------------------------- 94 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC---------------------------------------
Confidence 34677889999999999999999999999999999999998
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCC-CCEEEEE
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID-DNYFISG 327 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~-~~~l~s~ 327 (626)
+++.+.|.||...|.+++|++++ .+++|+.|++|++|++.......... +.+.|+|+.|+|.. ..+|+++
T Consensus 95 ------g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~ 168 (315)
T KOG0279|consen 95 ------GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA 168 (315)
T ss_pred ------CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence 45678899999999999999987 99999999999999998665554444 37899999999932 6799999
Q ss_pred eCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 328 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
+.|++|++||+++.++.. +.+|.+.++.+.++|||...++|+.||.+.+||++..+.... + .+...|.+++
T Consensus 169 s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys-l-------~a~~~v~sl~ 240 (315)
T KOG0279|consen 169 SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS-L-------EAFDIVNSLC 240 (315)
T ss_pred cCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe-c-------cCCCeEeeEE
Confidence 999999999999988764 778999999999999999999999999999999998876322 1 2247899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCcceeee--e----ec---CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 407 FSRDESQRIMITSEDSKLRILDGVDVIHKF--K----GL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~----~~---~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
|+|+. +.+++..+..|+|||+....... . +. .......+++|+++|..|++|-.|+.|++|.+.
T Consensus 241 fspnr--ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 241 FSPNR--YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ecCCc--eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99984 66677777789999976432221 1 11 112234678999999999999999999999875
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.2e-34 Score=250.64 Aligned_cols=259 Identities=20% Similarity=0.381 Sum_probs=223.7
Q ss_pred ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
.-.+.++++-..+.|+.+...||++.||+|+. -.||+||+.+..
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n----------------------------------- 72 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN----------------------------------- 72 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC-----------------------------------
Confidence 34566778777889999999999999999986 469999998742
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
..|+.++.+|+..|+.+.|..+| .+++||.||+++|||++...+.+.+.|..+|+++..+| +...|++|.
T Consensus 73 --------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~d 143 (311)
T KOG0315|consen 73 --------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGD 143 (311)
T ss_pred --------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeec
Confidence 35789999999999999999988 89999999999999999999999999999999999999 888999999
Q ss_pred CCCcEEEEeCCCCeEEE--eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 329 IDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
.+|.|++||+....+.. .......|.++...|||..++.+...|++++|++-+...... +....+.+.|...+..+.
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~-l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE-LEPVHKFQAHNGHILRCL 222 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc-ceEhhheecccceEEEEE
Confidence 99999999998875443 344557899999999999999999999999999987554333 223334667789999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 407 FSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
+|||+ ++|++++.|.+++||++.+. ........|..++..++||.||+||++|+.|+.+++|++..+.
T Consensus 223 lSPd~-k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 223 LSPDV-KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ECCCC-cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 99997 89999999999999998866 3333445588899999999999999999999999999999874
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.9e-35 Score=284.53 Aligned_cols=276 Identities=23% Similarity=0.455 Sum_probs=234.4
Q ss_pred ccccccccccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
+-.+..++.||+..|+++.|.| .+.+|++|+.|+.|+||++-.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~------------------------------------ 246 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD------------------------------------ 246 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec------------------------------------
Confidence 4456778899999999999999 899999999999999999976
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
+..+++++.||..+|.+++|+++| .++|+|.|+.|++||+++|+++..|.....++|+.|+|.+.+.|++|
T Consensus 247 --------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G 318 (503)
T KOG0282|consen 247 --------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG 318 (503)
T ss_pred --------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe
Confidence 256789999999999999999998 89999999999999999999999999999999999999444999999
Q ss_pred eCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 328 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
+.|+.|+.||+++++++. ...|-+.|..+.|-++|+++++.+.|++++||+.+..-......... .....++.
T Consensus 319 ~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~------~hsmP~~~ 392 (503)
T KOG0282|consen 319 GSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE------MHTMPCLT 392 (503)
T ss_pred cCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh------hccCccee
Confidence 999999999999999876 45667899999999999999999999999999988664432222211 24677899
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCC-----cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909 407 FSRDESQRIMITSEDSKLRILDGV-----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 481 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 481 (626)
.+|++ .++++-+.|+.|.++.+. +....++++.-.+.-..+.|||||.+|++|+.||.+.+||..+-......
T Consensus 393 ~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l- 470 (503)
T KOG0282|consen 393 LHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL- 470 (503)
T ss_pred cCCCC-CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc-
Confidence 99998 799999999999999865 45566777767778889999999999999999999999999875222111
Q ss_pred cCCccceeeeccCCcEEEEecCCCC
Q 006909 482 KNSVRSCEHFFSEGVSVAVQWPGIG 506 (626)
Q Consensus 482 ~~~~~~~~~~~~~g~~~av~~s~~~ 506 (626)
. .+++..+.+.|.|..
T Consensus 471 --------k-ah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 471 --------K-AHDQPCIGVDWHPVE 486 (503)
T ss_pred --------c-cCCcceEEEEecCCC
Confidence 1 125677788888774
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5e-34 Score=259.12 Aligned_cols=248 Identities=27% Similarity=0.472 Sum_probs=217.5
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
..+.+|++.|+.++|+|+|.+|||||.|..|.+|++..
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g------------------------------------------ 78 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG------------------------------------------ 78 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc------------------------------------------
Confidence 34679999999999999999999999999999999765
Q ss_pred cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
+.+....+.+|.+.|..+.|.+++ .+++++.|++|+.||+++|++++.+. |...|+.+.-+.....++.+|+.|++
T Consensus 79 --dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t 156 (338)
T KOG0265|consen 79 --DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT 156 (338)
T ss_pred --cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCce
Confidence 134456777999999999999987 99999999999999999999999986 88889998866656678889999999
Q ss_pred EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 333 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
+++||++++..++....+.+++++.|...+..+.+|+-|+.|++||++.+..... ..+|.++|+.+..+|+|
T Consensus 157 ~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~-------lsGh~DtIt~lsls~~g- 228 (338)
T KOG0265|consen 157 LKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT-------LSGHADTITGLSLSRYG- 228 (338)
T ss_pred EEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE-------eecccCceeeEEeccCC-
Confidence 9999999999998888899999999999999999999999999999987775432 33456899999999998
Q ss_pred cEEEEEeCCCcEEEEeCC------cceeeeeecCCC--CCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 413 QRIMITSEDSKLRILDGV------DVIHKFKGLPKS--GSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 413 ~~l~~~s~dg~i~iwd~~------~~~~~~~~~~~~--~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.++++-+.|.++++||.+ .++..+.++.|. .....++|+|+++.+.+|+.|..+++||....
T Consensus 229 s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 229 SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 799999999999999976 346667775554 34567899999999999999999999998874
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.6e-33 Score=253.45 Aligned_cols=287 Identities=15% Similarity=0.241 Sum_probs=234.6
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
...++|+||.+.|.++.|+++. +|+++|.||.+.|||.-+....+.+. ...+|..++|+| .++++++|+.|+...||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEE
Confidence 3458899999999999999987 99999999999999998888877776 667999999999 99999999999999999
Q ss_pred eCCCC--e-----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 337 GVCEK--R-----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 337 d~~~~--~-----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
++.+. + ...+.+|.+.+.++.|-+|+ .|++++.|.++.+||+++++.... + .+|.+.|.++.++|
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~---f----~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQV---F----HGHTGDVMSLSLSP 196 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEE---e----cCCcccEEEEecCC
Confidence 99754 1 23478999999999998754 799999999999999998876432 2 34579999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcccee
Q 006909 410 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 489 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 489 (626)
..++.+++|+.|+..++||++..........|...|+++.|.|+|.-+++|++|++.++||+............
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~------ 270 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD------ 270 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC------
Confidence 44589999999999999999976666566669999999999999999999999999999999975322211111
Q ss_pred eeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCC--cccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909 490 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP--WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD 566 (626)
Q Consensus 490 ~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd 566 (626)
+....+..++||..|.+|+.-.. +....+|+.+.... .+.+|+..|..+..+|||..+++++| |..|+||.
T Consensus 271 --~~~~gitSv~FS~SGRlLfagy~---d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW-Ds~lriW~ 343 (343)
T KOG0286|consen 271 --SIICGITSVAFSKSGRLLFAGYD---DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW-DSTLRIWA 343 (343)
T ss_pred --cccCCceeEEEcccccEEEeeec---CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch-hHheeecC
Confidence 01122445666666666655322 24456777776654 56789999999999999999999999 89999994
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=247.52 Aligned_cols=271 Identities=19% Similarity=0.312 Sum_probs=223.2
Q ss_pred CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceEE
Q 006909 194 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD 273 (626)
Q Consensus 194 ~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 273 (626)
-+|||+|.|.+||+|...+| .+..+++...+.|+.
T Consensus 11 viLvsA~YDhTIRfWqa~tG---------------------------------------------~C~rTiqh~dsqVNr 45 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG---------------------------------------------ICSRTIQHPDSQVNR 45 (311)
T ss_pred eEEEeccCcceeeeeehhcC---------------------------------------------eEEEEEecCccceee
Confidence 48999999999999999984 446677767789999
Q ss_pred EEEcCCCeEEEEeCCCcEEEeccCCCe--eeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCC
Q 006909 274 LAWSNSNYLLSCSMDKTVRMWQVGCNQ--CLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 350 (626)
Q Consensus 274 l~~s~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 350 (626)
+...|++..+++.....|++||++++. ++.+|. |...|+++.|.. +|+.+++|+.||+++|||++.-.+.+...+.
T Consensus 46 LeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~ 124 (311)
T KOG0315|consen 46 LEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN 124 (311)
T ss_pred EEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCC
Confidence 999999854444455689999998765 466674 889999999999 9999999999999999999998888888999
Q ss_pred CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 006909 351 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 430 (626)
Q Consensus 351 ~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~ 430 (626)
.+|+++..+|+-..|++|..+|.|++||+.......+.+.. ...+|.++...||| .+++++...|..++|++-
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe------~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE------DDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLL 197 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC------CCcceeeEEEcCCC-cEEEEecCCccEEEEEcc
Confidence 99999999999999999999999999999887654332222 23789999999998 689999999999999954
Q ss_pred c------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCC
Q 006909 431 D------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 504 (626)
Q Consensus 431 ~------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~ 504 (626)
. .....+...|.+.+..+.+|||+++|+++|.|.+++||+.++. .. +..
T Consensus 198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~k-----------------le~------- 252 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FK-----------------LEL------- 252 (311)
T ss_pred CCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-ee-----------------eEE-------
Confidence 2 2222233448899999999999999999999999999999873 00 000
Q ss_pred CCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909 505 IGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 505 ~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
.+.++.+.+-..+||.||+||++++. |+..++|+++.+
T Consensus 253 ---------------------------~l~gh~rWvWdc~FS~dg~YlvTass-d~~~rlW~~~~~ 290 (311)
T KOG0315|consen 253 ---------------------------VLTGHQRWVWDCAFSADGEYLVTASS-DHTARLWDLSAG 290 (311)
T ss_pred ---------------------------EeecCCceEEeeeeccCccEEEecCC-CCceeecccccC
Confidence 02334455666789999999999998 799999999988
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-32 Score=263.57 Aligned_cols=269 Identities=23% Similarity=0.361 Sum_probs=226.1
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
...|++++|+.+|..||+|+.||.++||+... ..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----------------------------------------------~l 268 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG----------------------------------------------NL 268 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc----------------------------------------------hh
Confidence 35799999999999999999999999999874 45
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~ 338 (626)
+.++..|.++|.++.|+..| +|++++.|+++.+||..++...+.|. |..+-..+.|- +...|++.+.|+.|+++-+
T Consensus 269 ~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv 346 (524)
T KOG0273|consen 269 ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKV 346 (524)
T ss_pred hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEe
Confidence 67888999999999999887 99999999999999999999999997 55555788997 5778999999999999998
Q ss_pred CCCe-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC-----
Q 006909 339 CEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES----- 412 (626)
Q Consensus 339 ~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~----- 412 (626)
.... ...+.+|.+.|.++.|+|.|.+|++++.|++++||......... ....|...|..+.|+|.|+
T Consensus 347 ~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~-------~l~~Hskei~t~~wsp~g~v~~n~ 419 (524)
T KOG0273|consen 347 GEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH-------DLQAHSKEIYTIKWSPTGPVTSNP 419 (524)
T ss_pred cCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh-------hhhhhccceeeEeecCCCCccCCC
Confidence 7655 44678899999999999999999999999999999976554321 1334557899999998752
Q ss_pred ---cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcccee
Q 006909 413 ---QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 489 (626)
Q Consensus 413 ---~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 489 (626)
..+++++.|++|++||+..++.......|..+|.+++|+|+|+|+|+|+.||.|.+|+++++.......
T Consensus 420 ~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------- 491 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------- 491 (524)
T ss_pred cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec--------
Confidence 589999999999999999888888777799999999999999999999999999999999874332222
Q ss_pred eeccCCcEEEEecCCCCcccccccCC
Q 006909 490 HFFSEGVSVAVQWPGIGTEQKSLCSS 515 (626)
Q Consensus 490 ~~~~~g~~~av~~s~~~~~l~~~~~~ 515 (626)
.++.+.-+.|+..|..+....++
T Consensus 492 ---~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 492 ---GTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred ---CCCeEEEEEEcCCCCEEEEEecC
Confidence 23445666777666666554444
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-33 Score=286.68 Aligned_cols=276 Identities=24% Similarity=0.343 Sum_probs=220.0
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
++..-...++|..|++|+.+||.|-.|..|++|.+...+.....-........ ....... -+..-.
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d-----------~~sad~~---~~~~D~ 438 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNID-----------TESADVD---VDMLDD 438 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhcccc-----------ccccchh---hhhccc
Confidence 33334556999999999999999999999999999863221110000000000 0000000 000011
Q ss_pred ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV 333 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v 333 (626)
.+.....++.||.++|..+.|+|+. +|++||.|++||+|.+.+..++..+. |..+|+.++|+| .|-+||||+.|++.
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tA 517 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTA 517 (707)
T ss_pred cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCcee
Confidence 1234456699999999999999987 99999999999999999999988884 999999999999 99999999999999
Q ss_pred EEEeCCCCeE-EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 334 RIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 334 ~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
++|....... ..+.+|-..|.|+.|+|++.|+++|+.|.++++||+.++..... ..+|.++|++++|+|+|
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi-------F~GH~~~V~al~~Sp~G- 589 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI-------FTGHKGPVTALAFSPCG- 589 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE-------ecCCCCceEEEEEcCCC-
Confidence 9999876554 44778999999999999999999999999999999998876322 23456999999999998
Q ss_pred cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 413 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 413 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+|++|+.|+.|.+||+...........|.+.|.++.|+.+|..||+|+.|++|++||+...
T Consensus 590 r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 590 RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 89999999999999998865555555557999999999999999999999999999999864
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-31 Score=269.62 Aligned_cols=402 Identities=17% Similarity=0.217 Sum_probs=296.5
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC----------CcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS----------VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
.+...|++++.||+|.+|++..+.|...+-++.. ....++.|+|++.+.+.+....+.++......-. .
T Consensus 53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~-~ 131 (893)
T KOG0291|consen 53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKN-E 131 (893)
T ss_pred ecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhc-c
Confidence 5677788889999888888888888776666543 2345677888877766655555554443322211 0
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEE
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYF 324 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l 324 (626)
++ .....+++.+|...|.++.|+.|. +|++||.|.++++|+++..+-+..+ +|.++|.++-|.. +...+
T Consensus 132 ~~------pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~-~~~~l 204 (893)
T KOG0291|consen 132 FN------PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA-NSLDL 204 (893)
T ss_pred cC------cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc-CcceE
Confidence 00 123356778999999999999886 8899999999999999876664433 5999999999998 88899
Q ss_pred EEEeCCCcEEEEeCCC------------------------Ce-----E------EEeccCCCCeEEEEEeeCCCEEEEEe
Q 006909 325 ISGSIDGKVRIWGVCE------------------------KR-----V------VDWADVRDVISAICYIPDGKGFIVGS 369 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~~------------------------~~-----~------~~~~~~~~~i~~i~~sp~g~~l~~g~ 369 (626)
++.+.||.+.+|.... .+ . ..+......+++.+|++.-+.|++|-
T Consensus 205 ~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgF 284 (893)
T KOG0291|consen 205 YTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGF 284 (893)
T ss_pred EEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEe
Confidence 9999999999997651 11 0 00112236799999999999999999
Q ss_pred cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEeCCcceeeeeecCCCCCeEEE
Q 006909 370 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGLPKSGSQMSA 448 (626)
Q Consensus 370 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~ 448 (626)
..|...+|.+....... .+... ..+|..++|+..| .+|+.|+.. |.+-||+.......++..+|...++++
T Consensus 285 ssG~f~LyelP~f~lih-~LSis------~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l 356 (893)
T KOG0291|consen 285 SSGEFGLYELPDFNLIH-SLSIS------DQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSL 356 (893)
T ss_pred cCCeeEEEecCCceEEE-Eeecc------cceeeEEEecccC-CEEEEcCCccceEEEEEeeccceeeeccccccceeeE
Confidence 99999999998776533 23322 2689999999987 688888765 899999988777777777899999999
Q ss_pred EEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeec-cCCcEEEEecCCCCcccccccCCCccccCcccccc
Q 006909 449 SFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL 527 (626)
Q Consensus 449 ~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~ 527 (626)
+++|||++|++|++||.|+|||...+. ....|. |...+.++.|+..|..+.+.+-| +.++.|+..
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~Sgf-----------C~vTFteHts~Vt~v~f~~~g~~llssSLD---GtVRAwDlk 422 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSGF-----------CFVTFTEHTSGVTAVQFTARGNVLLSSSLD---GTVRAWDLK 422 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCce-----------EEEEeccCCCceEEEEEEecCCEEEEeecC---CeEEeeeec
Confidence 999999999999999999999998861 112232 33445577777777777665554 345566653
Q ss_pred CCCC--cc-cCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccc--ccccccc
Q 006909 528 ETAP--WI-RDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR--AISATWG 602 (626)
Q Consensus 528 ~~~~--~~-~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~dg 602 (626)
.... .+ .+.......++.-|.|..+..++...-.|++|++++| ++......|.+.+. ++++ +|
T Consensus 423 RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-----------qllDiLsGHEgPVs~l~f~~-~~ 490 (893)
T KOG0291|consen 423 RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-----------QLLDILSGHEGPVSGLSFSP-DG 490 (893)
T ss_pred ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-----------eeeehhcCCCCcceeeEEcc-cc
Confidence 2211 11 1112224556777779988777775568999999999 55555666777665 3556 79
Q ss_pred eEEEEecCCceEeeeeecCc
Q 006909 603 LVIVTAGCDGMIKTFHNYGL 622 (626)
Q Consensus 603 ~~ivt~g~Dg~Irvw~~~g~ 622 (626)
..|||||||.|||+|++|+-
T Consensus 491 ~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred CeEEeccccceEEEEEeecc
Confidence 99999999999999999984
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-32 Score=240.26 Aligned_cols=244 Identities=27% Similarity=0.512 Sum_probs=214.5
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
.+.|..|+++|.++.|+-||+|.+|++.|.+|++|+...
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r----------------------------------------- 48 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR----------------------------------------- 48 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc-----------------------------------------
Confidence 456789999999999999999999999999999999876
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
+..++++.+|...|.+++.+.|+ .+++|+.|+.|.+||+.+|+.++.+. |...|+.++|+. +...+++|+.|.
T Consensus 49 ----g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~ 123 (307)
T KOG0316|consen 49 ----GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDS 123 (307)
T ss_pred ----cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccc
Confidence 56689999999999999999877 99999999999999999999999995 999999999998 889999999999
Q ss_pred cEEEEeCCCCe--EE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 332 KVRIWGVCEKR--VV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 332 ~v~iwd~~~~~--~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
++++||.++.. ++ .+....+.|.++... +..+++|+.||+++.||++.+...... .+.+|+++.|+
T Consensus 124 s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy---------~g~pit~vs~s 192 (307)
T KOG0316|consen 124 SVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY---------FGHPITSVSFS 192 (307)
T ss_pred eeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh---------cCCcceeEEec
Confidence 99999998754 23 344567788888765 568999999999999999988764321 23799999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 409 RDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
+++ +..++++.|+++++.|-. +....++++.+...-..++++....++++|++||.|++||+.+..
T Consensus 193 ~d~-nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 193 KDG-NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred CCC-CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 998 799999999999999955 566778887777777888999999999999999999999998863
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-31 Score=258.04 Aligned_cols=339 Identities=18% Similarity=0.286 Sum_probs=258.6
Q ss_pred ccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909 168 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 247 (626)
Q Consensus 168 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (626)
-+++....+++.|..-|+|+.|+|||.++||++.||+|.|||=.+++.
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~-------------------------------- 224 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK-------------------------------- 224 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE--------------------------------
Confidence 356777788899999999999999999999999999999999877433
Q ss_pred ecCCccccccCCCceeec---cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe-------------------
Q 006909 248 VIPDEVFQIEESPLQELH---GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV------------------- 304 (626)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~------------------- 304 (626)
+..+. +|.+.|.+++|+||+ .++|++.|++++|||+.++.++++
T Consensus 225 -------------vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd 291 (603)
T KOG0318|consen 225 -------------VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD 291 (603)
T ss_pred -------------EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence 33444 899999999999998 999999999999999977654432
Q ss_pred -------------------------ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe--ccCCCCeEEEE
Q 006909 305 -------------------------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--ADVRDVISAIC 357 (626)
Q Consensus 305 -------------------------~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~~i~~i~ 357 (626)
.+|...|+++..+| ++.+|++|+.||.|.-|+..++..-.+ ..|...|.+++
T Consensus 292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~ 370 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA 370 (603)
T ss_pred eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence 13788899999999 999999999999999999998887665 67889999998
Q ss_pred EeeCCCEEEEEecCCcEEEEEcCCCceeeeE-Ee---------------------------eccc----cccCCCCeEEE
Q 006909 358 YIPDGKGFIVGSITGTCHFYKASGNDLKLEK-VD---------------------------FHDR----KKTSGNKITGI 405 (626)
Q Consensus 358 ~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~-~~---------------------------~~~~----~~~~~~~i~~l 405 (626)
.+..+ .+++.+.|.++++.++......... .. +... .........++
T Consensus 371 ~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v 449 (603)
T KOG0318|consen 371 ASESG-ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAV 449 (603)
T ss_pred ecCCC-cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceE
Confidence 87655 5677778889999877432211100 00 0000 00112345688
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 483 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 483 (626)
+++|++ ..+++|+.|+.|+||.+.. .........|.++|+.++||||+.|||++...+.+.+||+.+...
T Consensus 450 Av~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~------- 521 (603)
T KOG0318|consen 450 AVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV------- 521 (603)
T ss_pred EEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-------
Confidence 999997 7999999999999999763 233334566999999999999999999999999999999998632
Q ss_pred CccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCC---cccCCCcccCCccccCCCCcccccCCCCC
Q 006909 484 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAE 560 (626)
Q Consensus 484 ~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~s~~~~d~ 560 (626)
......|| ..++.+++|+|+...++. ++++-++.+|.+-.+.. -...|...+++++|-.+.. +++++. |-
T Consensus 522 -~~~~w~FH-takI~~~aWsP~n~~vAT---GSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~t-vvSsG~-Da 594 (603)
T KOG0318|consen 522 -KTNRWAFH-TAKINCVAWSPNNKLVAT---GSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDEST-VVSSGQ-DA 594 (603)
T ss_pred -ecceeeee-eeeEEEEEeCCCceEEEe---ccccceEEEEEccChhhheEeccccccCceeEEEecCce-EEeccC-cc
Confidence 11222344 477889999999987664 44455577777744322 2233444488888887766 666666 78
Q ss_pred CCCCCCcc
Q 006909 561 KLPLWDVT 568 (626)
Q Consensus 561 ~i~vwd~~ 568 (626)
.|++|+++
T Consensus 595 ~iK~W~v~ 602 (603)
T KOG0318|consen 595 NIKVWNVT 602 (603)
T ss_pred eeEEeccc
Confidence 99999874
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.6e-32 Score=250.73 Aligned_cols=325 Identities=16% Similarity=0.230 Sum_probs=254.2
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
..+|..|++.|.+++.+|+.+++||||.|-.-.||++.++
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g---------------------------------------- 96 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG---------------------------------------- 96 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC----------------------------------------
Confidence 4567899999999999999999999999999999999884
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
.....+.+|...|+++.|+.+| +|+||+.+|.|+||+..++.....+. .-..+.-+.|+| .+.+|+.|+.||
T Consensus 97 -----e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DG 170 (399)
T KOG0296|consen 97 -----EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDG 170 (399)
T ss_pred -----cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCC
Confidence 3467888999999999999998 99999999999999999998887775 667888999999 999999999999
Q ss_pred cEEEEeCCC-CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 332 KVRIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 332 ~v~iwd~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
.+-+|.+.+ +.+..+.+|..++++-.|.|+|+.++++..||+|++|+..+........... ....+++.++..
T Consensus 171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e------~~~~~~~~~~~~ 244 (399)
T KOG0296|consen 171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE------GLELPCISLNLA 244 (399)
T ss_pred cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc------cCcCCccccccc
Confidence 999999988 5566688999999999999999999999999999999999986543322111 256778888888
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeee--------cCCCC---CeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKG--------LPKSG---SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 479 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~--------~~~~~---~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~ 479 (626)
+ ..++.|+.++.+++-+........-. ..+.. .|-.+.++..-++.|+|+-||+|.|||+.......
T Consensus 245 ~-~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~- 322 (399)
T KOG0296|consen 245 G-STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH- 322 (399)
T ss_pred c-ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe-
Confidence 6 68888999998888875433222211 11222 34455566667888999999999999998641110
Q ss_pred CccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCC
Q 006909 480 KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPA 559 (626)
Q Consensus 480 ~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d 559 (626)
.| -++++ ++.+.|-+ ..+|++++- +
T Consensus 323 -------~c--~he~~-V~~l~w~~--------------------------------------------t~~l~t~c~-~ 347 (399)
T KOG0296|consen 323 -------IC--EHEDG-VTKLKWLN--------------------------------------------TDYLLTACA-N 347 (399)
T ss_pred -------ec--cCCCc-eEEEEEcC--------------------------------------------cchheeecc-C
Confidence 01 12222 23333333 234556665 6
Q ss_pred CCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccccc--ccccceEEEEecCCceEeeeee
Q 006909 560 EKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAI--SATWGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 560 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~dg~~ivt~g~Dg~Irvw~~ 619 (626)
++|+.||..+| ++...+..|..++..| ++ +++++||+|.|++.+||..
T Consensus 348 g~v~~wDaRtG-----------~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 348 GKVRQWDARTG-----------QLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ceEEeeecccc-----------ceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEec
Confidence 99999999999 5555566666666544 45 8999999999999999975
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-32 Score=280.40 Aligned_cols=209 Identities=30% Similarity=0.542 Sum_probs=189.5
Q ss_pred ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
.-...++|.||+++|..+.|+|+.++|+++++|++||+|.+.+
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t------------------------------------- 482 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT------------------------------------- 482 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeeccc-------------------------------------
Confidence 3445667899999999999999999999999999999999987
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
...+..+.||..+|.++.|+|-| +++|+|.|++.++|......+++.| +|.+.|.|+.|+| +.+|+++|
T Consensus 483 --------~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTG 553 (707)
T KOG0263|consen 483 --------WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATG 553 (707)
T ss_pred --------ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccC
Confidence 45577788999999999999999 8999999999999999999999988 5999999999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 328 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
|.|.+||+||+.+|..++ +.+|.++|++++|+|+|++|++|+.||.|.+||+.++..... ...|.+.|.++.
T Consensus 554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~-------l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ-------LKGHTGTIYSLS 626 (707)
T ss_pred CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh-------hhcccCceeEEE
Confidence 999999999999887665 679999999999999999999999999999999998876433 333458999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCcc
Q 006909 407 FSRDESQRIMITSEDSKLRILDGVDV 432 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~~~ 432 (626)
|+.+| ..|++++.|++|++||....
T Consensus 627 FS~dg-~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 627 FSRDG-NVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EecCC-CEEEecCCCCeEEEEEchhh
Confidence 99998 79999999999999997643
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.9e-32 Score=257.85 Aligned_cols=332 Identities=17% Similarity=0.270 Sum_probs=250.8
Q ss_pred cccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 175 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
+.+. |+.+|.+.+|+|-.. .||+|+.|-+.++|++......+. ...
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~------------------------~q~-------- 219 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGS------------------------TQL-------- 219 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccc------------------------hhh--------
Confidence 4444 999999999999776 999999999999999874100000 000
Q ss_pred ccccCCCceeec----cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEE
Q 006909 254 FQIEESPLQELH----GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 254 ~~~~~~~~~~~~----~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
..+....+. .....|++++|+.+| .|++|+.||.+++|+...+ .+.++ .|.++|.++.|+. .|++|+++
T Consensus 220 ---~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~tl~~HkgPI~slKWnk-~G~yilS~ 294 (524)
T KOG0273|consen 220 ---VLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LISTLGQHKGPIFSLKWNK-KGTYILSG 294 (524)
T ss_pred ---hhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCch-hhhhhhccCCceEEEEEcC-CCCEEEec
Confidence 000000011 124689999999988 9999999999999998754 44555 5999999999999 99999999
Q ss_pred eCCCcEEEEeCCCCeEEEecc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 328 SIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
+.|+++.+||..++....... |..+...+.|-.+ ..+++.+.||.|++|.+........ ..+|.+.|.++.
T Consensus 295 ~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t-------~~GH~g~V~alk 366 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKT-------FIGHHGEVNALK 366 (524)
T ss_pred cCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCccee-------eecccCceEEEE
Confidence 999999999999988776544 4444477888654 4799999999999999977655332 222458999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC---------EEEEEeCCccEEEEECCCCCCC
Q 006909 407 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK---------HIISIGDDCRVYVWNYDELCFP 477 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~---------~l~s~s~dg~I~iwd~~~~~~~ 477 (626)
|.|.| .+|++++.|++++||...+....-..+.|...|..+.|+|+|. .|++++.|++|++||+..+
T Consensus 367 ~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--- 442 (524)
T KOG0273|consen 367 WNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--- 442 (524)
T ss_pred ECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---
Confidence 99998 7999999999999999775544444455888999999999764 6899999999999999874
Q ss_pred CCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCC
Q 006909 478 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATW 557 (626)
Q Consensus 478 ~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~ 557 (626)
..+++ +..|..+|.+++|||+|+++++++.
T Consensus 443 ------------------v~i~~--------------------------------f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 443 ------------------VPIHT--------------------------------LMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred ------------------ceeEe--------------------------------eccCCCceEEEEecCCCcEEEecCC
Confidence 12121 2345667899999999999999999
Q ss_pred CCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCc-cccccccccceEEEEecCCceEeeeee
Q 006909 558 PAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVD-DVRAISATWGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 558 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~dg~~ivt~g~Dg~Irvw~~ 619 (626)
++.|.+|+++++ ++.+......+ ....++. +|.+|..+-.||.+++-+.
T Consensus 473 -dg~V~iws~~~~-----------~l~~s~~~~~~Ifel~Wn~-~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 473 -DGCVHIWSTKTG-----------KLVKSYQGTGGIFELCWNA-AGDKLGACASDGSVCVLDL 522 (524)
T ss_pred -CCeeEeccccch-----------heeEeecCCCeEEEEEEcC-CCCEEEEEecCCCceEEEe
Confidence 799999999998 22222222211 1123344 6888888888999988653
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=248.41 Aligned_cols=299 Identities=17% Similarity=0.300 Sum_probs=241.0
Q ss_pred cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
.+..+.+.+++|.+.|.|+++.|...+++||+.|++|+|||+.+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat------------------------------------ 182 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT------------------------------------ 182 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc------------------------------------
Confidence 45567889999999999999999999999999999999999998
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEE
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFIS 326 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s 326 (626)
++...++.||...|..+++++-. ++++++.|+.|+.||++.++.++.+ +|-..|.|++.+| .-+.|++
T Consensus 183 ---------g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t 252 (460)
T KOG0285|consen 183 ---------GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVT 252 (460)
T ss_pred ---------CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cceeEEe
Confidence 44567889999999999999876 9999999999999999999999887 5999999999999 8899999
Q ss_pred EeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909 327 GSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
|+.|.++++||+++...+ .+.+|..+|..+.+.|-...+++|+.|++|++||+..++.... .. .|...+.++
T Consensus 253 ~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t-lt------~hkksvral 325 (460)
T KOG0285|consen 253 GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT-LT------HHKKSVRAL 325 (460)
T ss_pred cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe-ee------cccceeeEE
Confidence 999999999999997655 4778999999999999888999999999999999998876433 22 223789999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCc
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 485 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 485 (626)
+.+|.. ..+++++.| .|+-|++...........|.+.+++++...|| ++++|+++|.|.+||..++......+....
T Consensus 326 ~lhP~e-~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vq 402 (460)
T KOG0285|consen 326 CLHPKE-NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ 402 (460)
T ss_pred ecCCch-hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccccccc
Confidence 999995 566666654 68899987655444455588899999987765 788999999999999998833222211100
Q ss_pred cceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccC
Q 006909 486 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE 528 (626)
Q Consensus 486 ~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~ 528 (626)
.. ....+.-+++.+|...|..|.....+ +.+.+|...+
T Consensus 403 pG--Sl~sEagI~as~fDktg~rlit~ead---KtIk~~keDe 440 (460)
T KOG0285|consen 403 PG--SLESEAGIFASCFDKTGSRLITGEAD---KTIKMYKEDE 440 (460)
T ss_pred CC--ccccccceeEEeecccCceEEeccCC---cceEEEeccc
Confidence 00 11223446788888888888765554 4566666633
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=259.12 Aligned_cols=250 Identities=19% Similarity=0.348 Sum_probs=212.8
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
+.....+++|..+|++|.|+++|.++++|..+|.|++|+..-
T Consensus 128 fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-------------------------------------- 169 (464)
T KOG0284|consen 128 FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-------------------------------------- 169 (464)
T ss_pred eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--------------------------------------
Confidence 333445689999999999999999999999999999998763
Q ss_pred CccccccCCCceeeccCc-cceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEE
Q 006909 251 DEVFQIEESPLQELHGHK-GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
..++.+.+|. ..|++++|+|+. .+++||.||+|+|||....+....+ +|.-.|.+++|+| ...++++|
T Consensus 170 --------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasg 240 (464)
T KOG0284|consen 170 --------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASG 240 (464)
T ss_pred --------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEc
Confidence 2245555554 999999999865 9999999999999999877776666 5888999999999 88999999
Q ss_pred eCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 328 SIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
+.|..|++||.+++.++ .+..|+..|..+.|+|++++|++++.|..+++||+++.+... ..++|...++++.
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~-------~~r~Hkkdv~~~~ 313 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF-------TYRGHKKDVTSLT 313 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH-------Hhhcchhhheeec
Confidence 99999999999998876 477899999999999999999999999999999999544322 1344568999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 407 FSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
|+|-...+|.+|+.||.|..|.+. +.-.......|...|.+++|+|-|..|++|+.|.++++|.....
T Consensus 314 WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 314 WHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 999888899999999999999976 22222223558899999999999999999999999999987653
No 29
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.1e-31 Score=264.47 Aligned_cols=401 Identities=18% Similarity=0.224 Sum_probs=280.1
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeee-----------ecCCCC-CccCCCCCeeeecC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS-----------FTDDGG-FGSNAKEGKIKFGK 239 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~ 239 (626)
...-++.||+.+|+++.|+..|..||+||.|+.|.+||+..-...... |..+.. .+....++.+
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~i---- 173 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMI---- 173 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceE----
Confidence 344567899999999999999999999999999999999753221111 111111 1112222222
Q ss_pred CCCCCceeecCCccccccCCCceeec-cCccceEEEEEcCCCeEEEEeCCCcEEEeccCC----------------C---
Q 006909 240 KKSSHVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC----------------N--- 299 (626)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~----------------~--- 299 (626)
+.|+++.+...... .|.+.|..+++.+ ..+++++.|+.+++|++.. |
T Consensus 174 ------------K~WdL~tqhCf~Thvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~ 240 (888)
T KOG0306|consen 174 ------------KFWDLETQHCFETHVDHRGEIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFI 240 (888)
T ss_pred ------------EEEecccceeeeEEecccceEEEEEEec-ceEEEEecCCceEEEEeecccccccccccceeeccceee
Confidence 34555554444443 6788899999887 6788888888999998710 0
Q ss_pred -----eeeEe----------------------------------------------------------------------
Q 006909 300 -----QCLNV---------------------------------------------------------------------- 304 (626)
Q Consensus 300 -----~~~~~---------------------------------------------------------------------- 304 (626)
+.+..
T Consensus 241 rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~ 320 (888)
T KOG0306|consen 241 RQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTS 320 (888)
T ss_pred eccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheech
Confidence 00000
Q ss_pred -------------------------------------------------ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 305 -------------------------------------------------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 305 -------------------------------------------------~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
.+|...|.+++++. +...+++|+ .+.+++
T Consensus 321 ~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~~~~~Sga-~~Siki 398 (888)
T KOG0306|consen 321 AKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DSILLASGA-GESIKI 398 (888)
T ss_pred hheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-CceeeeecC-CCcEEE
Confidence 01444566666665 444444443 578889
Q ss_pred EeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 336 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 336 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
|+..+.+++...... .+.+..|.|.++++++|...|.+.+||+...... +. .+.|.+.|.+++.+||+ ..+
T Consensus 399 Wn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~-Et------i~AHdgaIWsi~~~pD~-~g~ 469 (888)
T KOG0306|consen 399 WNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLV-ET------IRAHDGAIWSISLSPDN-KGF 469 (888)
T ss_pred EEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhh-hh------hhccccceeeeeecCCC-Cce
Confidence 988888777655544 7888889999999999999999999998776542 22 33567999999999998 799
Q ss_pred EEEeCCCcEEEEeCCc-------ceeeeee-----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC-CCCCcc
Q 006909 416 MITSEDSKLRILDGVD-------VIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF-PSSKQK 482 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~-------~~~~~~~-----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~-~~~~~~ 482 (626)
++|+.|.+|++||..- ....+.. ..-...|.++.+||||++|+.+=-|++++||-+++... ......
T Consensus 470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH 549 (888)
T KOG0306|consen 470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH 549 (888)
T ss_pred EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc
Confidence 9999999999999431 1111111 12356799999999999999999999999999998733 333444
Q ss_pred CCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCC
Q 006909 483 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKL 562 (626)
Q Consensus 483 ~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i 562 (626)
+-++.|+.++|++..++.+-.+-...+|.+.-+. .+.-+..|.+.|..+.|-|+.....+++. |+++
T Consensus 550 kLPV~smDIS~DSklivTgSADKnVKiWGLdFGD------------CHKS~fAHdDSvm~V~F~P~~~~FFt~gK-D~kv 616 (888)
T KOG0306|consen 550 KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD------------CHKSFFAHDDSVMSVQFLPKTHLFFTCGK-DGKV 616 (888)
T ss_pred ccceeEEeccCCcCeEEeccCCCceEEeccccch------------hhhhhhcccCceeEEEEcccceeEEEecC-cceE
Confidence 5566677788887776666444455555544332 23345678888999999999998999998 8999
Q ss_pred CCCCcccCCCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeecCcccc
Q 006909 563 PLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNYGLPIR 625 (626)
Q Consensus 563 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~g~p~~ 625 (626)
+-||...- ...+....|...+ .++++ +|.++||+|.|.+||+|...--|+.
T Consensus 617 KqWDg~kF-----------e~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 617 KQWDGEKF-----------EEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred Eeechhhh-----------hhheeeccchheeeeeEEcC-CCCeEEeccCCceeEeeeccCccee
Confidence 99998776 2233333333333 35556 7999999999999999987765553
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.3e-30 Score=292.12 Aligned_cols=303 Identities=16% Similarity=0.303 Sum_probs=230.4
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
.+.+|.+.|++++|+|+|++||||+.|++|+||++....... .
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~-------~------------------------------ 520 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG-------R------------------------------ 520 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc-------c------------------------------
Confidence 455699999999999999999999999999999976411000 0
Q ss_pred ccCCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
....+...+. +...|.+++|++. .+|++++.||+|++||+.+++.+..+ .|...|++++|+|.++.+|++|+.|++
T Consensus 521 ~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 521 DIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS 599 (793)
T ss_pred ccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE
Confidence 0011222333 3467999999874 38999999999999999999888877 489999999999767899999999999
Q ss_pred EEEEeCCCCeEEEeccCCCCeEEEEEe-eCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 333 VRIWGVCEKRVVDWADVRDVISAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 333 v~iwd~~~~~~~~~~~~~~~i~~i~~s-p~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
|++||++++.......+...+.++.|+ ++|.+|++|+.||.|++||++........+ ..|...|+++.|.+ +
T Consensus 600 v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------~~h~~~V~~v~f~~-~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------IGHSKTVSYVRFVD-S 672 (793)
T ss_pred EEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------cCCCCCEEEEEEeC-C
Confidence 999999988777655666789999995 579999999999999999998765332222 23457899999974 3
Q ss_pred CcEEEEEeCCCcEEEEeCCc--------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909 412 SQRIMITSEDSKLRILDGVD--------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 483 (626)
Q Consensus 412 ~~~l~~~s~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 483 (626)
.++++++.|++|++||+.. ....+. .|...+..++|+|++++|++|+.|+.|++|+.......
T Consensus 673 -~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~------ 743 (793)
T PLN00181 673 -STLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV------ 743 (793)
T ss_pred -CEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce------
Confidence 5899999999999999763 233333 47788899999999999999999999999997653100
Q ss_pred CccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCC
Q 006909 484 SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLP 563 (626)
Q Consensus 484 ~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~ 563 (626)
. ...+...+.. ... ....+..++.+++|+|+|.++++++. ++.|+
T Consensus 744 --~-s~~~~~~~~~------------------------------~~~-~~~~~~~~V~~v~ws~~~~~lva~~~-dG~I~ 788 (793)
T PLN00181 744 --L-SYKFKTIDPV------------------------------SGL-EVDDASQFISSVCWRGQSSTLVAANS-TGNIK 788 (793)
T ss_pred --E-EEecccCCcc------------------------------ccc-ccCCCCcEEEEEEEcCCCCeEEEecC-CCcEE
Confidence 0 0000000000 000 01234457889999999999999888 79999
Q ss_pred CCCc
Q 006909 564 LWDV 567 (626)
Q Consensus 564 vwd~ 567 (626)
+|++
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 9975
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-31 Score=269.46 Aligned_cols=409 Identities=15% Similarity=0.218 Sum_probs=289.3
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcc------------eeeeecCCCCCcc-CCCCCeeeecCCCCCCc
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA------------SCKSFTDDGGFGS-NAKEGKIKFGKKKSSHV 245 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 245 (626)
.-...|++++.+||+++|++++..+.+++|++.+++. ....|.+.+.+.+ ...++.++.|...
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~---- 135 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIK---- 135 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEee----
Confidence 3456799999999999999999999999999988643 2334555554332 2334444443332
Q ss_pred eeecCCccccccCCCceeeccCccceEEEEEcCCC---eEEEEeCCCcEEEeccCCCee-eEee-cCCCCeEEEEEeeCC
Q 006909 246 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQC-LNVF-DHHNYVTCVQFNPID 320 (626)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~p~~ 320 (626)
.+...+.|.||.+.|..+.|+|+- .|++|..|+++++||+..... +.+. .|.+.|++++|.+ +
T Consensus 136 -----------~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d 203 (775)
T KOG0319|consen 136 -----------NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-D 203 (775)
T ss_pred -----------CCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-C
Confidence 245578999999999999999874 689999999999999985544 5554 4999999999999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeC-----CCEEEEEecCCcEEEEEcCCCceeeeEEee----
Q 006909 321 DNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD-----GKGFIVGSITGTCHFYKASGNDLKLEKVDF---- 391 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~-----g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~---- 391 (626)
+..+++++.|..+.+||+.+.+.....+....+-++.+-++ |.++++.+.+|.+++||..+......+-..
T Consensus 204 ~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e 283 (775)
T KOG0319|consen 204 SLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE 283 (775)
T ss_pred CceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchh
Confidence 99999999999999999987777666777777888888777 678999999999999987653322110000
Q ss_pred --------------------------------cc------------------------------------------cccc
Q 006909 392 --------------------------------HD------------------------------------------RKKT 397 (626)
Q Consensus 392 --------------------------------~~------------------------------------------~~~~ 397 (626)
.. -..+
T Consensus 284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~G 363 (775)
T KOG0319|consen 284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPG 363 (775)
T ss_pred hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeC
Confidence 00 0122
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc----ceeeeeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECC
Q 006909 398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~ 472 (626)
|...|.++....+| .+|++++.|.++++|.+.+ ....-.+.+|...|.+++++..+ .+++++|.|++|++|++.
T Consensus 364 H~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred chhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence 45566666644454 6999999999999997632 22222345588999999997655 689999999999999998
Q ss_pred CCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC--CCcccCCCcccCCccccCCCC
Q 006909 473 ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET--APWIRDSERFSLGSWFSNDGP 550 (626)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~--~~~~~~~~~~~~~~~~s~dg~ 550 (626)
....... ............++..+.+++.+|+...++..+. ++..++|..-.. .-.+.+|.+-+..+.|+|..+
T Consensus 443 ~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq---DktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 443 KSKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ---DKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred Ccccccc-cceehhhHHHHhhcccccceEecCCCceEEeccc---ccceeeecccCceEEEEeeCCccceEEEEeccccc
Confidence 7211100 0110001111223444455555666555554333 344566665322 235788889999999999999
Q ss_pred cccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccc-cccceEEEEecCCceEeeeeec
Q 006909 551 CRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAIS-ATWGLVIVTAGCDGMIKTFHNY 620 (626)
Q Consensus 551 ~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~dg~~ivt~g~Dg~Irvw~~~ 620 (626)
.+++++. |.+|+||.+.+. .+...+..|.+-+...+ -.+|..|+||+.||.|++|++.
T Consensus 519 ~laT~Sg-D~TvKIW~is~f-----------SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 519 LLATCSG-DKTVKIWSISTF-----------SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred eeEeccC-CceEEEEEeccc-----------eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 9999998 899999999998 33344444544443222 1289999999999999999964
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=5e-30 Score=269.24 Aligned_cols=252 Identities=34% Similarity=0.558 Sum_probs=209.8
Q ss_pred ccccccc-cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 174 SQEIQAH-KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 174 ~~~l~~H-~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
.+.+.+| ...|.++.|+|+|++|++++.|+.+++|+......
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------------------------------------- 193 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------------------------------------- 193 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------------------
Confidence 5555555 88999999999999999999999999999965210
Q ss_pred cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEecc-CCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~-~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
...+.+.+|...|++++|+|++ ++++++.|++|+|||+ ..+.+++++ +|...|++++|+| .++++++|+.
T Consensus 194 ------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~ 266 (456)
T KOG0266|consen 194 ------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSD 266 (456)
T ss_pred ------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecC
Confidence 1355668999999999999998 9999999999999999 556888888 5999999999999 8899999999
Q ss_pred CCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee-eeEEeeccccccCCCCeEEEEE
Q 006909 330 DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF 407 (626)
Q Consensus 330 dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~ 407 (626)
|++|+|||++++++. .+..|...|++++|++++++|++++.|+.|++||+.++... ...+... .... ++++++|
T Consensus 267 D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~---~~~~-~~~~~~f 342 (456)
T KOG0266|consen 267 DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA---ENSA-PVTSVQF 342 (456)
T ss_pred CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCC---CCCC-ceeEEEE
Confidence 999999999997765 47789999999999999999999999999999999988743 1111111 1112 6999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCcce--eeeeecCCC-CCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 408 SRDESQRIMITSEDSKLRILDGVDVI--HKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 408 s~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~-~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+|++ .++++++.|+.+++||+.... ..+.++... ..+.+...++.+.++++|+.|+.|++|++.++
T Consensus 343 sp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 343 SPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred CCCC-cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 9998 799999999999999988543 444443222 13445556789999999999999999999976
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.1e-29 Score=227.81 Aligned_cols=274 Identities=23% Similarity=0.427 Sum_probs=213.4
Q ss_pred cccccccccccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc-c--------------eeeeecCCCCCccCCC-CC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVA-A--------------SCKSFTDDGGFGSNAK-EG 233 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~-~--------------~~~~~~~~~~~~~~~~-~~ 233 (626)
+...+.+++|++.|+.++|+|- |..|||||.|+.|+||+...+. . ...+++|.+.+++.++ +.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4456788999999999999998 8899999999999999998422 2 2334555555433322 22
Q ss_pred eeeecCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC---eeeEee-cCC
Q 006909 234 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVF-DHH 308 (626)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~---~~~~~~-~~~ 308 (626)
...++..... +.+.+.++.||...|.+++|+++| +|++|+.|+.|-||.+..+ .+...+ .|.
T Consensus 84 t~~Iw~k~~~-------------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 84 TVVIWKKEDG-------------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred eEEEeecCCC-------------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 2233222211 245688999999999999999988 9999999999999998744 455555 499
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909 309 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 384 (626)
Q Consensus 309 ~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~ 384 (626)
..|..+.|+| ...+|+++|.|++|++|.-..+. +..+.+|...|.+++|+|.|..|++++.|++++||-....-
T Consensus 151 qDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~- 228 (312)
T KOG0645|consen 151 QDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL- 228 (312)
T ss_pred ccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc-
Confidence 9999999999 99999999999999999866322 45577888899999999999999999999999999865221
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc----cee--ee-eecCCCCCeEEEEEcCC-CCE
Q 006909 385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIH--KF-KGLPKSGSQMSASFTTT-GKH 456 (626)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~--~~-~~~~~~~~v~~~~~sp~-g~~ 456 (626)
...|..++..+.|. +| .|++++.|+.|++|.-.. +.. .. ....|...|+++.|.|. .+.
T Consensus 229 ----------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~ 295 (312)
T KOG0645|consen 229 ----------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNR 295 (312)
T ss_pred ----------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCc
Confidence 11223789999999 54 899999999999997432 111 11 12347779999999995 789
Q ss_pred EEEEeCCccEEEEECC
Q 006909 457 IISIGDDCRVYVWNYD 472 (626)
Q Consensus 457 l~s~s~dg~I~iwd~~ 472 (626)
|+++++||.|++|.+.
T Consensus 296 L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 296 LASGGDDGIVNFWELE 311 (312)
T ss_pred eeecCCCceEEEEEec
Confidence 9999999999999875
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.3e-30 Score=252.53 Aligned_cols=275 Identities=14% Similarity=0.289 Sum_probs=224.3
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
..+++..|+..|.++.|+|....++++-.+|.|.|||.++
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyet---------------------------------------- 44 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYET---------------------------------------- 44 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEeccc----------------------------------------
Confidence 3456677999999999999999999999999999999987
Q ss_pred cccccCCCceeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
...++.+.-..-+|.+..|-+. +.+++|+.|..|+||+.++++.+..|. |.+.|.|++.+| ...+++++|.|
T Consensus 45 -----qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDD 118 (794)
T KOG0276|consen 45 -----QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDD 118 (794)
T ss_pred -----ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCc
Confidence 3345666667778888888865 599999999999999999999999996 999999999999 88899999999
Q ss_pred CcEEEEeCCCCe--EEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909 331 GKVRIWGVCEKR--VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 407 (626)
Q Consensus 331 g~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 407 (626)
-+|++||...+- ...+.+|...|.+++|+| |.+.+++++-|++|++|.+........ ..+|...|.++.|
T Consensus 119 m~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT-------l~gHekGVN~Vdy 191 (794)
T KOG0276|consen 119 MTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT-------LEGHEKGVNCVDY 191 (794)
T ss_pred cEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee-------eeccccCcceEEe
Confidence 999999998754 345789999999999999 678999999999999999987654322 2234589999999
Q ss_pred cCCC-CcEEEEEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCC-ccC
Q 006909 408 SRDE-SQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKN 483 (626)
Q Consensus 408 s~~~-~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~ 483 (626)
-+.| .-+|++|++|.+|+|||..+ +++++.+ |...|..++|+|.-..|++||+||+++||+-.+-...... ...
T Consensus 192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG--Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl 269 (794)
T KOG0276|consen 192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG--HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL 269 (794)
T ss_pred ccCCCcceEEecCCCceEEEeecchHHHHHHhhc--ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC
Confidence 8765 34899999999999999764 5556655 8889999999999999999999999999998875322221 111
Q ss_pred CccceeeeccCCcEEEEec
Q 006909 484 SVRSCEHFFSEGVSVAVQW 502 (626)
Q Consensus 484 ~~~~~~~~~~~g~~~av~~ 502 (626)
...-|++..+.+..+++++
T Consensus 270 eRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 270 ERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred ceEEEEeecCCCCeEEEec
Confidence 2233444444444455553
No 35
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.2e-31 Score=258.36 Aligned_cols=293 Identities=23% Similarity=0.319 Sum_probs=232.2
Q ss_pred cCCCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCC-CeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 257 EESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~-~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
....++++.||+..|+++.|.| .+ +|++++.|+.|+||++.. +.++++| +|..+|..++|++ ++..|++++.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeeccee
Confidence 3456789999999999999999 55 889999999999999976 8999999 5999999999999 9999999999999
Q ss_pred EEEEeCCCCeEEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 333 VRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
|++||+++|++.........++|+.|+|++ +.+++|+.|+.|+.||+++++...+ ...|-+.|..+.|-++|
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe-------Yd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE-------YDRHLGAILDITFVDEG 354 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH-------HHhhhhheeeeEEccCC
Confidence 999999999999999999999999999998 8999999999999999999886433 22344789999999998
Q ss_pred CcEEEEEeCCCcEEEEeCCccee-eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909 412 SQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 490 (626)
Q Consensus 412 ~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 490 (626)
.+++++++|++++||+.+..+. .+....+.....++..+|++++++.-+.|+.|.++.+............
T Consensus 355 -~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f------- 426 (503)
T KOG0282|consen 355 -RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF------- 426 (503)
T ss_pred -ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhh-------
Confidence 7999999999999999774432 2223334456677889999999999999999999997653111111000
Q ss_pred eccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909 491 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 491 ~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
.|.. -..+...+.|||||++|++++. +|++.+||..+.
T Consensus 427 ---eGh~--------------------------------------vaGys~~v~fSpDG~~l~SGds-dG~v~~wdwkt~ 464 (503)
T KOG0282|consen 427 ---EGHS--------------------------------------VAGYSCQVDFSPDGRTLCSGDS-DGKVNFWDWKTT 464 (503)
T ss_pred ---ccee--------------------------------------ccCceeeEEEcCCCCeEEeecC-CccEEEeechhh
Confidence 1111 0123456779999999999988 899999999886
Q ss_pred CCCCCCChhhHHHHhhhccCCcc--ccccccccceEEEEecCCceEeeee
Q 006909 571 SDGYCQDPQQQRLQQQCLNNVDD--VRAISATWGLVIVTAGCDGMIKTFH 618 (626)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~dg~~ivt~g~Dg~Irvw~ 618 (626)
++......|.+. .+.+.+---..+||+||||.|++|+
T Consensus 465 -----------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 -----------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -----------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 333333333222 2233333456799999999999995
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=3.8e-31 Score=249.56 Aligned_cols=281 Identities=17% Similarity=0.288 Sum_probs=225.2
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
-+..|..+.|.|+|+.|++|+..|.+.+|+..+. .
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---------------------------------------------n 129 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---------------------------------------------N 129 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee---------------------------------------------e
Confidence 4568999999999999999999999999997541 1
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
....++.|..+|.++.|++++ .++||+.+|.|++|+..-........ |...|++++|+| +...|++++.||+|+|||
T Consensus 130 FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 130 FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEe
Confidence 234567899999999999988 99999999999999987544433334 458999999999 889999999999999999
Q ss_pred CCCCe-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 338 VCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 338 ~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
....+ ...+.+|.-.|.+++|+|.-..+++|+.|..|++||.+++.+... ++ .|...|..+.|+|++ ++|+
T Consensus 209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t---lh----~HKntVl~~~f~~n~-N~Ll 280 (464)
T KOG0284|consen 209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT---LH----GHKNTVLAVKFNPNG-NWLL 280 (464)
T ss_pred ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh---hh----hccceEEEEEEcCCC-CeeE
Confidence 87644 344588999999999999999999999999999999999887543 22 234789999999998 8999
Q ss_pred EEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC-CCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCC
Q 006909 417 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG 495 (626)
Q Consensus 417 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g 495 (626)
+++.|..++++|++.....+....|...++++.|+|- ..++.+|+.||.|..|.+.... + ...+.+-+++
T Consensus 281 t~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-p--------~~~i~~AHd~ 351 (464)
T KOG0284|consen 281 TGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE-P--------LGEIPPAHDG 351 (464)
T ss_pred EccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc-c--------ccCCCccccc
Confidence 9999999999999966666666669999999999995 4678889999999999998321 1 1112233456
Q ss_pred cEEEEecCCCCcccccccCCCccccCccccc
Q 006909 496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 526 (626)
Q Consensus 496 ~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~ 526 (626)
.+..++|.|-|..|+..+. ++.+++|..
T Consensus 352 ~iwsl~~hPlGhil~tgsn---d~t~rfw~r 379 (464)
T KOG0284|consen 352 EIWSLAYHPLGHILATGSN---DRTVRFWTR 379 (464)
T ss_pred ceeeeeccccceeEeecCC---Ccceeeecc
Confidence 6667777777766655333 344555655
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=6.4e-29 Score=246.27 Aligned_cols=278 Identities=24% Similarity=0.441 Sum_probs=222.2
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
.++|++|.++|++++|+|++++|++++.||.|++|++.+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~---------------------------------------- 41 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---------------------------------------- 41 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----------------------------------------
Confidence 3567899999999999999999999999999999999862
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
.....+.+|...+..+.|+|++ .+++++.|+.|++||+.+++.+..+. |...+.++.|+| ++.++++++.++
T Consensus 42 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 115 (289)
T cd00200 42 -----ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDK 115 (289)
T ss_pred -----CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCC
Confidence 3456677899999999999987 89999999999999999877777664 777999999999 788888888899
Q ss_pred cEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 332 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 332 ~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
.|++||+.+++... +..+...+.+++|+|++.++++++.+|.+++||+...+.... +. .+...+.++.|+|+
T Consensus 116 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~------~~~~~i~~~~~~~~ 188 (289)
T cd00200 116 TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT-LT------GHTGEVNSVAFSPD 188 (289)
T ss_pred eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee-Ee------cCccccceEEECCC
Confidence 99999999666544 456888999999999999998888899999999986554322 22 23468999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 490 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 490 (626)
+ ..+++++.++.|++||............+...+.++.|+|++.++++++.|+.|++|++.++.......
T Consensus 189 ~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--------- 258 (289)
T cd00200 189 G-EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--------- 258 (289)
T ss_pred c-CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---------
Confidence 7 688888889999999987544333333477799999999999999998889999999998642111110
Q ss_pred eccCCcEEEEecCCCCcccccccCC
Q 006909 491 FFSEGVSVAVQWPGIGTEQKSLCSS 515 (626)
Q Consensus 491 ~~~~g~~~av~~s~~~~~l~~~~~~ 515 (626)
.+.+.+..+.|++++..++....+
T Consensus 259 -~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 259 -GHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred -ccCCcEEEEEECCCCCEEEEecCC
Confidence 122345666777776666554443
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-30 Score=241.30 Aligned_cols=248 Identities=23% Similarity=0.390 Sum_probs=220.9
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
-.+...|+||++.|..++|+..|++||+++.|-.+++||..+.
T Consensus 140 g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~------------------------------------- 182 (406)
T KOG0295|consen 140 GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF------------------------------------- 182 (406)
T ss_pred hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-------------------------------------
Confidence 3447889999999999999999999999999999999999762
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s 328 (626)
..+++.+.+|...|.+++|-|.| ++++++.|.+|+.|++.++-++.+|. |..+|..++.+. ||.++++++
T Consensus 183 -------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s 254 (406)
T KOG0295|consen 183 -------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCS 254 (406)
T ss_pred -------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecC
Confidence 34577888999999999999987 99999999999999999999999995 889999999999 999999999
Q ss_pred CCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeC---------------CCEEEEEecCCcEEEEEcCCCceeeeEEeec
Q 006909 329 IDGKVRIWGVCEKRVV-DWADVRDVISAICYIPD---------------GKGFIVGSITGTCHFYKASGNDLKLEKVDFH 392 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~---------------g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 392 (626)
.|.+|++|-+.++++. .+..|..+|.+++|.|. +.++.+++.|++|++||+.++.+...
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t----- 329 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT----- 329 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE-----
Confidence 9999999999888654 36788889999999773 25899999999999999999977554
Q ss_pred cccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 393 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 393 ~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
..+|.+.|.+++|+|.| ++|+++.+|+++++||+.+.........|...++++.|+.+..++++|+-|.++++|..
T Consensus 330 --L~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 330 --LVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred --EecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 23346899999999998 89999999999999999877766666678999999999999999999999999999964
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=5.5e-30 Score=232.90 Aligned_cols=253 Identities=20% Similarity=0.292 Sum_probs=219.8
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
..-.-++++|+++|..+.|.+|++.|+++|.|.+|+.||+++
T Consensus 80 ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t-------------------------------------- 121 (338)
T KOG0265|consen 80 CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET-------------------------------------- 121 (338)
T ss_pred ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc--------------------------------------
Confidence 334456779999999999999999999999999999999998
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
++.+..+++|..-|+.+.-+.-| ++.+++.|+++++||+++..+++++...-.++++.|.. .+..+++|+
T Consensus 122 -------G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sgg 193 (338)
T KOG0265|consen 122 -------GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGG 193 (338)
T ss_pred -------ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeecc
Confidence 45578889999999999854445 67899999999999999999999999889999999998 899999999
Q ss_pred CCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEE
Q 006909 329 IDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~ 406 (626)
.|+.|++||++.+... .+.+|.+.|+.+..+|+|.++.+-+.|.++++||++-...... ...+.++...........+
T Consensus 194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 9999999999887654 5789999999999999999999999999999999986544333 2233443334445677889
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 407 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
|+|++ ..+.+|+.|..+++||.......++..+|.+.|+.+.|+|...+|.+++.|.+|++=.
T Consensus 274 wsp~~-~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 274 WSPNG-TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ccCCC-CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99997 7999999999999999887777888888999999999999999999999999998743
No 40
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.4e-30 Score=236.91 Aligned_cols=315 Identities=20% Similarity=0.355 Sum_probs=240.5
Q ss_pred CcccccChhhHHHHHHHHHHhhccccchhccccCCCCCCCCccchhHhhhcccccccccccccccccc-cccCcEEEEEE
Q 006909 111 PECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKF 189 (626)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~f 189 (626)
.+.-.+++.++..++.+.++-|.++. ..........-.. ....+...+. ..+..+.+.++ +.+.-+-|..|
T Consensus 150 ~EV~VVppSRLlaLlGQaLKWQqHQG--LLPPGt~iDLFRG-kAA~K~~~Ee-----~~Pt~l~r~IKFg~KSh~EcA~F 221 (508)
T KOG0275|consen 150 GEVHVVPPSRLLALLGQALKWQQHQG--LLPPGTTIDLFRG-KAAMKDQEEE-----RYPTQLARSIKFGQKSHVECARF 221 (508)
T ss_pred CceEEcChHHHHHHHHHHhhhHhhcC--CCCCCceeeeccc-hhhhhhhHhh-----hchHHhhhheecccccchhheee
Confidence 44555788999999999888776642 1111111111011 1111111111 11112222222 55677889999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCcc
Q 006909 190 SPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKG 269 (626)
Q Consensus 190 spdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 269 (626)
||||+||++|+.||-|.+||..+++... ++..+....+.-|..
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlrK-------------------------------------DLkYQAqd~fMMmd~ 264 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLRK-------------------------------------DLKYQAQDNFMMMDD 264 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhhh-------------------------------------hhhhhhhcceeeccc
Confidence 9999999999999999999999865421 011222344556889
Q ss_pred ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-
Q 006909 270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD- 345 (626)
Q Consensus 270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~- 345 (626)
.|.|+.|+.|. .|++|+.||.|++|.+.+|+|++.|. |...|+|+.|+. ++..+++++.|.++++.-+.+|++..
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKE 343 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKE 343 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHH
Confidence 99999999887 99999999999999999999999995 999999999999 99999999999999999999988764
Q ss_pred eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 006909 346 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 425 (626)
Q Consensus 346 ~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~ 425 (626)
+.+|...|+...|.++|..+++++.||+|++|+..+.++....-. .+...+|.++..-|.++..++++...++|.
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-----~~~d~~vnsv~~~PKnpeh~iVCNrsntv~ 418 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP-----LGTDYPVNSVILLPKNPEHFIVCNRSNTVY 418 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC-----CCCcccceeEEEcCCCCceEEEEcCCCeEE
Confidence 789999999999999999999999999999999998876443111 123478999999998888999999999999
Q ss_pred EEeCC-cceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909 426 ILDGV-DVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 426 iwd~~-~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 476 (626)
|.++. ..+..+.. ....+...+++.+|.|.++.+.++|+.++.|.+.++..
T Consensus 419 imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 419 IMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred EEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 99976 34444432 33456677888999999999999999999999998743
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9.1e-29 Score=221.89 Aligned_cols=207 Identities=22% Similarity=0.386 Sum_probs=171.7
Q ss_pred ceeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCC---CeeeEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909 261 LQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC---NQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKV 333 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~---~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v 333 (626)
++.+.+|.+.+..++|+|. | .|++|+.|+.|++|+... -.+...+ .|...|.+++|+| .+++|++||.|.++
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATV 85 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceE
Confidence 6788899999999999998 6 799999999999999984 3344444 3999999999999 99999999999999
Q ss_pred EEEeCCCCe---EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 334 RIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 334 ~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
.||.-..++ +-.+.+|...|.+++|+++|++||+++.|..+-||.+..... ++ ...-...|...|..+.|+|.
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-fe---c~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-FE---CIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-EE---EEeeeccccccccEEEEcCC
Confidence 999876544 335789999999999999999999999999999999974332 22 12223345678999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCC---cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 411 ESQRIMITSEDSKLRILDGV---DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
. .+|++++.|++|++|+-. .-........|...|.+++|++.|..|+++++|++++||.+..
T Consensus 162 ~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 162 E-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred c-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 5 699999999999999744 2233333344777999999999999999999999999999653
No 42
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=224.22 Aligned_cols=279 Identities=18% Similarity=0.272 Sum_probs=234.8
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
+.+++|.+.|.+++|+.+|..||+|+.|+++++|++...+.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--------------------------------------- 54 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--------------------------------------- 54 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------------------------
Confidence 66789999999999999999999999999999999986321
Q ss_pred cccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
..-....+|.+.|-.++|+|.. .+++++.|++|++||++.+++.........-.-+.|+| ++++++.++.|..
T Consensus 55 ----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp-~g~~~~~~~kdD~ 129 (313)
T KOG1407|consen 55 ----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSP-DGEYIAVGNKDDR 129 (313)
T ss_pred ----hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcC-CCCEEEEecCccc
Confidence 1123456899999999999854 89999999999999999999999998777777889999 9999999999999
Q ss_pred EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 333 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
|.+.|.++.+++........+..++|+.+++.++.....|.|.|.....-+... ....|.....||.|+|+|
T Consensus 130 it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~-------si~AH~snCicI~f~p~G- 201 (313)
T KOG1407|consen 130 ITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ-------SIKAHPSNCICIEFDPDG- 201 (313)
T ss_pred EEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc-------ccccCCcceEEEEECCCC-
Confidence 999999999998888888889999999888888888888999998876443321 234456889999999998
Q ss_pred cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeec
Q 006909 413 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 492 (626)
Q Consensus 413 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 492 (626)
+++++|+.|..+.+||+.+.+..-....+.-+|..++||.||++||+||+|..|-|=+++++..... +.
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e-----------I~ 270 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE-----------IP 270 (313)
T ss_pred ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE-----------ee
Confidence 8999999999999999987665555555788999999999999999999999999999998743322 23
Q ss_pred cCCcEEEEecCCCCcccccccCCC
Q 006909 493 SEGVSVAVQWPGIGTEQKSLCSSS 516 (626)
Q Consensus 493 ~~g~~~av~~s~~~~~l~~~~~~~ 516 (626)
.++.+..|+|+|....|+..+.+.
T Consensus 271 ~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 271 CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred ccCCceeEEecCCCceeeEEecCC
Confidence 356677778888777777666543
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.7e-29 Score=263.69 Aligned_cols=250 Identities=25% Similarity=0.410 Sum_probs=212.0
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
+.+++.+|...|++++|+|+|+++++|+.|++|+|||+...
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--------------------------------------- 235 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--------------------------------------- 235 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---------------------------------------
Confidence 56677899999999999999999999999999999999431
Q ss_pred cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
...++++.+|...|++++|+|++ .+++|+.|++|+|||+++++++..+. |...|++++|++ ++++|++++.|
T Consensus 236 -----~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d 309 (456)
T KOG0266|consen 236 -----GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYD 309 (456)
T ss_pred -----CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCC
Confidence 34578899999999999999998 99999999999999999999999995 999999999999 99999999999
Q ss_pred CcEEEEeCCCCeE--E-EeccCCC--CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909 331 GKVRIWGVCEKRV--V-DWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 331 g~v~iwd~~~~~~--~-~~~~~~~--~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
+.|++||+.++.. . ....+.. .+++++|+|+++++++++.|+.+++||+.............. . ...+.+.
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~---~-~~~~~~~ 385 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN---L-VRCIFSP 385 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC---c-ceeEecc
Confidence 9999999999883 2 3444433 589999999999999999999999999998776543222111 0 0244455
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCC-CCCeEEEEEcCCCCEEEEEe--CCccEEEEECC
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK-SGSQMSASFTTTGKHIISIG--DDCRVYVWNYD 472 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~s~s--~dg~I~iwd~~ 472 (626)
.+++.+ .++++|+.|+.|++||..+.........| ...+..++++|..+++++++ .|+.|++|..+
T Consensus 386 ~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 386 TLSTGG-KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccCCC-CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 557776 79999999999999998865555555556 88899999999999999998 78999999865
No 44
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-28 Score=220.58 Aligned_cols=297 Identities=19% Similarity=0.237 Sum_probs=232.0
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
|+||..+++.++|+.+|.+|.+++.|.++.||-..+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-------------------------------------------- 41 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-------------------------------------------- 41 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecC--------------------------------------------
Confidence 679999999999999999999999999999998766
Q ss_pred cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC-----C
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-----D 330 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-----d 330 (626)
++.+.++.||++.|+|+....+. .+++|+.|.++++||+++|+++..+....+|..+.|++ ++++++.... .
T Consensus 42 -GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~ 119 (327)
T KOG0643|consen 42 -GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF-GGNLILASTDKQMGYT 119 (327)
T ss_pred -CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-CCcEEEEEehhhcCcc
Confidence 45688999999999999998765 99999999999999999999999999999999999999 8888776653 3
Q ss_pred CcEEEEeCCC-------Ce-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909 331 GKVRIWGVCE-------KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402 (626)
Q Consensus 331 g~v~iwd~~~-------~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 402 (626)
+.|.++|++. .+ ...+..+...++.+-|.|-++.|++|..+|.|.+||++++.........| ...|
T Consensus 120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h------~~~I 193 (327)
T KOG0643|consen 120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH------SSKI 193 (327)
T ss_pred eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh------cccc
Confidence 6799999983 33 55677778899999999999999999999999999999987655443333 4699
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCcc
Q 006909 403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK 482 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 482 (626)
+.++++|+. .++++++.|.+-++||..+....-.. ....+|++.+++|...+++.|+.....-|=-....
T Consensus 194 nd~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty-~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r-------- 263 (327)
T KOG0643|consen 194 NDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTY-TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTR-------- 263 (327)
T ss_pred ccccccCCc-ceEEecccCccceeeeccceeeEEEe-eecccccceecccccceEEecCCceeeeeeeeccc--------
Confidence 999999997 79999999999999998754332222 24679999999999988888764322111111100
Q ss_pred CCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCC
Q 006909 483 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKL 562 (626)
Q Consensus 483 ~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i 562 (626)
.|.. ...++.+.. .+..-...+|-.++.+++|+|||+-.+|++. |+.|
T Consensus 264 -----------~GKF--------EArFyh~i~------------eEEigrvkGHFGPINsvAfhPdGksYsSGGE-DG~V 311 (327)
T KOG0643|consen 264 -----------AGKF--------EARFYHLIF------------EEEIGRVKGHFGPINSVAFHPDGKSYSSGGE-DGYV 311 (327)
T ss_pred -----------ccch--------hhhHHHHHH------------HHHhccccccccCcceeEECCCCcccccCCC-CceE
Confidence 0000 001111000 0111224567778999999999999989888 7888
Q ss_pred CCCCc
Q 006909 563 PLWDV 567 (626)
Q Consensus 563 ~vwd~ 567 (626)
++.-.
T Consensus 312 R~h~F 316 (327)
T KOG0643|consen 312 RLHHF 316 (327)
T ss_pred EEEEe
Confidence 87543
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=239.45 Aligned_cols=291 Identities=20% Similarity=0.283 Sum_probs=222.1
Q ss_pred CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee---eEee-cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~---~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
.+..+.+..|+..|.-+.||++| +||+++.|.+..+|++..... ..++ +|..+|..+.|+| |.+++++++.+..
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~ 292 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEV 292 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHh
Confidence 45567888999999999999999 999999999999998854433 3333 5999999999999 9999999999999
Q ss_pred EEEEeCCCCeEEEeccCC--CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 333 VRIWGVCEKRVVDWADVR--DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 333 v~iwd~~~~~~~~~~~~~--~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
+.+||+.++.......+. ..+.+++|.|||..+++|+.|++|..||+.++.... +.... ...|.+++.++|
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~--W~gvr-----~~~v~dlait~D 365 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN--WEGVR-----DPKVHDLAITYD 365 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc--ccccc-----cceeEEEEEcCC
Confidence 999999999988766554 889999999999999999999999999998775322 22111 256999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 490 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 490 (626)
| +++++...|..|++++.......-. .....+|++++.|.+++++++.=.+..|++||++....+.+....
T Consensus 366 g-k~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh------- 436 (519)
T KOG0293|consen 366 G-KYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH------- 436 (519)
T ss_pred C-cEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc-------
Confidence 8 7888888999999999664333211 124578999999999999999999999999999965332221000
Q ss_pred eccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909 491 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 491 ~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
..+.++...+-+ -.+..+++|++. |++|+||+...+
T Consensus 437 -------------kq~~fiIrSCFg------------------------------g~~~~fiaSGSE-D~kvyIWhr~sg 472 (519)
T KOG0293|consen 437 -------------KQGHFIIRSCFG------------------------------GGNDKFIASGSE-DSKVYIWHRISG 472 (519)
T ss_pred -------------cccceEEEeccC------------------------------CCCcceEEecCC-CceEEEEEccCC
Confidence 111111111111 113346888888 899999999888
Q ss_pred CCCCCCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeeec
Q 006909 571 SDGYCQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHNY 620 (626)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~ 620 (626)
++......|.... +++.|++..++|+||+||+||||.+-
T Consensus 473 -----------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 473 -----------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred -----------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 3333333444333 34557799999999999999999753
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.6e-29 Score=254.00 Aligned_cols=288 Identities=16% Similarity=0.249 Sum_probs=234.6
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
+..-+..|..++|+|...+++++-..|.|++||..-
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM-------------------------------------------- 40 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-------------------------------------------- 40 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhh--------------------------------------------
Confidence 334566799999999999999999999999999875
Q ss_pred cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
+..+..|..|.++|..++|+|++ .++||+.|..|+||+..+.+|+.++ +|-+.|..+.|++ .-..++++|.|.+|+
T Consensus 41 -~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIr 118 (1202)
T KOG0292|consen 41 -GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIR 118 (1202)
T ss_pred -hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEE
Confidence 45688899999999999999988 9999999999999999999999877 6999999999999 888999999999999
Q ss_pred EEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEE----------------------ee
Q 006909 335 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV----------------------DF 391 (626)
Q Consensus 335 iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~----------------------~~ 391 (626)
||+..++.++. ..+|...|.|..|+|....+++++-|.+|++||+.+-+...... ..
T Consensus 119 IWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 119 IWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred EEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 99999988765 78999999999999999999999999999999986532211100 00
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909 392 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 469 (626)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iw 469 (626)
.....+|...|+-++|+|.- -+|++|++|..|++|..... ...-...+|..+|.++-|+|...+|++.|+|++|+||
T Consensus 199 K~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 11133567889999999986 59999999999999986532 2222335589999999999999999999999999999
Q ss_pred ECCCCCCC-CCCccCCccceeeeccCCcEEEEecCCCCcccccc
Q 006909 470 NYDELCFP-SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL 512 (626)
Q Consensus 470 d~~~~~~~-~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~ 512 (626)
|+...... ...+.....-+++.||....+|.+ ++.|-.++.+
T Consensus 278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkl 320 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKL 320 (1202)
T ss_pred ecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEE
Confidence 99876322 222334455677788887776654 5555544443
No 47
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-27 Score=217.95 Aligned_cols=276 Identities=25% Similarity=0.406 Sum_probs=214.9
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
+...+.++.-.+.|+++.|+++|.+|++++.|-+++|||..+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-------------------------------------- 45 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-------------------------------------- 45 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC--------------------------------------
Confidence 445566666788999999999999999999999999999988
Q ss_pred CccccccCCCceeeccCccceEEEEEcC-CCeEEEEeC--CCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEE
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSM--DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS 326 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~l~s~s~--d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s 326 (626)
+..++++..+...|..++|.. +..++.++. |.+|+..++.+++.++.|. |...|+.++.+| -++.+++
T Consensus 46 -------g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS 117 (311)
T KOG1446|consen 46 -------GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLS 117 (311)
T ss_pred -------CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEe
Confidence 345667777777888888864 456666665 8899999999999999995 999999999999 7799999
Q ss_pred EeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc-eeeeEEeeccccccCCCCeEEE
Q 006909 327 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-LKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~i~~l 405 (626)
++.|++|++||++..++......... ..++|.|.|-++|++.....|++||++... -+...+.... ......+.+
T Consensus 118 ~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---~~~~ew~~l 193 (311)
T KOG1446|consen 118 SSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---NDEAEWTDL 193 (311)
T ss_pred cccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC---CCccceeee
Confidence 99999999999997666544433322 347899999999999998899999998763 3333333331 223688999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCC-eEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCC--
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGS-QMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-- 480 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~-v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~-- 480 (626)
.|+||| +.++.++..+.+++.|.- .....+........ ....+|+||++++++|+.||+|.+|+++++......
T Consensus 194 ~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 194 EFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred EEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 999998 789999999999999965 44555666544442 367889999999999999999999999988432222
Q ss_pred ccCCccceeeeccCCcE
Q 006909 481 QKNSVRSCEHFFSEGVS 497 (626)
Q Consensus 481 ~~~~~~~~~~~~~~g~~ 497 (626)
.......|+.|.|.-..
T Consensus 273 ~~~~~~~~~~fnP~~~m 289 (311)
T KOG1446|consen 273 PNGGPVSCVRFNPRYAM 289 (311)
T ss_pred CCCCCccccccCCceee
Confidence 22445556666664433
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=9.5e-29 Score=229.47 Aligned_cols=214 Identities=16% Similarity=0.218 Sum_probs=189.3
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s 328 (626)
..-|....+..+.+.+|.+.|.|+++.|.+ .|++|+.|++|+|||+.+|+...++. |...|..+++++ ...|+++++
T Consensus 134 rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~g 212 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAG 212 (460)
T ss_pred CccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEec
Confidence 344555667788899999999999999977 89999999999999999999988885 999999999999 888999999
Q ss_pred CCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909 329 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 407 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 407 (626)
.|+.|+.||+...++++ ..+|-..|.|++.+|.-+.|++|+.|.++++||+++..... . ..+|..+|.++.+
T Consensus 213 edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~---~----l~GH~~~V~~V~~ 285 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH---V----LSGHTNPVASVMC 285 (460)
T ss_pred CCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE---E----ecCCCCcceeEEe
Confidence 99999999999888664 78899999999999999999999999999999999865432 1 2345689999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 408 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 408 s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.|-++ .+++++.|++|++||++.......+..|...+.+++.+|....+++++.| .|+-|++..+
T Consensus 286 ~~~dp-qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g 350 (460)
T KOG0285|consen 286 QPTDP-QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG 350 (460)
T ss_pred ecCCC-ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc
Confidence 98764 79999999999999999887777777799999999999999999999877 5999998876
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=2.3e-29 Score=232.58 Aligned_cols=242 Identities=24% Similarity=0.449 Sum_probs=203.7
Q ss_pred ccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909 168 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 247 (626)
Q Consensus 168 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (626)
.....+.+.|.||+|.|.|+.|. .+.|++|+.|.+|+|||+.+
T Consensus 224 ~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t----------------------------------- 266 (499)
T KOG0281|consen 224 KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT----------------------------------- 266 (499)
T ss_pred cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC-----------------------------------
Confidence 35567788899999999999994 66999999999999999998
Q ss_pred ecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEe----ecCCCCeEEEEEeeCCCCE
Q 006909 248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV----FDHHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~----~~~~~~v~~~~~~p~~~~~ 323 (626)
++++.++.+|...|..+.|+. |+++++|.|.++.+||+.....+.. .+|...|+.+.| +.++
T Consensus 267 ----------ge~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~ky 332 (499)
T KOG0281|consen 267 ----------GEPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKY 332 (499)
T ss_pred ----------CchhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccce
Confidence 567889999999999999975 7999999999999999987653322 259999999999 5579
Q ss_pred EEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909 324 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 402 (626)
+++++.|.+|++|++.+++.+. +.+|+..|-|+.+ .|+++++|+.|.+|++||+..+.+... ..+|..-|
T Consensus 333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv-------LeGHEeLv 403 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV-------LEGHEELV 403 (499)
T ss_pred EEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH-------HhchHHhh
Confidence 9999999999999999998776 6688899988875 688999999999999999998876422 33455789
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCccee---------eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIH---------KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
.++.|.. +.+++|+.||+|+|||+..... ......|.+.|..+.|. ...|++++.|.+|.|||+.+
T Consensus 404 RciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 404 RCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred hheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCC
Confidence 9999975 4899999999999999753222 22234578899999984 67899999999999999988
Q ss_pred C
Q 006909 474 L 474 (626)
Q Consensus 474 ~ 474 (626)
+
T Consensus 479 ~ 479 (499)
T KOG0281|consen 479 G 479 (499)
T ss_pred C
Confidence 6
No 50
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.3e-27 Score=239.64 Aligned_cols=291 Identities=19% Similarity=0.306 Sum_probs=237.8
Q ss_pred eeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909 262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 341 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~ 341 (626)
.++.||...|..++++.++.++..+..+.+++|+..+.+|++++.-. .+.+..|.| .++++++|...|.+.+||+.+.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehh
Confidence 35679999999999999986666666789999999999999999755 899999999 9999999999999999999987
Q ss_pred eEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce----eeeEEee-ccccccCCCCeEEEEEcCCCCcEE
Q 006909 342 RVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDF-HDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 342 ~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~----~~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
.++. ...|.+.|.+++.+||++.+++|+.|.+|++||+.-... ....+.+ +.+.-.-...|.|+.+|||| ++|
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~L 523 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLL 523 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEE
Confidence 7664 557999999999999999999999999999999742111 0000111 11111234789999999998 899
Q ss_pred EEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCC
Q 006909 416 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG 495 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g 495 (626)
+++--|++++||-+.+....+...+|.-||.++..|||++.++|||.|.+|+||-++-|..- ++ -|.++.
T Consensus 524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH-----KS-----~fAHdD 593 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH-----KS-----FFAHDD 593 (888)
T ss_pred EEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh-----hh-----hhcccC
Confidence 99999999999999888877788889999999999999999999999999999999876211 10 133455
Q ss_pred cEEEEecCCCCcccccccCCCccccCccccc--cCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCccc
Q 006909 496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN--LETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI 569 (626)
Q Consensus 496 ~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~ 569 (626)
.+..+.|.|....+++++.+. .++-|+. ++......+|-.-+..++.+|+|.++++++. |..|++|.-..
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~---kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh-D~sIRlwE~td 665 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDG---KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH-DKSIRLWERTD 665 (888)
T ss_pred ceeEEEEcccceeEEEecCcc---eEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC-CceeEeeeccC
Confidence 667888888877777777664 4677744 5666677888888999999999999999998 89999997654
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.3e-29 Score=234.20 Aligned_cols=244 Identities=22% Similarity=0.331 Sum_probs=198.8
Q ss_pred cccccccccc---cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCc
Q 006909 169 TALYTSQEIQ---AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV 245 (626)
Q Consensus 169 ~~~~~~~~l~---~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (626)
.+.++.+++. .....|.|+.+. ...+++|..|.+|+|||..+
T Consensus 182 ~Gr~~~~rinc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~--------------------------------- 226 (499)
T KOG0281|consen 182 CGRHLLQRINCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS--------------------------------- 226 (499)
T ss_pred ccceeeeeecCCcccCCceEEEEec--chhhhcccccCceEEecccc---------------------------------
Confidence 3444455543 245789999984 45799999999999999987
Q ss_pred eeecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEE
Q 006909 246 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF 324 (626)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l 324 (626)
...+..+.||++.|.|+.|.. ..+++||.|.+|+|||++++++++++ .|...|..+.|+ ++++
T Consensus 227 ------------~~c~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---ng~m 290 (499)
T KOG0281|consen 227 ------------LECLKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NGYM 290 (499)
T ss_pred ------------HHHHHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---CCEE
Confidence 455788999999999999864 38999999999999999999999887 688899999995 5899
Q ss_pred EEEeCCCcEEEEeCCCCeEEE----eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909 325 ISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 400 (626)
++++.|.++.+||+....-.. +.+|...|+.+.|+ .+++++++.|.+|++|++.+...... ..+|..
T Consensus 291 vtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRt-------l~gHkR 361 (499)
T KOG0281|consen 291 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRT-------LNGHKR 361 (499)
T ss_pred EEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehh-------hhcccc
Confidence 999999999999998755322 56899999999985 55999999999999999998765322 223446
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909 401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 477 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 477 (626)
.|.|+++.. +++++|+.|.+|++||+..+...-...+|..-|.++.|. .+.|++|+.||+|+|||+..+..+
T Consensus 362 GIAClQYr~---rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 362 GIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred cceehhccC---eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCC
Confidence 788887742 699999999999999987544333334488899999994 788999999999999999987443
No 52
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.1e-29 Score=220.10 Aligned_cols=240 Identities=20% Similarity=0.371 Sum_probs=206.4
Q ss_pred ccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 180 HKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 180 H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
-.+.+..++|+++. ..+++++.||+++|||... ..
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------------------------~s 94 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------------------------------PS 94 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------------------------------CC
Confidence 45779999999865 4788899999999999654 25
Q ss_pred CCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
.|++.++.|...|.++.|++-. .++++|.|++|++|+..-++.+.+|. |...|...+|+|..++.|+++|.|+++++
T Consensus 95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l 174 (311)
T KOG0277|consen 95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL 174 (311)
T ss_pred cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence 6899999999999999999753 78888999999999999999999995 88999999999999999999999999999
Q ss_pred EeCCC-CeEEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909 336 WGVCE-KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 336 wd~~~-~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
||++. ++.+.+..|...|.++.|+. +.+.+++|+.|+.|+.||+++.+.++..+. +|+-.|..++|||....
T Consensus 175 wdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~------gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 175 WDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN------GHGLAVRKVKFSPHHAS 248 (311)
T ss_pred EEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeec------CCceEEEEEecCcchhh
Confidence 99875 66666888889999999998 667889999999999999998887654443 34589999999998878
Q ss_pred EEEEEeCCCcEEEEeCCc---ceeeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEEC
Q 006909 414 RIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 414 ~l~~~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~ 471 (626)
.|++++.|-+++|||... .+.++. .|..-+..+.|++ ++.++|+++.|..++||+-
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999999652 233333 3888899999987 5679999999999999984
No 53
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-27 Score=217.65 Aligned_cols=275 Identities=21% Similarity=0.326 Sum_probs=217.7
Q ss_pred cccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 179 AHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 179 ~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
.-.+.|.+++||| ...+++.||.||+||+|++.....
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~------------------------------------------ 62 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ------------------------------------------ 62 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCc------------------------------------------
Confidence 3567899999999 445677899999999999986210
Q ss_pred CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCC--EEEEEeCCCcEE
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN--YFISGSIDGKVR 334 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~s~s~dg~v~ 334 (626)
..+ +....|.++|.+++|+.+| .+++|+.|+.+++||+.+++....-.|..+|.++.|-+ ... .|++||.|.+|+
T Consensus 63 ~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 63 LVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLK 140 (347)
T ss_pred ccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-CCCcceeEeccccccee
Confidence 111 4455799999999999998 89999999999999999998888778999999999987 555 799999999999
Q ss_pred EEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 335 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 335 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
.||++....+......+.+.++..- ...++++..+..|.+|++++.......+...- .-.+.|++..++. ..
T Consensus 141 fWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpL-----k~Q~R~va~f~d~-~~ 212 (347)
T KOG0647|consen 141 FWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPL-----KWQTRCVACFQDK-DG 212 (347)
T ss_pred ecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcc-----cceeeEEEEEecC-Cc
Confidence 9999999998888888888887754 34788999999999999987765544332221 2568899998886 46
Q ss_pred EEEEeCCCcEEEEeCCcc----eeeeeecCCC-------CCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC-CCCCCcc
Q 006909 415 IMITSEDSKLRILDGVDV----IHKFKGLPKS-------GSQMSASFTTTGKHIISIGDDCRVYVWNYDELC-FPSSKQK 482 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~~----~~~~~~~~~~-------~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~-~~~~~~~ 482 (626)
.+.|+-+|.+.|..+... ...|+.|... -.|++++|+|.-..|+|++.||++.+||-+... +......
T Consensus 213 ~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 213 FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 699999999999876643 2344444321 147889999999999999999999999987652 2232344
Q ss_pred CCccceeeeccCCcEEEEecCCC
Q 006909 483 NSVRSCEHFFSEGVSVAVQWPGI 505 (626)
Q Consensus 483 ~~~~~~~~~~~~g~~~av~~s~~ 505 (626)
...++|..|+.+|.++|.|.+-|
T Consensus 293 ~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 293 PQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CCccceeEecCCCCEEEEEeecc
Confidence 55677889999999988874433
No 54
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=4.2e-28 Score=221.16 Aligned_cols=234 Identities=21% Similarity=0.369 Sum_probs=186.7
Q ss_pred ccccccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCC
Q 006909 164 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 243 (626)
Q Consensus 164 ~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (626)
.....+..+....+..|++++.+.+|||||.++|||+.|.+|+|.|++..-..... ..+.....
T Consensus 95 ~~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~-------------~em~~~~~--- 158 (430)
T KOG0640|consen 95 GSSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP-------------KEMISGDT--- 158 (430)
T ss_pred cCCCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch-------------hhhccCCc---
Confidence 33344556677778899999999999999999999999999999999743211100 00000000
Q ss_pred CceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee---eEeecCCCCeEEEEEeeC
Q 006909 244 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPI 319 (626)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~~p~ 319 (626)
+.....++++..|..+|+++.|+|.. .|++++.|++|+++|+..... .+.|....+|.++.|+|
T Consensus 159 -----------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP- 226 (430)
T KOG0640|consen 159 -----------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP- 226 (430)
T ss_pred -----------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-
Confidence 00123478899999999999999976 899999999999999975433 34456778999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEE----eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc
Q 006909 320 DDNYFISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 395 (626)
Q Consensus 320 ~~~~l~s~s~dg~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 395 (626)
.|.+++.|..-.++++||+.+-++.. -..|.+.|+++.+++.|+..++++.||.|++||--++++....-..|+
T Consensus 227 sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-- 304 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-- 304 (430)
T ss_pred CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC--
Confidence 99999999999999999999987654 356788999999999999999999999999999877776544333444
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909 396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
+..|.+..|..+| +++++.+.|..+++|.+.+
T Consensus 305 ---gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 305 ---GSEVCSAVFTKNG-KYILSSGKDSTVKLWEIST 336 (430)
T ss_pred ---CceeeeEEEccCC-eEEeecCCcceeeeeeecC
Confidence 3789999999997 8999999999999998653
No 55
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=220.82 Aligned_cols=273 Identities=17% Similarity=0.241 Sum_probs=221.5
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeee-----------cCCCCC-ccCCCCCeeeecCC
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF-----------TDDGGF-GSNAKEGKIKFGKK 240 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~ 240 (626)
..-++.+|++.|+|+.||.||.+||||+.+|.|+||+..++....... .+.+.. .+...++.+-+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWm--- 174 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWM--- 174 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEE---
Confidence 455688999999999999999999999999999999999876655443 333332 22333333333
Q ss_pred CCCCceeecCCccccccC-CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEE
Q 006909 241 KSSHVPVVIPDEVFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQF 316 (626)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~ 316 (626)
|.+.. ...+.+.||..++++=.|.|+| +++++..||+|++||..+++++..+. ......++.+
T Consensus 175 -------------w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~ 241 (399)
T KOG0296|consen 175 -------------WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL 241 (399)
T ss_pred -------------EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccc
Confidence 33333 5567889999999999999999 89999999999999999999998885 3446788899
Q ss_pred eeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc---------CCCCeEEEE---EeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909 317 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---------VRDVISAIC---YIPDGKGFIVGSITGTCHFYKASGNDL 384 (626)
Q Consensus 317 ~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~i~~i~---~sp~g~~l~~g~~dg~i~i~d~~~~~~ 384 (626)
+. .+..++.|+.++.+++-+..+++++.... +...+.++. ++..=.+.|+|+.||+|.|||+.....
T Consensus 242 ~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~ 320 (399)
T KOG0296|consen 242 NL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL 320 (399)
T ss_pred cc-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh
Confidence 88 89999999999999999998888776443 233344444 444556889999999999999987654
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909 385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
.. ...|...|+.+.|-++ .+|++++.+|.|+.||.++....+...+|...|..++++|+.++++|+|.|+
T Consensus 321 R~--------~c~he~~V~~l~w~~t--~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 321 RH--------ICEHEDGVTKLKWLNT--DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred he--------eccCCCceEEEEEcCc--chheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 22 2233478999999994 5999999999999999999888888888999999999999999999999999
Q ss_pred cEEEEECC
Q 006909 465 RVYVWNYD 472 (626)
Q Consensus 465 ~I~iwd~~ 472 (626)
+.+||+.+
T Consensus 391 ~a~VF~v~ 398 (399)
T KOG0296|consen 391 TALVFEVP 398 (399)
T ss_pred eEEEEecC
Confidence 99999875
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=217.64 Aligned_cols=208 Identities=22% Similarity=0.370 Sum_probs=176.3
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC------------C------eeeEee-cCCCCeEEEEEeeCC
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------N------QCLNVF-DHHNYVTCVQFNPID 320 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~------------~------~~~~~~-~~~~~v~~~~~~p~~ 320 (626)
...+..|.+++.+.+|++|| ++++|+.|..|+|.|++. + -.++++ .|.++|+++.|+| .
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 45667899999999999999 889999999999999861 1 123444 5999999999999 9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe---EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccccc
Q 006909 321 DNYFISGSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 397 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 397 (626)
..+|++|+.|++|++||..... ..+......+|.+++|+|.|.+|++|+.-.++++||+.+.++-.... ....
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan----Pd~q 259 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN----PDDQ 259 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC----cccc
Confidence 9999999999999999987533 33455667889999999999999999999999999999887654422 2445
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
|.+.|+++.+++.| .+.++++.||.|+|||.- .++..+........|.++.|+.+|+||++.+.|..+++|.+.++
T Consensus 260 ht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 260 HTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 67899999999998 799999999999999965 45566665556678999999999999999999999999999886
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.2e-27 Score=222.33 Aligned_cols=253 Identities=18% Similarity=0.267 Sum_probs=212.0
Q ss_pred ccccccccccCcEEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDG---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg---~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
....++.||+++|.++++.-.. ..|++++.|.++++|.++.+...
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-------------------------------- 182 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-------------------------------- 182 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh--------------------------------
Confidence 3456788999999988875433 36999999999999998864321
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC-------------------------Ceee
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------------------------NQCL 302 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~-------------------------~~~~ 302 (626)
...++...||...|-++...+++ .+++||.|.+|+||+..+ +.++
T Consensus 183 ---------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 183 ---------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred ---------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 12234445999999999999988 999999999999999321 1122
Q ss_pred Eee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC
Q 006909 303 NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 381 (626)
Q Consensus 303 ~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~ 381 (626)
.++ +|..+|.++.|++ ...+++++.|.+|+.||+.++...........+++++++|..++|++|+.|..|++||.++
T Consensus 254 vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred EEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 233 5999999999985 7789999999999999999999998888889999999999999999999999999999998
Q ss_pred CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909 382 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISI 460 (626)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~ 460 (626)
+.-......+.+ |.+.|.++.|+|...+.|++++.|+++++||++... ..+....|...|.++.|. ++.+|++|
T Consensus 332 ~~gs~v~~s~~g----H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSG 406 (423)
T KOG0313|consen 332 GDGSVVSQSLIG----HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSG 406 (423)
T ss_pred CCCceeEEeeec----chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEec
Confidence 876555444444 458999999999988999999999999999999766 667777899999999996 57799999
Q ss_pred eCCccEEEEECC
Q 006909 461 GDDCRVYVWNYD 472 (626)
Q Consensus 461 s~dg~I~iwd~~ 472 (626)
+.|++|+|+.-.
T Consensus 407 GaD~~l~i~~~~ 418 (423)
T KOG0313|consen 407 GADNKLRIFKGS 418 (423)
T ss_pred cCcceEEEeccc
Confidence 999999999754
No 58
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=8.6e-27 Score=238.33 Aligned_cols=381 Identities=17% Similarity=0.186 Sum_probs=286.6
Q ss_pred ccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909 168 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 247 (626)
Q Consensus 168 ~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (626)
+..-.+..+++++...|+++.=+|--..+|.|..+|+|.|+++..
T Consensus 189 vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~----------------------------------- 233 (910)
T KOG1539|consen 189 VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF----------------------------------- 233 (910)
T ss_pred eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc-----------------------------------
Confidence 344567778899999999999999988999999999999999987
Q ss_pred ecCCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCE
Q 006909 248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~ 323 (626)
.+.+.+++...+.|+.++|..|| .+++|+..|.+.+||++..+.+.... |.+.|..+.|.| ....
T Consensus 234 ----------dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epV 302 (910)
T KOG1539|consen 234 ----------DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPV 302 (910)
T ss_pred ----------CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCce
Confidence 34456666446999999999888 78888889999999999888877764 888999999999 8889
Q ss_pred EEEEeCCCcEEEEeCCC--C--e-EEEeccCCCCeEEEEEe-eCCCEEEEEecCCcEEEEEcC-----------------
Q 006909 324 FISGSIDGKVRIWGVCE--K--R-VVDWADVRDVISAICYI-PDGKGFIVGSITGTCHFYKAS----------------- 380 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~--~--~-~~~~~~~~~~i~~i~~s-p~g~~l~~g~~dg~i~i~d~~----------------- 380 (626)
+++++.|+.+++|=..+ + + +....+|..+..++.|. .+|..+.+++.|++.+.|++.
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~ 382 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA 382 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence 99999999988884443 3 1 33356788888888887 577778888877766655542
Q ss_pred ------------------------------------------------CCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 381 ------------------------------------------------GNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 381 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
+...-...+. +.+.+.....+++++.++.|
T Consensus 383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~-~~~~~~~~~~~~av~vs~CG- 460 (910)
T KOG1539|consen 383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD-PKRFKKDDINATAVCVSFCG- 460 (910)
T ss_pred ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec-CccccccCcceEEEEEeccC-
Confidence 1111000000 00111134678899999998
Q ss_pred cEEEEEeCCCcEEEEeCCcceeeeee---cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCcccee
Q 006909 413 QRIMITSEDSKLRILDGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 489 (626)
Q Consensus 413 ~~l~~~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 489 (626)
++.+.|+..|.|-+|++...+..-.. ..|..+|++++....++.+++++.+|.+++||+.+.........+....+.
T Consensus 461 NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~i 540 (910)
T KOG1539|consen 461 NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGI 540 (910)
T ss_pred ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCccee
Confidence 79999999999999999877665444 468999999999999999999999999999999987544444444455555
Q ss_pred eeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCccc
Q 006909 490 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI 569 (626)
Q Consensus 490 ~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~ 569 (626)
..+.....+|++...-...++....- .-...+.+|+..+++++|||||+++++++. |++|++||+++
T Consensus 541 v~hr~s~l~a~~~ddf~I~vvD~~t~------------kvvR~f~gh~nritd~~FS~DgrWlisasm-D~tIr~wDlpt 607 (910)
T KOG1539|consen 541 VYHRVSDLLAIALDDFSIRVVDVVTR------------KVVREFWGHGNRITDMTFSPDGRWLISASM-DSTIRTWDLPT 607 (910)
T ss_pred eeeehhhhhhhhcCceeEEEEEchhh------------hhhHHhhccccceeeeEeCCCCcEEEEeec-CCcEEEEeccC
Confidence 55555555555544444444433221 122346788889999999999999999999 89999999999
Q ss_pred CCCCCCCChhhHHHHhh-hccCCccccccccccceEEEEecCC-ceEeeeeecC
Q 006909 570 DSDGYCQDPQQQRLQQQ-CLNNVDDVRAISATWGLVIVTAGCD-GMIKTFHNYG 621 (626)
Q Consensus 570 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~dg~~ivt~g~D-g~Irvw~~~g 621 (626)
+. +... .....+....++| +|++|||+..| .-|.+|-|-.
T Consensus 608 ~~-----------lID~~~vd~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 608 GT-----------LIDGLLVDSPCTSLSFSP-NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cc-----------eeeeEecCCcceeeEECC-CCCEEEEEEecCceEEEEEchh
Confidence 82 2222 2344455567778 79999999999 4599998854
No 59
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=212.10 Aligned_cols=310 Identities=19% Similarity=0.241 Sum_probs=214.5
Q ss_pred CccchhHhhhcccccccccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---------------cc
Q 006909 151 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV---------------AA 215 (626)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~---------------~~ 215 (626)
++.+..+..+.+.+...|.+.....+|++|.+.|++|+|+.||++|||++.|++|+||++... ..
T Consensus 56 kkk~hqr~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp 135 (420)
T KOG2096|consen 56 KKKKHQRNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHP 135 (420)
T ss_pred chhcccchhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCc
Confidence 344555666777777788888899999999999999999999999999999999999998752 12
Q ss_pred eeeeecCCCCCccC-C-CCCeeeecCC-CCCCceeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcE
Q 006909 216 SCKSFTDDGGFGSN-A-KEGKIKFGKK-KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTV 291 (626)
Q Consensus 216 ~~~~~~~~~~~~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v 291 (626)
....|.++...... . ....++.+.. .........+.- .....+--..|.-.|..+-...++ +|++++.|.+|
T Consensus 136 T~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v----~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i 211 (420)
T KOG2096|consen 136 TRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFV----HIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKI 211 (420)
T ss_pred eEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccc----cccccccchhcccceEEEeecCCceEEEEecCCCcE
Confidence 33445555443221 1 1122221111 000000000000 000111223466677777766666 89999999999
Q ss_pred EEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC---CC------eEEEeccCCCCeEEEEEeeC
Q 006909 292 RMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC---EK------RVVDWADVRDVISAICYIPD 361 (626)
Q Consensus 292 ~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~---~~------~~~~~~~~~~~i~~i~~sp~ 361 (626)
.+|++. |+.+..+. ....-+..+.+| +|+++++++..--|++|.+- .| ++..+.+|...|..++|+|+
T Consensus 212 ~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 212 CLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred EEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence 999999 88888886 333556778999 99999999999999999863 22 34568899999999999999
Q ss_pred CCEEEEEecCCcEEEEEcCCCceeee---EEe-eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce--ee
Q 006909 362 GKGFIVGSITGTCHFYKASGNDLKLE---KVD-FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HK 435 (626)
Q Consensus 362 g~~l~~g~~dg~i~i~d~~~~~~~~~---~~~-~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~--~~ 435 (626)
...+++.+.||++++||+.-....-+ .+. ........+.....+.++|.| .+++.+....++++..++.. ..
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g--~~lA~s~gs~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG--DSLAVSFGSDLKVFASEDGKDYPE 367 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC--cEEEeecCCceEEEEcccCccchh
Confidence 99999999999999999863221111 000 000011123444589999998 45556667889999866432 22
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 436 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 436 ~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
++ ..|...|.+++|+++|+++++++ |..+++..
T Consensus 368 ~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 368 LE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred HH-HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 22 23888999999999999999998 67787776
No 60
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=4.8e-28 Score=229.06 Aligned_cols=281 Identities=20% Similarity=0.360 Sum_probs=229.4
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
.....+..|.+.|..+.|-++...|+||+.|..|++|++...+
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k------------------------------------- 208 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK------------------------------------- 208 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-------------------------------------
Confidence 3445678999999999999998899999999999999987632
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
...+.++.|..+.|+.+.|.+++ ++++++.|+.+++|++...+...++ +|.+.|+++.|.. ....+++|+.
T Consensus 209 ------~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~ 281 (459)
T KOG0288|consen 209 ------SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSA 281 (459)
T ss_pred ------hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccc
Confidence 13467788888999999999887 8999999999999999999998888 4999999999987 5556999999
Q ss_pred CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
|.+|++||+....+....-....+..|+.+ ...+++|..|++|++||.++...... +.. ++.|+++..++
T Consensus 282 DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s-v~~-------gg~vtSl~ls~ 351 (459)
T KOG0288|consen 282 DRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS-VPL-------GGRVTSLDLSM 351 (459)
T ss_pred cchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeE-eec-------CcceeeEeecc
Confidence 999999999998887766666777777766 55788999999999999998776443 222 26899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCc--ceeeeeec--CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCc
Q 006909 410 DESQRIMITSEDSKLRILDGVD--VIHKFKGL--PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 485 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~~--~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 485 (626)
++ ..+++++.|.++.+.|+++ ....+... ......+.+.|||++.|+++||.||.|+||++.++.........
T Consensus 352 ~g-~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s-- 428 (459)
T KOG0288|consen 352 DG-LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS-- 428 (459)
T ss_pred CC-eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC--
Confidence 98 7888889999999999874 34444432 23345889999999999999999999999999987443333221
Q ss_pred cceeeeccCCcEEEEecCCCCcccccccCC
Q 006909 486 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSS 515 (626)
Q Consensus 486 ~~~~~~~~~g~~~av~~s~~~~~l~~~~~~ 515 (626)
+.+..+++++|+|.|..+...+.+
T Consensus 429 ------~s~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 429 ------TSNAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred ------CCCcceEEEEEcCCCchhhcccCC
Confidence 112257899999999988876664
No 61
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=5.2e-26 Score=225.35 Aligned_cols=244 Identities=26% Similarity=0.485 Sum_probs=204.8
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
....+.+|...|..+.|+|++++|++++.||.|++|++.+
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~---------------------------------------- 82 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET---------------------------------------- 82 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc----------------------------------------
Confidence 3455678999999999999999999999999999999986
Q ss_pred cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
...+..+..|...|.++.|++++ ++++++.|+.|.+||+.+++....+. |...+.+++|+| ++.++++++.+
T Consensus 83 -----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~ 156 (289)
T cd00200 83 -----GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQD 156 (289)
T ss_pred -----ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCC
Confidence 23456677888899999999987 66666669999999999888888776 888999999999 78888888889
Q ss_pred CcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 331 GKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 331 g~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
+.|++||+++++.. .+..+...+.+++|+|+++.+++++.+|.+++||+........ + ..+...+.++.|+|
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~------~~~~~~i~~~~~~~ 229 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT-L------RGHENGVNSVAFSP 229 (289)
T ss_pred CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc-h------hhcCCceEEEEEcC
Confidence 99999999876644 3556777999999999999999999999999999987544321 1 12346899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 410 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
++ .++++++.++.|++||............|...+.+++|+|++++|++++.|+.|++|+
T Consensus 230 ~~-~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 230 DG-YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CC-cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 95 6788888899999999875444444445778999999999999999999999999996
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.7e-27 Score=240.98 Aligned_cols=251 Identities=21% Similarity=0.420 Sum_probs=211.3
Q ss_pred cccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909 167 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 246 (626)
Q Consensus 167 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (626)
.+..-.+...+..|.|+|..++|+|++.++++||+|-.|+||+..+
T Consensus 37 DYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~---------------------------------- 82 (1202)
T KOG0292|consen 37 DYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT---------------------------------- 82 (1202)
T ss_pred hhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc----------------------------------
Confidence 3445567778899999999999999999999999999999999987
Q ss_pred eecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEE
Q 006909 247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF 324 (626)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l 324 (626)
..++.++.||-..|..+.|++.- .++|+|.|.+|+||+..++.++..+ +|...|.|.+|+| ....+
T Consensus 83 -----------rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlI 150 (1202)
T KOG0292|consen 83 -----------RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLI 150 (1202)
T ss_pred -----------ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceE
Confidence 45678899999999999999876 9999999999999999999999988 5999999999999 99999
Q ss_pred EEEeCCCcEEEEeCCCCe----------------------------EE--EeccCCCCeEEEEEeeCCCEEEEEecCCcE
Q 006909 325 ISGSIDGKVRIWGVCEKR----------------------------VV--DWADVRDVISAICYIPDGKGFIVGSITGTC 374 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~~~~----------------------------~~--~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i 374 (626)
+++|.|.+||+||+..-+ ++ .+.+|...|+-++|+|.-..+++|+.|..|
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence 999999999999985311 11 145788889999999999999999999999
Q ss_pred EEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcC
Q 006909 375 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTT 452 (626)
Q Consensus 375 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp 452 (626)
++|..+..+. +.. ...++|.+.|+++.|+|.. .++++.+.|++|+|||+. +.+++++. .....+.++-+|
T Consensus 231 KlWrmnetKa----WEv-DtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~v~tfrr--endRFW~laahP 302 (1202)
T KOG0292|consen 231 KLWRMNETKA----WEV-DTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTSVQTFRR--ENDRFWILAAHP 302 (1202)
T ss_pred eEEEeccccc----eee-hhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccccceeeeec--cCCeEEEEEecC
Confidence 9999875432 221 2255677999999999985 799999999999999976 45556654 567788888899
Q ss_pred CCCEEEEEeCCccEEEEECC
Q 006909 453 TGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 453 ~g~~l~s~s~dg~I~iwd~~ 472 (626)
..+++++|. |+-+.||.++
T Consensus 303 ~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 303 ELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred Ccceeeeec-CCceEEEEEc
Confidence 988777664 5556666665
No 63
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.2e-26 Score=210.63 Aligned_cols=269 Identities=19% Similarity=0.260 Sum_probs=210.0
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
-.+.|.+|.|+|.+..|+.++.||++++|++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---------------------------------------------- 45 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---------------------------------------------- 45 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch----------------------------------------------
Confidence 3578999999999999999999999999999862
Q ss_pred CceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909 260 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 339 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~ 339 (626)
.+.....|..++.+++|.++..+++|+.||.|+.+|+.++.....-.|..+|.|+..++ ..+.+++|++|++|++||.+
T Consensus 46 ~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 46 SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecc
Confidence 23333458999999999998899999999999999999998888888999999999999 88899999999999999999
Q ss_pred CCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909 340 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 419 (626)
Q Consensus 340 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s 419 (626)
.............|.++.. .|+.|++|+.+..+.+||+++....... +.......+.++++.|++ .=+++++
T Consensus 125 ~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~-----reS~lkyqtR~v~~~pn~-eGy~~sS 196 (323)
T KOG1036|consen 125 NKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR-----RESSLKYQTRCVALVPNG-EGYVVSS 196 (323)
T ss_pred ccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh-----ccccceeEEEEEEEecCC-CceEEEe
Confidence 8666666666668887765 5779999999999999999987765421 111223678999999975 5688999
Q ss_pred CCCcEEEEeCC------cceeeeeecCCC-------CCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCcc-CCc
Q 006909 420 EDSKLRILDGV------DVIHKFKGLPKS-------GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK-NSV 485 (626)
Q Consensus 420 ~dg~i~iwd~~------~~~~~~~~~~~~-------~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~ 485 (626)
-||.|.+=... .....|+.|... -+|++++|+|--..++||+.||.|.+||+.+.+.....+. ...
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~S 276 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETS 276 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCc
Confidence 99998875433 222334433211 2789999999999999999999999999987632222222 223
Q ss_pred cceeeeccCCcEEEEecC
Q 006909 486 RSCEHFFSEGVSVAVQWP 503 (626)
Q Consensus 486 ~~~~~~~~~g~~~av~~s 503 (626)
+..++|+.+|..+|++.+
T Consensus 277 I~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 277 ISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeccCCCeEEEEec
Confidence 444566666666666544
No 64
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=212.76 Aligned_cols=243 Identities=21% Similarity=0.341 Sum_probs=205.8
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
..-.+.+|.++|++++.+ |.|+|+||.|-+|+|||+..
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k---------------------------------------- 72 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK---------------------------------------- 72 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccc----------------------------------------
Confidence 344567999999999985 89999999999999999987
Q ss_pred cccccCCCceeeccCccceEEEEEcCCC---eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s 328 (626)
...+..+..|.+.|+++.|.+.- .|++|+.||.|.+|+.....++..+. |...|+.++.+| .+++.++.+
T Consensus 73 -----~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg 146 (362)
T KOG0294|consen 73 -----RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVG 146 (362)
T ss_pred -----hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEc
Confidence 34567777899999999999764 89999999999999999999999985 888999999999 999999999
Q ss_pred CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 329 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
.|+.+++||+-.++...........+.+.|+|.|.+++++..+ .|-+|.+.+...... +.. ...+.++.|-
T Consensus 147 ~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~-i~~-------~~r~l~~~~l 217 (362)
T KOG0294|consen 147 GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFRE-IEN-------PKRILCATFL 217 (362)
T ss_pred CCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhh-hhc-------cccceeeeec
Confidence 9999999999998887777777777789999999999998876 688898876654322 111 1457777776
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEE--cCCCCEEEEEeCCccEEEEECCCC
Q 006909 409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF--TTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.. ..+++|..|+.|.+||............|...|-++.+ .|++.+|+++|.||.|+|||++..
T Consensus 218 ~~--~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 218 DG--SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CC--ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 65 48999999999999998865555555668899988874 578899999999999999999865
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=5.2e-28 Score=214.29 Aligned_cols=286 Identities=21% Similarity=0.330 Sum_probs=236.7
Q ss_pred cccccccCcEEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 175 QEIQAHKGCIWTLKFSP---DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fsp---dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
.+..||+.+|..++||| +|-+|++++.||.-.+-+=++
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t--------------------------------------- 48 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT--------------------------------------- 48 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC---------------------------------------
Confidence 45679999999999986 788999999999776655444
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
+.-+.++.||.+.|+....+.+- +.++++.|-+.+|||.-+|..+..|.|..-|.+++|+. +.++|++|+.+
T Consensus 49 ------gdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~-ds~~lltgg~e 121 (334)
T KOG0278|consen 49 ------GDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQ-DSNYLLTGGQE 121 (334)
T ss_pred ------CCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecc-cchhhhccchH
Confidence 23478899999999999988776 77899999999999999999999999999999999999 99999999999
Q ss_pred CcEEEEeCCCC--eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 331 GKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 331 g~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
..+||||++.. .+..+.+|.+.|..+-|....+.+++++.|++||+||.+++.... .+.+. .+|+++.++
T Consensus 122 kllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~-sL~~~-------s~VtSlEvs 193 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQ-SLEFN-------SPVTSLEVS 193 (334)
T ss_pred HHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEE-EEecC-------CCCcceeec
Confidence 99999999764 456688999999999999999999999999999999999987643 33332 689999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccce
Q 006909 409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC 488 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 488 (626)
++| .+++....+.|.+||..... .++...-...|.+.+.+|+...+++|++|..++.||+.++.....
T Consensus 194 ~dG--~ilTia~gssV~Fwdaksf~-~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--------- 261 (334)
T KOG0278|consen 194 QDG--RILTIAYGSSVKFWDAKSFG-LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--------- 261 (334)
T ss_pred cCC--CEEEEecCceeEEecccccc-ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee---------
Confidence 997 67888888999999976432 222222457899999999999999999999999999998621100
Q ss_pred eeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909 489 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT 568 (626)
Q Consensus 489 ~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~ 568 (626)
+ ..++-.+|..+.|||||...++++. ||+|++|...
T Consensus 262 -------------~------------------------------nkgh~gpVhcVrFSPdGE~yAsGSE-DGTirlWQt~ 297 (334)
T KOG0278|consen 262 -------------Y------------------------------NKGHFGPVHCVRFSPDGELYASGSE-DGTIRLWQTT 297 (334)
T ss_pred -------------c------------------------------ccCCCCceEEEEECCCCceeeccCC-CceEEEEEec
Confidence 0 1234445777788888888888888 8999999777
Q ss_pred cC
Q 006909 569 ID 570 (626)
Q Consensus 569 ~~ 570 (626)
.+
T Consensus 298 ~~ 299 (334)
T KOG0278|consen 298 PG 299 (334)
T ss_pred CC
Confidence 65
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=4e-26 Score=257.78 Aligned_cols=244 Identities=16% Similarity=0.234 Sum_probs=198.4
Q ss_pred ccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 180 HKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 180 H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
+...|.+++|+|. +.+||+|+.||+|+|||+.+ .
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~---------------------------------------------~ 565 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR---------------------------------------------S 565 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC---------------------------------------------C
Confidence 3467899999874 78999999999999999986 3
Q ss_pred CCceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
..+..+.+|...|++++|+| ++ +|++|+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.||.|++|
T Consensus 566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iw 645 (793)
T PLN00181 566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYY 645 (793)
T ss_pred eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 34667789999999999996 55 89999999999999999999988888778899999976579999999999999999
Q ss_pred eCCCCe--EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 337 GVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 337 d~~~~~--~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
|++... ...+.+|...|.++.|. ++.++++++.|++|++||+.......... .......|...+..+.|+|++ .+
T Consensus 646 D~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~-~l~~~~gh~~~i~~v~~s~~~-~~ 722 (793)
T PLN00181 646 DLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET-PLHSFMGHTNVKNFVGLSVSD-GY 722 (793)
T ss_pred ECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc-ceEEEcCCCCCeeEEEEcCCC-CE
Confidence 998754 34567899999999997 78899999999999999997532110000 000123345788999999997 79
Q ss_pred EEEEeCCCcEEEEeCCccee--eee-----------ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 415 IMITSEDSKLRILDGVDVIH--KFK-----------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~~~~--~~~-----------~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
|++|+.|+.|++|+...... .+. ...+...|.+++|+|++.+|++|+.||.|+||++
T Consensus 723 lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 723 IATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999999653211 111 1224457999999999999999999999999986
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=5.1e-27 Score=227.67 Aligned_cols=255 Identities=21% Similarity=0.344 Sum_probs=198.0
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
-.|++|+..|.++++.|.|..|+|||.|.+|++||+..+......|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~f---------------------------------- 206 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSF---------------------------------- 206 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhh----------------------------------
Confidence 3477999999999999999999999999999999998754432211
Q ss_pred cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe-------------ecCCCCeEEEEEeeCC
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-------------FDHHNYVTCVQFNPID 320 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~-------------~~~~~~v~~~~~~p~~ 320 (626)
. .........|+++.|++.+ .|++.+.....+|+|-...+.... -+|...++|.+|+|.+
T Consensus 207 ----r--~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~ 280 (641)
T KOG0772|consen 207 ----R--QLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN 280 (641)
T ss_pred ----h--ccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc
Confidence 1 1112345679999999987 777777778899999765544332 2488899999999988
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe----EEE---eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc
Q 006909 321 DNYFISGSIDGKVRIWGVCEKR----VVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 393 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~~~~----~~~---~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~ 393 (626)
.+.|++++.||++|+||+...+ ++. ..+.+-++++++|+|+|+.||+|+.||.|.+|+..+.........
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v--- 357 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV--- 357 (641)
T ss_pred ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe---
Confidence 8899999999999999997532 222 123345789999999999999999999999999855433222111
Q ss_pred ccccC--CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc---ceeeeeecCCCCCeEEEEEcCCCCEEEEEeC------
Q 006909 394 RKKTS--GNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIGD------ 462 (626)
Q Consensus 394 ~~~~~--~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~------ 462 (626)
...| +..|+||.||++| ++|++-+.|+++++||+++ ++....+....-+-+.++|||+.++|++|+.
T Consensus 358 -k~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 358 -KDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT 435 (641)
T ss_pred -eeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCC
Confidence 2223 3489999999998 8999999999999999885 4444555556667789999999999999864
Q ss_pred CccEEEEECCCC
Q 006909 463 DCRVYVWNYDEL 474 (626)
Q Consensus 463 dg~I~iwd~~~~ 474 (626)
.|++++||..+.
T Consensus 436 ~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 436 AGTLFFFDRMTL 447 (641)
T ss_pred CceEEEEeccce
Confidence 478999998775
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.9e-27 Score=225.01 Aligned_cols=248 Identities=21% Similarity=0.365 Sum_probs=208.2
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
..+++.-.+..|.+++|-.||++||+|...|.|+|+|..+
T Consensus 60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~---------------------------------------- 99 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS---------------------------------------- 99 (487)
T ss_pred hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----------------------------------------
Confidence 3444556778999999999999999999999999999654
Q ss_pred cccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
...+..+.+|+.+|..+.|+|.+ .|++|+.|+.+++||+.+......+ +|+++|.|.+|+|.++.+++||+.
T Consensus 100 -----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 100 -----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred -----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence 23467888999999999999965 7889999999999999988864344 599999999999988889999999
Q ss_pred CCcEEEEeCCCC-eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 330 DGKVRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 330 dg~v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
||+|++||++.. ..+....|..+|..+.+-|.|..+++++ ...+++||+.++...... ...|...|||+.+.
T Consensus 175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~------~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTS------MFNHNKTVTCLRLA 247 (487)
T ss_pred CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhh------hhcccceEEEEEee
Confidence 999999999987 6677889999999999999999888876 458999999966544331 22245799999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.++ ..|++++-|+.|++||+.+..... .....++|.+++.+|+++.++.|..||.+.+=+....
T Consensus 248 s~~-~rLlS~sLD~~VKVfd~t~~Kvv~-s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 248 SDS-TRLLSGSLDRHVKVFDTTNYKVVH-SWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred cCC-ceEeecccccceEEEEccceEEEE-eeecccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 987 799999999999999966543333 3346789999999999999999999998887755443
No 69
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-25 Score=222.98 Aligned_cols=248 Identities=15% Similarity=0.260 Sum_probs=203.2
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
-..+|++|+|+.+.+.||.+-.||.|-||++... .-
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--------------------------------------------w~ 59 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--------------------------------------------WF 59 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC--------------------------------------------ce
Confidence 4678999999999999999999999999999862 22
Q ss_pred CceeeccC-ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 260 PLQELHGH-KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 260 ~~~~~~~h-~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
....+.++ ...|.+++|++.+.|++.+.+|.|.-||+.+++....+. ..+.|++++.+| .+..++.|+.||.+..++
T Consensus 60 ~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFS 138 (691)
T ss_pred eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEe
Confidence 23445554 568999999998999999999999999999999988886 677999999999 889999999999888888
Q ss_pred CCCCeEEE---eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCc
Q 006909 338 VCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 338 ~~~~~~~~---~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
...+.+.. +...++.|.+++|+|++..++.|+.||.|++||...+..... .....+..+....-|.++.|-.++
T Consensus 139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-- 216 (691)
T KOG2048|consen 139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-- 216 (691)
T ss_pred cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--
Confidence 87777654 334468899999999999999999999999999988765442 222222222234567888888885
Q ss_pred EEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 414 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 414 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.|++|...|+|.+||.......-....|.+.|.+++.++++.++++++.|+.|.-+...+.
T Consensus 217 tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 8999999999999997644333333348899999999999999999999999998887765
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=5.1e-27 Score=209.50 Aligned_cols=286 Identities=22% Similarity=0.298 Sum_probs=219.2
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
+.+.+|...|.+++|+-+| .|++|+.|+++.+|+++..+..... +|.+.|-.++|+|..++.|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5677899999999999988 9999999999999999877555444 48889999999998999999999999999999
Q ss_pred CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909 338 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 417 (626)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~ 417 (626)
.+.+++......+..-.-+.|+|+|.+++++..|..|.+.|.++.+.... ..+ ...+..++|+.++ .+++.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~-~~~-------~~e~ne~~w~~~n-d~Ffl 164 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE-EQF-------KFEVNEISWNNSN-DLFFL 164 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh-hcc-------cceeeeeeecCCC-CEEEE
Confidence 99999888777777777899999999999999999999999988765432 111 1457778888765 67777
Q ss_pred EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcE
Q 006909 418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS 497 (626)
Q Consensus 418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~ 497 (626)
....|+|.|..............|.....++.|+|+|+|+|+|+.|..+.+||++... |+..
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi------------C~R~------ 226 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI------------CERC------ 226 (313)
T ss_pred ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh------------hhee------
Confidence 7778999999876655555555688999999999999999999999999999998741 1000
Q ss_pred EEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCC
Q 006909 498 VAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQD 577 (626)
Q Consensus 498 ~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 577 (626)
+.-.+=+|..+.||.||++||+|+. |.-|-|=++++|.
T Consensus 227 -----------------------------------isRldwpVRTlSFS~dg~~lASaSE-Dh~IDIA~vetGd------ 264 (313)
T KOG1407|consen 227 -----------------------------------ISRLDWPVRTLSFSHDGRMLASASE-DHFIDIAEVETGD------ 264 (313)
T ss_pred -----------------------------------eccccCceEEEEeccCcceeeccCc-cceEEeEecccCC------
Confidence 1112224667778888888888888 6777777777772
Q ss_pred hhhHHHHhhhccCCccc--cccccccceEEEEecCCceE------eeeeecCcc
Q 006909 578 PQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMI------KTFHNYGLP 623 (626)
Q Consensus 578 ~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~I------rvw~~~g~p 623 (626)
+.- -.++.+.. +++.| ...+||-|.+|..= -..++||||
T Consensus 265 ----~~~--eI~~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 265 ----RVW--EIPCEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ----eEE--EeeccCCceeEEecC-CCceeeEEecCCCCccccccceeEEecCC
Confidence 111 11222222 34445 46677777766322 445567777
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=6.2e-27 Score=221.57 Aligned_cols=248 Identities=19% Similarity=0.260 Sum_probs=213.1
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
.....+|.|-.++|++++|.++++++++++.|+.+++|++.+
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-------------------------------------- 250 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-------------------------------------- 250 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc--------------------------------------
Confidence 345678889999999999999999999999999999999987
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
....+++.||+..|+++.|.... .+++|+.|.+|++||+....|.+++-....+..|..+ ...+++|-.
T Consensus 251 -------~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~ 320 (459)
T KOG0288|consen 251 -------LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHF 320 (459)
T ss_pred -------hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeeccc
Confidence 45578999999999999998766 5999999999999999999999998878888888875 478999999
Q ss_pred CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
|++|++||.++..........+.|+++..+++|..+.+++.|.++.+.|+++...... ....+.+.+ ...+.+.|||
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~-~sA~g~k~a--sDwtrvvfSp 397 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT-FSAEGFKCA--SDWTRVVFSP 397 (459)
T ss_pred ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEE-eeccccccc--cccceeEECC
Confidence 9999999999999988888888999999999999999999999999999998875432 333332222 3489999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCcceeeee--ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 410 DESQRIMITSEDSKLRILDGVDVIHKFK--GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
++ .|+++|+.||.|+||++.+...... .......|++++|+|.|.++++++.++.+.+|.
T Consensus 398 d~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 398 DG-SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CC-ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 98 7999999999999999875444443 333333699999999999999999999999993
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=3e-26 Score=205.25 Aligned_cols=232 Identities=16% Similarity=0.205 Sum_probs=190.7
Q ss_pred eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909 263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~ 340 (626)
.+.||..+++.+.++.+| +|++|+.|.++.||-..+|+.+.++ +|.+.|+|+..+. +..++++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 467899999999999988 9999999999999999899999988 5999999999998 899999999999999999999
Q ss_pred CeEEEeccCCCCeEEEEEeeCCCEEEEEec-----CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 341 KRVVDWADVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 341 ~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
|+++.......+|..+.|+++|++++..+. .+.|.++|++........-........+...++.+.|.|-+ ..|
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~i 162 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETI 162 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC-CEE
Confidence 999999999999999999999998887764 36899999985432111000000122334789999999997 799
Q ss_pred EEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccC
Q 006909 416 MITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE 494 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 494 (626)
++|..||.|.+||.++....... ..|...|+.+.+++|..++++++.|.+-++||..+...........+..+.+++|-
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~ 242 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPL 242 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccc
Confidence 99999999999999876444433 55788999999999999999999999999999998755544445555555566654
Q ss_pred Cc
Q 006909 495 GV 496 (626)
Q Consensus 495 g~ 496 (626)
..
T Consensus 243 ~d 244 (327)
T KOG0643|consen 243 LD 244 (327)
T ss_pred cc
Confidence 33
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=209.80 Aligned_cols=253 Identities=18% Similarity=0.308 Sum_probs=215.2
Q ss_pred ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
.+.+.++|.||++.|+.++.......+.+++.|.+.+||.+++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es------------------------------------- 179 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES------------------------------------- 179 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-------------------------------------
Confidence 4567888999999999999988778999999999999999998
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEecc------CCC-----------------------
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV------GCN----------------------- 299 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~------~~~----------------------- 299 (626)
+.++.++.||.+.|++++|++++ ++++++.|++.+||.. ..+
T Consensus 180 --------g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d 251 (481)
T KOG0300|consen 180 --------GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD 251 (481)
T ss_pred --------ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence 45678899999999999999998 7889999999999962 110
Q ss_pred -----------eeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEE
Q 006909 300 -----------QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFI 366 (626)
Q Consensus 300 -----------~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~ 366 (626)
.++..+ +|...|.+..|.. .++.+++++.|.+..+||+.+++++. +.+|....+.++-+|..++++
T Consensus 252 ~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVv 330 (481)
T KOG0300|consen 252 SSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVV 330 (481)
T ss_pred cccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEE
Confidence 011122 4778899999998 99999999999999999999999876 678999999999999999999
Q ss_pred EEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeE
Q 006909 367 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM 446 (626)
Q Consensus 367 ~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 446 (626)
+++.|.+.++||++..-... .. ..+|...|+++.|..+. .+++|+.|.+|+|||+++....+.......+++
T Consensus 331 TsSrDtTFRLWDFReaI~sV--~V----FQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N 402 (481)
T KOG0300|consen 331 TSSRDTTFRLWDFREAIQSV--AV----FQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN 402 (481)
T ss_pred EeccCceeEeccchhhccee--ee----ecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence 99999999999998433222 22 33456899999999984 899999999999999988776666665678999
Q ss_pred EEEEcCCCCEEEEEeCCccEEEEECCCCCC
Q 006909 447 SASFTTTGKHIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 447 ~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 476 (626)
.++.+..++.|+.--++..|++||++....
T Consensus 403 Rvavs~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 403 RVAVSKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred eeEeecCCceEEeccCCceEEEEecCCCcc
Confidence 999998888999999999999999998743
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=5e-26 Score=213.33 Aligned_cols=264 Identities=20% Similarity=0.317 Sum_probs=213.6
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
-|.+.|.++... +++++||+.||.++|||...
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G---------------------------------------------- 134 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---------------------------------------------- 134 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCC----------------------------------------------
Confidence 499999999987 77999999999999999863
Q ss_pred CCceeeccCccceEEEEEcC-C---CeEEEEeCCCcEEEeccCCCeeeEee-----cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909 259 SPLQELHGHKGDVLDLAWSN-S---NYLLSCSMDKTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~-~---~~l~s~s~d~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
+....+.||.++|.+++|.. + ..|++++.|.++++|.++.+...... +|...|-++...+ ++..+++|+.
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~ 213 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSW 213 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecc
Confidence 56788899999999999863 3 26999999999999998876543221 6999999999999 9999999999
Q ss_pred CCcEEEEeCCCC--------------------------eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc
Q 006909 330 DGKVRIWGVCEK--------------------------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 383 (626)
Q Consensus 330 dg~v~iwd~~~~--------------------------~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~ 383 (626)
|.+|.||+.... .++.+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.
T Consensus 214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 999999993210 1445778999999999988 6689999999999999999887
Q ss_pred eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc---ceeeeeecCCCCCeEEEEEcCCC-CEEEE
Q 006909 384 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTG-KHIIS 459 (626)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~g-~~l~s 459 (626)
...... + ...+.++.++|.. .+|++|+.|..|++||.++ ........+|...|.++.|+|.. .+|++
T Consensus 293 ~~~~~~---~-----~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 293 LKSTLT---T-----NKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred ceeeee---c-----CcceeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence 654322 1 2689999999985 8999999999999999773 23344445688999999999976 45789
Q ss_pred EeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccc
Q 006909 460 IGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK 510 (626)
Q Consensus 460 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~ 510 (626)
|+.|+++++||+++...+... + -.++..++++.|+..+..+.
T Consensus 364 ~S~D~t~klWDvRS~k~plyd--------I-~~h~DKvl~vdW~~~~~IvS 405 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTKAPLYD--------I-AGHNDKVLSVDWNEGGLIVS 405 (423)
T ss_pred EecCCeEEEEEeccCCCccee--------e-ccCCceEEEEeccCCceEEe
Confidence 999999999999985323222 1 12367789999998765543
No 75
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.9e-25 Score=231.23 Aligned_cols=256 Identities=17% Similarity=0.205 Sum_probs=190.3
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
|-..|+....++++..+++++.+.....|+...+... ......+. . ..
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v-~~~~~~G~------------------------------~-~~ 66 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV-LKHTDYGK------------------------------L-AS 66 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEE-eecccccc------------------------------C-CC
Confidence 4456777788889888888888998899987653210 00000000 0 11
Q ss_pred CceeeccCccceEEEEEcC-CC-eEEEEeCCCcEEEeccCCCe-------eeEee-cCCCCeEEEEEeeCCCCEEEEEeC
Q 006909 260 PLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~-------~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
....+.+|.+.|++++|+| ++ +|++|+.|++|++||+.++. ++..+ .|...|.+++|+|..+++|++|+.
T Consensus 67 ~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 67 NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 1234779999999999999 55 89999999999999997652 34444 588999999999944579999999
Q ss_pred CCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 330 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 330 dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
|++|+|||+.+++... +..|...|.+++|+|+|..|++++.|+.|++||++++.... .+..+. ...+..+.|.
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~-tl~~H~-----~~~~~~~~w~ 220 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS-SVEAHA-----SAKSQRCLWA 220 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE-EEecCC-----CCcceEEEEc
Confidence 9999999999877654 55688999999999999999999999999999999876532 222222 1334567888
Q ss_pred CCCCcEEEEEe----CCCcEEEEeCCcceeeeee--cCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909 409 RDESQRIMITS----EDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 474 (626)
Q Consensus 409 ~~~~~~l~~~s----~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~ 474 (626)
+++ ..+++++ .|+.|++||+++....+.. ......+....|++++++|++++ .|+.|++||+.++
T Consensus 221 ~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 221 KRK-DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCC-CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 886 4555543 4799999998754333322 22334566678999999999887 4999999999876
No 76
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.4e-25 Score=232.74 Aligned_cols=234 Identities=18% Similarity=0.251 Sum_probs=181.7
Q ss_pred ccccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 176 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 176 ~l~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
.+.+|++.|++++|+| ++++||+|+.||+|+|||+.+.....
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~------------------------------------- 112 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ------------------------------------- 112 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-------------------------------------
Confidence 4679999999999999 88999999999999999997631100
Q ss_pred cccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
....++..+.+|...|.+++|+|++ +|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|+
T Consensus 113 -~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg 190 (493)
T PTZ00421 113 -NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDK 190 (493)
T ss_pred -ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCC
Confidence 0124567889999999999999963 89999999999999999998888875 888999999999 999999999999
Q ss_pred cEEEEeCCCCeEEE-eccCCCC-eEEEEEeeCCCEEEEEe----cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909 332 KVRIWGVCEKRVVD-WADVRDV-ISAICYIPDGKGFIVGS----ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 332 ~v~iwd~~~~~~~~-~~~~~~~-i~~i~~sp~g~~l~~g~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
+|++||+++++.+. ...|... +..+.|.+++..+++++ .|+.|++||++............. ...+...
T Consensus 191 ~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-----~~~~~~~ 265 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-----SSALFIP 265 (493)
T ss_pred EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC-----CCceEEE
Confidence 99999999887654 4456543 45678889888877654 478999999987654433222221 2456667
Q ss_pred EEcCCCCcEEEEEe-CCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcCCC
Q 006909 406 QFSRDESQRIMITS-EDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTG 454 (626)
Q Consensus 406 ~~s~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g 454 (626)
.|++++ .++++++ .|+.|++||+.+....+.. .....++..++|.|.-
T Consensus 266 ~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 266 FFDEDT-NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEcCCC-CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 789997 5677666 6999999998754433222 2245567888888853
No 77
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.5e-27 Score=220.66 Aligned_cols=247 Identities=19% Similarity=0.320 Sum_probs=191.3
Q ss_pred ccccccccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 174 SQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
...|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--------------------------------------- 99 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--------------------------------------- 99 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---------------------------------------
Confidence 34468999999999999987 68999999999999999873
Q ss_pred cccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEE--------------------------------------Ee
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR--------------------------------------MW 294 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~--------------------------------------iw 294 (626)
.+..++..|.+.|..|++.. +.+++++.|++|+ ||
T Consensus 100 ------~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IW 172 (433)
T KOG0268|consen 100 ------ECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIW 172 (433)
T ss_pred ------hhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeec
Confidence 23344444555555555443 3444444555444 45
Q ss_pred ccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCc
Q 006909 295 QVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGT 373 (626)
Q Consensus 295 d~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~ 373 (626)
|.....++..+. ....|.++.|+|....+|+++..|+.|.+||++++.++...-..-.-+.|+|+|.+-.+++|+.|..
T Consensus 173 D~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~n 252 (433)
T KOG0268|consen 173 DEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHN 252 (433)
T ss_pred ccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeecccccc
Confidence 544444455554 4456899999998888999999999999999999988877767777889999999999999999999
Q ss_pred EEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcC
Q 006909 374 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTT 452 (626)
Q Consensus 374 i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp 452 (626)
++.||++.-..+... ...|...|.++.|+|.| +-+++|+.|.+|+||........-.. ......|.++.||.
T Consensus 253 lY~~DmR~l~~p~~v------~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~ 325 (433)
T KOG0268|consen 253 LYTYDMRNLSRPLNV------HKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM 325 (433)
T ss_pred ceehhhhhhcccchh------hcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec
Confidence 999999876655432 23456899999999998 78999999999999997643322111 11346799999999
Q ss_pred CCCEEEEEeCCccEEEEECCC
Q 006909 453 TGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 453 ~g~~l~s~s~dg~I~iwd~~~ 473 (626)
|.+||++||+|+.|++|....
T Consensus 326 Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 326 DSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred cccEEEecCCCcceeeeecch
Confidence 999999999999999998764
No 78
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=5e-25 Score=231.18 Aligned_cols=240 Identities=16% Similarity=0.225 Sum_probs=181.5
Q ss_pred cccccccccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 173 TSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
....+.+|.+.|++++|+|+ +.+||||+.||+|+|||+.+......
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--------------------------------- 112 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--------------------------------- 112 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---------------------------------
Confidence 34567899999999999997 78999999999999999975311000
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
....++..+.+|...|.+++|+|++ .|++++.|++|+|||+.+++.+..+.|...|.+++|+| ++.+|++++.
T Consensus 113 ----~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~ 187 (568)
T PTZ00420 113 ----EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCV 187 (568)
T ss_pred ----ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEec
Confidence 0013456678999999999999986 46799999999999999998887777888999999999 9999999999
Q ss_pred CCcEEEEeCCCCeEEE-eccCCCCeEEE-----EEeeCCCEEEEEecCC----cEEEEEcCCCceeeeEEeeccccccCC
Q 006909 330 DGKVRIWGVCEKRVVD-WADVRDVISAI-----CYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKKTSG 399 (626)
Q Consensus 330 dg~v~iwd~~~~~~~~-~~~~~~~i~~i-----~~sp~g~~l~~g~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~ 399 (626)
|+.|+|||+++++.+. +..|.+.+.+. .|++++.+|++++.++ .|++||++....+......... .
T Consensus 188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~----~ 263 (568)
T PTZ00420 188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA----S 263 (568)
T ss_pred CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC----c
Confidence 9999999999987654 55676654332 3458889999988774 7999999965444433333221 2
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCC
Q 006909 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGK 455 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~ 455 (626)
+.+...-..++| .++++|+.|+.|++|++... ...+....+..++.+++|.|...
T Consensus 264 ~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 264 APLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred cceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 333333334444 78999999999999997643 22333334667888999999653
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.1e-26 Score=226.72 Aligned_cols=247 Identities=20% Similarity=0.397 Sum_probs=203.6
Q ss_pred ccCcEE---EEEEc-CCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 180 HKGCIW---TLKFS-PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 180 H~~~V~---~l~fs-pdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
|...|. .+..+ |.++||.|||.||.|++|++.......
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~-------------------------------------- 61 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP-------------------------------------- 61 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc--------------------------------------
Confidence 445555 44444 467799999999999999987521100
Q ss_pred ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC--eeeEeec-CCCCeEEEEE-eeCCCCEEEEEeCC
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFD-HHNYVTCVQF-NPIDDNYFISGSID 330 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~--~~~~~~~-~~~~v~~~~~-~p~~~~~l~s~s~d 330 (626)
+......++.|...|++++...++ .|+++|.|-+|++|+...+ -|+.+++ |.++|.|+++ .+ +...+|+|+.|
T Consensus 62 -s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD 139 (735)
T KOG0308|consen 62 -STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLD 139 (735)
T ss_pred -ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCC
Confidence 012366788899999999998877 8999999999999999877 5666675 9999999999 55 88999999999
Q ss_pred CcEEEEeCCCCeE--E---------Eec-cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccC
Q 006909 331 GKVRIWGVCEKRV--V---------DWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 398 (626)
Q Consensus 331 g~v~iwd~~~~~~--~---------~~~-~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 398 (626)
+.|.+||+.++.. + ... ++...|++++.++.|..++.|+..+.+++||.++...... .++|
T Consensus 140 ~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk-------LrGH 212 (735)
T KOG0308|consen 140 RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK-------LRGH 212 (735)
T ss_pred ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee-------eecc
Confidence 9999999997622 1 122 6788999999999999999999999999999998766443 2345
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
...|..+..++|| ..+++++.||+|++||+...........|...|.++..+|+-.++++|+.||.|+.=|+.+.
T Consensus 213 TdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 213 TDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 6899999999998 79999999999999999865555555558888999999999999999999999999999874
No 80
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=9.8e-27 Score=206.21 Aligned_cols=244 Identities=18% Similarity=0.288 Sum_probs=206.4
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
.-++.||+++|++..+..+....|+++.|-+-+|||..++
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg---------------------------------------- 91 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG---------------------------------------- 91 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh----------------------------------------
Confidence 3467899999999999999989999999999999998874
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee-eEee-cCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-LNVF-DHHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
..++.+. |..-|..++|+.|. +|++|+.++.++|+|++..+. ...+ +|++.|..+.|.. ..+.|++.+.|
T Consensus 92 -----delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd 164 (334)
T KOG0278|consen 92 -----DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADD 164 (334)
T ss_pred -----hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccC
Confidence 3345553 88899999999876 999999999999999976433 2333 5999999999998 88889998999
Q ss_pred CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
++||+||.+++..+.....+.+|+++.++++|++|.++ ..+.|.+||..+..... ...+ ...|.+..++|+
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lK-s~k~-------P~nV~SASL~P~ 235 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLK-SYKM-------PCNVESASLHPK 235 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEecccccccee-eccC-------ccccccccccCC
Confidence 99999999999999999999999999999999876655 56789999998766532 2222 267899999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
. ..+++|+.|..++.||..+....-. ...|.++|.++.|+|+|...++||+||+|++|....+
T Consensus 236 k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 236 K-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred C-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 6 7999999999999999775544433 2558899999999999999999999999999998764
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=214.58 Aligned_cols=292 Identities=19% Similarity=0.275 Sum_probs=227.7
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
.+.+..|.-+|+||+++|+.++.++++.||+|.=|++.++......+..+ .+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~----------------------------ev 186 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD----------------------------EV 186 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc----------------------------hh
Confidence 45667899999999999999999999999999999998865321111000 00
Q ss_pred ccccCCCceee-ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 254 FQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 254 ~~~~~~~~~~~-~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
....+.+...- .+|...|.+++.++|| +|++|+.|..|.||+..+.+.++.+ .|.+.|.+++|-. ..+.+++++.|
T Consensus 187 ~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~D 265 (479)
T KOG0299|consen 187 LKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASAD 265 (479)
T ss_pred hhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecC
Confidence 00012222222 4899999999999998 9999999999999999999999997 5999999999998 88899999999
Q ss_pred CcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 331 GKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 331 g~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
++|++|++.....+ .+.+|++.|..|....-++.+-+|+.|+++++|++....... ..++.+.+-|++|-.
T Consensus 266 rsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli--------frg~~~sidcv~~In 337 (479)
T KOG0299|consen 266 RSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI--------FRGGEGSIDCVAFIN 337 (479)
T ss_pred CceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceee--------eeCCCCCeeeEEEec
Confidence 99999999876544 578999999999999889888899999999999995443322 223357899999998
Q ss_pred CCCcEEEEEeCCCcEEEEeCCcceeeeee--c----------CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909 410 DESQRIMITSEDSKLRILDGVDVIHKFKG--L----------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 477 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--~----------~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 477 (626)
+ ..+++|+.+|.|.+|++.+....+.. . .+..+|++++..|...++++|+.+|.|++|.+..+...
T Consensus 338 ~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 338 D--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred c--cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 8 48999999999999997643333321 1 12238999999999999999999999999999987321
Q ss_pred CCCccCCccceeeeccCCcEEEEecCCCCccccc
Q 006909 478 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS 511 (626)
Q Consensus 478 ~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~ 511 (626)
. ......+-.|.+.+++|+++|..++.
T Consensus 416 i-------~~l~~ls~~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 416 I-------NLLYSLSLVGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred c-------ceeeecccccEEEEEEEccCCCEEEE
Confidence 1 11122334677888888888885554
No 82
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=1.9e-25 Score=224.17 Aligned_cols=433 Identities=18% Similarity=0.225 Sum_probs=290.1
Q ss_pred cccccccccCcEEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCcceeee-----------ecCCCCC-ccCCCCCeeee
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKS-----------FTDDGGF-GSNAKEGKIKF 237 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~---~Latgs~Dg~i~iwd~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~ 237 (626)
...++.||.++|+|+.|-|+.+ ++++|+.||.|++|.+......++. +...... .+.++++.+..
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v 125 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSV 125 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEE
Confidence 4567889999999999999887 8999999999999998832221111 1111000 01123344444
Q ss_pred cCCCCCCce-----------------eecC-C-----------ccccc------cCCCceeeccCccceEEEEEcCC---
Q 006909 238 GKKKSSHVP-----------------VVIP-D-----------EVFQI------EESPLQELHGHKGDVLDLAWSNS--- 279 (626)
Q Consensus 238 ~~~~~~~~~-----------------~~~~-~-----------~~~~~------~~~~~~~~~~h~~~V~~l~~s~~--- 279 (626)
+...+.... ...+ . ....+ ....+..+.||...|.+++|...
T Consensus 126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~ 205 (764)
T KOG1063|consen 126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGD 205 (764)
T ss_pred eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCC
Confidence 433221100 0000 0 00000 12456788999999999999842
Q ss_pred C-eEEEEeCCCcEEEeccCCCe---------------------ee---E--------eecCCCCeEEEEEeeCCCCEEEE
Q 006909 280 N-YLLSCSMDKTVRMWQVGCNQ---------------------CL---N--------VFDHHNYVTCVQFNPIDDNYFIS 326 (626)
Q Consensus 280 ~-~l~s~s~d~~v~iwd~~~~~---------------------~~---~--------~~~~~~~v~~~~~~p~~~~~l~s 326 (626)
. +|+|+|.|..||||.+.-+. +. . ..+|.++|.++.|+| .+..|++
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLS 284 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLS 284 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhhee
Confidence 2 79999999999999763221 11 1 015999999999999 8889999
Q ss_pred EeCCCcEEEEeCCCCe-----EEE---eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccC
Q 006909 327 GSIDGKVRIWGVCEKR-----VVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 398 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~~-----~~~---~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 398 (626)
++.|.++.+|...+.. .+. .-+.........|+|+++.+++-+..|..++|...... .+.......+|
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~----~w~~~~~iSGH 360 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT----FWTQEPVISGH 360 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc----ceeeccccccc
Confidence 9999999999765541 111 22334567889999999999999999999999833222 22233335567
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC----cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 399 GNKITGIQFSRDESQRIMITSEDSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
...|++++|.|.| .+|++.+.|.+-|++-.. +....-+...|.-.+++++|-+..-.+++|.+...+++|+....
T Consensus 361 ~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~ 439 (764)
T KOG1063|consen 361 VDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKS 439 (764)
T ss_pred cccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHH
Confidence 7999999999998 799999999999998633 11122222446778899999876667788888899999997431
Q ss_pred -----------------------CCCCCC-ccC---------------------Cccceeeec-----------------
Q 006909 475 -----------------------CFPSSK-QKN---------------------SVRSCEHFF----------------- 492 (626)
Q Consensus 475 -----------------------~~~~~~-~~~---------------------~~~~~~~~~----------------- 492 (626)
..|... ..+ ....+..+.
T Consensus 440 fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~ 519 (764)
T KOG1063|consen 440 FVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVH 519 (764)
T ss_pred HHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhH
Confidence 000000 000 000011111
Q ss_pred ----cCCcEEEEecCCCCcccccccCCCccc--cCccccccCCC--CcccCCCcccCCccccCCCCcccccCCCCCCCCC
Q 006909 493 ----SEGVSVAVQWPGIGTEQKSLCSSSLRD--CSQKWDNLETA--PWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPL 564 (626)
Q Consensus 493 ----~~g~~~av~~s~~~~~l~~~~~~~~~~--~~~~w~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~v 564 (626)
+.-.+.+++-+|+|..+++.+...... .+.+|....-. ..+..|.-.|+.++|||||++|++++. |+++.+
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-DRt~sl 598 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-DRTVSL 598 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-CceEEe
Confidence 122467888899999999887765432 36666664322 246778888999999999999999999 899999
Q ss_pred CCcccCCCCCCCChhhHHHHhhhccCCcccc-----ccccccceEEEEecCCceEeeeeecCcc
Q 006909 565 WDVTIDSDGYCQDPQQQRLQQQCLNNVDDVR-----AISATWGLVIVTAGCDGMIKTFHNYGLP 623 (626)
Q Consensus 565 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~dg~~ivt~g~Dg~Irvw~~~g~p 623 (626)
|...... .....+.....|.. .++| ++.++||||+|.+|++|...-+|
T Consensus 599 ~~~~~~~----------~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 599 YEVQEDI----------KDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eeeeccc----------chhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCch
Confidence 9886653 11122333555554 2334 88999999999999999987665
No 83
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.7e-24 Score=227.18 Aligned_cols=207 Identities=17% Similarity=0.241 Sum_probs=159.0
Q ss_pred CCceeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCe--------eeEee-cCCCCeEEEEEeeCCCC-EEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ--------CLNVF-DHHNYVTCVQFNPIDDN-YFIS 326 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~--------~~~~~-~~~~~v~~~~~~p~~~~-~l~s 326 (626)
.++..+.+|.+.|.+++|+|+ + +|++|+.|++|+|||+.++. ++..+ .|...|.+++|+| ++. +|++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaS 143 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCS 143 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEE
Confidence 456788899999999999996 3 89999999999999997542 22233 4889999999999 665 5679
Q ss_pred EeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe----
Q 006909 327 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI---- 402 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i---- 402 (626)
++.|++|++||+++++......+...|.+++|+|+|..|++++.|+.|++||++++.... .+..| .+.+
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~-tl~gH------~g~~~s~~ 216 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS-SFHIH------DGGKNTKN 216 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE-EEecc------cCCceeEE
Confidence 999999999999988766555567889999999999999999999999999999876543 22222 2332
Q ss_pred -EEEEEcCCCCcEEEEEeCCC----cEEEEeCCc---ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 403 -TGIQFSRDESQRIMITSEDS----KLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 403 -~~l~~s~~~~~~l~~~s~dg----~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
....|++++ .+|++++.|+ +|+|||+++ ++..+....+.+.+......++|.++++|+.|++|++|++..+
T Consensus 217 v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 217 IWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 223456776 5788877664 799999874 3334444333444444445667999999999999999999765
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-25 Score=225.30 Aligned_cols=240 Identities=22% Similarity=0.363 Sum_probs=202.3
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
+...|+++.|+++|.+||+|..+|.|.|||..+ ..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~---------------------------------------------~k 250 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE---------------------------------------------QK 250 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhh---------------------------------------------cc
Confidence 488999999999999999999999999999987 34
Q ss_pred Cceeecc-CccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEe-e-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 260 PLQELHG-HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 260 ~~~~~~~-h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~-~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
.+..+.+ |...|-+++|. ...+.+|+.|+.|..+|++..+.... + .|...|..+.|++ ++.++++|+.|+.+.||
T Consensus 251 ~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iw 328 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIW 328 (484)
T ss_pred ccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEec
Confidence 4566666 99999999998 45899999999999999987766554 4 4899999999999 99999999999999999
Q ss_pred eCCC-CeEEEeccCCCCeEEEEEee-CCCEEEEE--ecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 337 GVCE-KRVVDWADVRDVISAICYIP-DGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 337 d~~~-~~~~~~~~~~~~i~~i~~sp-~g~~l~~g--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
|... .....+..|...|.+++|+| ....||+| +.|+.|++||..++..... + ..+..|+++.|++...
T Consensus 329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~-v-------dtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS-V-------DTGSQVCSLIWSKKYK 400 (484)
T ss_pred cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc-c-------ccCCceeeEEEcCCCC
Confidence 9955 45667889999999999999 45677775 4689999999997765432 1 1237899999999974
Q ss_pred cEEEE-EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 413 QRIMI-TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 413 ~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.++.+ |..++.|.||+...........+|...|..++++|||..|++|+.|.++++|++-+.
T Consensus 401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 44443 345689999998766666666669999999999999999999999999999999774
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=5.5e-25 Score=209.56 Aligned_cols=237 Identities=19% Similarity=0.298 Sum_probs=202.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
-.|+++...|....++||+.|..+.++|..+ ++.+
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s---------------------------------------------~q~l 254 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPS---------------------------------------------NQIL 254 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecch---------------------------------------------hhhh
Confidence 5788999988878999999999999999886 5668
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 339 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~ 339 (626)
..+.||...|+.+.++|+. .+++++.|..|+||......+.... .|..+|+.+..+| ++.||++++.|++..+.|++
T Consensus 255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~ 333 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDIS 333 (506)
T ss_pred hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCcEEEEecCCceEEEEEcc
Confidence 8999999999999999987 8899999999999999766655544 4999999999999 99999999999999999999
Q ss_pred CCeEEEeccCC---CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 340 EKRVVDWADVR---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 340 ~~~~~~~~~~~---~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
++.......+. -.+++.+|+|||..|.+|+.||.++|||+....... ...+|.++|..++|+.+| .+|+
T Consensus 334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a-------~Fpght~~vk~i~FsENG-Y~La 405 (506)
T KOG0289|consen 334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA-------KFPGHTGPVKAISFSENG-YWLA 405 (506)
T ss_pred CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc-------cCCCCCCceeEEEeccCc-eEEE
Confidence 99887655553 448999999999999999999999999998876321 244567999999999998 8999
Q ss_pred EEeCCCcEEEEeCCcce--eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 417 ITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 417 ~~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
+++.|+.|++||+++.. .++... ....+.+++|.+.|.+|+.++.|=.|++++-.+
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred EEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 99999999999998543 344443 233799999999999999998887777777443
No 86
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.7e-25 Score=198.97 Aligned_cols=278 Identities=15% Similarity=0.167 Sum_probs=208.8
Q ss_pred EEEEEcC--CCeEEEE-------eCCCcEEEeccCCCeeeE---eecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909 272 LDLAWSN--SNYLLSC-------SMDKTVRMWQVGCNQCLN---VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 339 (626)
Q Consensus 272 ~~l~~s~--~~~l~s~-------s~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~ 339 (626)
.++.||| .++|+.+ ...|++.|.++...+-+. .+.-.+.+..++|++...+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5678887 4544433 235889999986444443 445778899999999888999999999999999965
Q ss_pred C--CeEEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 340 E--KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 340 ~--~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
. +.+..+..|...|.++.|++ +++.+++++-|++|++|+......... ..+|...|...+|+|.-+..++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T-------f~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT-------FNGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe-------ecCCccEEEEEecCCCCCCeEE
Confidence 3 45666889999999999998 566788899999999999876554322 3345689999999998889999
Q ss_pred EEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCC
Q 006909 417 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG 495 (626)
Q Consensus 417 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g 495 (626)
+++.|+++++||++..-.......|...+.++.|+. +.+.|+||+.|+.|++||+.+...|...
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e--------------- 229 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE--------------- 229 (311)
T ss_pred EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee---------------
Confidence 999999999999885544444555888999999986 5678899999999999999975322000
Q ss_pred cEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCC-cccccCCCCCCCCCCCcccCCCCC
Q 006909 496 VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGP-CRGSATWPAEKLPLWDVTIDSDGY 574 (626)
Q Consensus 496 ~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~s~~~~d~~i~vwd~~~~~~~~ 574 (626)
+.+|+-.|..+.|||... .|+++++ |-++++||.....
T Consensus 230 -------------------------------------L~gh~~AVRkvk~Sph~~~lLaSasY-DmT~riw~~~~~d--- 268 (311)
T KOG0277|consen 230 -------------------------------------LNGHGLAVRKVKFSPHHASLLASASY-DMTVRIWDPERQD--- 268 (311)
T ss_pred -------------------------------------ecCCceEEEEEecCcchhhHhhhccc-cceEEecccccch---
Confidence 122333345556666544 6888999 8999999988652
Q ss_pred CCChhhHHHHhhhccCCccc--cccccccceEEEEecCCceEeeeee
Q 006909 575 CQDPQQQRLQQQCLNNVDDV--RAISATWGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~ 619 (626)
-++.....|..-+ ..++.-++..+|+.|||+.+.||+-
T Consensus 269 -------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 -------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -------hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 2233344444433 3455547889999999999999985
No 87
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=222.68 Aligned_cols=246 Identities=19% Similarity=0.270 Sum_probs=205.8
Q ss_pred cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
....+.+.+.-..-+|.+.+|-+--+++++|++|..|+||+..+
T Consensus 43 etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt------------------------------------ 86 (794)
T KOG0276|consen 43 ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT------------------------------------ 86 (794)
T ss_pred ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc------------------------------------
Confidence 33456666777788999999999889999999999999999998
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC-eeeEee-cCCCCeEEEEEeeCCCCEEE
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~-~~~~~~-~~~~~v~~~~~~p~~~~~l~ 325 (626)
...++.+..|...|.+++.+|.. +++|+|.|-+|++||.+.+ .+.++| +|...|.+++|+|.|.+.|+
T Consensus 87 ---------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 87 ---------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA 157 (794)
T ss_pred ---------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence 45689999999999999999987 9999999999999999754 566777 49999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCeE-EEeccCCCCeEEEEEeeCC--CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909 326 SGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 402 (626)
+++.|++|++|.+.+... ..+.+|...|+|++|-+.| .+|++|+.|.++++||..+..+... ..+|...|
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T-------LeGHt~Nv 230 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT-------LEGHTNNV 230 (794)
T ss_pred eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH-------hhcccccc
Confidence 999999999999977554 4577999999999998855 5999999999999999998876432 33456899
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909 403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY 467 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~ 467 (626)
..+.|+|.= .++++|+.||+++||+..+....-...-....+.+++-.+.++.++.|.+.|.|.
T Consensus 231 s~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 231 SFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred eEEEecCCC-cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 999999986 6999999999999999664332222222456788888888888888887666554
No 88
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.7e-26 Score=200.10 Aligned_cols=249 Identities=21% Similarity=0.337 Sum_probs=201.8
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
.+|.+.|..+...--|+.|||++.|++|+|+.+.+...
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 57999999999888899999999999999999987321
Q ss_pred CCCceeeccCccceEEEEEcC--CC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCC-CCEEEEEeCC
Q 006909 258 ESPLQELHGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPID-DNYFISGSID 330 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~--~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~-~~~l~s~s~d 330 (626)
..++.+|.||.++|..++|.. -| .|++|+.||.|.||.-.+++-.+.. .|...|++++|.|.+ +-.|++++.|
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 245789999999999999974 34 9999999999999999888655544 388999999999943 4568899999
Q ss_pred CcEEEEeCCCC-e---EEEeccCCCCeEEEEEeeC---C-----------CEEEEEecCCcEEEEEcCCCceeeeEEeec
Q 006909 331 GKVRIWGVCEK-R---VVDWADVRDVISAICYIPD---G-----------KGFIVGSITGTCHFYKASGNDLKLEKVDFH 392 (626)
Q Consensus 331 g~v~iwd~~~~-~---~~~~~~~~~~i~~i~~sp~---g-----------~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 392 (626)
|.|.|.+.+.. . ......|.-.|++++|.|. | +.|++|+.|..|+||+..+.....+
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e----- 200 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE----- 200 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh-----
Confidence 99999988764 1 2235678889999999996 5 6799999999999999988754433
Q ss_pred cccccCCCCeEEEEEcCCC---CcEEEEEeCCCcEEEEeCCcceeee---eecCCCCCeEEEEEcCCCCEEEEEeCCccE
Q 006909 393 DRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDVIHKF---KGLPKSGSQMSASFTTTGKHIISIGDDCRV 466 (626)
Q Consensus 393 ~~~~~~~~~i~~l~~s~~~---~~~l~~~s~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I 466 (626)
.....|.+.|+.++|.|.- ...|++++.||++.||......... ........+..++||+.|+.|+.++.|+.|
T Consensus 201 ~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv 280 (299)
T KOG1332|consen 201 RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV 280 (299)
T ss_pred hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEE
Confidence 2244567999999999963 3579999999999999865221111 123356789999999999999999999999
Q ss_pred EEEECCC
Q 006909 467 YVWNYDE 473 (626)
Q Consensus 467 ~iwd~~~ 473 (626)
.+|.-+.
T Consensus 281 tlwke~~ 287 (299)
T KOG1332|consen 281 TLWKENV 287 (299)
T ss_pred EEEEeCC
Confidence 9998553
No 89
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.8e-25 Score=193.94 Aligned_cols=281 Identities=16% Similarity=0.175 Sum_probs=215.7
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
+..+.+.+|.++|..+.|+-+| +.++|+.|.+|++|+...+.+++++. |...|..++.+. ++..|++|+.|..|.+|
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVW 86 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEE
Confidence 4567788999999999999887 99999999999999999999999995 888999999998 99999999999999999
Q ss_pred eCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 337 GVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 337 d~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
|+.+|++.+ +.+|...|+.+.|+.+...+++|+.|.++++||-++......++.... ...|.++..+. ..|
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-----~D~V~Si~v~~---heI 158 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-----KDGVSSIDVAE---HEI 158 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-----cCceeEEEecc---cEE
Confidence 999998764 789999999999999999999999999999999988765443332222 37889998875 479
Q ss_pred EEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC--CCCccCCcccee-eec
Q 006909 416 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP--SSKQKNSVRSCE-HFF 492 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~~-~~~ 492 (626)
++|+.||+++.||++........ ...+|++++|+++++..+.++.|++|++-|-.++... ...+.......- .+.
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred EeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence 99999999999999876655544 4568999999999999999999999999999988432 233333222211 122
Q ss_pred cCCcEEEEecCCCCcccccccCCCccccCccccccCCCC---cccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909 493 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD 566 (626)
Q Consensus 493 ~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd 566 (626)
. .....++-+.||. +.+|+.+.+.. +.......++.+++.|.-..+.+|+. +.+..|-
T Consensus 237 q-sdthV~sgSEDG~-------------Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~--~~~~~~~ 297 (307)
T KOG0316|consen 237 Q-SDTHVFSGSEDGK-------------VYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG--HGDLFWY 297 (307)
T ss_pred c-cceeEEeccCCce-------------EEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC--Cceecee
Confidence 1 2222333344443 34455444332 22233334888999998776666663 4566674
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.1e-25 Score=214.39 Aligned_cols=255 Identities=20% Similarity=0.331 Sum_probs=206.0
Q ss_pred cccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 179 AHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
-|.+.|+.+.+-|... .+||++..+.|.|||........... -+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-----------------------------------~~ 166 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-----------------------------------GE 166 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-----------------------------------cc
Confidence 5999999999999765 77888889999999998632111000 01
Q ss_pred CCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCee-------eEee-cCCCCeEEEEEeeCCCCEEEEE
Q 006909 258 ESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~-------~~~~-~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
..|-..+.||...-.+++|++. +.|++++.|++|++||+..... ...+ .|...|..++|+|.+.+.|+++
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv 246 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV 246 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence 3456688899998899999975 5999999999999999965433 2223 4999999999999899999999
Q ss_pred eCCCcEEEEeCCC--CeE-EEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 328 SIDGKVRIWGVCE--KRV-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 328 s~dg~v~iwd~~~--~~~-~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
+.|+.+.|||+++ .+. .....|...|+|++|+| ++..||+|+.|++|.+||+++.......+. .|...|.
T Consensus 247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e------~H~dev~ 320 (422)
T KOG0264|consen 247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE------GHEDEVF 320 (422)
T ss_pred cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc------CCCcceE
Confidence 9999999999995 222 23567899999999999 567788999999999999998876544333 3458999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCcc--------------eeeeeecCCCCCeEEEEEcCCCCE-EEEEeCCccEEE
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVDV--------------IHKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYV 468 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--------------~~~~~~~~~~~~v~~~~~sp~g~~-l~s~s~dg~I~i 468 (626)
++.|+|.....|++++.|+.+.|||+... ...|.-.+|...|..++|+|+..+ |+++++|+.+.|
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence 99999998889999999999999997532 223555678999999999999876 567889999999
Q ss_pred EECCCC
Q 006909 469 WNYDEL 474 (626)
Q Consensus 469 wd~~~~ 474 (626)
|.....
T Consensus 401 W~~s~~ 406 (422)
T KOG0264|consen 401 WQMAEN 406 (422)
T ss_pred eecccc
Confidence 998864
No 91
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=5.5e-25 Score=230.18 Aligned_cols=249 Identities=21% Similarity=0.372 Sum_probs=205.8
Q ss_pred cccccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCC
Q 006909 165 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 244 (626)
Q Consensus 165 ~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (626)
|.......+...+.||.+.|++++|..-+.+|++|+.|.+++|||..+
T Consensus 233 ~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-------------------------------- 280 (537)
T KOG0274|consen 233 WDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-------------------------------- 280 (537)
T ss_pred eecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--------------------------------
Confidence 334445555556999999999999987788999999999999999887
Q ss_pred ceeecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCE
Q 006909 245 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~ 323 (626)
+.+.+.+.+|.+.|.++...+ ..+++|+.|.+|++|++.++.++.++. |..+|.++.. ++.+
T Consensus 281 -------------g~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~---~~~~ 343 (537)
T KOG0274|consen 281 -------------GECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL---DEPL 343 (537)
T ss_pred -------------CcEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe---cCCE
Confidence 566889999999999998654 478889999999999999999999998 9999999999 5799
Q ss_pred EEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC-ceeeeEEeeccccccCCCC
Q 006909 324 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~ 401 (626)
+++|+.|++|++||+.+++++. +.+|...|.++.+.+. ..+++|+.|++|++||+.+. ++... ...|..-
T Consensus 344 lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t-------l~~h~~~ 415 (537)
T KOG0274|consen 344 LVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT-------LQGHTSL 415 (537)
T ss_pred EEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh-------hcCCccc
Confidence 9999999999999999988775 7789999999987765 89999999999999999988 43221 2333456
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecC-CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
+..+.+.. ++|++++.|++|++||..+......... +...|..+++. ...+++++.|+++++||++++.
T Consensus 416 v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 416 VSSLLLRD---NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred cccccccc---ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 66665543 5899999999999999775444333333 56778887765 4678899999999999999873
No 92
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2e-24 Score=226.05 Aligned_cols=233 Identities=19% Similarity=0.353 Sum_probs=199.1
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
|...|.+..|. ..++++++.|++|++|+..++ .
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~---------------------------------------------~ 239 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG---------------------------------------------Y 239 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccc---------------------------------------------e
Confidence 67788999998 558999999999999999873 2
Q ss_pred Ccee-eccCccceEEEEEcC-CCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 260 PLQE-LHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 260 ~~~~-~~~h~~~V~~l~~s~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
.+.. +.||.+.|.++++.. +++|++|+.|.++++||..+|+|...+. |.+.|.++.. .+..+++|+.|.+|++|
T Consensus 240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~---~~~~~~sgs~D~tVkVW 316 (537)
T KOG0274|consen 240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI---DPFLLVSGSRDNTVKVW 316 (537)
T ss_pred EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc---cCceEeeccCCceEEEE
Confidence 2344 889999999999976 4599999999999999999999999996 9999999988 45789999999999999
Q ss_pred eCCCCeEEEecc-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 337 GVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 337 d~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
++.++..+.... |.++|.++.++ +.++++|+.||+|++||+...++... ..+|...|+++.+.+. .++
T Consensus 317 ~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s-------l~gH~~~V~sl~~~~~--~~~ 385 (537)
T KOG0274|consen 317 DVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS-------LSGHTGRVYSLIVDSE--NRL 385 (537)
T ss_pred eccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee-------ecCCcceEEEEEecCc--ceE
Confidence 999999888776 99999999987 88999999999999999997665332 3346689999988874 489
Q ss_pred EEEeCCCcEEEEeCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 416 MITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
++|+.|++|++||+.+. ........|...+..+. ..+++|++++.|++|++||..++.
T Consensus 386 ~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 386 LSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred EeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecccCc
Confidence 99999999999998876 44444455777776554 458899999999999999999873
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=207.45 Aligned_cols=250 Identities=18% Similarity=0.290 Sum_probs=211.6
Q ss_pred cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
+...+..+|+||+..|+.+.|+|+...+++++.|..|+||.+..
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~------------------------------------ 292 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL------------------------------------ 292 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc------------------------------------
Confidence 44567788999999999999999999999999999999999876
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCC---CCeEEEEEeeCCCCEE
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDNYF 324 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~~p~~~~~l 324 (626)
.........|.++|+.+..+|.| ||++++.|++..+.|++++.++....+. -.+++++|+| ||.+|
T Consensus 293 ---------~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLif 362 (506)
T KOG0289|consen 293 ---------SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIF 362 (506)
T ss_pred ---------ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEE
Confidence 22345566799999999999998 9999999999999999999998888654 3589999999 99999
Q ss_pred EEEeCCCcEEEEeCCCCeE-EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 325 ISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
.+|..||.|+|||+..+.. ..+.+|.++|.+++|+.+|-+|++++.|+.|++||++.... +..+..... ..+.
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-~kt~~l~~~-----~~v~ 436 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-FKTIQLDEK-----KEVN 436 (506)
T ss_pred eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-cceeecccc-----ccce
Confidence 9999999999999987664 45788999999999999999999999999999999987653 334444432 4799
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
++.|.+.| .+|++++.|=+|++++-. +.........|.+..+++.|....++++++|.|..++++.+
T Consensus 437 s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 437 SLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999998 788888887777777732 33333344457778899999999999999999999998865
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.1e-24 Score=230.19 Aligned_cols=292 Identities=20% Similarity=0.269 Sum_probs=217.9
Q ss_pred ccCcEEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc-
Q 006909 180 HKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI- 256 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 256 (626)
|+..|.+++.+|||..+|||| .||.++||+........ ..++.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~----------------------------------~~~~~~ 57 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK----------------------------------EEKNEN 57 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchh----------------------------------hhhhcc
Confidence 466799999999999999999 89999999987521100 00000
Q ss_pred cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC------------------CeeeEee-cCCCCeEEEEE
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------------NQCLNVF-DHHNYVTCVQF 316 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~------------------~~~~~~~-~~~~~v~~~~~ 316 (626)
-...+.....|.+.|+|+.|+||| +||+||.|+.|.||.... .++...+ +|...|..++|
T Consensus 58 l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W 137 (942)
T KOG0973|consen 58 LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW 137 (942)
T ss_pred cchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence 135567778899999999999999 999999999999998762 1233334 59999999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc
Q 006909 317 NPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 395 (626)
Q Consensus 317 ~p~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 395 (626)
+| ++.+|++++.|++|.+|+.++.+.. .+.+|...|..+.|.|-|++|++-+.|++|++|.+.+...... +..+-..
T Consensus 138 sp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~-It~pf~~ 215 (942)
T KOG0973|consen 138 SP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS-ITKPFEE 215 (942)
T ss_pred CC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe-eccchhh
Confidence 99 9999999999999999999987654 4789999999999999999999999999999999776443222 2111112
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC-----CC-----------
Q 006909 396 KTSGNKITGIQFSRDESQRIMITSE----DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----GK----------- 455 (626)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~~l~~~s~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-----g~----------- 455 (626)
.........+.||||| .+|++... -.++.|.+-.+........+|.+++..+.|+|. .+
T Consensus 216 ~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y 294 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY 294 (942)
T ss_pred CCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence 2234568899999998 68887633 347888876555445555668999999999871 11
Q ss_pred -EEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCc
Q 006909 456 -HIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL 517 (626)
Q Consensus 456 -~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~ 517 (626)
.+|+|+.|++|-||...........+ .++ +..++.++|+|||..|+.++.|+.
T Consensus 295 ~i~AvgSqDrSlSVW~T~~~RPl~vi~--------~lf-~~SI~DmsWspdG~~LfacS~DGt 348 (942)
T KOG0973|consen 295 CIAAVGSQDRSLSVWNTALPRPLFVIH--------NLF-NKSIVDMSWSPDGFSLFACSLDGT 348 (942)
T ss_pred EEEEEecCCccEEEEecCCCCchhhhh--------hhh-cCceeeeeEcCCCCeEEEEecCCe
Confidence 57899999999999985532111111 111 244677888888887777666553
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.4e-25 Score=212.11 Aligned_cols=271 Identities=14% Similarity=0.184 Sum_probs=209.2
Q ss_pred cCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 181 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 181 ~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
...|.+++|||... -+|+.+. -.+.||+..+ ..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~---------------------------------------------~~ 59 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT---------------------------------------------RS 59 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecch---------------------------------------------hh
Confidence 35799999999654 3444443 4599998876 34
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
..+++......|.++.|-.|| +|++|...|.|+|+|+.+...++.+ .|..+|..+.|+|.++..|++|+.|+.+++||
T Consensus 60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 456666778899999999999 7778888899999997776666666 49999999999998888899999999999999
Q ss_pred CCCCeEE-EeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 338 VCEKRVV-DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 338 ~~~~~~~-~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
+.+..+. .+.+|.+.|.|.+|+|. +..+++|+.||.|++||++........+ .|+.+|..+.+-|.| ..+
T Consensus 140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-------nhg~pVe~vl~lpsg-s~i 211 (487)
T KOG0310|consen 140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-------NHGCPVESVLALPSG-SLI 211 (487)
T ss_pred cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-------cCCCceeeEEEcCCC-CEE
Confidence 9988764 57899999999999995 5588999999999999999875322222 245899999999997 455
Q ss_pred EEEeCCCcEEEEeCCcceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccC
Q 006909 416 MITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE 494 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 494 (626)
++++ .+.|+|||+....+.... ..|...|+|+.+..++..|++|+-|+.|++||+.+-...........+-.++.+|+
T Consensus 212 asAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d 290 (487)
T KOG0310|consen 212 ASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD 290 (487)
T ss_pred EEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCC
Confidence 5554 578999998754444333 34899999999999999999999999999999877543333333333344466666
Q ss_pred CcEEEEecCCCC
Q 006909 495 GVSVAVQWPGIG 506 (626)
Q Consensus 495 g~~~av~~s~~~ 506 (626)
+..++++.+.+.
T Consensus 291 d~t~viGmsnGl 302 (487)
T KOG0310|consen 291 DQTVVIGMSNGL 302 (487)
T ss_pred CceEEEecccce
Confidence 666666555443
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=8.5e-25 Score=231.09 Aligned_cols=264 Identities=23% Similarity=0.385 Sum_probs=201.6
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
+...|.+.|+|+.|+|||+|||+|++|+.|.||....... ...|...+ .. .. .
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~-~~~fgs~g------~~------------~~--------v 116 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS-GTVFGSTG------GA------------KN--------V 116 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC-cccccccc------cc------------cc--------c
Confidence 3457999999999999999999999999999999874110 00000000 00 00 0
Q ss_pred ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV 333 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v 333 (626)
-..+.+..+.+|.+.|.+++|+|++ +|++++.|++|.|||..+...+..+. |...|..+.|.| -|++|++-+.|++|
T Consensus 117 E~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrti 195 (942)
T KOG0973|consen 117 ESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTL 195 (942)
T ss_pred ceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceE
Confidence 0134577889999999999999988 99999999999999999998888885 999999999999 99999999999999
Q ss_pred EEEeCCCCeEEEec-------cCCCCeEEEEEeeCCCEEEEEec----CCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909 334 RIWGVCEKRVVDWA-------DVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402 (626)
Q Consensus 334 ~iwd~~~~~~~~~~-------~~~~~i~~i~~sp~g~~l~~g~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 402 (626)
++|.+.+-.+.+.. .....+..+.|+|||++|++... ..++.|.+-.+.+.... ..+|..++
T Consensus 196 kvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~-------LvGH~~p~ 268 (942)
T KOG0973|consen 196 KVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKD-------LVGHSAPV 268 (942)
T ss_pred EEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeee-------eecCCCce
Confidence 99997663333321 22345788999999999998643 23566666544332221 33456899
Q ss_pred EEEEEcCC--------CC--------cEEEEEeCCCcEEEEeCCcceeeeeec-CCCCCeEEEEEcCCCCEEEEEeCCcc
Q 006909 403 TGIQFSRD--------ES--------QRIMITSEDSKLRILDGVDVIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCR 465 (626)
Q Consensus 403 ~~l~~s~~--------~~--------~~l~~~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg~ 465 (626)
+++.|+|. |. ..+|+|+.|++|.||........+..+ -....|..++|+|||..|+.+|.||+
T Consensus 269 evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt 348 (942)
T KOG0973|consen 269 EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT 348 (942)
T ss_pred EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence 99999872 11 168899999999999976554444432 14568999999999999999999999
Q ss_pred EEEEECCCC
Q 006909 466 VYVWNYDEL 474 (626)
Q Consensus 466 I~iwd~~~~ 474 (626)
|.+..++..
T Consensus 349 V~~i~Fee~ 357 (942)
T KOG0973|consen 349 VALIHFEEK 357 (942)
T ss_pred EEEEEcchH
Confidence 999999764
No 97
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=183.56 Aligned_cols=251 Identities=20% Similarity=0.339 Sum_probs=200.5
Q ss_pred ccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
.+.+.-+.|++.|.|.+|||+|++||||+.|.+|++..+....+.
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~----------------------------------- 124 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCN----------------------------------- 124 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccc-----------------------------------
Confidence 334445679999999999999999999999999999876542111
Q ss_pred ccccccCCCceeeccCccceEEEEEcCC----C-eEEEE-eCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEE
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNS----N-YLLSC-SMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF 324 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~----~-~l~s~-s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l 324 (626)
...+-.++.-|.+.|..++|..+ + .|+++ ..|..|.+-|...|+....+ +|.+.|.++- +- ++-.|
T Consensus 125 -----~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw-n~~m~ 197 (350)
T KOG0641|consen 125 -----ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW-NGAMF 197 (350)
T ss_pred -----ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee-cCcEE
Confidence 02334567789999999999742 3 55554 45777888899999988887 4888888763 22 78999
Q ss_pred EEEeCCCcEEEEeCCCCeEEEeccC--------CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc
Q 006909 325 ISGSIDGKVRIWGVCEKRVVDWADV--------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 396 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~~~~~~~~~~~--------~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 396 (626)
++|+.|.+|++||++-..++...+. ...|.+++..|.|++|++|..|..+.+||+++++.... ..
T Consensus 198 ~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~-------f~ 270 (350)
T KOG0641|consen 198 ASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR-------FH 270 (350)
T ss_pred EccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee-------eC
Confidence 9999999999999998776654322 25699999999999999999999999999999886543 22
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC----cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
.|...|.++.|+|.. .++++++.|..|++-|+. ..........|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus 271 phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 271 PHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 345889999999986 899999999999999975 222333334588889999999999899999999999999875
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.6e-24 Score=208.28 Aligned_cols=245 Identities=24% Similarity=0.386 Sum_probs=202.0
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
++|...|.+++.||||+|||||+.|..|.||+..+
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t--------------------------------------------- 233 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT--------------------------------------------- 233 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcc---------------------------------------------
Confidence 48999999999999999999999999999999998
Q ss_pred CCCceeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 258 ESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
.++++.+.+|.+.|.+++|-.. ..|++++.|.+|++|+++....+.++ +|.+.|.+|.... -++.+-+|+.|+++++
T Consensus 234 ~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rl 312 (479)
T KOG0299|consen 234 LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRL 312 (479)
T ss_pred cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEE
Confidence 4567889999999999999865 48999999999999999887777655 7999999998876 6777777779999999
Q ss_pred EeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccccc-----CCCCeEEEEEcCC
Q 006909 336 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT-----SGNKITGIQFSRD 410 (626)
Q Consensus 336 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~i~~l~~s~~ 410 (626)
|++.......+.++.+.+.|++|-.+ ..+++|+.+|.|.+|++...+.....-..|+.... +...|++++..|.
T Consensus 313 wKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~ 391 (479)
T KOG0299|consen 313 WKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG 391 (479)
T ss_pred EeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc
Confidence 99987777778889999999999654 58999999999999999887766554444433222 1238999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCcc---eeeeeecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEE
Q 006909 411 ESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWN 470 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd 470 (626)
. .++++|+.+|.|++|-+.+. +..+...+-.+.|++++|+++|+.|++| +....+--|-
T Consensus 392 s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 392 S-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred C-ceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence 5 89999999999999997755 4444445567899999999999976665 4444444443
No 99
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=2.7e-23 Score=201.45 Aligned_cols=413 Identities=14% Similarity=0.224 Sum_probs=273.8
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCC--------cEEEEEcCCCcc-----------eeeeecCCCCCccCCCCCe
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDG--------VVRIWHVTSVAA-----------SCKSFTDDGGFGSNAKEGK 234 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg--------~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 234 (626)
++-+.||+..|.||+.+||--.+|+|-.-| .++|||..+... .+..|+.. ..+.
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~-------~~G~ 169 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKI-------NGGS 169 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeeccc-------CCCc
Confidence 344669999999999999988888876555 499999554322 22222211 1111
Q ss_pred eeecCCCCCCceeecCCcccccc-CCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-----
Q 006909 235 IKFGKKKSSHVPVVIPDEVFQIE-ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD----- 306 (626)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~----- 306 (626)
.......++.... .+|+.. +............|....|+|.+ .+++++ .+.+..|+.+++...+...
T Consensus 170 ~l~~vD~s~~h~l----SVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ 244 (626)
T KOG2106|consen 170 LLCAVDDSNPHML----SVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKR 244 (626)
T ss_pred eEEEecCCCcccc----chhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccc
Confidence 1111111111111 122222 12233344456788899999965 555555 5789999999887766542
Q ss_pred CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee
Q 006909 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 385 (626)
Q Consensus 307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~ 385 (626)
....|.|++|.+ ++ -+++|..+|.|.||+..+.+... ...|.+.|.+++...+|..|- |+.|..|..||-.-.+.
T Consensus 245 ekk~Vl~v~F~e-ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~- 320 (626)
T KOG2106|consen 245 EKKFVLCVTFLE-NG-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKL- 320 (626)
T ss_pred cceEEEEEEEcC-CC-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccccccc-
Confidence 346899999998 55 47899999999999998776543 448999999999999997555 99999999999321110
Q ss_pred eeEEeec---------------------------c--------ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 006909 386 LEKVDFH---------------------------D--------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 430 (626)
Q Consensus 386 ~~~~~~~---------------------------~--------~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~ 430 (626)
..+.++ + ....|......++.+|+. ..+++++.|+.+++|+-.
T Consensus 321 -r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~~~ 398 (626)
T KOG2106|consen 321 -RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWNDH 398 (626)
T ss_pred -ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEccCC
Confidence 000000 0 012355667788889985 789999999999999943
Q ss_pred cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccc
Q 006909 431 DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQK 510 (626)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~ 510 (626)
+..-... -..+..++.|+|.| .||.|+..|...+.|.++.............+++.|+|+|.++|++-.++..+++
T Consensus 399 k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 399 KLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred ceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 3333222 35678899999999 9999999999999999987444333337788999999999999999888888888
Q ss_pred cccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCC-hh--hHHHHhhh
Q 006909 511 SLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQD-PQ--QQRLQQQC 587 (626)
Q Consensus 511 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~-~~--~~~~~~~~ 587 (626)
.++.+...... .-.-++.+++.+.||+|++++.+.+. |-.|..|......+..... .. ...+...+
T Consensus 475 ~Vs~~g~~y~r----------~~k~~gs~ithLDwS~Ds~~~~~~S~-d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF 543 (626)
T KOG2106|consen 475 RVSANGRKYSR----------VGKCSGSPITHLDWSSDSQFLVSNSG-DYEILYWKPSECKQITSVKDVKWATYTCTLGF 543 (626)
T ss_pred EECCCCcEEEE----------eeeecCceeEEeeecCCCceEEeccC-ceEEEEEccccCcccceecceeeeeeEEEEEE
Confidence 77665432211 11223378999999999999999887 6778889433321111000 00 00000001
Q ss_pred c----cCCccccccccc-cceEEEEecCCceEeeeee
Q 006909 588 L----NNVDDVRAISAT-WGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 588 ~----~~~~~~~~~s~~-dg~~ivt~g~Dg~Irvw~~ 619 (626)
. .+...+.+++.+ .++++|+|.+-|.|++|++
T Consensus 544 ~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 544 EVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred EEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 1 111111222222 6889999999999999985
No 100
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.6e-25 Score=203.93 Aligned_cols=280 Identities=18% Similarity=0.259 Sum_probs=226.5
Q ss_pred cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---------cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 266 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---------DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---------~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
|..+.+-|..|+||| +|++|+.||.|.+||..+|+..+.+ -+..+|.|+.|+. +...+++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence 567788999999998 9999999999999999998776543 2778999999999 9999999999999999
Q ss_pred EeCCCCeEEEec--cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909 336 WGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 336 wd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
|.+.+|.++... .|...|+|+.|+.|+..+++++.|.++++.-+.+++...+ .++|...|+...|.++| .
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE-------frGHsSyvn~a~ft~dG-~ 361 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE-------FRGHSSYVNEATFTDDG-H 361 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHH-------hcCccccccceEEcCCC-C
Confidence 999999987643 6889999999999999999999999999999988876432 55667899999999998 7
Q ss_pred EEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCC-CCEEEEEeCCccEEEEECCCCCCCCCCccCCccceee
Q 006909 414 RIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 490 (626)
Q Consensus 414 ~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 490 (626)
++++++.||+|++|+.. ++..+|+..+...+|+++-.-|. -.+++.+...++|+|-++...........+.
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkR------ 435 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKR------ 435 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCc------
Confidence 99999999999999976 56777877777788888887774 4678888889999999998752221111110
Q ss_pred eccCCcEEEEecCCCCcccccccCCCccccCccccccCC--CCcccCCCcccCCccccCCCCcccccCCCCCCCCCCC
Q 006909 491 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET--APWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWD 566 (626)
Q Consensus 491 ~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd 566 (626)
-.|..++...+|.|..++..+.+..-+++. ++.+ ...+.-++..+.+++-.|.-+.+++.+. |+.+++|.
T Consensus 436 --EgGdFi~~~lSpkGewiYcigED~vlYCF~---~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE-DgllKLWk 507 (508)
T KOG0275|consen 436 --EGGDFINAILSPKGEWIYCIGEDGVLYCFS---VLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE-DGLLKLWK 507 (508)
T ss_pred --cCCceEEEEecCCCcEEEEEccCcEEEEEE---eecCceeeeeecccccccccccCcccchhhhhcc-cchhhhcC
Confidence 135666777777777777777766555443 1121 1245567778999999999999999988 89999994
No 101
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.1e-25 Score=207.82 Aligned_cols=280 Identities=15% Similarity=0.236 Sum_probs=214.5
Q ss_pred CceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 260 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
.+..+.||...|.+++=+|.. .+++|+.||.|+|||+.+..++.++. |.+.|..+++.. ..+++++.|.+|+.|
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQW 134 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeee
Confidence 356778999999999999976 79999999999999999999999996 888999999964 778899999999999
Q ss_pred eCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 337 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 337 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
-+... ..........+..+.-+..+..+++++. .|.|||..-.... ..+... ...|.++.|+|-....|+
T Consensus 135 k~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv-~smswG------~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 135 KIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPV-SSMSWG------ADSISSVKFNPVETSILA 204 (433)
T ss_pred eccCC-cceeeeccccccccccccccccccccCc--eeeecccccCCcc-ceeecC------CCceeEEecCCCcchhee
Confidence 88764 4455556667777777777778888765 5899998755432 223222 267999999999878888
Q ss_pred EEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccC
Q 006909 417 ITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE 494 (626)
Q Consensus 417 ~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 494 (626)
++..|+.|.+||++.. ..... ....-+.++|+|.+-.+++|++|..++.||+.....+...
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi---~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v-------------- 267 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVI---LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV-------------- 267 (433)
T ss_pred eeccCCceEEEecccCCccceee---eeccccceecCccccceeeccccccceehhhhhhcccchh--------------
Confidence 9999999999998743 33322 2345578999998888889999999999999875322222
Q ss_pred CcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCC
Q 006909 495 GVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGY 574 (626)
Q Consensus 495 g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~ 574 (626)
..+|...|..+.|||-|+-++++++ |..|+|+....+
T Consensus 268 --------------------------------------~~dhvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~~---- 304 (433)
T KOG0268|consen 268 --------------------------------------HKDHVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNHG---- 304 (433)
T ss_pred --------------------------------------hcccceeEEEeccCCCcchhccccc-cceEEEeecCCC----
Confidence 2234444667778888888999999 899999988877
Q ss_pred CCChhhHHHHhhhcc-CCccc--cccccccceEEEEecCCceEeeeeec
Q 006909 575 CQDPQQQRLQQQCLN-NVDDV--RAISATWGLVIVTAGCDGMIKTFHNY 620 (626)
Q Consensus 575 ~~~~~~~~~~~~~~~-~~~~~--~~~s~~dg~~ivt~g~Dg~Irvw~~~ 620 (626)
.....++. --.|+ +.+|. |.++|++||+||.||+|+-+
T Consensus 305 -------~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 305 -------HSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred -------cchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecc
Confidence 22222221 11222 34444 89999999999999999865
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.8e-24 Score=210.12 Aligned_cols=296 Identities=16% Similarity=0.162 Sum_probs=206.8
Q ss_pred CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee----eEeec--CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC----LNVFD--HHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~----~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
......+.+|+..|+++++.|.| +|++|+.|.+|++||+..... .+.+. ....|++++|++ +++.|++.+..
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGS 235 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecC
Confidence 44556788999999999999998 999999999999999975322 22222 456799999999 88888888888
Q ss_pred CcEEEEeCCCCeEEE-------------eccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccc
Q 006909 331 GKVRIWGVCEKRVVD-------------WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 396 (626)
Q Consensus 331 g~v~iwd~~~~~~~~-------------~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 396 (626)
...+|+|-.+.+... ..+|...++|.+|+|.. ..+++++.||++++||+.+.+.....+.... ..
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~-~~ 314 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP-AG 314 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc-CC
Confidence 899999987765443 45677889999999965 5788999999999999988776555443322 22
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc----ceeee-eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~~~-~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
...-+++.++|+|+| .+||+|+.||.|.+|+... ....+ ..|.....|+++.||+||++|++-+.|+++++||+
T Consensus 315 g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 334678999999998 6899999999999999542 22222 22333448999999999999999999999999999
Q ss_pred CCCCCCCCCccC----CccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccc--cCCCCcccCCCcccCCccc
Q 006909 472 DELCFPSSKQKN----SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN--LETAPWIRDSERFSLGSWF 545 (626)
Q Consensus 472 ~~~~~~~~~~~~----~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~ 545 (626)
.....+.....+ ....-+.|+|+..++...-+-... .......+.+. ++....+.-....|..+.|
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~--------~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~W 465 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG--------MTAGTLFFFDRMTLDTVYKIDISTASVVRCLW 465 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCC--------CCCceEEEEeccceeeEEEecCCCceEEEEee
Confidence 987544433222 112233567766665544331110 00011111111 1111112222445677788
Q ss_pred cCCCCcccccCCCCCCCCCC
Q 006909 546 SNDGPCRGSATWPAEKLPLW 565 (626)
Q Consensus 546 s~dg~~l~s~~~~d~~i~vw 565 (626)
+|.-+.|..++. ||.++++
T Consensus 466 hpkLNQi~~gsg-dG~~~vy 484 (641)
T KOG0772|consen 466 HPKLNQIFAGSG-DGTAHVY 484 (641)
T ss_pred cchhhheeeecC-CCceEEE
Confidence 888776666665 6777775
No 103
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.6e-24 Score=194.02 Aligned_cols=294 Identities=19% Similarity=0.248 Sum_probs=217.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 263 (626)
Q Consensus 184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (626)
-.|+.|++.|.+||.|+.||.|.|||+.+ ...-+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T---------------------------------------------~~iar~ 60 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT---------------------------------------------FRIARM 60 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc---------------------------------------------cchhhh
Confidence 78999999999999999999999999987 334567
Q ss_pred eccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe
Q 006909 264 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 342 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~ 342 (626)
+.+|..+|.+++||++| .|+|+|.|..|.+||+..|.+++.+....+|+.+.|+|.+.+.+++.-.+..-.+.++....
T Consensus 61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~ 140 (405)
T KOG1273|consen 61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK 140 (405)
T ss_pred hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence 88999999999999998 89999999999999999999999999999999999999777777766655555555554322
Q ss_pred --EEEecc---CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909 343 --VVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 417 (626)
Q Consensus 343 --~~~~~~---~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~ 417 (626)
++.... ......+..|.+.|+++++|...|.+.+||..+.++... ..... ...|..+.++..| .+|++
T Consensus 141 h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas-~rits-----~~~IK~I~~s~~g-~~lii 213 (405)
T KOG1273|consen 141 HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS-FRITS-----VQAIKQIIVSRKG-RFLII 213 (405)
T ss_pred eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee-eeech-----heeeeEEEEeccC-cEEEE
Confidence 221111 112233446899999999999999999999998766443 11111 2578899999997 79999
Q ss_pred EeCCCcEEEEeCCcceee-----------eeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCCCCCCCCCccCCc
Q 006909 418 TSEDSKLRILDGVDVIHK-----------FKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSV 485 (626)
Q Consensus 418 ~s~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~ 485 (626)
.+.|..|+.|++.+.... +...-+...-.+++|+.+|.|++.++. ...+|||.-..|......+..
T Consensus 214 NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~-- 291 (405)
T KOG1273|consen 214 NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT-- 291 (405)
T ss_pred ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC--
Confidence 999999999997633222 222223344567899999999998874 468999998877333222211
Q ss_pred cceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcc
Q 006909 486 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCR 552 (626)
Q Consensus 486 ~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l 552 (626)
.....+.+.|.|-...+++..++ .+.+|.+..... -.+|+||-+.+
T Consensus 292 -------kgE~l~DV~whp~rp~i~si~sg----~v~iw~~~~~en----------wsafAPdFqel 337 (405)
T KOG1273|consen 292 -------KGEELLDVNWHPVRPIIASIASG----VVYIWAVVQVEN----------WSAFAPDFQEL 337 (405)
T ss_pred -------chhheeecccccceeeeeeccCC----ceEEEEeecccc----------hhhcCchHHHH
Confidence 11345678888888888777553 356666644222 23577776644
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-22 Score=176.51 Aligned_cols=296 Identities=17% Similarity=0.177 Sum_probs=210.5
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.-+..|.+++|+|.|.+.|.|+...+++|-.....-... ........+. .
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r------~~hea~~~pp------------------------~ 79 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLR------HAHEAAKQPP------------------------S 79 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcc------cccccccCCC------------------------e
Confidence 456789999999999999999999999987543310000 0000000000 0
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE-----ee-cCCCCeEEEEEee---CCCCEEEEEe
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-----VF-DHHNYVTCVQFNP---IDDNYFISGS 328 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~-----~~-~~~~~v~~~~~~p---~~~~~l~s~s 328 (626)
...+.-+.|.+.|.|.+|+|+| ++++|+.|++|++.-++...+.. .| -|.+.|..++|.. ..+.+|++++
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 0122334689999999999998 88999999999998765443322 22 3889999999964 1345677765
Q ss_pred C-CCcEEEEeCCCCeE-EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEE
Q 006909 329 I-DGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 329 ~-dg~v~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l 405 (626)
. |..|++-|...++. ..+.+|.+.|.++ ++-+|-.+++|+.|.+|++||++-+..... -..+++. ......|..+
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~-glessavaav 237 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG-GLESSAVAAV 237 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC-CcccceeEEE
Confidence 4 56777778877664 4577888888876 556788999999999999999987655332 1111110 1123679999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCc
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 485 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 485 (626)
+..|.| ++|++|-.|....+||++........++|...|.++.|+|...|+++++.|..|++-|++..... ...
T Consensus 238 ~vdpsg-rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~-----el~ 311 (350)
T KOG0641|consen 238 AVDPSG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH-----ELP 311 (350)
T ss_pred EECCCc-ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh-----cCc
Confidence 999998 89999999999999999977777777889999999999999999999999999999999875211 111
Q ss_pred cceeeeccCCcEEEEecCCCCccccccc
Q 006909 486 RSCEHFFSEGVSVAVQWPGIGTEQKSLC 513 (626)
Q Consensus 486 ~~~~~~~~~g~~~av~~s~~~~~l~~~~ 513 (626)
...++-+ ....+.+.|.|....+.+.+
T Consensus 312 ~~vv~eh-kdk~i~~rwh~~d~sfisss 338 (350)
T KOG0641|consen 312 IMVVAEH-KDKAIQCRWHPQDFSFISSS 338 (350)
T ss_pred eEEEEec-cCceEEEEecCccceeeecc
Confidence 1122223 34456778888776555433
No 105
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=3.3e-22 Score=194.03 Aligned_cols=368 Identities=16% Similarity=0.259 Sum_probs=256.8
Q ss_pred cccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcc---------------eeeeecCCCCCccCCCCCeeeecCCCC
Q 006909 179 AHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAA---------------SCKSFTDDGGFGSNAKEGKIKFGKKKS 242 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (626)
.-...|....|+|.+. ++++.+ .|.+..|+...+.. .+..|..++..+...+.+.+.++....
T Consensus 198 ~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 198 TSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGT 276 (626)
T ss_pred eccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCC
Confidence 4556788899999665 555554 57899998876432 567788888888888888887776643
Q ss_pred CCceeecCCccccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCC-----------------------
Q 006909 243 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN----------------------- 299 (626)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~----------------------- 299 (626)
... .+....|.+.|.+++...+|.|++|+.|..|..||-.-.
T Consensus 277 ~~~---------------~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d 341 (626)
T KOG2106|consen 277 NRI---------------SKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD 341 (626)
T ss_pred ceE---------------EeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCc
Confidence 322 233348999999999999999999999999999983100
Q ss_pred ------------------eeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeC
Q 006909 300 ------------------QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD 361 (626)
Q Consensus 300 ------------------~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~ 361 (626)
-.+..+.|......++.+| +.+.+++++.|+.+++|+ ..++.-......++.|+.|+|.
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhps 418 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPS 418 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCc
Confidence 0111234777888999999 899999999999999999 5556555667788999999999
Q ss_pred CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee--c
Q 006909 362 GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG--L 439 (626)
Q Consensus 362 g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--~ 439 (626)
| .+++|+..|...+.|..+......... ..+++.+.|+|+| .+||.|+.|+.|+||-+...-..+.. .
T Consensus 419 g-~va~Gt~~G~w~V~d~e~~~lv~~~~d--------~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 419 G-VVAVGTATGRWFVLDTETQDLVTIHTD--------NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred c-eEEEeeccceEEEEecccceeEEEEec--------CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence 9 999999999999999988554332221 3789999999998 79999999999999987643333222 2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccc
Q 006909 440 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRD 519 (626)
Q Consensus 440 ~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~ 519 (626)
.+..+|+.+.||+|+++|.+.+-|-.|..| ..+.+..... .+. +.+.... ..+.| .++.
T Consensus 489 ~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW-~~~~~~~~ts-~kD----vkW~t~~--c~lGF-----~v~g-------- 547 (626)
T KOG2106|consen 489 CSGSPITHLDWSSDSQFLVSNSGDYEILYW-KPSECKQITS-VKD----VKWATYT--CTLGF-----EVFG-------- 547 (626)
T ss_pred ecCceeEEeeecCCCceEEeccCceEEEEE-ccccCcccce-ecc----eeeeeeE--EEEEE-----EEec--------
Confidence 244899999999999999999999999999 4443221111 111 1111111 11111 1110
Q ss_pred cCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccccccc
Q 006909 520 CSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISA 599 (626)
Q Consensus 520 ~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 599 (626)
..++..+..++-|.+.++++++.. .++|+++..+-.+ ...+......|..|...++-
T Consensus 548 --------------~s~~t~i~a~~rs~~~~~lA~gdd-~g~v~lf~yPc~s--------~rA~~he~~ghs~~vt~V~F 604 (626)
T KOG2106|consen 548 --------------GSDGTDINAVARSHCEKLLASGDD-FGKVHLFSYPCSS--------PRAPSHEYGGHSSHVTNVAF 604 (626)
T ss_pred --------------ccCCchHHHhhhhhhhhhhhcccc-CceEEEEccccCC--------CcccceeeccccceeEEEEE
Confidence 112223556677788888999887 7999999776541 00112223445555544433
Q ss_pred c-cceEEEEecCCceEeeeee
Q 006909 600 T-WGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 600 ~-dg~~ivt~g~Dg~Irvw~~ 619 (626)
. +...+.+.|.|..|..|++
T Consensus 605 l~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 605 LCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eeCCceEEecCCCceEEEEEe
Confidence 2 2344555559999999985
No 106
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=3e-23 Score=208.48 Aligned_cols=410 Identities=19% Similarity=0.239 Sum_probs=272.5
Q ss_pred ccccccccccccCcEEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 246 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg~---~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (626)
.+....++.||++.|.+++|...+. +||++|.|..||||.+.-..... ............. ....
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~-~~~~e~~~t~~~~-~~~f---------- 247 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED-SNEREDSLTTLSN-LPVF---------- 247 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc-ccccccccccccC-Ccee----------
Confidence 3456678899999999999987655 89999999999999986432111 0000000000000 0000
Q ss_pred eecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC--eeeEee--c----CCCCeEEEEEe
Q 006909 247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF--D----HHNYVTCVQFN 317 (626)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~--~~~~~~--~----~~~~v~~~~~~ 317 (626)
....-.+..-.....+.||...|+++.|+|.+ .|+++|.|+++.+|...+. --+... + .........|+
T Consensus 248 --~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~ 325 (764)
T KOG1063|consen 248 --MILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS 325 (764)
T ss_pred --eeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc
Confidence 00000000001113455999999999999999 8999999999999987654 222222 1 23357888999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc
Q 006909 318 PIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 393 (626)
Q Consensus 318 p~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~ 393 (626)
| +++.+++-+..|..++|-..... .....+|-+.|+.++|+|.|.+|++.+.|.+-|+|-.-+.+.. +.-..
T Consensus 326 ~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~---wHEia 401 (764)
T KOG1063|consen 326 P-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE---WHEIA 401 (764)
T ss_pred C-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc---eeeec
Confidence 9 99999999999999999844322 2336789999999999999999999999999999976644333 33344
Q ss_pred ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc--------------------------------ceeee-----
Q 006909 394 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--------------------------------VIHKF----- 436 (626)
Q Consensus 394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~--------------------------------~~~~~----- 436 (626)
+...|+..++|++|-+.. ..+++|.+...+|+|+... ....+
T Consensus 402 RPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~ 480 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETN 480 (764)
T ss_pred ccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccc
Confidence 566678899999999853 6889999999999984210 00000
Q ss_pred ---------------------------------------eecCCCCCeEEEEEcCCCCEEEEEeCC-----ccEEEEECC
Q 006909 437 ---------------------------------------KGLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYD 472 (626)
Q Consensus 437 ---------------------------------------~~~~~~~~v~~~~~sp~g~~l~s~s~d-----g~I~iwd~~ 472 (626)
+..+|.-.|.+++.+|+|+++|+++.. ..|++|+..
T Consensus 481 ~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~ 560 (764)
T KOG1063|consen 481 TGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA 560 (764)
T ss_pred cccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc
Confidence 012366778999999999999998754 469999998
Q ss_pred CCCCCC-CCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCC------CcccCCCcccCCccc
Q 006909 473 ELCFPS-SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETA------PWIRDSERFSLGSWF 545 (626)
Q Consensus 473 ~~~~~~-~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~------~~~~~~~~~~~~~~~ 545 (626)
+-.... ...... .+.-++||||+.+|.+++.|. .+.+|...+.. .....|.+.+-+..|
T Consensus 561 ~W~~~~~L~~HsL-----------TVT~l~FSpdg~~LLsvsRDR---t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW 626 (764)
T KOG1063|consen 561 NWLQVQELEGHSL-----------TVTRLAFSPDGRYLLSVSRDR---TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSW 626 (764)
T ss_pred chhhhheecccce-----------EEEEEEECCCCcEEEEeecCc---eEEeeeeecccchhhhhccccccceEEEEccc
Confidence 763222 111111 233455566666555555542 23333332211 125678888999999
Q ss_pred cCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCcccccccc--c----cceEEEEecCCceEeeeee
Q 006909 546 SNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISA--T----WGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 546 s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~----dg~~ivt~g~Dg~Irvw~~ 619 (626)
+||++++++++. |.++.+|..+......++ +....++....++++- . .+.+++.|-.-|.|.+|+.
T Consensus 627 ~pde~~FaTaSR-DK~VkVW~~~~~~d~~i~-------~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 627 SPDEKYFATASR-DKKVKVWEEPDLRDKYIS-------RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred CcccceeEEecC-CceEEEEeccCchhhhhh-------hhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 999999999999 899999988766111111 1133444445555442 1 2347788889999999996
Q ss_pred c
Q 006909 620 Y 620 (626)
Q Consensus 620 ~ 620 (626)
+
T Consensus 699 ~ 699 (764)
T KOG1063|consen 699 K 699 (764)
T ss_pred c
Confidence 5
No 107
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.8e-23 Score=211.97 Aligned_cols=270 Identities=17% Similarity=0.245 Sum_probs=212.0
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
+|++.-+.++|.|+|.+|+|++.||.|++|+..+.. .
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------------------------------------------e 47 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------------------------------------------E 47 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------------------------------------------c
Confidence 799999999999999999999999999999976521 1
Q ss_pred CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
. -..+.-+...|.+++... ++|++|+.+++|.+|.+..++.-..+ ...-++++++|+. +|++++.||.|-.|++.+
T Consensus 48 ~-P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~ 124 (933)
T KOG1274|consen 48 E-PETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLN 124 (933)
T ss_pred C-CchhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEe
Confidence 1 112222677888887543 48999999999999999888765444 4677899999998 999999999999999999
Q ss_pred CCCC-eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccccc-CCCCeEEEEEcCCCCcEE
Q 006909 338 VCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT-SGNKITGIQFSRDESQRI 415 (626)
Q Consensus 338 ~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~l 415 (626)
+... ....+.+|..+|.++.|+|.+++||+.+.||.+++|++.++.+............. ....++.++|+|+| ..+
T Consensus 125 ~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~l 203 (933)
T KOG1274|consen 125 LDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTL 203 (933)
T ss_pred ccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-CeE
Confidence 8764 45568899999999999999999999999999999999977654321111111111 13567789999997 478
Q ss_pred EEEeCCCcEEEEeCCcceeeeee--cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeecc
Q 006909 416 MITSEDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFS 493 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 493 (626)
++...|+.|++|+.......+.. ..+...+..+.|+|+|+|||+++.||.|.|||+++.. . -.....+.|++|.|
T Consensus 204 a~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~--~-~~~~~~Vc~~aw~p 280 (933)
T KOG1274|consen 204 AVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE--R-HEFKRAVCCEAWKP 280 (933)
T ss_pred EeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch--h-ccccceeEEEecCC
Confidence 88889999999998765555544 3344558999999999999999999999999999731 1 22345667778887
Q ss_pred CCcEE
Q 006909 494 EGVSV 498 (626)
Q Consensus 494 ~g~~~ 498 (626)
+...+
T Consensus 281 ~~n~i 285 (933)
T KOG1274|consen 281 NANAI 285 (933)
T ss_pred CCCee
Confidence 65543
No 108
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-23 Score=211.93 Aligned_cols=277 Identities=17% Similarity=0.210 Sum_probs=213.4
Q ss_pred ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecC-CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE-Eec
Q 006909 270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWA 347 (626)
Q Consensus 270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~ 347 (626)
..+-+.|+..+.|+.|. ...|.+|+..++........ ...|+++.|++ +|.+|++|..+|.|.|||....+.. .+.
T Consensus 179 Y~nlldWss~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 179 YLNLLDWSSANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred hhhHhhcccCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhcccccccc
Confidence 34556788666666654 35799999999987776653 88999999999 9999999999999999998775544 344
Q ss_pred c-CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909 348 D-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426 (626)
Q Consensus 348 ~-~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i 426 (626)
. |...|.+++|. +..+.+|+.++.|..+|++..+..... ...|...|..+.|++|+ .++++|+.|+.+.|
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~------~~~H~qeVCgLkws~d~-~~lASGgnDN~~~I 327 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST------LQGHRQEVCGLKWSPDG-NQLASGGNDNVVFI 327 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh------hhcccceeeeeEECCCC-CeeccCCCccceEe
Confidence 5 78999999998 668999999999999999987765442 33456899999999998 89999999999999
Q ss_pred EeCCcceeeeeecCCCCCeEEEEEcCC-CCEEEEEe--CCccEEEEECCCCCCCCCCccCCccceeeeccCCc--EEEEe
Q 006909 427 LDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV--SVAVQ 501 (626)
Q Consensus 427 wd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~--~~av~ 501 (626)
||.......+....|.+.|.+++|+|- ...||+|+ .|++|++||..++...........++.+.|++... +.+..
T Consensus 328 wd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 328 WDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred ccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecC
Confidence 999776667777779999999999994 56788765 69999999999875555554454445555555442 22233
Q ss_pred cCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909 502 WPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 502 ~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
++.+...+|...+ +.....+.+|...|..+++||||..+++++. |++|++|++-..
T Consensus 408 ~s~n~i~lw~~ps------------~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~-DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPS------------MKLVAELLGHTSRVLYLALSPDGETIVTGAA-DETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccc------------cceeeeecCCcceeEEEEECCCCCEEEEecc-cCcEEeccccCC
Confidence 3333333333322 2223356778888999999999999999998 899999987653
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=8.7e-23 Score=205.24 Aligned_cols=202 Identities=10% Similarity=0.030 Sum_probs=136.8
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC---CCCEEEEEeCCccEEEEECCCCCC
Q 006909 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT---TGKHIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~s~s~dg~I~iwd~~~~~~ 476 (626)
..+.+++.+|+| ++|++|...|.++||++.+.........|...|.++.|+. ..++|++++.|..|+|||+.....
T Consensus 460 ~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 460 FGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred cceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 568899999998 8999999999999999987777666677999999999974 357899999999999999987632
Q ss_pred CCC--CccCCccceeeeccCC-cEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCccc
Q 006909 477 PSS--KQKNSVRSCEHFFSEG-VSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG 553 (626)
Q Consensus 477 ~~~--~~~~~~~~~~~~~~~g-~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 553 (626)
+.. ......++.+.|-.+| ..-.+....|...++........+. +.+..........++.++.-|..++++
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~------~f~r~t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR------LFPRHTQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce------eccccccccccceEEEeeeCCCcceEE
Confidence 221 1222233333443332 2222333333333333222211110 011111122233478889999999999
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccc---ccc--ccccceEEEEecCCceEeeeeecC
Q 006909 554 SATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV---RAI--SATWGLVIVTAGCDGMIKTFHNYG 621 (626)
Q Consensus 554 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--s~~dg~~ivt~g~Dg~Irvw~~~g 621 (626)
++.. |.+|+|+++..+ +....+....+|. ..+ .| .|-||||.-.|.++.+++.+.
T Consensus 613 t~cQ-Drnirif~i~sg-----------Kq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 613 TVCQ-DRNIRIFDIESG-----------KQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred EEec-ccceEEEecccc-----------ceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEecc
Confidence 9999 899999999998 5555555554442 222 34 699999999999999999763
No 110
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.4e-24 Score=216.39 Aligned_cols=244 Identities=16% Similarity=0.266 Sum_probs=199.6
Q ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909 184 IWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 262 (626)
Q Consensus 184 V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (626)
+..++|+. +.++|||++..|.|.+||+... +..+.+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------------------------------------------~rnk~l~ 127 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS------------------------------------------IRNKLLT 127 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcc------------------------------------------ccchhhh
Confidence 44566653 4569999999999999999751 1145567
Q ss_pred eeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909 263 ELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 339 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~ 339 (626)
.|..|...++++.|++. ++|++||.||+|++||++......++. ....|..+.|+|..+++|+++...|.+.+||++
T Consensus 128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence 88899999999999975 499999999999999999888777774 677999999999999999999999999999998
Q ss_pred CCe--EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909 340 EKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 417 (626)
Q Consensus 340 ~~~--~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~ 417 (626)
.-. ...+..|.++|.|+.|+|++.+||+|+.|+.|+|||..+...... ...+. ..+|.++.|-|..+.+|++
T Consensus 208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~-~tInT-----iapv~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK-HTINT-----IAPVGRVKWRPARSYHLAT 281 (839)
T ss_pred CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce-eEEee-----cceeeeeeeccCccchhhh
Confidence 754 345789999999999999999999999999999999987654333 22222 2789999999998778887
Q ss_pred EeC--CCcEEEEeCCcceeeee-ecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCCCC
Q 006909 418 TSE--DSKLRILDGVDVIHKFK-GLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 418 ~s~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
++. |-.|+|||++.+...+. ...|...++.++|.. |...+.+++.||+|..-.+++..
T Consensus 282 csmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 282 CSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred hhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 764 67999999986544433 345888999999954 55678899999999887777653
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3e-22 Score=184.64 Aligned_cols=292 Identities=13% Similarity=0.191 Sum_probs=211.0
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC--CCcEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI--DGKVR 334 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~--dg~v~ 334 (626)
++.+.+..-...|+++.|+++| .+++++.|.+++|||..+++.++++. +.-.+..++|.. ..+.++.++. |.+||
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceE
Confidence 3445555567899999999998 88889999999999999999999986 445678888877 6677777776 88999
Q ss_pred EEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909 335 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 335 iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
..++.+.+.++ +.+|...|++++.+|-+..+++++.|++|++||++..+++.. +.. ..-..++|.|.| -
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-l~~--------~~~pi~AfDp~G-L 153 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-LNL--------SGRPIAAFDPEG-L 153 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-Eec--------CCCcceeECCCC-c
Confidence 99999887665 779999999999999999999999999999999997665432 111 233457899998 6
Q ss_pred EEEEEeCCCcEEEEeCCc----ceeeeeec-CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccce
Q 006909 414 RIMITSEDSKLRILDGVD----VIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSC 488 (626)
Q Consensus 414 ~l~~~s~dg~i~iwd~~~----~~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 488 (626)
++|++...+.|++||++. +...+... ......+.+.|||||++|+.++..+.+++.|.-+|... ..
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~---------~t 224 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVK---------ST 224 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEe---------ee
Confidence 777777777999999873 34444442 34667899999999999999999999999997765200 00
Q ss_pred eeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909 489 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT 568 (626)
Q Consensus 489 ~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~ 568 (626)
.... ++ ......+..|+|||+++++++. ||+|.+|++.
T Consensus 225 fs~~-----------~~------------------------------~~~~~~~a~ftPds~Fvl~gs~-dg~i~vw~~~ 262 (311)
T KOG1446|consen 225 FSGY-----------PN------------------------------AGNLPLSATFTPDSKFVLSGSD-DGTIHVWNLE 262 (311)
T ss_pred Eeec-----------cC------------------------------CCCcceeEEECCCCcEEEEecC-CCcEEEEEcC
Confidence 0000 11 1111134468899999999888 7999999999
Q ss_pred cCCCCCCCChhhHHHHhhhcc-CCccccccccccceEEEEecCCceEeeee--ecCccc
Q 006909 569 IDSDGYCQDPQQQRLQQQCLN-NVDDVRAISATWGLVIVTAGCDGMIKTFH--NYGLPI 624 (626)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~--~~g~p~ 624 (626)
++. ....... +.++...+.- +.++..-++.|..+-+|- .+++|-
T Consensus 263 tg~-----------~v~~~~~~~~~~~~~~~f-nP~~~mf~sa~s~l~fw~p~~~~~~~ 309 (311)
T KOG1446|consen 263 TGK-----------KVAVLRGPNGGPVSCVRF-NPRYAMFVSASSNLVFWLPDEDALPA 309 (311)
T ss_pred CCc-----------EeeEecCCCCCCcccccc-CCceeeeeecCceEEEEeccccccCC
Confidence 883 1111111 2222222221 344444555557777775 455553
No 112
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.8e-23 Score=190.25 Aligned_cols=284 Identities=17% Similarity=0.289 Sum_probs=213.1
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCc---cCCCCCeeeecC--CCCCCc
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFG---SNAKEGKIKFGK--KKSSHV 245 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~ 245 (626)
-.+..++.||.+.|++++|++.+.+++|++.|++..||...-.-.......+.+... ....+....... .....-
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 345667889999999999999999999999999999997321100000000000000 000000000000 000000
Q ss_pred eeecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCE
Q 006909 246 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~ 323 (626)
.-..|+..+.+|.+.|.+..|...+ .+++++.|.+..+||++++..+..+ +|....+.++-+| +.++
T Consensus 260 ----------tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrL 328 (481)
T KOG0300|consen 260 ----------TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRL 328 (481)
T ss_pred ----------eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceE
Confidence 0135788899999999999998877 8999999999999999999999988 5888999999999 9999
Q ss_pred EEEEeCCCcEEEEeCCCC--eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 324 FISGSIDGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
+++.+.|.+.++||.+.. .+..+.+|.+.|+++.|..+. .+++|+.|.+|++||+++...++..+... .+
T Consensus 329 VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtd-------S~ 400 (481)
T KOG0300|consen 329 VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTD-------SP 400 (481)
T ss_pred EEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecC-------Cc
Confidence 999999999999999852 244588999999999998765 68999999999999999998877766543 67
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc-eeee---eecCCCCCeEEEEEcCCC--CEEEEEeCCccEEEEECCCC
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKF---KGLPKSGSQMSASFTTTG--KHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~-~~~~---~~~~~~~~v~~~~~sp~g--~~l~s~s~dg~I~iwd~~~~ 474 (626)
+..++.+..+ ..|+.--.+..|++||+... ...+ ....|...|.+++|..+- .-|++++-|..+.=|++...
T Consensus 401 ~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 401 ANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cceeEeecCC-ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 8899999875 58888889999999997621 1111 234578889999996543 45889999999999998764
No 113
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.7e-23 Score=213.53 Aligned_cols=240 Identities=20% Similarity=0.312 Sum_probs=180.1
Q ss_pred eeec-cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCC--------------------------------C--------
Q 006909 262 QELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--------------------------------N-------- 299 (626)
Q Consensus 262 ~~~~-~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~--------------------------------~-------- 299 (626)
+.+. .|.+.|+++.|++|| +||+|+.|+.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4455 899999999999999 999999999999997654 0
Q ss_pred --------------------eeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEE
Q 006909 300 --------------------QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICY 358 (626)
Q Consensus 300 --------------------~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~ 358 (626)
+++..| +|...|..+.|+ ..++|++++.|.+||+|++....++..+.|.+.|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence 001112 488889999999 578999999999999999999999999999999999999
Q ss_pred ee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeee
Q 006909 359 IP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK 437 (626)
Q Consensus 359 sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 437 (626)
+| |.++|++|+-||.|+||++...+.... ..++ .-|++++|.|+| +..++|+.+|.+++|++........
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~-------~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLR-------DLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEee-hhhh-------hhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEe
Confidence 99 889999999999999999987765432 1111 679999999997 8999999999999999874432222
Q ss_pred --ecCC------CCCeEEEEEcCCC-CEEEEEeCCccEEEEECCCC--CCCCCCcc-CCccceeeeccCCcEEEEecCCC
Q 006909 438 --GLPK------SGSQMSASFTTTG-KHIISIGDDCRVYVWNYDEL--CFPSSKQK-NSVRSCEHFFSEGVSVAVQWPGI 505 (626)
Q Consensus 438 --~~~~------~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~~~--~~~~~~~~-~~~~~~~~~~~~g~~~av~~s~~ 505 (626)
...+ ...|+++.|.|.. ..|++.+.|..|+|+|..+. ....++.. ........|+.+|..+..+--+.
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 1111 2379999998744 35777788999999999554 22222211 11223345566666655554444
Q ss_pred Ccccccc
Q 006909 506 GTEQKSL 512 (626)
Q Consensus 506 ~~~l~~~ 512 (626)
..++|..
T Consensus 569 ~VYiW~~ 575 (712)
T KOG0283|consen 569 WVYIWKN 575 (712)
T ss_pred eEEEEeC
Confidence 4455543
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.1e-22 Score=204.64 Aligned_cols=282 Identities=20% Similarity=0.308 Sum_probs=219.0
Q ss_pred ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
...+.+++.||...|..+++.+. ..++++|.||++++|+-....
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~----------------------------------- 46 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQ----------------------------------- 46 (745)
T ss_pred cceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcc-----------------------------------
Confidence 44567889999999999998754 489999999999999875421
Q ss_pred CCccccccCCCceeeccCccceEE-EEEcC-C-CeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLD-LAWSN-S-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~-l~~s~-~-~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~ 325 (626)
....+.+.+|.+-|.. +++-+ + +.+++|+.|++|.+|...+..++..+ +|...|.|+.... ++. ++
T Consensus 47 --------~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~i 116 (745)
T KOG0301|consen 47 --------YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LI 116 (745)
T ss_pred --------cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eE
Confidence 2334567788888877 77765 3 48999999999999999999998888 5999999999775 554 99
Q ss_pred EEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909 326 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
+||.|.++++|-...- ...+.+|...|.++..-|++ .+++|+.|.+|++|.-.+ . ... ..+|...|+++
T Consensus 117 SgSWD~TakvW~~~~l-~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~--~-l~t------f~gHtD~VRgL 185 (745)
T KOG0301|consen 117 SGSWDSTAKVWRIGEL-VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT--L-LKT------FSGHTDCVRGL 185 (745)
T ss_pred ecccccceEEecchhh-hcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc--h-hhh------hccchhheeee
Confidence 9999999999965432 22378999999999999988 899999999999997532 1 111 34456899999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCc
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 485 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 485 (626)
++-+++ .+++++.||.|++|++ +....+..++|...+.+++..+++..++++++|++++||+......... ++...
T Consensus 186 ~vl~~~--~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~-lPtts 261 (745)
T KOG0301|consen 186 AVLDDS--HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVIT-LPTTS 261 (745)
T ss_pred EEecCC--CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEe-cCccc
Confidence 999985 7999999999999998 4444555566999999999888899999999999999999884322222 23322
Q ss_pred cceeeeccCCcEEEEecCCCCccccccc
Q 006909 486 RSCEHFFSEGVSVAVQWPGIGTEQKSLC 513 (626)
Q Consensus 486 ~~~~~~~~~g~~~av~~s~~~~~l~~~~ 513 (626)
+-+..+-++|.+ +++.|++-.++++..
T Consensus 262 iWsa~~L~NgDI-vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 262 IWSAKVLLNGDI-VVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEEEeeCCCE-EEeccCceEEEEEec
Confidence 333345556664 566666666666544
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=186.05 Aligned_cols=283 Identities=18% Similarity=0.202 Sum_probs=197.9
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe-----eeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-----CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
+..+.+|...|++++|+.+| +|++++.|++|++|+++... +++.--.-+..+.+.|.|.....+++.-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 56788999999999999998 99999999999999997532 2222212346789999994444555666667899
Q ss_pred EEeCCCCe-------EEE------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 335 IWGVCEKR-------VVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 335 iwd~~~~~-------~~~------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
+|.+...+ .+. ...|.-.+..+-....+++|++++.|..|.+|++++..+ . .+.. ....
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L-~-~idt------nq~~ 230 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLL-Q-SIDT------NQSS 230 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCcee-e-eecc------cccc
Confidence 99764322 111 123444566666777889999999999999999994332 2 2221 1245
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeC--------CcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILDG--------VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~--------~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
-+..+.||+| +++++++..-.|++|.. .+....+...+|...|..++|+++...+++.|.||+++|||++-
T Consensus 231 n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 231 NYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 6678899998 89999999999999983 24556667777999999999999999999999999999999864
Q ss_pred CC----CCCCC-------c-cCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccC
Q 006909 474 LC----FPSSK-------Q-KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSL 541 (626)
Q Consensus 474 ~~----~~~~~-------~-~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 541 (626)
.. -+... + .+....-+..+|+|.++|+++..+-..+..-... .......-++..+.
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~------------~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK------------DYPELEDIHSTTIS 377 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc------------cchhHHHhhcCcee
Confidence 31 11110 0 1112224567788888777754443332221110 11123455677899
Q ss_pred CccccCCCCcccccCCCCCCCCCCC
Q 006909 542 GSWFSNDGPCRGSATWPAEKLPLWD 566 (626)
Q Consensus 542 ~~~~s~dg~~l~s~~~~d~~i~vwd 566 (626)
+++|++||+++++.+ |..+++..
T Consensus 378 ~is~~~~g~~~atcG--dr~vrv~~ 400 (420)
T KOG2096|consen 378 SISYSSDGKYIATCG--DRYVRVIR 400 (420)
T ss_pred eEEecCCCcEEeeec--ceeeeeec
Confidence 999999999999987 46666653
No 116
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=2.2e-22 Score=182.76 Aligned_cols=225 Identities=20% Similarity=0.363 Sum_probs=174.9
Q ss_pred ccccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 178 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 178 ~~H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
+.|.+.|+++...+ .|+|+++|+.||.|.+||+++...... ..+++ +. . .+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-----s~li~--k~------------~------c~--- 91 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-----SGLIA--KH------------K------CI--- 91 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh-----cccee--he------------e------ee---
Confidence 35999999999987 689999999999999999987321000 00000 00 0 00
Q ss_pred cCCCceeeccCccceEEEEEcC--CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCC--CCEEEEEeCCCc
Q 006909 257 EESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID--DNYFISGSIDGK 332 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~--~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~s~dg~ 332 (626)
-....-.+|.-.|..+.|-| .|.+.+++.|.+++|||..+-+....|...+.|.+-+++|.. ..++++|..+-.
T Consensus 92 --v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 92 --VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred --ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCc
Confidence 01122347999999999987 469999999999999999999999999999999999999843 346788888889
Q ss_pred EEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCE-EEEEecCCcEEEEEcCCCceeeeEEeecc--------ccccCCCCe
Q 006909 333 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHD--------RKKTSGNKI 402 (626)
Q Consensus 333 v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~-l~~g~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~~~~i 402 (626)
|++.|+.+|.... +.+|.+.|.++.|+|...+ |++|+.||.|++||++...--...+..+. ....|.+.+
T Consensus 170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 9999999988764 7899999999999997765 67899999999999986533232222222 234577899
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCcce
Q 006909 403 TGIQFSRDESQRIMITSEDSKLRILDGVDVI 433 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~ 433 (626)
.+++|+.++ .++++.+.|..+++|+..+..
T Consensus 250 ngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 250 NGLAWTSDA-RYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eeeeecccc-hhhhhccCccceEEeecccCc
Confidence 999999998 799999999999999965433
No 117
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6e-22 Score=190.52 Aligned_cols=280 Identities=15% Similarity=0.186 Sum_probs=219.5
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
.+.|++|.|+|....|++|+.||+++||.+.... ...
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-------------------------------------------N~~ 249 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-------------------------------------------NPK 249 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCcc-------------------------------------------Chh
Confidence 5789999999999999999999999999987521 234
Q ss_pred ceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec---C-CCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 261 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---H-HNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~---~-~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
++.+.-...+|.+.+|.|+| .+++++....++.||+.+.+..+.-. + ...+.....+| ++++|+..+..|.|.
T Consensus 250 lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 250 LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIH 328 (514)
T ss_pred heeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEE
Confidence 56666667899999999988 68899999999999999887655432 2 23577788899 999999999999999
Q ss_pred EEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 335 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 335 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
+....+++.+......+.|..++|+.+|+.|++.+.+|.|.+||++...+.. .+.-.+. -.-++++.++++ .+
T Consensus 329 lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~-rf~D~G~-----v~gts~~~S~ng-~y 401 (514)
T KOG2055|consen 329 LLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLH-RFVDDGS-----VHGTSLCISLNG-SY 401 (514)
T ss_pred eehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEE-EEeecCc-----cceeeeeecCCC-ce
Confidence 9999999999989999999999999999999999999999999999885433 3333321 234677888987 69
Q ss_pred EEEEeCCCcEEEEeCCcc------eeeeeecCCCCCeEEEEEcCCCCEEEEEeC--CccEEEEECCCC----CCCCCCcc
Q 006909 415 IMITSEDSKLRILDGVDV------IHKFKGLPKSGSQMSASFTTTGKHIISIGD--DCRVYVWNYDEL----CFPSSKQK 482 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~--dg~I~iwd~~~~----~~~~~~~~ 482 (626)
||+|+..|.|.|||..+. ........-...|+++.|+||++.||.+|. +..+++-.+.+. ..|.....
T Consensus 402 lA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~ 481 (514)
T KOG2055|consen 402 LATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTK 481 (514)
T ss_pred EEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCc
Confidence 999999999999996532 222222224567999999999999988874 678999888875 22333334
Q ss_pred CCccceeeeccCCcEEEEecCCCCccccc
Q 006909 483 NSVRSCEHFFSEGVSVAVQWPGIGTEQKS 511 (626)
Q Consensus 483 ~~~~~~~~~~~~g~~~av~~s~~~~~l~~ 511 (626)
-.-..|++|+|.|-++|++--.....||.
T Consensus 482 vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 482 VGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred ccceEEEEecCCCceEEeecCCCceeeEe
Confidence 44567788888888888774444444443
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=8.1e-23 Score=204.03 Aligned_cols=316 Identities=14% Similarity=0.194 Sum_probs=235.7
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
....++.|.+.|+.+....+|+.|+++|.|-+|++|+...+.
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-------------------------------------- 106 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-------------------------------------- 106 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------------------------------------
Confidence 356678999999999999999999999999999999987632
Q ss_pred cccccCCCceeeccCccceEEEEE-cCCC-eEEEEeCCCcEEEeccCCC--eeeEee----------cCCCCeEEEEEee
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAW-SNSN-YLLSCSMDKTVRMWQVGCN--QCLNVF----------DHHNYVTCVQFNP 318 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~-s~~~-~l~s~s~d~~v~iwd~~~~--~~~~~~----------~~~~~v~~~~~~p 318 (626)
..+..++..|...|.|+++ .+++ .+++|+-|+.|.+||++++ +.+..+ ++...|.+++.++
T Consensus 107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 1346778889999999999 5555 8999999999999999987 333332 3667899999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCC-eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccccc
Q 006909 319 IDDNYFISGSIDGKVRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 397 (626)
Q Consensus 319 ~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 397 (626)
++..|++|+..+.+++||.+++ +++.+.+|...|.++..++||..+++++.||+|++||+...++... +..|
T Consensus 182 -t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T-~~vH----- 254 (735)
T KOG0308|consen 182 -TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT-YIVH----- 254 (735)
T ss_pred -cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee-EEec-----
Confidence 8899999999999999999985 4667889999999999999999999999999999999987776544 3333
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909 398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 477 (626)
Q Consensus 398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 477 (626)
...|.++..+|+= ..+.+|+.||.|..=|+++............+|..+..+...+-+-+++.|+.|+-|...-..
T Consensus 255 -~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~-- 330 (735)
T KOG0308|consen 255 -KEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI-- 330 (735)
T ss_pred -cCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc--
Confidence 3669999999885 799999999999999988643333333356677777776555555667789999999876421
Q ss_pred CCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCC
Q 006909 478 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATW 557 (626)
Q Consensus 478 ~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~ 557 (626)
++++.|.... .+.......... ...+.....++..+...+.-.|-+.+.+-.-
T Consensus 331 ------------~l~~s~~~~~-~~T~~~~~~~~~--------------~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa 383 (735)
T KOG0308|consen 331 ------------ALSVSGDLDF-FSTDSNNHSCDL--------------TNTPDSVIPGGAAIKKHAMLNDKRHVLTKDA 383 (735)
T ss_pred ------------ccccCCCCCc-ccccCCCccccc--------------cCCCceeccCchhhhhhhhhcCcceEeeecC
Confidence 2222232222 111111111110 0011112223334666677778888888666
Q ss_pred CCCCCCCCCcccC
Q 006909 558 PAEKLPLWDVTID 570 (626)
Q Consensus 558 ~d~~i~vwd~~~~ 570 (626)
.|.+.+||+-..
T Consensus 384 -~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 384 -KGNVALWDILAC 395 (735)
T ss_pred -CCCEEEEEeeee
Confidence 688999998765
No 119
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=2.5e-22 Score=202.02 Aligned_cols=341 Identities=16% Similarity=0.185 Sum_probs=231.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 263 (626)
Q Consensus 184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (626)
.-++.|+|....|.+.-.|..++|||+.......+. ...+.....+|.++.-|.
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~------------------------~s~lyHS~ciW~Ve~~p~-- 380 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC------------------------SSMLYHSACIWDVENLPC-- 380 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccce------------------------eeeeeccceeeeeccccc--
Confidence 347889999999999999999999999874321110 111112223344333222
Q ss_pred eccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCC---eeeEe-----------------------------------e
Q 006909 264 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN---QCLNV-----------------------------------F 305 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~---~~~~~-----------------------------------~ 305 (626)
.-|...-. .-|.+.+++|+.|++|++||+..+ +..+. .
T Consensus 381 -nv~~~~~a---clp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~ 456 (1080)
T KOG1408|consen 381 -NVHSPTAA---CLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTC 456 (1080)
T ss_pred -cccCcccc---cCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhc
Confidence 11222111 124567999999999999998752 11110 1
Q ss_pred cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE-EEeccCCCCeEEEEEee---CCCEEEEEecCCcEEEEEcCC
Q 006909 306 DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASG 381 (626)
Q Consensus 306 ~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~i~~i~~sp---~g~~l~~g~~dg~i~i~d~~~ 381 (626)
.....+.+++.+| ++++|++|..-|++++|++..-+. .....|...|.|+.|+. ..++|++++.|.-|++||+..
T Consensus 457 d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 457 DSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 1234589999999 999999999999999999987554 45778999999999986 357899999999999999987
Q ss_pred CceeeeEEeeccccccCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEeCC--cceeeeeecC---CCCCeEEEEEcCCCC
Q 006909 382 NDLKLEKVDFHDRKKTSGNKITGIQFSRDES-QRIMITSEDSKLRILDGV--DVIHKFKGLP---KSGSQMSASFTTTGK 455 (626)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~~l~~~s~dg~i~iwd~~--~~~~~~~~~~---~~~~v~~~~~sp~g~ 455 (626)
+......+ ..|...|+++.|...|. ..+++++.|..|.+--.+ .....+..+. ....+..++..|+.+
T Consensus 536 ny~l~qtl------d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k 609 (1080)
T KOG1408|consen 536 NYDLVQTL------DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK 609 (1080)
T ss_pred ccchhhhh------cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc
Confidence 66544433 34458999999987653 467778888776543222 1122222221 245688999999999
Q ss_pred EEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccC
Q 006909 456 HIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRD 535 (626)
Q Consensus 456 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 535 (626)
++++++.|..|+||++++++........ -..+|..+-+...|.|.+++..+++..-. +.....-+....+.+
T Consensus 610 ~v~t~cQDrnirif~i~sgKq~k~FKgs-------~~~eG~lIKv~lDPSgiY~atScsdktl~-~~Df~sgEcvA~m~G 681 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIESGKQVKSFKGS-------RDHEGDLIKVILDPSGIYLATSCSDKTLC-FVDFVSGECVAQMTG 681 (1080)
T ss_pred eEEEEecccceEEEeccccceeeeeccc-------ccCCCceEEEEECCCccEEEEeecCCceE-EEEeccchhhhhhcC
Confidence 9999999999999999998433222111 11235555555556666665555442211 111111233455788
Q ss_pred CCcccCCccccCCCCcccccCCCCCCCCCCCcccC
Q 006909 536 SERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 536 ~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
|+..|+++.|++|-+.|.+++. |+.|+||.++..
T Consensus 682 HsE~VTG~kF~nDCkHlISvsg-DgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 682 HSEAVTGVKFLNDCKHLISVSG-DGCIFVWKLPLT 715 (1080)
T ss_pred cchheeeeeecccchhheeecC-CceEEEEECchh
Confidence 9999999999999999999988 899999998753
No 120
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.8e-22 Score=195.41 Aligned_cols=268 Identities=17% Similarity=0.286 Sum_probs=215.3
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
+|..-|.++.+|...+++.||+. |.|+|||+..... .
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~------------------------------------------k 453 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN------------------------------------------K 453 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC------------------------------------------C
Confidence 79999999999999999999986 6799999976211 2
Q ss_pred CCceeec--cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 259 SPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 259 ~~~~~~~--~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
.|+..+. .....|.++...||| .|++|+.-.++.|||+.......... ..-.+.+++.+| |.+..+++..||.
T Consensus 454 ~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGn 532 (705)
T KOG0639|consen 454 SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGN 532 (705)
T ss_pred CccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCc
Confidence 2333332 235678899999998 89999999999999997665433332 223577889999 9999999999999
Q ss_pred EEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 333 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 333 v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
|.|||+....++. +.+|.+.+.||.++++|..|.+|+-|.+++.||++....... ..+ ...|.++.++|.+
T Consensus 533 I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq-hdF-------~SQIfSLg~cP~~ 604 (705)
T KOG0639|consen 533 IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-HDF-------SSQIFSLGYCPTG 604 (705)
T ss_pred EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh-hhh-------hhhheecccCCCc
Confidence 9999999877664 889999999999999999999999999999999998765432 111 2679999999998
Q ss_pred CcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeee
Q 006909 412 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF 491 (626)
Q Consensus 412 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 491 (626)
.++++|-.++.+.|...... ..+..+-|...|.++.|.+.|+++++.+.|+-+..|...-+...........+.++.+
T Consensus 605 -dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDI 682 (705)
T KOG0639|consen 605 -DWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI 682 (705)
T ss_pred -cceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeee
Confidence 79999999999999986544 4455566899999999999999999999999999999988755544444444455567
Q ss_pred ccCCcEEEE
Q 006909 492 FSEGVSVAV 500 (626)
Q Consensus 492 ~~~g~~~av 500 (626)
+.+..++..
T Consensus 683 S~ddkyIVT 691 (705)
T KOG0639|consen 683 SFDDKYIVT 691 (705)
T ss_pred ccCceEEEe
Confidence 777666444
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.3e-22 Score=195.31 Aligned_cols=220 Identities=19% Similarity=0.329 Sum_probs=178.7
Q ss_pred cccccccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
....-+|.||++.=+.++|++... +|++|+.|++|++||+......
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~--------------------------------- 213 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE--------------------------------- 213 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC---------------------------------
Confidence 344457889999889999999655 8999999999999999863210
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCC--CeeeEee-cCCCCeEEEEEeeCCCCEE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGC--NQCLNVF-DHHNYVTCVQFNPIDDNYF 324 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~--~~~~~~~-~~~~~v~~~~~~p~~~~~l 324 (626)
...-.+...+.+|...|..++|++- ..+++++.|+.+.|||+++ .++.... .|...|+|++|+|.++..|
T Consensus 214 -----~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il 288 (422)
T KOG0264|consen 214 -----DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL 288 (422)
T ss_pred -----CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence 0013456788899999999999985 3899999999999999995 3333333 4999999999999999999
Q ss_pred EEEeCCCcEEEEeCCC--CeEEEeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceee----------eEEee
Q 006909 325 ISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKL----------EKVDF 391 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~~--~~~~~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~----------~~~~~ 391 (626)
|+||.|++|.+||+|. ..+..+.+|...|..+.|+|. ...|++++.|+.+.+||+..-.... +.+-.
T Consensus 289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~ 368 (422)
T KOG0264|consen 289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFI 368 (422)
T ss_pred EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEE
Confidence 9999999999999986 456778999999999999995 4678889999999999996433221 11111
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909 392 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
..+|...|..+.|+|+.+..|++.+.|+.+.||....
T Consensus 369 ---HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 369 ---HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ---ecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2356789999999999998999999999999999664
No 122
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.3e-21 Score=177.05 Aligned_cols=241 Identities=16% Similarity=0.241 Sum_probs=195.1
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
....+....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 62 ~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~------------------------------------- 104 (347)
T KOG0647|consen 62 QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG------------------------------------- 104 (347)
T ss_pred cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-------------------------------------
Confidence 3444566789999999999999999999999999999999973
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC---eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
.+..+..|.++|..+.|-+.. .|+|||.|++|+.||.+....+.++..++.+.++.. -..+++.+
T Consensus 105 ---------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv---~~pm~vVa 172 (347)
T KOG0647|consen 105 ---------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV---LYPMAVVA 172 (347)
T ss_pred ---------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc---cCceeEEE
Confidence 356677899999999998642 799999999999999999999999999999999987 34688888
Q ss_pred eCCCcEEEEeCCCCeEEE---eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeecccccc---CCC
Q 006909 328 SIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKT---SGN 400 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~---~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~---~~~ 400 (626)
..++.|.+|+++.+.... ....+-.+.|++..++....+.|+-.|.+.+..+........ .+..|..... .-.
T Consensus 173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 899999999997755332 234566789999999999999999999999999887533211 3444432111 124
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909 401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s 461 (626)
.|.+|+|+|.- ..|++++.||++.+||-....+......+..+|++.+|+.+|.+++-+.
T Consensus 253 aVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 253 AVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EecceEeeccc-ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 68899999985 6999999999999999664444444466899999999999999887653
No 123
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=5.4e-21 Score=196.19 Aligned_cols=363 Identities=13% Similarity=0.169 Sum_probs=262.3
Q ss_pred EEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 184 IWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 184 V~~l~fspd--g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
|+++. +|. -+.++.|+.+|.++||++.+ ++.+
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt---------------------------------------------~K~v 195 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRT---------------------------------------------GKVV 195 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEecc---------------------------------------------CcEE
Confidence 77776 453 34788899999999999998 4568
Q ss_pred eeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEeecCC-CCeEEEEEeeCCCC-EEEEEeCCCcEEEEeC
Q 006909 262 QELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN-YFISGSIDGKVRIWGV 338 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~p~~~~-~l~s~s~dg~v~iwd~ 338 (626)
.++.++...|+++.-+|- ..++.|..+|+|.+++++.++.+.+|+|. +.|++++|.. ||+ .+++|+..|.+.+||+
T Consensus 196 ~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt-DG~p~las~~~~G~m~~wDL 274 (910)
T KOG1539|consen 196 YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT-DGNPLLASGRSNGDMAFWDL 274 (910)
T ss_pred EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEecc-CCCeeEEeccCCceEEEEEc
Confidence 899999999999998885 48999999999999999999999999986 9999999998 665 5677777799999999
Q ss_pred CCCeEEE--eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 339 CEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 339 ~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
...++.. ...|.+.|....|.|....+++++.|..+++|-..++......+.. ..+|..+..++.|......++.
T Consensus 275 e~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~---R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 275 EKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRS---RGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred CCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheee---ccCCCCCchheeeeccCcEEEE
Confidence 9887765 3367789999999999999999999999999987755543322222 3456678888888744447888
Q ss_pred EEeCCCcEEEEeCC-----------------------------------------------------------------c
Q 006909 417 ITSEDSKLRILDGV-----------------------------------------------------------------D 431 (626)
Q Consensus 417 ~~s~dg~i~iwd~~-----------------------------------------------------------------~ 431 (626)
+++.|++.+.+++. +
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 88888877666421 0
Q ss_pred cee-eeeec-----CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCC
Q 006909 432 VIH-KFKGL-----PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI 505 (626)
Q Consensus 432 ~~~-~~~~~-----~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~ 505 (626)
... .+... .....+++++.++.|++.+.|...|.|-+|+++++........ ..-+++.+.+++-...
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-------~~ah~~~V~gla~D~~ 504 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-------SPAHKGEVTGLAVDGT 504 (910)
T ss_pred cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-------CccccCceeEEEecCC
Confidence 000 00000 0125678899999999999999999999999999843322210 0123455666665555
Q ss_pred CcccccccCCCccccCccccccCCCC-cccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHH
Q 006909 506 GTEQKSLCSSSLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQ 584 (626)
Q Consensus 506 ~~~l~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 584 (626)
+..+.+.+.++. ..+|+--.... .....+..+..+..+.....++.+-. +..|++.|..+. +..
T Consensus 505 n~~~vsa~~~Gi---lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d-df~I~vvD~~t~-----------kvv 569 (910)
T KOG1539|consen 505 NRLLVSAGADGI---LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD-DFSIRVVDVVTR-----------KVV 569 (910)
T ss_pred CceEEEccCcce---EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC-ceeEEEEEchhh-----------hhh
Confidence 555555444433 44555432221 11112333555555666666666655 688999999887 556
Q ss_pred hhhccCCcccc--ccccccceEEEEecCCceEeeeee
Q 006909 585 QQCLNNVDDVR--AISATWGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 585 ~~~~~~~~~~~--~~s~~dg~~ivt~g~Dg~Irvw~~ 619 (626)
+.+..|...++ .||+ ||++|++|+.|++||+|++
T Consensus 570 R~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 570 REFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDL 605 (910)
T ss_pred HHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEec
Confidence 66666666665 4566 8999999999999999995
No 124
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=7.6e-22 Score=185.19 Aligned_cols=256 Identities=23% Similarity=0.322 Sum_probs=196.5
Q ss_pred ccccCcEEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 178 QAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~--~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
-+|.+.|+.+.-++-|+ +.|+=+..|.|.||++...-.. +...+ . .+-.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~---l~~~~--------------------~------~~~~ 198 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNA---LSEPG--------------------L------EVKD 198 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhh---hcCcc--------------------c------cccc
Confidence 37899999999888665 6677788999999998752110 00000 0 0001
Q ss_pred ccCCCceeeccCccceEEEEEcC--CCeEEEEeCCCcEEEeccCCCeeeE----eecCCCCeEEEEEeeCCCCEEEEEeC
Q 006909 256 IEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLN----VFDHHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~--~~~l~s~s~d~~v~iwd~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
....|+.++.+|...=+.|+||| .|.|++|..-+.|++|...++.-.. ...|+..|..++|+|.....|++||.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 23678999999999999999998 4689999999999999998765432 22599999999999988899999999
Q ss_pred CCcEEEEeCCCC---eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee--eEEeeccccccCCCCeEE
Q 006909 330 DGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 330 dg~v~iwd~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~i~~ 404 (626)
||+|+|||++.+ ..+....|...|+.|+|+..-.+|++|+.||+++|||++..+... ..+.. |..+|++
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~------Hk~pIts 352 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY------HKAPITS 352 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe------ccCCeeE
Confidence 999999999987 566778999999999999988899999999999999998765442 23333 3589999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCc------------------ceeeeeecCCCCCeEEEEEcCCC-CEEEEEeCCcc
Q 006909 405 IQFSRDESQRIMITSEDSKLRILDGVD------------------VIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCR 465 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~ 465 (626)
+.|+|.....|++++.|.+|.|||+.- +-+.+-.+.....+..+.|++.- .+|++.+.||
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG- 431 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG- 431 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-
Confidence 999998878999999999999999641 01122223234567778898754 4677777777
Q ss_pred EEEE
Q 006909 466 VYVW 469 (626)
Q Consensus 466 I~iw 469 (626)
+.||
T Consensus 432 fnVf 435 (440)
T KOG0302|consen 432 FNVF 435 (440)
T ss_pred eeEE
Confidence 4444
No 125
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=8.8e-22 Score=194.79 Aligned_cols=290 Identities=17% Similarity=0.348 Sum_probs=212.0
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcc----------eeeeecCCCCCc--cCCCCCeeeec
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA----------SCKSFTDDGGFG--SNAKEGKIKFG 238 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~----------~~~~~~~~~~~~--~~~~~~~~~~~ 238 (626)
..+...++||++.|.|+...|.|.+||+|+.||+|+||.+.++.+ .++.|.+..... +.+....+.+.
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 345566789999999999999999999999999999999999866 466677665532 22222222211
Q ss_pred CCCCC-C--------ceeecCC--------cccccc-----CCCceeeccCccceEEEEEcCCC-eEEEEeC---CCcEE
Q 006909 239 KKKSS-H--------VPVVIPD--------EVFQIE-----ESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---DKTVR 292 (626)
Q Consensus 239 ~~~~~-~--------~~~~~~~--------~~~~~~-----~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~---d~~v~ 292 (626)
..... . .....+. -.|... ..-++..-.|...|..+.|+..| +|++..- ...|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 11100 0 0000000 022211 11234555789999999999888 8887654 35699
Q ss_pred EeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEec
Q 006909 293 MWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSI 370 (626)
Q Consensus 293 iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~ 370 (626)
|.++.......-|. ..+.|.++.|+| ...+|++++. ..|+|||+..++++. +......|..++.+|.|..|++|+.
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 99998777766664 677899999999 7777777664 689999998876654 4555677999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC-------c----ceeeeeec
Q 006909 371 TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-------D----VIHKFKGL 439 (626)
Q Consensus 371 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-------~----~~~~~~~~ 439 (626)
|+.+..||+.-...++..+..| ...+++++|++.- .++++|+.||++.|+... + ++..+.++
T Consensus 628 d~k~~WfDldlsskPyk~lr~H------~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLH------EKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhh------hhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 9999999998776666555444 4789999999986 589999999999998632 1 22333332
Q ss_pred C--CCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909 440 P--KSGSQMSASFTTTGKHIISIGDDCRVYVW 469 (626)
Q Consensus 440 ~--~~~~v~~~~~sp~g~~l~s~s~dg~I~iw 469 (626)
. ....|..+.|+|...+|++++.||+|++|
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 1 22458889999999999999999999998
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.2e-20 Score=189.39 Aligned_cols=251 Identities=15% Similarity=0.159 Sum_probs=179.2
Q ss_pred ccccccccCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~L-atgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
.+.+.+|.. +.+++|+|+|+.+ ++++.++.|++||..+++.
T Consensus 24 ~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~------------------------------------- 65 (300)
T TIGR03866 24 TRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV------------------------------------- 65 (300)
T ss_pred EEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-------------------------------------
Confidence 344544543 6789999999976 5677899999999886322
Q ss_pred cccccCCCceeeccCccceEEEEEcCCC-eEE-EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~-s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
...+..+. .+..++|+|++ .++ +++.++.|++||+.+++.+..+.+...+.+++|+| ++.++++++.+
T Consensus 66 --------~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~ 135 (300)
T TIGR03866 66 --------IGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSET 135 (300)
T ss_pred --------EEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecC
Confidence 22233332 24578899987 454 45668999999999988888887666678999999 99999988876
Q ss_pred C-cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccc-cccCCCCeEEEEE
Q 006909 331 G-KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDR-KKTSGNKITGIQF 407 (626)
Q Consensus 331 g-~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~ 407 (626)
+ .+.+||..+++..........+.+++|+|+|+.+++++ .++.|++||+.+.+.... +..... ..........++|
T Consensus 136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 136 TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK-ITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee-eeecccccccccCCccceEE
Confidence 5 46778998877765444445667899999999886554 589999999987754322 222110 0001123457889
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCCC
Q 006909 408 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDEL 474 (626)
Q Consensus 408 s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~~ 474 (626)
+|++...+++...++.|.+||..+....... .+...+.+++|+|+|++|+++ +.++.|.+||+.++
T Consensus 215 s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 215 TKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 9998443455566778999998754332221 234578899999999999886 46899999999986
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1.4e-21 Score=196.85 Aligned_cols=236 Identities=26% Similarity=0.446 Sum_probs=195.1
Q ss_pred cccccccCcEEE-EEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 175 QEIQAHKGCIWT-LKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 175 ~~l~~H~~~V~~-l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
..+.+|.+-|.+ ++|-+ ++..|++|+.|++|.+|....
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~---------------------------------------- 90 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ---------------------------------------- 90 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCC----------------------------------------
Confidence 456789998888 88875 455799999999999999886
Q ss_pred cccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
..|+..+.||...|.+++...++.++|||.|.++++|-.. ++.... +|...|++++..| .+ .++||+.|.
T Consensus 91 -----~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDK 161 (745)
T KOG0301|consen 91 -----AEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP-EN-TYVTGSADK 161 (745)
T ss_pred -----CCchhhhhccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecC-CC-cEEeccCcc
Confidence 6789999999999999998888889999999999999874 444444 5999999999998 54 999999999
Q ss_pred cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 332 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 332 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
+|++|.- ...+..+.+|.+.|..+++-+++ .|++++.||.|++|++.+..+ .+ ++ +|...|.++...+++
T Consensus 162 tIklWk~-~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l-~~---~~----ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 162 TIKLWKG-GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVL-LE---MH----GHTNFVYSISMALSD 231 (745)
T ss_pred eeeeccC-CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCcee-ee---ee----ccceEEEEEEecCCC
Confidence 9999976 33445578899999999998876 588999999999999955433 22 22 345789999966654
Q ss_pred CcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 412 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 412 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
..++++++|++++||+...+.+.+.. ....++++.+-++|. |++|+.||.||||....
T Consensus 232 -~~Ivs~gEDrtlriW~~~e~~q~I~l--PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 232 -GLIVSTGEDRTLRIWKKDECVQVITL--PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -CeEEEecCCceEEEeecCceEEEEec--CccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 69999999999999998877777765 345889999888887 56677899999999873
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1e-21 Score=188.87 Aligned_cols=280 Identities=13% Similarity=0.176 Sum_probs=211.3
Q ss_pred ccceEEEEEcCCC-eEEEEeCCCcEEEeccCC--CeeeEeec-CCCCeEEEEEeeCCCC-EEEEEeCCCcEEEEeCCCCe
Q 006909 268 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--NQCLNVFD-HHNYVTCVQFNPIDDN-YFISGSIDGKVRIWGVCEKR 342 (626)
Q Consensus 268 ~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~--~~~~~~~~-~~~~v~~~~~~p~~~~-~l~s~s~dg~v~iwd~~~~~ 342 (626)
.+.|+++.|+|.. .|++|+.|++++||.+.. +..++.+. ...+|.+++|.| +|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence 4689999999987 899999999999998863 34444444 456999999999 777 89999999999999999887
Q ss_pred EEEeccC----CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909 343 VVDWADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 418 (626)
Q Consensus 343 ~~~~~~~----~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~ 418 (626)
+..+... ...+....++|++++|++.+..|.|.+....++..... +... +.|..++|+.++ +.|+++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s-~Kie-------G~v~~~~fsSds-k~l~~~ 362 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS-FKIE-------GVVSDFTFSSDS-KELLAS 362 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe-eeec-------cEEeeEEEecCC-cEEEEE
Confidence 7654332 23577788999999999999999999999888776433 3332 689999999997 788888
Q ss_pred eCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC-------CccCCcccee
Q 006909 419 SEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-------KQKNSVRSCE 489 (626)
Q Consensus 419 s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~-------~~~~~~~~~~ 489 (626)
+.+|.|.+||++.. ...+... ..-.-++++.+++|.|||+||+.|.|.|||.++...... ......++.+
T Consensus 363 ~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred cCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 99999999998854 3333332 122346778889999999999999999999876421111 1222345667
Q ss_pred eeccCCcEEEEecC--CCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCc
Q 006909 490 HFFSEGVSVAVQWP--GIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDV 567 (626)
Q Consensus 490 ~~~~~g~~~av~~s--~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~ 567 (626)
.|+|++.++|++-. ++...|..+.+... +..|.. .-..-.++++++|||.|-+++.+.. .+++.+|.+
T Consensus 442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TV---FsNfP~------~n~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~kL 511 (514)
T KOG2055|consen 442 QFNHDAQILAIASRVKKNALRLVHVPSCTV---FSNFPT------SNTKVGHVTCMAFSPNSGYLAVGNE-AGRVHLFKL 511 (514)
T ss_pred eeCcchhhhhhhhhccccceEEEeccceee---eccCCC------CCCcccceEEEEecCCCceEEeecC-CCceeeEee
Confidence 78888888887754 45556666666543 233333 3333456999999999999999998 699999976
Q ss_pred c
Q 006909 568 T 568 (626)
Q Consensus 568 ~ 568 (626)
.
T Consensus 512 ~ 512 (514)
T KOG2055|consen 512 H 512 (514)
T ss_pred c
Confidence 4
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.5e-21 Score=173.78 Aligned_cols=251 Identities=23% Similarity=0.351 Sum_probs=186.9
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
.+|.+-|+++.|.+.|+.+|||+.|++|+|||..+... .
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------------------------~ 48 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------------------------T 48 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------------------------c
Confidence 48999999999999999999999999999999754211 0
Q ss_pred CCCceeeccCccceEEEEEcCC--C-eEEEEeCCCcEEEeccC-----C-C-e--eeEee-cCCCCeEEEEEeeC-CCCE
Q 006909 258 ESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVG-----C-N-Q--CLNVF-DHHNYVTCVQFNPI-DDNY 323 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~-----~-~-~--~~~~~-~~~~~v~~~~~~p~-~~~~ 323 (626)
.........|.+.|..+.|.+. | .+++|+.|+++.||.=. . + + ...++ .....|+.+.|.|. -|-.
T Consensus 49 W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 49 WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE
Confidence 2234567789999999999753 4 89999999999999641 1 1 1 11222 46778999999983 3567
Q ss_pred EEEEeCCCcEEEEeCCCCe-EEE-------------eccCCCCeEEEEEeeC---CCEEEEEecC-----CcEEEEEcCC
Q 006909 324 FISGSIDGKVRIWGVCEKR-VVD-------------WADVRDVISAICYIPD---GKGFIVGSIT-----GTCHFYKASG 381 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~-~~~-------------~~~~~~~i~~i~~sp~---g~~l~~g~~d-----g~i~i~d~~~ 381 (626)
+++++.||.+|||+...-- +.. ...+..+..|+.|+|. ..+|++|+.+ +.++||....
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 9999999999999875421 111 1124566789999984 4678888876 5788888766
Q ss_pred CceeeeEEeeccccccCCCCeEEEEEcCCCC---cEEEEEeCCCcEEEEeCCc-------------------ceeee-ee
Q 006909 382 NDLKLEKVDFHDRKKTSGNKITGIQFSRDES---QRIMITSEDSKLRILDGVD-------------------VIHKF-KG 438 (626)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~---~~l~~~s~dg~i~iwd~~~-------------------~~~~~-~~ 438 (626)
+...... ......+..+|+.++|.|+-+ ..|++++.|| |+||.+.. .+..+ ..
T Consensus 209 ~~rKw~k---va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 209 NGRKWLK---VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL 284 (361)
T ss_pred Ccceeee---ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence 5533321 122335679999999999732 4789999999 99998652 11111 23
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 439 LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 439 ~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
..|.+.|..+.|.-.|..|++.|+||.|++|...-
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 45889999999999999999999999999998653
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.7e-21 Score=175.84 Aligned_cols=277 Identities=18% Similarity=0.226 Sum_probs=211.3
Q ss_pred CccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909 267 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 345 (626)
Q Consensus 267 h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~ 345 (626)
....|+.+.|+|.+ .|+.++.||++++||+........+.|..++.+++|. +...+++|+.||.|+.+|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeecc--CCceEEEeccCceEEEEEecCCccee
Confidence 35789999999865 8888889999999999999888889999999999998 47889999999999999999999999
Q ss_pred eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 006909 346 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 425 (626)
Q Consensus 346 ~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~ 425 (626)
+..|..+|.+|.+++....+++|+.|++|++||.+....... .. ....|.++.... ..|++|+.+..+.
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~---~d-----~~kkVy~~~v~g---~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT---FD-----QGKKVYCMDVSG---NRLVVGTSDRKVL 158 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc---cc-----cCceEEEEeccC---CEEEEeecCceEE
Confidence 999999999999999888999999999999999987332111 11 125788888765 4899999999999
Q ss_pred EEeCCcceeeeee--cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecC
Q 006909 426 ILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP 503 (626)
Q Consensus 426 iwd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s 503 (626)
+||+++....++. ..-.-.+.++++-|++.-.+.++-||.|.+=.++.. +.....+....|..-..
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s--~~~~skkyaFkCHr~~~---------- 226 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS--EEAQSKKYAFKCHRLSE---------- 226 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc--hHHhhhceeEEeeeccc----------
Confidence 9999876655533 223446789999998888899999999998777653 11111111111110000
Q ss_pred CCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHH
Q 006909 504 GIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRL 583 (626)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 583 (626)
++. ...-+|.+++|+|--..+++++. ||.|-+||+... +.
T Consensus 227 -~~~---------------------------~~~yPVNai~Fhp~~~tfaTgGs-DG~V~~Wd~~~r-----------Kr 266 (323)
T KOG1036|consen 227 -KDT---------------------------EIIYPVNAIAFHPIHGTFATGGS-DGIVNIWDLFNR-----------KR 266 (323)
T ss_pred -CCc---------------------------eEEEEeceeEeccccceEEecCC-CceEEEccCcch-----------hh
Confidence 110 01125788999998888999888 899999999887 44
Q ss_pred HhhhccCCcccc--ccccccceEEEEec
Q 006909 584 QQQCLNNVDDVR--AISATWGLVIVTAG 609 (626)
Q Consensus 584 ~~~~~~~~~~~~--~~s~~dg~~ivt~g 609 (626)
...+++....+. +++. ||..||.|+
T Consensus 267 l~q~~~~~~SI~slsfs~-dG~~LAia~ 293 (323)
T KOG1036|consen 267 LKQLAKYETSISSLSFSM-DGSLLAIAS 293 (323)
T ss_pred hhhccCCCCceEEEEecc-CCCeEEEEe
Confidence 444555544343 4455 899999887
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.1e-23 Score=207.76 Aligned_cols=237 Identities=24% Similarity=0.413 Sum_probs=205.4
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
.+.+.+|...|.|+..-..++.+++|+.|..+-+|.+..
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k----------------------------------------- 59 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK----------------------------------------- 59 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccC-----------------------------------------
Confidence 356678999999999988899999999999999998875
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
..++..+.+|..+|.++.|+++. +|++|+.+|+|++||++.++.++++ +|...+..+.|+| -+.++++|+.|+
T Consensus 60 ----p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdt 134 (825)
T KOG0267|consen 60 ----PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDT 134 (825)
T ss_pred ----CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccc
Confidence 23355688999999999999876 8889999999999999999888776 6999999999999 999999999999
Q ss_pred cEEEEeCCC-CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 332 KVRIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 332 ~v~iwd~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
.+++||.+. |....+.+|...+..+.|+|+|++++.|+.|.++++||+..++...+ ...|...+..+.|+|.
T Consensus 135 d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e-------f~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 135 DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE-------FKSHEGKVQSLEFHPL 207 (825)
T ss_pred cceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc-------cccccccccccccCch
Confidence 999999994 55556677888999999999999999999999999999987775322 3445688999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
. .+++.|+.|+++++||+.+....-.+......|.+..|+|+++.+++|....
T Consensus 208 e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 208 E-VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred h-hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 6 7889999999999999987766666666788999999999999999886543
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=4.7e-22 Score=192.61 Aligned_cols=238 Identities=22% Similarity=0.368 Sum_probs=201.7
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
-..-|.++.+.|||+.|++|+.-.++.|||+......
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr------------------------------------------- 500 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR------------------------------------------- 500 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcc-------------------------------------------
Confidence 3567899999999999999999999999999863211
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
....+..-.-...+++.+||. ..++|..||.|.|||+.+...++.|. |.+.+.||.+++ +|..|-+|+.|++||.||
T Consensus 501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehh
Confidence 112233334567788889987 77899999999999999999999995 999999999999 999999999999999999
Q ss_pred CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909 338 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 417 (626)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~ 417 (626)
+++++..........|.++.++|++.++++|-.++.+.+......+. .++.. |..-|.++.|.+.| +++++
T Consensus 580 lregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k--yqlhl------heScVLSlKFa~cG-kwfvS 650 (705)
T KOG0639|consen 580 LREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK--YQLHL------HESCVLSLKFAYCG-KWFVS 650 (705)
T ss_pred hhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc--eeecc------cccEEEEEEecccC-ceeee
Confidence 99999888888889999999999999999999999998887765432 22222 34789999999998 89999
Q ss_pred EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
.+.|+-+..|.+--....|... ....|.++.+|.|.+||+||+.|....||.+
T Consensus 651 tGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999977666666654 5678999999999999999999988888865
No 133
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=186.42 Aligned_cols=252 Identities=21% Similarity=0.314 Sum_probs=186.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceE
Q 006909 193 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL 272 (626)
Q Consensus 193 g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 272 (626)
|+|+|.|+.|..|.|||+.-.....-.+ .++...+. ......+.-..-.+|+..|.
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~---------------~LGs~~sk---------~~~k~~k~~~~~~gHTdavl 247 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCV---------------TLGSKASK---------KKKKKGKRSNSASGHTDAVL 247 (463)
T ss_pred cceEEEeccCceeEEeccccccccccce---------------eechhhhh---------hhhhhcccccccccchHHHH
Confidence 5799999999999999986432211110 11100000 00000111223457999999
Q ss_pred EEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEEecc
Q 006909 273 DLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWAD 348 (626)
Q Consensus 273 ~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~ 348 (626)
+++|+.. +.|+|||.|.+|++||+.++++..++. |...|.++.|+|..+.+|++|+.|++|.+.|.+. ...-....
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence 9999865 589999999999999999999999997 8889999999998899999999999999999985 22223344
Q ss_pred CCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 349 VRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 349 ~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
..+.|-.+.|.|.. ..+++++.||+++-+|++....+...+..| ...|.++++++.-+.++++++.|+.|++|
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH------d~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH------DDEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec------cCCcceEEecCCCCcceeeccccceEEEE
Confidence 56778899999954 577888999999999999887555555544 48999999999888899999999999999
Q ss_pred eCCc--ceeeeeecCCCCCeEEEEEcCCCC-EEEEEeCCccEEEEECCCC
Q 006909 428 DGVD--VIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 428 d~~~--~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s~dg~I~iwd~~~~ 474 (626)
+... ........-..+...++++.|+-. +++.|+..+.++|||+.+.
T Consensus 402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 9652 221111111223456677777654 4667777788999999875
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.6e-21 Score=186.59 Aligned_cols=246 Identities=17% Similarity=0.195 Sum_probs=190.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+| .
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG---------------------------------------------~ 114 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSG---------------------------------------------I 114 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccc---------------------------------------------c
Confidence 4678999999999999999989999999999984 4
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC---------CCeeeEeec-CCCCeEEEEEeeC-CCCEEEEE
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---------CNQCLNVFD-HHNYVTCVQFNPI-DDNYFISG 327 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~---------~~~~~~~~~-~~~~v~~~~~~p~-~~~~l~s~ 327 (626)
.+..+.+|-..|+|+.|+.|+ +|+|||.||.|.+|++- +-.++..|. |.-+|+.+...+. ...+++++
T Consensus 115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta 194 (476)
T KOG0646|consen 115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA 194 (476)
T ss_pred HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence 466778999999999999988 99999999999999762 234555664 8889999998762 34689999
Q ss_pred eCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee----------EEeecccccc
Q 006909 328 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE----------KVDFHDRKKT 397 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~----------~~~~~~~~~~ 397 (626)
|.|.++++||+..+.++........+++++.+|.++.+++|+.+|.|.+.++.+...... ..... ...+
T Consensus 195 S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~-~~~G 273 (476)
T KOG0646|consen 195 SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN-VLVG 273 (476)
T ss_pred cCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee-eecc
Confidence 999999999999999999889999999999999999999999999999988754331100 00001 1223
Q ss_pred CCC--CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECC
Q 006909 398 SGN--KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYD 472 (626)
Q Consensus 398 ~~~--~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~ 472 (626)
|.+ .|+|++.+-|| .+|++|+.||+|+|||+......-......++|+.+.+.|-.+-++.+ .....+-.|++.
T Consensus 274 h~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 274 HENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred ccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 444 99999999998 799999999999999976432222222256788888886654444433 223344444444
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=3.7e-21 Score=191.89 Aligned_cols=252 Identities=20% Similarity=0.350 Sum_probs=186.5
Q ss_pred EEEEcCC---CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909 186 TLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 262 (626)
Q Consensus 186 ~l~fspd---g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (626)
+..|++. ...||.+.+||.|.++|.... .+.+++..+.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~---------------------------------------~fr~ee~~lk 94 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSI---------------------------------------VFRLEERQLK 94 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhh---------------------------------------hcchhhhhhc
Confidence 3667653 348999999999999998762 2223445567
Q ss_pred eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe---ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909 263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~ 338 (626)
....|...|.++.|.|.. .|++++.|.++++||+.+..+... ++|...|.+++|.|.+...|++|+.||.|.|||+
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 778899999999999954 899999999999999999888765 4799999999999989999999999999999999
Q ss_pred CCCeEE----------------------------EeccCCCCeEE---EEEeeCCCEEEEEec-CCcEEEEEcCCCceee
Q 006909 339 CEKRVV----------------------------DWADVRDVISA---ICYIPDGKGFIVGSI-TGTCHFYKASGNDLKL 386 (626)
Q Consensus 339 ~~~~~~----------------------------~~~~~~~~i~~---i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~ 386 (626)
+-...- ....+...|.+ +.+..|...||+++. |+.|+|||++......
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 643200 01122233444 556678888998877 9999999999877654
Q ss_pred eEEeeccc-ccc---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc----ceeeeeecCCCCCeEEEEEcCCCCEEE
Q 006909 387 EKVDFHDR-KKT---SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHII 458 (626)
Q Consensus 387 ~~~~~~~~-~~~---~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~g~~l~ 458 (626)
..-..... ... ....++++.....| .+|++.+.|+.|+.|++.. +...+.+......-..-..+|++.+|+
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 42211110 111 13467788888887 5677777799999999763 333444432333333445689999999
Q ss_pred EEeCCccEEEEECCCCCCC
Q 006909 459 SIGDDCRVYVWNYDELCFP 477 (626)
Q Consensus 459 s~s~dg~I~iwd~~~~~~~ 477 (626)
+|+.|...++|.+.+...+
T Consensus 334 SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred ccCCCcceeeeeecCccCC
Confidence 9999999999999987444
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.9e-20 Score=186.11 Aligned_cols=380 Identities=16% Similarity=0.209 Sum_probs=255.0
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
+.....+....++|++|+.+|.+..++.|++||.+..++...+...
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~---------------------------------- 145 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT---------------------------------- 145 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE----------------------------------
Confidence 3344455667899999999999999999999997777777653221
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-----c----CCCCeEEEEEeeCC
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-----D----HHNYVTCVQFNPID 320 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-----~----~~~~v~~~~~~p~~ 320 (626)
....|...++.|.+++|+|++ .+++|+.||.|++||+.+++.+... + ...-|+++.|-.
T Consensus 146 ---------~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-- 214 (691)
T KOG2048|consen 146 ---------YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-- 214 (691)
T ss_pred ---------EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--
Confidence 123344457899999999999 5999999999999999999887732 1 223577888874
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909 321 DNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 399 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 399 (626)
...|++|...|+|.+||...+.+.. ...|...|.+++..++++++++++.|+.|..|...+.... +........|.
T Consensus 215 d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---wv~~~~r~~h~ 291 (691)
T KOG2048|consen 215 DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---WVINSRRDLHA 291 (691)
T ss_pred cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc---eeeeccccCCc
Confidence 6689999999999999999888765 5678899999999999999999999999999998877553 33334455667
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeE-EEEEcCCCCEEEEEeCCccEEEEECCCCCC--
Q 006909 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVWNYDELCF-- 476 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~-- 476 (626)
..|.+++..++ .+++|+.|..+.+-..+.............+-. .+...|..+ |+.--.+..+.+|.+.+...
T Consensus 292 hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~-L~~~w~~h~v~lwrlGS~~~~g 367 (691)
T KOG2048|consen 292 HDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENR-LLVLWKAHGVDLWRLGSVILQG 367 (691)
T ss_pred ccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccce-EEEEeccccccceeccCccccc
Confidence 89999999886 799999999998876543111110000000001 112233333 33333356677777765411
Q ss_pred --------CCCCccCCccceeeeccCCcEEEEec---------CC--------------------------CCccccccc
Q 006909 477 --------PSSKQKNSVRSCEHFFSEGVSVAVQW---------PG--------------------------IGTEQKSLC 513 (626)
Q Consensus 477 --------~~~~~~~~~~~~~~~~~~g~~~av~~---------s~--------------------------~~~~l~~~~ 513 (626)
.........++|.+.+|+|..+|+.. .| ++..++.++
T Consensus 368 ~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s 447 (691)
T KOG2048|consen 368 EYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS 447 (691)
T ss_pred ccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe
Confidence 12223445678889999999988875 11 111111111
Q ss_pred CCCccccCccccccC--CC------Cccc-CCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHH
Q 006909 514 SSSLRDCSQKWDNLE--TA------PWIR-DSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQ 584 (626)
Q Consensus 514 ~~~~~~~~~~w~~~~--~~------~~~~-~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 584 (626)
.+ ...|..++ .+ ...+ .....+..++.||||+++++++- .+.|.+|++.+.. ..
T Consensus 448 ~~-----~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t-~g~I~v~nl~~~~-----------~~ 510 (691)
T KOG2048|consen 448 KN-----IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST-RGQIFVYNLETLE-----------SH 510 (691)
T ss_pred cc-----cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec-cceEEEEEcccce-----------ee
Confidence 00 11111111 00 0111 12234778899999999999886 7999999999872 22
Q ss_pred hhh--ccCCccccccccccceEEEEecCCceEeeeee
Q 006909 585 QQC--LNNVDDVRAISATWGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 585 ~~~--~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~ 619 (626)
.+. .......+++++.+...||.+..|+.+.-|++
T Consensus 511 ~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 511 LLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred cchhccCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence 222 12223334566556667888888899999887
No 137
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3e-21 Score=196.65 Aligned_cols=202 Identities=19% Similarity=0.369 Sum_probs=162.7
Q ss_pred ceEEEEEcC--CCeEEEEeCCCcEEEeccCC---CeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909 270 DVLDLAWSN--SNYLLSCSMDKTVRMWQVGC---NQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343 (626)
Q Consensus 270 ~V~~l~~s~--~~~l~s~s~d~~v~iwd~~~---~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~ 343 (626)
.+.++.|+. +++|++++..|.|.+||+.. .+.+..| .|...++++.|++...++|++||.||+|++||++....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 456778874 35999999999999999986 4455556 49999999999999999999999999999999998664
Q ss_pred E-EeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909 344 V-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 344 ~-~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
. .+.+....|..+.|+| .+.+|+++...|.+++||++.......+ ...|.++|.++.|+|++ .+||+|+.|
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k------~~AH~GpV~c~nwhPnr-~~lATGGRD 241 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK------LTAHNGPVLCLNWHPNR-EWLATGGRD 241 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH------hhcccCceEEEeecCCC-ceeeecCCC
Confidence 4 4556778899999999 6789999999999999999977654333 34456999999999986 799999999
Q ss_pred CcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCE-EEEEe--CCccEEEEECCCCCCCC
Q 006909 422 SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKH-IISIG--DDCRVYVWNYDELCFPS 478 (626)
Q Consensus 422 g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~-l~s~s--~dg~I~iwd~~~~~~~~ 478 (626)
+.|+|||..... ..........+|..+.|-|..++ |++++ .|-.|+|||+.....|.
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~ 302 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY 302 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc
Confidence 999999976322 12222224678999999998765 55554 47899999999875554
No 138
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=177.36 Aligned_cols=263 Identities=19% Similarity=0.272 Sum_probs=197.0
Q ss_pred ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
+..+.+.+.+|.+.|+++.||.++++||+|+.|..+++|++...-.
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---------------------------------- 90 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---------------------------------- 90 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh----------------------------------
Confidence 4456677889999999999999999999999999999999875211
Q ss_pred CCccccccCCCceeec-cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCC---CeEEEEEeeCCCCEE
Q 006909 250 PDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYF 324 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l 324 (626)
....+|+.... .|.+.|.|++|...+ .+++|..+++|.+.|+++.+.+..+.|.. .|..+..+| ..+.|
T Consensus 91 -----~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~ 164 (609)
T KOG4227|consen 91 -----RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTL 164 (609)
T ss_pred -----hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceE
Confidence 00134454443 456899999998766 89999999999999999999999998766 899999999 68999
Q ss_pred EEEeCCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909 325 ISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 399 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 399 (626)
++.+.++.|.+||.+..+ ++..........++.|+|. ..+|++.+..+.+-+||.+.....+.+...........
T Consensus 165 ~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~ 244 (609)
T KOG4227|consen 165 IVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQEN 244 (609)
T ss_pred EEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccc
Confidence 999999999999998644 4445566677889999995 46778888899999999987765544222211111112
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-ceeeeeec------CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGL------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~------~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
....++.|+|.| ..+++--....-.+||.-. ....++.. -+...+.+++|..|- .+++|+++-.|++|.+.
T Consensus 245 ~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 245 TEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLP 322 (609)
T ss_pred hhhhheeeCCCC-CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecC
Confidence 334678899998 5566666666666777543 23333332 123456778886544 49999999999999997
Q ss_pred CC
Q 006909 473 EL 474 (626)
Q Consensus 473 ~~ 474 (626)
..
T Consensus 323 ~~ 324 (609)
T KOG4227|consen 323 RA 324 (609)
T ss_pred CC
Confidence 53
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=2e-19 Score=180.52 Aligned_cols=226 Identities=14% Similarity=0.163 Sum_probs=163.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeeccCccceE
Q 006909 193 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL 272 (626)
Q Consensus 193 g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 272 (626)
+..+++++.|+.|++||+.++ +.+..+.+|. .+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~---------------------------------------------~~~~~~~~~~-~~~ 34 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL---------------------------------------------EVTRTFPVGQ-RPR 34 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC---------------------------------------------ceEEEEECCC-CCC
Confidence 357889999999999999763 2344555443 367
Q ss_pred EEEEcCCC-eE-EEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEE-EeCCCcEEEEeCCCCeEEEeccC
Q 006909 273 DLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGKVRIWGVCEKRVVDWADV 349 (626)
Q Consensus 273 ~l~~s~~~-~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~s~dg~v~iwd~~~~~~~~~~~~ 349 (626)
+++|+|++ .+ ++++.++.|++||..+++.+..+.....+..++|+| +++.+++ ++.++.|++||+.+.+.+.....
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence 89999987 44 567788999999999998877775444567889999 8876655 45689999999998877665555
Q ss_pred CCCeEEEEEeeCCCEEEEEecCC-cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE-EEEeCCCcEEEE
Q 006909 350 RDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI-MITSEDSKLRIL 427 (626)
Q Consensus 350 ~~~i~~i~~sp~g~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l-~~~s~dg~i~iw 427 (626)
...+.+++|+|+|+.++++..++ .+.+||..+...... .. . ...+..++|+|++ +++ +++..++.|++|
T Consensus 114 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~-~~-~------~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~ 184 (300)
T TIGR03866 114 GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN-VL-V------DQRPRFAEFTADG-KELWVSSEIGGTVSVI 184 (300)
T ss_pred CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE-EE-c------CCCccEEEECCCC-CEEEEEcCCCCEEEEE
Confidence 55678899999999999988775 467789876544221 11 1 1345789999998 455 455569999999
Q ss_pred eCCcce--eeeeecC-----CCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCCC
Q 006909 428 DGVDVI--HKFKGLP-----KSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDEL 474 (626)
Q Consensus 428 d~~~~~--~~~~~~~-----~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~~ 474 (626)
|+.+.. ..+.... .......++|+|++++++.+ +.++.|.+||+.++
T Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 987543 2222111 11234568899999986554 45678999999865
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=2.8e-20 Score=169.18 Aligned_cols=283 Identities=14% Similarity=0.182 Sum_probs=203.7
Q ss_pred eccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCe------------eeEee----cCCCCeEEEEEeeCCCCEEE
Q 006909 264 LHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ------------CLNVF----DHHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~------------~~~~~----~~~~~v~~~~~~p~~~~~l~ 325 (626)
...|.+.|+.+...+. | ++++|+.||.|.+||++... |+... .|.-.|..+.|-|.+..+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 3468899999999874 4 89999999999999996542 11111 26678999999999999999
Q ss_pred EEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeC---CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909 326 SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~---g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 402 (626)
+++.|.++++||..+-+....+...+.|.+-+++|- .-++++|..+-.|++.|+..+...-. ..+|...|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~-------LsGHr~~v 191 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT-------LSGHRDGV 191 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee-------eccccCce
Confidence 999999999999999998888888899999999883 45788899999999999998875321 34456899
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCcce---eee------------eecCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909 403 TGIQFSRDESQRIMITSEDSKLRILDGVDVI---HKF------------KGLPKSGSQMSASFTTTGKHIISIGDDCRVY 467 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~---~~~------------~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~ 467 (626)
.++.|+|.....|++|+.||.|++||++... ..+ ....|.+.+.+++|+.++.++++++.|..++
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 9999999987789999999999999976431 111 1234778899999999999999999999999
Q ss_pred EEECCCCCCCCCCccC---Cccceeeec----cCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCccc
Q 006909 468 VWNYDELCFPSSKQKN---SVRSCEHFF----SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFS 540 (626)
Q Consensus 468 iwd~~~~~~~~~~~~~---~~~~~~~~~----~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 540 (626)
+|+..++......... ......+++ ..+..+.+... ++..+..+..++. ++. ...+...+
T Consensus 272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~-~~lall~~~sgs~---ir~---------l~~h~k~i 338 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND-GSLALLNLLEGSF---VRR---------LSTHLKRI 338 (397)
T ss_pred EeecccCcccccccccccccccccceEEEeecccceEEEEecC-CeEEEEEccCceE---EEe---------eeccccee
Confidence 9999987332221111 000111111 12223222222 3333444333322 222 22344456
Q ss_pred CCccccCCCCcccccCCCCCCCCCCCc
Q 006909 541 LGSWFSNDGPCRGSATWPAEKLPLWDV 567 (626)
Q Consensus 541 ~~~~~s~dg~~l~s~~~~d~~i~vwd~ 567 (626)
...+|-|+-+...++.. ++.|..|-.
T Consensus 339 ~c~~~~~~fq~~~tg~~-d~ni~~w~p 364 (397)
T KOG4283|consen 339 NCAAYRPDFEQCFTGDM-NGNIYMWSP 364 (397)
T ss_pred eEEeecCchhhhhcccc-CCccccccc
Confidence 66677777777777777 788999965
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=2.3e-20 Score=179.52 Aligned_cols=289 Identities=15% Similarity=0.194 Sum_probs=212.1
Q ss_pred cccccccccccccCcEEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909 169 TALYTSQEIQAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 246 (626)
Q Consensus 169 ~~~~~~~~l~~H~~~V~~l~fspdg~--~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (626)
......++++-|.+.|++++|+|... ++|+|..-|.|-+||+.+...
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~------------------------------- 222 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK------------------------------- 222 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------------------------
Confidence 44555667788999999999999654 889999999999999953111
Q ss_pred eecCCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCC
Q 006909 247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDD 321 (626)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~ 321 (626)
....+..+..|..+|.+|.|+|.+ .+++.|.||+|++-|++++..-..+. .......+.|+. +.
T Consensus 223 ----------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~ 291 (498)
T KOG4328|consen 223 ----------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ES 291 (498)
T ss_pred ----------ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CC
Confidence 123356677899999999999975 89999999999999998775544443 334677888887 66
Q ss_pred CEEEEEeCCCcEEEEeCCCCe--EEEeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeee-EEeecccccc
Q 006909 322 NYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKT 397 (626)
Q Consensus 322 ~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~ 397 (626)
..++.+..=|...+||++++. ...+.-|...|.+++++|- ..+|++++.|++.+|||++.-..... .+. ...
T Consensus 292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls----t~~ 367 (498)
T KOG4328|consen 292 RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS----TLP 367 (498)
T ss_pred ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee----ccc
Confidence 666667666799999998754 3456677789999999995 56789999999999999986544332 111 223
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC----c--ceeeeeecCCC----CCeEEEEEcCCCCEEEEEeCCccEE
Q 006909 398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV----D--VIHKFKGLPKS----GSQMSASFTTTGKHIISIGDDCRVY 467 (626)
Q Consensus 398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~----~--~~~~~~~~~~~----~~v~~~~~sp~g~~l~s~s~dg~I~ 467 (626)
|...|.+..|||.+.. |++.+.|..|+|||.. . +...+. |.+. -......|.|+..+|++|-.-..|-
T Consensus 368 HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ID 445 (498)
T KOG4328|consen 368 HRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPID 445 (498)
T ss_pred ccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCccee
Confidence 4578999999999865 9999999999999973 1 111121 1111 1345678999999999999999999
Q ss_pred EEECCCCCCCCCC---ccCCccceeeeccCCcEEEEecCCC
Q 006909 468 VWNYDELCFPSSK---QKNSVRSCEHFFSEGVSVAVQWPGI 505 (626)
Q Consensus 468 iwd~~~~~~~~~~---~~~~~~~~~~~~~~g~~~av~~s~~ 505 (626)
|+|-..+...... ....+.+..++||-+..++.+-+..
T Consensus 446 v~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 446 VFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred EEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence 9999887532221 1224455567788766555544333
No 142
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=1.3e-20 Score=187.29 Aligned_cols=131 Identities=16% Similarity=0.267 Sum_probs=107.9
Q ss_pred eEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909 353 ISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 353 i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
|+.+.|.| |...|++++.||.|++|.+..+...-...........|...|+++.|+|-....|++++.|.+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 45566777 56789999999999999998776654444444445667799999999997777999999999999999997
Q ss_pred ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909 432 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 483 (626)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 483 (626)
........+|.+.|.+++|||+|+.+++.+.||+|++|+-.....+......
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g 761 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG 761 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC
Confidence 7766666779999999999999999999999999999999887655554444
No 143
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=6.4e-21 Score=169.10 Aligned_cols=210 Identities=20% Similarity=0.302 Sum_probs=169.6
Q ss_pred cccccccccccCcEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 171 LYTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
.++..+|.||.++|+.++|.. .|.+||+++.||.|.||.-++++
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~---------------------------------- 91 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR---------------------------------- 91 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc----------------------------------
Confidence 356778999999999999975 79999999999999999988752
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcCCC---eEEEEeCCCcEEEeccCCC--eeeEe--ecCCCCeEEEEEeeCC-
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCN--QCLNV--FDHHNYVTCVQFNPID- 320 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~--~~~~~--~~~~~~v~~~~~~p~~- 320 (626)
.........|...|++++|.|.+ .|++++.||.|.|.+.+.. -.... +.|.-.|++++|.|..
T Consensus 92 ---------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 92 ---------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred ---------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 24466778899999999999874 7889999999999988654 22222 2488899999999831
Q ss_pred -C-----------CEEEEEeCCCcEEEEeCCCCe---EEEeccCCCCeEEEEEeeCC----CEEEEEecCCcEEEEEcCC
Q 006909 321 -D-----------NYFISGSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPDG----KGFIVGSITGTCHFYKASG 381 (626)
Q Consensus 321 -~-----------~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g----~~l~~g~~dg~i~i~d~~~ 381 (626)
+ ..|++|+.|..|+||+...++ -..+.+|.+.|..++|.|.- .+|++++.||++.||....
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 2 569999999999999998753 22378899999999999964 5799999999999999874
Q ss_pred CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909 382 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 428 (626)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd 428 (626)
...+.+...++. ....+..+.||..| +.|++++.|+.|.+|.
T Consensus 243 e~e~wk~tll~~----f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 243 EYEPWKKTLLEE----FPDVVWRVSWSLSG-NILAVSGGDNKVTLWK 284 (299)
T ss_pred ccCccccccccc----CCcceEEEEEeccc-cEEEEecCCcEEEEEE
Confidence 433333222221 34789999999998 7999999999999997
No 144
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.5e-19 Score=174.66 Aligned_cols=199 Identities=24% Similarity=0.359 Sum_probs=165.6
Q ss_pred CccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC----
Q 006909 267 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE---- 340 (626)
Q Consensus 267 h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~---- 340 (626)
-.++|.+++-+|+| +|+.|+..+.|++|.+.+|..+..+. |-..|+|+.|+- |+.+|++|+.||.|.+|.+..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeeccc
Confidence 46789999999999 45555599999999999999998884 889999999999 999999999999999997632
Q ss_pred ------CeEEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 341 ------KRVVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 341 ------~~~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
.....+..|.-+|+.+...+. ..++++++.|.++++||+..+.+... +.+. ..+.+++..|.+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt-i~fp-------~si~av~lDpae- 229 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT-ITFP-------SSIKAVALDPAE- 229 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE-EecC-------CcceeEEEcccc-
Confidence 234567889999999988775 35899999999999999999876543 2222 689999999997
Q ss_pred cEEEEEeCCCcEEEEeCCc------------------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 413 QRIMITSEDSKLRILDGVD------------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 413 ~~l~~~s~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
..+++|+.+|.|.+.++.. ....+.++.....|++++++-||..|++|+.||.|.|||+.+.
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 7999999999999987431 1233344434459999999999999999999999999999886
Q ss_pred C
Q 006909 475 C 475 (626)
Q Consensus 475 ~ 475 (626)
.
T Consensus 310 Q 310 (476)
T KOG0646|consen 310 Q 310 (476)
T ss_pred H
Confidence 3
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=3.6e-20 Score=178.23 Aligned_cols=290 Identities=14% Similarity=0.149 Sum_probs=207.1
Q ss_pred CceeeccCccceEEEEEcCCC---eEEEEeCCCcEEEeccCCCee----eEee-cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 260 PLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQC----LNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~~----~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
......-|.+.|++++|+|.. .+++|+.-|+|-+||+.+.+. +..+ .|..+|.++.|+|.+...+++.|.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 345556789999999999853 788999999999999953322 2333 48999999999998899999999999
Q ss_pred cEEEEeCCCCeEEE---eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 332 KVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 332 ~v~iwd~~~~~~~~---~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
+|++-|+.+..... .......+..+.|+.+...++.+..=|...+||++.....+..+.++. ..|++++++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~------kKI~sv~~N 331 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK------KKITSVALN 331 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh------cccceeecC
Confidence 99999998765333 333456678888988888888888888999999999887766665554 589999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCccee----eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC---CCCCCCC--
Q 006909 409 RDESQRIMITSEDSKLRILDGVDVIH----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD---ELCFPSS-- 479 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~---~~~~~~~-- 479 (626)
|..+.+|++++.|++.+|||+++... .+....|...|.++.|||.+-.|++.+.|..|+|||.. ....+..
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 99889999999999999999874332 34556789999999999998889999999999999984 1111111
Q ss_pred CccCCc-----cceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCccc-CCccccCCCCccc
Q 006909 480 KQKNSV-----RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFS-LGSWFSNDGPCRG 553 (626)
Q Consensus 480 ~~~~~~-----~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~ 553 (626)
.|.... .--..|.|+..+++++-.+....++....+.....+ ..+....| .-..|+|-+..++
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el-----------~~P~~~tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL-----------HDPESSTIPSVNEFHPMRDTLA 480 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec-----------cCccccccccceeeccccccee
Confidence 111100 111245666666666655555444433332211100 11111112 2236888887666
Q ss_pred ccCCCCCCCCCCC
Q 006909 554 SATWPAEKLPLWD 566 (626)
Q Consensus 554 s~~~~d~~i~vwd 566 (626)
+++..-|+|.+|-
T Consensus 481 aG~~s~Gki~vft 493 (498)
T KOG4328|consen 481 AGGNSSGKIYVFT 493 (498)
T ss_pred ccCCccceEEEEe
Confidence 6665568888873
No 146
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.5e-19 Score=164.78 Aligned_cols=202 Identities=24% Similarity=0.354 Sum_probs=164.9
Q ss_pred ccccccccCcEEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 174 SQEIQAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~--~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
...|..|.+.|+++.|.++-. .|++|+.||.|.+|++..
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--------------------------------------- 116 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--------------------------------------- 116 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------------------------------------
Confidence 445668999999999999876 999999999999999986
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
...+..+.+|.+.|+.++.+|.+ +-++.+.|+.++.||+-.|+.-.........+.+.|+| .|.+|+.++.+
T Consensus 117 ------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 117 ------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN 189 (362)
T ss_pred ------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc
Confidence 45688999999999999999999 55688999999999999888777776666666799999 99988888764
Q ss_pred CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE--c
Q 006909 331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF--S 408 (626)
Q Consensus 331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--s 408 (626)
.|-+|.+....+.........+.++.|. ++..+++|..++.|.+||........ . ..+|..+|.++.+ .
T Consensus 190 -~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~-~------~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLT-E------FLAHENRVKDIASYTN 260 (362)
T ss_pred -EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccce-e------eecchhheeeeEEEec
Confidence 5899999887766655555667777664 56689999999999999998743322 2 3345588999884 3
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCc
Q 006909 409 RDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
|++ .+|++++.||.|+|||+..
T Consensus 261 ~~~-~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 261 PEH-EYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred CCc-eEEEEeccCceEEEEEccc
Confidence 444 7999999999999999763
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.9e-19 Score=179.85 Aligned_cols=250 Identities=19% Similarity=0.261 Sum_probs=181.0
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
...+|.++|..++|-|....|++++.|.+++.||+......
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~--------------------------------------- 135 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV--------------------------------------- 135 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee---------------------------------------
Confidence 34589999999999995569999999999999999874321
Q ss_pred ccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCee--------------------eEe--------e
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC--------------------LNV--------F 305 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~--------------------~~~--------~ 305 (626)
-...+.||...|.+++|++.+ .|++|+.||.|.|||++.... ... .
T Consensus 136 ----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 136 ----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 122477999999999999876 899999999999999864320 000 0
Q ss_pred cCCCC----eEEEEEeeCCCCEEEEEeC-CCcEEEEeCCCCeEEE---------eccC---CCCeEEEEEeeCCCEEEEE
Q 006909 306 DHHNY----VTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVD---------WADV---RDVISAICYIPDGKGFIVG 368 (626)
Q Consensus 306 ~~~~~----v~~~~~~p~~~~~l~s~s~-dg~v~iwd~~~~~~~~---------~~~~---~~~i~~i~~sp~g~~l~~g 368 (626)
.+... |+.+.| . |...||+++. |+.|+|||++...... +..+ ...+.++.....|.+|.+.
T Consensus 212 A~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 12333 444555 4 8899999988 9999999998754321 1122 3457788888889999999
Q ss_pred ecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeee-eecCCCCCeEE
Q 006909 369 SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMS 447 (626)
Q Consensus 369 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~ 447 (626)
+.|+.|++|++.+......... .+ .... ..-..-..+|++ .++++|+.|...++|.+..+.... ...+|...|++
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~-sg-~~~~-sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~ 365 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEF-SG-KLNS-SFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTT 365 (720)
T ss_pred ecCCcEEEEeccccCcCchhhc-cC-cccc-eeeeeeecCCCC-ceEeccCCCcceeeeeecCccCChhhhhCcceEEEE
Confidence 9999999999987654322111 11 0001 111223468887 799999999999999987544322 22448889999
Q ss_pred EEEcCCC-CEEEEEeCCccEEEEECCCC
Q 006909 448 ASFTTTG-KHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 448 ~~~sp~g-~~l~s~s~dg~I~iwd~~~~ 474 (626)
++|.|.. .-++++++|..++||++.++
T Consensus 366 V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 366 VRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EeeccccCCCceeeccCcceEEEeccCc
Confidence 9997743 34677799999999999776
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=1.8e-19 Score=166.51 Aligned_cols=290 Identities=18% Similarity=0.272 Sum_probs=206.0
Q ss_pred cccccccCcEEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 175 QEIQAHKGCIWTLKFSP-----DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fsp-----dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
+....|+.+|..++|.+ +-+.+||+|.+ .+.||........
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i--------------------------------- 77 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI--------------------------------- 77 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce---------------------------------
Confidence 34568999999999985 33478887764 5889887642100
Q ss_pred CCccccccCCCceeec--cCccceEEEEEcC---C-C-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCC
Q 006909 250 PDEVFQIEESPLQELH--GHKGDVLDLAWSN---S-N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDD 321 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~--~h~~~V~~l~~s~---~-~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~ 321 (626)
..++... .|......++|+- + + ++++++.-|.|+|.|+.++++...+ +|...|+.+.++|...
T Consensus 78 ---------r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~ 148 (385)
T KOG1034|consen 78 ---------RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP 148 (385)
T ss_pred ---------eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCC
Confidence 0111111 4677778888862 2 2 8999999999999999999998877 5999999999999888
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEE----eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee---E------
Q 006909 322 NYFISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE---K------ 388 (626)
Q Consensus 322 ~~l~s~s~dg~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~---~------ 388 (626)
++++++|.|.+|++|++++..++. ..+|++.|.++.|+++|.++++++.|.++++|++...+.... .
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~ 228 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPN 228 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCC
Confidence 999999999999999999999886 457899999999999999999999999999999984332111 0
Q ss_pred ----------Eeecc--ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc----------------eeeeeecC
Q 006909 389 ----------VDFHD--RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV----------------IHKFKGLP 440 (626)
Q Consensus 389 ----------~~~~~--~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~ 440 (626)
..+.. ....|...|.|+.|-- .++++-+.++.|..|...+. ...+....
T Consensus 229 ~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~ 305 (385)
T KOG1034|consen 229 KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM 305 (385)
T ss_pred CccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence 11111 1233455666666664 48999999999999975311 11122211
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCC
Q 006909 441 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS 516 (626)
Q Consensus 441 ~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~ 516 (626)
...+....+|.|-++.||.|...|.|++||++....+... +..+--....+...+++.||..|...+.+.
T Consensus 306 c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t------tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 306 CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT------TLTHSKSGSTVRQTSFSRDGSILVLVCDDG 375 (385)
T ss_pred cceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc------eEEeccccceeeeeeecccCcEEEEEeCCC
Confidence 2223445667788999999999999999999986332111 000001123455677788888777766654
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=7e-21 Score=192.44 Aligned_cols=226 Identities=18% Similarity=0.281 Sum_probs=181.5
Q ss_pred eccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909 264 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 341 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~ 341 (626)
+..|...|.++..-..+ .+++|+.|..+.+|.+....++..+ .|..+|.++.|++ ...+|+.|+.+|+|++||+...
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhh
Confidence 44688888888875444 7889999999999999877777665 6999999999999 9999999999999999999887
Q ss_pred eEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909 342 RVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 420 (626)
Q Consensus 342 ~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~ 420 (626)
+.+ .+.+|...+.++.|+|-+.+++.|+.|+.+.+||.+...+... ..+|...+..+.|+|+| .+++.++.
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~-------~~s~~~vv~~l~lsP~G-r~v~~g~e 174 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT-------YKSHTRVVDVLRLSPDG-RWVASGGE 174 (825)
T ss_pred hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee-------ecCCcceeEEEeecCCC-ceeeccCC
Confidence 654 5789999999999999999999999999999999986555332 22355789999999998 89999999
Q ss_pred CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc-cCCccceeeeccCCcEE
Q 006909 421 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSV 498 (626)
Q Consensus 421 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ 498 (626)
|.+++|||.......-....|.+.+..+.|+|..-++++||.|++|++||+++........ ....+.+..|.|++..+
T Consensus 175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIV 253 (825)
T ss_pred cceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceee
Confidence 9999999986544333333488999999999999999999999999999999753322221 12233445666665543
No 150
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.6e-19 Score=162.87 Aligned_cols=293 Identities=12% Similarity=0.151 Sum_probs=197.5
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc
Q 006909 271 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 348 (626)
Q Consensus 271 V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 348 (626)
..|+.|++.| +|++|+.||.|.|||+.+...-+.+. |..+|++++|++ +|+.|+++|.|..|.+||+..+.+.....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 7899999988 99999999999999999988877775 999999999999 99999999999999999999999999899
Q ss_pred CCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 349 VRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 349 ~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
...+|..+.|+|... ..++.-.+..-.+.++.......- .... .........+..|.+.| +++++|...|.+.++
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L--p~d~-d~dln~sas~~~fdr~g-~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL--PKDD-DGDLNSSASHGVFDRRG-KYIITGTSKGKLLVY 180 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeec--cCCC-ccccccccccccccCCC-CEEEEecCcceEEEE
Confidence 999999999999544 333343444455666554322111 1110 00011122334688887 799999999999999
Q ss_pred eCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCC
Q 006909 428 DGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI 505 (626)
Q Consensus 428 d~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~ 505 (626)
|..+ ++..++.. ....|..+-|+..|++|+..+.|+.|+.|++.......+. |.. -|.
T Consensus 181 ~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~--------------~e~-----e~~ 240 (405)
T KOG1273|consen 181 DAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD--------------GEV-----EPE 240 (405)
T ss_pred ecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc--------------CCc-----Chh
Confidence 9764 44444442 2367888999999999999999999999998853111100 000 000
Q ss_pred CcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHh
Q 006909 506 GTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQ 585 (626)
Q Consensus 506 ~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 585 (626)
..+. +..... .=..+.||.||.|++.++..-+.|.||....| .+..
T Consensus 241 -~K~q--------------DvVNk~--------~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-----------sLVK 286 (405)
T KOG1273|consen 241 -HKLQ--------------DVVNKL--------QWKKCCFSGDGEYVCAGSARAHALYIWEKSIG-----------SLVK 286 (405)
T ss_pred -HHHH--------------HHHhhh--------hhhheeecCCccEEEeccccceeEEEEecCCc-----------ceee
Confidence 0000 000000 01234577777777766654577888888777 3333
Q ss_pred hhccCCccc---cccccccceEEEEecCCceEeeeeecCccc
Q 006909 586 QCLNNVDDV---RAISATWGLVIVTAGCDGMIKTFHNYGLPI 624 (626)
Q Consensus 586 ~~~~~~~~~---~~~s~~dg~~ivt~g~Dg~Irvw~~~g~p~ 624 (626)
..+...|.. .++.+ -...|++- ..|+|++|..-..|=
T Consensus 287 ILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 287 ILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred eecCCchhheeeccccc-ceeeeeec-cCCceEEEEeecccc
Confidence 333333221 12223 23345555 679999999877663
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2e-19 Score=172.72 Aligned_cols=205 Identities=21% Similarity=0.276 Sum_probs=169.1
Q ss_pred ccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 178 QAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
.+|+++|.+|+|+..-+ .||+||.|.+|++||+.+
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~-------------------------------------------- 275 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT-------------------------------------------- 275 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCC--------------------------------------------
Confidence 48999999999987654 899999999999999998
Q ss_pred cCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCC-CeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 333 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v 333 (626)
++|..++..|...|.++.|+|.. .|++|+.|++|.+.|.+. ...-..+...+.|-.++|.|...+.++++..||+|
T Consensus 276 -g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v 354 (463)
T KOG0270|consen 276 -GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTV 354 (463)
T ss_pred -CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceE
Confidence 45677788899999999999875 899999999999999984 33334556788999999999889999999999999
Q ss_pred EEEeCCCC--eEEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 334 RIWGVCEK--RVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 334 ~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
+-+|+|.. .+.....|.+.|.++++++.- ..+++++.++.+++|++.............. -+...|+++.|+
T Consensus 355 ~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~-----~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 355 YYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK-----LGRLHCFALDPD 429 (463)
T ss_pred EeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc-----ccceeecccCCC
Confidence 99999874 455688999999999999854 4688899999999999986654322111111 145778888998
Q ss_pred CCcEEEEEeCCCcEEEEeCCcc
Q 006909 411 ESQRIMITSEDSKLRILDGVDV 432 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~ 432 (626)
-..+++.|+..+.++|||+.+.
T Consensus 430 ~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 430 VAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cceEEEecCccceEEEeecccC
Confidence 7778999999999999997643
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.1e-18 Score=165.05 Aligned_cols=234 Identities=22% Similarity=0.349 Sum_probs=182.1
Q ss_pred cccccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 177 IQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 177 l~~H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
..||+++|..++|+|- ...||+||+|.+|.||++-..... .
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------------------------------~ 118 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------------------------------R 118 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--------------------------------------c
Confidence 4699999999999994 458999999999999998763221 0
Q ss_pred ccCCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 333 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v 333 (626)
--..|+..|.||...|--++|+|. +.|++++.|.+|.+||+.+|..+.++.|.+.|.++.|+. +|.+|++++.|..|
T Consensus 119 ~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkv 197 (472)
T KOG0303|consen 119 DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKV 197 (472)
T ss_pred CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeeccccee
Confidence 114678999999999999999996 589999999999999999999999999999999999999 99999999999999
Q ss_pred EEEeCCCCeEEEec-cCCC-CeEEEEEeeCCCEEEEEe---cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 334 RIWGVCEKRVVDWA-DVRD-VISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 334 ~iwd~~~~~~~~~~-~~~~-~i~~i~~sp~g~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
||||.++++++... .|.+ ....+.|-.+|..+-+|. .+..+-+||..+-..+.....+.. .+.|.---|.
T Consensus 198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-----SnGvl~PFyD 272 (472)
T KOG0303|consen 198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-----SNGVLLPFYD 272 (472)
T ss_pred EEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-----CCceEEeeec
Confidence 99999999988754 4433 345566778888555553 367899999887665544333333 2566666678
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCcc---eeeeeecCCCCCeEEEEEcCCC
Q 006909 409 RDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTG 454 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~g 454 (626)
+|.+-..++|-.|+.|+.|.+.+. ++-+.......+...+.|-|..
T Consensus 273 ~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 273 PDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred CCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 887556667888999999997632 3333333345667777777654
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6.3e-20 Score=195.33 Aligned_cols=248 Identities=16% Similarity=0.237 Sum_probs=197.6
Q ss_pred CcEEEEEEcCCCCE----EEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 182 GCIWTLKFSPDGRY----LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 182 ~~V~~l~fspdg~~----Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
..-+.++|.+.|.. ||.|.+||.|.+||...... ..+
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------------------------~~~ 105 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------------------------NAS 105 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------------------------Ccc
Confidence 34677889887765 99999999999999875100 011
Q ss_pred CCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCc
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGK 332 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~ 332 (626)
...+.++..|++.|..+.|++.. .|++|+.||.|.|||+.+-+.-... ...+.|.+++|+....++|++++.+|.
T Consensus 106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence 34467778899999999999853 8999999999999999875444443 256789999999867788999999999
Q ss_pred EEEEeCCCCeEE-EeccCC--CCeEEEEEeeCC-CEEEEEecCC---cEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909 333 VRIWGVCEKRVV-DWADVR--DVISAICYIPDG-KGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 333 v~iwd~~~~~~~-~~~~~~--~~i~~i~~sp~g-~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
+.|||++.++.+ .+..+. ..+..+.|+|++ ..+++++.|. .|.+||++....+...... |...|.++
T Consensus 186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~------H~~Gilsl 259 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG------HQRGILSL 259 (1049)
T ss_pred ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc------cccceeee
Confidence 999999987543 443333 357899999976 4566666653 7999999877766554433 45799999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-EEEEEeCCccEEEEECCCC
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s~dg~I~iwd~~~~ 474 (626)
.|++.+..++++++.|+.|.+|+..+............++..+.|+|... .+++++-||.|-|+.+.+.
T Consensus 260 sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 260 SWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 99999888999999999999999988766666666778999999999876 7788889999999999876
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=2.5e-19 Score=168.43 Aligned_cols=207 Identities=20% Similarity=0.361 Sum_probs=161.9
Q ss_pred cccccccccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCcee
Q 006909 169 TALYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 247 (626)
Q Consensus 169 ~~~~~~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (626)
.......++.+|.+.=+.++|||--. .|+||.--+.|++|...++.-
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W-------------------------------- 246 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW-------------------------------- 246 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCce--------------------------------
Confidence 44556667889999999999999322 588887778899999887432
Q ss_pred ecCCccccccCCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCC---eeeEeecCCCCeEEEEEeeCCCC
Q 006909 248 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDN 322 (626)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~v~~~~~~p~~~~ 322 (626)
... ...+.+|+..|-.|+|||. +.|++||.||+|+|||++.+ .++.+-.|...|+.|.|+. ...
T Consensus 247 -------~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~ 315 (440)
T KOG0302|consen 247 -------KVD---QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REP 315 (440)
T ss_pred -------eec---CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-Ccc
Confidence 222 2345679999999999985 59999999999999999988 5555556999999999998 666
Q ss_pred EEEEEeCCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCce-------------
Q 006909 323 YFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDL------------- 384 (626)
Q Consensus 323 ~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~------------- 384 (626)
+|++|+.||+++|||++.-+ +..+..|+.+|++|.|+|. ...|++++.|.+|.+||+....-
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~ 395 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQ 395 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchh
Confidence 99999999999999998633 3467889999999999994 56788899999999999864322
Q ss_pred --eeeEEeec-cccccCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909 385 --KLEKVDFH-DRKKTSGNKITGIQFSRDESQRIMITSEDSK 423 (626)
Q Consensus 385 --~~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~ 423 (626)
+...+-.| + ...+..+.|+++-+.++++.+.||-
T Consensus 396 dlPpQLLFVHqG-----Qke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 396 DLPPQLLFVHQG-----QKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cCCceeEEEecc-----hhHhhhheeccCCCCeEEEecccce
Confidence 11111111 2 2567788999987778998888873
No 155
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.7e-18 Score=171.71 Aligned_cols=293 Identities=18% Similarity=0.170 Sum_probs=207.0
Q ss_pred cCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
...+...+.||++.|.+|...|.| .|++|+.||+|+||.+.+|.|++++...+.|.|++|+|.....++.+..+..+.|
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence 344456778999999999999988 9999999999999999999999999999999999999943334444444444544
Q ss_pred EeCCCC--------------------------------------eEEEeccCCCCeEEEEEeeCCCEEEEEecC---CcE
Q 006909 336 WGVCEK--------------------------------------RVVDWADVRDVISAICYIPDGKGFIVGSIT---GTC 374 (626)
Q Consensus 336 wd~~~~--------------------------------------~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d---g~i 374 (626)
.+..-| .+.....|...|..+.|+..|.||++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 443211 012345567789999999999999997664 478
Q ss_pred EEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCC
Q 006909 375 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 454 (626)
Q Consensus 375 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g 454 (626)
.|+++.....+. .+ ....+.|.++.|+|..+ +|++++ ...|+|||+.....+-+.......|..++.+|.|
T Consensus 549 liHQLSK~~sQ~---PF----~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 549 LIHQLSKRKSQS---PF----RKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred EEEecccccccC---ch----hhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 888887654431 11 12237899999999864 455444 4689999987654444445567789999999999
Q ss_pred CEEEEEeCCccEEEEECCCCCCCC--CCccCCccceeeeccCCcEEEEecCCCCcccccc---cCCCccccCccccccCC
Q 006909 455 KHIISIGDDCRVYVWNYDELCFPS--SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL---CSSSLRDCSQKWDNLET 529 (626)
Q Consensus 455 ~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~---~~~~~~~~~~~w~~~~~ 529 (626)
..|+.++.|+.+..+|++-...+. ..+.......++||+.-..+|.+ ++||..+..- -++.+... .+-.
T Consensus 620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~-sdDgtv~Vfhg~VY~Dl~qnp-----liVP 693 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASG-SDDGTVIVFHGMVYNDLLQNP-----LIVP 693 (733)
T ss_pred CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeee-cCCCcEEEEeeeeehhhhcCC-----ceEe
Confidence 999999999999999998663332 22333445556888877777766 5555544321 12211110 0112
Q ss_pred CCcccCCCcc----cCCccccCCCCcccccCCCCCCCCCC
Q 006909 530 APWIRDSERF----SLGSWFSNDGPCRGSATWPAEKLPLW 565 (626)
Q Consensus 530 ~~~~~~~~~~----~~~~~~s~dg~~l~s~~~~d~~i~vw 565 (626)
...+++|... |....|+|.--++.+++. ++.|++|
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA-d~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA-DGTIRLF 732 (733)
T ss_pred eeeccCceeecccceEeecccCCCceEEecCC-CceEEee
Confidence 2234455443 777889999999999988 7899988
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.6e-18 Score=155.99 Aligned_cols=269 Identities=16% Similarity=0.216 Sum_probs=185.0
Q ss_pred ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC----eeeEeec-CCCCeEEEEEee-CCCCEEEEEeCCCcEEEEe
Q 006909 265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNP-IDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~p-~~~~~l~s~s~dg~v~iwd 337 (626)
.+|..-|.++.|.+.| ++++|+.|++|+|||.... .+....+ |.+.|..+.|.+ .-|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 3789999999999988 9999999999999997433 3333333 999999999964 4578999999999999997
Q ss_pred CCC----------CeEEEeccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeecc-------ccccC
Q 006909 338 VCE----------KRVVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-------RKKTS 398 (626)
Q Consensus 338 ~~~----------~~~~~~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~~ 398 (626)
-.. .+...+.+.+..|+.++|.|. |-.+++++.||.+|||+....-. +..+.+.. ....+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhhhhhhhccCCcccc
Confidence 521 113346677889999999994 77899999999999999754321 11222221 12234
Q ss_pred CCCeEEEEEcCCC--CcEEEEEeCC-----CcEEEEeCC----cceeeeeecCCCCCeEEEEEcCCC----CEEEEEeCC
Q 006909 399 GNKITGIQFSRDE--SQRIMITSED-----SKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTG----KHIISIGDD 463 (626)
Q Consensus 399 ~~~i~~l~~s~~~--~~~l~~~s~d-----g~i~iwd~~----~~~~~~~~~~~~~~v~~~~~sp~g----~~l~s~s~d 463 (626)
..+..|+.|+|.. ..+|++|+.+ +.++||... +....-....|..+|+.++|.|+- ..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 5678899998752 3478888776 588999744 333333445689999999999963 579999999
Q ss_pred ccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCc
Q 006909 464 CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGS 543 (626)
Q Consensus 464 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 543 (626)
| |+||++.....+... ++.. .|+.. .. -.++....+.+|.+.|-.+
T Consensus 249 g-v~I~~v~~~~s~i~~-------------ee~~-----~~~~~--~~-------------l~v~~vs~~~~H~~~VWrv 294 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEE-------------EEVL-----APDLM--TD-------------LPVEKVSELDDHNGEVWRV 294 (361)
T ss_pred c-EEEEEEeeccchhhh-------------hccc-----CCCCc--cc-------------cceEEeeeccCCCCceEEE
Confidence 9 999999864221110 0100 00000 00 0011122245566667777
Q ss_pred cccCCCCcccccCCCCCCCCCCCccc
Q 006909 544 WFSNDGPCRGSATWPAEKLPLWDVTI 569 (626)
Q Consensus 544 ~~s~dg~~l~s~~~~d~~i~vwd~~~ 569 (626)
.|..-|..|.|.+. ||.+++|...-
T Consensus 295 ~wNmtGtiLsStGd-DG~VRLWkany 319 (361)
T KOG2445|consen 295 RWNMTGTILSSTGD-DGCVRLWKANY 319 (361)
T ss_pred EEeeeeeEEeecCC-Cceeeehhhhh
Confidence 77777887777666 78888886553
No 157
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.3e-18 Score=176.45 Aligned_cols=262 Identities=14% Similarity=0.136 Sum_probs=194.7
Q ss_pred ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCC-eeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909 265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 341 (626)
Q Consensus 265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~ 341 (626)
..|+...+.|+|.|+| .|++|+.||.|++|+.... ..-..+. +...|.+++. ..++|++|+.+++|.+|....+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCC
Confidence 4788899999999998 8999999999999988665 4444444 7888888887 5569999999999999999887
Q ss_pred eEE-EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909 342 RVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 420 (626)
Q Consensus 342 ~~~-~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~ 420 (626)
+.- .+....-++.+++|+.+|+++|.|+.|-.|++.+......... .++|..+|.++.|+|.+ .+||+.+.
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~-------lrgh~apVl~l~~~p~~-~fLAvss~ 158 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV-------LRGHDAPVLQLSYDPKG-NFLAVSSC 158 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee-------ecccCCceeeeeEcCCC-CEEEEEec
Confidence 655 3455667899999999999999999999999999887665332 34556899999999998 89999999
Q ss_pred CCcEEEEeCCcceee--eee------cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCC---ccCCcccee
Q 006909 421 DSKLRILDGVDVIHK--FKG------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK---QKNSVRSCE 489 (626)
Q Consensus 421 dg~i~iwd~~~~~~~--~~~------~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~~~~~ 489 (626)
||.|++||+.+.... +.+ ......+..++|+|+|..++..+.|+.|++|+..+....... ......+++
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence 999999998743322 221 112445678999999888888889999999999987433322 222335555
Q ss_pred eeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCccc
Q 006909 490 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG 553 (626)
Q Consensus 490 ~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 553 (626)
.|+|.|.++|.+.-.++..+|...+. . .......|..++|-|++..+-
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t~---------------~-~~~~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDTH---------------E-RHEFKRAVCCEAWKPNANAIT 286 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEecccc---------------h-hccccceeEEEecCCCCCeeE
Confidence 66666666666655555555543321 0 112233467777777777443
No 158
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.8e-19 Score=177.88 Aligned_cols=258 Identities=19% Similarity=0.302 Sum_probs=187.7
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
++..|.+.|+.++|.|....|++++.||+|++|++...... -.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------------------------~~ 331 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------------------------AE 331 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-------------------------------------cc
Confidence 77889999999999999999999999999999999541100 00
Q ss_pred ccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe----------eeE-eecCCCCeEEEEEeeCCCCE
Q 006909 256 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----------CLN-VFDHHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~----------~~~-~~~~~~~v~~~~~~p~~~~~ 323 (626)
....++.++.+|.++|.|+++.+++ .+++|+.||+|+.|++.... ... ..+|.+.|+.+++++ ....
T Consensus 332 ~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~ 410 (577)
T KOG0642|consen 332 KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDR 410 (577)
T ss_pred cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccc
Confidence 1246789999999999999999887 89999999999999664211 111 226999999999999 8888
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEeccC--CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc---ccC
Q 006909 324 FISGSIDGKVRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK---KTS 398 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~ 398 (626)
|++++.||+|++|+........+... .+...++++-.. .++....+.....+++...........+.... ...
T Consensus 411 Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss--~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~ 488 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS--RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRR 488 (577)
T ss_pred eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc--hhHhhhhhcccccccchhhhhhhheeeccccCCCcccc
Confidence 99999999999999887666333322 233344444332 22222223334444443333222211111111 111
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
...+..+.++|.+ .+.+++..|+.|+++|..+.........|...++++++.|+|.+|++++.|+.+++|.+...
T Consensus 489 ~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 489 YPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cCccceEEecCCC-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 2457778888887 68999999999999998766666655668899999999999999999999999999999764
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1e-18 Score=161.55 Aligned_cols=245 Identities=21% Similarity=0.364 Sum_probs=183.9
Q ss_pred cccCcEEEEEEcCCC----CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 179 AHKGCIWTLKFSPDG----RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 179 ~H~~~V~~l~fspdg----~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
.|...-..++|+-|. .+||.||.-|.|+|.|+.+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~------------------------------------------ 124 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS------------------------------------------ 124 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch------------------------------------------
Confidence 377777888887543 3899999999999999987
Q ss_pred cccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec----CCCCeEEEEEeeCCCCEEEEEe
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~s~s 328 (626)
.+....+.+|...|+.|.++|.. +++++|.|..|++|++.+..|+..|+ |.+.|.++.|++ ++.+|++++
T Consensus 125 ---~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScG 200 (385)
T KOG1034|consen 125 ---GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCG 200 (385)
T ss_pred ---hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccC
Confidence 44567788999999999999986 99999999999999999999999994 999999999999 999999999
Q ss_pred CCCcEEEEeCCCCeEEE-----------------------------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEc
Q 006909 329 IDGKVRIWGVCEKRVVD-----------------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 379 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~-----------------------------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~ 379 (626)
.|.++++|++...+... ..-|+..|.|+.|- |+++++-+.++.|..|..
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKP 278 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEec
Confidence 99999999997433111 11233444444443 578899888999999987
Q ss_pred CCCceeee-------EEeeccccccCCCCeEEEE--EcCCCCcEEEEEeCCCcEEEEeCCcce----eeeeecCCCCCeE
Q 006909 380 SGNDLKLE-------KVDFHDRKKTSGNKITGIQ--FSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQM 446 (626)
Q Consensus 380 ~~~~~~~~-------~~~~~~~~~~~~~~i~~l~--~s~~~~~~l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~ 446 (626)
..-..... ....-++.......|.-+. |.|-+ ..|+.|...|.|.+||+.... .++........|.
T Consensus 279 gkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR 357 (385)
T KOG1034|consen 279 GKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR 357 (385)
T ss_pred chhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence 21111100 0111111222234444444 45555 689999999999999987422 2333333456889
Q ss_pred EEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 447 SASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 447 ~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
..+|+.||..|+...+|++|--||.-
T Consensus 358 Q~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 358 QTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999999999999864
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=7.1e-18 Score=155.64 Aligned_cols=247 Identities=21% Similarity=0.342 Sum_probs=174.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceee
Q 006909 185 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 264 (626)
Q Consensus 185 ~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (626)
..+.|||||..|++-+.|..+.+|++......... .+... ......+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~------------~~~~~---------------------~~~~~~~ 99 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA------------DGPLN---------------------FSKHLSY 99 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCC------------CCccc---------------------cccceeE
Confidence 45899999999999999999999998642110000 00000 0001111
Q ss_pred -ccCccceEEEEEc-------CCC-eEEEEeCCCcEEEeccCCCeeeEeec---CCC---CeEEEEEeeCCCCEEEEEeC
Q 006909 265 -HGHKGDVLDLAWS-------NSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHN---YVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 265 -~~h~~~V~~l~~s-------~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~---~v~~~~~~p~~~~~l~s~s~ 329 (626)
......|...+|- |+. ++++.+.+.-|++||.-+|+....+. |.. ...+++|+| +|.+|++|.
T Consensus 100 r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy- 177 (406)
T KOG2919|consen 100 RYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY- 177 (406)
T ss_pred EeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-
Confidence 1234567777774 443 88999999999999999998887764 444 356899999 999998775
Q ss_pred CCcEEEEeC-CCCeEE---E-----eccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCC
Q 006909 330 DGKVRIWGV-CEKRVV---D-----WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 399 (626)
Q Consensus 330 dg~v~iwd~-~~~~~~---~-----~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 399 (626)
...|++||+ +.|+-. . ..+..+.|.+++|+| +.+.+++|+....+-||.-.+...... + ..|.
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l-l------ggh~ 250 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL-L------GGHG 250 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee-e------cccC
Confidence 688999999 555422 2 233467899999999 455899999999998988766554322 1 1346
Q ss_pred CCeEEEEEcCCCCcEEEEEeC-CCcEEEEeCCcceee-eeecCCCC---CeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 400 NKITGIQFSRDESQRIMITSE-DSKLRILDGVDVIHK-FKGLPKSG---SQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~-dg~i~iwd~~~~~~~-~~~~~~~~---~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+.|+.++|.++| +.|++|+. |..|..||++..... +....|.. .-.-....|++++|++|+.||.|++||+++.
T Consensus 251 gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 251 GGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred CCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 899999999998 56777665 789999998854332 22222322 2233455799999999999999999999984
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=2.1e-18 Score=167.35 Aligned_cols=207 Identities=18% Similarity=0.265 Sum_probs=162.3
Q ss_pred CeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCC--CCeEEE
Q 006909 280 NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR--DVISAI 356 (626)
Q Consensus 280 ~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~i~~i 356 (626)
-++++|+..++|+|||++...+.+.+ .|...|+++.++- ...+|++++..|.|.|..+.++.......+. ..|.-+
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll 170 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL 170 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence 48999999999999999966666655 4999999999998 8899999999999999999988766555443 456689
Q ss_pred EEeeCCCE-EEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee
Q 006909 357 CYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK 435 (626)
Q Consensus 357 ~~sp~g~~-l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~ 435 (626)
.|+|..+. |.+++.+|.|.+||+.+....... ...|..+...|+|+|.+..+|++.+.|..|.+||++.....
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~------~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA------SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccCCCcccch------hhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence 99997765 556888999999999887654332 33455889999999998889999999999999998733221
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc--cCCccceeeeccC
Q 006909 436 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ--KNSVRSCEHFFSE 494 (626)
Q Consensus 436 ~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~ 494 (626)
.......+...++|+++|.+|+.|+..|.|+.||+.....|.... ....+.+++|.+.
T Consensus 245 -~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 245 -DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred -ceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 112246789999999999999999999999999999875443321 1223455566543
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=3.3e-18 Score=171.27 Aligned_cols=268 Identities=21% Similarity=0.305 Sum_probs=200.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909 183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 262 (626)
Q Consensus 183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (626)
.|..++|-|||..|+.+..+ .+.|||... +..++
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~nd---------------------------------------------G~llq 47 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSD---------------------------------------------GTLLQ 47 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCC---------------------------------------------ccccc
Confidence 79999999999988777644 599999987 56688
Q ss_pred eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909 263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 341 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~ 341 (626)
++++|...|++++|+.+| .+++|+.|+.|.+|.-.- +-+-.+.|.+.|.|+.|+| -.+.+++++.. ..-+|....+
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK 124 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQK 124 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeeccCCeeeEeecCc-hHHHhhhcchh-hccccChhhh
Confidence 999999999999999998 899999999999998652 2334567999999999999 88889998864 4778987665
Q ss_pred eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC----cEEEE
Q 006909 342 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES----QRIMI 417 (626)
Q Consensus 342 ~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~----~~l~~ 417 (626)
.+.. ......+.+++|..||++++.|-.+|+|.+-+..+.... .+. +..+...+|.+++|+|..+ ..+++
T Consensus 125 ~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~--~I~---Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 125 SVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV--KIE---RPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred hHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce--EEe---CCCCCCCCceEEEecCCCCCCccceEEE
Confidence 4433 334567889999999999999999999999865544322 111 2334468999999999632 35666
Q ss_pred EeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCc
Q 006909 418 TSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV 496 (626)
Q Consensus 418 ~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~ 496 (626)
.....++.++.+.. .+..- ..-.-...++.+-++|.|++.|+.|+.+.+|..++-..-.......-+-.+..+|++.
T Consensus 199 ~DW~qTLSFy~LsG~~Igk~--r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLSGKQIGKD--RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQ 276 (1081)
T ss_pred EeccceeEEEEecceeeccc--ccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCc
Confidence 66667777776432 11111 1123345688889999999999999999999987754444444444455567889999
Q ss_pred EEEEecCCCCc
Q 006909 497 SVAVQWPGIGT 507 (626)
Q Consensus 497 ~~av~~s~~~~ 507 (626)
+++++.-++..
T Consensus 277 ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 277 YVVVGCQDGTI 287 (1081)
T ss_pred eEEEEEccCee
Confidence 88887544443
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=2.3e-16 Score=165.61 Aligned_cols=369 Identities=24% Similarity=0.351 Sum_probs=239.2
Q ss_pred ccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccc
Q 006909 176 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 255 (626)
Q Consensus 176 ~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (626)
.+.+|...|.++.|.+.+..++.++.|+.+.+|+.....
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----------------------------------------- 98 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE----------------------------------------- 98 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-----------------------------------------
Confidence 466899999999999999999999999999999988632
Q ss_pred ccCCCceeeccCc-cceEEEEE-cCCC--eEEEEeC-CCcEEEeccCC-CeeeEee-cCCCCeEEEEEeeCCCCEEEEEe
Q 006909 256 IEESPLQELHGHK-GDVLDLAW-SNSN--YLLSCSM-DKTVRMWQVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 256 ~~~~~~~~~~~h~-~~V~~l~~-s~~~--~l~s~s~-d~~v~iwd~~~-~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
..+..+.++. ..+..+.+ ++++ .++..+. |+.+.+|+... ......+ .|...|..++|+| ++..+++++
T Consensus 99 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 174 (466)
T COG2319 99 ---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGS 174 (466)
T ss_pred ---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecC
Confidence 0233344433 36666666 6655 3444444 99999999997 4554444 5889999999999 888888888
Q ss_pred C-CCcEEEEeCCCCeEE-EeccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909 329 I-DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 329 ~-dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
. |+.+++|++..+... ....|...+.+++|+|++. .+++++.|+.+++||........... ..|.... ..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~-~~ 247 (466)
T COG2319 175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL------SGHSDSV-VS 247 (466)
T ss_pred CCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeec------CCCCcce-eE
Confidence 5 999999999975544 4556899999999999998 44455999999999877444322111 1122332 22
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCccee-eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCC
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS 484 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 484 (626)
.|+|++ .++++++.|+.+++|+...... ......|...+.++.|+|++..+++++.|+.+.+|+..+........
T Consensus 248 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--- 323 (466)
T COG2319 248 SFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--- 323 (466)
T ss_pred eECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee---
Confidence 899997 7888999999999999774332 22224568899999999999999999989999999887763221111
Q ss_pred ccceeeeccCCcEEEEecCCCCcccccc-cCCCccccCccccccCCCC-cccCCCcccCCccccCCCCcccccCCCCCCC
Q 006909 485 VRSCEHFFSEGVSVAVQWPGIGTEQKSL-CSSSLRDCSQKWDNLETAP-WIRDSERFSLGSWFSNDGPCRGSATWPAEKL 562 (626)
Q Consensus 485 ~~~~~~~~~~g~~~av~~s~~~~~l~~~-~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i 562 (626)
...+.+.+..+.+.+++..+... ..+ ..+..|....... ........+..+.+++ ..........++.+
T Consensus 324 -----~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 394 (466)
T COG2319 324 -----LKGHEGPVSSLSFSPDGSLLVSGGSDD---GTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTV 394 (466)
T ss_pred -----ecccCCceEEEEECCCCCEEEEeecCC---CcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCce
Confidence 01111123333331111122111 111 2222233322221 1111111156777777 43233312236789
Q ss_pred CCCCcccCCCCCCCChhhHHHHhhhccC--CccccccccccceEEEEecCCceEeeeeecC
Q 006909 563 PLWDVTIDSDGYCQDPQQQRLQQQCLNN--VDDVRAISATWGLVIVTAGCDGMIKTFHNYG 621 (626)
Q Consensus 563 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~~g 621 (626)
.+|+..... ........ ......+++ ++..+++++.++++++|+...
T Consensus 395 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 395 RLWDLSTGS-----------LLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEecccCe-----------eeeeccCCCCcEEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 999988762 11111111 111122233 788899999999999999765
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=4.7e-18 Score=170.24 Aligned_cols=244 Identities=18% Similarity=0.293 Sum_probs=191.8
Q ss_pred ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
.-.+.++|+||++.|+|++|+.||+.+|+|+.|..|.||+-.-
T Consensus 42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl------------------------------------- 84 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL------------------------------------- 84 (1081)
T ss_pred CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-------------------------------------
Confidence 3456789999999999999999999999999999999997643
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
+. .--..|...|.|+.|+|-+ .|++|+-. ..-+|..... .+........+.+++|.. +|.+|+.|-
T Consensus 85 --------EG--~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtn-DGqylalG~ 151 (1081)
T KOG1538|consen 85 --------EG--ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTN-DGQYLALGM 151 (1081)
T ss_pred --------cc--eeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecC-CCcEEEEec
Confidence 00 1123699999999999976 78887764 5678877643 233334566889999998 999999999
Q ss_pred CCCcEEEEeCCCCeEEEec---cCCCCeEEEEEeeCC-----CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909 329 IDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDG-----KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g-----~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 400 (626)
.+|+|.+-+-...+...+. +...+|.+++|+|.. ..+++.....++.+|.+.+..... .+.-+.
T Consensus 152 ~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk--------~r~L~F 223 (1081)
T KOG1538|consen 152 FNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK--------DRALNF 223 (1081)
T ss_pred cCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc--------cccCCC
Confidence 9999999887665544433 467889999999953 578888888899999887654321 222235
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
...|+++.++| .+++.|+.|+.+.+|. ++.+..-+......+|.++...|++++++.|+.||+|-.|++..
T Consensus 224 dP~CisYf~NG-Ey~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 224 DPCCISYFTNG-EYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CchhheeccCC-cEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 56789999998 7999999999999997 34444333333677999999999999999999999999999853
No 165
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=168.06 Aligned_cols=288 Identities=20% Similarity=0.270 Sum_probs=214.2
Q ss_pred cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
..+.+...|..|.|.|+.+.|...|..|++|+.|..|.+||+..+..
T Consensus 130 qr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~--------------------------------- 176 (559)
T KOG1334|consen 130 QRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP--------------------------------- 176 (559)
T ss_pred HHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc---------------------------------
Confidence 34556677889999999999999999999999999999999987321
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcCC---CeEEEEeCCCcEEEeccC-CCeeeEe---ecCCCCeEEEEEeeCCC
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVG-CNQCLNV---FDHHNYVTCVQFNPIDD 321 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~---~~l~s~s~d~~v~iwd~~-~~~~~~~---~~~~~~v~~~~~~p~~~ 321 (626)
.+.-..||...|....|.|. ..+++++.||.|++=.+. ++.+..+ ..|.++|.-++.-|.+.
T Consensus 177 -----------~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp 245 (559)
T KOG1334|consen 177 -----------KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP 245 (559)
T ss_pred -----------ccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC
Confidence 12333478888888888874 389999999999998764 3433322 25999999999999888
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEE----eccCCC---CeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCcee-----eeE
Q 006909 322 NYFISGSIDGKVRIWGVCEKRVVD----WADVRD---VISAICYIPDGK-GFIVGSITGTCHFYKASGNDLK-----LEK 388 (626)
Q Consensus 322 ~~l~s~s~dg~v~iwd~~~~~~~~----~~~~~~---~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~-----~~~ 388 (626)
..|.+++.|+.+.-+|++.+.... ...... ...+++.+|... .+++|+.|..+++||.+.-... +..
T Consensus 246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~ 325 (559)
T KOG1334|consen 246 KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDK 325 (559)
T ss_pred CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhh
Confidence 999999999999999998754322 222222 567889999654 8999999999999998754432 111
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--------------cc-eeeeeecCCCCCeEEEEE-cC
Q 006909 389 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--------------DV-IHKFKGLPKSGSQMSASF-TT 452 (626)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--------------~~-~~~~~~~~~~~~v~~~~~-sp 452 (626)
+..+.........|++++|+.++ .-++++..|-.|+++.-. .. .+.|+++.+...|..+.| -|
T Consensus 326 f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP 404 (559)
T KOG1334|consen 326 FCPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP 404 (559)
T ss_pred cCCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC
Confidence 21111122334679999999887 467777788889998521 11 233778777788888876 68
Q ss_pred CCCEEEEEeCCccEEEEECCCCCCC-CCCccCCccceeeeccCCcEEEEe
Q 006909 453 TGKHIISIGDDCRVYVWNYDELCFP-SSKQKNSVRSCEHFFSEGVSVAVQ 501 (626)
Q Consensus 453 ~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~g~~~av~ 501 (626)
...|+++||+-|.|.||+-.++... ....-..++.|+.-||.-.++|.+
T Consensus 405 rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 405 RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 8999999999999999999887332 222333478888888877766554
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=3.7e-18 Score=165.64 Aligned_cols=214 Identities=16% Similarity=0.274 Sum_probs=172.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceee
Q 006909 185 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 264 (626)
Q Consensus 185 ~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (626)
.|++......|+++||..+.|+|||+.. ....+.+
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~---------------------------------------------kl~hr~l 117 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRA---------------------------------------------KLIHRFL 117 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHH---------------------------------------------HHHhhhc
Confidence 3444334448999999999999999985 2335677
Q ss_pred ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCC--CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909 265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 341 (626)
Q Consensus 265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~ 341 (626)
.+|+..|+++.++... +|++++..|.|.|..+.+++....|.+. ..|.-+.|+|....+|.+++.+|.|.+||+.+.
T Consensus 118 kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 118 KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence 8999999999998654 9999999999999999999998888755 467799999966677889999999999999876
Q ss_pred eEEE--eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909 342 RVVD--WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 418 (626)
Q Consensus 342 ~~~~--~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~ 418 (626)
.... ...|..+...|||+|. ..+|++.+.|..|.+||....... ..+.. ..+.+.++|+++| .+|++|
T Consensus 198 sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~-~~l~y-------~~Plstvaf~~~G-~~L~aG 268 (673)
T KOG4378|consen 198 SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST-DRLTY-------SHPLSTVAFSECG-TYLCAG 268 (673)
T ss_pred CcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc-ceeee-------cCCcceeeecCCc-eEEEee
Confidence 6543 4578899999999995 567788899999999999865432 22222 2689999999998 899999
Q ss_pred eCCCcEEEEeCCc---ceeeeeecCCCCCeEEEEEcCCC
Q 006909 419 SEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTG 454 (626)
Q Consensus 419 s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~g 454 (626)
...|.|..||++. ++... +.|...|++++|-|.-
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~--sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVR--SAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCceEEEEecccCCCCceEe--eecccceeEEEeeecc
Confidence 9999999999873 33333 4478889999997654
No 167
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=4.7e-19 Score=181.68 Aligned_cols=275 Identities=23% Similarity=0.366 Sum_probs=202.5
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
.+..+.|.||..+|.|+.|...|.+++||+.|..++||..++
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-------------------------------------- 221 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-------------------------------------- 221 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccc--------------------------------------
Confidence 445667889999999999999999999999999999999887
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEe
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
..++....||.+.|+.++.+.++ .++++|.|..|++|.+.++.++..+ +|++.|++++|+| - .+.+
T Consensus 222 -------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-~----~sss 289 (1113)
T KOG0644|consen 222 -------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-R----ASSS 289 (1113)
T ss_pred -------hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-c----ccCC
Confidence 45577889999999999999877 8899999999999999999998877 5999999999999 2 3778
Q ss_pred CCCcEEEEeCCCCeEEE-----eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 329 IDGKVRIWGVCEKRVVD-----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~-----~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
.||++++||.+-..... ......-+.++.|...+..+++|+.|+.-..|.+....... ..+.
T Consensus 290 ~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-------------~~li 356 (1113)
T KOG0644|consen 290 DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-------------NLLI 356 (1113)
T ss_pred CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc-------------cceE
Confidence 89999999998222211 12234557788888899999999999988887654322111 1122
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCE-EEEEeCCccEEEEECCCCCCCCCC
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYVWNYDELCFPSSK 480 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~-l~s~s~dg~I~iwd~~~~~~~~~~ 480 (626)
-+.++.+-..+.+++-.+-.+.+|++.+. .+...+ |...+..+.++|-... ..+++.||.+.|||+-.+......
T Consensus 357 f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 357 FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred EEeccccccccceeeeeeeEeeeeecccchhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence 22222232246677777888999997765 444444 7778888999996654 568899999999999887322221
Q ss_pred cc-CCccceeeeccCCcEEEEecCCCCcccccc
Q 006909 481 QK-NSVRSCEHFFSEGVSVAVQWPGIGTEQKSL 512 (626)
Q Consensus 481 ~~-~~~~~~~~~~~~g~~~av~~s~~~~~l~~~ 512 (626)
.. .....-.+|+++|..+++. ++...+..+
T Consensus 435 ~~gh~kl~d~kFSqdgts~~ls--d~hgql~i~ 465 (1113)
T KOG0644|consen 435 FIGHGKLVDGKFSQDGTSIALS--DDHGQLYIL 465 (1113)
T ss_pred ecccceeeccccCCCCceEecC--CCCCceEEe
Confidence 11 1122223788888876664 444444433
No 168
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=4.6e-17 Score=148.25 Aligned_cols=230 Identities=18% Similarity=0.331 Sum_probs=170.8
Q ss_pred ccCccceEEEEEcCCC------eEEEEeCCCcEEEeccCC--Ceee--Ee------ecCCCCeEEEEEeeCCCCEEEEEe
Q 006909 265 HGHKGDVLDLAWSNSN------YLLSCSMDKTVRMWQVGC--NQCL--NV------FDHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 265 ~~h~~~V~~l~~s~~~------~l~s~s~d~~v~iwd~~~--~~~~--~~------~~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
..|..+++.+.|.|+. +|+|++ | .+|+|.+.. .+.. .. -.+..++++..|+..+.+++.+.|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 3688999999999863 344443 3 699999863 2211 11 136679999999999999999999
Q ss_pred CCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 329 IDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 329 ~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
.|-+..|||+.++. ...+..|...|..++|...+ +.+++.+.||.+|+||++...... +.... .....+..
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST--IIYE~--p~~~~pLl 246 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST--IIYED--PSPSTPLL 246 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce--EEecC--CCCCCcce
Confidence 99999999999873 34578999999999999855 578899999999999998765432 22221 12246889
Q ss_pred EEEEcCCCCcEEEEEeCC-CcEEEEeCCcce-eeeeecCCCCCeEEEEEcCC-CCEEEEEeCCccEEEEECCCCCCCCCC
Q 006909 404 GIQFSRDESQRIMITSED-SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSK 480 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~d-g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~ 480 (626)
.++|+++..+++++-..| ..|.|.|++.+. .......|.+.|++++|.|. ..+|+++++|..+.+||+......
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~--- 323 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE--- 323 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc---
Confidence 999999988888887665 589999988432 23334559999999999996 578999999999999999875221
Q ss_pred ccCCccceeeeccCCcEEEEecCCC
Q 006909 481 QKNSVRSCEHFFSEGVSVAVQWPGI 505 (626)
Q Consensus 481 ~~~~~~~~~~~~~~g~~~av~~s~~ 505 (626)
......+++...+.+.-+.|++.
T Consensus 324 --~~~dPilay~a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 324 --NGEDPILAYTAGGEVNQIQWSSS 346 (364)
T ss_pred --CCCCchhhhhccceeeeeeeccc
Confidence 11122334445666777777744
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=9.7e-18 Score=150.67 Aligned_cols=243 Identities=15% Similarity=0.288 Sum_probs=176.9
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
...|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r--------------------------------------- 46 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER--------------------------------------- 46 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCc---------------------------------------
Confidence 445679999999999988775 8999999999999998843
Q ss_pred ccccCCCceeec-cCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeE-----------------------------
Q 006909 254 FQIEESPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN----------------------------- 303 (626)
Q Consensus 254 ~~~~~~~~~~~~-~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~----------------------------- 303 (626)
+...+. .|...|+.+.--|++.|.+-+.|+.+.+|++..+..+.
T Consensus 47 ------~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 47 ------DLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred ------cchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheec
Confidence 233333 34556666666666667777777777777664321110
Q ss_pred --------------------ee-----cCCCCeEEEEEeeCCCC--EEEEEeCCCcEEEEeCCCCe-----------EEE
Q 006909 304 --------------------VF-----DHHNYVTCVQFNPIDDN--YFISGSIDGKVRIWGVCEKR-----------VVD 345 (626)
Q Consensus 304 --------------------~~-----~~~~~v~~~~~~p~~~~--~l~s~s~dg~v~iwd~~~~~-----------~~~ 345 (626)
.. ...+.+.|..+...++. +++.|-.+|.|.+||+.++. +..
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~ 200 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP 200 (323)
T ss_pred CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence 00 01233555554332333 46678889999999998863 223
Q ss_pred eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc--eeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909 346 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND--LKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 422 (626)
Q Consensus 346 ~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~--~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg 422 (626)
...|..+|.++.|.+.-..=++|+.+..+..|.+.... ++.. ..... .-.|..+..-||+ +.+++++.|+
T Consensus 201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk------npGv~gvrIRpD~-KIlATAGWD~ 273 (323)
T KOG0322|consen 201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK------NPGVSGVRIRPDG-KILATAGWDH 273 (323)
T ss_pred hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec------CCCccceEEccCC-cEEeecccCC
Confidence 55788999999999877777888889999999886542 2222 11111 2568889999997 7999999999
Q ss_pred cEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 423 KLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 423 ~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
.|+||..++ +...++. |.+.|++++|+|+...+|++|.|++|.+|++
T Consensus 274 RiRVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 274 RIRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999775 4444554 7899999999999999999999999999986
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=7.7e-17 Score=167.67 Aligned_cols=424 Identities=14% Similarity=0.181 Sum_probs=252.5
Q ss_pred ccccccccccCcEEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccC------CCCCeeeecCCCC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSN------AKEGKIKFGKKKS 242 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg~---~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 242 (626)
.+.+.|.+|..+++.+.+.|... ++.+++.||.|++||...+.... .+......... .......+.....
T Consensus 48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk-t~~~~~~v~~~~~~~~~a~~s~~~~~s~~~ 126 (792)
T KOG1963|consen 48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK-TFDNNLPVHALVYKPAQADISANVYVSVED 126 (792)
T ss_pred hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE-EEecCCceeEEEechhHhCccceeEeeccc
Confidence 34557889999999999988654 78899999999999998764422 11111111000 0000011000000
Q ss_pred CCceeecCC----c-----cccccCCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEe-----ecCC
Q 006909 243 SHVPVVIPD----E-----VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHH 308 (626)
Q Consensus 243 ~~~~~~~~~----~-----~~~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~-----~~~~ 308 (626)
......... . +-.....+...+..|.. -.+|.+++.+.+.....+..+.+|+...+..... ..|.
T Consensus 127 ~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Ht 205 (792)
T KOG1963|consen 127 YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHT 205 (792)
T ss_pred ceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhc
Confidence 000000000 0 00001111222233333 4567788888777777788899999987551111 1377
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc
Q 006909 309 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 383 (626)
Q Consensus 309 ~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~ 383 (626)
-.++|.+++| +++++++|..||.|.+|.--. .....+.=|...|++++|+++|.+|++|+..|.+.+|.+.+++
T Consensus 206 f~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 206 FNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 7799999999 999999999999999995432 2233344577899999999999999999999999999999887
Q ss_pred eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee--eeeec---------CCCCCeEEEEEcC
Q 006909 384 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--KFKGL---------PKSGSQMSASFTT 452 (626)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~---------~~~~~v~~~~~sp 452 (626)
...- +.-+.+|..+.++||+ .+.+....|+.|.+....+... .+.+. ...+-.+.++++|
T Consensus 285 kqfL--------PRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 285 KQFL--------PRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP 355 (792)
T ss_pred cccc--------cccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC
Confidence 4321 1124899999999997 6888888899999998643211 11111 1234567888999
Q ss_pred CCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCC-----cEEEEecCCCCcccccccCC-------Ccccc
Q 006909 453 TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEG-----VSVAVQWPGIGTEQKSLCSS-------SLRDC 520 (626)
Q Consensus 453 ~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~av~~s~~~~~l~~~~~~-------~~~~~ 520 (626)
.-+.++-.+..|.|.+||+-+.......+.- -...+++. .+.+++.+-.|..++..... .....
T Consensus 356 r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~----~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 356 RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVC----DENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred CCCceeecCCCceEEEEeccccceeeeEEEE----eecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 7777888889999999999875322111110 00111111 12345555556655543211 11233
Q ss_pred CccccccCCC-------CcccCCCcccCCccc-cCCCC-cccccCCCCCCCCCCCcccCC------CCCCCChhhHHHHh
Q 006909 521 SQKWDNLETA-------PWIRDSERFSLGSWF-SNDGP-CRGSATWPAEKLPLWDVTIDS------DGYCQDPQQQRLQQ 585 (626)
Q Consensus 521 ~~~w~~~~~~-------~~~~~~~~~~~~~~~-s~dg~-~l~s~~~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~ 585 (626)
+++|...... ....+|+......+| ++-.. +.++++. ++.+++|-....+ ..-.| ....
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~-dg~~KiW~~~~~~n~~k~~s~W~c-----~~i~ 505 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASV-DGDFKIWVFTDDSNIYKKSSNWTC-----KAIG 505 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEecc-CCeEEEEEEecccccCcCccceEE-----eeee
Confidence 5666653321 223445444333333 34333 6777777 7899999774331 00011 0011
Q ss_pred hhccCCccccccccccceEEEEecCCceEeeeee
Q 006909 586 QCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 586 ~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~ 619 (626)
.++.......+++. || .++++|.|++|.+|+.
T Consensus 506 sy~k~~i~a~~fs~-dG-slla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 506 SYHKTPITALCFSQ-DG-SLLAVSFDDTITIWDY 537 (792)
T ss_pred ccccCcccchhhcC-CC-cEEEEecCCEEEEecC
Confidence 12222222234455 77 5888899999999984
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=2.2e-17 Score=157.09 Aligned_cols=265 Identities=22% Similarity=0.389 Sum_probs=183.6
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
....|..|..+|+++.|+|+|..||+|+++|.|.+|........ ..+. . ......
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~----~~d~--e-------------------~~~~ke 111 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF----DADT--E-------------------ADLNKE 111 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc----cccc--h-------------------hhhCcc
Confidence 34567899999999999999999999999999999987641110 0000 0 000000
Q ss_pred cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
.....+.+.+|...|..++|+|++ .+++++.|..+++||+..|+....+. |...|..++|.| -++++++-+.|
T Consensus 112 ----~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~d 186 (434)
T KOG1009|consen 112 ----KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSD 186 (434)
T ss_pred ----ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccC
Confidence 012246677899999999999998 89999999999999999999998885 999999999999 89999999999
Q ss_pred CcEEEEeCCCCeEEEecc--------------------C----CCCeEEEEEeeCCCEEEEEec----CC-----cEEEE
Q 006909 331 GKVRIWGVCEKRVVDWAD--------------------V----RDVISAICYIPDGKGFIVGSI----TG-----TCHFY 377 (626)
Q Consensus 331 g~v~iwd~~~~~~~~~~~--------------------~----~~~i~~i~~sp~g~~l~~g~~----dg-----~i~i~ 377 (626)
...+.+.+...++..... | +.-...++|+|+|..+++... .+ +.++|
T Consensus 187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvf 266 (434)
T KOG1009|consen 187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVF 266 (434)
T ss_pred cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEee
Confidence 888877776544332111 0 111345789999999988542 22 23444
Q ss_pred EcCCCceeeeEEeeccccccCCCCeEEEEEcCC--------C--------CcEEEEEeCCCcEEEEeCCcce--eeeeec
Q 006909 378 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD--------E--------SQRIMITSEDSKLRILDGVDVI--HKFKGL 439 (626)
Q Consensus 378 d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~--------~--------~~~l~~~s~dg~i~iwd~~~~~--~~~~~~ 439 (626)
+-..-..+...+.. ...+...+.|+|- . -+.+++....+.|.|||+.... ......
T Consensus 267 srk~l~rP~~~lp~------~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~ni 340 (434)
T KOG1009|consen 267 SRKDLKRPAARLPS------PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNI 340 (434)
T ss_pred ccccccCceeecCC------CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeee
Confidence 43322222221111 1234444444331 0 0244555566789999988643 333322
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 440 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 440 ~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
|-..++.++|+++|.+|+..|.||-..+--++..
T Consensus 341 -hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 341 -HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred -eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 7789999999999999999999998888777765
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3.8e-17 Score=154.69 Aligned_cols=206 Identities=20% Similarity=0.303 Sum_probs=162.4
Q ss_pred ceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeee-------E-eecCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 261 LQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCL-------N-VFDHHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~-------~-~~~~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
.-.+.||+++|.+++|+|- ..++|||.|.+|.||++-.+... . ..+|...|.-++|+|...+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 4456799999999999984 48999999999999998654332 2 235999999999999889999999999
Q ss_pred CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 331 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 331 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
.+|.+|++.+++.+....|.+.|.+++|+.+|.+|++.+.|..|+|||.+.+....+..... +.....+.|-.+
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he------G~k~~Raifl~~ 227 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE------GAKPARAIFLAS 227 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc------CCCcceeEEecc
Confidence 99999999999977777799999999999999999999999999999999988765542222 245566778888
Q ss_pred CCcEEEEEe----CCCcEEEEeCCcceee--eeecCCCCCeEEEEEcCCCCEEEEEe-CCccEEEEECCCC
Q 006909 411 ESQRIMITS----EDSKLRILDGVDVIHK--FKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 474 (626)
Q Consensus 411 ~~~~l~~~s----~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~iwd~~~~ 474 (626)
| . +++.+ .+.++-+||..+.... +........|.---|.+|...|..++ .|+.|+-|.+.+.
T Consensus 228 g-~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 228 G-K-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred C-c-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 7 4 55543 3578999996543222 22223445666666788888877655 6999999999875
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.5e-17 Score=153.42 Aligned_cols=191 Identities=14% Similarity=0.237 Sum_probs=150.3
Q ss_pred CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeC-CCCEEEEEeCCCcEEEEeCCCCeEE---EeccCC-CCe
Q 006909 280 NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGSIDGKVRIWGVCEKRVV---DWADVR-DVI 353 (626)
Q Consensus 280 ~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~-~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~~~-~~i 353 (626)
..++++-..|.|++||..+++.+..|. ++..++.++|... .++.+.+++.||+|++||++..... .+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 468888889999999999999999995 7778888888763 4678999999999999999875432 334443 567
Q ss_pred EEEEEeeCCCEEEEEec----CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909 354 SAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 429 (626)
Q Consensus 354 ~~i~~sp~g~~l~~g~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~ 429 (626)
.+++....++.+++|+. +-.+.+||++..+..+..+ ...|...||++.|+|..+.+|++|+.||-|.|||+
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~-----~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL-----NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh-----hhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 77777778888888864 5689999999887643322 23456899999999999999999999999999998
Q ss_pred Ccce---eeeeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECCCCC
Q 006909 430 VDVI---HKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 430 ~~~~---~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~~~~ 475 (626)
.... .......+...|..+.|..++ +.|.+-+...+..+|+++.+.
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 6321 122223356779999998777 558888899999999999873
No 174
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.8e-18 Score=182.93 Aligned_cols=238 Identities=16% Similarity=0.221 Sum_probs=171.4
Q ss_pred ccceEEEEEcCC-----CeEEEEeCCCcEEEeccCC---Ceee---Eee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 268 KGDVLDLAWSNS-----NYLLSCSMDKTVRMWQVGC---NQCL---NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 268 ~~~V~~l~~s~~-----~~l~s~s~d~~v~iwd~~~---~~~~---~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
....+.++|.+. |.|+.|..||.|.+||... +... .++ .|++.|..+.|++..++.|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456788999753 4699999999999999865 3222 222 499999999999978889999999999999
Q ss_pred EeCCCCeEEE---eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 336 WGVCEKRVVD---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 336 wd~~~~~~~~---~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
||+..-+.-. .....+.|.+++|+.. ...|++++.+|.+.|||++..+..+..-...+ ...+..++|+|++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~-----~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG-----RMHCSVLAWHPDH 218 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC-----ccceeeeeeCCCC
Confidence 9998733222 2234577999999874 45788899999999999998865443222221 1558899999999
Q ss_pred CcEEEEEeCCC---cEEEEeCC---cceeeeeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECCCCCCCCCCcc-C
Q 006909 412 SQRIMITSEDS---KLRILDGV---DVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQK-N 483 (626)
Q Consensus 412 ~~~l~~~s~dg---~i~iwd~~---~~~~~~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~ 483 (626)
...+++++.|. .|.+||++ ...+.+++ |...|.++.|++.+ .+|++++.|+.|.+|+.+++........ .
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC
Confidence 88888888774 79999987 34555544 88999999999876 8999999999999999999743322211 1
Q ss_pred CccceeeeccCCc-EEEEecCCCCcccccc
Q 006909 484 SVRSCEHFFSEGV-SVAVQWPGIGTEQKSL 512 (626)
Q Consensus 484 ~~~~~~~~~~~g~-~~av~~s~~~~~l~~~ 512 (626)
.-..-+.|.|... .+|++.-.+...++.+
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeee
Confidence 2222234555444 3344433333444443
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.2e-17 Score=152.33 Aligned_cols=208 Identities=19% Similarity=0.307 Sum_probs=164.2
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC------CCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~------~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
.+.+.+|.+.|++|.|+.++ .|++|+.|..+++|+++ +.+++.... |...|.|++|+. .+.++++|..++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcc
Confidence 45677999999999999877 89999999999999984 345666654 557999999998 888999999999
Q ss_pred cEEEEeCCCCeEEEeccCCC---CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 332 KVRIWGVCEKRVVDWADVRD---VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 332 ~v~iwd~~~~~~~~~~~~~~---~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
+|.+.|+.+.+.+....+.. .|..+..+|-.+.|++.+.++.|.+||.+........+.... .+.....+.|+
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN----~~~~F~t~~F~ 203 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN----SGKNFYTAEFH 203 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC----CCccceeeeec
Confidence 99999999999887777655 899999999999999999999999999987764444332221 23567888999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCcceeee------eecCC-CCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 409 RDESQRIMITSEDSKLRILDGVDVIHKF------KGLPK-SGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~------~~~~~-~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
|-.+.+|++.+..+-+.+||.+.....+ .+... ...-+++.|+|+|+.+++--....-.+||+-+
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence 9988999999999999999977433221 11111 22336788999999988776555556667655
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.6e-17 Score=151.63 Aligned_cols=258 Identities=19% Similarity=0.269 Sum_probs=180.8
Q ss_pred cccccccccccCcEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 171 LYTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fsp--dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
....+.+++|+..++.++|.. .+..+.+|+.||+|++||+.....
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--------------------------------- 106 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--------------------------------- 106 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh---------------------------------
Confidence 446678899999999999987 456899999999999999987322
Q ss_pred cCCccccccCCCceeeccCc-cceEEEEEcCCC-eEEEEe----CCCcEEEeccCCCee-eEee--cCCCCeEEEEEeeC
Q 006909 249 IPDEVFQIEESPLQELHGHK-GDVLDLAWSNSN-YLLSCS----MDKTVRMWQVGCNQC-LNVF--DHHNYVTCVQFNPI 319 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~-~l~s~s----~d~~v~iwd~~~~~~-~~~~--~~~~~v~~~~~~p~ 319 (626)
.+.....+|. .+..+++.+-.+ .+++|. .+-.|.+||++..+. +..+ .|.+.|++++|+|.
T Consensus 107 ----------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 107 ----------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS 176 (376)
T ss_pred ----------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence 2233444454 466667665333 555543 356799999988766 6655 39999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe----EEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEee---
Q 006909 320 DDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDF--- 391 (626)
Q Consensus 320 ~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~--- 391 (626)
++++|++||.||-|.+||+.... +.....+...|.++.|..++ +.|.+-+..++..+|+++.+.........
T Consensus 177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~ 256 (376)
T KOG1188|consen 177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVS 256 (376)
T ss_pred CCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccch
Confidence 99999999999999999997642 45567788889999999887 56888899999999999877643221000
Q ss_pred -cc-ccccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEeCC--------cceeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909 392 -HD-RKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGV--------DVIHKFKGLPKSGSQMSASFTTTGKHIISI 460 (626)
Q Consensus 392 -~~-~~~~~~~~i~~l~~s~~~~~~l~~~s~-dg~i~iwd~~--------~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~ 460 (626)
.. +.......+... .+|.+...+++++. -++..++-.. +....+.+ +|..-|.++.|...+.++.||
T Consensus 257 ~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~TG 334 (376)
T KOG1188|consen 257 ADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYTG 334 (376)
T ss_pred hhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeecc
Confidence 00 000011122222 23433345555544 5666665422 22233332 266678889998899999999
Q ss_pred eCCccEEEEECCC
Q 006909 461 GDDCRVYVWNYDE 473 (626)
Q Consensus 461 s~dg~I~iwd~~~ 473 (626)
++||.+.+|..+.
T Consensus 335 GEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 335 GEDGLLQAWKVED 347 (376)
T ss_pred CCCceEEEEecCC
Confidence 9999999999744
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6e-16 Score=163.03 Aligned_cols=284 Identities=15% Similarity=0.166 Sum_probs=193.7
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
.+..+.-..+.|+|-...++++...-.|+|||.+.++..
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l----------------------------------------- 1099 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL----------------------------------------- 1099 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCcee-----------------------------------------
Confidence 344556778999999999999987788999999875431
Q ss_pred CCCceeec---cCccceEEEEEcCC---CeEEEEeCCCcEEEeccC-C----CeeeEeec--------CCCCeEEEEEee
Q 006909 258 ESPLQELH---GHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVG-C----NQCLNVFD--------HHNYVTCVQFNP 318 (626)
Q Consensus 258 ~~~~~~~~---~h~~~V~~l~~s~~---~~l~s~s~d~~v~iwd~~-~----~~~~~~~~--------~~~~v~~~~~~p 318 (626)
..+. .....|+.+.+-++ .++++|+.||.|+||+-- . .+.+..+. ..+.-.-+.|..
T Consensus 1100 ----~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ 1175 (1387)
T KOG1517|consen 1100 ----NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ 1175 (1387)
T ss_pred ----ccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh
Confidence 1111 23457888888653 289999999999999642 2 22332221 111124567877
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEec--cCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc
Q 006909 319 IDDNYFISGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 395 (626)
Q Consensus 319 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~--~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 395 (626)
...+|++++.-..|+|||.....++.-. +....|++++-+. .|+.+++|..||.+++||.+.......... .
T Consensus 1176 -~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~----~ 1250 (1387)
T KOG1517|consen 1176 -QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV----Y 1250 (1387)
T ss_pred -hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee----e
Confidence 4445555555789999999988777633 3445567665433 579999999999999999987654321111 1
Q ss_pred ccCCCC--eEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-ceee-eeecCC---CCCeEEEEEcCCCCEEEEEeCCccEEE
Q 006909 396 KTSGNK--ITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHK-FKGLPK---SGSQMSASFTTTGKHIISIGDDCRVYV 468 (626)
Q Consensus 396 ~~~~~~--i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-~~~~-~~~~~~---~~~v~~~~~sp~g~~l~s~s~dg~I~i 468 (626)
+.|... |..+.+.+.|-..|++|+.+|.|++||++. .... +....| .+..+++..+++...+|+|+. +.|+|
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE
Confidence 222233 999999998866799999999999999875 2222 222112 235899999999999999998 99999
Q ss_pred EECCCCCCC-------CCCccCCccceeeeccCCcEEEEecCCCCcccccc
Q 006909 469 WNYDELCFP-------SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSL 512 (626)
Q Consensus 469 wd~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~ 512 (626)
|++...... .........+|++|||....+|+++.+....+++.
T Consensus 1330 y~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1330 YSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred EecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 999876221 22233344588889988888787755554444443
No 178
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=8.4e-16 Score=146.39 Aligned_cols=287 Identities=17% Similarity=0.287 Sum_probs=191.3
Q ss_pred cCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 181 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 181 ~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
..+|.++.|.++.. .||||+.|..|+||.+....... .... -.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-------------~~~~-----------------------V~ 56 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-------------GDMK-----------------------VE 56 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC-------------Ccee-----------------------EE
Confidence 46799999999877 99999999999999987632110 0001 12
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC--------C-----C---eeeEee-cCCCCeEEEEEeeCCC
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--------C-----N---QCLNVF-DHHNYVTCVQFNPIDD 321 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~--------~-----~---~~~~~~-~~~~~v~~~~~~p~~~ 321 (626)
.+..+..|...|+++.|+|+| .|++|+.+|.|.+|... + . ...+.. .|...|..++|+| ++
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~ 135 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DS 135 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CC
Confidence 356778999999999999998 99999999999999765 2 1 111222 3889999999999 99
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEE--eeccc-ccc
Q 006909 322 NYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV--DFHDR-KKT 397 (626)
Q Consensus 322 ~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~--~~~~~-~~~ 397 (626)
+++++++.|..+++||+..+.+.. ..+|...+..++|.|-++++++-+.|...+.+.+...+.....- .+... ...
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 999999999999999999999876 56788999999999999999999999877777766544322210 11100 000
Q ss_pred -------------CCCCeEEEEEcCCCCcEEEEEeC----C-----CcEEEEeCCc---ceeeeeecCCCCCeEEEEEcC
Q 006909 398 -------------SGNKITGIQFSRDESQRIMITSE----D-----SKLRILDGVD---VIHKFKGLPKSGSQMSASFTT 452 (626)
Q Consensus 398 -------------~~~~i~~l~~s~~~~~~l~~~s~----d-----g~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp 452 (626)
.......++|+|+| .++++.+. + ++.++++... +...+.. ...+...+.|+|
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~p 292 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSP 292 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeee
Confidence 11223457789998 56666432 2 2345555332 2222211 223333444333
Q ss_pred ------------------CCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccC
Q 006909 453 ------------------TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 514 (626)
Q Consensus 453 ------------------~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~ 514 (626)
-+-.++.++ .+.|+|||.++.. |. ....-+++ ..+..++|++||..++..+.
T Consensus 293 Vy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~-P~-----~~v~nihy---~~iTDiaws~dg~~l~vSS~ 362 (434)
T KOG1009|consen 293 VYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLE-PL-----AVVDNIHY---SAITDIAWSDDGSVLLVSST 362 (434)
T ss_pred eEEEeccccccccccccccceEEEEee-cceEEEecccccc-ce-----EEEeeeee---eeecceeecCCCcEEEEecc
Confidence 233344554 5689999988741 11 11112233 23667888888888887666
Q ss_pred CCc
Q 006909 515 SSL 517 (626)
Q Consensus 515 ~~~ 517 (626)
|+.
T Consensus 363 DGy 365 (434)
T KOG1009|consen 363 DGF 365 (434)
T ss_pred CCc
Confidence 543
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=4.5e-16 Score=162.03 Aligned_cols=248 Identities=19% Similarity=0.181 Sum_probs=182.8
Q ss_pred ccCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 180 HKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 180 H~~~V~~l~fspd-g~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
-...|+|++|+|. ..+||.|..+|.|.+||+..+..... .
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------------------------------s 281 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---------------------------------------S 281 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---------------------------------------c
Confidence 4678999999995 55888889999999999987432100 0
Q ss_pred CCceeeccCccceEEEEEcCC---CeEEEEeCCCcEEEeccCCCee------eEee-------cCCCCeEEEEEeeCCCC
Q 006909 259 SPLQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQC------LNVF-------DHHNYVTCVQFNPIDDN 322 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~---~~l~s~s~d~~v~iwd~~~~~~------~~~~-------~~~~~v~~~~~~p~~~~ 322 (626)
..-.....|..+++.+.|..+ ..+++++.||.|..|+++.-.. .... .....+++++|.+.+.+
T Consensus 282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~ 361 (555)
T KOG1587|consen 282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN 361 (555)
T ss_pred ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence 011223469999999999754 2699999999999998753322 1111 12346899999998999
Q ss_pred EEEEEeCCCcEEEEeC---CCCe------EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc
Q 006909 323 YFISGSIDGKVRIWGV---CEKR------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 393 (626)
Q Consensus 323 ~l~s~s~dg~v~iwd~---~~~~------~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~ 393 (626)
.|+.|+.+|.|.--.. +... ......|.++|+++.++|-+..++..+.|.+++||.......+......
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~-- 439 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS-- 439 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh--
Confidence 9999999999877333 2222 2245677899999999998877766666999999998733333322221
Q ss_pred ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc----ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909 394 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 469 (626)
Q Consensus 394 ~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iw 469 (626)
+...+++++|||..+..++++..||.|.+||+.. +...... +......+.|+++|+.|++|...|++++|
T Consensus 440 ----~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 440 ----SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred ----ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEE
Confidence 2256999999999888999999999999999752 2222222 34556778888999999999999999999
Q ss_pred ECCCC
Q 006909 470 NYDEL 474 (626)
Q Consensus 470 d~~~~ 474 (626)
++...
T Consensus 514 ~l~~~ 518 (555)
T KOG1587|consen 514 KLSES 518 (555)
T ss_pred EcCch
Confidence 99864
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=4.3e-17 Score=146.55 Aligned_cols=296 Identities=14% Similarity=0.131 Sum_probs=195.3
Q ss_pred CCCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
..|...+.+|.+.|+++.|..+++|++|...|.|++|++.+.+....+. +...|+.+..-| + ..+.+-+.|+.+.+
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEE
Confidence 3466777899999999999999999999999999999999988887776 677899999888 4 77888999999999
Q ss_pred EeCCCCeEEEeccCCCCeEEEEEeeC-----CC----EEEEEecCC-cEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909 336 WGVCEKRVVDWADVRDVISAICYIPD-----GK----GFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 336 wd~~~~~~~~~~~~~~~i~~i~~sp~-----g~----~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
|++..+..+.... -.++++-|.+. ++ .++.-+... .+++-|. +.. ..............+.+++.
T Consensus 82 w~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~--g~~-tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 82 WTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG--GDT-TQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhcc--Ccc-ceeEccCchhccccCceeee
Confidence 9998766554322 33444444432 21 111111100 0111111 111 11111112223344677777
Q ss_pred EEcCC-CC-cEEEEEeCCCcEEEEeCCccee----------eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 406 QFSRD-ES-QRIMITSEDSKLRILDGVDVIH----------KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 406 ~~s~~-~~-~~l~~~s~dg~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
.+..+ ++ -++++|.++|.+.+||+..... ......|..+|.++.|.+.-..=++|+.+..+..|+++.
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 75432 22 3566788899999999875422 222345788999999987666667788888888888875
Q ss_pred CCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCccc
Q 006909 474 LCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG 553 (626)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 553 (626)
....... +.. +.....-+.++.+-||++.+|
T Consensus 237 s~gslq~--------------~~e-----------------------------------~~lknpGv~gvrIRpD~KIlA 267 (323)
T KOG0322|consen 237 STGSLQI--------------RKE-----------------------------------ITLKNPGVSGVRIRPDGKILA 267 (323)
T ss_pred ccCcccc--------------cce-----------------------------------EEecCCCccceEEccCCcEEe
Confidence 3100000 000 001111256677889999999
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceEEEEecCCceEeeeeec
Q 006909 554 SATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHNY 620 (626)
Q Consensus 554 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g~Dg~Irvw~~~ 620 (626)
+|+| |++|+|++-.+.. +.....++.......+|++ +..++|.||.|++|.+|+.|
T Consensus 268 TAGW-D~RiRVyswrtl~---------pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 268 TAGW-DHRIRVYSWRTLN---------PLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKLY 323 (323)
T ss_pred eccc-CCcEEEEEeccCC---------chhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeecC
Confidence 9999 8999999888872 1222334444444567777 67899999999999999987
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.4e-15 Score=158.36 Aligned_cols=340 Identities=17% Similarity=0.232 Sum_probs=225.3
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
.|+-.++|.++||+++++|+|..||.|.+|.--... ...
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-----------------------------------------~~~ 241 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-----------------------------------------DDS 241 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccc-----------------------------------------ccc
Confidence 577889999999999999999999999999643200 012
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
...+.++=|...|++++|+++| +|++|+..|.+.+|.+.+++....-+..++|..+.++| ++++.+....|+.|.+..
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEe
Confidence 2356677799999999999998 99999999999999999998444446889999999999 999999999999999987
Q ss_pred CCCCeEEEe------------ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccc---cccCCCC
Q 006909 338 VCEKRVVDW------------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDR---KKTSGNK 401 (626)
Q Consensus 338 ~~~~~~~~~------------~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~---~~~~~~~ 401 (626)
..+...... ....+-.+.++++|.-+.++..+..|.|.+||+-+.....+ .+..+.. ...+...
T Consensus 321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ 400 (792)
T KOG1963|consen 321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVG 400 (792)
T ss_pred ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEe
Confidence 754332221 11244567889999888899999999999999988776544 1111111 1122346
Q ss_pred eEEEEEcCCCCcEEEEEeC--------CC--cEEEEeCCcceee-----eeecCCCCCeEEEEEc-CCCC-EEEEEeCCc
Q 006909 402 ITGIQFSRDESQRIMITSE--------DS--KLRILDGVDVIHK-----FKGLPKSGSQMSASFT-TTGK-HIISIGDDC 464 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~--------dg--~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~s-p~g~-~l~s~s~dg 464 (626)
++.++.+..| .++++.-. || .+++|--....+. ....+|...+...+|. +... ..++++.||
T Consensus 401 itav~~~~~g-s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg 479 (792)
T KOG1963|consen 401 ITAVARSRFG-SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG 479 (792)
T ss_pred eeeehhhccc-eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC
Confidence 7788888886 68887632 33 5677864322222 2224566655555554 3333 789999999
Q ss_pred cEEEEECCCCCCCCCCccCCccceeeec--cCCcEEEEecCCCCcccccccCCCccccCccccccCCCCc---ccCCCcc
Q 006909 465 RVYVWNYDELCFPSSKQKNSVRSCEHFF--SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPW---IRDSERF 539 (626)
Q Consensus 465 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~--~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~ 539 (626)
.++||-+.+..... .......|.+.+ +.-...+.+|+.||..|+.... ..+.+|+..+...+ .......
T Consensus 480 ~~KiW~~~~~~n~~--k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~----~~Itiwd~~~~~~l~~~~~~~~~~ 553 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIY--KKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFD----DTITIWDYDTKNELLCTEGSRNWP 553 (792)
T ss_pred eEEEEEEecccccC--cCccceEEeeeeccccCcccchhhcCCCcEEEEecC----CEEEEecCCChhhhhccccccccc
Confidence 99999996542221 223344444443 3445667788888877665333 33566666542111 1111112
Q ss_pred cCCccccC----CCCcccccCCCCCCCCCCCcccC
Q 006909 540 SLGSWFSN----DGPCRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 540 ~~~~~~s~----dg~~l~s~~~~d~~i~vwd~~~~ 570 (626)
+..+.|-. ++. +..++. ..+.+|++-..
T Consensus 554 ~~~~~~~~~~~~~~~-~~~~~~--~~l~~WNll~~ 585 (792)
T KOG1963|consen 554 IAELLFTAQTQNDGA-LVHATQ--QRLSVWNLLSM 585 (792)
T ss_pred hHhHhhhcccccccc-eeeccC--ceEehHhhhhh
Confidence 33333322 232 333443 56888988765
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=1e-15 Score=139.63 Aligned_cols=242 Identities=14% Similarity=0.220 Sum_probs=176.3
Q ss_pred cccCcEEEEEEcCCCC-----EEEEEeCCCcEEEEEcCCC--cceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 179 AHKGCIWTLKFSPDGR-----YLASGGEDGVVRIWHVTSV--AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~-----~Latgs~Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
.|.-+++.+.|.|+.. +|||.+. .+|+|.+... ........
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L------------------------------ 141 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVL------------------------------ 141 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhh------------------------------
Confidence 6899999999999863 6777653 6999998741 11100000
Q ss_pred ccccccCCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCee----eEeecCCCCeEEEEEeeCCCCEEE
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC----LNVFDHHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~~p~~~~~l~ 325 (626)
....-..+..++++..|+.- +++.++|-|.+..|||++++.. .+.+.|...|..++|....-+.|+
T Consensus 142 --------~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FA 213 (364)
T KOG0290|consen 142 --------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFA 213 (364)
T ss_pred --------ccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEE
Confidence 00111235679999999853 4899999999999999998733 345579999999999985567899
Q ss_pred EEeCCCcEEEEeCCCCe---EEEeccC-CCCeEEEEEee-CCCEEEEEecC-CcEEEEEcCCCceeeeEEeeccccccCC
Q 006909 326 SGSIDGKVRIWGVCEKR---VVDWADV-RDVISAICYIP-DGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSG 399 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~---~~~~~~~-~~~i~~i~~sp-~g~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 399 (626)
+.+.||.||+||++..+ ++..... ..+...++|++ |-+++|+-..| ..|.+.|++....++.. ...|.
T Consensus 214 SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~------L~~H~ 287 (364)
T KOG0290|consen 214 SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR------LRNHQ 287 (364)
T ss_pred EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh------hhcCc
Confidence 99999999999998754 2222222 56788899988 45677775554 57999999987766543 33456
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-----eeeecCCCCCeEEEEEcC-CCCEEEEEeCCccEE
Q 006909 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----KFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVY 467 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~ 467 (626)
+.|.+++|.|..+..|.+++.|..+.|||+..... .+......+.|+.+.|++ .+.+|+.+.. +.+.
T Consensus 288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kkle 360 (364)
T KOG0290|consen 288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLE 360 (364)
T ss_pred ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-Ceee
Confidence 89999999999889999999999999999864433 111122567899999985 5677777653 3443
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=4.9e-15 Score=150.64 Aligned_cols=281 Identities=12% Similarity=0.164 Sum_probs=174.7
Q ss_pred EEEEeCCCcEEEeccCC-Ce--eeEeecCCCCeEEEEEeeCCCCEEEEEe-CCCcEEEEeCC-CCeEE--EeccCCCCeE
Q 006909 282 LLSCSMDKTVRMWQVGC-NQ--CLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGVC-EKRVV--DWADVRDVIS 354 (626)
Q Consensus 282 l~s~s~d~~v~iwd~~~-~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~v~iwd~~-~~~~~--~~~~~~~~i~ 354 (626)
+++...++.|.+||+.+ +. .+..+.+......++++| ++++|++++ .++.|.+|++. .+.+. ..........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 44557789999999964 33 445555666788899999 999887664 57889999986 34332 2223344577
Q ss_pred EEEEeeCCCEEEEEec-CCcEEEEEcCCCceeeeEEe-eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc
Q 006909 355 AICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVD-FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 432 (626)
Q Consensus 355 ~i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~ 432 (626)
.++++|+++++++++. ++.|.+|++........... ... .....+++++|++...+++...++.|.+||+.+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-----LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-----CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 8999999999888764 78999999974332211111 111 1346778899998544456667799999997642
Q ss_pred ee-------eeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCC
Q 006909 433 IH-------KFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 504 (626)
Q Consensus 433 ~~-------~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~ 504 (626)
.. ..... .......+.|+|+|++++++.. +++|.+|+++...... . . ...+...|
T Consensus 159 g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~----~----~--------~~~~~~~p 221 (330)
T PRK11028 159 GHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI----E----C--------VQTLDMMP 221 (330)
T ss_pred CcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE----E----E--------EEEEecCC
Confidence 11 11111 2345678999999999988876 8999999997420000 0 0 00000000
Q ss_pred CCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHH
Q 006909 505 IGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQ 584 (626)
Q Consensus 505 ~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 584 (626)
.. .........++++|||+++.++...++.|.+|++.... .... ...
T Consensus 222 ~~---------------------------~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~-~~~~-----~~~ 268 (330)
T PRK11028 222 AD---------------------------FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG-SVLS-----FEG 268 (330)
T ss_pred Cc---------------------------CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC-CeEE-----EeE
Confidence 00 00112234577899999888776556789999885431 0000 000
Q ss_pred hhhccCCccccccccccceEEEEecC-CceEeeeee
Q 006909 585 QQCLNNVDDVRAISATWGLVIVTAGC-DGMIKTFHN 619 (626)
Q Consensus 585 ~~~~~~~~~~~~~s~~dg~~ivt~g~-Dg~Irvw~~ 619 (626)
........+...+++ ||++|+++.. +++|.+|+.
T Consensus 269 ~~~~~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 269 HQPTETQPRGFNIDH-SGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEeccccCCceEECC-CCCEEEEEEccCCcEEEEEE
Confidence 000011122345666 7888777665 999999986
No 184
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.5e-16 Score=156.48 Aligned_cols=242 Identities=18% Similarity=0.312 Sum_probs=167.3
Q ss_pred cccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909 167 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 246 (626)
Q Consensus 167 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (626)
.+.++-+.++|.||+|.|+|+.|+.+|.+|++|++|-.+.|||.-.
T Consensus 36 ~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~---------------------------------- 81 (758)
T KOG1310|consen 36 WLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE---------------------------------- 81 (758)
T ss_pred HHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchh----------------------------------
Confidence 4566778889999999999999999999999999999999999875
Q ss_pred eecCCccccccCCCceee-ccCccceEEEEEcCC---CeEEEEeCCCcEEEeccCCC----------eeeEee-cCCCCe
Q 006909 247 VVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCN----------QCLNVF-DHHNYV 311 (626)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s~~---~~l~s~s~d~~v~iwd~~~~----------~~~~~~-~~~~~v 311 (626)
.++++.+ .||...|.++.|-|. ..+++|+.|..|+++|+... .....+ .|...|
T Consensus 82 -----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rV 150 (758)
T KOG1310|consen 82 -----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRV 150 (758)
T ss_pred -----------cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhh
Confidence 3344444 489999999999873 38999999999999999741 122223 388899
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-----------eccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEc
Q 006909 312 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-----------WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKA 379 (626)
Q Consensus 312 ~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-----------~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~ 379 (626)
..++..|..++.|.+++.||+|+-+|++...... ....--...++.++|. ..+|++|+.|-..++||.
T Consensus 151 Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 151 KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 9999999556999999999999999998633211 1122234678899994 568999999999999996
Q ss_pred CCCceeeeEEeeccccccCCCCeEEEE-EcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEE
Q 006909 380 SGNDLKLEKVDFHDRKKTSGNKITGIQ-FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII 458 (626)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~i~~l~-~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 458 (626)
+........-... .........|+. |+|.+ + ...+|.+.. ....++-+.|+|+|.-|+
T Consensus 231 Rr~lks~~s~~~~--~~~pp~~~~cv~yf~p~h---l--kn~~gn~~~--------------~~~~~t~vtfnpNGtElL 289 (758)
T KOG1310|consen 231 RRVLKSFRSDGTM--NTCPPKDCRCVRYFSPGH---L--KNSQGNLDR--------------YITCCTYVTFNPNGTELL 289 (758)
T ss_pred hhhccCCCCCccc--cCCCCcccchhheecCcc---c--cCccccccc--------------ceeeeEEEEECCCCcEEE
Confidence 4322211100000 000011222232 33432 1 111111110 112356688999998776
Q ss_pred EEeCCccEEEEECCCC
Q 006909 459 SIGDDCRVYVWNYDEL 474 (626)
Q Consensus 459 s~s~dg~I~iwd~~~~ 474 (626)
..-..-.|+++|+...
T Consensus 290 vs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 290 VSWGGEHVYLFDVNED 305 (758)
T ss_pred EeeCCeEEEEEeecCC
Confidence 6655668999999876
No 185
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.70 E-value=5.4e-14 Score=147.49 Aligned_cols=249 Identities=27% Similarity=0.468 Sum_probs=189.3
Q ss_pred cccccccccccCcEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 171 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 171 ~~~~~~l~~H~~~V~~l~fspdg~~Latgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
......+.+|...|..++|+|+++++++++. |+.+++|++..
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 187 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT------------------------------------- 187 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-------------------------------------
Confidence 4556677899999999999999999999886 99999999986
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeE-ee-cCCCCeEEEEEeeCCCCEEE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLN-VF-DHHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~~p~~~~~l~ 325 (626)
...+..+.+|...|.+++|+|++ .+++++.|+.|++||...+..+. .+ .|...+ ...|+| ++..++
T Consensus 188 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 257 (466)
T COG2319 188 --------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLA 257 (466)
T ss_pred --------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEE
Confidence 24466677799999999999887 44455999999999988777777 34 366654 338998 778899
Q ss_pred EEeCCCcEEEEeCCCCeE--EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 326 SGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
+++.|+.+++|++..... .....|...+.++.|+|++..+++++.|+.+.+|+........... ...+...+.
T Consensus 258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 332 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-----LKGHEGPVS 332 (466)
T ss_pred EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-----ecccCCceE
Confidence 999999999999986553 3335678899999999988888889999999999887766543322 122334688
Q ss_pred EEEEcCCCCcEEEEE-eCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEE-EeCCccEEEEECCCC
Q 006909 404 GIQFSRDESQRIMIT-SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDEL 474 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s-~s~dg~I~iwd~~~~ 474 (626)
.+.|.+++ ..++.+ ..|+.+.+|+.......... .....+..+.+++ ...++. +..++.+.+|+....
T Consensus 333 ~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 333 SLSFSPDG-SLLVSGGSDDGTIRLWDLRTGKPLKTL-EGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred EEEECCCC-CEEEEeecCCCcEEeeecCCCceeEEe-cCCceEEEEEECC-CCCEEEEecCCCceEEEecccC
Confidence 99994332 345554 68899999997765522222 1222388899988 544444 688999999999876
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=2e-14 Score=146.26 Aligned_cols=248 Identities=13% Similarity=0.207 Sum_probs=160.6
Q ss_pred ccCcEEEEEEcCCCCEEEEEe-CCCcEEEEEcCC-CcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 180 HKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs-~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
+.+....++++|++++|++++ .++.|.+|++.. +...
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~----------------------------------------- 71 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT----------------------------------------- 71 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-----------------------------------------
Confidence 345677899999999887764 578899999863 1110
Q ss_pred CCCceeeccCccceEEEEEcCCC-eEEEEe-CCCcEEEeccCCC-e---eeEeecCCCCeEEEEEeeCCCCEEEEEe-CC
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCN-Q---CLNVFDHHNYVTCVQFNPIDDNYFISGS-ID 330 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s-~d~~v~iwd~~~~-~---~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~d 330 (626)
..... ........++++|++ +|++++ .++.|.+|++.+. . .+..+.+.....+++++| +++++++++ .+
T Consensus 72 --~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~ 147 (330)
T PRK11028 72 --FAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKE 147 (330)
T ss_pred --Eeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCC
Confidence 01111 112245689999988 555554 4889999999642 2 233333445577889999 888876554 56
Q ss_pred CcEEEEeCCC-CeEEE------eccCCCCeEEEEEeeCCCEEEEEec-CCcEEEEEcCCC--ceeee-EEeeccccccCC
Q 006909 331 GKVRIWGVCE-KRVVD------WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGN--DLKLE-KVDFHDRKKTSG 399 (626)
Q Consensus 331 g~v~iwd~~~-~~~~~------~~~~~~~i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~~--~~~~~-~~~~~~~~~~~~ 399 (626)
+.|.+||+.+ +.+.. ..........+.|+|+|++++++.. ++.|.+|++... ..... .+..........
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 8999999976 32211 1122345678999999999988876 899999999742 22111 111111100112
Q ss_pred CCeEEEEEcCCCCcEEEEEe-CCCcEEEEeCCcc--eeeeee-cCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCC
Q 006909 400 NKITGIQFSRDESQRIMITS-EDSKLRILDGVDV--IHKFKG-LPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDE 473 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s-~dg~i~iwd~~~~--~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~ 473 (626)
.....+.++|++ ++++++. .++.|.+|++... ...+.. ..-......+.|+|+|++|+++.. +++|.+|+++.
T Consensus 228 ~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 228 RWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 234468999998 5666664 4789999997422 111111 111234567899999999998775 89999998863
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.69 E-value=2.3e-15 Score=137.08 Aligned_cols=258 Identities=16% Similarity=0.246 Sum_probs=184.0
Q ss_pred ccccccccccCcEEEEEEcCCC-CEEEEEeCC-------CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCC
Q 006909 172 YTSQEIQAHKGCIWTLKFSPDG-RYLASGGED-------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 243 (626)
Q Consensus 172 ~~~~~l~~H~~~V~~l~fspdg-~~Latgs~D-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (626)
.+.+.|..|.+.|+.++-+|-. +.|+|+-.+ ..+.||.+........
T Consensus 54 l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~------------------------- 108 (370)
T KOG1007|consen 54 LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN------------------------- 108 (370)
T ss_pred hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc-------------------------
Confidence 3456677899999999999954 467766442 2467888765211100
Q ss_pred CceeecCCccccccCCCceeec-cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCee-eEee------cCCCCeEEE
Q 006909 244 HVPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-LNVF------DHHNYVTCV 314 (626)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~-~~~~------~~~~~v~~~ 314 (626)
...-+.+..+. .+-+.|.|+.|.|++ .+++-. |..|.+|++..+.. +..+ .+....++-
T Consensus 109 -----------~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg 176 (370)
T KOG1007|consen 109 -----------SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSG 176 (370)
T ss_pred -----------cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceeccc
Confidence 00012233333 455699999999987 555554 88999999987665 3332 245677888
Q ss_pred EEee-CCCCEEEEEeCCCcEEEEeCCCCeEEE--eccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEe
Q 006909 315 QFNP-IDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVD 390 (626)
Q Consensus 315 ~~~p-~~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~ 390 (626)
+|+| .+++.+++.+ |+++..||+++..... ...|...|..+.|+|+-+ +|++++.||.|+|||.+..+.++....
T Consensus 177 ~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 9999 6777777765 7999999999755433 345777899999999865 577889999999999998877665443
Q ss_pred eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-----------------------cee------eeeecCC
Q 006909 391 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-----------------------VIH------KFKGLPK 441 (626)
Q Consensus 391 ~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-----------------------~~~------~~~~~~~ 441 (626)
. |...|.++.|+|.-.+++++++.|..|.+|-... ... .-....|
T Consensus 256 ~------HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh 329 (370)
T KOG1007|consen 256 G------HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH 329 (370)
T ss_pred C------CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence 3 3479999999998778999999999999995210 000 0112347
Q ss_pred CCCeEEEEEcCCCCEE-EEEeCCccEEEEECCC
Q 006909 442 SGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDE 473 (626)
Q Consensus 442 ~~~v~~~~~sp~g~~l-~s~s~dg~I~iwd~~~ 473 (626)
...|.+++||.-..++ |+-+.||.+.|=++..
T Consensus 330 EDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 330 EDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 8899999999877665 5678999999877654
No 188
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=1.2e-15 Score=141.44 Aligned_cols=223 Identities=16% Similarity=0.242 Sum_probs=159.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeec
Q 006909 186 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 265 (626)
Q Consensus 186 ~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (626)
-++|||+|+|+|+++.- .+.|-|..+.+ ++.+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq----------------------------------------------~~qlf 45 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ----------------------------------------------LHQLF 45 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhh----------------------------------------------HHHHH
Confidence 47899999999999865 68788877622 12222
Q ss_pred cCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCC-CEEEEEeCCCcEEEEeCCCC
Q 006909 266 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDD-NYFISGSIDGKVRIWGVCEK 341 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~-~~l~s~s~dg~v~iwd~~~~ 341 (626)
.--..|..+.|..+. .|.....|+.|.+|++...+-...+. ....+.++.|+| +| .+|.+...+-.|.+|.+.+.
T Consensus 46 ~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 46 LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEeccc
Confidence 224567788898776 56677888999999999888887775 667899999999 88 55666777889999999999
Q ss_pred eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909 342 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 342 ~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
......-.+..+..++|+|+|++.+..+.-.....+.+...+ .+.+-++.....-..+++.|+||| ..|
T Consensus 125 ~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~----~W~ll~~f~~dT~DltgieWsPdg-~~l------ 193 (447)
T KOG4497|consen 125 KGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK----AWILLKEFKLDTIDLTGIEWSPDG-NWL------ 193 (447)
T ss_pred eeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH----HHHHHHhcCCCcccccCceECCCC-cEE------
Confidence 888877778888999999999999988765332222222110 111112223334567899999997 444
Q ss_pred CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 422 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 422 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
.+||.--....+.. ...-.+..++|+|.+++|+.|+.|+.++|-+-
T Consensus 194 ---aVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 194 ---AVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred ---EEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhce
Confidence 45663322222222 13356888999999999999999999988654
No 189
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.69 E-value=6.6e-15 Score=136.23 Aligned_cols=276 Identities=14% Similarity=0.165 Sum_probs=185.5
Q ss_pred ceEEEEEcCCC-eEEEEeCCCcEEEeccCCC-------e-------eeEeecCCCCeEEEEEe-------eCCCCEEEEE
Q 006909 270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-------Q-------CLNVFDHHNYVTCVQFN-------PIDDNYFISG 327 (626)
Q Consensus 270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~-------~-------~~~~~~~~~~v~~~~~~-------p~~~~~l~s~ 327 (626)
-...+.|+||| .|++-+.|..+++|++... . ....+.....|...+|- | +.+++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeec
Confidence 34567899999 8999999999999987321 1 11122355667777775 4 77899999
Q ss_pred eCCCcEEEEeCCCCeEEEe---ccCC---CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee--EEeeccccccCC
Q 006909 328 SIDGKVRIWGVCEKRVVDW---ADVR---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--KVDFHDRKKTSG 399 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~~---~~~~---~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~ 399 (626)
+.+.-|++||.-++++... ..|. ....+++|+|||..|++|. ...|++||+........ ....++ +.+..
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~-k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG-KFGQK 207 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcc-ccccc
Confidence 9999999999999887652 2333 3456899999999998875 66999999943322222 121221 33334
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCCCCCCC
Q 006909 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPS 478 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~ 478 (626)
+-|.+++|+|-.+..+++++....+-||.-......+...+|.+.|+.+.|.++|+.|++|+. |-.|..||++....+.
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 778999999998789999999998888765444444444469999999999999999999874 7899999998753332
Q ss_pred CCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccC---CCCcccCCCcccCCccccCCCCccccc
Q 006909 479 SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLE---TAPWIRDSERFSLGSWFSNDGPCRGSA 555 (626)
Q Consensus 479 ~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~s~ 555 (626)
..-...+. .....+-....|.+..|++-. .++.+.+|+.-. .......+...+.++++.|-=.+++++
T Consensus 288 ~~L~rhv~------~TNQRI~FDld~~~~~LasG~---tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 288 YALERHVG------DTNQRILFDLDPKGEILASGD---TDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred hhhhhhcc------CccceEEEecCCCCceeeccC---CCccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence 22111110 011122233344454444322 334466666643 223455566779999999996666666
Q ss_pred CC
Q 006909 556 TW 557 (626)
Q Consensus 556 ~~ 557 (626)
+.
T Consensus 359 sG 360 (406)
T KOG2919|consen 359 SG 360 (406)
T ss_pred cC
Confidence 64
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=5.5e-16 Score=148.79 Aligned_cols=192 Identities=26% Similarity=0.381 Sum_probs=149.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceee
Q 006909 185 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 264 (626)
Q Consensus 185 ~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (626)
.+++|+++|..|++|+.||++|||++.+ ...+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps---------------------------------------------~~t~l~e 182 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS---------------------------------------------MLTILEE 182 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc---------------------------------------------chhhhhh
Confidence 7899999999999999999999999776 2345566
Q ss_pred ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCC---CE--EEEEeCCCcEEE
Q 006909 265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDD---NY--FISGSIDGKVRI 335 (626)
Q Consensus 265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~---~~--l~s~s~dg~v~i 335 (626)
..|...|.++.|+||+ .|++.+.| ..+||++.++.++.... .......+.|+. ++ .+ ++....-+.|+.
T Consensus 183 ~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~ 260 (398)
T KOG0771|consen 183 IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRL 260 (398)
T ss_pred HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeE
Confidence 7899999999999999 88899999 89999999997766553 334566778876 55 33 333344466777
Q ss_pred EeCCC--C----eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 336 WGVCE--K----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 336 wd~~~--~----~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
||+.. + +..+.......|++++.+++|++++.|+.||.|.+|+....+..... +..|...|+.+.|+|
T Consensus 261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v------k~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV------KEAHLGFVTGLTFSP 334 (398)
T ss_pred EEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee------hhhheeeeeeEEEcC
Confidence 76542 1 22233444568999999999999999999999999998876654332 345568999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCC
Q 006909 410 DESQRIMITSEDSKLRILDGV 430 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~ 430 (626)
+. +++++.+.+.++.|..+.
T Consensus 335 ds-r~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 335 DS-RYLASVSSDNEAAVTKLA 354 (398)
T ss_pred Cc-CcccccccCCceeEEEEe
Confidence 95 789999999888887643
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=2e-15 Score=148.17 Aligned_cols=189 Identities=15% Similarity=0.316 Sum_probs=145.7
Q ss_pred CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
+........|.+.|.+-.|+|+| -|++++.||.|++|.-...-.....+...+|.|++|.|...+.+++.+ +.+.|=
T Consensus 94 ~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IK 171 (737)
T KOG1524|consen 94 ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIK 171 (737)
T ss_pred chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEe
Confidence 33445667899999999999999 899999999999998653322222357789999999995555555544 566666
Q ss_pred eCC-CCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 337 GVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 337 d~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
.+. ..+++++..|.+-|.++.|++..+.+++|+.|-..++||..+..+-. ...|..+|++++|.|+ ..+
T Consensus 172 pL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~--------S~~~ey~ITSva~npd--~~~ 241 (737)
T KOG1524|consen 172 PLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT--------SAAEEYAITSVAFNPE--KDY 241 (737)
T ss_pred ecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc--------CChhccceeeeeeccc--cce
Confidence 665 35678899999999999999999999999999999999987654321 2334589999999999 466
Q ss_pred EEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 416 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
+.++. ++++ +. .+..+.|..++||+||..++.|+..|.+.+=.
T Consensus 242 ~v~S~-nt~R----------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 242 LLWSY-NTAR----------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred eeeee-eeee----------ec-CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 66654 2233 22 23678999999999999999999988876643
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=6.3e-15 Score=136.42 Aligned_cols=240 Identities=19% Similarity=0.326 Sum_probs=181.0
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
-..+|+|.+|++|+..+|.+.....|.||....... .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~------------------------------------------w~ 46 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL------------------------------------------WE 46 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC------------------------------------------ce
Confidence 457899999999999999999999999999876321 45
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEecc-CCCeee---EeecCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQCL---NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~-~~~~~~---~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
+.+++..|...|+++.|+|.. .|++|+.|..-+||.. ..+.-. ..+.++..++++.|+| .++.|++|+....|.
T Consensus 47 ~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~is 125 (361)
T KOG1523|consen 47 PAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLIS 125 (361)
T ss_pred eceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEE
Confidence 688999999999999999975 9999999999999998 444332 3346999999999999 999999999999999
Q ss_pred EEeCCCCeEE-----EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee--------EEee---ccccccC
Q 006909 335 IWGVCEKRVV-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--------KVDF---HDRKKTS 398 (626)
Q Consensus 335 iwd~~~~~~~-----~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~--------~~~~---~~~~~~~ 398 (626)
||-.+...-- ....++..|++++|+|++-++++|+.|+.+++|..--....-. .+.+ .......
T Consensus 126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ 205 (361)
T KOG1523|consen 126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS 205 (361)
T ss_pred EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC
Confidence 9988765532 2356678899999999999999999999999997521110000 0000 0011134
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee-eeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909 399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKGLPKSGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
++.+..+.|+|+| ..|+-.+.|+.+.+-|....... .......-+..++.|-.+ +.++.++.|.
T Consensus 206 ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise-~~vv~ag~~c 270 (361)
T KOG1523|consen 206 GGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE-NSVVAAGYDC 270 (361)
T ss_pred CCceeeeEeCCCC-CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC-CceeecCCCC
Confidence 5789999999998 79999999999999996644321 111112356777777544 3455555563
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.68 E-value=9.1e-15 Score=156.70 Aligned_cols=220 Identities=17% Similarity=0.198 Sum_probs=157.4
Q ss_pred eecCCccccccCCCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCC-------CeeeEeec-CCCCeEEEEE
Q 006909 247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGC-------NQCLNVFD-HHNYVTCVQF 316 (626)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~-------~~~~~~~~-~~~~v~~~~~ 316 (626)
+..+..-|...+..+..++.|...|..++.++. .+++|||.||+|++||... .++..++. ....+.++.+
T Consensus 1027 ~~~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1027 VGSPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred cCCCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe
Confidence 344555678888889999999999999999864 3999999999999999842 22333444 5678999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEeCCCCeE-------EEecc--CCCCeEEE-EEee-CCC-EEEEEecCCcEEEEEcCCCce
Q 006909 317 NPIDDNYFISGSIDGKVRIWGVCEKRV-------VDWAD--VRDVISAI-CYIP-DGK-GFIVGSITGTCHFYKASGNDL 384 (626)
Q Consensus 317 ~p~~~~~l~s~s~dg~v~iwd~~~~~~-------~~~~~--~~~~i~~i-~~sp-~g~-~l~~g~~dg~i~i~d~~~~~~ 384 (626)
.+ .++.+|.++.||.|++.++..... ..... ..+.+.++ +|.. .+. .++.++..+.|..||++....
T Consensus 1107 ~~-~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1107 CG-NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred cc-CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 99 999999999999999998865211 11111 12223322 3322 233 688889999999999987654
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCC---CEEEE
Q 006909 385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTG---KHIIS 459 (626)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g---~~l~s 459 (626)
... ... ....+.|++++.+|.+ +++++|+..|.+.+||++-. +.... +++..+++.+..+|.. ...++
T Consensus 1186 ~w~-lk~----~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~-~P~~~~i~~v~~~~~~~~~S~~vs 1258 (1431)
T KOG1240|consen 1186 AWR-LKN----QLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWE-HPARAPIRHVWLCPTYPQESVSVS 1258 (1431)
T ss_pred HHh-hhc----CccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeeccc-CcccCCcceEEeeccCCCCceEEE
Confidence 332 111 1113789999999997 79999999999999998733 33333 3455788888776643 45555
Q ss_pred Ee--CCccEEEEECCCC
Q 006909 460 IG--DDCRVYVWNYDEL 474 (626)
Q Consensus 460 ~s--~dg~I~iwd~~~~ 474 (626)
++ ..+.|.+|++.++
T Consensus 1259 ~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1259 AGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ecccCCCceeeeecccC
Confidence 54 4688999999987
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.5e-15 Score=131.05 Aligned_cols=245 Identities=14% Similarity=0.211 Sum_probs=174.1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
..|.+-+++|.+++|+.|..+|.|-+..+.+....... .....++
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~-----------------------------------~~gk~~i 55 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE-----------------------------------PPGKLKI 55 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC-----------------------------------CCCCcce
Confidence 34777889999999999999999999998763211100 0012345
Q ss_pred eeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCee-------eEee--cC-----CCCeEEEEEeeCCCCEEEEE
Q 006909 262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC-------LNVF--DH-----HNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~-------~~~~--~~-----~~~v~~~~~~p~~~~~l~s~ 327 (626)
...++|.++|+.++|. +..|++|+. |.|+-|..+.... .... .+ -..|+++...| ..+-++++
T Consensus 56 v~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~A 132 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFA 132 (325)
T ss_pred eeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEe
Confidence 5568999999999998 456777765 9999987643211 1111 12 23688999999 66666666
Q ss_pred eCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc---ccc-cCCCCe
Q 006909 328 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD---RKK-TSGNKI 402 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~---~~~-~~~~~i 402 (626)
+.|+.++.||+++|++.. +.+|.+.+.++.--.....+++|+.||++++||.++.+.... +.... ..+ ..+..|
T Consensus 133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~-ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM-IEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE-eccccChhhcCcccCcee
Confidence 689999999999999765 789999999999866566899999999999999998876432 21111 111 124557
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 403 TGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+++-+.| ++++ +....+.+|.++. ...++.. .+++..+.|. .+.+++++..+.|.-|.+...
T Consensus 212 gala~~ed---WlvC-GgGp~lslwhLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 212 GALAVNED---WLVC-GGGPKLSLWHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred EEEeccCc---eEEe-cCCCceeEEeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeeccE
Confidence 77776654 5554 4567899999874 4455544 4667778885 457888888889999998763
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=1.1e-14 Score=151.72 Aligned_cols=246 Identities=15% Similarity=0.116 Sum_probs=173.7
Q ss_pred CccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCee--eE-----eecCCCCeEEEEEeeCCC--CEEEEEeCCCcEEE
Q 006909 267 HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC--LN-----VFDHHNYVTCVQFNPIDD--NYFISGSIDGKVRI 335 (626)
Q Consensus 267 h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~--~~-----~~~~~~~v~~~~~~p~~~--~~l~s~s~dg~v~i 335 (626)
-...|.+++|+|.. +++.|..+|.|.+||+..+.. .. ...|..+++.+.|.. +. .-|++++.||.|..
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICS 319 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcEee
Confidence 46789999999864 889999999999999987655 22 224889999999976 43 34999999999999
Q ss_pred EeCCCCeE------EEec-------cCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceee-eEEeeccccccCCC
Q 006909 336 WGVCEKRV------VDWA-------DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDRKKTSGN 400 (626)
Q Consensus 336 wd~~~~~~------~~~~-------~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~ 400 (626)
|+++.-.. .... .....++++.|.+ +-..+++|+.+|.|.--+-.+..... .....+.....|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 98764221 1111 2234688999988 55789999999998875544444333 12233434556779
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCC-EEEEEeCCccEEEEECCCCC-CC
Q 006909 401 KITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELC-FP 477 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s~dg~I~iwd~~~~~-~~ 477 (626)
+|+.+.++|-+...+++++ |.+++||... .....+....+...+++++|||... .++++..||.|.+||+.... .|
T Consensus 400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred ceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 9999999999866666666 9999999966 4444444444667799999999875 45666779999999997651 12
Q ss_pred CCC--ccCCccceeeeccCCcEEEEecCCCCcccccccC
Q 006909 478 SSK--QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCS 514 (626)
Q Consensus 478 ~~~--~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~ 514 (626)
... ....+..+..+++.|..++++-..+...++.+..
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 111 1244555666777788888876666556555543
No 196
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=4.4e-15 Score=135.32 Aligned_cols=219 Identities=18% Similarity=0.273 Sum_probs=162.6
Q ss_pred ccccccc-cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 172 YTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 172 ~~~~~l~-~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
.+...|. .|-+.|.|+.|.|++..||+-. |..|.+|++.+......
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~va-------------------------------- 159 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVA-------------------------------- 159 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhe--------------------------------
Confidence 3334443 5667999999999999999876 78899999987432110
Q ss_pred CccccccCCCceeeccCccceEEEEEcC--CCeEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEE
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFIS 326 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s 326 (626)
.-+...-.+|....++-+|+| ++.-+....|+++..||+++..+...+. |...|..+.|+|....+|++
T Consensus 160 -------ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt 232 (370)
T KOG1007|consen 160 -------EVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVT 232 (370)
T ss_pred -------eecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEE
Confidence 000111123667778889998 4555556678999999999988888774 88899999999966778999
Q ss_pred EeCCCcEEEEeCCCC--eEEEeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceeee----------------
Q 006909 327 GSIDGKVRIWGVCEK--RVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE---------------- 387 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~~---------------- 387 (626)
|+.||.|++||.+.- .+....+|...|.++.|+|. .+++++|+.|..+.+|....-.....
T Consensus 233 ~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse 312 (370)
T KOG1007|consen 233 CGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE 312 (370)
T ss_pred cCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhH
Confidence 999999999999864 35567899999999999995 56788899999999987643221100
Q ss_pred -E-Eeecc----ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 006909 388 -K-VDFHD----RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 430 (626)
Q Consensus 388 -~-~~~~~----~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~ 430 (626)
. ..+.. ....|...|.+++|+.-.+-.+++-+.||.+.|=.+.
T Consensus 313 er~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 313 ERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred HhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0 00111 2334678999999998888889999999999886643
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=4.1e-14 Score=151.75 Aligned_cols=263 Identities=11% Similarity=0.173 Sum_probs=176.4
Q ss_pred ccccccccccccCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
.-.+...|..|...|..++.++.. .+++|||.||+|++|+.........
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~------------------------------ 1086 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG------------------------------ 1086 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc------------------------------
Confidence 344566788899999999988765 8999999999999999876221000
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe-------eeEeec--CCC-CeEEEEEe
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------CLNVFD--HHN-YVTCVQFN 317 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~-------~~~~~~--~~~-~v~~~~~~ 317 (626)
......++..-...+.++...+.+ .+|.++.||.|++.+++... +.+... ..+ .|..-+|.
T Consensus 1087 --------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~ 1158 (1431)
T KOG1240|consen 1087 --------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFT 1158 (1431)
T ss_pred --------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccc
Confidence 011123333346778888888776 89999999999999987521 111111 222 33344454
Q ss_pred eCCCC-EEEEEeCCCcEEEEeCCCCeEE---EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecc
Q 006909 318 PIDDN-YFISGSIDGKVRIWGVCEKRVV---DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 393 (626)
Q Consensus 318 p~~~~-~l~s~s~dg~v~iwd~~~~~~~---~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~ 393 (626)
..... .++.+..-+.|..||++..... +.....+.|++++.+|.+.++++|+..|.+.+||++-.... ..+....
T Consensus 1159 ~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i-~sw~~P~ 1237 (1431)
T KOG1240|consen 1159 AIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI-LSWEHPA 1237 (1431)
T ss_pred ccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee-ecccCcc
Confidence 43444 6777888899999999875533 33445678999999999999999999999999999865443 2333332
Q ss_pred ccccCCCCeEEEEEcCCCC--cEEE-EEe-CCCcEEEEeCCcceeeeeec-------------------CCCCCeEEEEE
Q 006909 394 RKKTSGNKITGIQFSRDES--QRIM-ITS-EDSKLRILDGVDVIHKFKGL-------------------PKSGSQMSASF 450 (626)
Q Consensus 394 ~~~~~~~~i~~l~~s~~~~--~~l~-~~s-~dg~i~iwd~~~~~~~~~~~-------------------~~~~~v~~~~~ 450 (626)
+ .+|+.+..+|-.+ ...+ +++ ..+.|.+|+..+........ ++.-.....++
T Consensus 1238 ~-----~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~ 1312 (1431)
T KOG1240|consen 1238 R-----APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV 1312 (1431)
T ss_pred c-----CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeec
Confidence 2 6777777665432 3444 444 57899999976443322211 11112233444
Q ss_pred cCCCCEEEEEeCCccEEEEECCCCCC
Q 006909 451 TTTGKHIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 451 sp~g~~l~s~s~dg~I~iwd~~~~~~ 476 (626)
..-+.++++|+.|..|+.||......
T Consensus 1313 ~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1313 CEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred ccCCceeeecCCccceeeccCCCccc
Confidence 45567899999999999999987643
No 198
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=9.7e-15 Score=144.79 Aligned_cols=295 Identities=17% Similarity=0.189 Sum_probs=194.3
Q ss_pred ccccccccccccccccccccCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcceeeeecCCCC-CccCCCCCeeeecC
Q 006909 162 KKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGG-FGSNAKEGKIKFGK 239 (626)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L-atgs~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 239 (626)
++..+.+....+.|.| +|...-+.|..+|||+|+ |||..--.|++||+.+............. ......++
T Consensus 33 kkd~~~~~rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD------ 105 (703)
T KOG2321|consen 33 KKDVDYRQRIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDD------ 105 (703)
T ss_pred hhchHHHHHHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccc------
Confidence 3334444555666666 689999999999999965 56666778999999875443221111100 00000000
Q ss_pred CCCCCceeecCCcccccc--CCCceeeccCccceEEEEEc-CCCeEEEEeCCCcEEEeccCCCeeeEeecC-CCCeEEEE
Q 006909 240 KKSSHVPVVIPDEVFQIE--ESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQ 315 (626)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~V~~l~~s-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~ 315 (626)
-+..+..-.+....+. ......+ --...-.+++++ |+--|+.++....|.-++++.|+.+..|.. ...++++.
T Consensus 106 --~SK~v~L~~DR~IefHak~G~hy~~-RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~ 182 (703)
T KOG2321|consen 106 --YSKSVFLQNDRTIEFHAKYGRHYRT-RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS 182 (703)
T ss_pred --hhhheEeecCceeeehhhcCeeeee-ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence 0000000000000000 0000000 001223455555 333455555666799999999999999974 47999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc-------CC-----CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc
Q 006909 316 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-------VR-----DVISAICYIPDGKGFIVGSITGTCHFYKASGND 383 (626)
Q Consensus 316 ~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-------~~-----~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~ 383 (626)
.++ ...+|++|+.+|.|..||.+....+.... +. ..|+++.|+.+|-.+++|+.+|.+.|||++...
T Consensus 183 in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 183 INE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred ecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 999 88899999999999999999876544222 22 239999999999999999999999999999877
Q ss_pred eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909 384 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
.....-. ....+|..+.|.+.+.+--+++.....++|||-.+....... .....++.+|+-|++.+++++-++
T Consensus 262 pl~~kdh------~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asi-Ept~~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 262 PLLVKDH------GYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASI-EPTSDLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred ceeeccc------CCccceeeecccccCCCceEEecchHHhhhcccccCCceeec-cccCCcCceeeecCCceEEEecCC
Confidence 6543221 123789999998775455566666789999996554433333 245669999999999999999999
Q ss_pred ccEEEEECCCC
Q 006909 464 CRVYVWNYDEL 474 (626)
Q Consensus 464 g~I~iwd~~~~ 474 (626)
+.+..|-+...
T Consensus 335 ~~m~~yyiP~L 345 (703)
T KOG2321|consen 335 SKMHTYYIPSL 345 (703)
T ss_pred CcceeEEcccc
Confidence 98888877654
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.7e-14 Score=132.60 Aligned_cols=273 Identities=17% Similarity=0.216 Sum_probs=182.3
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
.-.+..++|++.-..+|++..|-+|+||+-... .
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst---------------------------------------------~- 131 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST---------------------------------------------C- 131 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC---------------------------------------------C-
Confidence 345788999987778899999999999987641 1
Q ss_pred ceeec-cCccceEEEEEcCCC--eEEEEeCCCcEEEeccCC----Ce--------eeEeec--CCCCeEEEEEeeCCCCE
Q 006909 261 LQELH-GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC----NQ--------CLNVFD--HHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 261 ~~~~~-~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~----~~--------~~~~~~--~~~~v~~~~~~p~~~~~ 323 (626)
...++ .....|+|++|-|.+ .|+.|+.. -|.+|.... +. +...++ .+.+|++++|++ ++..
T Consensus 132 pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~ 209 (445)
T KOG2139|consen 132 PTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTI 209 (445)
T ss_pred CceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCE
Confidence 11121 235689999999965 67777765 499996532 11 112222 336899999999 9999
Q ss_pred EEEEeCC-CcEEEEeCCCCeEEEec-cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 324 FISGSID-GKVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 324 l~s~s~d-g~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
+++++.+ ..|.|||..++..+.+. ...+.++-+.|+|||.+|.+++-|+..++|.....-. .+.+... .+.
T Consensus 210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-~erw~lg------sgr 282 (445)
T KOG2139|consen 210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-KERWILG------SGR 282 (445)
T ss_pred EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccce-ecceecc------CCc
Confidence 9998864 67999999998877766 4557788999999999999999999999996543222 1122221 258
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEe--CCcce--------eee--------eecC----CCCCeEEEEEcCCCCEEEE
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILD--GVDVI--------HKF--------KGLP----KSGSQMSASFTTTGKHIIS 459 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd--~~~~~--------~~~--------~~~~----~~~~v~~~~~sp~g~~l~s 459 (626)
|...+|+|+|..+|++.+....++-.. .+... ... .... -.+.+.+++|.|.|.+|++
T Consensus 283 vqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 283 VQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred eeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence 999999999976677766655444322 11000 000 0001 2457789999999999998
Q ss_pred EeCC--------ccEEEEECCCCCCCC-C--C-ccCCccceeeecc---CCcEEEEecCCCCcc
Q 006909 460 IGDD--------CRVYVWNYDELCFPS-S--K-QKNSVRSCEHFFS---EGVSVAVQWPGIGTE 508 (626)
Q Consensus 460 ~s~d--------g~I~iwd~~~~~~~~-~--~-~~~~~~~~~~~~~---~g~~~av~~s~~~~~ 508 (626)
.-.. ..|.+||........ . . -.......+.|+| +|..+.++|+-+...
T Consensus 363 ~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq 426 (445)
T KOG2139|consen 363 IFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQ 426 (445)
T ss_pred EEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceE
Confidence 6543 346777776541110 0 0 1111133445554 788999999876544
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=3.5e-15 Score=149.15 Aligned_cols=207 Identities=18% Similarity=0.296 Sum_probs=155.4
Q ss_pred ccCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 180 HKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 180 H~~~V~~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
....|+.+.|.| |...||.+++||.|++|.+..+... ....
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~--------------------------------------e~~~ 667 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP--------------------------------------ENEM 667 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCC--------------------------------------cccC
Confidence 456799999999 6679999999999999999864221 1125
Q ss_pred CCceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
.+...+.+|...|+.+.|+|= +.|+++++|.+|++||+.++.....+ +|.+.|..++|+| +|+.+++.+.||+|++
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRV 746 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEE
Confidence 677889999999999999984 58999999999999999998876666 6999999999999 9999999999999999
Q ss_pred EeCCCCeEEEecc---CCCCeEEEEEeeCCCEEEEEecCC----cEEEEEcCCCce-eeeEEeeccccccCCCCeEEEEE
Q 006909 336 WGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDL-KLEKVDFHDRKKTSGNKITGIQF 407 (626)
Q Consensus 336 wd~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~~g~~dg----~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~ 407 (626)
|..++++.-...+ ....--.|.|.-+|+++++.+.|. .|.+||..+-.. .+....+... ..+.--.+
T Consensus 747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva-----ps~LvP~Y 821 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA-----PSPLVPHY 821 (1012)
T ss_pred eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc-----Cccccccc
Confidence 9988765332111 123344677888999999887764 688888765442 1111111100 11222235
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCC
Q 006909 408 SRDESQRIMITSEDSKLRILDGV 430 (626)
Q Consensus 408 s~~~~~~l~~~s~dg~i~iwd~~ 430 (626)
.+|.+.++++|-.|..|.+|.+.
T Consensus 822 D~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 822 DYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cCCCceEEEecCCCceEEEEEec
Confidence 56665788899999999999864
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=1.8e-13 Score=129.25 Aligned_cols=235 Identities=11% Similarity=0.177 Sum_probs=174.0
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
...+..+.|..+...|..|+.|| -++|+......
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k--------------------------------------------- 38 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK--------------------------------------------- 38 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH---------------------------------------------
Confidence 44678888999999999999999 68888765211
Q ss_pred ceeeccCccceEEEEEcCCCeEEEEeCC--CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909 261 LQELHGHKGDVLDLAWSNSNYLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~~l~s~s~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~ 338 (626)
..........|.-+-|+. .+++..+.+ ..+++.++..+..+..+....+|.++.++. +.|+++-. ..|+|||+
T Consensus 39 ~~~~~~~~~~IvEmLFSS-SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr---~RLvV~Le-e~IyIydI 113 (391)
T KOG2110|consen 39 CFSKDTEGVSIVEMLFSS-SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR---KRLVVCLE-ESIYIYDI 113 (391)
T ss_pred hhcccCCCeEEEEeeccc-ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc---ceEEEEEc-ccEEEEec
Confidence 000011123455556654 344444434 459999999999999998999999999964 55665554 44999999
Q ss_pred CCCeEEEec----cCCCCeEEEEEeeCCCEEEEE--ecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 339 CEKRVVDWA----DVRDVISAICYIPDGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 339 ~~~~~~~~~----~~~~~i~~i~~sp~g~~l~~g--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
++.+++... .+...+.++++++.+.+++.- ...|.|.+||+.+-+... .+. .|.+.+.+++|+++|
T Consensus 114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~-~I~------aH~~~lAalafs~~G- 185 (391)
T KOG2110|consen 114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN-TIN------AHKGPLAALAFSPDG- 185 (391)
T ss_pred ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee-EEE------ecCCceeEEEECCCC-
Confidence 998877633 445567777777777788863 346899999998765432 333 345899999999998
Q ss_pred cEEEEEeCCCc-EEEEeCCcceeeeeecC--CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 413 QRIMITSEDSK-LRILDGVDVIHKFKGLP--KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 413 ~~l~~~s~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+||++++.|+ |||+.+.+....++... ....|.+++|+|++++|++.|..++|+||.++..
T Consensus 186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 79999999986 68999887666555432 2456889999999999999999999999999875
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=4.8e-13 Score=124.09 Aligned_cols=277 Identities=13% Similarity=0.238 Sum_probs=180.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 263 (626)
Q Consensus 184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (626)
..+++|+.|...++.|.++| .+||+++..+... ...
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~-------------------------------------------~r~ 43 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA-------------------------------------------SRQ 43 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhh-------------------------------------------hhc
Confidence 44599999999999998888 8999987522110 000
Q ss_pred eccCccceEEEEEcCCCeE-EEEeCC------CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 264 LHGHKGDVLDLAWSNSNYL-LSCSMD------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~~~l-~s~s~d------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
+..-.-.+..+-|- .++| +.|+.+ ..|.|||=....++..+....+|.++.+.+ +.+++.- .+.|+||
T Consensus 44 ~~~~G~~~veMLfR-~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvvl-~~~I~Vy 118 (346)
T KOG2111|consen 44 FIDGGFKIVEMLFR-SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVVL-ENKIYVY 118 (346)
T ss_pred cccCchhhhhHhhh-hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEEe-cCeEEEE
Confidence 00000111122221 2322 233333 469999988889999999999999999975 5555554 5789999
Q ss_pred eCCC-CeEEE---eccCCCCeEEEEEeeCCCEEEE-EecCCcEEEEEcCCCcee-eeEEeeccccccCCCCeEEEEEcCC
Q 006909 337 GVCE-KRVVD---WADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 337 d~~~-~~~~~---~~~~~~~i~~i~~sp~g~~l~~-g~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
.... -+... .........+++-+.+..+||. |..-|.|+|-|+...... ...+ .+|...|.|++++.+
T Consensus 119 tF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I------~AH~s~Iacv~Ln~~ 192 (346)
T KOG2111|consen 119 TFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII------NAHDSDIACVALNLQ 192 (346)
T ss_pred EcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE------EcccCceeEEEEcCC
Confidence 8863 22222 2222333433333223334444 556799999999766542 2223 344589999999999
Q ss_pred CCcEEEEEeCCCc-EEEEeCCccee--eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCC--------
Q 006909 411 ESQRIMITSEDSK-LRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-------- 479 (626)
Q Consensus 411 ~~~~l~~~s~dg~-i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~-------- 479 (626)
| .++|++|..|+ |||||..+... .++.-...+.|.+++|||++.+|+++|+-|+|+||.+........
T Consensus 193 G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~ 271 (346)
T KOG2111|consen 193 G-TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFK 271 (346)
T ss_pred c-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccccccccc
Confidence 8 79999999996 79999875443 444334567899999999999999999999999999986422211
Q ss_pred -----CccCCccceeeec-cCCcEEEEecCCCCcccccccCCC
Q 006909 480 -----KQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSSS 516 (626)
Q Consensus 480 -----~~~~~~~~~~~~~-~~g~~~av~~s~~~~~l~~~~~~~ 516 (626)
+...+..+...|+ |.|....++|..+...+..++.|+
T Consensus 272 ~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dg 314 (346)
T KOG2111|consen 272 RLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADG 314 (346)
T ss_pred ccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCC
Confidence 1112234455554 567777888887755444444443
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.3e-14 Score=149.18 Aligned_cols=198 Identities=17% Similarity=0.146 Sum_probs=138.1
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeCC---CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe-CCCcEEE
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRI 335 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~v~i 335 (626)
.+.+..|...+...+|+|+| .|+.++.+ ..|++||+.+++.............++|+| +++.|+.++ .+|.+.|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEE
Confidence 34566788889999999998 67766543 369999998876543333333445789999 999888764 6776554
Q ss_pred --EeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 336 --WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 336 --wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
||+.++....+..+...+....|+|||+.|+..+ .+|...+|++.........+ .. .. ....|+|+|
T Consensus 275 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~----~~--~~~~~SpDG- 344 (429)
T PRK01742 275 YVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GG----RG--YSAQISADG- 344 (429)
T ss_pred EEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cC----CC--CCccCCCCC-
Confidence 5777787777777777888999999999877655 57888888875433222221 11 12 357899998
Q ss_pred cEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 413 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 413 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
++|+.++.++ +.+||+.+......... .....+.|+|+|++|+.++.++.+.+|.+.
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 5777666654 56689765432221111 123567899999999999999988888764
No 204
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=4.2e-15 Score=147.40 Aligned_cols=225 Identities=19% Similarity=0.237 Sum_probs=159.6
Q ss_pred cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceee
Q 006909 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 248 (626)
Q Consensus 169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (626)
..+....+|++|.++|.|+++++++.++.+||.||+|+.|++....- ++...
T Consensus 332 ~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d------p~ds~---------------------- 383 (577)
T KOG0642|consen 332 KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD------PDDSY---------------------- 383 (577)
T ss_pred cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC------ccccc----------------------
Confidence 34455678899999999999999999999999999999998763100 00000
Q ss_pred cCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEE
Q 006909 249 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYF 324 (626)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l 324 (626)
+ .......+.||++.|+.+++|+.. .|++|+.||+|++|+...... .+|. ..+....+.+-.....+.
T Consensus 384 ------d-p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~ 455 (577)
T KOG0642|consen 384 ------D-PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHS 455 (577)
T ss_pred ------C-cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhh
Confidence 0 012346788999999999999865 899999999999999977666 4453 334556666654122333
Q ss_pred EEEeCCCcEEEEeCCCCeEEEecc--------CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc
Q 006909 325 ISGSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 396 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~~~~~~~~~~--------~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 396 (626)
++...-+.--++++.......+.. ....+.-+.++|.+...+++..|+.|+++|..++...... .
T Consensus 456 ~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~-------~ 528 (577)
T KOG0642|consen 456 LASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM-------V 528 (577)
T ss_pred hhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe-------e
Confidence 333333333344444333222221 1245778889999999999999999999999988765432 2
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeee
Q 006909 397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK 437 (626)
Q Consensus 397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 437 (626)
.|...++++++.|+| -+|++++.|+.+++|.+........
T Consensus 529 a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 529 AHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred eccceecceeecCCC-ceEEeecCCceeehhhccchheeec
Confidence 334789999999998 6999999999999998765444433
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=1.1e-13 Score=128.28 Aligned_cols=207 Identities=15% Similarity=0.205 Sum_probs=162.6
Q ss_pred eeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCe---eeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 263 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~---~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
.+.--..+|+|.+|++++ .++.+.....|.||.....+ ...++ .|...|+++.|+| ..+.|++++.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence 344456799999999998 88888888899999987665 34445 3889999999999 899999999999999999
Q ss_pred CCCCe----EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909 338 VCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 338 ~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
...+. ...+..+...++++.|+|.++.|++|+....|.+|-++...--.. ....++.....|+++.|+|++ -
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV---sKhikkPirStv~sldWhpnn-V 159 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV---SKHIKKPIRSTVTSLDWHPNN-V 159 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh---hhhhCCccccceeeeeccCCc-c
Confidence 84432 345678889999999999999999999999999998765432110 001122334789999999997 7
Q ss_pred EEEEEeCCCcEEEEeCC-----c-------------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 414 RIMITSEDSKLRILDGV-----D-------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 414 ~l~~~s~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++++|+.|+..+|+..- + .....+.....+.+..+.|+|+|..|+-.+.|.++.+=|....
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 89999999999999621 0 0011111135678999999999999999999999999998876
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4e-15 Score=146.53 Aligned_cols=241 Identities=18% Similarity=0.240 Sum_probs=172.0
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeCC-CCEEEEEeCCCcEEE
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPID-DNYFISGSIDGKVRI 335 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~~-~~~l~s~s~dg~v~i 335 (626)
...++.||++.|+++.|+.+| +|++||.|-.+.|||.-..+.+..+ +|...|.++.|-|.. ..++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 356789999999999999998 9999999999999999988888877 499999999999954 457889999999999
Q ss_pred EeCCCCe-----------EEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccc---cccCCC
Q 006909 336 WGVCEKR-----------VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKTSGN 400 (626)
Q Consensus 336 wd~~~~~-----------~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~ 400 (626)
+|+...+ ...+..|...|..++..|++ +.+.+++.||+|+-||++....-......+.. ....--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9997421 22356778889999999988 88999999999999999864321110000000 000013
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCC-----CeEEE-EEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 401 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSG-----SQMSA-SFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~-~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
...++..+|..+.+|++|+.|-..++||.+.....+....... ...++ .|+|.+- ...+|.+.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~~------- 270 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNLD------- 270 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cCcccccc-------
Confidence 4678999999989999999999999999765554444311100 00111 1233221 11112111
Q ss_pred CCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCc
Q 006909 475 CFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSL 517 (626)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~ 517 (626)
+.-...+.+.|+|+|.-+.+.|+....+++.+..+..
T Consensus 271 ------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 271 ------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred ------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 1112345678999999999999999999998877643
No 207
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=7.2e-14 Score=147.66 Aligned_cols=255 Identities=21% Similarity=0.297 Sum_probs=176.4
Q ss_pred cCcEEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 181 KGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 181 ~~~V~~l~fsp--dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
...|+.|.+-. |..+|++|+.||.|+||+--.... ++.. .+.. .
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~-----------------~~~e---------LVTa--------w 1154 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW-----------------KKPE---------LVTA--------W 1154 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEeccccccc-----------------CCce---------eEEe--------e
Confidence 35688888754 345899999999999997432110 0000 0000 0
Q ss_pred CCcee-eccCccceEEEEEcC-CCeEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 259 SPLQE-LHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 259 ~~~~~-~~~h~~~V~~l~~s~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
..+.. +.+-.+.=.-+.|.. .|+|++++.-..|+|||....++...+. ....|+++.-+-..++.++.|..||.|+
T Consensus 1155 ~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvR 1234 (1387)
T KOG1517|consen 1155 SSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVR 1234 (1387)
T ss_pred ccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceE
Confidence 00111 111111114456764 4688888878999999999888887764 5557888876665789999999999999
Q ss_pred EEeCCCCe----EEEeccCCCC--eEEEEEeeCCCE-EEEEecCCcEEEEEcCCCcee-eeEEeeccccccCCCCeEEEE
Q 006909 335 IWGVCEKR----VVDWADVRDV--ISAICYIPDGKG-FIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 335 iwd~~~~~----~~~~~~~~~~--i~~i~~sp~g~~-l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~i~~l~ 406 (626)
+||.+... +..+..|... |..+.+.+.|-. |++|+.+|.|++||++..... ...+..+.. .++..+++.
T Consensus 1235 vyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~---yGs~lTal~ 1311 (1387)
T KOG1517|consen 1235 VYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE---YGSALTALT 1311 (1387)
T ss_pred EeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc---cCccceeee
Confidence 99987633 3446667666 999999997765 999999999999999985221 112222211 123599999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCC-cceeeeee-----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 407 FSRDESQRIMITSEDSKLRILDGV-DVIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~-----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+++. ..+++|+. +.|+||++. +....++. ....+.+.+++|+|..-++|+|+.|..|.||.....
T Consensus 1312 VH~ha-piiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1312 VHEHA-PIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eccCC-CeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 99986 58888887 999999965 22222221 113457799999999999999999999999988764
No 208
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.3e-13 Score=131.17 Aligned_cols=221 Identities=14% Similarity=0.092 Sum_probs=169.5
Q ss_pred eeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCe----eeEeecCCCCeEEEEEeeCCCCEEEEEeCC--CcEEEE
Q 006909 263 ELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISGSID--GKVRIW 336 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d--g~v~iw 336 (626)
.....+.+|..++.. ++.|++|-.+|.+.+|....+. .+..+.....+..+.-+|....++++|+.. ..+.+|
T Consensus 100 ~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeee
Confidence 334456677777653 5789999999999999987543 233344456677888888677888889988 889999
Q ss_pred eCCCCeEEEe-c-------c--CCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909 337 GVCEKRVVDW-A-------D--VRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 337 d~~~~~~~~~-~-------~--~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 404 (626)
|+.+.+.+-. . + .+-.++++.|-+. ...|++++.-+.+++||.+.++.++..+.+.. .++++
T Consensus 179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E------~~is~ 252 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE------NPISS 252 (412)
T ss_pred ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc------Cccee
Confidence 9988743321 1 1 1234778889887 88999999999999999998888887777664 79999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccC
Q 006909 405 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 483 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 483 (626)
+...|++ +++++|..-+.+..+|++....... .....+.+.++..+|.+++|+++|-|+.|+|+|+++.........+
T Consensus 253 ~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK 331 (412)
T KOG3881|consen 253 TGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK 331 (412)
T ss_pred eeecCCC-cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh
Confidence 9999998 7999999999999999986544333 2346789999999999999999999999999999986444444444
Q ss_pred Cccceeee
Q 006909 484 SVRSCEHF 491 (626)
Q Consensus 484 ~~~~~~~~ 491 (626)
...+++.+
T Consensus 332 s~lt~il~ 339 (412)
T KOG3881|consen 332 SRLTFILL 339 (412)
T ss_pred ccccEEEe
Confidence 44444333
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.61 E-value=2.3e-14 Score=140.85 Aligned_cols=261 Identities=17% Similarity=0.199 Sum_probs=171.2
Q ss_pred cCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCe-EEEEEee------CCCCEEEEEeCCCcEEEEe
Q 006909 266 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYV-TCVQFNP------IDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v-~~~~~~p------~~~~~l~s~s~dg~v~iwd 337 (626)
.|...|.++.|+.+.-++.++.|..+.+|.--+........ ....+ +.+..-+ .....|+.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 46677789999887766666666666666543333222221 11111 1111111 1345788889999999987
Q ss_pred CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909 338 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 417 (626)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~ 417 (626)
-...-......|.+.+.+-.|+|+|..|++++.||.|++|.-.+.-... ......+|.|++|.|+....+++
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRSt--------l~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRST--------VVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHH--------HhhcCceeEEEEECCCCCceEEe
Confidence 6554445577899999999999999999999999999999876542211 11123789999999997655555
Q ss_pred EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcE
Q 006909 418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS 497 (626)
Q Consensus 418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~ 497 (626)
.+ +.+.|=.+......++-..|.+-|.++.|++..+.|++|++|-..+|||-.+......... +-.+
T Consensus 164 ~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~-----------ey~I 230 (737)
T KOG1524|consen 164 QG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAE-----------EYAI 230 (737)
T ss_pred cC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChh-----------ccce
Confidence 44 4555545554445555556999999999999999999999999999999876532222222 2345
Q ss_pred EEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCCCCcccccCCCCCCC
Q 006909 498 VAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKL 562 (626)
Q Consensus 498 ~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i 562 (626)
..++|+|+.. +.+.+-.. ..+..+....+..++||+||..++.++. .|.+
T Consensus 231 TSva~npd~~--~~v~S~nt------------~R~~~p~~GSifnlsWS~DGTQ~a~gt~-~G~v 280 (737)
T KOG1524|consen 231 TSVAFNPEKD--YLLWSYNT------------ARFSSPRVGSIFNLSWSADGTQATCGTS-TGQL 280 (737)
T ss_pred eeeeeccccc--eeeeeeee------------eeecCCCccceEEEEEcCCCceeecccc-CceE
Confidence 6677777722 22222110 0012333445888999999998877766 3443
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=5.8e-14 Score=147.37 Aligned_cols=206 Identities=14% Similarity=0.118 Sum_probs=133.5
Q ss_pred CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC---CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCE
Q 006909 288 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 364 (626)
Q Consensus 288 d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~ 364 (626)
+..|.+||...........+...+...+|+| +++.|+.++.+ ..|++||+.+++...+.........++|+|||+.
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 4789999997665444446778899999999 99999888754 3699999998765544444445567899999998
Q ss_pred EEEEe-cCCcEEEE--EcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeec
Q 006909 365 FIVGS-ITGTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGL 439 (626)
Q Consensus 365 l~~g~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~ 439 (626)
|+.+. .+|.+.|| |+.++.. ..+.. +...+....|+|||..+++++..++...||++. .......
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~--~~lt~------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-- 331 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTP--SQLTS------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-- 331 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCe--Eeecc------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--
Confidence 88765 67876665 5544432 22211 124577899999985445555567888888753 2211111
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcc
Q 006909 440 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTE 508 (626)
Q Consensus 440 ~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~ 508 (626)
.+.. ....|+|+|++|+.++.++ +.+||+.++......... ......|+|+|..++.+...++..
T Consensus 332 ~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s~~g~~~ 396 (429)
T PRK01742 332 GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF-LDESPSISPNGIMIIYSSTQGLGK 396 (429)
T ss_pred cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC-CCCCceECCCCCEEEEEEcCCCce
Confidence 1222 3578999999999887754 666999876322111111 112335666666665554444433
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.6e-14 Score=138.82 Aligned_cols=197 Identities=17% Similarity=0.202 Sum_probs=150.0
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc-
Q 006909 272 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD- 348 (626)
Q Consensus 272 ~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~- 348 (626)
..++|+++| .|++++.||++|||+..+...+... .|...|.++.|+| ++..|++.+.| ..+||+++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 788999986 9999999999999997666555444 6999999999999 99999999999 89999999986554333
Q ss_pred --CCCCeEEEEEeeCC-----CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909 349 --VRDVISAICYIPDG-----KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 349 --~~~~i~~i~~sp~g-----~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
.......+.|+.++ ..++.....+.|+.|++...... ...... ........|++++.+++| ++++.|+.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~-~~~~~~~siSsl~VS~dG-kf~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLR-KKIKRFKSISSLAVSDDG-KFLALGTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchh-hhhhccCcceeEEEcCCC-cEEEEeccC
Confidence 33446677788776 23333444567777776543331 100000 011122589999999998 899999999
Q ss_pred CcEEEEeCCcceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 422 SKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 422 g~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
|.|-|++..+....+. ...|...|+.+.|+|+.+++++.+.|.++.|..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999876554433 355888999999999999999999999999988764
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=9.5e-14 Score=136.88 Aligned_cols=189 Identities=19% Similarity=0.262 Sum_probs=148.1
Q ss_pred CCC-eEEEEeCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-----------
Q 006909 278 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----------- 340 (626)
Q Consensus 278 ~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~----------- 340 (626)
|.+ -|+.+-.-|.|.+.|.......+.+. ....|+|+.|-|.+...|+.+-.+|.+++||..-
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 445 67788888899998887644444342 4568999999998888899999999999997631
Q ss_pred ---Ce---------------EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909 341 ---KR---------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402 (626)
Q Consensus 341 ---~~---------------~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 402 (626)
+. +..+.-....|+.++|+|||++||+.+.||.++|||..+..+... .+.--+..
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~-------mkSYFGGL 335 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV-------MKSYFGGL 335 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH-------HHhhccce
Confidence 00 111222345788999999999999999999999999987665322 12223689
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcC------------------------------
Q 006909 403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT------------------------------ 452 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp------------------------------ 452 (626)
.|++|+||| ++|++|++|.-|.||...+....-.+++|..+|..++|.|
T Consensus 336 LCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~ 414 (636)
T KOG2394|consen 336 LCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRAN 414 (636)
T ss_pred EEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccC
Confidence 999999998 8999999999999999988888888899999999999983
Q ss_pred -C----C-------------CEEEEEeCCccEEEEECCCC
Q 006909 453 -T----G-------------KHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 453 -~----g-------------~~l~s~s~dg~I~iwd~~~~ 474 (626)
+ + -.+.+.+.|-.+.+||+...
T Consensus 415 ~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 415 GTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred CCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 0 0 13667889999999999865
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.2e-12 Score=135.16 Aligned_cols=200 Identities=14% Similarity=0.182 Sum_probs=137.2
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEe---CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE-eCCC--cEE
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCS---MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDG--KVR 334 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s---~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg--~v~ 334 (626)
+.+..+...+...+|+|+| .|+..+ .+..|.+|++.+++..........+..++|+| +++.|+.. +.+| .|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEE
Confidence 4445567789999999998 566443 24579999998887655444445566789999 99888765 4444 589
Q ss_pred EEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-CcEEEE--EcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 335 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 335 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
+||+.+++...+......+....|+|+|+.|+..+.+ +...+| |+.++.. ..+... ........|+|||
T Consensus 271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~lt~~------~~~~~~~~~SpDG 342 (429)
T PRK03629 271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRITWE------GSQNQDADVSSDG 342 (429)
T ss_pred EEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEeecC------CCCccCEEECCCC
Confidence 9999998888777777778899999999988877654 444555 5555432 222222 1345678899998
Q ss_pred CcEEEEEeC-C--CcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEEeCCcc---EEEEECCCC
Q 006909 412 SQRIMITSE-D--SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR---VYVWNYDEL 474 (626)
Q Consensus 412 ~~~l~~~s~-d--g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~---I~iwd~~~~ 474 (626)
++|+..+. + ..|.+||+.... ..+.. ........|+|||++|+.++.++. +++++++..
T Consensus 343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred -CEEEEEEccCCCceEEEEECCCCCeEEeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 45555443 3 358888876432 22221 122346789999999999987764 778888654
No 214
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.3e-12 Score=115.02 Aligned_cols=243 Identities=21% Similarity=0.298 Sum_probs=162.4
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
.++|.++|+.|+|. ..+|++|+ ||.|+=|.......... ....|..
T Consensus 58 eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~-------------------------------~K~lwe~ 103 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLA-------------------------------TKRLWEV 103 (325)
T ss_pred ccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhcc-------------------------------chhhhhh
Confidence 37999999999998 34788876 59999998876322100 0001110
Q ss_pred cCCCceeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 257 EESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
..|.+.-...-..|+++...|. +-++.++.|+.++-||+++|+..+.+. |+++|.++.--. ....+++|+.||++|
T Consensus 104 -~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvR 181 (325)
T KOG0649|consen 104 -KIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVR 181 (325)
T ss_pred -cCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEE
Confidence 0111111122346888888875 467777799999999999999999995 999999998855 567899999999999
Q ss_pred EEeCCCCeEEEeccCC-----------CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 335 IWGVCEKRVVDWADVR-----------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 335 iwd~~~~~~~~~~~~~-----------~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
+||+++++.+...... ..|.+++ -+..++++|+ ...+.+|.++..+... .+.+. .++.
T Consensus 182 vWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t~-vfpip-------a~v~ 250 (325)
T KOG0649|consen 182 VWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSESTC-VFPIP-------ARVH 250 (325)
T ss_pred EEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCceE-EEecc-------ccee
Confidence 9999998877644322 2344554 3455777664 5689999999876533 23333 5678
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC-CCEEEEEeCCccEEEEE
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 470 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd 470 (626)
.+.|..+ .+++++..+.|.-|.+.......... ......+.+|+.. -++|-.++..+.+.|+.
T Consensus 251 ~v~F~~d---~vl~~G~g~~v~~~~l~Gvl~a~ip~-~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 251 LVDFVDD---CVLIGGEGNHVQSYTLNGVLQANIPV-ESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred Eeeeecc---eEEEeccccceeeeeeccEEEEeccC-CccceeeecccCCceEEEEecccceeeeeee
Confidence 8888776 68888888899999876444333221 2223344444322 34555566666666653
No 215
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.54 E-value=1.1e-14 Score=150.03 Aligned_cols=280 Identities=18% Similarity=0.267 Sum_probs=193.1
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
.++.+.||...|+|+.|...| ++++|+.|..|+||..+++.++... +|.+.|+.++.+. ++-+++++|.|..|++|-
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEe
Confidence 456788999999999999888 8999999999999999999999888 5999999999988 788899999999999999
Q ss_pred CCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 338 VCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 338 ~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
+..+..+. +.+|.+.|++++|+|-. +.+.||++++||.+-...... ...........+.++.|...+ ..++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~---prp~~~~~~~~~~s~~~~~~~-~~f~ 332 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV---PRPLKFTEKDLVDSILFENNG-DRFL 332 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccC---CCCCCcccccceeeeeccccc-cccc
Confidence 99988775 67999999999999965 678899999999882211111 011111223667788888887 6899
Q ss_pred EEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC-CCEEEEEeCCccEEEEECCCCCCC-CCCccCCccceeeeccC
Q 006909 417 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFP-SSKQKNSVRSCEHFFSE 494 (626)
Q Consensus 417 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~ 494 (626)
+++.|+.-..|....... +...+.-+.++.+ ..+.+++-.+-.+.+|++.++... ...........+.+||-
T Consensus 333 Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred cccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 999999999887442111 1111111122212 256677777889999999987322 11222233344555655
Q ss_pred CcEEEEecCCCCcccccccCCCccccCccccccCCCC---cccCCCcccCCccccCCCCcccccCCCCCCCCCCCccc
Q 006909 495 GVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP---WIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTI 569 (626)
Q Consensus 495 g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~~ 569 (626)
...++....-| +...+|+.-++.| ...++. -+..-.||+||..++.... -|.+.|.....
T Consensus 407 n~ri~msag~d-------------gst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~-hgql~i~g~gq 469 (1113)
T KOG0644|consen 407 NPRIAMSAGYD-------------GSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDD-HGQLYILGTGQ 469 (1113)
T ss_pred CcHhhhhccCC-------------CceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCC-CCceEEeccCC
Confidence 44444433333 3345555544443 222322 2566789999997765554 46676654443
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.8e-12 Score=136.44 Aligned_cols=202 Identities=18% Similarity=0.220 Sum_probs=138.7
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeCC---CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEeCCC--cE
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG--KV 333 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg--~v 333 (626)
.+.+..|...+.+.+|+|+| .|+.++.+ ..|.+||+.+++............+.+|+| +++.++ +.+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCceE
Confidence 34455677789999999998 67766533 469999998887655444555566889999 888765 455555 59
Q ss_pred EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CCc--EEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
++||+.+++...+..+.......+|+|||+.|+.++. +|. |+++++.++.. ..+...+ .....++|+|+
T Consensus 275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~~lt~~g------~~~~~~~~SpD 346 (433)
T PRK04922 275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--ERLTFQG------NYNARASVSPD 346 (433)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEeecCC------CCccCEEECCC
Confidence 9999999888777766666678999999999887764 444 66666655443 2222222 33456899999
Q ss_pred CCcEEEEEeCC-C--cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC---ccEEEEECCCC
Q 006909 411 ESQRIMITSED-S--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL 474 (626)
Q Consensus 411 ~~~~l~~~s~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d---g~I~iwd~~~~ 474 (626)
| ++|+..+.+ + .|.+||.......... +........|+|||++|+..+.+ +.|+++++.+.
T Consensus 347 G-~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 347 G-KKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred C-CEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8 566555433 2 6899997643322111 22244567899999998877653 46888888653
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=2.8e-14 Score=138.19 Aligned_cols=255 Identities=14% Similarity=0.146 Sum_probs=192.6
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCC----------CCCccCCCCCeeeecCCCCCCceeecC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDD----------GGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
.-.-..+.++.+|++|+.|+.-|.|-.+|+.++...+.....+ ..+.+.+....+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~y-------------- 194 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVY-------------- 194 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEE--------------
Confidence 3346789999999999999999999999999987765543222 2222222222222
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s 328 (626)
+++..+..++-+..| ..|..+.|-|-. +|++++..|.++.-|+.+|+.+..+. ..+.+..+.-+| -+..+-+|.
T Consensus 195 --vYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~Gh 270 (545)
T KOG1272|consen 195 --VYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGH 270 (545)
T ss_pred --EecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcC
Confidence 222235555666544 468899999988 77888999999999999999998886 566888899999 778889999
Q ss_pred CCCcEEEEeCCCCe-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909 329 IDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 407 (626)
Q Consensus 329 ~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 407 (626)
..|+|.+|.....+ ++.+..|.++|.+|++.++|+++++.+.|..++|||+++......... ..+...+++
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--------p~~a~~ls~ 342 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--------PHPASNLSL 342 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--------CCCcccccc
Confidence 99999999988765 557889999999999999999999999999999999998764322111 146778889
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCC-----cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909 408 SRDESQRIMITSEDSKLRILDGV-----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 408 s~~~~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
|..| +++.+....|.||.-. .....+..+...++|..+.|.|-...|-.|...|
T Consensus 343 Sqkg---lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 343 SQKG---LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred cccc---ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 8875 5666777789999621 2233344455567899999999888887776555
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=5.1e-12 Score=119.10 Aligned_cols=257 Identities=14% Similarity=0.272 Sum_probs=167.5
Q ss_pred cCcEEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 181 KGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 181 ~~~V~~l~fspdg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
...|+||+|-|.+ +-|+.|+..| |.||........... ++.+.. ...
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~---------------~~~~s~----------------~~~ 187 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRN---------------IRMMST----------------HHL 187 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccc---------------cccccc----------------cch
Confidence 4579999999965 4788888766 999987641110000 000000 011
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeC-CCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~-d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
.+....|| .+|+++.|.+|| .+++++. |..|.|||..++..+... ...+.++-+.|+| ++++|+.++-|+..++|
T Consensus 188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLW 265 (445)
T ss_pred hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeee
Confidence 23334466 799999999998 7777665 578999999999888776 4566789999999 99999999999999999
Q ss_pred eC-CCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc--eeee----------EEeec-----cccccC
Q 006909 337 GV-CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND--LKLE----------KVDFH-----DRKKTS 398 (626)
Q Consensus 337 d~-~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~--~~~~----------~~~~~-----~~~~~~ 398 (626)
.. ++-....+....+.|...+|+|+|+.|+.... |.-++|.+.-.. .... ...+. .....-
T Consensus 266 ~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~ 344 (445)
T KOG2139|consen 266 QENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLC 344 (445)
T ss_pred hhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccc
Confidence 54 44455566666779999999999998776543 333444442111 1000 00000 011122
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCC--------cEEEEeCCc-ceeeee--ecCCCCCeEEEEEcC---CCCEEEEEeCCc
Q 006909 399 GNKITGIQFSRDESQRIMITSEDS--------KLRILDGVD-VIHKFK--GLPKSGSQMSASFTT---TGKHIISIGDDC 464 (626)
Q Consensus 399 ~~~i~~l~~s~~~~~~l~~~s~dg--------~i~iwd~~~-~~~~~~--~~~~~~~v~~~~~sp---~g~~l~s~s~dg 464 (626)
.+.+.+++|.|.| .++++.-..+ .|.+||++. ....+. +.........++|+| +|.+|..+=.-|
T Consensus 345 cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTG 423 (445)
T KOG2139|consen 345 CGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTG 423 (445)
T ss_pred cCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccC
Confidence 5678899999998 6888776543 366788663 222222 222333456677766 567777777778
Q ss_pred cEEEEECCC
Q 006909 465 RVYVWNYDE 473 (626)
Q Consensus 465 ~I~iwd~~~ 473 (626)
.+.-|++.-
T Consensus 424 riq~ypl~f 432 (445)
T KOG2139|consen 424 RIQRYPLTF 432 (445)
T ss_pred ceEeeeeEE
Confidence 888777653
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2e-12 Score=135.37 Aligned_cols=219 Identities=13% Similarity=0.061 Sum_probs=147.2
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
+.+..+...+.+.+|||||+.||..+. +..|.+|++.++...
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~----------------------------------- 236 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----------------------------------- 236 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------------------------------
Confidence 445567788999999999998887542 356889998764321
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEEE-EeCCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLS-CSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s-~s~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
.+..+.+ .+..++|+|+| .|+. .+.++ .|.+||+.++.......+...+....|+| +++.|+..
T Consensus 237 --------~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~ 304 (429)
T PRK03629 237 --------QVASFPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYT 304 (429)
T ss_pred --------EccCCCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEE
Confidence 1122223 33457999998 5553 34454 48899999887766665666788999999 99988777
Q ss_pred eCC-C--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC---CcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 328 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 328 s~d-g--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
+.+ + .|.++|+.++....+...........|+|+|++++..+.+ ..|.+||+.++.... +. .. ..
T Consensus 305 s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~--Lt--~~-----~~ 375 (429)
T PRK03629 305 SDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV--LT--DT-----FL 375 (429)
T ss_pred eCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE--eC--CC-----CC
Confidence 654 3 4555577777666555555556778999999999886654 358888987765321 11 11 12
Q ss_pred eEEEEEcCCCCcEEEEEeCCCc---EEEEeCCc-ceeeeeecCCCCCeEEEEEcC
Q 006909 402 ITGIQFSRDESQRIMITSEDSK---LRILDGVD-VIHKFKGLPKSGSQMSASFTT 452 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~---i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp 452 (626)
.....|+||| +.|+.++.++. +.++++.. ....+.. +.+.+...+|+|
T Consensus 376 ~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~--~~~~~~~p~Wsp 427 (429)
T PRK03629 376 DETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFKARLPA--TDGQVKFPAWSP 427 (429)
T ss_pred CCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCeEECcc--CCCCcCCcccCC
Confidence 3467899998 67777776654 66677542 2333333 566778888887
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=6e-12 Score=132.62 Aligned_cols=202 Identities=15% Similarity=0.192 Sum_probs=142.4
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeC---CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEeCCCc--E
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSM---DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGK--V 333 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~---d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg~--v 333 (626)
.+.+..|...+...+|+|+| .|+..+. +..|.+||+.+++......+...+...+|+| +++.|+ +.+.++. |
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceE
Confidence 45566788899999999998 6666553 4689999999887765555667778899999 888765 5555554 7
Q ss_pred EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
++||+.++....+..+........|+|||+.|+..+. +| .|+++|+.+.... .+... ...+....|+|+
T Consensus 273 y~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~--~lt~~------~~~~~~~~~Spd 344 (435)
T PRK05137 273 YTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR--RISFG------GGRYSTPVWSPR 344 (435)
T ss_pred EEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE--EeecC------CCcccCeEECCC
Confidence 7889999888877777777788999999999887764 33 6777887665432 22211 144667889999
Q ss_pred CCcEEEEEeCC---CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC------ccEEEEECCCC
Q 006909 411 ESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD------CRVYVWNYDEL 474 (626)
Q Consensus 411 ~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d------g~I~iwd~~~~ 474 (626)
| +.|+..+.+ ..|.+||.......... ....+....|+|||++|+..+.+ ..|+++++.++
T Consensus 345 G-~~ia~~~~~~~~~~i~~~d~~~~~~~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 345 G-DLIAFTKQGGGQFSIGVMKPDGSGERILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred C-CEEEEEEcCCCceEEEEEECCCCceEecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 8 566555433 36788886432222111 22346778999999998876543 25788888664
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6.4e-12 Score=131.76 Aligned_cols=202 Identities=17% Similarity=0.199 Sum_probs=133.9
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeCC---CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEeCCCcEEE
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRI 335 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg~v~i 335 (626)
.+.+..+...+.+.+|+|+| .|+..+.+ ..|.+||+.+++..........+.+.+|+| +++.|+ +.+.+|...|
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~I 266 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQI 266 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceE
Confidence 34455677889999999998 66665543 359999999887765544556677899999 988776 5567776555
Q ss_pred E--eCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 336 W--GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 336 w--d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
| |+.++....+..+........|+|||+.|+..+. +|...+|.+.........+...+ .......|+|+|
T Consensus 267 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g------~~~~~~~~SpDG- 339 (427)
T PRK02889 267 YTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG------SYNTSPRISPDG- 339 (427)
T ss_pred EEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC------CCcCceEECCCC-
Confidence 5 5666666666666666677899999998886654 46666666542221122222222 234467899998
Q ss_pred cEEEEEeCCC---cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc---cEEEEECC
Q 006909 413 QRIMITSEDS---KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYD 472 (626)
Q Consensus 413 ~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg---~I~iwd~~ 472 (626)
++|+..+.++ .|.+||.......... .........|+|||++|+.++.++ .+++.++.
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 5666665543 6999997643322211 223346789999999998887654 35555554
No 222
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2.4e-13 Score=132.62 Aligned_cols=308 Identities=17% Similarity=0.182 Sum_probs=213.9
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeCCC-CEEEEEeCCCcEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDD-NYFISGSIDGKVR 334 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~~~-~~l~s~s~dg~v~ 334 (626)
.....|.+|.+.|+.+.|+..| .|+++|.|..|.+||...+.....| +|...|....|-|..+ ..+++.+.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3456788999999999999887 8999999999999999988888777 4888888888988543 5689999999999
Q ss_pred EEeCCC-Ce---EEEeccCCCCeEEEEEeeCC-CEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 335 IWGVCE-KR---VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 335 iwd~~~-~~---~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
+=.+.. +. ......|.++|.-++.-|+. ..|.+++.|+.+.-+|++......... .........-....++..|
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCC
Confidence 887643 32 23467899999999999964 568899999999999998765433322 1111111112567889999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCccee--------eeee----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCC
Q 006909 410 DESQRIMITSEDSKLRILDGVDVIH--------KFKG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 477 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~~~~~--------~~~~----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 477 (626)
.....+++++.|-.+++||.+.... .+.. ......|++++|+.++.-|.++-.|-.||+++-.-+...
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 9888999999999999999763211 1111 123457899999988777777777888999954332111
Q ss_pred CCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCC--CcccCCccc-cCCCCcccc
Q 006909 478 SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDS--ERFSLGSWF-SNDGPCRGS 554 (626)
Q Consensus 478 ~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~-s~dg~~l~s 554 (626)
... +. +|...++ ..+ ..+| ...|.++.| -|...++++
T Consensus 372 ~p~------~~---s~~~~~~--------k~v-----------------------YKGHrN~~TVKgVNFfGPrsEyVvS 411 (559)
T KOG1334|consen 372 EPD------PS---SPREQYV--------KRV-----------------------YKGHRNSRTVKGVNFFGPRSEYVVS 411 (559)
T ss_pred CCC------CC---cchhhcc--------chh-----------------------hcccccccccceeeeccCccceEEe
Confidence 000 00 0000000 000 0111 112445544 678889999
Q ss_pred cCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccc-cccceEEEEecCCceEeeeee
Q 006909 555 ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAIS-ATWGLVIVTAGCDGMIKTFHN 619 (626)
Q Consensus 555 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~dg~~ivt~g~Dg~Irvw~~ 619 (626)
++. =|.|++|+-.++ +..+........++.+- +++--+|||.|-|.-|+||-=
T Consensus 412 GSD-CGhIFiW~K~t~-----------eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 412 GSD-CGHIFIWDKKTG-----------EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cCc-cceEEEEecchh-----------HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 987 489999999988 55555555444334433 346778999999999999963
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=6.9e-14 Score=135.53 Aligned_cols=227 Identities=12% Similarity=0.123 Sum_probs=182.1
Q ss_pred ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc
Q 006909 270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 348 (626)
Q Consensus 270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 348 (626)
.-..+.++.+| .|+.|+..|.|-.+|..+++....+.....|..+.|.. +.++||++- ...++|||-.+-++. ...
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD~~GtElH-Clk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVAQ-KKYVYVYDNNGTELH-CLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhhh-hceEEEecCCCcEEe-ehh
Confidence 34567888888 89999999999999999999999999889999999998 777777764 578999997655544 444
Q ss_pred CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909 349 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 428 (626)
Q Consensus 349 ~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd 428 (626)
....|..+.|-|..-+|++++..|.++.-|++.+++... .....+.+..++-+|-+ ..+-+|...|+|.+|.
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~-------~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS-------IRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWS 279 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhhHH-------HHccCCccchhhcCCcc-ceEEEcCCCceEEecC
Confidence 556788999999999999999999999999999887543 12223678888889986 6888999999999999
Q ss_pred CCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcc
Q 006909 429 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTE 508 (626)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~ 508 (626)
........+...|.++|.++++.++|+|++|++.|..++|||+.+...+.........+.++++..| .+|+++.+.-..
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~i 358 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQI 358 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCCeeee
Confidence 7755555556669999999999999999999999999999999987655444444455556677655 457776655443
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.51 E-value=9e-12 Score=115.95 Aligned_cols=245 Identities=14% Similarity=0.179 Sum_probs=164.8
Q ss_pred CcEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 182 GCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latg-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
+.|..+.|..|..+++.+ ..|+.|.+|++...+-
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--------------------------------------------- 83 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--------------------------------------------- 83 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeeccee---------------------------------------------
Confidence 467888999888766654 6788999999976322
Q ss_pred ceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC--------
Q 006909 261 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-------- 330 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-------- 330 (626)
...+......+..+.|+|+| .|.+...+-.|.+|.+.+......-.....+..++|+| ++++.+.++.-
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHH
Confidence 23344456789999999998 67788889999999998877765554455678899999 88887765532
Q ss_pred ----------------------------CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC
Q 006909 331 ----------------------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 382 (626)
Q Consensus 331 ----------------------------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~ 382 (626)
..+.+||.--.-.+......-.+..++|+|.++++++|+.|+.+++.+--+-
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW 242 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW 242 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence 1233333221111112223356889999999999999999998876432110
Q ss_pred ce--------------------------------------------------eee----EEeec-----cccccCCCCeE
Q 006909 383 DL--------------------------------------------------KLE----KVDFH-----DRKKTSGNKIT 403 (626)
Q Consensus 383 ~~--------------------------------------------------~~~----~~~~~-----~~~~~~~~~i~ 403 (626)
+. ..+ ...++ .....+...+.
T Consensus 243 k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g 322 (447)
T KOG4497|consen 243 KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAG 322 (447)
T ss_pred eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccc
Confidence 00 000 00000 11112234566
Q ss_pred EEEEcCCCCcEEEEEeCC--CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 404 GIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
-++|++|. .++++-... +.+.+||+++... ........+|....|+|....|+.+.....+++|.....
T Consensus 323 ~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l-~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 323 KLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL-HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred eeeecCCc-eEEeeecCCCCceEEEEechhhhh-hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 79999995 566665443 6899999875432 222235678999999999999888888888999998764
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=4.5e-12 Score=133.55 Aligned_cols=220 Identities=13% Similarity=0.143 Sum_probs=149.3
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
.+.+..|.+.|.+.+|||||+.|+..+. +..|.+||+.++..
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----------------------------------- 238 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----------------------------------- 238 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----------------------------------
Confidence 3456678899999999999999888763 46899999976421
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC-eE-EEEeCCCc--EEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEE
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS 326 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l-~s~s~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 326 (626)
..+..+.+.+...+|+|+| .| ++.+.++. |.+||+.++.......+........|+| +++.|+.
T Consensus 239 -----------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f 306 (435)
T PRK05137 239 -----------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVF 306 (435)
T ss_pred -----------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEE
Confidence 2333455667788999998 44 46666655 7777998887765555666677899999 9998887
Q ss_pred EeC-CC--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC---CcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909 327 GSI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 327 ~s~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 400 (626)
.+. +| .|+++|+.++....+......+....|+|+|+.|+....+ ..|.+||+.+.... .+. . ..
T Consensus 307 ~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~--~lt-~------~~ 377 (435)
T PRK05137 307 ESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER--ILT-S------GF 377 (435)
T ss_pred EECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE--ecc-C------CC
Confidence 764 33 6888898887776665555667778999999999887654 35778887654321 111 1 12
Q ss_pred CeEEEEEcCCCCcEEEEEeC-C-----CcEEEEeCCcceeeeeecCCCCCeEEEEEcC
Q 006909 401 KITGIQFSRDESQRIMITSE-D-----SKLRILDGVDVIHKFKGLPKSGSQMSASFTT 452 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~-d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 452 (626)
.+..+.|+||| +.|+..+. . ..+.++|+...... .. ...+.+...+|+|
T Consensus 378 ~~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l-~~~~~~~~p~Wsp 432 (435)
T PRK05137 378 LVEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRNER-EV-PTPGDASDPAWSP 432 (435)
T ss_pred CCCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCceE-Ec-cCCCCccCcccCC
Confidence 46678999998 45544433 3 25777776532221 11 1233456667765
No 226
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.6e-11 Score=122.32 Aligned_cols=321 Identities=17% Similarity=0.211 Sum_probs=194.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 182 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
..++..++|++|+++|.+. +..++|++..+.. .+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~---------------------------------------------~~ 68 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK---------------------------------------------VV 68 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc---------------------------------------------EE
Confidence 3478899999999988865 5679999987632 11
Q ss_pred eeeccCccceEEEEEcCCC-eEEE-----EeC-----CCcEEEeccCCCeeeEeecC-CCCeEEEEEeeCCCCEEEEEeC
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLS-----CSM-----DKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s-----~s~-----d~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
.+. ....+.++.|+|-+ +|.+ ... ...+.+|+++++.....+.. ...-++..|++ +..+.+- -.
T Consensus 69 lt~--~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~-dEsl~ar-lv 144 (566)
T KOG2315|consen 69 LCV--ELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSI-DESLAAR-LV 144 (566)
T ss_pred EEe--ccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCccccccc-chhhhhh-hh
Confidence 111 12267888888876 4443 112 23477999998655555531 11126889998 6654432 23
Q ss_pred CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCC--CEEEE-----EecCCcEEEEEcCCCce--eeeEEeeccccccCCC
Q 006909 330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDG--KGFIV-----GSITGTCHFYKASGNDL--KLEKVDFHDRKKTSGN 400 (626)
Q Consensus 330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g--~~l~~-----g~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~ 400 (626)
.+.+.+|++..-+.....-+...|+.+.++|.+ ..+++ ++.-+.+++|....... ....-.+- ..
T Consensus 145 ~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF------ka 218 (566)
T KOG2315|consen 145 SNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF------KA 218 (566)
T ss_pred cceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc------cc
Confidence 467999999886665556667789999999873 34443 34456899998762211 11111111 12
Q ss_pred CeEEEEEcCCCCcEEEEEeCC-----------CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE--eCCccEE
Q 006909 401 KITGIQFSRDESQRIMITSED-----------SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI--GDDCRVY 467 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~--s~dg~I~ 467 (626)
.=..+.|++-|..+|+.++.| .+++++++......+.. ...++|.++.|+|+|+-++.+ -.-..+.
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVT 297 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEE
Confidence 334677888876666665543 36777777633333333 357899999999999766553 4567888
Q ss_pred EEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccC
Q 006909 468 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSN 547 (626)
Q Consensus 468 iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~ 547 (626)
|||++.. +. .-.|.|...++-|+|.|.++...+-+.+
T Consensus 298 ifnlr~~--~v-----------~df~egpRN~~~fnp~g~ii~lAGFGNL------------------------------ 334 (566)
T KOG2315|consen 298 IFNLRGK--PV-----------FDFPEGPRNTAFFNPHGNIILLAGFGNL------------------------------ 334 (566)
T ss_pred EEcCCCC--Ee-----------EeCCCCCccceEECCCCCEEEEeecCCC------------------------------
Confidence 9988763 11 1123344444444444444333233222
Q ss_pred CCCcccccCCCCCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceEEEEec------CCceEeeeeecC
Q 006909 548 DGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAG------CDGMIKTFHNYG 621 (626)
Q Consensus 548 dg~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g------~Dg~Irvw~~~g 621 (626)
-|.+.+||+... +..............+++ ||++|+||. -|.-|+|||.+|
T Consensus 335 -----------~G~mEvwDv~n~-----------K~i~~~~a~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 335 -----------PGDMEVWDVPNR-----------KLIAKFKAANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred -----------CCceEEEeccch-----------hhccccccCCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecC
Confidence 245667776654 222222222333345666 788888877 367899999999
Q ss_pred cccc
Q 006909 622 LPIR 625 (626)
Q Consensus 622 ~p~~ 625 (626)
-+++
T Consensus 392 ~~l~ 395 (566)
T KOG2315|consen 392 SLLH 395 (566)
T ss_pred ceee
Confidence 8764
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=6.6e-12 Score=117.56 Aligned_cols=263 Identities=17% Similarity=0.301 Sum_probs=170.2
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
-.+-|.++.|..+|.+||||..+|.|.++.-+..... ...+...-+++ ..+..
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-----------------ey~~~t~fqsh----------epEFD 76 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-----------------EYNFQTEFQSH----------EPEFD 76 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeeccccccc-----------------ceeeeeeeecc----------Ccccc
Confidence 3456899999999999999999999999976542110 00000000000 00001
Q ss_pred CceeeccCccceEEEEEcCCC---eEEEEeCCCcEEEeccCCCe-----------------------------------e
Q 006909 260 PLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQ-----------------------------------C 301 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~-----------------------------------~ 301 (626)
.+..+ .-...|+.+.|.+++ .++..+.|++|++|.+.... +
T Consensus 77 YLkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~p 155 (433)
T KOG1354|consen 77 YLKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASP 155 (433)
T ss_pred hhhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeee
Confidence 11111 124678999998764 77888899999999874221 1
Q ss_pred eEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-C---eEEEeccC-----CCCeEEEEEee-CCCEEEEEe
Q 006909 302 LNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-K---RVVDWADV-----RDVISAICYIP-DGKGFIVGS 369 (626)
Q Consensus 302 ~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~---~~~~~~~~-----~~~i~~i~~sp-~g~~l~~g~ 369 (626)
.+.+ .|.-.|+++.++. +...++++. |=.|.+|++.- . .++...++ ...|++..|+| ..+.++-.+
T Consensus 156 rRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 156 RRVYANAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeeccccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 1122 2677789999998 888888865 67899999853 2 23333332 35689999999 467888899
Q ss_pred cCCcEEEEEcCCCceeeeEEee-cc-c-------cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC---cceeeee
Q 006909 370 ITGTCHFYKASGNDLKLEKVDF-HD-R-------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---DVIHKFK 437 (626)
Q Consensus 370 ~dg~i~i~d~~~~~~~~~~~~~-~~-~-------~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~---~~~~~~~ 437 (626)
..|+|++.|++...+-.....+ .. . ....-..|..+.|+++| +++++-. --+|++||+. .++..+.
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRD-yltvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRD-YLTVKLWDLNMEAKPVETYP 311 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEec-cceeEEEeccccCCcceEEe
Confidence 9999999999844322110000 00 0 00112568899999998 5666543 3799999974 3444554
Q ss_pred ecCC----------CCC---eEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 438 GLPK----------SGS---QMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 438 ~~~~----------~~~---v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+.. ... -..++|+-++.+++||+..+..+++++..+
T Consensus 312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 312 VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 4221 112 245789999999999999999999997665
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=5.7e-12 Score=132.18 Aligned_cols=208 Identities=15% Similarity=0.148 Sum_probs=130.7
Q ss_pred CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC---CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEE
Q 006909 289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF 365 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l 365 (626)
..|.++|...........+...+.+.+|+| +++.|+..+.+ ..|.+||+.+++...+......+.+..|+|||+.|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 467788876544444456778899999999 99998887643 35999999998877666566677889999999988
Q ss_pred EE-EecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC--Ccc-eeeeeecCC
Q 006909 366 IV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG--VDV-IHKFKGLPK 441 (626)
Q Consensus 366 ~~-g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~--~~~-~~~~~~~~~ 441 (626)
+. .+.+|...+|.+.........+.. +........|+|||..+++++..++...||.. ... ...+.. .
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~ 326 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLRRLTQ------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--T 326 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcEECCC------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--C
Confidence 75 567777666655322111222211 12345678899998444444444566666653 322 222222 2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCc---cEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCC
Q 006909 442 SGSQMSASFTTTGKHIISIGDDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG 506 (626)
Q Consensus 442 ~~~v~~~~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~ 506 (626)
........|+|||++|+..+.++ .|++||+.++......... ......|+|+|..++.+....|
T Consensus 327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-RDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-CccCceECCCCCEEEEEEecCC
Confidence 23344678999999999877554 6999999876322211111 1123456666665555544333
No 229
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.48 E-value=3.2e-11 Score=114.33 Aligned_cols=235 Identities=10% Similarity=0.024 Sum_probs=159.7
Q ss_pred ccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeee-EeecCCCCeEEEEEeeCCCCEEEEEeCCC--cEEEEeCCCCeE
Q 006909 268 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRV 343 (626)
Q Consensus 268 ~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~s~s~dg--~v~iwd~~~~~~ 343 (626)
...+..+.|+.+. .|..|+.|| .+++........ ........|.-+-|+ ..++|..+.+. .+++++.+.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCce
Confidence 3456677788777 555666666 678877644331 111233456666674 46666666554 499999988887
Q ss_pred EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE--eCC
Q 006909 344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT--SED 421 (626)
Q Consensus 344 ~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~--s~d 421 (626)
+-.......|.++.++.+ +|++.-.+. |+|||+++.+..-..... ..+...+..+.+++.+ .+++.- ...
T Consensus 81 ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~----~~n~~gl~AlS~n~~n-~ylAyp~s~t~ 152 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETT----PPNPKGLCALSPNNAN-CYLAYPGSTTS 152 (391)
T ss_pred EEEEecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhcc----CCCccceEeeccCCCC-ceEEecCCCCC
Confidence 776777788888887644 677666554 999999988764322111 1223556666666665 466643 335
Q ss_pred CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCcc-EEEEECCCCCCCCCCcc---CCccceeeeccCCcE
Q 006909 422 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR-VYVWNYDELCFPSSKQK---NSVRSCEHFFSEGVS 497 (626)
Q Consensus 422 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~-I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~g~~ 497 (626)
|.|.|||+.+.........|.+.+.+++|+++|.+|||+|+.|+ |+|+.+.++.....-+. -..+..+.|+|++.+
T Consensus 153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 89999999887777666779999999999999999999999886 69999998843322222 223344577777777
Q ss_pred EEEecCCCCcccccccC
Q 006909 498 VAVQWPGIGTEQKSLCS 514 (626)
Q Consensus 498 ~av~~s~~~~~l~~~~~ 514 (626)
++++-+-+...++.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 77776666666666554
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=6.7e-12 Score=132.08 Aligned_cols=220 Identities=15% Similarity=0.159 Sum_probs=146.0
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecC
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 250 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (626)
.+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.++..
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~----------------------------------- 240 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR----------------------------------- 240 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----------------------------------
Confidence 34566788899999999999999987743 4699999876422
Q ss_pred CccccccCCCceeeccCccceEEEEEcCCC-eE-EEEeCCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEE
Q 006909 251 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS 326 (626)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l-~s~s~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 326 (626)
..+..+.+...+.+|+|+| .| ++.+.++ .|.+||+.+++......+.......+|+| +++.|+.
T Consensus 241 -----------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f 308 (433)
T PRK04922 241 -----------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYF 308 (433)
T ss_pred -----------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEE
Confidence 1222233344578999998 44 4555555 59999999887665555555567889999 9998887
Q ss_pred EeC-CCc--EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC---cEEEEEcCCCceeeeEEeeccccccCCC
Q 006909 327 GSI-DGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 327 ~s~-dg~--v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 400 (626)
++. +|. |+++|+.+++...+.........++|+|+|++++..+.++ .|.+||+.++... .+. ++ .
T Consensus 309 ~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt-~~------~ 379 (433)
T PRK04922 309 TSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT-PG------S 379 (433)
T ss_pred EECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC-CC------C
Confidence 764 444 7777887776655444444555789999999998876543 6899998776543 111 11 2
Q ss_pred CeEEEEEcCCCCcEEEEEeC-C--CcEEEEeCCcc-eeeeeecCCCCCeEEEEEcC
Q 006909 401 KITGIQFSRDESQRIMITSE-D--SKLRILDGVDV-IHKFKGLPKSGSQMSASFTT 452 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~-d--g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp 452 (626)
......|+||| ++++..+. . +.|.+++.... ...+. .+.+.+...+|+|
T Consensus 380 ~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~~~~~l~--~~~g~~~~p~wsp 432 (433)
T PRK04922 380 LDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGRVRQRLV--SADGEVREPAWSP 432 (433)
T ss_pred CCCCceECCCC-CEEEEEEecCCceEEEEEECCCCceEEcc--cCCCCCCCCccCC
Confidence 33456899998 45555444 2 35777776532 22222 2345566677776
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=6.7e-12 Score=115.85 Aligned_cols=113 Identities=19% Similarity=0.416 Sum_probs=91.4
Q ss_pred CccceEEEEEcCCC-eEE--EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC---CcEEEEeCCC
Q 006909 267 HKGDVLDLAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE 340 (626)
Q Consensus 267 h~~~V~~l~~s~~~-~l~--s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~v~iwd~~~ 340 (626)
..++|.+++|+|++ .++ +|..++.|.+||++ ++.+..+. ...++.+.|+| +|+++++|+.+ |.|.+||+++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 34579999999987 543 45567899999997 66666664 46788999999 99999998754 6699999998
Q ss_pred CeEEEeccCCCCeEEEEEeeCCCEEEEEec------CCcEEEEEcCCCc
Q 006909 341 KRVVDWADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGND 383 (626)
Q Consensus 341 ~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~------dg~i~i~d~~~~~ 383 (626)
.+.+....+.. ++.++|+|+|+++++++. |+.++||+..+..
T Consensus 135 ~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 135 KKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred CEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 88887666654 789999999999999874 6888999987553
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.41 E-value=8.8e-11 Score=119.41 Aligned_cols=324 Identities=13% Similarity=0.090 Sum_probs=181.4
Q ss_pred EEEEeCCCcEEEeccCCCeeeEeecCCCCe-EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee
Q 006909 282 LLSCSMDKTVRMWQVGCNQCLNVFDHHNYV-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP 360 (626)
Q Consensus 282 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp 360 (626)
+++-..++.|.+.|..+.+.+..+.....+ ..+.|+| +++++++++.||.|.++|+.+.+++...........+++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 456667899999999999999999754444 4577889 99999999999999999999999988888888889999999
Q ss_pred CCCEEEEEe-cCCcEEEEEcCCCceeeeEEeecc-ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-eee
Q 006909 361 DGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHD-RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFK 437 (626)
Q Consensus 361 ~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~ 437 (626)
||++++++. ..+.+.++|..+.+.... +.... .......++..+..+|....++++.-+.+.|.+.|..+... ...
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~-I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKT-IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEE-EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceee-cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 999999875 689999999988765433 22111 11113457888888888754555666668999999654311 112
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEE-eCCccEEEEECCCCCCCCCCcc---CCccceee-eccC-CcEEEEecCCCCccc-c
Q 006909 438 GLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPSSKQK---NSVRSCEH-FFSE-GVSVAVQWPGIGTEQ-K 510 (626)
Q Consensus 438 ~~~~~~~v~~~~~sp~g~~l~s~-s~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~-~~~~-g~~~av~~s~~~~~l-~ 510 (626)
............|+|+++|++.+ ..++.|-++|..+......... ........ .||. |.+.+.. ..+... .
T Consensus 167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~--~~~~~~~~ 244 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS--GLGYFAIP 244 (369)
T ss_dssp EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE--BSSSSEEE
T ss_pred eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec--cccceecc
Confidence 22234567889999999987765 4567899999888632211111 00111111 2333 2333332 122222 2
Q ss_pred cccCCCcc-ccCccccccCCCCcccCCCcccCCccccCCCCccccc---CCCCCCCCCCCcccCCCCCCCChhhHHHHhh
Q 006909 511 SLCSSSLR-DCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSA---TWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQ 586 (626)
Q Consensus 511 ~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~s~dg~~l~s~---~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 586 (626)
....+... .....|......+. .+.. .-+..+||++++... ......|.++|..+.. .. . . ...
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~---~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~-~-----~-i~~ 312 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPT---QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VV-K-----T-ITP 312 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE----SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EE-E-------HHH
T ss_pred cccCCccccchhhcCeEEEEEEC---CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc-ee-E-----E-Eec
Confidence 23333322 22344555443332 2222 556679999988765 3324688889888751 00 0 0 001
Q ss_pred hccCCccccccccccceEEE-EecCCc-eEeeeeecCc
Q 006909 587 CLNNVDDVRAISATWGLVIV-TAGCDG-MIKTFHNYGL 622 (626)
Q Consensus 587 ~~~~~~~~~~~s~~dg~~iv-t~g~Dg-~Irvw~~~g~ 622 (626)
..........+++ ||+.+- |...++ .|.+|+..-|
T Consensus 313 ~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 313 GPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp HHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTT
T ss_pred cCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCc
Confidence 1111122245666 676544 433333 7999986543
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=2.8e-11 Score=115.52 Aligned_cols=203 Identities=18% Similarity=0.218 Sum_probs=153.1
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
....+++|..++.. || .|++|-.+|.+.+|....+...
T Consensus 101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h---------------------------------------- 138 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH---------------------------------------- 138 (412)
T ss_pred cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccc----------------------------------------
Confidence 34566778777765 34 6777888999999998864321
Q ss_pred cCCCceeeccCccceEEEEEcCC--CeEEEEeCC--CcEEEeccCCCeeeEeec----------CCCCeEEEEEeeCC--
Q 006909 257 EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMD--KTVRMWQVGCNQCLNVFD----------HHNYVTCVQFNPID-- 320 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d--~~v~iwd~~~~~~~~~~~----------~~~~v~~~~~~p~~-- 320 (626)
..++..+..+ ..+..+.-++. +.+++|+.. ..+.|||++..+.+..-. .+-+++.+.|.+ .
T Consensus 139 -ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~ 215 (412)
T KOG3881|consen 139 -SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSP 215 (412)
T ss_pred -cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC-CCC
Confidence 1223333333 34444554543 367779988 889999999875554431 344678899988 5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe--EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccC
Q 006909 321 DNYFISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 398 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 398 (626)
...|++++.-+.|++||.+.++ +..+.-...+++++...|+|+.+++|..-|.+..||++++...... ....
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~------~kg~ 289 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG------LKGI 289 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc------cCCc
Confidence 7889999999999999998654 3445566789999999999999999999999999999988765432 2233
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909 399 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 399 ~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
.+.|+++..+|.. .++++++-|..|+|+|+.+
T Consensus 290 tGsirsih~hp~~-~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 290 TGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cCCcceEEEcCCC-ceEEeeccceeEEEeeccc
Confidence 4899999999996 7999999999999999876
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=3.6e-11 Score=111.01 Aligned_cols=149 Identities=14% Similarity=0.294 Sum_probs=102.6
Q ss_pred EEEEEeeCCCCEEEEEeC----------CCcEEEEeC--CCCeEEEe-ccCCCCeEEEEEeeCCCEEEEE--ecCCcEEE
Q 006909 312 TCVQFNPIDDNYFISGSI----------DGKVRIWGV--CEKRVVDW-ADVRDVISAICYIPDGKGFIVG--SITGTCHF 376 (626)
Q Consensus 312 ~~~~~~p~~~~~l~s~s~----------dg~v~iwd~--~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~g--~~dg~i~i 376 (626)
..+.|+| .|++|+.-.. -+...+|.+ .......+ ....++|.+++|+|+|+.|++. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3567888 7776654332 123444444 43333332 2334579999999999987664 45679999
Q ss_pred EEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC---CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC
Q 006909 377 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE---DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT 453 (626)
Q Consensus 377 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 453 (626)
||++.... ..+. ...+..+.|+|+| +++++++. .|.|.+||..+....... ....++.++|+|+
T Consensus 88 yd~~~~~i----~~~~------~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~~~t~~~WsPd 154 (194)
T PF08662_consen 88 YDVKGKKI----FSFG------TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHSDATDVEWSPD 154 (194)
T ss_pred EcCcccEe----Eeec------CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeecc--ccCcEEEEEEcCC
Confidence 99962221 1222 2567889999998 67777764 467999999866555444 2345789999999
Q ss_pred CCEEEEEeC------CccEEEEECCCC
Q 006909 454 GKHIISIGD------DCRVYVWNYDEL 474 (626)
Q Consensus 454 g~~l~s~s~------dg~I~iwd~~~~ 474 (626)
|++|++++. |+.++||++.+.
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecCe
Confidence 999999874 788999999764
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=1.3e-10 Score=118.18 Aligned_cols=292 Identities=14% Similarity=0.066 Sum_probs=159.3
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEe-CCCcEEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIW 336 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s-~dg~v~iw 336 (626)
+.+..+......-..+.|+||+ ++++++.||.|.++|+.+++.+..+.......++++++ ++++++++. ..+.+.++
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~-DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP-DGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE---TTTEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC-CCCEEEEEecCCCceeEe
Confidence 3455555444444557789988 78888999999999999999999998888889999999 999988775 57999999
Q ss_pred eCCCCeEEEecc--------CCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909 337 GVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 407 (626)
Q Consensus 337 d~~~~~~~~~~~--------~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 407 (626)
|.++.+++.... ....+.++..+|....+++.-.+ +.|-+.|.............. ........|
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~------g~~~~D~~~ 179 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV------GRFPHDGGF 179 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--------TTEEEEEE
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc------ccccccccc
Confidence 999988766432 23467788888988867666554 888888877654332211111 256778999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCcceeeeee----cCCCCCeEEEEEcCCC-CEEEEEe---------CCccEEEEECCC
Q 006909 408 SRDESQRIMITSEDSKLRILDGVDVIHKFKG----LPKSGSQMSASFTTTG-KHIISIG---------DDCRVYVWNYDE 473 (626)
Q Consensus 408 s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~sp~g-~~l~s~s---------~dg~I~iwd~~~ 473 (626)
+|++..++++...++.|-++|..+....... ..|..+...+ .+|.. ...++.+ ....+.+|+..+
T Consensus 180 dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 180 DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp -TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred CcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhc
Confidence 9998545555677889999998765433322 1233333332 23332 1122221 122333444443
Q ss_pred CCCCCCCccCCccceeeeccCCcEEEEe--cCCCCcccccccCCCccccCccccccCC--CCcc-cCCCcccCCccccCC
Q 006909 474 LCFPSSKQKNSVRSCEHFFSEGVSVAVQ--WPGIGTEQKSLCSSSLRDCSQKWDNLET--APWI-RDSERFSLGSWFSND 548 (626)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~g~~~av~--~s~~~~~l~~~~~~~~~~~~~~w~~~~~--~~~~-~~~~~~~~~~~~s~d 548 (626)
.............-.+..||++..+.+. .+++... +.+.+.... ...+ ...+..+..+.|++|
T Consensus 259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~------------v~viD~~tl~~~~~i~~~~~~~~~h~ef~~d 326 (369)
T PF02239_consen 259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADT------------VQVIDKKTLKVVKTITPGPGKRVVHMEFNPD 326 (369)
T ss_dssp TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-------------EEEEECCGTEEEE-HHHHHT--EEEEEE-TT
T ss_pred CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCce------------EEEEECcCcceeEEEeccCCCcEeccEECCC
Confidence 3211111111111223334444444443 1122122 222222111 1111 111223778899999
Q ss_pred CCcccccCCCCC-CCCCCCcccC
Q 006909 549 GPCRGSATWPAE-KLPLWDVTID 570 (626)
Q Consensus 549 g~~l~s~~~~d~-~i~vwd~~~~ 570 (626)
|+.+-.+.|..+ .|.++|..+.
T Consensus 327 G~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 327 GKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp SSEEEEEEE--TTEEEEEETTTT
T ss_pred CCEEEEEEecCCCEEEEEECCCc
Confidence 998777776444 7999999886
No 236
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=1.1e-11 Score=116.21 Aligned_cols=239 Identities=14% Similarity=0.303 Sum_probs=154.4
Q ss_pred cCcEEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 181 KGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 181 ~~~V~~l~fspdg~--~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
...|+.+.|.++++ .++..+.|.+|++|.+.........+..... ........++........ ..++.
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~-~~~~~~~~lr~p~~~~~~---------~~vea 153 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEE-GPPGTITSLRLPVEGRHD---------LEVEA 153 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeecccccccccccccc-CCCCccceeeceeecccc---------ceeee
Confidence 34688889988765 5666678999999998764332211100000 001111111111111111 11123
Q ss_pred CCceeec-cCccceEEEEEcCCCeEEEEeCCCcEEEeccCC-CeeeEeec--------CCCCeEEEEEeeCCCCEEEEEe
Q 006909 259 SPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD--------HHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 259 ~~~~~~~-~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~--------~~~~v~~~~~~p~~~~~l~s~s 328 (626)
.|.+.+. +|+-.|++|.++.|+..+.++.|-.|.+|+++- .++..... ...-|++..|+|...+.|+-.+
T Consensus 154 ~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 154 SPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 3444443 799999999999998555556778999999863 33333322 3346899999998888999999
Q ss_pred CCCcEEEEeCCCCeEEE-----------------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEee
Q 006909 329 IDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF 391 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~-----------------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 391 (626)
..|+|++-|++...+.. +...-..|..+.|+++|+++++-.. -++++||+.....+......
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence 99999999998644321 1112245888999999999987543 58999999877766666665
Q ss_pred ccccccC------CCC---eEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909 392 HDRKKTS------GNK---ITGIQFSRDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 392 ~~~~~~~------~~~---i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
+...+.. ... -..++|+.++ .++++|+..+.++++++..
T Consensus 313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 313 HEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred hHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCC
Confidence 5432211 112 2357888887 6999999999999999553
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.37 E-value=3.3e-10 Score=119.43 Aligned_cols=201 Identities=18% Similarity=0.258 Sum_probs=137.2
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeCC---CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEE-EeCCC--cE
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDG--KV 333 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~s~dg--~v 333 (626)
.+.+..+...+...+|+|+| +|+.++.+ ..|++||+.+++......+...+.+++|+| +++.|+. .+.++ .|
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccE
Confidence 34455566678899999998 66655543 479999999887665555666677899999 8887664 44444 58
Q ss_pred EEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 334 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 334 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
++||+.++....+..+........|+|+|+.|+..+. .+ .|+++++.+.... .+... ...+..+.|+|+
T Consensus 261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~--~l~~~------~~~~~~~~~spd 332 (417)
T TIGR02800 261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR--RLTFR------GGYNASPSWSPD 332 (417)
T ss_pred EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecC------CCCccCeEECCC
Confidence 9999998877776666655667899999998887654 33 5777777665432 22222 245677899999
Q ss_pred CCcEEEEEeCCC---cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc---cEEEEECCC
Q 006909 411 ESQRIMITSEDS---KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYDE 473 (626)
Q Consensus 411 ~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg---~I~iwd~~~ 473 (626)
| .+++.++.++ .|.+||+......... .........|+|+|++|+..+.++ .+++.+...
T Consensus 333 g-~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 333 G-DLIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred C-CEEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 8 5777766665 7888887653222211 122344568999999998877654 455655443
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.37 E-value=1.8e-11 Score=121.06 Aligned_cols=162 Identities=20% Similarity=0.391 Sum_probs=115.8
Q ss_pred cCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 181 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 181 ~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
+..|+|++|-|.+. .++.+-.+|.+.+||....... ...........+...+... .......
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~-----t~p~~~~~k~~~~f~i~t~------------ksk~~rN 281 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA-----TAPSYQALKDGDQFAILTS------------KSKKTRN 281 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccC-----CCCcccccCCCCeeEEeee------------eccccCC
Confidence 47899999999655 4555567899999987421000 0000000000000000000 0001124
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
|+..+.--.+.|+..+|+||| +|++.+.||.++|+|..+.+.+..+. --+...|++|+| |+++|++|+.|.-|.||.
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEE
Confidence 555555556799999999998 99999999999999999888777664 456789999999 999999999999999999
Q ss_pred CCCCeEEE-eccCCCCeEEEEEee
Q 006909 338 VCEKRVVD-WADVRDVISAICYIP 360 (626)
Q Consensus 338 ~~~~~~~~-~~~~~~~i~~i~~sp 360 (626)
+..++++. -.+|+..|+.++|.|
T Consensus 361 f~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccceEEEeccccccceeeEeecc
Confidence 99988876 478999999999998
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=2.8e-10 Score=119.81 Aligned_cols=202 Identities=17% Similarity=0.186 Sum_probs=128.7
Q ss_pred eeeccCccceEEEEEcCCC-eEEEEeC-CC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEE-EeCCCc--EE
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGK--VR 334 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~s~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~s~dg~--v~ 334 (626)
+.+..+...+....|+|+| .|+..+. ++ .|.+||+.+++..............+|+| +++.|+. .+.+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEE
Confidence 3444566788899999998 5665443 33 58888998877644433334445789999 8887765 455664 88
Q ss_pred EEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 335 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 335 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
++|+.+++...+..+.......+|+|||+.++..+. ++ .|.++|+.+++.. .+...+ .......|+|||
T Consensus 290 ~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~--~Lt~~g------~~~~~~~~SpDG 361 (448)
T PRK04792 290 VVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS--RLTFEG------EQNLGGSITPDG 361 (448)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EEecCC------CCCcCeeECCCC
Confidence 889998888777766666788999999998877654 34 4666676655432 222222 223456899998
Q ss_pred CcEEEEEeCCCc--EEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC-c--cEEEEECCCC
Q 006909 412 SQRIMITSEDSK--LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-C--RVYVWNYDEL 474 (626)
Q Consensus 412 ~~~l~~~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d-g--~I~iwd~~~~ 474 (626)
..++++...++. |.++|+......... .........|+|+|++|+..+.+ + .+++++.+..
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt--~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQVLT--STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 544444444554 455676543222111 11122345799999998876643 3 4777787543
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.34 E-value=1.5e-10 Score=122.09 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=135.6
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
+.+..|...+.+.+|+|||++||.++.+ ..|++||+.++..
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~------------------------------------ 226 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR------------------------------------ 226 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE------------------------------------
Confidence 4455677789999999999999987654 4799999876321
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEE-EEeCCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~-s~s~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
..+..+...+.+++|+|++ .|+ +.+.++ .|.+||+.++.......+........|+| +++.|+..
T Consensus 227 ----------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~ 295 (417)
T TIGR02800 227 ----------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFT 295 (417)
T ss_pred ----------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEE
Confidence 1222344556678999998 454 444444 58889998876655555555556778999 99888766
Q ss_pred eCC-C--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC---cEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 328 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 328 s~d-g--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
+.. + .|+++|+.+++...+......+..+.|+|+|++++.++.++ .|.+||+.+..... +. .. ..
T Consensus 296 s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~--l~-~~------~~ 366 (417)
T TIGR02800 296 SDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV--LT-DT------GL 366 (417)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE--cc-CC------CC
Confidence 543 3 58888988887766665666778889999999999988776 78888887644321 11 11 12
Q ss_pred eEEEEEcCCCCcEEEEEeCCC---cEEEEeC
Q 006909 402 ITGIQFSRDESQRIMITSEDS---KLRILDG 429 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg---~i~iwd~ 429 (626)
.....|+|+|. .|+.++.++ .+.+.+.
T Consensus 367 ~~~p~~spdg~-~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 367 DESPSFAPNGR-MILYATTRGGRGVLGLVST 396 (417)
T ss_pred CCCceECCCCC-EEEEEEeCCCcEEEEEEEC
Confidence 34568999984 555554443 3444443
No 241
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=1.3e-09 Score=101.68 Aligned_cols=162 Identities=15% Similarity=0.213 Sum_probs=119.1
Q ss_pred CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccC-CCeeeEeec---CCCCeEEEEEeeCCCC-EEEE-EeCCCc
Q 006909 259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVFD---HHNYVTCVQFNPIDDN-YFIS-GSIDGK 332 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~---~~~~v~~~~~~p~~~~-~l~s-~s~dg~ 332 (626)
.++.++. ...+|.++.+.++..++. ..+.|.||... +.+.++.+. .+..+ ++..|..+. +||. |-.-|.
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGl--C~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGL--CSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cEEEEEE-eccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCce--EeecCCCCceEEEcCCCccce
Confidence 3444443 567899999988663333 34689999987 455666654 23333 334443333 3333 334589
Q ss_pred EEEEeCCCCeE---EEeccCCCCeEEEEEeeCCCEEEEEecCCc-EEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 333 VRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 333 v~iwd~~~~~~---~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
|.|-|+...+. ..+..|...|.|++++.+|..+|+++..|+ |||||..++....+.-.-. ....|.+++||
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-----d~A~iy~iaFS 235 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-----DRADIYCIAFS 235 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-----chheEEEEEeC
Confidence 99999977555 678899999999999999999999999996 6999999998766532222 23789999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCc
Q 006909 409 RDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
|+. .+|+++|+.|+++|+.++.
T Consensus 236 p~~-s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNS-SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCc-cEEEEEcCCCeEEEEEeec
Confidence 997 7999999999999998653
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=4.8e-10 Score=118.42 Aligned_cols=206 Identities=13% Similarity=0.163 Sum_probs=137.3
Q ss_pred cCCCceeeccCccceEEEEEcCCC-eEEEEeCC---CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE-EEeCCC
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG 331 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~s~dg 331 (626)
.+...+.+..+...+....|+|+| .|+..+.+ ..|.+||+.+++..........+....|+| +++.|+ +.+.+|
T Consensus 187 ~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g 265 (430)
T PRK00178 187 DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDG 265 (430)
T ss_pred CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCC
Confidence 344456666777889999999998 66655543 368999999887655444445566789999 888776 444455
Q ss_pred --cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 332 --KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 332 --~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
.|++||+.++....+..+........|+|+|+.++..+. +| .|+++++.++... .+...+ .......
T Consensus 266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~--~lt~~~------~~~~~~~ 337 (430)
T PRK00178 266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE--RVTFVG------NYNARPR 337 (430)
T ss_pred CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCC------CCccceE
Confidence 588889999887777766666778899999998877654 33 5677777665532 222211 2334578
Q ss_pred EcCCCCcEEEEEeC-CC--cEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC---ccEEEEECCCC
Q 006909 407 FSRDESQRIMITSE-DS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL 474 (626)
Q Consensus 407 ~s~~~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d---g~I~iwd~~~~ 474 (626)
|+|+|. .++..+. ++ .|.++|+......... .........|+|||++|+..+.+ ..|++++++..
T Consensus 338 ~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 338 LSADGK-TLVMVHRQDGNFHVAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred ECCCCC-EEEEEEccCCceEEEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 999984 5555543 33 5778887643322211 12223356899999999877654 35777777543
No 243
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.1e-10 Score=119.02 Aligned_cols=249 Identities=17% Similarity=0.268 Sum_probs=176.2
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
.....|+.|+....|+|+||.||.++|-.+.+... +......+...+ -.-
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~-------d~~~~glaa~sn-----------------------Lsm 63 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTT-------DLNKSGLAAASN-----------------------LSM 63 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCC-------cccccccccccc-----------------------cch
Confidence 34578999999999999999999999998876321 000000000000 122
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
-+++.||.+.|..+.|+.++ .|-++..+|.|.+|-+-.|+..... ...+.|.+++|+. +|..+...-.||.|.+=
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEE
Confidence 46788999999999999766 7889999999999999877655443 3567899999999 99999999999999888
Q ss_pred eCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee---ee-EEeeccccccCCCCeEEEEEc----
Q 006909 337 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK---LE-KVDFHDRKKTSGNKITGIQFS---- 408 (626)
Q Consensus 337 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~---~~-~~~~~~~~~~~~~~i~~l~~s---- 408 (626)
.+.+.++....-.......+.|++|.+.++.+-.+|.+.+||..++-.. .. .+...+.....+..|..+.|.
T Consensus 143 svdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 143 SVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred eeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 7777665543333334557899999999999999999999998754321 11 122222223334456667764
Q ss_pred ----CCCCcEEEEEeCCCcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909 409 ----RDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 409 ----~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
|+. -.++++...|.+.|....+ ....+.. ..-.+..+.|+++|..|+.++.+
T Consensus 223 ~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 223 QPVPPDR-PRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ccCCCCC-CEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCc
Confidence 354 4799999999998876432 2222222 23567889999999999998864
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=3.1e-10 Score=119.42 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=136.0
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeC-CC--cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGE-DG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~-Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
+.+..+...+.+..|||||+.|+..+. ++ .|.+||+.++...
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~----------------------------------- 255 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE----------------------------------- 255 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------------------------------
Confidence 345567778999999999998887654 33 5778888763221
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEE-EEeCCCc--EEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~-s~s~d~~--v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
.+..+ .+.....+|+|+| .|+ +.+.++. |.++|+.+++......+.......+|+| +++.++..
T Consensus 256 --------~lt~~---~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~ 323 (448)
T PRK04792 256 --------KVTSF---PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFT 323 (448)
T ss_pred --------EecCC---CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEE
Confidence 11111 2223467899998 454 5566665 7777888887655555555667889999 88887766
Q ss_pred eC-CC--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-C--cEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 328 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 328 s~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
+. ++ .|.++|+.+++...+..........+|+|+|++++..+.+ + .|.++|+.++.... +. .. ..
T Consensus 324 s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~--lt-~~------~~ 394 (448)
T PRK04792 324 SERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV--LT-ST------RL 394 (448)
T ss_pred ECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE--cc-CC------CC
Confidence 53 33 4777788877765544333334557899999998886653 4 45556776654321 11 11 11
Q ss_pred eEEEEEcCCCCcEEEEEeCCCc--EEEEeCCc-ceeeeeecCCCCCeEEEEEcC
Q 006909 402 ITGIQFSRDESQRIMITSEDSK--LRILDGVD-VIHKFKGLPKSGSQMSASFTT 452 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~--i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp 452 (626)
.....|+|+|..++++...++. +.+++... ....+. .+.+.+...+|+|
T Consensus 395 d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~--~~~g~~~~p~Wsp 446 (448)
T PRK04792 395 DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP--AGQGEVKSPAWSP 446 (448)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc--CCCCCcCCCccCC
Confidence 2234799998544555555554 66666542 222222 2345566677776
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.4e-09 Score=108.73 Aligned_cols=263 Identities=14% Similarity=0.212 Sum_probs=166.3
Q ss_pred cEEEEEEcCCCCEEEEEe-----CC-----CcEEEEEcCCCcce-----------eeeecCCCCCccCCCCCeeeecCCC
Q 006909 183 CIWTLKFSPDGRYLASGG-----ED-----GVVRIWHVTSVAAS-----------CKSFTDDGGFGSNAKEGKIKFGKKK 241 (626)
Q Consensus 183 ~V~~l~fspdg~~Latgs-----~D-----g~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (626)
.++++.|||-|.||.|=- .+ -.+++|+++++... +..|+.+..+.+-.....+.|....
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~ 154 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLG 154 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecC
Confidence 688999999999998731 12 34779999883221 1122222222222222223222222
Q ss_pred CCCceeecCCccccccCCCceeeccCccceEEEEEcCCC---eEEE-----EeCCCcEEEeccCCCeeeEeec----CCC
Q 006909 242 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLS-----CSMDKTVRMWQVGCNQCLNVFD----HHN 309 (626)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~---~l~s-----~s~d~~v~iwd~~~~~~~~~~~----~~~ 309 (626)
+ .....-.-|...|+.+.++|.+ .+++ .+.-..|+||...-........ ...
T Consensus 155 ~----------------f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka 218 (566)
T KOG2315|consen 155 S----------------FKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA 218 (566)
T ss_pred C----------------ccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc
Confidence 1 1111222357789999999873 4443 3555679999876322222211 222
Q ss_pred CeEEEEEeeCCCCEEEEEeC--C---------CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEE--EecCCcEEE
Q 006909 310 YVTCVQFNPIDDNYFISGSI--D---------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV--GSITGTCHF 376 (626)
Q Consensus 310 ~v~~~~~~p~~~~~l~s~s~--d---------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~--g~~dg~i~i 376 (626)
.-..+.|++....+|+.++. | .++++.++.+..+.......++|+++.|+|+|+.+++ |..-..+.|
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTI 298 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence 33456787733344444433 2 3688888886566656666899999999999987766 556678999
Q ss_pred EEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEeCCcceeeeeecCCCCCeEEEEEcCC
Q 006909 377 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTT 453 (626)
Q Consensus 377 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 453 (626)
||++..-. ..+. .++-.++-|+|.| ++++.++.+ |.+-|||+.+....... ....-+-+.|+||
T Consensus 299 fnlr~~~v----~df~------egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i~~~--~a~~tt~~eW~Pd 365 (566)
T KOG2315|consen 299 FNLRGKPV----FDFP------EGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLIAKF--KAANTTVFEWSPD 365 (566)
T ss_pred EcCCCCEe----EeCC------CCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhcccc--ccCCceEEEEcCC
Confidence 99986532 1122 2677889999998 566666554 89999998763333332 3345567899999
Q ss_pred CCEEEEEeC------CccEEEEECCCC
Q 006909 454 GKHIISIGD------DCRVYVWNYDEL 474 (626)
Q Consensus 454 g~~l~s~s~------dg~I~iwd~~~~ 474 (626)
|.+++|++. |+.++||++.+.
T Consensus 366 Ge~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 366 GEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CcEEEEEeccccEEecCCeEEEEecCc
Confidence 999999874 788999999875
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=5e-10 Score=118.27 Aligned_cols=220 Identities=15% Similarity=0.132 Sum_probs=139.1
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 251 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (626)
+.+..|...+...+|||||+.|+..+.+ ..|.+|++.++..
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~------------------------------------ 235 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR------------------------------------ 235 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE------------------------------------
Confidence 4555778889999999999999876643 3588888876422
Q ss_pred ccccccCCCceeeccCccceEEEEEcCCC-eEE-EEeCCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE
Q 006909 252 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 252 ~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~-s~s~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 327 (626)
..+....+.+....|+|+| .|+ +.+.++ .|.+||+.++.......+........|+| +++.++..
T Consensus 236 ----------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~ 304 (430)
T PRK00178 236 ----------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFT 304 (430)
T ss_pred ----------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEE
Confidence 1112222334568999998 554 555555 58888999887655545555566789999 88887766
Q ss_pred eC-CC--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-C--cEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 328 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 328 s~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
+. +| .|+++|+.+++...+...........|+|+|+.++..+.. + .|.++|+.++.... +. .. ..
T Consensus 305 s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt-~~------~~ 375 (430)
T PRK00178 305 SDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LT-DT------SL 375 (430)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--cc-CC------CC
Confidence 54 33 5778888877765544333334567899999999887654 3 57888887765322 11 11 11
Q ss_pred eEEEEEcCCCCcEEEEEeCCC--cEEEEeCCcce-eeeeecCCCCCeEEEEEcC
Q 006909 402 ITGIQFSRDESQRIMITSEDS--KLRILDGVDVI-HKFKGLPKSGSQMSASFTT 452 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg--~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp 452 (626)
.....|+|+|..++++...++ .|.+++..... ..+. ...+.+...+|+|
T Consensus 376 ~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~--~~~g~~~~p~ws~ 427 (430)
T PRK00178 376 DESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP--TAQGEVREPSWSP 427 (430)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc--CCCCCcCCCccCC
Confidence 224589999854444444444 45666654222 2222 2344566667765
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.27 E-value=1.5e-08 Score=103.28 Aligned_cols=250 Identities=16% Similarity=0.172 Sum_probs=158.1
Q ss_pred cCcEEEEEEcCCCCEEEEEeC----CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 181 KGCIWTLKFSPDGRYLASGGE----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
......++++|++++|.+... +|.|..|++..... .
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g------------------~---------------------- 75 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG------------------T---------------------- 75 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT------------------E----------------------
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc------------------e----------------------
Confidence 344567889999999998876 46888888765200 0
Q ss_pred cCCCceeeccCccceEEEEEcCCC-eEEEEe-CCCcEEEeccCC-CeeeEe---ec-----------CCCCeEEEEEeeC
Q 006909 257 EESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-NQCLNV---FD-----------HHNYVTCVQFNPI 319 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s-~d~~v~iwd~~~-~~~~~~---~~-----------~~~~v~~~~~~p~ 319 (626)
-..+............++++|++ +|+++. .+|.|.++++.. +..... +. ......++.++|
T Consensus 76 -L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p- 153 (345)
T PF10282_consen 76 -LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP- 153 (345)
T ss_dssp -EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-
T ss_pred -eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-
Confidence 01122222233455678889987 555554 589999999976 433322 21 234578999999
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCe--EEE----eccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcC--CCceeee-E
Q 006909 320 DDNYFISGSI-DGKVRIWGVCEKR--VVD----WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GNDLKLE-K 388 (626)
Q Consensus 320 ~~~~l~s~s~-dg~v~iwd~~~~~--~~~----~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~--~~~~~~~-~ 388 (626)
+++++++... ...|.+|++.... +.. ..........+.|+|+++++++.. .++.|.+|++. .+..... .
T Consensus 154 dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 154 DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 9998887654 3479999987644 322 234556788999999999887765 46789999998 3322221 1
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc---ceeeeee-cCCCCCeEEEEEcCCCCEEEEEe-CC
Q 006909 389 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKG-LPKSGSQMSASFTTTGKHIISIG-DD 463 (626)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~---~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s-~d 463 (626)
+...............|+++|||..++++....+.|.+|++.. ....... .........+.++|+|++|+++. .+
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 1111111111236889999999854444555678999999731 1222211 21344589999999999999887 45
Q ss_pred ccEEEEECC
Q 006909 464 CRVYVWNYD 472 (626)
Q Consensus 464 g~I~iwd~~ 472 (626)
+.|.+|+++
T Consensus 314 ~~v~vf~~d 322 (345)
T PF10282_consen 314 NTVSVFDID 322 (345)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 789999875
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=5.5e-10 Score=111.59 Aligned_cols=208 Identities=9% Similarity=0.087 Sum_probs=146.3
Q ss_pred cCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEe----------------------------ec---------
Q 006909 266 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNV----------------------------FD--------- 306 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~----------------------------~~--------- 306 (626)
.|...-+.|..+||| .+++|...-.|++||+.+-..-.. +.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 577888999999998 577888889999999864321100 00
Q ss_pred ---CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccC-CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC
Q 006909 307 ---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASGN 382 (626)
Q Consensus 307 ---~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~ 382 (626)
.+..-..++++..... |++++....|+-+++..|+.+..... .+.++++..++...+|++|+.+|.+.+||.+..
T Consensus 129 ~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 0111233444432333 44444456788889999987765444 488999999999999999999999999999876
Q ss_pred ceeeeEEeeccccccCC-----CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeee-eecCCCCCeEEEEEcCC--C
Q 006909 383 DLKLEKVDFHDRKKTSG-----NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFTTT--G 454 (626)
Q Consensus 383 ~~~~~~~~~~~~~~~~~-----~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~--g 454 (626)
.... .+........+. ..|+++.|+.+| -.+++|+.+|.|.|||++.....+ +.+...-+|..+.|-+. +
T Consensus 208 srv~-~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 208 SRVG-TLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhe-eeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 5432 232222222222 349999999997 789999999999999998544433 34556778999999765 4
Q ss_pred CEEEEEeCCccEEEEECCCCCCC
Q 006909 455 KHIISIGDDCRVYVWNYDELCFP 477 (626)
Q Consensus 455 ~~l~s~s~dg~I~iwd~~~~~~~ 477 (626)
+.|++. +...++|||-.++...
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGKPM 307 (703)
T ss_pred ceEEec-chHHhhhcccccCCce
Confidence 555554 4578999999987443
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=5.4e-10 Score=105.03 Aligned_cols=253 Identities=15% Similarity=0.161 Sum_probs=174.6
Q ss_pred ccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeec
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 249 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (626)
.+.+.+.++||.+.|+....-|-..-+.+.+.|.+++||--.+...
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q---------------------------------- 58 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ---------------------------------- 58 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc----------------------------------
Confidence 3445677889999999999999888899999999999996443110
Q ss_pred CCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC----CCeeeEee-cCCCCeEEEEEeeCCCCE
Q 006909 250 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG----CNQCLNVF-DHHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 250 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~----~~~~~~~~-~~~~~v~~~~~~p~~~~~ 323 (626)
.- .........+++++.+.+.. .|+.+-..|++.-+.+. .....+.. .|...+..+-|+. ....
T Consensus 59 --------~w-psI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~ 128 (404)
T KOG1409|consen 59 --------YW-PSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEW 128 (404)
T ss_pred --------cC-chhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC-Ccee
Confidence 00 01112345788899998876 78888888988887553 22333333 4889999999988 7888
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 324 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
+++.+.|..+.---.+.+..+.-.......+++.+.-. +..+|...|.+..-.+....+.. ..+...|.+.++
T Consensus 129 V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~-----i~~~~~h~~~~~ 201 (404)
T KOG1409|consen 129 VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQL-----ITTFNGHTGEVT 201 (404)
T ss_pred EEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCce-----EEEEcCcccceE
Confidence 99999887665333333332211111111111222111 55667777777666554333322 223455679999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 404 GIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+++|.+.. .+++++..|..+.+||+. .....+....|...|..+..-+.-+.+++++.||.|-+|+.+..
T Consensus 202 ~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 202 CLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 99999985 799999999999999975 33344555568888988888888899999999999999999865
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.25 E-value=2.1e-09 Score=106.18 Aligned_cols=324 Identities=14% Similarity=0.125 Sum_probs=194.6
Q ss_pred CccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC---------------
Q 006909 267 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--------------- 331 (626)
Q Consensus 267 h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg--------------- 331 (626)
..-++..+.|||.|.++....-..|.+|.-..+..+..+.|. .|..+.|+| .+++|.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHP-DVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeeeecC-CceecccCc-ccceeeeeccCCccChhhccCCccccC
Confidence 556889999999996555556667999999887777777665 489999999 999999865443
Q ss_pred cEEEEeCCCCeEEEeccCC-CC--eE-EEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE
Q 006909 332 KVRIWGVCEKRVVDWADVR-DV--IS-AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 407 (626)
Q Consensus 332 ~v~iwd~~~~~~~~~~~~~-~~--i~-~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 407 (626)
.+.+||+.++.++...... .+ .. -+.|+.+.+++|-. ....++|+++ +...... .+. ......|....|
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~--p~~---~lr~~gi~dFsi 181 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEH--PFK---NLRPVGILDFSI 181 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccC--chh---hccccceeeEEe
Confidence 4999999999988644332 22 22 57888888877655 4457999997 3332211 111 111357888999
Q ss_pred cCCC-CcEEEE-----EeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEe-----------CCccEEE
Q 006909 408 SRDE-SQRIMI-----TSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIG-----------DDCRVYV 468 (626)
Q Consensus 408 s~~~-~~~l~~-----~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s-----------~dg~I~i 468 (626)
+|.+ ...|+. ....+.+++|.+... +..-.. ....-..+.|.+.|++|+.-- ...++++
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--EeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 9974 222333 355678999986521 111111 122234678899998876421 1357888
Q ss_pred EECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcccCCCcccCCccccCC
Q 006909 469 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSND 548 (626)
Q Consensus 469 wd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~s~d 548 (626)
+++.....+...... +.+...+|.|.+..+..+.+-. .......+. .+.-.....+..-..+.|||.
T Consensus 260 ~~~~e~~i~V~~~~~-----------~pVhdf~W~p~S~~F~vi~g~~-pa~~s~~~l-r~Nl~~~~Pe~~rNT~~fsp~ 326 (561)
T COG5354 260 LRITERSIPVEKDLK-----------DPVHDFTWEPLSSRFAVISGYM-PASVSVFDL-RGNLRFYFPEQKRNTIFFSPH 326 (561)
T ss_pred Eeecccccceecccc-----------ccceeeeecccCCceeEEeccc-ccceeeccc-ccceEEecCCcccccccccCc
Confidence 988865333332222 3444555555555444333110 000000000 011111222223455679999
Q ss_pred CCcccccCCCC--CCCCCCCcccCCCCCCCChhhHHHHhhhccCCccccccccccceEEEEec------CCceEeeeeec
Q 006909 549 GPCRGSATWPA--EKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAG------CDGMIKTFHNY 620 (626)
Q Consensus 549 g~~l~s~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ivt~g------~Dg~Irvw~~~ 620 (626)
+++++.++.+. +.+.+||..... ...-.+....+....+++ ||+++-++. .|..|+|||++
T Consensus 327 ~r~il~agF~nl~gni~i~~~~~rf----------~~~~~~~~~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 327 ERYILFAGFDNLQGNIEIFDPAGRF----------KVAGAFNGLNTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred ccEEEEecCCccccceEEeccCCce----------EEEEEeecCCceEeeccC-CceEEEecCCCcccccCcceEEEEec
Confidence 99998876532 577888876541 001112223333334566 898877764 58899999999
Q ss_pred Ccccc
Q 006909 621 GLPIR 625 (626)
Q Consensus 621 g~p~~ 625 (626)
|-++.
T Consensus 396 g~~~f 400 (561)
T COG5354 396 GAKVF 400 (561)
T ss_pred Cchhh
Confidence 98864
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.3e-09 Score=109.72 Aligned_cols=139 Identities=15% Similarity=0.206 Sum_probs=114.3
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEE
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAI 356 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i 356 (626)
.++-|...|.|.+|++..|+....+. |.+.|.++.++. +-..|.+++.|+.+..|+...+.... +...+..+.++
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 68888899999999999999988874 899999999998 88899999999999999999888665 56677789999
Q ss_pred EEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC-----CCcEEEEEeCCCcEEEEeC
Q 006909 357 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD-----ESQRIMITSEDSKLRILDG 429 (626)
Q Consensus 357 ~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-----~~~~l~~~s~dg~i~iwd~ 429 (626)
+++|||+.+++++ +.|++||+++.+.... ..+|.++|.+++|.-+ |..+|.+...+..+.+|-.
T Consensus 151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~-------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 151 CISPDGKILLTAS--RQIKVLDIETKEVVIT-------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred EEcCCCCEEEecc--ceEEEEEccCceEEEE-------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 9999999998876 5899999998876432 4445799999999776 5344445555666777753
No 252
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.23 E-value=1.8e-09 Score=106.73 Aligned_cols=319 Identities=16% Similarity=0.160 Sum_probs=188.6
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
-.-++..++|||.|.+|++....| |.+|.-.....
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~-------------------------------------------- 65 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAK-------------------------------------------- 65 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhh--------------------------------------------
Confidence 345788999999999999987766 88997665321
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCC---------------CcEEEeccCCCeeeEeec-CCCC--eE-EEEEeeC
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMD---------------KTVRMWQVGCNQCLNVFD-HHNY--VT-CVQFNPI 319 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d---------------~~v~iwd~~~~~~~~~~~-~~~~--v~-~~~~~p~ 319 (626)
+..+ ....|..+.|+|.+ +|.+-+.. ..+.+||+.++..+..+. ...+ .+ -+.|+-
T Consensus 66 -l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~- 141 (561)
T COG5354 66 -LVRF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI- 141 (561)
T ss_pred -eeee--ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-
Confidence 1111 12457777777776 66654332 359999999999999885 2222 33 567877
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEE--eccC-CCCeEEEEEeeCC--CEEEE-----EecCCcEEEEEcCCCceeeeEE
Q 006909 320 DDNYFISGSIDGKVRIWGVCEKRVVD--WADV-RDVISAICYIPDG--KGFIV-----GSITGTCHFYKASGNDLKLEKV 389 (626)
Q Consensus 320 ~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~-~~~i~~i~~sp~g--~~l~~-----g~~dg~i~i~d~~~~~~~~~~~ 389 (626)
+.++++-. ....++|+++ ++.... .... ...|....|+|.+ ..|+. +...+.+++|.+..+.......
T Consensus 142 ~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~ 219 (561)
T COG5354 142 DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN 219 (561)
T ss_pred cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee
Confidence 77766554 3457999997 443332 1222 3568888899964 33444 4567789999988555443322
Q ss_pred eeccccccCCCCeEEEEEcCCCCcEEEEEe----------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEE
Q 006909 390 DFHDRKKTSGNKITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS 459 (626)
Q Consensus 390 ~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 459 (626)
-+. ..-..+.|.+.|..+++-.- ....++|+++...-..... ...++|...+|.|.++.+++
T Consensus 220 lfk-------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~v 291 (561)
T COG5354 220 LFK-------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAV 291 (561)
T ss_pred eEe-------ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeE
Confidence 221 22346778888743333221 1256788886632222221 35789999999999887665
Q ss_pred Ee--CCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCCCCcc-cCC
Q 006909 460 IG--DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWI-RDS 536 (626)
Q Consensus 460 ~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~~~~~-~~~ 536 (626)
.+ .+..+-++|+.+...-.. .........|+|.+.++.++ .-+.+.+.+-+|+........ .-.
T Consensus 292 i~g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fsp~~r~il~a-----------gF~nl~gni~i~~~~~rf~~~~~~~ 358 (561)
T COG5354 292 ISGYMPASVSVFDLRGNLRFYF--PEQKRNTIFFSPHERYILFA-----------GFDNLQGNIEIFDPAGRFKVAGAFN 358 (561)
T ss_pred EecccccceeecccccceEEec--CCcccccccccCcccEEEEe-----------cCCccccceEEeccCCceEEEEEee
Confidence 54 678999999987511111 11111223455555554443 333333334444442211111 001
Q ss_pred CcccCCccccCCCCcccccC-----CCCCCCCCCCcccC
Q 006909 537 ERFSLGSWFSNDGPCRGSAT-----WPAEKLPLWDVTID 570 (626)
Q Consensus 537 ~~~~~~~~~s~dg~~l~s~~-----~~d~~i~vwd~~~~ 570 (626)
+....-..|||||+++.+++ ..|..|.+|++...
T Consensus 359 ~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 359 GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 11123346999999776653 23557889988754
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=8.6e-09 Score=107.74 Aligned_cols=203 Identities=11% Similarity=0.081 Sum_probs=124.6
Q ss_pred eeccCccceEEEEEcCCC-e--EE-EEeCCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC-CC----
Q 006909 263 ELHGHKGDVLDLAWSNSN-Y--LL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-DG---- 331 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~-~--l~-s~s~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-dg---- 331 (626)
.+......+..-+|+||| . ++ +...++ .|.+.++.+++........+.....+|+| +|+.|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di 257 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRYGNPDL 257 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCCCCcce
Confidence 344445556777999997 3 32 444443 57777888887665555556666789999 9988876653 22
Q ss_pred cEEEEeCCC---CeEEEeccC-CCCeEEEEEeeCCCEEEEEe-cCCcEEEEE--cCCCceeeeEEeeccccccCCCCeEE
Q 006909 332 KVRIWGVCE---KRVVDWADV-RDVISAICYIPDGKGFIVGS-ITGTCHFYK--ASGNDLKLEKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 332 ~v~iwd~~~---~~~~~~~~~-~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~~~i~~ 404 (626)
.+.+|++.. +....+... .......+|+|||+.|+..+ .+|...+|. +.........+... ...+..
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~------~~~~~~ 331 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK------YRNSSC 331 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC------CCCccc
Confidence 344467654 333333333 23456789999999888765 466555554 43211111112111 245678
Q ss_pred EEEcCCCCcEEEEEeC-C--CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC---CccEEEEECCCC
Q 006909 405 IQFSRDESQRIMITSE-D--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYVWNYDEL 474 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~---dg~I~iwd~~~~ 474 (626)
..|+||| ++|+..+. + ..|.+||+.......... ....+....|+|||++|+..+. ...|+++|+.++
T Consensus 332 p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 332 PAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred eeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 8999998 45555443 3 468999976443222111 2345677899999998875443 357889998875
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.18 E-value=3.2e-09 Score=108.18 Aligned_cols=281 Identities=15% Similarity=0.165 Sum_probs=162.4
Q ss_pred EEEEeCC----CcEEEecc--CCCeee--EeecCCCCeEEEEEeeCCCCEEEEEeC----CCcEEEEeCCC--CeEEE--
Q 006909 282 LLSCSMD----KTVRMWQV--GCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSI----DGKVRIWGVCE--KRVVD-- 345 (626)
Q Consensus 282 l~s~s~d----~~v~iwd~--~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~s~----dg~v~iwd~~~--~~~~~-- 345 (626)
++.|+.. +.|.+|++ .+++.. ..+........++++| ++++|+++.. ++.|..|.+.. +.+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4555555 68888887 444443 2233555677889999 8899988876 46888888765 34332
Q ss_pred -eccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEE---eecc----ccccCCCCeEEEEEcCCCCcEEE
Q 006909 346 -WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKV---DFHD----RKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 346 -~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~---~~~~----~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
..........++++|++++|+++. .+|.+.+|++.......... ...+ ..+.......++.|+|+|..+++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 222455667899999999999886 48999999998753333221 1111 11223456789999999844444
Q ss_pred EEeCCCcEEEEeCCcce------eeeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECC--CCCCCCCCccCCccc
Q 006909 417 ITSEDSKLRILDGVDVI------HKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYD--ELCFPSSKQKNSVRS 487 (626)
Q Consensus 417 ~~s~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~--~~~~~~~~~~~~~~~ 487 (626)
+.-....|.+|+..... ..+. .........+.|+|++++++...+ +++|.++++. ++............
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~- 238 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP- 238 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE-
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc-
Confidence 44455789999875322 1222 345567889999999999877664 6889999998 32110000000000
Q ss_pred eeeeccCCcEEEEecCCCCcccccccCCCccccCccccc------cCCCCcccCCCcccCCccccCCCCcccccCCCCCC
Q 006909 488 CEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN------LETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEK 561 (626)
Q Consensus 488 ~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~------~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~ 561 (626)
..+......-+++.+|+|..|+......-. +...+. +.........+..-..++++|||++|+++...++.
T Consensus 239 -~~~~~~~~~~~i~ispdg~~lyvsnr~~~s--I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 239 -EGFTGENAPAEIAISPDGRFLYVSNRGSNS--ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp -TTSCSSSSEEEEEE-TTSSEEEEEECTTTE--EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred -ccccccCCceeEEEecCCCEEEEEeccCCE--EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 000011122344445555554433322110 000011 11111223334456788999999999988876788
Q ss_pred CCCCCcc
Q 006909 562 LPLWDVT 568 (626)
Q Consensus 562 i~vwd~~ 568 (626)
|.++++.
T Consensus 316 v~vf~~d 322 (345)
T PF10282_consen 316 VSVFDID 322 (345)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8888664
No 255
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=3.7e-08 Score=111.19 Aligned_cols=283 Identities=11% Similarity=0.213 Sum_probs=171.2
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceee-eecC-----CCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCK-SFTD-----DGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
-...|.+++||||+..||....+++|.+-.-. ...... .... ......++......|-....+.+.....+.
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p- 196 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP- 196 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC-
Confidence 35689999999999999999999988876432 111111 1111 111111222221222111111110000000
Q ss_pred ccccCCCceeeccCccceEEEEEcCCC-eEEEEeC---C---CcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEE
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---D---KTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~---d---~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~ 325 (626)
.........+. +...-..|+|-.|| ++++.+. . ..++||+-+ |....+-. -.+--.+++|.| .|+++|
T Consensus 197 -~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA 272 (928)
T PF04762_consen 197 -TVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIA 272 (928)
T ss_pred -CCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEE
Confidence 00000112233 55567789999999 6666553 2 579999977 55444333 223345789999 999999
Q ss_pred EEeC---CCcEEEEeCCCCeEEE----eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeecccccc
Q 006909 326 SGSI---DGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKT 397 (626)
Q Consensus 326 s~s~---dg~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~ 397 (626)
+... ...|.+|.-++-+--. .......|..+.|++++..|++...|. |.+|-..+...-.+ .+.+..
T Consensus 273 ~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~---- 347 (928)
T PF04762_consen 273 SSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS---- 347 (928)
T ss_pred EEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC----
Confidence 8765 3457777755433222 224456799999999999999987665 99999988776544 233322
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC------c--------ceeeeee---------------------cCCC
Q 006909 398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV------D--------VIHKFKG---------------------LPKS 442 (626)
Q Consensus 398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~------~--------~~~~~~~---------------------~~~~ 442 (626)
...+..+.|+|..+..|.+.+.+|.+..++.. . ....+.+ ..-.
T Consensus 348 -~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~ 426 (928)
T PF04762_consen 348 -SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELP 426 (928)
T ss_pred -CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCC
Confidence 13455599999877778888877776655411 0 0001100 1135
Q ss_pred CCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 443 GSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 443 ~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+|..++|++++..+++-..||.|.+|.....
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 68999999999988999999999999996654
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1.4e-07 Score=90.31 Aligned_cols=252 Identities=15% Similarity=0.195 Sum_probs=169.2
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCC---CcEEEEEcCC--CcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 178 QAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTS--VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 178 ~~H~~~V~~l~fspdg~~Latgs~D---g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
-++.+.++-|+|+|++++|.++-.+ |.|-.|.+.. +.....
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l---------------------------------- 81 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL---------------------------------- 81 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe----------------------------------
Confidence 3678889999999999999988654 6677777664 111100
Q ss_pred cccccCCCceeeccCccceEEEEEcCCC-eEEEEeC-CCcEEEeccCC-Cee---eEeecCCCC----------eEEEEE
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGC-NQC---LNVFDHHNY----------VTCVQF 316 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~-d~~v~iwd~~~-~~~---~~~~~~~~~----------v~~~~~ 316 (626)
......+ .+-..+++++++ +|+++.. .|.|.++-+.. |.. +..+.|.+. +.+..+
T Consensus 82 -------n~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~ 152 (346)
T COG2706 82 -------NRQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANF 152 (346)
T ss_pred -------eccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeee
Confidence 0111112 223778889988 6666554 57899998855 433 233445554 889999
Q ss_pred eeCCCCEEEEEeCC-CcEEEEeCCCCeEEE----eccCCCCeEEEEEeeCCCEEEEEec-CCcEEEEEcCCCceeeeEEe
Q 006909 317 NPIDDNYFISGSID-GKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVD 390 (626)
Q Consensus 317 ~p~~~~~l~s~s~d-g~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~~~~~ 390 (626)
.| +++++++.... -.|.+|++..+.+.. ..........|.|+|++++..+.++ +++|.+|........+..++
T Consensus 153 tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 153 TP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred CC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 99 99999887642 369999999877553 2244566889999999999887654 88999999987543333332
Q ss_pred ecccc---ccCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEeCCcc---eeeeee-cCCCCCeEEEEEcCCCCEEEEEeC
Q 006909 391 FHDRK---KTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVDV---IHKFKG-LPKSGSQMSASFTTTGKHIISIGD 462 (626)
Q Consensus 391 ~~~~~---~~~~~~i~~l~~s~~~~~~l~~~s~-dg~i~iwd~~~~---~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~ 462 (626)
..... -........|..++|| ++|.++.. ...|.++.+... ...... ..+........|+|.|++|+++..
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 22111 1223567789999998 56666544 357888875522 222222 223445788999999999999987
Q ss_pred C-ccEEEEECCCC
Q 006909 463 D-CRVYVWNYDEL 474 (626)
Q Consensus 463 d-g~I~iwd~~~~ 474 (626)
+ ..|.+|.++..
T Consensus 311 ~sd~i~vf~~d~~ 323 (346)
T COG2706 311 KSDNITVFERDKE 323 (346)
T ss_pred CCCcEEEEEEcCC
Confidence 5 57999988754
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=1.3e-09 Score=116.43 Aligned_cols=185 Identities=12% Similarity=0.173 Sum_probs=148.6
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeE-----EEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEEeccCCCC
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT-----CVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWADVRDV 352 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~-----~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~ 352 (626)
+..++.++.+..+.+||...+.......+...+. -+.+++ +.-++++|+.-+.|.+|+... .......+|.+.
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 3478888888999999999888777776555322 223455 667899999999999999864 334468899999
Q ss_pred eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC-c
Q 006909 353 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-D 431 (626)
Q Consensus 353 i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-~ 431 (626)
|.++.++-||+++++.+.|.++++|++.+.+... ...-+|..+|..+.|.|+ .+++++.|-+.++|+.. .
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~ 248 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------CTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGT 248 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccC------cccccccceeEEEEeccc---eeEEeccceEEEEEecccc
Confidence 9999999999999999999999999999877643 123345689999999997 89999999999999754 2
Q ss_pred ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 432 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
....+..+ ....+..++..++...++|++.|+.+++|++.+.
T Consensus 249 ~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 249 QLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 23344443 3567899999999999999999999999998654
No 258
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.13 E-value=1.1e-07 Score=93.21 Aligned_cols=172 Identities=16% Similarity=0.168 Sum_probs=132.6
Q ss_pred CCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC-cEEEEeCCCCeEEEeccCCCCeEEE
Q 006909 278 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG-KVRIWGVCEKRVVDWADVRDVISAI 356 (626)
Q Consensus 278 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~i~~i 356 (626)
+..+++..|. |.+.|.+...+-.+ .+++...|.-..+.- +++-++.|..|| .+-|+|..+++.......-+.|.++
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~i-qv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av 407 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSI-QVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAV 407 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeE-EcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEE
Confidence 4447777766 66777777655444 345666788888887 777899999999 8999999999999988999999999
Q ss_pred EEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEeCCcc
Q 006909 357 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS----KLRILDGVDV 432 (626)
Q Consensus 357 ~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg----~i~iwd~~~~ 432 (626)
..+|+|++++++.....+-++|+.++..... .+...+-|+.+.|+|++ +++|-+--+| .|+++|....
T Consensus 408 ~vs~dGK~~vvaNdr~el~vididngnv~~i-------dkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 408 KVSPDGKKVVVANDRFELWVIDIDNGNVRLI-------DKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEcCCCcEEEEEcCceEEEEEEecCCCeeEe-------cccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCC
Confidence 9999999999999999999999998876433 11223789999999997 7888877665 6899997643
Q ss_pred eeeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909 433 IHKFKGLPKSGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 433 ~~~~~~~~~~~~v~~~~~sp~g~~l~s~s 461 (626)
. .+......+.-.+-+|.|++++|.--+
T Consensus 480 K-iy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 480 K-IYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred e-EEEecCCcccccCcccCCCCcEEEEEe
Confidence 2 233322444556778999999987654
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=1.6e-08 Score=105.78 Aligned_cols=179 Identities=11% Similarity=0.032 Sum_probs=111.5
Q ss_pred CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCE--E-EEEeCCC--cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC
Q 006909 289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY--F-ISGSIDG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGK 363 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~--l-~s~s~dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~ 363 (626)
..|.+.|...+...........+..-+|+| +++. + ++...+| .|.+.++.+++...+....+......|+|||+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 357777877665544444555677889999 8864 2 2333333 58888999888777766677777889999999
Q ss_pred EEEEEec-CC----cEEEEEcCCCce-eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE--eCCc--c-
Q 006909 364 GFIVGSI-TG----TCHFYKASGNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD--V- 432 (626)
Q Consensus 364 ~l~~g~~-dg----~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw--d~~~--~- 432 (626)
.|+..+. +| .+..|++..+.. ....+.... .......+|+|||..++++...+|...|| ++.. .
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~-----~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA-----FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCC-----CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 8887653 23 233466654211 111111110 12345689999985444444456755555 4321 1
Q ss_pred eeeeeecCCCCCeEEEEEcCCCCEEEEEeCC---ccEEEEECCCCC
Q 006909 433 IHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELC 475 (626)
Q Consensus 433 ~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d---g~I~iwd~~~~~ 475 (626)
...+.. ....+....|||||++|+..+.+ ..|++||+.++.
T Consensus 319 ~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 319 PRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred eEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 222222 33466788999999999876643 479999998873
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.09 E-value=2.1e-08 Score=99.71 Aligned_cols=271 Identities=11% Similarity=0.025 Sum_probs=153.1
Q ss_pred CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC----------CCcEEEEeCCCCeEEEeccCCC-------
Q 006909 289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI----------DGKVRIWGVCEKRVVDWADVRD------- 351 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~------- 351 (626)
++|.+.|..+++.+.++........+ ++| +++.|+.+.. +..|.+||..+.+.+.......
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 78999999999999988754444455 999 8888777655 7899999999988876544322
Q ss_pred -CeEEEEEeeCCCEEEEEe-c-CCcEEEEEcCCCceeeeEEeeccc-cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 352 -VISAICYIPDGKGFIVGS-I-TGTCHFYKASGNDLKLEKVDFHDR-KKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 352 -~i~~i~~sp~g~~l~~g~-~-dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
....++++|||+++++.. . +..+.+.|+.+.+...+ +...+. .......-..+..+.||....++-..+|+...=
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~e-i~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRM-MDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEE-EeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 234789999999999876 3 68999999998876543 221110 000001111222334443222233333332210
Q ss_pred eCCcceeeeeecCCCCCe-EEEEEcC-CCCEEEEEeCCccEEEEECCCCCCCCCCccCCcc---ceeeeccCCcEEEEec
Q 006909 428 DGVDVIHKFKGLPKSGSQ-MSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR---SCEHFFSEGVSVAVQW 502 (626)
Q Consensus 428 d~~~~~~~~~~~~~~~~v-~~~~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~~~~g~~~av~~ 502 (626)
....+.. ...++ ..-.|++ +|+++....+ |+|++-|+.+............. .-..+.|.|... +++
T Consensus 184 ----~~~vf~~--~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~-ia~ 255 (352)
T TIGR02658 184 ----PTEVFHP--EDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ-VAY 255 (352)
T ss_pred ----eeeeecC--CccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee-EEE
Confidence 0011111 00000 0003455 8888887776 99999997654222111111000 011355655443 677
Q ss_pred CCCCcccccccCCCcc-------ccCccccccCCCC-cccCCCcccCCccccCCCC-cccccCCCCCCCCCCCcccC
Q 006909 503 PGIGTEQKSLCSSSLR-------DCSQKWDNLETAP-WIRDSERFSLGSWFSNDGP-CRGSATWPAEKLPLWDVTID 570 (626)
Q Consensus 503 s~~~~~l~~~~~~~~~-------~~~~~w~~~~~~~-~~~~~~~~~~~~~~s~dg~-~l~s~~~~d~~i~vwd~~~~ 570 (626)
++++..++.+...... ..+.+.+...... ....-+..+.+++++|||+ .+.+..+..+.|.+.|..++
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 7777777764321110 0111112211111 1112345678999999999 77666655678999998877
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.8e-08 Score=100.66 Aligned_cols=317 Identities=14% Similarity=0.192 Sum_probs=190.4
Q ss_pred ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC-----------CCcEEEEe
Q 006909 270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI-----------DGKVRIWG 337 (626)
Q Consensus 270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~-----------dg~v~iwd 337 (626)
.-+-+.|||-| +|+|--. .-|.+|--.+...++.|.|++ |.-+.|+| +.+||++=+. ...+.|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEec-cceeeecCccHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEE
Confidence 34678999999 6665544 458999888777788887765 88999999 9999998653 24699999
Q ss_pred CCCCeEEEeccC----CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909 338 VCEKRVVDWADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 338 ~~~~~~~~~~~~----~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
+++|.+...... ...-.-+.||.|++++|.-.. ..|.||+.....+. . .+......|....|+|.+ +
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~ll-d------~Kslki~gIr~FswsP~~-~ 359 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLL-D------KKSLKISGIRDFSWSPTS-N 359 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeee-c------ccccCCccccCcccCCCc-c
Confidence 999987653322 122334689999999998776 57899987653321 1 122223678899999985 5
Q ss_pred EEEEEeCC-----CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe----------CCccEEEEECCCCCCCC
Q 006909 414 RIMITSED-----SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG----------DDCRVYVWNYDELCFPS 478 (626)
Q Consensus 414 ~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s----------~dg~I~iwd~~~~~~~~ 478 (626)
+||-=... ..+.+..+......-...-+.-.-..+.|-.+|.+|+.-- .-..+-|+.+.....+.
T Consensus 360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv 439 (698)
T KOG2314|consen 360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV 439 (698)
T ss_pred eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence 55543221 2334443322111111100111223456777888887532 12245566665542221
Q ss_pred CCccCCccceeeeccCCcEEEEecCCCCcccccccCCCccccCccccccCC---CCcc-cCCCcccCCccccCCCCcccc
Q 006909 479 SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLET---APWI-RDSERFSLGSWFSNDGPCRGS 554 (626)
Q Consensus 479 ~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~~~~~~~~~~~~~w~~~~~---~~~~-~~~~~~~~~~~~s~dg~~l~s 554 (626)
...--...+++.+|-|.|..++.+.......++.+...-.. ..+. .-...+...+.|||.|++++.
T Consensus 440 ----------e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 440 ----------EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVV 509 (698)
T ss_pred ----------eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEE
Confidence 11222355788899999988887766555444443333211 1111 112245788899999998776
Q ss_pred cCCC--CCCCCCCCcccCCCCCCCChhhHHHHhhhccCCccc----cccccccceEEEEecC------CceEeeeeecCc
Q 006909 555 ATWP--AEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV----RAISATWGLVIVTAGC------DGMIKTFHNYGL 622 (626)
Q Consensus 555 ~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~dg~~ivt~g~------Dg~Irvw~~~g~ 622 (626)
+..- .+.+..+|.... ..+ ...+..|- ..+.| .|+|++|++. |.--|+|...|-
T Consensus 510 a~l~s~~g~l~F~D~~~a-----------~~k--~~~~~eh~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTDYA-----------DLK--DTASPEHFAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EEecccccceEEEecchh-----------hhh--hccCccccccccceECC-CCCEEEEeeehhhhccccceEEEEeecH
Confidence 5431 466777777643 111 22233332 23445 5999999874 444567776663
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.07 E-value=9.7e-09 Score=94.83 Aligned_cols=197 Identities=14% Similarity=0.166 Sum_probs=134.3
Q ss_pred ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE--ee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEE
Q 006909 270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVV 344 (626)
Q Consensus 270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~--~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~ 344 (626)
...++.|++.+ .++++-.+|.+.+-+........ .. .|.-+++.+.|+..+++.+++|+.|+.+..||++. ++.+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 34577888876 78888888998865554444333 33 38888999999887889999999999999999993 3222
Q ss_pred --EeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909 345 --DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 345 --~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
...-|...|.+|.-+| .+.++++|+.|-.|++||.++...++.... ..+.|..+.++|.-...+++++.-
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-------v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-------VGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-------cccceEEEEecchhhhHHHHHHHh
Confidence 2445778888888776 688999999999999999997665543222 237899999999754455556655
Q ss_pred CcEEEEeCCcceeee----e-ecCCCCCeEEEEEcCCCCEEEEEe-CCccEE-EEECCC
Q 006909 422 SKLRILDGVDVIHKF----K-GLPKSGSQMSASFTTTGKHIISIG-DDCRVY-VWNYDE 473 (626)
Q Consensus 422 g~i~iwd~~~~~~~~----~-~~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~-iwd~~~ 473 (626)
+-.+|.+..+....+ . ...|.+-.....|.....+|+|++ .|+.|+ +|-..+
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 666676654322211 1 122444455555544445677765 466654 665443
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=4.9e-07 Score=90.04 Aligned_cols=243 Identities=12% Similarity=0.090 Sum_probs=143.2
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 189 FSPDGRYLASGGE----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 189 fspdg~~Latgs~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
+||||+.|+.+.. +..|.+||..+.+.......+.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~----------------------------------- 97 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE----------------------------------- 97 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC-----------------------------------
Confidence 9999997777655 7889999999854422111110
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEe-C-CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCS-M-DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 335 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s-~-d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i 335 (626)
.|. +. .......++++|+| +|+... . +..|.+.|+.+++.+..+.-.....-...++ +..+ .-+.||....
T Consensus 98 ~p~--~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e-~~~~--~~~~Dg~~~~ 171 (352)
T TIGR02658 98 GPR--FL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN-DTFF--MHCRDGSLAK 171 (352)
T ss_pred Cch--hh-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC-CccE--EEeecCceEE
Confidence 000 00 12233467889998 555444 3 7899999999999999887555333333332 2222 2334555444
Q ss_pred EeCCC-CeEE-E---eccC-CCCe-EEEEEee-CCCEEEEEecCCcEEEEEcCCCceeee-EEeecccc----ccCCCCe
Q 006909 336 WGVCE-KRVV-D---WADV-RDVI-SAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRK----KTSGNKI 402 (626)
Q Consensus 336 wd~~~-~~~~-~---~~~~-~~~i-~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~----~~~~~~i 402 (626)
..+.. ++.. . .... ..++ ..-.|.+ +|+++.+... |+|.+.|+.+...... .+...... .-....+
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 33321 2111 0 1111 0000 0003456 8888888777 9999999765543322 22211100 1123445
Q ss_pred EEEEEcCCCCcEEEEEe---------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-EEEEEe-CCccEEEEEC
Q 006909 403 TGIQFSRDESQRIMITS---------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWNY 471 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s-~dg~I~iwd~ 471 (626)
.-++++|++.+.++... ..+.|.++|..+........ -...+..++++||++ +|++.. .++.|.+.|.
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 55999999854444332 22589999987655544433 345889999999999 887666 5788999999
Q ss_pred CCC
Q 006909 472 DEL 474 (626)
Q Consensus 472 ~~~ 474 (626)
.++
T Consensus 330 ~t~ 332 (352)
T TIGR02658 330 ETG 332 (352)
T ss_pred cCC
Confidence 886
No 264
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=1.4e-09 Score=116.11 Aligned_cols=147 Identities=24% Similarity=0.428 Sum_probs=125.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceeecc
Q 006909 187 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG 266 (626)
Q Consensus 187 l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (626)
+-++++.-++++|+.-+.|.+|+.... +.+. .+.|
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~d--------------------------------------------n~p~-~l~G 173 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHED--------------------------------------------NKPI-RLKG 173 (967)
T ss_pred EeccCcEEEEEeccccccEEEEecccc--------------------------------------------CCcc-eecc
Confidence 345667779999999999999998631 2222 6789
Q ss_pred CccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE--eecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909 267 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343 (626)
Q Consensus 267 h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~ 343 (626)
|.+.|..+.|+.+| +++++|.|.++++|++++.+... -|+|+..|..+.|.| + .+++++.|.+.++|+....++
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l 250 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQL 250 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEeccccee
Confidence 99999999999888 99999999999999999887765 568999999999998 4 999999999999998877776
Q ss_pred EEeccCC-CCeEEEEEeeCCCEEEEEecCCcEEEEEcCC
Q 006909 344 VDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKASG 381 (626)
Q Consensus 344 ~~~~~~~-~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~ 381 (626)
..+..|. ..|..++..++...+++++.||.+++|++.+
T Consensus 251 ~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 251 EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 6666664 5689999999999999999999999999864
No 265
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=2.1e-08 Score=103.81 Aligned_cols=261 Identities=14% Similarity=0.188 Sum_probs=172.3
Q ss_pred ccccccccccccCcEEEEEEcCCC------------CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeee
Q 006909 170 ALYTSQEIQAHKGCIWTLKFSPDG------------RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKF 237 (626)
Q Consensus 170 ~~~~~~~l~~H~~~V~~l~fspdg------------~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (626)
..+..+.+.-|+..|+.+.|.|-. -.||++...|.|.+||+..+
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~------------------------ 99 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA------------------------ 99 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh------------------------
Confidence 456778888999999999998731 26788888899999999862
Q ss_pred cCCCCCCceeecCCccccccCCCceeeccCccceEEEEEcCC-----CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCe
Q 006909 238 GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-----NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYV 311 (626)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-----~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v 311 (626)
..+..+..|..++.+++|-+. ..|++-....+|.+|+..+|+....+. .....
T Consensus 100 ---------------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 100 ---------------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL 158 (1062)
T ss_pred ---------------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence 334556678889999999752 267777777899999999999988876 45567
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEeCCC-------CeEEE-eccCCC------------C-------------eEEEEE
Q 006909 312 TCVQFNPIDDNYFISGSIDGKVRIWGVCE-------KRVVD-WADVRD------------V-------------ISAICY 358 (626)
Q Consensus 312 ~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-------~~~~~-~~~~~~------------~-------------i~~i~~ 358 (626)
.|+.+.|.+.+.+..-+..|.|.+-+.-. ++... ...|.+ . .-.++|
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 78999999999888888888888776532 22222 122211 0 113467
Q ss_pred eeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEeCCcceeeee
Q 006909 359 IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES-QRIMITSEDSKLRILDGVDVIHKFK 437 (626)
Q Consensus 359 sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~ 437 (626)
+|.-+.++.......+.++|++-..... .+.+.. +.+.-+.+-|++. ..|++...||.+.+|-.+..-..++
T Consensus 239 ~p~~rn~lfi~~prellv~dle~~~~l~-vvpier------~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~ 311 (1062)
T KOG1912|consen 239 SPHWRNILFITFPRELLVFDLEYECCLA-VVPIER------GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFK 311 (1062)
T ss_pred ChhhhceEEEEeccceEEEcchhhceeE-EEEecc------CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccc
Confidence 8877777777778899999998665433 333332 4455566766642 4688899999999997443222221
Q ss_pred ec-----------------CCCCCeEEEEEcCC-CCEEEEEeCCccEEEEECCCCCCCCCCcc
Q 006909 438 GL-----------------PKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPSSKQK 482 (626)
Q Consensus 438 ~~-----------------~~~~~v~~~~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 482 (626)
.. ...-.+....-.|. ...++.--.+|.+.+|.+.++........
T Consensus 312 ~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s 374 (1062)
T KOG1912|consen 312 KPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRS 374 (1062)
T ss_pred ccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccc
Confidence 10 01111112222343 33344444578899999998754444433
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=4.9e-08 Score=97.57 Aligned_cols=232 Identities=14% Similarity=0.209 Sum_probs=144.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 263 (626)
Q Consensus 184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (626)
=+.+.|||-|.||+|--.-| |.+|-=.+ ...++.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~---------------------------------------------f~r~~R 246 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGES---------------------------------------------FDRIQR 246 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCcc---------------------------------------------HHHHHh
Confidence 45789999999999998877 88994332 111222
Q ss_pred eccCccceEEEEEcCCC-eEEEEeC-----------CCcEEEeccCCCeeeEeecC---CCCeE-EEEEeeCCCCEEEEE
Q 006909 264 LHGHKGDVLDLAWSNSN-YLLSCSM-----------DKTVRMWQVGCNQCLNVFDH---HNYVT-CVQFNPIDDNYFISG 327 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~~-~l~s~s~-----------d~~v~iwd~~~~~~~~~~~~---~~~v~-~~~~~p~~~~~l~s~ 327 (626)
+ .|. .|.-+.|||.. +|+|-+. ...++|||+.+|...+.|.. ...+. -..|+. +++++|-.
T Consensus 247 F-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm 323 (698)
T KOG2314|consen 247 F-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARM 323 (698)
T ss_pred c-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEe
Confidence 2 243 57888999976 8887542 25799999999999888853 22222 458888 99999887
Q ss_pred eCCCcEEEEeCCCCeEEEeccC-CCCeEEEEEeeCCCEEEEEecC-----CcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 328 SIDGKVRIWGVCEKRVVDWADV-RDVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~~~~~-~~~i~~i~~sp~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
.. ..|.||+..+-.++..... -..|....|+|.++.||--+.. ..+.+..+.+.+...... +. .-.
T Consensus 324 ~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n-lf------nVs 395 (698)
T KOG2314|consen 324 TG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN-LF------NVS 395 (698)
T ss_pred cc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc-ce------eee
Confidence 76 5699998876444433222 3568889999998877754322 234444444333221110 00 111
Q ss_pred eEEEEEcCCCCcEEEEEe----------CCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC---CccEEE
Q 006909 402 ITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYV 468 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~---dg~I~i 468 (626)
=..+.|..+| .+|+.-- .-..+.|+.++..........-...|...+|-|.|..+++-+. ..++.+
T Consensus 396 DckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsf 474 (698)
T KOG2314|consen 396 DCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSF 474 (698)
T ss_pred ccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeE
Confidence 2345566766 4544321 1123455555433222223334678899999999988776543 368999
Q ss_pred EECCC
Q 006909 469 WNYDE 473 (626)
Q Consensus 469 wd~~~ 473 (626)
|.+++
T Consensus 475 Y~~e~ 479 (698)
T KOG2314|consen 475 YAVET 479 (698)
T ss_pred EEeec
Confidence 99884
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=2.4e-07 Score=106.82 Aligned_cols=206 Identities=13% Similarity=0.142 Sum_probs=135.2
Q ss_pred cceEEEEEcCCC-eEEEE-eCCCcEEEeccCCCeeeEeec-----------------CCCCeEEEEEeeCCCCEEEEEeC
Q 006909 269 GDVLDLAWSNSN-YLLSC-SMDKTVRMWQVGCNQCLNVFD-----------------HHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 269 ~~V~~l~~s~~~-~l~s~-s~d~~v~iwd~~~~~~~~~~~-----------------~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
.....+++.+++ .|+.+ ...+.|+++|..++....... .-.....++++|.++.++++.+.
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 345788898765 55544 445789999987765432211 01234689999855666677777
Q ss_pred CCcEEEEeCCCCeEEEeccC---------------CCCeEEEEEeeCCCEEEE-EecCCcEEEEEcCCCceeeeEE----
Q 006909 330 DGKVRIWGVCEKRVVDWADV---------------RDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKLEKV---- 389 (626)
Q Consensus 330 dg~v~iwd~~~~~~~~~~~~---------------~~~i~~i~~sp~g~~l~~-g~~dg~i~i~d~~~~~~~~~~~---- 389 (626)
++.|++||..++.+..+.+. -.....|+++|+|+.|++ -+.++.|++||+.++......-
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 89999999987765433211 123567999999985554 4556899999988654321100
Q ss_pred ------eeccc----cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce-eeeeecC------------CCCCeE
Q 006909 390 ------DFHDR----KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLP------------KSGSQM 446 (626)
Q Consensus 390 ------~~~~~----~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~------------~~~~v~ 446 (626)
.+... .........+++++++| .++++-+.++.|++||..+.. ..+.+.+ .-....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 00000 00011235689999998 688888889999999976432 2222211 112567
Q ss_pred EEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 447 SASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 447 ~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
.++++++|+.+++-+.++.|++||+.++.
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 89999999998888899999999998763
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.02 E-value=2.9e-08 Score=93.67 Aligned_cols=199 Identities=13% Similarity=0.269 Sum_probs=146.0
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
-..+++++.+.++...|+.|-..|++.-+.+...-. ...
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----------------------------------------km~ 105 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----------------------------------------KMT 105 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----------------------------------------hcc
Confidence 467899999999999999999999998887654100 023
Q ss_pred CceeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909 260 PLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~ 338 (626)
..+....|...|..+.|+-. ..+++++.|+.+.---.+.+..+..+......+++.+.- . +.+.|...|.|.+-.+
T Consensus 106 ~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~-~--~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 106 FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA-L--YAFVGDHSGQITMLKL 182 (404)
T ss_pred hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee-E--EEEecccccceEEEEE
Confidence 35666789999999999854 489999999877655555555554444344444444433 2 5566666666655443
Q ss_pred ---CCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 339 ---CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 339 ---~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
.-+.+..+.+|.+.+.+++|.|....+.+|..|..+.+||+............+ ...|..+...+-- +.+
T Consensus 183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh------~~kV~~l~~~~~t-~~l 255 (404)
T KOG1409|consen 183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH------NDKVQALSYAQHT-RQL 255 (404)
T ss_pred eecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc------hhhhhhhhhhhhh-eee
Confidence 334566788999999999999999999999999999999998776654433333 3677777776664 689
Q ss_pred EEEeCCCcEEEEeC
Q 006909 416 MITSEDSKLRILDG 429 (626)
Q Consensus 416 ~~~s~dg~i~iwd~ 429 (626)
++++.||.|.+|+.
T Consensus 256 ~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 256 ISCGEDGGIVVWNM 269 (404)
T ss_pred eeccCCCeEEEEec
Confidence 99999999999974
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=7.5e-08 Score=87.87 Aligned_cols=188 Identities=13% Similarity=0.084 Sum_probs=130.4
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeecCC--CCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe--EE--EeccCCCCeE
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--VV--DWADVRDVIS 354 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~--~~--~~~~~~~~i~ 354 (626)
.+..++.|.++++.+++.+..-... |. -.+.++++++ ++.++++.+....|..|.+.... .. ......+.-.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF 207 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF 207 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee-eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence 5778889999999988754332222 22 2488999999 99999999999999999886532 22 2344556667
Q ss_pred EEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc-EEEEEeCCCcEEEEeCCcce
Q 006909 355 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ-RIMITSEDSKLRILDGVDVI 433 (626)
Q Consensus 355 ~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~l~~~s~dg~i~iwd~~~~~ 433 (626)
+.+|+.....+|+++.||++.|||++....+..... ..++.|.+.+..+.|++.|.. +|+..-.-+.+.+.|+++..
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s--strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS--STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhhhc--ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 889999999999999999999999998776554322 224457899999999986643 44555556889999988644
Q ss_pred eeeee--c------CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 434 HKFKG--L------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 434 ~~~~~--~------~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
..... . +....+....|+.++.-+.+.+++ .+.=|++..
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 32222 1 112336677777777666665543 355566554
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=5.4e-09 Score=117.07 Aligned_cols=187 Identities=18% Similarity=0.276 Sum_probs=148.9
Q ss_pred cCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe
Q 006909 266 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 342 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~ 342 (626)
.|-..|.++.-+|.. +.+||+.||.|++|....++.+..++ ....|+.+.|+. .|+.+..+..||.+.+|......
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCCcc
Confidence 345667777777765 89999999999999999998888775 447899999999 99999999999999999998777
Q ss_pred EEEeccCCCCeEEEEEeeCCCEEEEEe---cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909 343 VVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 419 (626)
Q Consensus 343 ~~~~~~~~~~i~~i~~sp~g~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s 419 (626)
......|....+.+.|-. ..+++++ .++.+.+||..-........ ..|...++++++.|.. +.|++|+
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~------~~H~~gaT~l~~~P~~-qllisgg 2355 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH------TCHDGGATVLAYAPKH-QLLISGG 2355 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee------eecCCCceEEEEcCcc-eEEEecC
Confidence 778888988888888876 4566643 46899999975433221111 3456899999999995 8999999
Q ss_pred CCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 420 EDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 420 ~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.+|.|++||++. .++.+.. ++ ...++++|+..|.|+||++...
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc
Confidence 999999999874 3333322 33 5778999999999999999875
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1e-07 Score=96.38 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=143.6
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeec----CCCCeEEEEEe------e-------------CCCCEEEEEeCCCcEEEEe
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFN------P-------------IDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~------p-------------~~~~~l~s~s~dg~v~iwd 337 (626)
+++....||.+++|+...++....|. ..+..++..|. | .+...++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 89999999999999999999888774 34455555553 1 1445688888899999999
Q ss_pred CCCCeEEEe---ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcE
Q 006909 338 VCEKRVVDW---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 414 (626)
Q Consensus 338 ~~~~~~~~~---~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 414 (626)
+..+++... ..|.+.|.++.++.+-..|.+++.|+.+..|+......... +... ...+.+++.+||| ..
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~-~~~~------~~~~~sl~is~D~-~~ 158 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI-WKEQ------KPLVSSLCISPDG-KI 158 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee-eccC------CCccceEEEcCCC-CE
Confidence 999987653 46889999999999999999999999999999987665332 2222 2578899999997 67
Q ss_pred EEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC-----CCEEEEE-eCCccEEEEECCC
Q 006909 415 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----GKHIISI-GDDCRVYVWNYDE 473 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-----g~~l~s~-s~dg~I~iwd~~~ 473 (626)
+++++ ++|++||+.+........+|.++|.+++|..+ |.+++++ ..+.-|.+|-+..
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 77776 58999998876665555669999999999876 6776654 3456788888775
No 272
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.98 E-value=5.2e-07 Score=83.92 Aligned_cols=189 Identities=15% Similarity=0.191 Sum_probs=114.6
Q ss_pred cceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--------CCCCeEEEEEeeCC-----CCEEEEEeCCCcEE
Q 006909 269 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPID-----DNYFISGSIDGKVR 334 (626)
Q Consensus 269 ~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~p~~-----~~~l~s~s~dg~v~ 334 (626)
..=..++|+||+ .|+.+...|+|+++|+....+. .+. ....|..+.|.+.. ...|++-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 345678999998 8888889999999999854332 221 33567777776522 23566677788887
Q ss_pred EEeCCCC---e---E--EEe-ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909 335 IWGVCEK---R---V--VDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 335 iwd~~~~---~---~--~~~-~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
-|-+..+ . . ..+ ......|.++.|+|..+.|++|+.... ..+. .......+++-
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-----------s~a~~~GLtaW 185 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-----------SKASSCGLTAW 185 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-----------ccccccCceEE
Confidence 7765321 1 1 112 234678999999999999988875432 0000 00111334444
Q ss_pred EEcCCCCcEEEEEeCCCcE-------EEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 406 QFSRDESQRIMITSEDSKL-------RILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i-------~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
..-.+.+.+..+.+.+..+ .+|.+.+...-.........|..|+.||||..||+...+|.|.+|++.+..
T Consensus 186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 4333333333332222211 223222111111112246789999999999999999999999999999863
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.6e-09 Score=107.57 Aligned_cols=246 Identities=13% Similarity=0.175 Sum_probs=164.1
Q ss_pred cccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc
Q 006909 175 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 254 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (626)
+.+.||+..|..++--.+.+-+++++.|.+|++|.+.......
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~------------------------------------- 771 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI------------------------------------- 771 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc-------------------------------------
Confidence 4567999999999877788899999999999999987511000
Q ss_pred cccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEeeC-CCCEEEEE-e
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPI-DDNYFISG-S 328 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p~-~~~~l~s~-s 328 (626)
-...+..++..|+.+|.++.|-.+. ++++ .|+.|++||.--++.+.... ..+.+..+..-|. +..+++.| +
T Consensus 772 -~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs 848 (1034)
T KOG4190|consen 772 -GTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS 848 (1034)
T ss_pred -ccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc
Confidence 0023456778899999999998776 5544 47889999988777766442 2223333333331 34444444 7
Q ss_pred CCCcEEEEeCCCCeEEE------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909 329 IDGKVRIWGVCEKRVVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 402 (626)
...+|+++|.+..+-.. ..+....+.+++..+.|++++++-.+|.|.+.|.+++.....-..+ ....
T Consensus 849 aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-------ecdl 921 (1034)
T KOG4190|consen 849 AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM-------ECDL 921 (1034)
T ss_pred chhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc-------cchh
Confidence 78899999999865332 2344566899999999999999999999999999988754321111 1222
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEE-EeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 403 TGIQFSRDESQRIMITSEDSKLRI-LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
..++- |.+ +.++....|.++.+ |...+.+..+...+...+..-+ -.-|.-|+++...+.+.+|.-
T Consensus 922 lqlaa-psd-q~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 922 LQLAA-PSD-QALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred hhhcC-chh-HHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEec
Confidence 22322 332 57888888888988 8866666655543222222111 123667777776677777753
No 274
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=2.7e-07 Score=88.40 Aligned_cols=277 Identities=12% Similarity=0.109 Sum_probs=162.2
Q ss_pred CCcEEEeccCCC----eeeEeecCCCCeEEEEEeeCCCCEEEEEeCC---CcEEEEeCCC--CeEEEe---ccCCCCeEE
Q 006909 288 DKTVRMWQVGCN----QCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE--KRVVDW---ADVRDVISA 355 (626)
Q Consensus 288 d~~v~iwd~~~~----~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d---g~v~iwd~~~--~~~~~~---~~~~~~i~~ 355 (626)
+.-|.+|++.+. ..+........++-++|+| +.++|.++-.+ |.|.-|.+.. |++... .....+.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 467999998732 2334445778899999999 88888887654 6677666553 665432 222334488
Q ss_pred EEEeeCCCEEEEEec-CCcEEEEEcCCCceeeeE--EeeccccccC----CCCeEEEEEcCCCCcEEEEEeC-CCcEEEE
Q 006909 356 ICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEK--VDFHDRKKTS----GNKITGIQFSRDESQRIMITSE-DSKLRIL 427 (626)
Q Consensus 356 i~~sp~g~~l~~g~~-dg~i~i~d~~~~~~~~~~--~~~~~~~~~~----~~~i~~l~~s~~~~~~l~~~s~-dg~i~iw 427 (626)
++++++|++++++.. .|.|.++-++........ ...+.....| ...+-...+.|++ ++|++..- -..|.+|
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y 172 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEE
Confidence 999999999888764 589999999764333222 2222111111 1226778899998 56665543 4689999
Q ss_pred eCCcceeeeee---cCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecC
Q 006909 428 DGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP 503 (626)
Q Consensus 428 d~~~~~~~~~~---~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s 503 (626)
+..+....... .........+.|+|++++....++ +++|-+|.++........-......-..|..+...-++.-+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 97643222111 134566788999999999988775 89999999987411000000000000112222233344445
Q ss_pred CCCcccccccCCCccccCccccc------cCCCCcccCCCcccCCccccCCCCcccccCCCCCCCCCCCcc
Q 006909 504 GIGTEQKSLCSSSLRDCSQKWDN------LETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVT 568 (626)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~~~w~~------~~~~~~~~~~~~~~~~~~~s~dg~~l~s~~~~d~~i~vwd~~ 568 (626)
++|..|+.+...-- ++....+ +.........+.+-....|+++|++|+.+......|.++...
T Consensus 253 ~dGrFLYasNRg~d--sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 253 PDGRFLYASNRGHD--SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCCEEEEecCCCC--eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 55555544332110 0000011 111222334445567778999999998888755677777443
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.96 E-value=2.8e-07 Score=85.32 Aligned_cols=201 Identities=10% Similarity=0.066 Sum_probs=140.4
Q ss_pred CccceEEEEEcC---CC--eEEEEeCCCcEEEeccCCCeeeEeec------CC-CCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 267 HKGDVLDLAWSN---SN--YLLSCSMDKTVRMWQVGCNQCLNVFD------HH-NYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 267 h~~~V~~l~~s~---~~--~l~s~s~d~~v~iwd~~~~~~~~~~~------~~-~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
-++.+..+.|.- ++ .++-+-..|.|.++..........+. .. ....++.|++ .+..++++..+|.+.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~-~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDIST-SGTKIFVSDSRGSIS 146 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeec-cCceEEEEcCCCcEE
Confidence 345677777762 23 56677778889998765444433332 11 1255788888 788888888899988
Q ss_pred EEeCCCCeE---EEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC
Q 006909 335 IWGVCEKRV---VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 335 iwd~~~~~~---~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
+-+.....+ ..+..|...+....|+. +.+.+.+|+.|+.+..||++....- .++ ..+.|...|.+|.-+|.
T Consensus 147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~----i~~-n~kvH~~GV~SI~ss~~ 221 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF----IWH-NSKVHTSGVVSIYSSPP 221 (339)
T ss_pred EEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce----eee-cceeeecceEEEecCCC
Confidence 665544433 34778888888888876 4468899999999999999833311 111 13344588999999987
Q ss_pred CCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC--EEEEEeCCccEEEEECCCC
Q 006909 411 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 411 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~s~s~dg~I~iwd~~~~ 474 (626)
.+.++++|+.|-.|++||+++..+.+......+.|..+.++|.-. .|+++ .-+-.+|-+.+..
T Consensus 222 ~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 222 KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDK 286 (339)
T ss_pred CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHH-HhcCceEEEeccc
Confidence 778999999999999999997766666555678999999998543 33333 3333566666554
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=2.9e-08 Score=101.82 Aligned_cols=250 Identities=16% Similarity=0.236 Sum_probs=169.4
Q ss_pred cccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCce
Q 006909 167 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 246 (626)
Q Consensus 167 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (626)
..+.+.+-|+|.||.+.|.-+.|+.+.+.|-|...+|.|.||-+-.+....
T Consensus 57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E----------------------------- 107 (1189)
T KOG2041|consen 57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE----------------------------- 107 (1189)
T ss_pred cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH-----------------------------
Confidence 345677889999999999999999999999999999999999887642210
Q ss_pred eecCCccccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEE
Q 006909 247 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI 325 (626)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 325 (626)
...-....+.|.+++|+.+| .++..-.||.|.+=.++.++....--.......+.|++ +...++
T Consensus 108 --------------EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~-D~~~~L 172 (1189)
T KOG2041|consen 108 --------------EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE-DLEQAL 172 (1189)
T ss_pred --------------HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecc-cHHHHH
Confidence 01111245678899999887 78888888888777666544322211222345789999 888888
Q ss_pred EEeCCCcEEEEeCCCCe--------EEE----eccCCCCeEEEEEe--------eCCCEEEEEecCCcEEEEEcCCCcee
Q 006909 326 SGSIDGKVRIWGVCEKR--------VVD----WADVRDVISAICYI--------PDGKGFIVGSITGTCHFYKASGNDLK 385 (626)
Q Consensus 326 s~s~dg~v~iwd~~~~~--------~~~----~~~~~~~i~~i~~s--------p~g~~l~~g~~dg~i~i~d~~~~~~~ 385 (626)
.+-.+|.+.+||....- .+. +......|..+.|. |+...|+++..+|.+.+..-.+...+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 88889999999986521 111 11222335556653 47789999999999988766554433
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC---------CcEEEEeC-CcceeeeeecCCCCCeEEEEEcCCCC
Q 006909 386 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---------SKLRILDG-VDVIHKFKGLPKSGSQMSASFTTTGK 455 (626)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d---------g~i~iwd~-~~~~~~~~~~~~~~~v~~~~~sp~g~ 455 (626)
.. +. . +..+.+..|+++| ..|++++.+ +.|.+|.. ......++. ....|++++|-..|-
T Consensus 253 vv-~d-t------gm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv--pg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 253 VV-VD-T------GMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV--PGSCITGLSWEGTGL 321 (1189)
T ss_pred eE-Ee-c------ccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhheEEEec--CCceeeeeEEcCCce
Confidence 22 11 1 2678999999998 688887654 35666663 244444444 456788888876665
Q ss_pred EEEEEeCCccEEEEECC
Q 006909 456 HIISIGDDCRVYVWNYD 472 (626)
Q Consensus 456 ~l~s~s~dg~I~iwd~~ 472 (626)
.++.+- |+.|++=++.
T Consensus 322 riA~Av-dsfiyfanIR 337 (1189)
T KOG2041|consen 322 RIAIAV-DSFIYFANIR 337 (1189)
T ss_pred EEEEEe-cceEEEEeec
Confidence 555542 4555554443
No 277
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.93 E-value=2.2e-08 Score=93.01 Aligned_cols=250 Identities=19% Similarity=0.342 Sum_probs=161.4
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
..+.|+++.|...|.|||||...|.|.+|.-.... .|. .+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~ce---------------------------------------yk 64 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GCE---------------------------------------YK 64 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeeccccc-ccc---------------------------------------hh
Confidence 44679999999999999999999999999765422 110 11
Q ss_pred CceeeccC------------ccceEEEEEcCC-C--eEEEEeCCCcEEEeccCCCe-------------------e----
Q 006909 260 PLQELHGH------------KGDVLDLAWSNS-N--YLLSCSMDKTVRMWQVGCNQ-------------------C---- 301 (626)
Q Consensus 260 ~~~~~~~h------------~~~V~~l~~s~~-~--~l~s~s~d~~v~iwd~~~~~-------------------~---- 301 (626)
....+++| ...|..+.|..+ + .++..+.|++|++|.+.... +
T Consensus 65 f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~ 144 (460)
T COG5170 65 FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST 144 (460)
T ss_pred hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCH
Confidence 12222222 356888888754 3 67888899999999864220 0
Q ss_pred --------------e-----Eee--cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC--C--eEEEeccCC-----C
Q 006909 302 --------------L-----NVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE--K--RVVDWADVR-----D 351 (626)
Q Consensus 302 --------------~-----~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~--~--~~~~~~~~~-----~ 351 (626)
+ +.+ .|.-.++++.|+. +...++++. |=.|.+|++.- + .++...+|. .
T Consensus 145 ~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLte 222 (460)
T COG5170 145 KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTE 222 (460)
T ss_pred HHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHH
Confidence 0 001 2556678889987 777777654 67899998753 1 233344433 4
Q ss_pred CeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCceee-----eEEeecc----ccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909 352 VISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKL-----EKVDFHD----RKKTSGNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 352 ~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~~~-----~~~~~~~----~~~~~~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
.|++..|+|. ...+.-.+..|.|++-|++...+-. ......+ -.......|..+.|+++| +++++ -.-
T Consensus 223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIls-Rdy 300 (460)
T COG5170 223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILS-RDY 300 (460)
T ss_pred HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEE-ecc
Confidence 5888999994 5667778889999999998433211 1010000 011123578899999997 45554 445
Q ss_pred CcEEEEeCC---cceeeeeecC----------CCCCe---EEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 422 SKLRILDGV---DVIHKFKGLP----------KSGSQ---MSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 422 g~i~iwd~~---~~~~~~~~~~----------~~~~v---~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
.+|+|||.+ .++.+...+. ....| ..+.||-|.+.+++|+..+..-||-..+
T Consensus 301 ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 301 LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 799999976 3444332211 11222 3578899999999999988888877544
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=5.4e-09 Score=117.07 Aligned_cols=193 Identities=18% Similarity=0.274 Sum_probs=136.0
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCC--ccc
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD--EVF 254 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 254 (626)
++.|-..|.+|.-+|.-.+.+||+.||.|++|....+...+..-+... .....+++...+.+...+.... ..|
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-----s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-----SRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-----chhhhhhhcccCCceeeeccCCceeec
Confidence 445667889999999999999999999999999877655433222211 1111222222222222222222 345
Q ss_pred cccCCCceeeccCccceEEEEEcCCCeEEEE---eCCCcEEEeccCCC--eeeEeecCCCCeEEEEEeeCCCCEEEEEeC
Q 006909 255 QIEESPLQELHGHKGDVLDLAWSNSNYLLSC---SMDKTVRMWQVGCN--QCLNVFDHHNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~s~~~~l~s~---s~d~~v~iwd~~~~--~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
+....+....+.|.....+..|-. ..++++ +.++.+.+||..-. ..+-...|.+.++++++.| ....|++|+.
T Consensus 2279 q~~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr 2356 (2439)
T KOG1064|consen 2279 QASPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGR 2356 (2439)
T ss_pred ccCCcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCC
Confidence 666778888889999999999977 445554 45788999997432 2222245999999999999 9999999999
Q ss_pred CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee
Q 006909 330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 385 (626)
Q Consensus 330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~ 385 (626)
+|.|++||++..+++..... ++ ...++++|+..|.++||++......
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchh
Confidence 99999999998776653332 33 5668999999999999999877543
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.89 E-value=4.1e-07 Score=104.86 Aligned_cols=201 Identities=16% Similarity=0.129 Sum_probs=130.6
Q ss_pred EEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEeecC---------------CCCeEEEEEeeCCCCEEEEEe-CCCcE
Q 006909 272 LDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDH---------------HNYVTCVQFNPIDDNYFISGS-IDGKV 333 (626)
Q Consensus 272 ~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~~~---------------~~~v~~~~~~p~~~~~l~s~s-~dg~v 333 (626)
..+++++. + .+++-+.++.|++||... ..+..+.. -.....+++++ +++.|+++. .++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 46778764 5 566667788899999864 44443321 12357889998 777665554 45679
Q ss_pred EEEeCCCCeEEEeccC-----------------CCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEe-----
Q 006909 334 RIWGVCEKRVVDWADV-----------------RDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVD----- 390 (626)
Q Consensus 334 ~iwd~~~~~~~~~~~~-----------------~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~----- 390 (626)
+++|+.++.+..+.+. -.....++++| ++..+++.+.++.|++||..++......-.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 9999988776543221 12346799999 566666677788999999876643211000
Q ss_pred eccc--cccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee-eee-c-------------------CCCCCeEE
Q 006909 391 FHDR--KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKG-L-------------------PKSGSQMS 447 (626)
Q Consensus 391 ~~~~--~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~-~-------------------~~~~~v~~ 447 (626)
..+. ..........++++|++..++++.+.++.|++||..+.... ..+ . ..-....+
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 0000 00112356789999998556677777899999997643211 110 0 00113468
Q ss_pred EEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 448 ASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 448 ~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++++++|+.+++-+.++.|++||..++
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 899999998888889999999998864
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.88 E-value=5.3e-06 Score=80.38 Aligned_cols=221 Identities=16% Similarity=0.184 Sum_probs=144.9
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceee
Q 006909 186 TLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 264 (626)
Q Consensus 186 ~l~fsp-dg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (626)
++.|.+ +|.++++--..+.|..|+..++.. ..+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----------------------------------------------~~~ 37 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----------------------------------------------EVI 37 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE----------------------------------------------EEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----------------------------------------------EEE
Confidence 567887 676777776788899999876321 111
Q ss_pred ccCccceEEEEEc-CCCeEEEEeCCCcEEEeccCCCeeeEeec------CCCCeEEEEEeeCCCCEEEEEeCC-------
Q 006909 265 HGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSID------- 330 (626)
Q Consensus 265 ~~h~~~V~~l~~s-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------~~~~v~~~~~~p~~~~~l~s~s~d------- 330 (626)
.. .. ...+++. +++.|+.+...+ +.++|..+++...... .....+.+++.| +|++.++....
T Consensus 38 ~~-~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 38 DL-PG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGID 113 (246)
T ss_dssp ES-SS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGG
T ss_pred ec-CC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccccc
Confidence 11 11 6677777 778777777755 5555998886654443 234688999999 99977776543
Q ss_pred -CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEE-EEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEE
Q 006909 331 -GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF 407 (626)
Q Consensus 331 -g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~ 407 (626)
|.|..++.. ++.......-...+.|+|+|+++.|+ +-+..+.|..|++........ ...+.. .....+..-.+++
T Consensus 114 ~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~pDG~~v 191 (246)
T PF08450_consen 114 PGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-FPGGPGYPDGLAV 191 (246)
T ss_dssp SEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSSSCEEEEEEE
T ss_pred ccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-cCCCCcCCCcceE
Confidence 557778877 56555555566788999999999776 456678899999875443121 111111 1111134788999
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCC-cceeeeeecCCCCCeEEEEE-cCCCCEEEEEe
Q 006909 408 SRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASF-TTTGKHIISIG 461 (626)
Q Consensus 408 s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~-sp~g~~l~s~s 461 (626)
..+| +++++....+.|.+++.. +....+... ...+++++| .++.+.|+..+
T Consensus 192 D~~G-~l~va~~~~~~I~~~~p~G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 192 DSDG-NLWVADWGGGRIVVFDPDGKLLREIELP--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp BTTS--EEEEEETTTEEEEEETTSCEEEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred cCCC-CEEEEEcCCCEEEEECCCccEEEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence 9998 677777789999999976 333444432 348999999 46766665543
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.88 E-value=5.7e-07 Score=93.31 Aligned_cols=184 Identities=10% Similarity=-0.006 Sum_probs=114.3
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeE----
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS---- 354 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~---- 354 (626)
++.++.++.++.+..+|..+|+.+........+.+.-.. .+..++.++.++.|+.||..+++.+-.........
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 467888889999999999999988877654444332222 34567778889999999999887654332222111
Q ss_pred --EEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc-cCCCC---e-EEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 355 --AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-TSGNK---I-TGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 355 --~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~---i-~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
+... .+..++++..+|.+..+|..+++...... ...... ..... + ....+. + ..+++++.+|.+..|
T Consensus 183 ~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p~~~-~--~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 183 SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDPVVD-G--GQVYAVSYQGRVAAL 256 (377)
T ss_pred CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCccEEE-C--CEEEEEEcCCEEEEE
Confidence 1111 13477888889999999998876543311 110000 00000 0 111121 2 378888889999999
Q ss_pred eCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 428 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 428 d~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
|..+........ . ....... ..+..|+.++.||.|+.+|..++
T Consensus 257 d~~tG~~~W~~~-~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 257 DLRSGRVLWKRD-A-SSYQGPA--VDDNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred ECCCCcEEEeec-c-CCccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence 987665444432 1 1111122 34678888888999999999876
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.88 E-value=1.1e-06 Score=99.50 Aligned_cols=243 Identities=12% Similarity=0.205 Sum_probs=155.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
...+.|.++.|-++...|+.+..+|.|.+....... ..
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~------------------------------------------~~ 110 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDP------------------------------------------DE 110 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC------------------------------------------CC
Confidence 345789999999999999999999999988332100 01
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC---------------CCeee--------Eeec--------
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---------------CNQCL--------NVFD-------- 306 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~---------------~~~~~--------~~~~-------- 306 (626)
..+.....-...|.+++||||+ .|+..+.+++|.+..-. ..+.+ ..|.
T Consensus 111 ~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa 190 (928)
T PF04762_consen 111 DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAA 190 (928)
T ss_pred ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhh
Confidence 1122333346789999999998 77777777887765311 00111 1110
Q ss_pred -----------------CCCCeEEEEEeeCCCCEEEEEeC---C---CcEEEEeCCCCeEEEec-cCCCCeEEEEEeeCC
Q 006909 307 -----------------HHNYVTCVQFNPIDDNYFISGSI---D---GKVRIWGVCEKRVVDWA-DVRDVISAICYIPDG 362 (626)
Q Consensus 307 -----------------~~~~v~~~~~~p~~~~~l~s~s~---d---g~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g 362 (626)
....-..++|-. ||.+||+.+. . ..+|||+-. |.+.... ...+--.+++|.|.|
T Consensus 191 ~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG 268 (928)
T PF04762_consen 191 RQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG 268 (928)
T ss_pred hhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC
Confidence 112345678888 9999998875 2 479999976 5544322 333445678999999
Q ss_pred CEEEEEec---CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce----ee
Q 006909 363 KGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----HK 435 (626)
Q Consensus 363 ~~l~~g~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~----~~ 435 (626)
++||+... ...|.+|.-++-+..--.+.. ......|..+.|++++ ..|++...|. |.+|-..+.. +.
T Consensus 269 ~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~----~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqe 342 (928)
T PF04762_consen 269 NLIASSQRLPDRHDVVFFERNGLRHGEFTLRF----DPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQE 342 (928)
T ss_pred CEEEEEEEcCCCcEEEEEecCCcEeeeEecCC----CCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence 99988765 346677765543322112221 1234689999999997 6777766555 9999877532 22
Q ss_pred eeecCCCCCeEEEEEcCCC-CEEEEEeCCccEEEEECC
Q 006909 436 FKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 436 ~~~~~~~~~v~~~~~sp~g-~~l~s~s~dg~I~iwd~~ 472 (626)
+.. .....+..+.|+|.. ..|...+.+|.+..+++.
T Consensus 343 i~~-~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 343 IRF-SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred EEc-cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 222 233445569999965 446667766877776654
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.86 E-value=1.1e-06 Score=86.48 Aligned_cols=246 Identities=10% Similarity=0.135 Sum_probs=163.4
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDG-VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
+|.+.|.-..+..+++-++.|..|| .+-|+|..++.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e------------------------------------------- 393 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE------------------------------------------- 393 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-------------------------------------------
Confidence 7889999999999999999999999 89999988642
Q ss_pred CCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC----
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG---- 331 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg---- 331 (626)
++.+.+.-+.|.++..+++| .++.+-....+.+.|++++.....-+ ..+-|+.+.|+| +++.+|-+--+|
T Consensus 394 ---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq 469 (668)
T COG4946 394 ---VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQ 469 (668)
T ss_pred ---EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeee
Confidence 44555667889999999998 57777777888889999887644332 556799999999 999999876665
Q ss_pred cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-------CCcEEEEEcCCCceeeeEEeeccc----------
Q 006909 332 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-------TGTCHFYKASGNDLKLEKVDFHDR---------- 394 (626)
Q Consensus 332 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-------dg~i~i~d~~~~~~~~~~~~~~~~---------- 394 (626)
.|+++|+.+++..........=.+-+|.|++++|..-+. |..+.=+....-..+.......+.
T Consensus 470 ~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~ 549 (668)
T COG4946 470 SIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDE 549 (668)
T ss_pred eEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchh
Confidence 589999999999887777777778889999998876543 222222221111111100000000
Q ss_pred ccc---------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC---------------cceeeeee-----cCCCCCe
Q 006909 395 KKT---------SGNKITGIQFSRDESQRIMITSEDSKLRILDGV---------------DVIHKFKG-----LPKSGSQ 445 (626)
Q Consensus 395 ~~~---------~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~---------------~~~~~~~~-----~~~~~~v 445 (626)
... ....+.-+-..+ +...-+++-.+|.|.++... ..+..+.. ..-...+
T Consensus 550 ~~~ea~e~dle~ie~r~eP~pVee-~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nv 628 (668)
T COG4946 550 ANSEAGEVDLEGIEDRVEPFPVEE-GDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNV 628 (668)
T ss_pred cCccccceehhhhcccccccccCc-cceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHHhccc
Confidence 000 000111111111 22445566666666666421 01111111 1123578
Q ss_pred EEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 446 MSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 446 ~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
.++..|+|+..|+. -.||.+++++++.
T Consensus 629 ss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 629 SSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred ceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 89999999999998 7899999999986
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=1.2e-06 Score=91.01 Aligned_cols=191 Identities=12% Similarity=0.150 Sum_probs=124.0
Q ss_pred ceEEEEEcCCC-e-EEEEeCC---CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE-eCC--CcEEEEeCCCC
Q 006909 270 DVLDLAWSNSN-Y-LLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SID--GKVRIWGVCEK 341 (626)
Q Consensus 270 ~V~~l~~s~~~-~-l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~d--g~v~iwd~~~~ 341 (626)
.+....|+|+| . ++..+.+ ..|.++|+.+++........+......|+| +++.++.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 77889999998 3 5544433 568899999887766666666677788999 88766543 333 46888899888
Q ss_pred eEEEeccCCCCeEEEEEeeCCCEEEEEecC-C--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE
Q 006909 342 RVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 418 (626)
Q Consensus 342 ~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~ 418 (626)
....+...........|+|||+.|+..+.. | .|.++|+.++... .+...+ .. ...|+|+|..++++.
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--rlt~~g------~~--~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--QVVFHG------KN--NSSVSTYKNYIVYSS 337 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE--eCccCC------Cc--CceECCCCCEEEEEE
Confidence 877766655545567899999988876643 3 5777777765542 122111 11 248999985444444
Q ss_pred eCC--------CcEEEEeCCcce-eeeeecCCCCCeEEEEEcCCCCEEEEEeCC---ccEEEEECCCC
Q 006909 419 SED--------SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL 474 (626)
Q Consensus 419 s~d--------g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d---g~I~iwd~~~~ 474 (626)
... ..|.+.|+.... ..+.. ........|+|||+.|+..+.+ ..+.+.+++..
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYIRRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCeEECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 332 367778865332 22222 1233358899999988776643 24666676653
No 285
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=1.9e-08 Score=103.45 Aligned_cols=199 Identities=18% Similarity=0.309 Sum_probs=140.2
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
-.+++.++..+|.|+-+|.++.-| +.+-|+... ..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p--------------------------------------------~~ 57 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDP--------------------------------------------FT 57 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCC--------------------------------------------CC
Confidence 356788999999999999999877 566677652 12
Q ss_pred Cceeec-cCccceEEEEEcCCC---eEEEEeCCCcEEEeccCC--CeeeE--eecCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 260 PLQELH-GHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGC--NQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 260 ~~~~~~-~h~~~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~--~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
+..-+. --.-.|-.+.|++.. +-+.......-.+|++.. .+.+. ..+|...|+.+.|+|.....+++++.|.
T Consensus 58 ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt 137 (1081)
T KOG0309|consen 58 PPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT 137 (1081)
T ss_pred CceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccc
Confidence 222221 112346667777532 333333344566788742 23333 2368899999999998889999999999
Q ss_pred cEEEEeCCCCe--EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 332 KVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 332 ~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
.|..||+++.. +..+..-....+.+.|+.....+.+.+....|.+||++.+..+...+.. |...|..+.|..
T Consensus 138 ~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~------~vs~vn~~~fnr 211 (1081)
T KOG0309|consen 138 YVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG------HVSSVNSIDFNR 211 (1081)
T ss_pred cceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc------cceeeehHHHhh
Confidence 99999998754 3345555677788999986666777788889999999987766543332 346788888876
Q ss_pred CCCcEEEEEeCCCcEEEEeC
Q 006909 410 DESQRIMITSEDSKLRILDG 429 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~ 429 (626)
--...+++.+.|++|+.||.
T Consensus 212 ~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 212 FKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred hhhhhhcccCCCCceeeecc
Confidence 54457888999999999973
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=6.2e-07 Score=82.02 Aligned_cols=191 Identities=13% Similarity=-0.023 Sum_probs=129.7
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCC-CCeEE
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISA 355 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~i~~ 355 (626)
+++|+.|+.-|...+|...+.+..... .+...|+-+.=.-.....+..++.|.++++.++..+......... -.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 458999999999999999876654333 233333221111002234666788899999887654432211111 33889
Q ss_pred EEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee
Q 006909 356 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK 435 (626)
Q Consensus 356 i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~ 435 (626)
++++++++++++.+....|.+|.+.........+... .....-.+..|+... ..+|++..||++.|||++.....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a----~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA----PTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec----ccCCCceeeeeccCc-ceEEEEecCCcEEEEEecccccc
Confidence 9999999999999999999999997665443332211 112445677888876 68999999999999998743222
Q ss_pred -----eeecCCCCCeEEEEEcCCCC--EEEEEeCCccEEEEECCCC
Q 006909 436 -----FKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 436 -----~~~~~~~~~v~~~~~sp~g~--~l~s~s~dg~I~iwd~~~~ 474 (626)
-....|.+.+..+.|++-|. +|+..-.-+.+.+-|+.+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 12244889999999998663 4555555688999999886
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=1.2e-06 Score=90.97 Aligned_cols=191 Identities=10% Similarity=0.034 Sum_probs=118.0
Q ss_pred CcEEEEEEcCCCCE-EEEEeCC---CcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 182 GCIWTLKFSPDGRY-LASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 182 ~~V~~l~fspdg~~-Latgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
+.+....|||||+. ++..+.+ ..|.++|+.++..
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~------------------------------------------ 225 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK------------------------------------------ 225 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE------------------------------------------
Confidence 37889999999984 6644433 4588888876432
Q ss_pred CCCceeeccCccceEEEEEcCCC-eE-EEEeCC--CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC-C-
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID-G- 331 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~-~l-~s~s~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d-g- 331 (626)
..+....+......|+||| .+ ++.+.+ ..|.++|+.++.......+........|+| +++.|+..+.. +
T Consensus 226 ----~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~ 300 (419)
T PRK04043 226 ----EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGY 300 (419)
T ss_pred ----EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCC
Confidence 2222234455667899998 44 344434 457777888776554444443344568999 99887776642 3
Q ss_pred -cEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC---------CcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 332 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 332 -~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
.|.+.|+.+++.......... ...|+|+|+.++..... ..|.+.|+.++... .+... ..
T Consensus 301 ~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~~-------~~ 369 (419)
T PRK04043 301 PNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTAN-------GV 369 (419)
T ss_pred ceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCCC-------CC
Confidence 588889988877554432222 24899999998877654 26778888776532 11111 12
Q ss_pred eEEEEEcCCCCcEEEEEeCCCc--EEEEeCC
Q 006909 402 ITGIQFSRDESQRIMITSEDSK--LRILDGV 430 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~--i~iwd~~ 430 (626)
.....|+|||...+++....+. +.+.++.
T Consensus 370 ~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 370 NQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred cCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 2357899998544444433333 4455543
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=5.8e-08 Score=96.72 Aligned_cols=210 Identities=19% Similarity=0.252 Sum_probs=145.1
Q ss_pred CCCceeeccCccceEEEEEc-CCCeEEEEeCCCcEEEeccCC-------CeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909 258 ESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGC-------NQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s-~~~~l~s~s~d~~v~iwd~~~-------~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s 328 (626)
.-.+..+.||+..|..++-- +.+-+++++.|++|++|.++. ..|..++. |..+|..+.|.. +.+++++
T Consensus 725 ~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S-- 801 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS-- 801 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--
Confidence 33466788999999988654 446899999999999998853 23445553 999999999988 7777765
Q ss_pred CCCcEEEEeCCCCeEEE---eccCCCCeEEEEEee--CCCEEEEE-ecCCcEEEEEcCCCceeeeEEeeccccccCCCCe
Q 006909 329 IDGKVRIWGVCEKRVVD---WADVRDVISAICYIP--DGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 402 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~---~~~~~~~i~~i~~sp--~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i 402 (626)
.||.|.+||.--+++.. .....+.+..+..-| +...++.| +...+++++|.+......+-.... .......+
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn--a~~Pna~~ 879 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN--APGPNALT 879 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc--CCCCchhe
Confidence 47899999987666543 122223333333334 33444444 678899999998877654421111 22334678
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEE-EECCCC
Q 006909 403 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV-WNYDEL 474 (626)
Q Consensus 403 ~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~i-wd~~~~ 474 (626)
.+++..+.| ++++++-..|+|.+.|.++....-...+.......++ .|..+.|+....|.++-+ |..-++
T Consensus 880 R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 880 RAIAVADKG-NKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred eEEEeccCc-chhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 899999998 7999999999999999887654333322333333333 366778888888999988 887766
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=5.7e-07 Score=87.97 Aligned_cols=287 Identities=16% Similarity=0.133 Sum_probs=189.8
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
-|.+.|+.+.-+ -.+++.+++.||.++.|.-..... -
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG------------------------------------------v 43 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG------------------------------------------V 43 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc------------------------------------------e
Confidence 388888887655 356999999999999997543100 1
Q ss_pred CCceeeccCccceEEEEEcCCC-eEEEEeC-CCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCC----CEEEEEeCCCc
Q 006909 259 SPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD----NYFISGSIDGK 332 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~-d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~s~s~dg~ 332 (626)
+.+..+..|...|.+++.+-++ .+.|.+. |..++++|+++-..+..+........+.|....| ...++.-.++.
T Consensus 44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~ 123 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGK 123 (558)
T ss_pred eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCC
Confidence 2355667899999999999888 6667677 9999999998877665554333333334433123 22333445789
Q ss_pred EEEEeCCCCe---EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc-eeeeEEeecc-------ccccCCCC
Q 006909 333 VRIWGVCEKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-LKLEKVDFHD-------RKKTSGNK 401 (626)
Q Consensus 333 v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~~-------~~~~~~~~ 401 (626)
+.++|-.... .....-|..+|..+.++|.+..+++....|.|..|.....- .+...+.+.- ........
T Consensus 124 i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~ 203 (558)
T KOG0882|consen 124 IFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTE 203 (558)
T ss_pred cEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccC
Confidence 9999976543 23345678999999999999999999999999999987411 1111111100 01112356
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcc--eeee---------------ee----------------cCCCCCeEEE
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKF---------------KG----------------LPKSGSQMSA 448 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~--~~~~---------------~~----------------~~~~~~v~~~ 448 (626)
.+++.|+|+| ..+.+-+.|..|++++.... .+.+ .. ......-+.+
T Consensus 204 pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~ 282 (558)
T KOG0882|consen 204 PTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNA 282 (558)
T ss_pred ccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccccee
Confidence 7899999998 78898899999999974321 1100 00 0012344568
Q ss_pred EEcCCCCEEEEEeCCccEEEEECCCCCCCC--------------------------CCccCCccceeeeccCCcEEEEec
Q 006909 449 SFTTTGKHIISIGDDCRVYVWNYDELCFPS--------------------------SKQKNSVRSCEHFFSEGVSVAVQW 502 (626)
Q Consensus 449 ~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~--------------------------~~~~~~~~~~~~~~~~g~~~av~~ 502 (626)
.|...|++|+-|+-=| |+|.++.++.... ..........+.+.++-.+++++|
T Consensus 283 ~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~ 361 (558)
T KOG0882|consen 283 VFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAF 361 (558)
T ss_pred EEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeee
Confidence 8999999999887554 7777777652110 001112334445777788889999
Q ss_pred CCCCcccc
Q 006909 503 PGIGTEQK 510 (626)
Q Consensus 503 s~~~~~l~ 510 (626)
-.+.-+++
T Consensus 362 kk~rfylf 369 (558)
T KOG0882|consen 362 KKNRFYLF 369 (558)
T ss_pred ecceEEEE
Confidence 88888777
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.67 E-value=4.2e-08 Score=64.51 Aligned_cols=37 Identities=38% Similarity=0.869 Sum_probs=34.8
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 209 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd 209 (626)
+.+++++|++.|++|+|+|++.+|++|+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567899999999999999999999999999999997
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.66 E-value=9.4e-08 Score=88.92 Aligned_cols=236 Identities=13% Similarity=0.248 Sum_probs=141.8
Q ss_pred CcEEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcceeeeecC--CC-CCc---cCCCCCeeeecCCCCCCceeecCCcc
Q 006909 182 GCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTD--DG-GFG---SNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 182 ~~V~~l~fspdg~--~Latgs~Dg~i~iwd~~~~~~~~~~~~~--~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
..|..+.|-.++. .++..+.|.+|++|.+.......+.-.. ++ ... .......+...........+
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~ii------ 159 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEII------ 159 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEE------
Confidence 3577787765543 5555678999999998764322111000 00 000 00001111111111111111
Q ss_pred ccccCCCceee-ccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCe-eeEee---c-----CCCCeEEEEEeeCCCCE
Q 006909 254 FQIEESPLQEL-HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF---D-----HHNYVTCVQFNPIDDNY 323 (626)
Q Consensus 254 ~~~~~~~~~~~-~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~-~~~~~---~-----~~~~v~~~~~~p~~~~~ 323 (626)
...|.+.. ..|...|+++.|+.+...+.++.|-.|.+|+++-.. +.... . ...-|++..|+|...+.
T Consensus 160 ---aa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~ 236 (460)
T COG5170 160 ---AAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV 236 (460)
T ss_pred ---EeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce
Confidence 12233333 578999999999988755555677889999986322 22221 1 23458899999977777
Q ss_pred EEEEeCCCcEEEEeCCCCeEEE-----------------eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee
Q 006909 324 FISGSIDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 386 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~-----------------~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~ 386 (626)
+.-.+..|.|++-|++...+.. +......|..+.|+++|+++++-+ --++++||++..+.+.
T Consensus 237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pi 315 (460)
T COG5170 237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPI 315 (460)
T ss_pred EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCc
Confidence 8888889999999998543221 122235688899999999888754 3589999999888777
Q ss_pred eEEeecccccc------CCCCe---EEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909 387 EKVDFHDRKKT------SGNKI---TGIQFSRDESQRIMITSEDSKLRILD 428 (626)
Q Consensus 387 ~~~~~~~~~~~------~~~~i---~~l~~s~~~~~~l~~~s~dg~i~iwd 428 (626)
..+.++..... ....| ..+.|+.|. ..+++|+..+..-+|-
T Consensus 316 kTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp 365 (460)
T COG5170 316 KTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYP 365 (460)
T ss_pred eeechHHHHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeec
Confidence 76655432111 11222 246777775 6788888877766664
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.63 E-value=4.1e-07 Score=87.95 Aligned_cols=160 Identities=14% Similarity=0.159 Sum_probs=114.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909 183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 262 (626)
Q Consensus 183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (626)
.+..+..+|++++||.+..+....++++...... .+...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~-----------------------------------------~kl~~ 102 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKG-----------------------------------------AKLLD 102 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCc-----------------------------------------ceeee
Confidence 4556677888999998888887777777652110 01111
Q ss_pred ee--ccCccceEEEEEcCCCe-EEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909 263 EL--HGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 339 (626)
Q Consensus 263 ~~--~~h~~~V~~l~~s~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~ 339 (626)
.. ..-...+..+....... ...++....+.+|....+.+...++|-.-++.++|+| |+++++++..|..|++-...
T Consensus 103 ~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 103 VSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYP 181 (390)
T ss_pred EeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecC
Confidence 11 11223333343333332 2245566677788877788888889999999999999 99999999999999998776
Q ss_pred CCeEEE--eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee
Q 006909 340 EKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 385 (626)
Q Consensus 340 ~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~ 385 (626)
.--.+. ..+|+.-|..++.-++- .|++|+.|+++++||+.+++..
T Consensus 182 a~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 182 ATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred cccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcc
Confidence 544443 56799999999987654 5899999999999999988764
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.62 E-value=5.5e-07 Score=82.02 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=70.2
Q ss_pred cEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE--EeccCCCCeEEEEEee-CCCEE
Q 006909 290 TVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV--DWADVRDVISAICYIP-DGKGF 365 (626)
Q Consensus 290 ~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp-~g~~l 365 (626)
..+.|+++..+.+..- .....|++++-+|...+.+++|+.||.+-+||.+..... .+..|+.++..+-|+| ++..|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 3555655433222111 233459999999977888899999999999999876432 3667899999999999 67899
Q ss_pred EEEecCCcEEEEEcCC
Q 006909 366 IVGSITGTCHFYKASG 381 (626)
Q Consensus 366 ~~g~~dg~i~i~d~~~ 381 (626)
++++.||.+-.||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999875
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=2e-07 Score=88.16 Aligned_cols=146 Identities=15% Similarity=0.236 Sum_probs=112.0
Q ss_pred EEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEE
Q 006909 325 ISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 325 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 404 (626)
++.+.+-.|-+-|+.++....+. .+..|.++.|...++.+..|..+|.|..+|++....-.. + ..+...|+..|++
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~-~--~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG-W--CAQRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC-c--ceEEEEcCcchhh
Confidence 55566778999999888766554 777899999999999999999999999999986522110 0 0012224578999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCC--c---ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 405 IQFSRDESQRIMITSEDSKLRILDGV--D---VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~dg~i~iwd~~--~---~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
++.-.-..++|++.+.+|+|++||.+ + .+..+.+|.+...-.-+...+....|+++++|...+||.+..+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 88776223799999999999999976 2 3667777666555556667788899999999999999999976
No 295
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.56 E-value=3.1e-05 Score=80.30 Aligned_cols=177 Identities=12% Similarity=0.066 Sum_probs=109.0
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCC--------eEEEEEee-CCCCEEEEEeCCCcEEEEeCCCCeEEEeccC
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNP-IDDNYFISGSIDGKVRIWGVCEKRVVDWADV 349 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------v~~~~~~p-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 349 (626)
++.++.+..++.+..+|..+|+.+.......+ ...+.-+| ..+..++.++.+|.++.+|..+++..-....
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence 35778888889999999999987665431110 00010011 0346788888899999999998876543332
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909 350 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 429 (626)
Q Consensus 350 ~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~ 429 (626)
.. .... ...+..+++++.+|.+..+|..+++.......... ....+.... + ..+++++.+|.|+++|.
T Consensus 270 ~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~------~~~ssp~i~--g-~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 270 SS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKY------RQLTAPAVV--G-GYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccC------CccccCEEE--C-CEEEEEeCCCEEEEEEC
Confidence 21 1122 23567888889999999999988865433211111 112222222 3 48889999999999998
Q ss_pred CcceeeeeecCCCCCe-EEEEEcCCCCEEEEEeCCccEEEE
Q 006909 430 VDVIHKFKGLPKSGSQ-MSASFTTTGKHIISIGDDCRVYVW 469 (626)
Q Consensus 430 ~~~~~~~~~~~~~~~v-~~~~~sp~g~~l~s~s~dg~I~iw 469 (626)
.+.....+...+...+ .+..+. +..|+.++.||.|+.|
T Consensus 338 ~tG~~~~~~~~~~~~~~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 338 EDGSFVARLKTDGSGIASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCCEEEEEEcCCCccccCCEEE--CCEEEEEeCCceEEEe
Confidence 7655444433233222 222222 3458888899999876
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.56 E-value=4.6e-05 Score=73.41 Aligned_cols=192 Identities=16% Similarity=0.131 Sum_probs=122.6
Q ss_pred EcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe-ccCC----
Q 006909 276 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-ADVR---- 350 (626)
Q Consensus 276 ~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~---- 350 (626)
...++.+++++.++.|..||..+|+.+..+.....+...... .+..++.++.++.|+.+|..++++.-. ....
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccc
Confidence 335678888899999999999999998888644433222222 466777777888999999998887643 2211
Q ss_pred CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc-c---CCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909 351 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-T---SGNKITGIQFSRDESQRIMITSEDSKLRI 426 (626)
Q Consensus 351 ~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~---~~~~i~~l~~s~~~~~~l~~~s~dg~i~i 426 (626)
...........+..++++..++.+..+|+.+++....... ..... . ....+..-....++ .+++++.++.+.-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVA 187 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEE
Confidence 1223334444588999999999999999999887544222 21000 0 00112232333343 6777777775433
Q ss_pred EeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 427 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 427 wd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
+|..+........ ...+.. ...+++..|+.++.++.|++||+.++.
T Consensus 188 ~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 188 VDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred EECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 3988776555432 222222 135678888888899999999999873
No 297
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=8.7e-06 Score=85.01 Aligned_cols=246 Identities=13% Similarity=0.170 Sum_probs=162.2
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
|...-.++.|+|.| ++|-|+. ..|.+-|..+ .+
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s---------------------------------------------~q 46 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRS---------------------------------------------LQ 46 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehhh---------------------------------------------hh
Confidence 33346788999987 7777775 4577777765 45
Q ss_pred CceeeccCccceEEEEEcCC------------C-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeC--CC-C
Q 006909 260 PLQELHGHKGDVLDLAWSNS------------N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI--DD-N 322 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~------------~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~--~~-~ 322 (626)
.++.+.-|...|+.+.|.|- . .|+++...|.|.+||...+..+..+. +..++..++|-|. +. .
T Consensus 47 ~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd 126 (1062)
T KOG1912|consen 47 LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRD 126 (1062)
T ss_pred hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchh
Confidence 57788889999999999751 1 57788888999999999888888886 5668999999773 22 4
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCce---eeeEEeeccc--c
Q 006909 323 YFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDL---KLEKVDFHDR--K 395 (626)
Q Consensus 323 ~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~---~~~~~~~~~~--~ 395 (626)
.|+.-....++.+|+..+|+..- .........|+.+.| |.+.+.+-+..|.+.+-+.-.... +.+.+..... .
T Consensus 127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sd 206 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSD 206 (1062)
T ss_pred eeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccc
Confidence 56666666899999998887654 334445566688988 667777777788777776533221 1111111110 0
Q ss_pred -----------ccCCC------C---eEEEEEcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCC
Q 006909 396 -----------KTSGN------K---ITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT 453 (626)
Q Consensus 396 -----------~~~~~------~---i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~ 453 (626)
..+.. - ...++|+|.- +.++-......+.|+|+. .............++..+--.|.
T Consensus 207 l~~lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 207 LAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred hhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence 00000 0 1135678875 345555567789999976 34444444333334444333444
Q ss_pred CCEEEEEeCCccEEEEECCC
Q 006909 454 GKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 454 g~~l~s~s~dg~I~iwd~~~ 473 (626)
...|++...||.+.+|-...
T Consensus 286 rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cceEEEEecCCeEEEEEeec
Confidence 56799999999999998765
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.53 E-value=2e-07 Score=96.28 Aligned_cols=212 Identities=17% Similarity=0.288 Sum_probs=143.4
Q ss_pred cccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcc
Q 006909 175 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 253 (626)
Q Consensus 175 ~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (626)
-.+.||+.+|+.+.|.|... .|||++.|-.+..||+.+.
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp---------------------------------------- 147 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP---------------------------------------- 147 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCC----------------------------------------
Confidence 45679999999999998755 8999999999999999873
Q ss_pred ccccCCCceeeccCccceEEEEEcC-CCeEEEEeCCCcEEEeccCCCe-eeEee-cCCCCeEEEEEeeCCCCEEEEEeCC
Q 006909 254 FQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSID 330 (626)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~s~-~~~l~s~s~d~~v~iwd~~~~~-~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~d 330 (626)
..++.....-......++|+- ++.+++.+..+.|++||.+.|. ++..+ +|...|+.++|+......+.+.+.|
T Consensus 148 ----~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d 223 (1081)
T KOG0309|consen 148 ----HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND 223 (1081)
T ss_pred ----CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence 233444444455667788884 4567777788899999997654 44444 4778899999987667789999999
Q ss_pred CcEEEEeCCCC--eEEEeccCCCCeEEEEEeeCCCEEEEEec--CCcEEEEEcCCCceeeeEE---eeccccccCCCCeE
Q 006909 331 GKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKV---DFHDRKKTSGNKIT 403 (626)
Q Consensus 331 g~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~g~~--dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~i~ 403 (626)
|+|+.||.... +.........+|.--++.|-|+..++--. +..+.+++-++........ .......+|...|.
T Consensus 224 ~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~ 303 (1081)
T KOG0309|consen 224 GTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL 303 (1081)
T ss_pred CceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence 99999998643 33344555667777778886654444322 2244444433322221110 01112344556666
Q ss_pred EEEEcCCC---------CcEEEEEeCCCcEEEEeCC
Q 006909 404 GIQFSRDE---------SQRIMITSEDSKLRILDGV 430 (626)
Q Consensus 404 ~l~~s~~~---------~~~l~~~s~dg~i~iwd~~ 430 (626)
.+.|-..+ ...|++=+.|.++++|-+.
T Consensus 304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred HHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 66553321 2479999999999999754
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.51 E-value=0.00017 Score=69.86 Aligned_cols=188 Identities=14% Similarity=0.122 Sum_probs=121.3
Q ss_pred EEEEcC-CC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc--
Q 006909 273 DLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-- 348 (626)
Q Consensus 273 ~l~~s~-~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-- 348 (626)
+++|.+ ++ ++++--..+.|..|+..++.... +.... ...+++...+ ..++.+... .+.++|..+++...+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 567887 56 45555568899999998776543 33333 7777887415 555555554 45666998887654333
Q ss_pred ----CCCCeEEEEEeeCCCEEEEEecC--------CcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEE
Q 006909 349 ----VRDVISAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 416 (626)
Q Consensus 349 ----~~~~i~~i~~sp~g~~l~~g~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~ 416 (626)
.....+.+++.|+|+..++.... |.+..++.. .+.... . .. ......|+|+|++..+++
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~--~~-----~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-A--DG-----LGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-E--EE-----ESSEEEEEEETTSSEEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE-e--cC-----cccccceEECCcchheee
Confidence 33567899999999966665433 456666665 332211 1 11 146789999999855556
Q ss_pred EEeCCCcEEEEeCC--cc----eeeeeecC-CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 417 ITSEDSKLRILDGV--DV----IHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 417 ~~s~dg~i~iwd~~--~~----~~~~~~~~-~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
+-+..+.|..++.. .. ...+.... ..+..-.+++..+|++.++....+.|.+++.+.
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence 77888999999864 21 12222221 223478899999999888888889999999874
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.50 E-value=2.3e-06 Score=82.86 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=104.2
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEeccCCCe----eeEeecCCCCeEEEEEeeCCCCEEEEEeCCC---cEEEEeCCCCeE
Q 006909 272 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRV 343 (626)
Q Consensus 272 ~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg---~v~iwd~~~~~~ 343 (626)
..+..++++ +++.+..++...++++.... ++..+.....-+++.|.. +......+..-| .+.+|....+..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccCc
Confidence 334455666 56666666666666664332 333333444445555555 444444444444 455555555777
Q ss_pred EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909 344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 423 (626)
Q Consensus 344 ~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~ 423 (626)
....+|-..++.++++||+++++++..|..|++-....... . +.-.-+|...|..++..++ +.|++++.|++
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~-I-----esfclGH~eFVS~isl~~~--~~LlS~sGD~t 216 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV-I-----ESFCLGHKEFVSTISLTDN--YLLLSGSGDKT 216 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-h-----hhhccccHhheeeeeeccC--ceeeecCCCCc
Confidence 88899999999999999999999999999999977654332 1 2223345688999999987 57999999999
Q ss_pred EEEEeCCcce
Q 006909 424 LRILDGVDVI 433 (626)
Q Consensus 424 i~iwd~~~~~ 433 (626)
|++||..++.
T Consensus 217 lr~Wd~~sgk 226 (390)
T KOG3914|consen 217 LRLWDITSGK 226 (390)
T ss_pred EEEEecccCC
Confidence 9999977543
No 301
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=9.3e-08 Score=100.43 Aligned_cols=226 Identities=17% Similarity=0.187 Sum_probs=150.7
Q ss_pred cccccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCC
Q 006909 165 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 244 (626)
Q Consensus 165 ~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (626)
..-|+++...++++.|+..-+|++|+-+.++|+.|+..|.|+++++.+|
T Consensus 1085 ~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG------------------------------- 1133 (1516)
T KOG1832|consen 1085 QFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG------------------------------- 1133 (1516)
T ss_pred hhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc-------------------------------
Confidence 4457888889999999999999999999999999999999999999884
Q ss_pred ceeecCCccccccCCCceeeccCccceEEEEEcCCC--eEEEEeCCC-cEEEeccCC-CeeeEeecCCCCeEEEEEeeCC
Q 006909 245 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDK-TVRMWQVGC-NQCLNVFDHHNYVTCVQFNPID 320 (626)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~-~v~iwd~~~-~~~~~~~~~~~~v~~~~~~p~~ 320 (626)
.......+|.+.|+.+.-+.+| .|.+++... ...+|++.. +...++|. .-.++.|+. .
T Consensus 1134 --------------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---ed~~vkFsn-~ 1195 (1516)
T KOG1832|consen 1134 --------------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD---EDKAVKFSN-S 1195 (1516)
T ss_pred --------------cccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc---ccceeehhh-h
Confidence 3355667899999999988777 344444433 578999853 34444443 345778886 4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEe-----ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccc
Q 006909 321 DNYFISGSIDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 395 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~~~~~~~~-----~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 395 (626)
-..-+.|.....+.+||+.++..... ......-++..|+|+.+.++ .|| .+||++..+.... +. +.
T Consensus 1196 ~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~-FD---~f 1266 (1516)
T KOG1832|consen 1196 LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHR-FD---QF 1266 (1516)
T ss_pred HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhh-hh---hh
Confidence 44444555556789999998765432 12223346788999887765 344 5799987643211 10 00
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909 396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI 460 (626)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~ 460 (626)
.--..=.|+|.| ..+++.+. |||+++....-.. ..-.-..+.|...|..++..
T Consensus 1267 ----t~~~~G~FHP~g-~eVIINSE-----IwD~RTF~lLh~V--P~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1267 ----TDYGGGGFHPSG-NEVIINSE-----IWDMRTFKLLHSV--PSLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ----eecccccccCCC-ceEEeech-----hhhhHHHHHHhcC--ccccceEEEeccCccchhhh
Confidence 011122589998 56776665 8998753221111 12234567888888776643
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.46 E-value=1.3e-06 Score=79.67 Aligned_cols=196 Identities=11% Similarity=0.189 Sum_probs=120.0
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec---CCCCeEEEEEee---------CCCCEEEEEeCCCcEEEEeC
Q 006909 271 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNP---------IDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 271 V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~p---------~~~~~l~s~s~dg~v~iwd~ 338 (626)
|+.+.+..+-.|+++..++.+.......+.+....+ ..++..+++.+. ..++-++++..||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 666666666678888888777776665554443322 112222222211 14567999999999999988
Q ss_pred CCCeEEE--eccCCCCeEEEEEeeCCCEEEEEe-----cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 339 CEKRVVD--WADVRDVISAICYIPDGKGFIVGS-----ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 339 ~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
+.-..+. .......--+.++...++.+.++. .-+..+.|+++........ ......|++++-+|..
T Consensus 119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-------~~~~~~v~~l~~hp~q 191 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS-------KKALDAVTALCSHPAQ 191 (319)
T ss_pred hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc-------ccccccchhhhCCccc
Confidence 6511110 011111112233334454444432 1234555655433322111 1112459999999987
Q ss_pred CcEEEEEeCCCcEEEEeCCcceeeee-ecCCCCCeEEEEEcC-CCCEEEEEeCCccEEEEECCC
Q 006909 412 SQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 412 ~~~l~~~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp-~g~~l~s~s~dg~I~iwd~~~ 473 (626)
...+++|+.||.+-+||.++...... ...|...+..+.|+| ++..|+++++||.+..||..+
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 77889999999999999886532221 134889999999998 568999999999999999875
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.45 E-value=8e-05 Score=69.66 Aligned_cols=191 Identities=14% Similarity=0.134 Sum_probs=105.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 263 (626)
Q Consensus 184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (626)
=..++||||+.+||.+...|+|+++|+.......+..... .
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~---------------------------------------~ 86 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMS---------------------------------------F 86 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccc---------------------------------------c
Confidence 3469999999999999999999999997632221111000 0
Q ss_pred eccCccceEEEEEcCC-------CeEEEEeCCCcEEEeccC-----CCeeeEeec----CCCCeEEEEEeeCCCCEEEEE
Q 006909 264 LHGHKGDVLDLAWSNS-------NYLLSCSMDKTVRMWQVG-----CNQCLNVFD----HHNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~-------~~l~s~s~d~~v~iwd~~-----~~~~~~~~~----~~~~v~~~~~~p~~~~~l~s~ 327 (626)
...-...|..+.|.+. ..|+.-..+|.++-|-+. ..+....|. +...|+++.++| ..++|+.|
T Consensus 87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVg 165 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVG 165 (282)
T ss_pred CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEe
Confidence 0012345555555421 157777777777777652 223344443 467899999999 77887777
Q ss_pred eCCCc-EEEEeCCCCeEEEeccCCCCeEEEEE---eeCCCEEEEEecCCc------EEEEEcCCCceeeeEEeecccccc
Q 006909 328 SIDGK-VRIWGVCEKRVVDWADVRDVISAICY---IPDGKGFIVGSITGT------CHFYKASGNDLKLEKVDFHDRKKT 397 (626)
Q Consensus 328 s~dg~-v~iwd~~~~~~~~~~~~~~~i~~i~~---sp~g~~l~~g~~dg~------i~i~d~~~~~~~~~~~~~~~~~~~ 397 (626)
+.... -..+. .....+++-.. .|..+. ++...++. ..++.+-+.. +..+...
T Consensus 166 G~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~-------~fs~~~~ 227 (282)
T PF15492_consen 166 GCEQNQDGMSK----------ASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFK-------FFSRQGQ 227 (282)
T ss_pred ccCCCCCcccc----------ccccCceEEEEcCCCCcEEE-ccccCccccccccccceeecccee-------eeecccc
Confidence 64322 00000 11111111111 111111 11111111 1122221111 1111122
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce
Q 006909 398 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI 433 (626)
Q Consensus 398 ~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~ 433 (626)
....|..|..|||| ..|++...+|.|.+|++....
T Consensus 228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcch
Confidence 24789999999998 799999999999999976543
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=8.2e-05 Score=79.07 Aligned_cols=198 Identities=21% Similarity=0.258 Sum_probs=130.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909 183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 262 (626)
Q Consensus 183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (626)
.|+| +++.+..+|.|+.+|.|.+.+-. .+.++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s----------------------------------------------~~~~~ 58 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS----------------------------------------------FQLIR 58 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc----------------------------------------------ceeee
Confidence 4554 56788899999999988777643 12235
Q ss_pred eeccCccc-eEEEEEcCC-CeEEEEeCCC-----cEEEeccCC------Ceee---Eeec-----CCCCeEEEEEeeCCC
Q 006909 263 ELHGHKGD-VLDLAWSNS-NYLLSCSMDK-----TVRMWQVGC------NQCL---NVFD-----HHNYVTCVQFNPIDD 321 (626)
Q Consensus 263 ~~~~h~~~-V~~l~~s~~-~~l~s~s~d~-----~v~iwd~~~------~~~~---~~~~-----~~~~v~~~~~~p~~~ 321 (626)
.++.+... |..+....+ +.|++.+.|+ .|+||+++. .+++ +.+. .+.++.+++.+. +-
T Consensus 59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l 137 (933)
T KOG2114|consen 59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DL 137 (933)
T ss_pred hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cc
Confidence 56666666 444433333 3788777665 499999853 3444 2333 345788999998 88
Q ss_pred CEEEEEeCCCcEEEEeCC-----CCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc
Q 006909 322 NYFISGSIDGKVRIWGVC-----EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 396 (626)
Q Consensus 322 ~~l~s~s~dg~v~iwd~~-----~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 396 (626)
+.+|+|-.+|.|..+.-. ..+.......+.+|+.+.+..+++.++.......|.+|.+.+..........
T Consensus 138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~----- 212 (933)
T KOG2114|consen 138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDN----- 212 (933)
T ss_pred cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeecc-----
Confidence 899999999999988421 1233334566789999999999988555555668999999865522222332
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeee
Q 006909 397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK 437 (626)
Q Consensus 397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 437 (626)
++..+.|..+++...+ ++++ .+..+.+|+.......+.
T Consensus 213 -~G~~lnCss~~~~t~q-fIca-~~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 213 -NGISLNCSSFSDGTYQ-FICA-GSEFLYFYDSDGRGPCFA 250 (933)
T ss_pred -CCccceeeecCCCCcc-EEEe-cCceEEEEcCCCcceeee
Confidence 3478899999887422 3333 345788998764443333
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.37 E-value=0.00053 Score=66.24 Aligned_cols=232 Identities=12% Similarity=0.109 Sum_probs=142.2
Q ss_pred EEEEEEcC-CCCEEEEEeCCCc-EEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 184 IWTLKFSP-DGRYLASGGEDGV-VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 184 V~~l~fsp-dg~~Latgs~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
...++.+| .+..++.+-.-|+ ..+||..++...... ...+-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-------------------------------------~a~~g 49 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-------------------------------------WAPPG 49 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-------------------------------------cCCCC
Confidence 44577788 5556777766664 678888876543221 12334
Q ss_pred eeeccCccceEEEEEcCCC-eEEEE-----eCCCcEEEeccC-CCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe-----
Q 006909 262 QELHGHKGDVLDLAWSNSN-YLLSC-----SMDKTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS----- 328 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~-~l~s~-----s~d~~v~iwd~~-~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s----- 328 (626)
+.|.||. .|+++| +|++. +..|.|-|||.. +.+.+..+. +.-....+.+.| ++..|+.+-
T Consensus 50 RHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~T 122 (305)
T PF07433_consen 50 RHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIET 122 (305)
T ss_pred CEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCcc
Confidence 5677775 689998 66654 334789999998 566666774 444556778899 887777652
Q ss_pred -------------CCCcEEEEeCCCCeEEEe-----ccCCCCeEEEEEeeCCCEEEEEecCCc-------EEEEEcCCCc
Q 006909 329 -------------IDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITGT-------CHFYKASGND 383 (626)
Q Consensus 329 -------------~dg~v~iwd~~~~~~~~~-----~~~~~~i~~i~~sp~g~~l~~g~~dg~-------i~i~d~~~~~ 383 (626)
.+..+.+.|..+++++.. ..++..|..+++.++|..++..-..|. +-+++....
T Consensus 123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~- 201 (305)
T PF07433_consen 123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA- 201 (305)
T ss_pred CcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-
Confidence 123466667777776653 346678999999999865555433331 223322221
Q ss_pred eeeeEEeecc-ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 006909 384 LKLEKVDFHD-RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 462 (626)
Q Consensus 384 ~~~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~ 462 (626)
...+.... ......+.+-+|++++++....+++-..+.+.+||..+....-.. .-..+..++-.+++ ++++.+
T Consensus 202 --~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGva~~~~~-f~~ssG- 275 (305)
T PF07433_consen 202 --LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDACGVAPTDDG-FLVSSG- 275 (305)
T ss_pred --ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--ccCceeeeeecCCc-eEEeCC-
Confidence 11111110 011224678999999998544556667789999997765433322 33456667766666 666654
Q ss_pred CccE
Q 006909 463 DCRV 466 (626)
Q Consensus 463 dg~I 466 (626)
.|.+
T Consensus 276 ~G~~ 279 (305)
T PF07433_consen 276 QGQL 279 (305)
T ss_pred CccE
Confidence 3443
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=9e-06 Score=85.52 Aligned_cols=178 Identities=16% Similarity=0.166 Sum_probs=121.7
Q ss_pred CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee
Q 006909 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 386 (626)
Q Consensus 307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~ 386 (626)
....++|++++ +.+|+.|+.+|.|++++..... .....|... ..+|.++++++.||++.|..+-+.+...
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 34567788884 6899999999999999987654 333444333 5689999999999999998887665432
Q ss_pred eEEeeccccccCCCCeEEEEEcCC----CCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909 387 EKVDFHDRKKTSGNKITGIQFSRD----ESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI 460 (626)
Q Consensus 387 ~~~~~~~~~~~~~~~i~~l~~s~~----~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~ 460 (626)
+..++ .++.+++++|+ .++.+++|+..| +.++.-+ ........+...++|.+++|. |++||-+
T Consensus 108 -~~df~-------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa 176 (846)
T KOG2066|consen 108 -QYDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA 176 (846)
T ss_pred -eEecC-------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe
Confidence 23332 68999999998 346899999988 7777622 122222455578899999996 8888888
Q ss_pred eCCccEEEEECCCCCCCCCC-------ccCCccceeeeccCCcEEEEecCCCCc
Q 006909 461 GDDCRVYVWNYDELCFPSSK-------QKNSVRSCEHFFSEGVSVAVQWPGIGT 507 (626)
Q Consensus 461 s~dg~I~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~av~~s~~~~ 507 (626)
+++| |+|||+...+..... ........+.|.+ ...+.++|...-.
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~~LVIGW~d~v~ 228 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-EDRLVIGWGDSVK 228 (846)
T ss_pred cCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC-CCeEEEecCCeEE
Confidence 7666 999999887322111 1111122233444 4556888876533
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=2.3e-05 Score=82.62 Aligned_cols=186 Identities=16% Similarity=0.235 Sum_probs=132.6
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 260 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (626)
.+.++|++++ +++|+-|..+|.|++.+... .+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~----------------------------------------------~~ 70 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG----------------------------------------------NP 70 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC----------------------------------------------cc
Confidence 4568888887 67999999999999998764 12
Q ss_pred ceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCC-----CCEEEEEeCCCcEE
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID-----DNYFISGSIDGKVR 334 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~s~s~dg~v~ 334 (626)
.+...|... ..+| +++|||.||+|.|-.+.+.+...++....++.+++++| + .+.+++|+..| +.
T Consensus 71 -~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~P-d~~~~~sk~fv~GG~ag-lv 141 (846)
T KOG2066|consen 71 -KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHP-DFSRQQSKQFVSGGMAG-LV 141 (846)
T ss_pred -ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEecc-chhhhhhhheeecCcce-EE
Confidence 222334433 3345 99999999999999999999989999999999999999 5 56799999888 77
Q ss_pred EEeCC---CCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 335 IWGVC---EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 335 iwd~~---~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
++.-+ ....+......++|.+++|. |+++|=++.+ .|++||+...+.... +...............+.|.++.
T Consensus 142 L~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~-Gv~vyd~~~~~~l~~-i~~p~~~~R~e~fpphl~W~~~~ 217 (846)
T KOG2066|consen 142 LSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDD-GVKVYDTPTRQRLTN-IPPPSQSVRPELFPPHLHWQDED 217 (846)
T ss_pred EehhhhhcCccceeeecCccceEEEEec--CcEEEEecCC-CcEEEeccccceeec-cCCCCCCCCcccCCCceEecCCC
Confidence 77532 23333456778899999996 6566666544 589999987765433 22222222233445678898874
Q ss_pred CcEEEEEeCCCcEEEEeCC
Q 006909 412 SQRIMITSEDSKLRILDGV 430 (626)
Q Consensus 412 ~~~l~~~s~dg~i~iwd~~ 430 (626)
.|+.|= ..+|+|..++
T Consensus 218 --~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 218 --RLVIGW-GDSVKICSIK 233 (846)
T ss_pred --eEEEec-CCeEEEEEEe
Confidence 555553 4467777655
No 308
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.33 E-value=1.3e-05 Score=85.37 Aligned_cols=177 Identities=12% Similarity=0.152 Sum_probs=136.1
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeecCCC-CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEE
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICY 358 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~ 358 (626)
.++-|+....+..+|+.+.+..+...... .|+-++. +++.+.+|...|+|.+-|.++-+.+. +..|.+.|..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD- 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD- 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee-
Confidence 57777777788889999888877765333 4555554 67899999999999999999877654 678888887665
Q ss_pred eeCCCEEEEEec---------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe-
Q 006909 359 IPDGKGFIVGSI---------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD- 428 (626)
Q Consensus 359 sp~g~~l~~g~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd- 428 (626)
-.|+.|++++. |.-|++||++..+.... +.++ ....-+.|.|.-...+++++..|...+-|
T Consensus 225 -v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-I~~~-------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 225 -VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-IQFP-------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred -ccCCeEEEeecccccccccccchhhhhhhhhhhccCC-cccc-------cCchhhhhcccccceEEEEecccceeeccc
Confidence 46888888765 45689999998765322 2222 22355778888778999999999999999
Q ss_pred --CCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 429 --GVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 429 --~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
+.++ ...+...+....+.++++|++|+.++.|..+|.|.+|.
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4444 44444555666799999999999999999999999998
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=9.8e-05 Score=71.81 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=72.3
Q ss_pred CceeeccCccceEEEEEcCC--CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 260 PLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
+...+.+|...|.+++|+|. |++..++.+.+|+|.|+++..++..+.....+++++|.-.+.+++..|..+|.|.+||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence 34567788999999999986 4788999999999999999999998887799999999986778889999999999999
Q ss_pred CCCC
Q 006909 338 VCEK 341 (626)
Q Consensus 338 ~~~~ 341 (626)
++..
T Consensus 265 ~R~~ 268 (463)
T KOG1645|consen 265 MRQP 268 (463)
T ss_pred ccCC
Confidence 9863
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=7.2e-06 Score=80.48 Aligned_cols=203 Identities=13% Similarity=0.167 Sum_probs=143.4
Q ss_pred cCccceEEEEEcCCCeEEEEeCCCcEEEeccCC--C-eeeEee-cCCCCeEEEEEeeCCCCEEEEEeC-CCcEEEEeCCC
Q 006909 266 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC--N-QCLNVF-DHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCE 340 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~--~-~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~-dg~v~iwd~~~ 340 (626)
-|...|+.+......++++++.||.++.|.-.. + +.+..+ .|...|.+++.+- ++..+.|++. |..++++|+..
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 378888888877778999999999999997543 1 222223 3778888888888 8999999777 99999999977
Q ss_pred CeEEEeccCCCCeEEEEEee-CC---CEEEE-EecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 341 KRVVDWADVRDVISAICYIP-DG---KGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 341 ~~~~~~~~~~~~i~~i~~sp-~g---~~l~~-g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
-..............+.|.. .| ..+++ ...+|.+.++|-....++... ....|..+|..+.+.+.+ ..+
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~-----fkklH~sPV~~i~y~qa~-Ds~ 159 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY-----FKKLHFSPVKKIRYNQAG-DSA 159 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce-----ecccccCceEEEEeeccc-cce
Confidence 55443333222222233322 22 13333 345789999998766543321 133455899999999987 678
Q ss_pred EEEeCCCcEEEEeCCccee---------------eeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 416 MITSEDSKLRILDGVDVIH---------------KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~~~~---------------~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
++....|.|.-|......+ .+..........++.|+|+|..+.+-+.|..|+++++.++.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 8888899999998652110 11112245677899999999999999999999999999873
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.27 E-value=1.5e-06 Score=57.02 Aligned_cols=36 Identities=33% Similarity=0.722 Sum_probs=33.7
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEec
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ 295 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd 295 (626)
++.++.+|.+.|++|+|+|++ +|++++.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 568899999999999999986 999999999999997
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.27 E-value=0.00018 Score=79.37 Aligned_cols=200 Identities=12% Similarity=0.161 Sum_probs=128.1
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
-.+.|.++.|..++.-++.+..+|.|.+-|..+...
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------------------------------- 102 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------------------------------- 102 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce--------------------------------------------
Confidence 346899999999999999999999999988776322
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEecc----CCCeee-------------------Eeec---------
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV----GCNQCL-------------------NVFD--------- 306 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~----~~~~~~-------------------~~~~--------- 306 (626)
.....-...|.+++|+||+ .++..+..+++.+-.- -.-+.+ ..|.
T Consensus 103 --eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~ 180 (1265)
T KOG1920|consen 103 --EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAAR 180 (1265)
T ss_pred --eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccc
Confidence 2222335789999999987 6666666666665421 111111 1111
Q ss_pred -------------CCCCeEEEEEeeCCCCEEEEE-----eCCCcEEEEeCCCCeEEEe-ccCCCCeEEEEEeeCCCEEEE
Q 006909 307 -------------HHNYVTCVQFNPIDDNYFISG-----SIDGKVRIWGVCEKRVVDW-ADVRDVISAICYIPDGKGFIV 367 (626)
Q Consensus 307 -------------~~~~v~~~~~~p~~~~~l~s~-----s~dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~ 367 (626)
..+.=+.|.|-- +|.++++. .....|++||.. +.+-.. ....+.-.+++|-|.|..+++
T Consensus 181 ~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~ 258 (1265)
T KOG1920|consen 181 QKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAA 258 (1265)
T ss_pred ccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEee
Confidence 011123588877 89898873 223789999987 443322 222344568999999999887
Q ss_pred Ee---cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEE---EeCCCcEEEEeCCcc
Q 006909 368 GS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI---TSEDSKLRILDGVDV 432 (626)
Q Consensus 368 g~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~---~s~dg~i~iwd~~~~ 432 (626)
-. .++.|.+|.-++-...-..+. .+.....+..++|+.++ ..|++ ......|++|-+.+.
T Consensus 259 iq~~~sd~~IvffErNGL~hg~f~l~----~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 259 IQCKTSDSDIVFFERNGLRHGEFVLP----FPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecCCCCcEEEEecCCccccccccC----CcccccchheeeecCCC-CceeeeecccccceEEEEEecCe
Confidence 43 456788988765433211111 12223459999999996 56766 344455999987653
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.26 E-value=2.4e-05 Score=83.37 Aligned_cols=148 Identities=16% Similarity=0.238 Sum_probs=112.7
Q ss_pred ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeC---------CCcEEEEeCC
Q 006909 270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI---------DGKVRIWGVC 339 (626)
Q Consensus 270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~---------dg~v~iwd~~ 339 (626)
.|.-+.. .+..+.+|...|+|.+-|..+.+.++++. |.+.|..+.. .|+.|++++. |.-|+|||++
T Consensus 179 ~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 179 GVTIMRY-NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ceEEEEe-cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhh
Confidence 3554443 23478899999999999999999999996 9999998877 6889998875 4568999999
Q ss_pred CCeEEEeccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEE---cCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 340 EKRVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYK---ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 340 ~~~~~~~~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
.-+.+..........-+.|+|. ...+++.+..|...+-| +.+.......+... +..+..+.+++++ +.+
T Consensus 255 mmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~------~s~i~~fDiSsn~-~al 327 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN------GSGISAFDISSNG-DAL 327 (1118)
T ss_pred hhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC------CCcceeEEecCCC-ceE
Confidence 8776655554444466778884 46788999999999999 44332222222211 2559999999997 799
Q ss_pred EEEeCCCcEEEEe
Q 006909 416 MITSEDSKLRILD 428 (626)
Q Consensus 416 ~~~s~dg~i~iwd 428 (626)
+.|..+|.|.+|.
T Consensus 328 afgd~~g~v~~wa 340 (1118)
T KOG1275|consen 328 AFGDHEGHVNLWA 340 (1118)
T ss_pred EEecccCcEeeec
Confidence 9999999999997
No 314
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.24 E-value=0.00034 Score=72.96 Aligned_cols=188 Identities=12% Similarity=0.041 Sum_probs=111.3
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEE--
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAI-- 356 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i-- 356 (626)
++.++.++.++.+..+|..+|+.+........+.+--.- .+..++.++.++.|..+|..+++.+-......+...+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 457788888999999999999998887654444332111 2456777888899999999998876332222111000
Q ss_pred EEee--CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccC-CCCeEEEEEcC--CCCcEEEEEeCCCcEEEEeCCc
Q 006909 357 CYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNKITGIQFSR--DESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 357 ~~sp--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~s~--~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
.-+| .+..+++++.+|.+..+|..+++..... ......... ......+..+| .+ ..+++++.++.+..+|..+
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCC
Confidence 0011 2346777888999999998887754331 111000000 00000111111 12 3677777889999999876
Q ss_pred ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 432 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
.....+... .....+. ..+..|+.++.+|.++.+|..++
T Consensus 276 G~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 276 GQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred CCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCC
Confidence 655544321 1111122 24667777888899999998776
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=6.5e-06 Score=78.14 Aligned_cols=153 Identities=16% Similarity=0.265 Sum_probs=115.9
Q ss_pred EEcCC--CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC-----eEEEec
Q 006909 275 AWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-----RVVDWA 347 (626)
Q Consensus 275 ~~s~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~-----~~~~~~ 347 (626)
+|+-+ ++-++.+.+..|-+-|+++|.. +.|...+.|.++.|.. .+++++.|..+|.|..+|++.+ ......
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc-cccccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 66532 4457777888899999987744 4556778899999998 8999999999999999999864 355667
Q ss_pred cCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909 348 DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426 (626)
Q Consensus 348 ~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i 426 (626)
-|...|+++..-. ++++|++.+.+|+|++||++.-+.........+|...+. ..-+...+.. ..++++++|...+|
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a--~l~~~v~~ee-g~I~s~GdDcytRi 372 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA--YLPAHVKEEE-GSIFSVGDDCYTRI 372 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc--cccccccccc-ceEEEccCeeEEEE
Confidence 7889999998777 889999999999999999987776544444454432221 1122334444 58888999999999
Q ss_pred EeCCcc
Q 006909 427 LDGVDV 432 (626)
Q Consensus 427 wd~~~~ 432 (626)
|.+...
T Consensus 373 Wsl~~g 378 (425)
T KOG2695|consen 373 WSLDSG 378 (425)
T ss_pred EecccC
Confidence 998754
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=1.4e-06 Score=91.81 Aligned_cols=195 Identities=16% Similarity=0.188 Sum_probs=134.6
Q ss_pred CCceeeccCccceEEEEEcCC-CeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCC--cEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG--KVR 334 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg--~v~ 334 (626)
.+.+.+..|+...+|++|+.+ +.|+.|+..|.|+++++.+|....... |..+|+.+.-+. +|..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 456678889999999999975 499999999999999999998887775 999999999888 888776655433 467
Q ss_pred EEeCCC-CeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc
Q 006909 335 IWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 413 (626)
Q Consensus 335 iwd~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 413 (626)
+|++.. +... ..-..-.++.|+.....-++|+......+||+.+.......+... .+....-.+..|+|+. .
T Consensus 1171 LW~~~s~~~~~---Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~---~~~~y~~n~a~FsP~D-~ 1243 (1516)
T KOG1832|consen 1171 LWDASSTGGPR---HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT---VTSSYSNNLAHFSPCD-T 1243 (1516)
T ss_pred HhccccccCcc---ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc---hhhhhhccccccCCCc-c
Confidence 898864 1111 112334567888776667778888899999999876543311111 0111233677899986 4
Q ss_pred EEEEEeCCCcEEEEeCCcc--eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 414 RIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 414 ~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+++- || .+||.+.. ++.|... . .-..-.|+|.|.-++..++ |||+.+.
T Consensus 1244 LIln---dG--vLWDvR~~~aIh~FD~f--t-~~~~G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1244 LILN---DG--VLWDVRIPEAIHRFDQF--T-DYGGGGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred eEee---Cc--eeeeeccHHHHhhhhhh--e-ecccccccCCCceEEeech-----hhhhHHH
Confidence 4442 33 47887744 2223221 1 1123468999999998765 8999885
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.17 E-value=0.00029 Score=72.57 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=86.0
Q ss_pred ecCCCCeEEEEEeeCCCCEEEEEe----CCCc----EEEEeCCCCeEE----EeccCCCCeEEEEEeeCCCEEEEEecCC
Q 006909 305 FDHHNYVTCVQFNPIDDNYFISGS----IDGK----VRIWGVCEKRVV----DWADVRDVISAICYIPDGKGFIVGSITG 372 (626)
Q Consensus 305 ~~~~~~v~~~~~~p~~~~~l~s~s----~dg~----v~iwd~~~~~~~----~~~~~~~~i~~i~~sp~g~~l~~g~~dg 372 (626)
........++.|+..+++.+.+.. .+|. -.+|++..+++. .....+..+.+++++|+...++.|+.||
T Consensus 202 irTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg 281 (545)
T PF11768_consen 202 IRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG 281 (545)
T ss_pred EEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCC
Confidence 344555577888875666666543 3343 356776655432 3456788999999999999999999999
Q ss_pred cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 006909 373 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 430 (626)
Q Consensus 373 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~ 430 (626)
.|.+||...+.....+. .-.++.++|+|+| ..+++|+..|.+.+||+.
T Consensus 282 SiiLyD~~~~~t~~~ka---------~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 282 SIILYDTTRGVTLLAKA---------EFIPTLIAWHPDG-AIFVVGSEQGELQCFDMA 329 (545)
T ss_pred eEEEEEcCCCeeeeeee---------cccceEEEEcCCC-cEEEEEcCCceEEEEEee
Confidence 99999987664332211 2467899999998 799999999999999965
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.15 E-value=0.0031 Score=61.00 Aligned_cols=200 Identities=13% Similarity=0.148 Sum_probs=127.7
Q ss_pred EEEEEcCCC--eEEEEeCCCc-EEEeccCCCeeeEeecCCC---CeEEEEEeeCCCCEEEEEeC-----CCcEEEEeCCC
Q 006909 272 LDLAWSNSN--YLLSCSMDKT-VRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSI-----DGKVRIWGVCE 340 (626)
Q Consensus 272 ~~l~~s~~~--~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~s~s~-----dg~v~iwd~~~ 340 (626)
..++.+|.. .++.+-.-|+ ..+||..+++....+.... .--...|+| ++++|++.-. .|.|-|||...
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 346667743 5556655554 6789999998887774211 122468999 9999998754 37899999983
Q ss_pred --CeEEEeccCCCCeEEEEEeeCCCEEEEEec------------------CCcEEEEEcCCCceeeeEEeeccccccCCC
Q 006909 341 --KRVVDWADVRDVISAICYIPDGKGFIVGSI------------------TGTCHFYKASGNDLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 341 --~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 400 (626)
.++-.+..+.-....+.+.|||+.|+++.. +.++.+.|..++.+.-. ..+. ...+..
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q-~~Lp--~~~~~l 163 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ-VELP--PDLHQL 163 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee-eecC--cccccc
Confidence 233346666666778889999988888632 23455566666654322 2221 112346
Q ss_pred CeEEEEEcCCCCcEEEEEeCCC-------cEEEEeCCcceeeeee-----cCCCCCeEEEEEcCCCCEEEEEe-CCccEE
Q 006909 401 KITGIQFSRDESQRIMITSEDS-------KLRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIG-DDCRVY 467 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~dg-------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~sp~g~~l~s~s-~dg~I~ 467 (626)
.|..+++.++| ..++..-..| -|-+++.......+.. ..-...+-++++++++.++++.+ .-+.+.
T Consensus 164 SiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 164 SIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred ceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 89999999997 3333332222 2445554433333322 12346789999999999886665 568999
Q ss_pred EEECCCCCC
Q 006909 468 VWNYDELCF 476 (626)
Q Consensus 468 iwd~~~~~~ 476 (626)
+||..++..
T Consensus 243 ~~d~~tg~~ 251 (305)
T PF07433_consen 243 VWDAATGRL 251 (305)
T ss_pred EEECCCCCE
Confidence 999998743
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.15 E-value=0.0015 Score=66.83 Aligned_cols=231 Identities=13% Similarity=0.135 Sum_probs=121.0
Q ss_pred ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-C-----------------CCCeEEEEEeeCCCCEEEEEeC
Q 006909 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-H-----------------HNYVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~-----------------~~~v~~~~~~p~~~~~l~s~s~ 329 (626)
...+....|+|+|..++--.++.|.+++..++...+... . -+.-..+.|+| ++++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEE
Confidence 567888999999844444456789999987775544321 1 11235688999 9888886543
Q ss_pred C-Cc-----------------------------------EEEEeCCCCeEEEe------ccCCCCeEEEEEeeCCCEEEE
Q 006909 330 D-GK-----------------------------------VRIWGVCEKRVVDW------ADVRDVISAICYIPDGKGFIV 367 (626)
Q Consensus 330 d-g~-----------------------------------v~iwd~~~~~~~~~------~~~~~~i~~i~~sp~g~~l~~ 367 (626)
| .. +.|+|+.+++...+ ......+..+.|.++++.|++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 11 33344444332211 122345788999999985554
Q ss_pred Eec--CC---cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEE--eCCcceeeeeec
Q 006909 368 GSI--TG---TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRIL--DGVDVIHKFKGL 439 (626)
Q Consensus 368 g~~--dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~~~~~l~~~s~dg~i~iw--d~~~~~~~~~~~ 439 (626)
.-. +. .+.++|..++........... .--..-..+.|. +++..++.....+|.-+|| +....... ...
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~---~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT 276 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSD---GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLT 276 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESS---SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCC---cceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccc
Confidence 333 22 466777776555433211111 111222355554 7776778788888865555 44433322 222
Q ss_pred CCCCCeE-EEEEcCCCCEEE-EEeCC----ccEEEEECC-CCCCCCCCccCCccceeeeccCCcEEEEecC
Q 006909 440 PKSGSQM-SASFTTTGKHII-SIGDD----CRVYVWNYD-ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP 503 (626)
Q Consensus 440 ~~~~~v~-~~~~sp~g~~l~-s~s~d----g~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s 503 (626)
...-.|. -+.++++++.|+ ++..+ ..|+.-++. ++................|+|+|..++..++
T Consensus 277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 2344554 467788877665 45442 366666776 4321111111111123455555555555443
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.14 E-value=0.00059 Score=75.56 Aligned_cols=197 Identities=10% Similarity=0.116 Sum_probs=131.7
Q ss_pred ccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC----CCCe
Q 006909 268 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV----CEKR 342 (626)
Q Consensus 268 ~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~----~~~~ 342 (626)
...|.++.|..+. .++.+..+|.|.+-|..+......-.-.+.|.+++|+| ++..++..+..+++.+-+- -..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3689999998765 77888888999999888776655445678899999999 9999998888777765432 0000
Q ss_pred -E----------E---------Eecc---------------------CCCCeEEEEEeeCCCEEEEE-----ecCCcEEE
Q 006909 343 -V----------V---------DWAD---------------------VRDVISAICYIPDGKGFIVG-----SITGTCHF 376 (626)
Q Consensus 343 -~----------~---------~~~~---------------------~~~~i~~i~~sp~g~~l~~g-----~~dg~i~i 376 (626)
+ + .+.+ ..+.=++|+|--||+++++. .....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0 0 0110 11123458999999999983 33379999
Q ss_pred EEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEE---eCCCcEEEEeCCcc---eeeeeecCCCCCeEEEEE
Q 006909 377 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT---SEDSKLRILDGVDV---IHKFKGLPKSGSQMSASF 450 (626)
Q Consensus 377 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~---s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~ 450 (626)
||-. +.+..... ...+--.+++|-|.| .++++. ..|+.|.++.-+.. ...+........+..++|
T Consensus 227 ~drE-g~Lns~se-------~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 227 YDRE-GALNSTSE-------PVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred eccc-chhhcccC-------cccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence 9987 33221111 111345679999988 567665 34567999984322 222222324445899999
Q ss_pred cCCCCEEEE---EeCCccEEEEECCCC
Q 006909 451 TTTGKHIIS---IGDDCRVYVWNYDEL 474 (626)
Q Consensus 451 sp~g~~l~s---~s~dg~I~iwd~~~~ 474 (626)
+.++..|++ ......|++|-+.+-
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecCe
Confidence 999999988 445556999998764
No 321
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.13 E-value=0.0013 Score=68.53 Aligned_cols=179 Identities=9% Similarity=0.043 Sum_probs=108.6
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCC--------eEEEEEee-CCCCEEEEEeCCCcEEEEeCCCCeEEEeccC
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNP-IDDNYFISGSIDGKVRIWGVCEKRVVDWADV 349 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------v~~~~~~p-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 349 (626)
++.++.++.++.+...|..+|+.+..+....+ ...+.-+| ..+..++.++.+|.+..+|..+++.+-....
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 284 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY 284 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence 35677788889999999998887665532111 01111111 1345677778899999999998876532222
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909 350 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 429 (626)
Q Consensus 350 ~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~ 429 (626)
.. ...+ ...+..+++++.+|.+..+|..+++.......... ....+.... + .++++++.+|.|.++|.
T Consensus 285 ~~-~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~------~~~~sp~v~-~--g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 285 GS-VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH------RLLTAPVLY-N--GYLVVGDSEGYLHWINR 352 (394)
T ss_pred CC-ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCC------CcccCCEEE-C--CEEEEEeCCCEEEEEEC
Confidence 11 1112 23566888889999999999988765432111111 112222222 3 37888999999999998
Q ss_pred CcceeeeeecCCCCCeE-EEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 430 VDVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 430 ~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
.+.....+.......+. ...+ .+..|+.++.||.|+.++.
T Consensus 353 ~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 353 EDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 76554443321222222 1222 2557888899999998875
No 322
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.10 E-value=0.0014 Score=62.98 Aligned_cols=181 Identities=16% Similarity=0.078 Sum_probs=110.8
Q ss_pred CCcEEEeccCCCeeeEeecCCCCeEEEE--EeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEE
Q 006909 288 DKTVRMWQVGCNQCLNVFDHHNYVTCVQ--FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF 365 (626)
Q Consensus 288 d~~v~iwd~~~~~~~~~~~~~~~v~~~~--~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l 365 (626)
+|+|..||..+|+.+............. ..+ ++..+++++.++.|..||..+++.+-.......+...- ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 6889999999999998886422122222 222 56778888899999999999988765444333322222 3356677
Q ss_pred EEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCC-
Q 006909 366 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS- 444 (626)
Q Consensus 366 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~- 444 (626)
++++.++.++.+|..+++........... ...........+. + ..++++..++.|..+|..+.............
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSP-PAGVRSSSSPAVD--G-DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSC-TCSTB--SEEEEE--T-TEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccceeeeEecccCCcceeeeecccccc-ccccccccCceEe--c-CEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 88888899999998888875542221110 0001112223333 3 47888888999999998866554444222211
Q ss_pred ---------eEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 445 ---------QMSASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 445 ---------v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
+..-....++ .++.++.++.+..+|+.++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE 194 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC
Confidence 1122222344 77777777764444998874
No 323
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.07 E-value=2.8e-06 Score=86.89 Aligned_cols=203 Identities=15% Similarity=0.198 Sum_probs=134.4
Q ss_pred cCcEEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 181 KGCIWTLKFSPDG--RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 181 ~~~V~~l~fspdg--~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
...+.|++.+-+. ..++.|..+|.|-+-.+....-
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd------------------------------------------- 92 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD------------------------------------------- 92 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------------------------------------
Confidence 3457777766543 4888999999998887765211
Q ss_pred CCceeeccCccceEEEEEcCC--CeEEEE----eCCCcEEEeccCCC--eeeEe--e--cCCCCeEEEEEeeCCCCEEEE
Q 006909 259 SPLQELHGHKGDVLDLAWSNS--NYLLSC----SMDKTVRMWQVGCN--QCLNV--F--DHHNYVTCVQFNPIDDNYFIS 326 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~--~~l~s~----s~d~~v~iwd~~~~--~~~~~--~--~~~~~v~~~~~~p~~~~~l~s 326 (626)
.......+|....++++|++- +.|++| -.|..+.|||+.++ .+... | .......+++|.. +.+++++
T Consensus 93 Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvla 171 (783)
T KOG1008|consen 93 SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLA 171 (783)
T ss_pred ccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhc
Confidence 112344578889999999974 366665 23567999999876 22211 1 1234566888886 8899999
Q ss_pred EeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee-CCCEEEEEecCCcEEEEE-cCCCceeeeEEeeccccccCCCCeEE
Q 006909 327 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYK-ASGNDLKLEKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 327 ~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~i~~ 404 (626)
|.....+.++|++........-....+..+.+.| .+.+++.-. ||.|.+|| ..+-+.++..+. +. .......+..
T Consensus 172 Gm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~-~~-~N~~~~~l~~ 248 (783)
T KOG1008|consen 172 GMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIIL-RN-ENKKPKQLFA 248 (783)
T ss_pred ccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHh-hC-CCCcccceee
Confidence 9999999999998543322222233566778888 777777665 99999999 433333222211 11 1112346899
Q ss_pred EEEcCCCCcEEEEEeCC-CcEEEEeCC
Q 006909 405 IQFSRDESQRIMITSED-SKLRILDGV 430 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~d-g~i~iwd~~ 430 (626)
++|+|.....+++...| ++|+++|+.
T Consensus 249 ~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 249 LAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred EEeccCCcchhhhhccCcceEEEeccc
Confidence 99999765577777665 789999854
No 324
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.07 E-value=0.00078 Score=70.05 Aligned_cols=224 Identities=16% Similarity=0.165 Sum_probs=121.6
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccC
Q 006909 179 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 258 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (626)
...-....+.++|+|++++.++ ||.-.|+.....
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~--------------------------------------------- 63 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAW--------------------------------------------- 63 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTT---------------------------------------------
T ss_pred CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCC---------------------------------------------
Confidence 3444578999999999999854 777888873321
Q ss_pred CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909 259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~ 338 (626)
+. ...+.-...+|.+.+.+++-...++|.|+.--+......+..+..+..+-. |..|+..+. +.|.+||+
T Consensus 64 ---r~--k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw 133 (443)
T PF04053_consen 64 ---RN--KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDW 133 (443)
T ss_dssp ---EE--EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-T
T ss_pred ---cc--cccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEh
Confidence 11 123455678899888888888889999963223333344444434444432 666666654 48999999
Q ss_pred CCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCC----------ceeeeEEeeccccccCCCCeEEEEEc
Q 006909 339 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN----------DLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 339 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
.+++++....... |..+.|+++|.+++..+.+ .+.+++.... +.....+.-. ...|.+.+|.
T Consensus 134 ~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~------~~~IkSg~W~ 205 (443)
T PF04053_consen 134 ETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI------SERIKSGCWV 205 (443)
T ss_dssp TT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEE
T ss_pred hHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe------cceeEEEEEE
Confidence 9999988777664 8999999999999998755 6777665433 0011111110 1578888898
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
.+ -++.+... .|+.+=..+ ..++.. -..++.-+.+.|..+.+.....|+.|..+.++.
T Consensus 206 ~d--~fiYtT~~--~lkYl~~Ge-~~~i~~--ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 206 ED--CFIYTTSN--HLKYLVNGE-TGIIAH--LDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TT--EEEEE-TT--EEEEEETTE-EEEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred cC--EEEEEcCC--eEEEEEcCC-cceEEE--cCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 76 34444443 666643222 222222 234566667777778888888888888888764
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=0.0053 Score=56.72 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=81.4
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCe-EEEEEe
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI-SAICYI 359 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i-~~i~~s 359 (626)
+++.|+..+.+.--|..+|......-....+.+-+.- -+++++.|...|.+++.+..+|...-....-+.| ......
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 7888899999999999999888776666666665555 4788999999999999999998544333222222 234457
Q ss_pred eCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909 360 PDGKGFIVGSITGTCHFYKASGNDLKLE 387 (626)
Q Consensus 360 p~g~~l~~g~~dg~i~i~d~~~~~~~~~ 387 (626)
+++..+..|+.|++.+..|.++.....+
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEe
Confidence 8999999999999999999988776554
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=0.00033 Score=72.12 Aligned_cols=92 Identities=11% Similarity=0.136 Sum_probs=71.1
Q ss_pred EEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCC
Q 006909 375 HFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT 453 (626)
Q Consensus 375 ~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 453 (626)
.+|+...++.... ..... ....+.+.+++|+. ..++.|+.||.|.+||.......... ..-.++.++|+|+
T Consensus 239 ciYE~~r~klqrvsvtsip-----L~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~~~k--a~~~P~~iaWHp~ 310 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIP-----LPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTLLAK--AEFIPTLIAWHPD 310 (545)
T ss_pred EEEEeecCceeEEEEEEEe-----cCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeeeeee--ecccceEEEEcCC
Confidence 4677665544322 12222 23789999999997 79999999999999998766555543 3456788999999
Q ss_pred CCEEEEEeCCccEEEEECCCC
Q 006909 454 GKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 454 g~~l~s~s~dg~I~iwd~~~~ 474 (626)
|..+++|+..|.+.+||+.-.
T Consensus 311 gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 311 GAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CcEEEEEcCCceEEEEEeecC
Confidence 999999999999999998754
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.00 E-value=0.0025 Score=65.46 Aligned_cols=262 Identities=16% Similarity=0.174 Sum_probs=123.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCccee-eeecCCCCCccCCCCCeeeecCCCCCCceeecCCccc---cccC
Q 006909 183 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-KSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF---QIEE 258 (626)
Q Consensus 183 ~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 258 (626)
.|+.|.|+++..-||.|...|.|.||.+...+... ....+.... ..-++.........+.+.++.- .-..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~di~~r~~~~~~~gf 76 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDY------NFRRFSLNNSPGKLTDISDRAPPSLKEGF 76 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------------S--GGGSS-SEEE-GGG--TT-SEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCc------ccccccccCCCcceEEehhhCCccccccc
Confidence 58999999999999999999999999886532211 000000000 0000000000111111111000 0012
Q ss_pred CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec---------CCCCeEEEEEee----CCC---C
Q 006909 259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---------HHNYVTCVQFNP----IDD---N 322 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~~p----~~~---~ 322 (626)
.|...+....++|++++.|.=|+++.|..+|.+.|.|++....+..-. ....|+++.|.. .++ -
T Consensus 77 ~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred CchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 344555666899999999988999999999999999999887776532 234688888863 111 2
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC--cEEEEEcCCCceeeeEEe-eccccccCC
Q 006909 323 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVD-FHDRKKTSG 399 (626)
Q Consensus 323 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~-~~~~~~~~~ 399 (626)
.+++|...|.+.+|.+.- .......+..+... ....+. .|..++..++........ +.+. ..+
T Consensus 157 ~L~vGTn~G~v~~fkIlp-----~~~g~f~v~~~~~~-------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l--~~g 222 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILP-----SSNGRFSVQFAGAT-------TNHDSPILSIIPINADTGESALATISAMQGL--SKG 222 (395)
T ss_dssp EEEEEETTSEEEEEEEEE------GGG-EEEEEEEEE---------SS----EEEEEETTT--B-B-BHHHHHGG--GGT
T ss_pred EEEEEeCCCCEEEEEEec-----CCCCceEEEEeecc-------ccCCCceEEEEEEECCCCCcccCchhHhhcc--ccC
Confidence 567777778887776520 00000001111000 011111 222333333332211100 0000 000
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEc-----CCCCEEEEEeCCccEEEEECCCC
Q 006909 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT-----TTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----p~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
..+ .-+++...+..++++...+.....+..........+++- ..+..|++-..+|.|+++.+...
T Consensus 223 ~~i----------~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 223 ISI----------PGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp --------------EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred CCc----------CcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 111 124444557889999876554444433122223334442 35677888889999999999986
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00051 Score=72.87 Aligned_cols=69 Identities=13% Similarity=0.222 Sum_probs=58.4
Q ss_pred ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC
Q 006909 270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 339 (626)
Q Consensus 270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~ 339 (626)
.+++++|+|.. .|+.|-.-|.+.+|...+.+..... .|+.+|..+.|+| +|+.++++..-|.|.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 35569999988 7788888899999998766554443 4999999999999 99999999999999999764
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.97 E-value=0.0015 Score=69.17 Aligned_cols=132 Identities=17% Similarity=0.050 Sum_probs=81.7
Q ss_pred CCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC----CcEEEEEcCCCceeeeEEeeccccccCCCCeEEE
Q 006909 330 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 405 (626)
Q Consensus 330 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 405 (626)
.+.+.+.|..+.++............+.++|+|+++++.+.+ .++...+...... ...+.- .. .-
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~---~vvfni------~~--ie 282 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW---VVVFNI------AR--IE 282 (635)
T ss_pred eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCce---EEEEch------HH--HH
Confidence 355777787776666555555566778899999999888632 2333333222110 000000 00 01
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCc----ceeeeeecCCCCCeEEEEEcCCCCEEEEEeC-CccEEEEECCCCC
Q 006909 406 QFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELC 475 (626)
Q Consensus 406 ~~s~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd~~~~~ 475 (626)
++.++| ++... .++.|.+.|..+ ........+-......+.++|||+++++++. +.+|.|.|+.+..
T Consensus 283 a~vkdG-K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 283 EAVKAG-KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred HhhhCC-CEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 344566 34444 367899999876 3233333335667889999999999887765 8999999998853
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.95 E-value=4.9e-06 Score=85.18 Aligned_cols=198 Identities=14% Similarity=0.200 Sum_probs=130.1
Q ss_pred ccceEEEEEcCC--C-eEEEEeCCCcEEEeccCCCeee-E--eecCCCCeEEEEEeeCCCCEEEEEe----CCCcEEEEe
Q 006909 268 KGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCL-N--VFDHHNYVTCVQFNPIDDNYFISGS----IDGKVRIWG 337 (626)
Q Consensus 268 ~~~V~~l~~s~~--~-~l~s~s~d~~v~iwd~~~~~~~-~--~~~~~~~v~~~~~~p~~~~~l~s~s----~dg~v~iwd 337 (626)
...+.|+++.-+ . .++.|..+|.|-+-.++...-. . +-++..++++++|++.|.+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 456777776533 2 6888899999998877543322 2 2247789999999998788888773 356799999
Q ss_pred CCCCeE-----EEec-cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 338 VCEKRV-----VDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 338 ~~~~~~-----~~~~-~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
+.++-. ..+. +......++||..+.+.+++|.....+.++|++........+ . ...+.++...|-.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--n------Tk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--N------TKYVQGITVDPFS 207 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--h------hhhcccceecCCC
Confidence 987621 1122 234456689999889999999999999999998432211111 1 1356667777733
Q ss_pred CcEEEEEeCCCcEEEEeC-CcceeeeeecCCC-----CCeEEEEEcCCCC-EEEEEe-CCccEEEEECCCC
Q 006909 412 SQRIMITSEDSKLRILDG-VDVIHKFKGLPKS-----GSQMSASFTTTGK-HIISIG-DDCRVYVWNYDEL 474 (626)
Q Consensus 412 ~~~l~~~s~dg~i~iwd~-~~~~~~~~~~~~~-----~~v~~~~~sp~g~-~l~s~s-~dg~I~iwd~~~~ 474 (626)
+.++++.. ||.|.+||. .+....+....+. ..+..++|.|... .+++.+ +.++|+.+++...
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 35665555 999999993 3322222221122 2488999998643 344444 4589999998754
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.92 E-value=0.0059 Score=58.20 Aligned_cols=205 Identities=13% Similarity=0.218 Sum_probs=117.5
Q ss_pred eeeccCccceEEEEEcCC-C-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe
Q 006909 262 QELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 337 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd 337 (626)
+.+.+-...+..|+|.|+ + +++.....+.|...+.. |+.++.+. .....-.|++.. ++.++++--.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence 445566667999999996 4 55566667778777864 77887775 345678888875 665666555688899988
Q ss_pred CCCC--e--E---EE----ec-cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC--CceeeeEEeecc--ccccCCCC
Q 006909 338 VCEK--R--V---VD----WA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHD--RKKTSGNK 401 (626)
Q Consensus 338 ~~~~--~--~---~~----~~-~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~--~~~~~~~~~~~~--~~~~~~~~ 401 (626)
+... . . .. .. .....+-.++|+|.++.|+++-...-..+|.+.. ............ ........
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 7321 1 1 11 11 2345689999999988888888887778888765 211111111111 01223356
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeCC-cceeeeeecC-------CCCCeEEEEEcCCCCEEEEEeCCccEEEE
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLP-------KSGSQMSASFTTTGKHIISIGDDCRVYVW 469 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~s~s~dg~I~iw 469 (626)
+.+++++|....+++.+..+..|..+|.. +.+..+.... .-...-.++|.++|++.+ .++-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 88999999876788888888999999955 3333333321 113567899999996555 4566666665
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00019 Score=69.93 Aligned_cols=214 Identities=9% Similarity=-0.028 Sum_probs=117.4
Q ss_pred eccCCCCeEEEEEeeCCC-EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 006909 346 WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 424 (626)
Q Consensus 346 ~~~~~~~i~~i~~sp~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i 424 (626)
...+...|..++|+|..+ ++..++.+..|.|.|+.+...... ... ...+.+++|.-+...+|.+|...|.|
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-y~a-------~~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-YIA-------YNQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-eec-------cCCceeeeeccCCcceeEEeccCceE
Confidence 445667799999999877 677899999999999998765332 111 16899999999988899999999999
Q ss_pred EEEeCCcceeee---eecCCCCCeEEEE------EcCCCCEEEEEeCCccEEEEECCCC--CCCCCCccCCccceeeec-
Q 006909 425 RILDGVDVIHKF---KGLPKSGSQMSAS------FTTTGKHIISIGDDCRVYVWNYDEL--CFPSSKQKNSVRSCEHFF- 492 (626)
Q Consensus 425 ~iwd~~~~~~~~---~~~~~~~~v~~~~------~sp~g~~l~s~s~dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~- 492 (626)
.|||++.....+ ...-...+|..++ ..+.|.+++..+.+ +..|++... ..+........-.|+.+.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeee
Confidence 999987543222 2211233444333 23445566655543 556665432 223222333333343333
Q ss_pred -cCCcEEEEecCCCCcccc---cc-cCCCccccCccccccCCCCcccCCCcc-cCCccccCCCCcccccCCCCCCCCCCC
Q 006909 493 -SEGVSVAVQWPGIGTEQK---SL-CSSSLRDCSQKWDNLETAPWIRDSERF-SLGSWFSNDGPCRGSATWPAEKLPLWD 566 (626)
Q Consensus 493 -~~g~~~av~~s~~~~~l~---~~-~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~s~~~~d~~i~vwd 566 (626)
+-...+.+.+.|+...-. .+ ..+..++ .++|..-...-........ -..+.-.+|..+++......+.+.+||
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG-~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG-FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccC-ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 333455555555322111 00 1111111 2222221111000000001 112223566666665444457899999
Q ss_pred cccC
Q 006909 567 VTID 570 (626)
Q Consensus 567 ~~~~ 570 (626)
..+.
T Consensus 418 ~~s~ 421 (463)
T KOG1645|consen 418 PHSF 421 (463)
T ss_pred cchh
Confidence 9887
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.00071 Score=70.10 Aligned_cols=193 Identities=16% Similarity=0.208 Sum_probs=119.8
Q ss_pred ceeeccCccceEEEEEcCCC-eEEE---EeCC-CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEE-eCCCc--
Q 006909 261 LQELHGHKGDVLDLAWSNSN-YLLS---CSMD-KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGK-- 332 (626)
Q Consensus 261 ~~~~~~h~~~V~~l~~s~~~-~l~s---~s~d-~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-s~dg~-- 332 (626)
...+..-...+..-+|+|++ .++. -... ..+.++|+.+++..........-..-+|+| +++.|+.. ..||.
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~ 263 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPD 263 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCcc
Confidence 33444445567777888887 2221 1222 459999999988777776666667779999 87776554 45554
Q ss_pred EEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEec-CC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 333 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 333 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
|.++|+.++....+....+.-..-.|+|||++++..+. .| .|.+++..+... ..+.... ..-..-.|+|
T Consensus 264 iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~------~~~~~p~~Sp 335 (425)
T COG0823 264 IYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSG------GGNSNPVWSP 335 (425)
T ss_pred EEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccC------CCCcCccCCC
Confidence 67778888886666655555567889999999887654 34 456666665554 2333332 1222678999
Q ss_pred CCCcEEEEEeCCCc--EEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909 410 DESQRIMITSEDSK--LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 410 ~~~~~l~~~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
||..+++....+|. |.+.|..+... .............+|.|+|+.++..+..
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 99544444544455 55555443322 2222234444566788888887766543
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.005 Score=64.70 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=86.3
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
|...|.--+++..++|++.|+.-|.+.+|+-..+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~------------------------------------------- 68 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR------------------------------------------- 68 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh-------------------------------------------
Confidence 5566777788888999999999999999987763221
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEe-----e--cCCCCeEEEEEeeCCCCEEEEEeCCC
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-----F--DHHNYVTCVQFNPIDDNYFISGSIDG 331 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~-----~--~~~~~v~~~~~~p~~~~~l~s~s~dg 331 (626)
.....+-.+.+..+..+++. ++++|+..|.|.++.+..+..-.. . .|...|+|++|++ ++..+++|...|
T Consensus 69 -~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~G 146 (726)
T KOG3621|consen 69 -KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQG 146 (726)
T ss_pred -cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCc
Confidence 11222334556666777766 677788888999998865433211 1 2788999999999 999999999999
Q ss_pred cEEEEeCCC
Q 006909 332 KVRIWGVCE 340 (626)
Q Consensus 332 ~v~iwd~~~ 340 (626)
+|.+-.+..
T Consensus 147 kv~~~~L~s 155 (726)
T KOG3621|consen 147 KVVLTELDS 155 (726)
T ss_pred eEEEEEech
Confidence 998887765
No 335
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.80 E-value=0.0066 Score=61.35 Aligned_cols=171 Identities=13% Similarity=0.122 Sum_probs=103.1
Q ss_pred CcEEEeccCCC-----ee--eEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe-EEEeccCCCCeEEEEEee
Q 006909 289 KTVRMWQVGCN-----QC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIP 360 (626)
Q Consensus 289 ~~v~iwd~~~~-----~~--~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp 360 (626)
|.|.++++... +. +......++|++++-. ++. |+.+. ++.|.+|++...+ +.........+...+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999874 22 2233478899998876 444 44443 5899999998877 666544444444445555
Q ss_pred CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc---------
Q 006909 361 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--------- 431 (626)
Q Consensus 361 ~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~--------- 431 (626)
.++++++|.....+.++..+........+.-. .....++++.|-+++ ..++++..+|.+.++....
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d----~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVARD----YQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEEE----SS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTT
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEec----CCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCccccccc
Confidence 57799999999999988665433222222111 113568999998776 5999999999999987431
Q ss_pred -ceeeeeecCCCCCeEEE---EEcC--CCC------EEEEEeCCccEEE
Q 006909 432 -VIHKFKGLPKSGSQMSA---SFTT--TGK------HIISIGDDCRVYV 468 (626)
Q Consensus 432 -~~~~~~~~~~~~~v~~~---~~sp--~g~------~l~s~s~dg~I~i 468 (626)
.............|+++ ++.| .+. .++.++.+|.|.+
T Consensus 213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 11112222234556666 4444 122 3667777887773
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.77 E-value=0.004 Score=66.01 Aligned_cols=184 Identities=13% Similarity=0.051 Sum_probs=116.4
Q ss_pred cCCCe-E-EEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC----CcEEEEeCCCCeEEEeccCC
Q 006909 277 SNSNY-L-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID----GKVRIWGVCEKRVVDWADVR 350 (626)
Q Consensus 277 s~~~~-l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~ 350 (626)
.|+|. + .+.-..+.+.+.|.++.+....+.-......++++| ++.++++.+.+ .++..-+.............
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 34552 2 234455778888998888877776666667889999 99988887632 22333333221111111111
Q ss_pred CCeEEEEEeeCCCEEEEEecCCcEEEEEcCC----CceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909 351 DVISAICYIPDGKGFIVGSITGTCHFYKASG----NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426 (626)
Q Consensus 351 ~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i 426 (626)
. + -.+.++|++..+ .++.|.+.|..+ .......+.. +.....+.++|||...++++..+++|.|
T Consensus 280 ~-i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-------GKsPHGV~vSPDGkylyVanklS~tVSV 347 (635)
T PRK02888 280 R-I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-------PKNPHGVNTSPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred H-H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-------CCCccceEECCCCCEEEEeCCCCCcEEE
Confidence 0 0 023457887776 367899999887 2222222222 2567889999999666666777999999
Q ss_pred EeCCcceeee----------ee-cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 427 LDGVDVIHKF----------KG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 427 wd~~~~~~~~----------~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
+|+.+....+ .. ..-.......+|+++|+...|---|..|..||+..
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 9987544211 11 11123445678999999888888899999999986
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00063 Score=72.23 Aligned_cols=69 Identities=22% Similarity=0.389 Sum_probs=57.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCcee
Q 006909 184 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 263 (626)
Q Consensus 184 V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (626)
+++++|+|..-.||.|-.-|.+.+|...+. +.-..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~---------------------------------------------e~htv 96 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---------------------------------------------ETHTV 96 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCc---------------------------------------------eeeee
Confidence 567999999889999999999999987652 11223
Q ss_pred eccCccceEEEEEcCCC-eEEEEeCCCcEEEeccC
Q 006909 264 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG 297 (626)
Q Consensus 264 ~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~ 297 (626)
...|+.+|..+.||++| .++++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 34699999999999998 89999999999999765
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.71 E-value=0.0029 Score=64.76 Aligned_cols=83 Identities=12% Similarity=0.175 Sum_probs=59.7
Q ss_pred CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCC----------------
Q 006909 287 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR---------------- 350 (626)
Q Consensus 287 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---------------- 350 (626)
..+.+.|+|+.+++..........+....|+| +++.++... ++.|.+++..++....+....
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred cceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 34678999999987766655567888999999 999998886 578999998877665533221
Q ss_pred --CCeEEEEEeeCCCEEEEEecC
Q 006909 351 --DVISAICYIPDGKGFIVGSIT 371 (626)
Q Consensus 351 --~~i~~i~~sp~g~~l~~g~~d 371 (626)
+.-.++-|+|||++|+....|
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccccceEECCCCCEEEEEEEC
Confidence 223578899999999886543
No 339
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0031 Score=67.56 Aligned_cols=158 Identities=9% Similarity=0.111 Sum_probs=105.4
Q ss_pred EeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCC-eEEEEEeeCCCEEEEEecCC-----cEEEEEcCCCcee----
Q 006909 316 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLK---- 385 (626)
Q Consensus 316 ~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-i~~i~~sp~g~~l~~g~~dg-----~i~i~d~~~~~~~---- 385 (626)
|++ .+..++.|+.+|.|.+.+-.-.....+..+... |..+....+..+|++.+.|+ .+++|++...+..
T Consensus 31 ~~s-~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 31 CSS-STGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred EcC-CCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 455 788999999999998887654444555555555 44444433446777766654 5899998643211
Q ss_pred -eeEEeecc-ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC----cceeeeeecCCCCCeEEEEEcCCCCEEEE
Q 006909 386 -LEKVDFHD-RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKHIIS 459 (626)
Q Consensus 386 -~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 459 (626)
........ ..+....++++++.+.+- ..+++|-.+|.|..+... ...+.-..+....+|+++.+..+++.++-
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 10111112 233456789999999985 799999999999999743 22233333556789999999988887433
Q ss_pred EeCCccEEEEECCCCC
Q 006909 460 IGDDCRVYVWNYDELC 475 (626)
Q Consensus 460 ~s~dg~I~iwd~~~~~ 475 (626)
+..-..|.+|.+.+..
T Consensus 189 v~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRT 204 (933)
T ss_pred EEecceeEEEEecCCC
Confidence 3345679999998543
No 340
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.00045 Score=72.19 Aligned_cols=162 Identities=10% Similarity=0.135 Sum_probs=109.0
Q ss_pred CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc--CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 384 (626)
Q Consensus 307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~ 384 (626)
++..|.--++.. ++.+++.|+.-|.+++|+-.++....... ..+.+..++++++..++|.|+..|.|.++-+... .
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-L 109 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-C
Confidence 344444444454 78999999999999999988877665444 5667778889999999999999999999998873 3
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc-cee---eeeecCCCCCeEEEEEcCCCCEEEEE
Q 006909 385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIH---KFKGLPKSGSQMSASFTTTGKHIISI 460 (626)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~-~~~---~~~~~~~~~~v~~~~~sp~g~~l~s~ 460 (626)
+............|...|++++|++++ ..+++|...|+|..-.+.. ... ..........|..+... ++.+|++.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVSt 187 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVST 187 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhh
Confidence 333333333334477999999999998 7999999999998877654 111 11112234566666653 33344433
Q ss_pred eCCccEEEEECCCC
Q 006909 461 GDDCRVYVWNYDEL 474 (626)
Q Consensus 461 s~dg~I~iwd~~~~ 474 (626)
. - .-.+++.+..
T Consensus 188 l-~-r~~Lc~tE~e 199 (726)
T KOG3621|consen 188 L-T-RCILCQTEAE 199 (726)
T ss_pred h-h-hhheeecchh
Confidence 2 2 2334455443
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.67 E-value=0.03 Score=56.58 Aligned_cols=173 Identities=17% Similarity=0.324 Sum_probs=112.7
Q ss_pred CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCC------CCEEEEEeC----------CCcEEEEeCCCC-----eE--
Q 006909 289 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID------DNYFISGSI----------DGKVRIWGVCEK-----RV-- 343 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~------~~~l~s~s~----------dg~v~iwd~~~~-----~~-- 343 (626)
..|++.|..+.+.+..+. ....+.+++..... ..+|+.|+. .|.|.++++... ++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 358888888888777664 44556655543312 467777653 288999999884 32
Q ss_pred EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc-eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909 344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 422 (626)
Q Consensus 344 ~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg 422 (626)
+......++|++++-- ++ +|+++ .++.|.+|++...+ .... ..... ...++++....+ ++++|....
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~-~~~~~-----~~~i~sl~~~~~---~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKK-AFYDS-----PFYITSLSVFKN---YILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEE-EEE-B-----SSSEEEEEEETT---EEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhh-heecc-----eEEEEEEecccc---EEEEEEccc
Confidence 3345668889998865 44 44444 45899999999887 3222 22222 146777776643 889998888
Q ss_pred cEEEE--eCCcc-eeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 423 KLRIL--DGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 423 ~i~iw--d~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
.+.++ +.... ...+........++++.|-++++.++.+..+|.|.++..+.
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 88877 43222 33333333456788898987778999999999999999874
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.63 E-value=0.0013 Score=72.15 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=99.2
Q ss_pred CCCEEEEE-eCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeC-------CCEEEEEecCCcEEEEEcCCCceeeeEEee
Q 006909 320 DDNYFISG-SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD-------GKGFIVGSITGTCHFYKASGNDLKLEKVDF 391 (626)
Q Consensus 320 ~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~-------g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 391 (626)
+.++|+.- .....|+-.|+..|+++..-.....+.-..+.|+ ....++|-.+..+..||.+-..... ...
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~--v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL--VDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce--eec
Confidence 33444433 3457899999999998874443333333445554 3356778889999999998644211 111
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 392 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
..+........+|++-+.+| +||+|+.+|.||+||-......-...+-..+|..+..+.||++|++.+ +..|.+++.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 22222345678899999887 899999999999999332222222233578999999999999998776 567777775
Q ss_pred C
Q 006909 472 D 472 (626)
Q Consensus 472 ~ 472 (626)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 3
No 343
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.046 Score=56.93 Aligned_cols=173 Identities=14% Similarity=0.200 Sum_probs=94.3
Q ss_pred cEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEecc---CCCC-----eEEEEEee
Q 006909 290 TVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---VRDV-----ISAICYIP 360 (626)
Q Consensus 290 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~-----i~~i~~sp 360 (626)
.|.||+.. |+.+..+. ..+.+.++.|+. ...|+....||.+++||+.+.. ....+ .... +.+..+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 48999886 55555553 337899999986 4556677789999999997554 11111 1111 22223333
Q ss_pred CCCEEEEEecCCcEEEEEcCCCceeeeEE-eeccccc--cCCCCeEE-EEEcCCCCcEEEEEeCCCcEEEEeCCcceeee
Q 006909 361 DGKGFIVGSITGTCHFYKASGNDLKLEKV-DFHDRKK--TSGNKITG-IQFSRDESQRIMITSEDSKLRILDGVDVIHKF 436 (626)
Q Consensus 361 ~g~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~~~~~~--~~~~~i~~-l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 436 (626)
+| +++-+.++.+.+..--......... ....... ........ ..++.+. ...+....++.+.+.+.... ..
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~-~~- 212 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSF-KQ- 212 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccc-cc-
Confidence 44 4444555555444322211111111 0110000 00011111 2344443 34455555666765553322 11
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 437 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 437 ~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
....+++..++.||+|++||.-..+|.+.|.+.+-
T Consensus 213 --i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 213 --IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred --ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 12346899999999999999999999999887543
No 344
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.58 E-value=0.08 Score=52.15 Aligned_cols=198 Identities=13% Similarity=0.127 Sum_probs=113.9
Q ss_pred EEEcCCC-eEE--EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCC-CCeEEE----
Q 006909 274 LAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVD---- 345 (626)
Q Consensus 274 l~~s~~~-~l~--s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~-~~~~~~---- 345 (626)
++++.++ +++ -.+--..|.|-|+..++.+..+...+ |...-|..+.-|.+.+.||++.-..+. .|+...
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence 4556666 322 23445578888999888888887665 333334344668888899999888776 344322
Q ss_pred -eccCCCC-eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccc----cCCCCeEEEEEcCCCCcEEEEE
Q 006909 346 -WADVRDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKK----TSGNKITGIQFSRDESQRIMIT 418 (626)
Q Consensus 346 -~~~~~~~-i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~----~~~~~i~~l~~s~~~~~~l~~~ 418 (626)
+....++ +..-.+...+..++--+.+|.|+-.|+........ .+....... =..+...-+++++....+++.-
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 1112222 22334555566677788999999999988764433 332211000 0113344567776543333322
Q ss_pred eC-------C--CcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCC-EEEEEe-CCccEEEEECCCCC
Q 006909 419 SE-------D--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWNYDELC 475 (626)
Q Consensus 419 s~-------d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~s~s-~dg~I~iwd~~~~~ 475 (626)
.. | ..|.++|+.+.....+.. -..++.++..+.+.+ +|++.+ .++.|.+||..++.
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 11 1 257778877655544442 134577899988775 665544 57899999999873
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.57 E-value=0.005 Score=49.75 Aligned_cols=101 Identities=24% Similarity=0.284 Sum_probs=72.3
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 184 IWTLKFSP---DG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 184 V~~l~fsp---dg-~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
|++|++.. || +.|+.|+.|..||||+=..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----------------------------------------------- 34 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----------------------------------------------- 34 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------------------------
Confidence 67777654 33 4899999999999998553
Q ss_pred CceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCC---CEEEEEeCCCcEE
Q 006909 260 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD---NYFISGSIDGKVR 334 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~s~s~dg~v~ 334 (626)
.+.++. -++.|++++-...+.++.+-.+|+|-+|+- ...+...+....+.++++...++ ..|++|-.+|.|-
T Consensus 35 ~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 35 IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 122322 456788888887789999999999999976 33344445555688887765232 3688888888774
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.03 Score=57.92 Aligned_cols=200 Identities=15% Similarity=0.146 Sum_probs=136.7
Q ss_pred eEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC---CCcEEEEeCCCCeEEE
Q 006909 271 VLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI---DGKVRIWGVCEKRVVD 345 (626)
Q Consensus 271 V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~---dg~v~iwd~~~~~~~~ 345 (626)
-..++.++.+ .+++...++.|.+.|..+...............++++| +++.+..+.. ++++.+.|..+..+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3456677665 45555567899999988888888776555778999999 7766665554 6889999998888776
Q ss_pred eccCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC--C
Q 006909 346 WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--S 422 (626)
Q Consensus 346 ~~~~~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d--g 422 (626)
.......-..++++|+|+.+++.. .++.+.+.|..+..... ...............+.++|+|.+..++...+ +
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---cccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 644433338999999999777665 78899999977655431 00000111224567789999985444444443 5
Q ss_pred cEEEEeCCcceeeeeecCCCC-CeEEEEEcCCCCEEEEEeCC-ccEEEEECCCC
Q 006909 423 KLRILDGVDVIHKFKGLPKSG-SQMSASFTTTGKHIISIGDD-CRVYVWNYDEL 474 (626)
Q Consensus 423 ~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~s~s~d-g~I~iwd~~~~ 474 (626)
.+...|............-.. ....+.++|+|+++.+.... +.+.+-|..+.
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 888888775443333111112 56678899999999888544 78888888765
No 347
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.55 E-value=0.059 Score=54.09 Aligned_cols=195 Identities=11% Similarity=0.048 Sum_probs=97.1
Q ss_pred EEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEee-CCCCEEEEEe----------------------
Q 006909 274 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP-IDDNYFISGS---------------------- 328 (626)
Q Consensus 274 l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p-~~~~~l~s~s---------------------- 328 (626)
..+++++ .++-......|+--|+.+.+....+. ....+-...|.. .++..++-.-
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~ 165 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR 165 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence 3445554 55445455678888888877666555 344554556643 1344433221
Q ss_pred CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCC-----cEEEEEcCCCceeeeEEeeccccccCCCCeE
Q 006909 329 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 403 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~ 403 (626)
....|.-.|+.+++...+......+..+.|+|....+++=+..| .-|||-++........+..+ .....+.
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~----~~~e~~g 241 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR----MEGESVG 241 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEE
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC----CCCcccc
Confidence 11346666888888887778888889999999665565544443 24778776544433322211 1234556
Q ss_pred EEEEcCCCCcEEEEEe-C---CCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc---------------
Q 006909 404 GIQFSRDESQRIMITS-E---DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC--------------- 464 (626)
Q Consensus 404 ~l~~s~~~~~~l~~~s-~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg--------------- 464 (626)
.=-|.|||..+...+. . +..|.-+|..+....... .......+.-++||++++.=+.|.
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~ 319 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEND 319 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-SEEEEEE-TTSSEEEEEE------------------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCC
Confidence 6678999865555443 2 224555565544322211 111333455578999887644432
Q ss_pred -cEEEEECCCC
Q 006909 465 -RVYVWNYDEL 474 (626)
Q Consensus 465 -~I~iwd~~~~ 474 (626)
-|+++++..+
T Consensus 320 p~i~~~~~~~~ 330 (386)
T PF14583_consen 320 PWIYLFDVEAG 330 (386)
T ss_dssp -EEEEEETTTT
T ss_pred cEEEEeccccC
Confidence 4666777665
No 348
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.51 E-value=0.17 Score=53.18 Aligned_cols=240 Identities=15% Similarity=0.182 Sum_probs=128.3
Q ss_pred cEEEEEEcCCCCEEEEE-eCCC----cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCcccccc
Q 006909 183 CIWTLKFSPDGRYLASG-GEDG----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 257 (626)
Q Consensus 183 ~V~~l~fspdg~~Latg-s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (626)
.+...++||||++||-+ +..| .|+++|+.++.....
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--------------------------------------- 165 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--------------------------------------- 165 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE---------------------------------------
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC---------------------------------------
Confidence 44568899999988865 3334 599999988532110
Q ss_pred CCCceeeccCccceEEEEEcCCC-e-EEEEeC----------CCcEEEeccCCCeee--Eeec--CCCC-eEEEEEeeCC
Q 006909 258 ESPLQELHGHKGDVLDLAWSNSN-Y-LLSCSM----------DKTVRMWQVGCNQCL--NVFD--HHNY-VTCVQFNPID 320 (626)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~s~~~-~-l~s~s~----------d~~v~iwd~~~~~~~--~~~~--~~~~-v~~~~~~p~~ 320 (626)
.+.. .....+.|.+++ . +.+... ...|+.|.+.+...- ..+. .... ...+..++ +
T Consensus 166 -----~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d 237 (414)
T PF02897_consen 166 -----GIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-D 237 (414)
T ss_dssp -----EEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-T
T ss_pred -----cccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-c
Confidence 1111 112238999886 3 344322 234788888776443 4443 2223 66788888 8
Q ss_pred CCEEEEEeCC----CcEEEEeCCCC-----eEEEeccCCCCeEEEEEeeCCCEEEEEe---cCCcEEEEEcCCCceee-e
Q 006909 321 DNYFISGSID----GKVRIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKL-E 387 (626)
Q Consensus 321 ~~~l~s~s~d----g~v~iwd~~~~-----~~~~~~~~~~~i~~i~~sp~g~~l~~g~---~dg~i~i~d~~~~~~~~-~ 387 (626)
+++++..+.. ..+.+.|+..+ ....+......+....-+..+.+++... ..+.|...++....... .
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~ 317 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWW 317 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEE
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccce
Confidence 8887754432 34788888764 4444444444444433333444444332 23567777777665311 1
Q ss_pred EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEE-EeC-
Q 006909 388 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIIS-IGD- 462 (626)
Q Consensus 388 ~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg--~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s-~s~- 462 (626)
....... ....+..+....+ .+++....++ .|++++.. ............+.|..+...++++.+.. .+.
T Consensus 318 ~~l~~~~---~~~~l~~~~~~~~--~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~ 392 (414)
T PF02897_consen 318 TVLIPED---EDVSLEDVSLFKD--YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSF 392 (414)
T ss_dssp EEEE--S---SSEEEEEEEEETT--EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEET
T ss_pred eEEcCCC---CceeEEEEEEECC--EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCC
Confidence 1111111 0124566665544 4666665554 67888987 43333333334455666665566654433 221
Q ss_pred --CccEEEEECCCC
Q 006909 463 --DCRVYVWNYDEL 474 (626)
Q Consensus 463 --dg~I~iwd~~~~ 474 (626)
-++++.||+.++
T Consensus 393 ~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 393 TTPPTVYRYDLATG 406 (414)
T ss_dssp TEEEEEEEEETTTT
T ss_pred CCCCEEEEEECCCC
Confidence 368888998876
No 349
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.046 Score=54.13 Aligned_cols=181 Identities=12% Similarity=0.124 Sum_probs=102.1
Q ss_pred EEcCCCeEEEEeCCCcEEEeccCCCeeeEeec------CCCCeEEEEEeeCCCCEEEEEeC-----------CCcEEEEe
Q 006909 275 AWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSI-----------DGKVRIWG 337 (626)
Q Consensus 275 ~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------~~~~v~~~~~~p~~~~~l~s~s~-----------dg~v~iwd 337 (626)
.....+.|+++... +.+++.+++..+..+. .....+.+...| +|.+.++... -|.|+.+|
T Consensus 73 ~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~ 149 (307)
T COG3386 73 LIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVD 149 (307)
T ss_pred eecCCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEc
Confidence 33445577766543 5667766555533321 224566778888 7777665443 13455555
Q ss_pred CCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 338 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
...........+-...+.|+||||++.|+..... +.|.-|++........ ..... ......+..-.++...+| .+.
T Consensus 150 p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~-~~~~~~G~PDG~~vDadG-~lw 227 (307)
T COG3386 150 PDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV-DFDEEPGLPDGMAVDADG-NLW 227 (307)
T ss_pred CCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE-EccCCCCCCCceEEeCCC-CEE
Confidence 4333333344445667889999999988887654 7888887763111111 00000 011123556677788887 455
Q ss_pred EEEeCCC-cEEEEeCC-cceeeeeecCCCCCeEEEEEc-CCCCEEEEEeC
Q 006909 416 MITSEDS-KLRILDGV-DVIHKFKGLPKSGSQMSASFT-TTGKHIISIGD 462 (626)
Q Consensus 416 ~~~s~dg-~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s-p~g~~l~s~s~ 462 (626)
+++..+| .|.+|+.. .....+.. ....+++++|- |+.+.|+..+.
T Consensus 228 ~~a~~~g~~v~~~~pdG~l~~~i~l--P~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 228 VAAVWGGGRVVRFNPDGKLLGEIKL--PVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EecccCCceEEEECCCCcEEEEEEC--CCCCCccceEeCCCcCEEEEEec
Confidence 4444443 89999876 33444443 33677778874 55565555443
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.43 E-value=0.0078 Score=48.66 Aligned_cols=103 Identities=20% Similarity=0.347 Sum_probs=73.0
Q ss_pred eEEEEEeeCCC---CEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909 311 VTCVQFNPIDD---NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 387 (626)
Q Consensus 311 v~~~~~~p~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~ 387 (626)
|+++++...++ +.|++|+.|..||+|+- .+++........|++++-... ..++.+..+|+|-+|+-.....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW--- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW--- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee---
Confidence 66777765443 68999999999999964 366666677788888887766 5799999999999998643222
Q ss_pred EEeeccccccCCCCeEEEEEc---CCCCcEEEEEeCCCcEEE
Q 006909 388 KVDFHDRKKTSGNKITGIQFS---RDESQRIMITSEDSKLRI 426 (626)
Q Consensus 388 ~~~~~~~~~~~~~~i~~l~~s---~~~~~~l~~~s~dg~i~i 426 (626)
..... ..++++++. .||..-|++|-.+|.|-+
T Consensus 76 --RiKSK-----~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 --RIKSK-----NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred --eeccC-----CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22221 346666553 455567899988888753
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.42 E-value=0.069 Score=57.26 Aligned_cols=181 Identities=12% Similarity=0.105 Sum_probs=100.9
Q ss_pred CCCcEEEeccCCCeeeEeecCCC---------------------Ce-EEEEEeeCCCCEEEEEeCCC-------------
Q 006909 287 MDKTVRMWQVGCNQCLNVFDHHN---------------------YV-TCVQFNPIDDNYFISGSIDG------------- 331 (626)
Q Consensus 287 ~d~~v~iwd~~~~~~~~~~~~~~---------------------~v-~~~~~~p~~~~~l~s~s~dg------------- 331 (626)
.++.|..+|..+|+.+..+.... .+ ...++.+ .+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence 46788889999998887764211 01 1234444 456777777555
Q ss_pred -----cEEEEeCCCCeEEEeccCC-C------CeEEEEEe----eCCC---EEEEEecCCcEEEEEcCCCceeeeEEeec
Q 006909 332 -----KVRIWGVCEKRVVDWADVR-D------VISAICYI----PDGK---GFIVGSITGTCHFYKASGNDLKLEKVDFH 392 (626)
Q Consensus 332 -----~v~iwd~~~~~~~~~~~~~-~------~i~~i~~s----p~g~---~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 392 (626)
.|.-+|..+++.+=..... . ......+. -+|. .+++++.+|.+..+|..+++.........
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~ 331 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE 331 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence 6888899988865322111 0 00111111 1333 57888899999999999988765422110
Q ss_pred cccccCCCCeEEEEEcCCCCcEEEEE------------------eCCCcEEEEeCCcceeeeeecCCC--------CCeE
Q 006909 393 DRKKTSGNKITGIQFSRDESQRIMIT------------------SEDSKLRILDGVDVIHKFKGLPKS--------GSQM 446 (626)
Q Consensus 393 ~~~~~~~~~i~~l~~s~~~~~~l~~~------------------s~dg~i~iwd~~~~~~~~~~~~~~--------~~v~ 446 (626)
..+..+| + .++.+ ..+|.+.-.|..+.....+..... .+..
T Consensus 332 ----------~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~ 398 (488)
T cd00216 332 ----------QPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW 398 (488)
T ss_pred ----------cccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc
Confidence 1112222 1 12221 234566666665544443332110 1111
Q ss_pred EEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCc
Q 006909 447 SASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 481 (626)
Q Consensus 447 ~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 481 (626)
.-.....+..|+.++.||.|+.+|..++.......
T Consensus 399 ~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 399 GGSLATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CcceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 11111246789999999999999999986554443
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.39 E-value=0.00026 Score=45.17 Aligned_cols=36 Identities=39% Similarity=0.939 Sum_probs=32.3
Q ss_pred ccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006909 174 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 209 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd 209 (626)
...+.+|...|++++|++++.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345668999999999999999999999999999996
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.39 E-value=0.023 Score=54.24 Aligned_cols=202 Identities=15% Similarity=0.198 Sum_probs=107.0
Q ss_pred ccccccccCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 174 SQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 174 ~~~l~~H~~~V~~l~fspdg~-~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
.+.|.+-...+..+.|+|+.+ ++|+....+.|...+.. ++.
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v------------------------------------- 55 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV------------------------------------- 55 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E-------------------------------------
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE-------------------------------------
Confidence 345666666799999999866 55555566777666653 221
Q ss_pred cccccCCCcee--eccCccceEEEEEcCCCeEEEEe-CCCcEEEeccCCCe------eeEeec------CCCCeEEEEEe
Q 006909 253 VFQIEESPLQE--LHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQ------CLNVFD------HHNYVTCVQFN 317 (626)
Q Consensus 253 ~~~~~~~~~~~--~~~h~~~V~~l~~s~~~~l~s~s-~d~~v~iwd~~~~~------~~~~~~------~~~~v~~~~~~ 317 (626)
+.. +.+ .+..-.|++..++.++..+ .++.+.+.++.... ....+. ++..+-.++|+
T Consensus 56 --------lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 56 --------LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD 126 (248)
T ss_dssp --------EEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred --------EEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence 222 222 3567788888878555444 58889988883221 112221 44568999999
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCC---CeEE---Ee------ccCCCCeEEEEEeeC-CCEEEEEecCCcEEEEEcCCCce
Q 006909 318 PIDDNYFISGSIDGKVRIWGVCE---KRVV---DW------ADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDL 384 (626)
Q Consensus 318 p~~~~~l~s~s~dg~v~iwd~~~---~~~~---~~------~~~~~~i~~i~~sp~-g~~l~~g~~dg~i~i~d~~~~~~ 384 (626)
| .++.|+.+-......+|.+.. .... .. ...-..+.+++++|. |++++.+.....+..+|..+.-.
T Consensus 127 ~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~ 205 (248)
T PF06977_consen 127 P-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVV 205 (248)
T ss_dssp T-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EE
T ss_pred C-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEE
Confidence 9 666677777666677776653 1111 11 112345789999995 55666777788888888554422
Q ss_pred eeeEEeecccc---ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 385 KLEKVDFHDRK---KTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 385 ~~~~~~~~~~~---~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
....+.... ...-...-+|+|.++| .|.+.+.-+..+++
T Consensus 206 --~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 206 --SSLSLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred --EEEEeCCcccCcccccCCccEEEECCCC--CEEEEcCCceEEEe
Confidence 222222110 0112457899999997 56666666655554
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.36 E-value=0.15 Score=50.19 Aligned_cols=190 Identities=12% Similarity=0.155 Sum_probs=103.9
Q ss_pred ceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeE---------------eecCCCCeEEEE-EeeCCCCEEEEEeCCCc
Q 006909 270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN---------------VFDHHNYVTCVQ-FNPIDDNYFISGSIDGK 332 (626)
Q Consensus 270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~---------------~~~~~~~v~~~~-~~p~~~~~l~s~s~dg~ 332 (626)
.|..+...++- .|++- .|+.+.++++..-.... .+.....+...+ -....+...+......+
T Consensus 37 ~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 39999988864 44433 34999999986543333 122333444444 11213444444445568
Q ss_pred EEEEeCCCC-----eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc------cccCCCC
Q 006909 333 VRIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR------KKTSGNK 401 (626)
Q Consensus 333 v~iwd~~~~-----~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~~~ 401 (626)
|.+|..... ...........+.+++|. ++.+++|..+ ...+.|+.+..... ....... ......+
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~-l~~~~~~~~~~~~~~~~~~~ 191 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSE-LLDPSDSSSSFKSRNSSSKP 191 (275)
T ss_pred EEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceE-EeCccCCcchhhhcccCCCc
Confidence 998877652 344556667889999998 5578888755 57888888554321 1111110 0111234
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeCC-cce--eeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILDGV-DVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-~~~--~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+..+....+ .+|++. +..-.+.|.. ... ..+.. ...+.++++. ..||+..+.+ .|.||++.++
T Consensus 192 ~~~~~~~~~--e~Ll~~--~~~g~fv~~~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~ 257 (275)
T PF00780_consen 192 LGIFQLSDN--EFLLCY--DNIGVFVNKNGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETG 257 (275)
T ss_pred eEEEEeCCc--eEEEEe--cceEEEEcCCCCcCcccEEEc---CCchhEEEEE--CCEEEEECCC-EEEEEECcCC
Confidence 444444433 355442 2233333322 111 12222 2345566663 5688887764 5999999987
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.30 E-value=0.014 Score=60.75 Aligned_cols=157 Identities=13% Similarity=0.127 Sum_probs=97.0
Q ss_pred CCCCeEEEEEeeCCCCEEEEEe---CC-CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe-cCC--cEEEEEc
Q 006909 307 HHNYVTCVQFNPIDDNYFISGS---ID-GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITG--TCHFYKA 379 (626)
Q Consensus 307 ~~~~v~~~~~~p~~~~~l~s~s---~d-g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~-~dg--~i~i~d~ 379 (626)
....+..-+|+| ++..++..+ .. ..+.++|+.+++..........-....|+|||+.|+... .|| .|+++|+
T Consensus 191 ~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 344566678888 766554432 22 358999999887666666666666788999999887654 455 4666677
Q ss_pred CCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE--eCCc-ceeeeeecCCCCCeEEEEEcCCCCE
Q 006909 380 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD-VIHKFKGLPKSGSQMSASFTTTGKH 456 (626)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw--d~~~-~~~~~~~~~~~~~v~~~~~sp~g~~ 456 (626)
.+..... .... .+.-+.-.|+|||...+++.+..|.-.|| +... ....+... ...-..-.|+|||++
T Consensus 270 ~~~~~~~-Lt~~-------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~--~~~~~~p~~SpdG~~ 339 (425)
T COG0823 270 DGKNLPR-LTNG-------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS--GGGNSNPVWSPDGDK 339 (425)
T ss_pred CCCccee-cccC-------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc--CCCCcCccCCCCCCE
Confidence 6665321 1111 12333678999997777777777766555 4332 12222221 111226778999999
Q ss_pred EEEEeCC-cc--EEEEECCCC
Q 006909 457 IISIGDD-CR--VYVWNYDEL 474 (626)
Q Consensus 457 l~s~s~d-g~--I~iwd~~~~ 474 (626)
|+..+.. |. |.+.++.++
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred EEEEeccCCceeeEEeccCCC
Confidence 9887743 44 666666554
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.14 Score=52.88 Aligned_cols=225 Identities=14% Similarity=0.112 Sum_probs=139.1
Q ss_pred ceEEEEEcCCC-e-EEEEeCCCcEEEeccCCCeeeEeecCC-CCeEEEEEeeCCCC-EEEEEeCCCcEEEEeCCCCeEEE
Q 006909 270 DVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN-YFISGSIDGKVRIWGVCEKRVVD 345 (626)
Q Consensus 270 ~V~~l~~s~~~-~-l~s~s~d~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~p~~~~-~l~s~s~dg~v~iwd~~~~~~~~ 345 (626)
....+...+++ . .++-.....+..-+............. .....++.++ .+. .+++...++.|.+.|..+.....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~-~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNP-AGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCC-CCCeEEEecCCCCeEEEEcCcccceee
Confidence 34455666665 2 222222224555555422222222222 4456778888 555 56666667899999988888777
Q ss_pred eccCCCCeEEEEEeeCCCEEEEEec---CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC
Q 006909 346 WADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 422 (626)
Q Consensus 346 ~~~~~~~i~~i~~sp~g~~l~~g~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg 422 (626)
..........++++|+++.+.++.. ++++.+.|..+...... . ..+. .+ ..+++.|+|...+++-..++
T Consensus 111 ~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~-~vG~-----~P-~~~a~~p~g~~vyv~~~~~~ 182 (381)
T COG3391 111 SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-I-PVGN-----TP-TGVAVDPDGNKVYVTNSDDN 182 (381)
T ss_pred EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-E-ecCC-----Cc-ceEEECCCCCeEEEEecCCC
Confidence 6666668889999999988888776 57888888877765443 2 2221 23 89999999965666666889
Q ss_pred cEEEEeCCcceeee-e---ecCCCCCeEEEEEcCCCCEEEEEeCC---ccEEEEECCCCCCCCC-CccCC-ccceeeecc
Q 006909 423 KLRILDGVDVIHKF-K---GLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELCFPSS-KQKNS-VRSCEHFFS 493 (626)
Q Consensus 423 ~i~iwd~~~~~~~~-~---~~~~~~~v~~~~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~-~~~~~-~~~~~~~~~ 493 (626)
.|.+.|........ . ...-......+.++|+|.++...... +.+...|..++..... ..... ......+.|
T Consensus 183 ~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p 262 (381)
T COG3391 183 TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP 262 (381)
T ss_pred eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence 99999965432221 1 11123445678899999977765543 5888888887633222 11111 223345667
Q ss_pred CCcEEEEecC
Q 006909 494 EGVSVAVQWP 503 (626)
Q Consensus 494 ~g~~~av~~s 503 (626)
+|...-++-+
T Consensus 263 ~g~~~yv~~~ 272 (381)
T COG3391 263 AGKAAYVANS 272 (381)
T ss_pred CCCEEEEEec
Confidence 7766555533
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0012 Score=68.38 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=78.7
Q ss_pred CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeE-EEEEeeCCCEEEEEecCCcEEEEEcCCCcee
Q 006909 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS-AICYIPDGKGFIVGSITGTCHFYKASGNDLK 385 (626)
Q Consensus 307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~-~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~ 385 (626)
....+.-+.|+| .-.++|.+..+|.|.+..+.-.++..+.-+...++ +++|.|||+.+++|-.||+|++.|+..+...
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 455688899999 89999999999999999988777777775666666 9999999999999999999999999987764
Q ss_pred eeEEeeccccccCCCCeEEEEEcCC
Q 006909 386 LEKVDFHDRKKTSGNKITGIQFSRD 410 (626)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~~l~~s~~ 410 (626)
... .......|+++.|.+.
T Consensus 98 ~~~------~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 98 VSF------LFSVETDISKGIWDRI 116 (665)
T ss_pred ecc------ccccccchheeecccc
Confidence 331 1222367888888753
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.27 E-value=0.23 Score=51.80 Aligned_cols=183 Identities=11% Similarity=0.147 Sum_probs=95.9
Q ss_pred cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec---CCCCe-----EEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYV-----TCVQFNPIDDNYFISGSIDGKVRIWGVCE 340 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v-----~~~~~~p~~~~~l~s~s~dg~v~iwd~~~ 340 (626)
+.|.++.|..+..|+....||.++++|+.... ...+. ....| ....+.. +| .++ -..++.+.+..--.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~G-ivv-Lt~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NG-IVV-LTGNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC-CC-EEE-ECCCCeEEEEeCcc
Confidence 89999999998888899999999999997433 11111 11122 2222222 33 222 23345554443222
Q ss_pred Ce-EE-EeccCCCCeE---------E-EEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc
Q 006909 341 KR-VV-DWADVRDVIS---------A-ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 408 (626)
Q Consensus 341 ~~-~~-~~~~~~~~i~---------~-i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 408 (626)
.. .. .......... . ..++.+....+....++.+.+.+-..... ....+++..|+.|
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-----------i~~~~~i~~iavS 225 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-----------IDSDGPIIKIAVS 225 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-----------ccCCCCeEEEEEC
Confidence 21 11 1111111000 0 22333444444444445555333222100 0112689999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 409 RDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
|+| ++++.-..+|.+.+.... +....+... .......+.|.-+...++.- ...|.+..
T Consensus 226 png-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 226 PNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 998 689988999999998743 333333322 23466677787554443333 33455554
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.21 E-value=0.023 Score=62.74 Aligned_cols=135 Identities=19% Similarity=0.264 Sum_probs=90.9
Q ss_pred EEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEee------CCCCEEEEEeCCCcEEEEeCCCC--eEEE----eccCCC
Q 006909 284 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP------IDDNYFISGSIDGKVRIWGVCEK--RVVD----WADVRD 351 (626)
Q Consensus 284 s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p------~~~~~l~s~s~dg~v~iwd~~~~--~~~~----~~~~~~ 351 (626)
.......|+-.|++.|+.+..+.....+.-..+.| .++...+.|-.+..+..||.|-. +++. ......
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 33456789999999999999887443332333333 12344566777888999998853 2332 123445
Q ss_pred CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909 352 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 428 (626)
Q Consensus 352 ~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd 428 (626)
..+|++-+.+| +||+|+.+|.||+||--+.+ .....++-+.+|.+|..+.|| +++++.+ +..+.+++
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~-------AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR-------AKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLID 645 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccchh-------hhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEE
Confidence 67888888888 89999999999999954321 122233446899999999998 4555444 55666766
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.12 E-value=0.23 Score=46.27 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=68.5
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCC-eEEEE
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAIC 357 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-i~~i~ 357 (626)
.++++.|+..|.+++.+..+|.....|..-+.|.+-+....++..+..|+.|++.+..|.++...+......+. ..+-+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~ 142 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV 142 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence 45799999999999999999988888875555554433333899999999999999999988776654333332 33445
Q ss_pred EeeCCCEEEEEecCCcEEEEE
Q 006909 358 YIPDGKGFIVGSITGTCHFYK 378 (626)
Q Consensus 358 ~sp~g~~l~~g~~dg~i~i~d 378 (626)
..|-...|.++...|.+.--.
T Consensus 143 i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 143 IAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred ecCCCceEEEEeccceEEEEc
Confidence 556333444455555544333
No 361
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.014 Score=59.56 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=98.1
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC-------EEEEEecCCcEEEEEcCCCceeeeEEeeccccc
Q 006909 324 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-------GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 396 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-------~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 396 (626)
|.++.....++-.|+..|+++..-.....|+-+.+.|+.+ .-++|-.+..|.-||.+-..... ..-.+.+..
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k-l~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK-LAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce-eeeeecccc
Confidence 3445555678888999999887555555588888888754 23567778889999987443311 111122222
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 397 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 397 ~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
.......|++-..+| +|++|+.+|.|++||-......-..++-..+|..+..+.+|++|+..+ +..+.+-++.
T Consensus 428 ~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 334566777777776 899999999999999532222222334677899999999999998776 5566666653
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0041 Score=64.47 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=77.3
Q ss_pred CccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec-CCCCeE-EEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909 267 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343 (626)
Q Consensus 267 h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~-~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~ 343 (626)
-...|.-+.|+|.- .+|.+..+|.|.+..+. .+.+.++. +...++ +++|.| +|+.++.|-.||+|++.|+.++..
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence 34568889999975 89999999999999998 78888887 777777 999999 999999999999999999998876
Q ss_pred EEe--ccCCCCeEEEEEee
Q 006909 344 VDW--ADVRDVISAICYIP 360 (626)
Q Consensus 344 ~~~--~~~~~~i~~i~~sp 360 (626)
+.- ......|.++-|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 654 45566777777763
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.86 E-value=0.083 Score=57.44 Aligned_cols=186 Identities=12% Similarity=0.091 Sum_probs=98.8
Q ss_pred cCccceEEEEEcCCC-eEEEEe------CCC--cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCC------
Q 006909 266 GHKGDVLDLAWSNSN-YLLSCS------MDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------ 330 (626)
Q Consensus 266 ~h~~~V~~l~~s~~~-~l~s~s------~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~d------ 330 (626)
+....+...+++|+| .++... .|. .|.+++.. +.. ..+-.....+.-.|+| ++..+.+.+..
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRV 423 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECC-CCCceEEEecCcceEEE
Confidence 333467888999998 444332 243 45555543 222 2222223478889999 87777666532
Q ss_pred ------CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEE---EEcCCCceeee-EEeeccccccCCC
Q 006909 331 ------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF---YKASGNDLKLE-KVDFHDRKKTSGN 400 (626)
Q Consensus 331 ------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i---~d~~~~~~~~~-~~~~~~~~~~~~~ 400 (626)
+.+.+.++..+.... .....|..+.|+|||..++... +|.|++ -....+...+. ...+. .....
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~---~~l~~ 497 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG---PGLGD 497 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee---cccCC
Confidence 233333444433332 3456799999999999988866 467766 33233332111 01111 11123
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEe--CCcceeee-eecCCCCCeEEEEEcCCCCEEEEEeCCc
Q 006909 401 KITGIQFSRDESQRIMITSEDSKLRILD--GVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDC 464 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~dg~i~iwd--~~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~s~s~dg 464 (626)
.+.++.|.+++ . |+++..++...+|. +.-..... .......++..++-+++ .|+....++
T Consensus 498 ~~~~l~W~~~~-~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 498 TAVSLDWRTGD-S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred ccccceEecCC-E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 46889999997 3 45655555555554 32221111 22112455666665542 344444455
No 364
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.86 E-value=0.59 Score=50.13 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=91.6
Q ss_pred CeEEEEeCCCcEEEeccCCCeeeEeecCCCC------eE-EEEEeeCCCCEEEEEe---------CCCcEEEEeCCCCeE
Q 006909 280 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------VT-CVQFNPIDDNYFISGS---------IDGKVRIWGVCEKRV 343 (626)
Q Consensus 280 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~------v~-~~~~~p~~~~~l~s~s---------~dg~v~iwd~~~~~~ 343 (626)
+.++.++.++.|.-+|.++|+.+..+..... +. ...+. +..++.++ .++.|..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 6888888999999999999999988764332 11 12222 24455554 367889999988875
Q ss_pred EEeccCC-C--------------------Ce-EEEEEeeCCCEEEEEecCC------------------cEEEEEcCCCc
Q 006909 344 VDWADVR-D--------------------VI-SAICYIPDGKGFIVGSITG------------------TCHFYKASGND 383 (626)
Q Consensus 344 ~~~~~~~-~--------------------~i-~~i~~sp~g~~l~~g~~dg------------------~i~i~d~~~~~ 383 (626)
+=..... . .+ .+..+.+.+..+++++.++ .+.-+|..+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 5322110 0 01 1345555667888887665 68889998888
Q ss_pred eeeeEEee-cccc--ccCCCCe-EEEEEcCCC--CcEEEEEeCCCcEEEEeCCcceeeeee
Q 006909 384 LKLEKVDF-HDRK--KTSGNKI-TGIQFSRDE--SQRIMITSEDSKLRILDGVDVIHKFKG 438 (626)
Q Consensus 384 ~~~~~~~~-~~~~--~~~~~~i-~~l~~s~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~ 438 (626)
........ +... .....++ ..+. .-++ ...+++++.+|.+..+|..+.......
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 76542111 1000 0000111 1111 0122 125778888999999998876655543
No 365
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.66 E-value=0.19 Score=54.66 Aligned_cols=195 Identities=16% Similarity=0.170 Sum_probs=104.6
Q ss_pred eEEEEEcCCCeEEEEeCC------CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCc-----EEEEeCC
Q 006909 271 VLDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-----VRIWGVC 339 (626)
Q Consensus 271 V~~l~~s~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~-----v~iwd~~ 339 (626)
-.+++..++...++|+.| .++..||..+++-...-.-...-........++.+.++|+.||. |-.||..
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence 344555555577888888 35778888877754432222222222222227889999999864 7788887
Q ss_pred CCeEEEeccCCCCeEEEEE-eeCCCEEEEEecCC------cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCC
Q 006909 340 EKRVVDWADVRDVISAICY-IPDGKGFIVGSITG------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 412 (626)
Q Consensus 340 ~~~~~~~~~~~~~i~~i~~-sp~g~~l~~g~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~ 412 (626)
+.+-............... .-+|+..++|+.++ ++..||..++...... .+... ..-..++...+
T Consensus 405 ~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~-~M~~~-----R~~~g~a~~~~-- 476 (571)
T KOG4441|consen 405 TNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA-PMNTR-----RSGFGVAVLNG-- 476 (571)
T ss_pred CCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC-Ccccc-----cccceEEEECC--
Confidence 7654333323222222222 34777888888654 5678888877654321 11111 11122343333
Q ss_pred cEEEEEeCCC-----cEEEEeCCcceeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCc-----cEEEEECCCC
Q 006909 413 QRIMITSEDS-----KLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL 474 (626)
Q Consensus 413 ~~l~~~s~dg-----~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg-----~I~iwd~~~~ 474 (626)
.++++|+.|+ +|..||..+..-.... ......-..++ .-+++..+.|+.|| +|-.||..+.
T Consensus 477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCccccceeEEcCCCCC
Confidence 6788888776 3677876543222221 11111111112 12566677777665 4566655543
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.65 E-value=0.0038 Score=39.41 Aligned_cols=36 Identities=42% Similarity=0.752 Sum_probs=31.2
Q ss_pred CceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEec
Q 006909 260 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ 295 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd 295 (626)
+...+..|...|.++.|++.+ .+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456667899999999999875 899999999999996
No 367
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.57 E-value=0.51 Score=45.17 Aligned_cols=165 Identities=10% Similarity=0.154 Sum_probs=110.4
Q ss_pred ccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909 265 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 341 (626)
Q Consensus 265 ~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~ 341 (626)
.|-...|.++.|+|+. .|++......-.||=...|+.+.++. .-.....+.+.. ++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 3445569999999986 77777777777888777899998885 223445677776 6677777677888888876543
Q ss_pred e-EEE---------eccC-CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee--EEeecc-ccccCCCCeEEEEE
Q 006909 342 R-VVD---------WADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--KVDFHD-RKKTSGNKITGIQF 407 (626)
Q Consensus 342 ~-~~~---------~~~~-~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~--~~~~~~-~~~~~~~~i~~l~~ 407 (626)
. ... ...+ ....-.++|.|....|.++-.-.-+.||.+........ ....+. ...-.-..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2 111 1112 45677899999999999998888888887764332211 000000 00011245778889
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCC
Q 006909 408 SRDESQRIMITSEDSKLRILDGV 430 (626)
Q Consensus 408 s~~~~~~l~~~s~dg~i~iwd~~ 430 (626)
.+....+++.+.+++.+.-.|..
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC
Confidence 87765677778888888888755
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.51 E-value=0.22 Score=54.20 Aligned_cols=142 Identities=11% Similarity=0.102 Sum_probs=77.8
Q ss_pred eEEEEEcCCC-eEEEEeCC------------CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEE--
Q 006909 271 VLDLAWSNSN-YLLSCSMD------------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI-- 335 (626)
Q Consensus 271 V~~l~~s~~~-~l~s~s~d------------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~i-- 335 (626)
.+.-.|+|+| .|++.+.. +.+.+.++..+.... .....|..+.|+| +|..++... ++.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence 6667888885 55554322 233333444333322 3356799999999 999888766 577777
Q ss_pred -EeCCCCeEEE-----e-ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEc--CCCceeeeEEeeccccccCCCCeEEEE
Q 006909 336 -WGVCEKRVVD-----W-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKA--SGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 336 -wd~~~~~~~~-----~-~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
-....+...- + ......+.++.|..++.+ +++..++...+|.+ .+..... + .. .....++..++
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~--~--~~--~n~~~~v~~va 547 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDA--L--PS--RNLSAPVVAVA 547 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEecCCccccc--c--CC--CCccCceEEEe
Confidence 4434444111 1 223344688999999984 46665554445544 3322111 0 00 01125666776
Q ss_pred EcCCCCcEEEEEeCCCcEEE
Q 006909 407 FSRDESQRIMITSEDSKLRI 426 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~i 426 (626)
-+++ .++++..++.+.+
T Consensus 548 a~~~---~iyv~~~~g~~~l 564 (591)
T PRK13616 548 ASPS---TVYVTDARAVLQL 564 (591)
T ss_pred cCCc---eEEEEcCCceEEe
Confidence 6653 3555555664444
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.48 E-value=1 Score=44.72 Aligned_cols=187 Identities=13% Similarity=0.060 Sum_probs=105.4
Q ss_pred EEcCCC--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE-EEecc---
Q 006909 275 AWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWAD--- 348 (626)
Q Consensus 275 ~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~--- 348 (626)
.|.++. ++.+--..+.|.-|+..+++. ..+.+...+.++.... .+..|+++. .-+.+++...+.. ..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 345543 444555667888888875543 4455555556665554 455555544 3466777665544 22111
Q ss_pred --CCCCeEEEEEeeCCCEEEEEec-----------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 349 --VRDVISAICYIPDGKGFIVGSI-----------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 349 --~~~~i~~i~~sp~g~~l~~g~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
.....+.+...|+|.+.+.... -|.++.++.. +.. .....- +-..-++|+||||+..++
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~-~~l~~~------~~~~~NGla~SpDg~tly 178 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGV-VRLLDD------DLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCE-EEeecC------cEEecCceEECCCCCEEE
Confidence 1244667888899876554333 1334444432 211 111110 013456899999996555
Q ss_pred EEEeCCCcEEEEeCCc-------ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCc-cEEEEECCC
Q 006909 416 MITSEDSKLRILDGVD-------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC-RVYVWNYDE 473 (626)
Q Consensus 416 ~~~s~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg-~I~iwd~~~ 473 (626)
++=+..+.|.-|+... ....+......+..-.++...+|.+.+++-.+| .|.+|+.+.
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG 244 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG 244 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC
Confidence 5556668888887541 111111112345666777888888876555554 899999883
No 370
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.46 E-value=1.4 Score=45.65 Aligned_cols=184 Identities=10% Similarity=0.138 Sum_probs=99.5
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC---C----------------
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE---K---------------- 341 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~---~---------------- 341 (626)
.++.-+.||++.+++-+.......+..---...+.+.+ ..+.|++++.+..+..|.... .
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~ 225 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS 225 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence 78889999999999987655444444322334567777 778888888888888886421 0
Q ss_pred -eEEE---eccCCCCeEEEEEee---CCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEE------c
Q 006909 342 -RVVD---WADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF------S 408 (626)
Q Consensus 342 -~~~~---~~~~~~~i~~i~~sp---~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~------s 408 (626)
+... .......+..|..-. ....+++-+ ..++.+.+..+ .... ...+.. .+.....| .
T Consensus 226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G-~l~~-~krLd~------~p~~~~~Y~~~~~~~ 296 (418)
T PF14727_consen 226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNG-SLRF-QKRLDY------NPSCFCPYRVPWYNE 296 (418)
T ss_pred cccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCC-eEEE-EEecCC------ceeeEEEEEeecccC
Confidence 0000 112223344444322 222232222 33455554433 2211 111111 11111112 2
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 409 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 409 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+.....+++++.++++.||.-.+..-........-.+....|..-...|++-+.+|.+.+--+.+.
T Consensus 297 ~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 297 PSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred CCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 222235899999999999985554443333111112223334344567888888999998888764
No 371
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.38 E-value=0.23 Score=51.96 Aligned_cols=134 Identities=11% Similarity=0.159 Sum_probs=71.6
Q ss_pred CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC------------eEEEec
Q 006909 280 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK------------RVVDWA 347 (626)
Q Consensus 280 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~------------~~~~~~ 347 (626)
|.|+....++.|.+||+.+++.++.+.... |..+.|++ ++++++..+. ..+.+++.... ......
T Consensus 117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~ 193 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIH 193 (443)
T ss_dssp SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE
T ss_pred CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEE
Confidence 534433444589999999999999998665 99999999 8999988875 46888876554 344444
Q ss_pred cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
.....|.+.+|..+ .++-.+.. .++. +.+++...- ..- ..++.=+.+.+.. ..+.....|+.|..+
T Consensus 194 E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i--~~l------d~~~yllgy~~~~-~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 194 EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGII--AHL------DKPLYLLGYLPKE-NRLYLIDRDGNVISY 259 (443)
T ss_dssp EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEE--EE-------SS--EEEEEETTT-TEEEEE-TT--EEEE
T ss_pred EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceE--EEc------CCceEEEEEEccC-CEEEEEECCCCEEEE
Confidence 44677888888765 44444444 5555 333332111 111 1455556666653 467777777777776
Q ss_pred eCC
Q 006909 428 DGV 430 (626)
Q Consensus 428 d~~ 430 (626)
.+.
T Consensus 260 ~ld 262 (443)
T PF04053_consen 260 ELD 262 (443)
T ss_dssp E--
T ss_pred EEC
Confidence 644
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.34 E-value=1.2 Score=43.73 Aligned_cols=138 Identities=13% Similarity=0.148 Sum_probs=85.6
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-------------
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD------------- 345 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~------------- 345 (626)
+..|+.|+.+| +.++++..............|..+...| +-+.+++-+ |+.++++++..-....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 34888898888 8999984343334444444599999998 777777665 5999999986533222
Q ss_pred --eccCCCCeEEEE--EeeCCCEEEEEecCCcEEEEEcCCCce----eeeEEeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909 346 --WADVRDVISAIC--YIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 417 (626)
Q Consensus 346 --~~~~~~~i~~i~--~sp~g~~l~~g~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~ 417 (626)
.......+...+ -.+.+...++......|.+|....... ....+... ..+..++|.++ .++.
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~~~---~i~v 153 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFLGN---KICV 153 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEeCC---EEEE
Confidence 112223344444 123444445555566999998876422 22233332 67899999954 5666
Q ss_pred EeCCCcEEEEeCC
Q 006909 418 TSEDSKLRILDGV 430 (626)
Q Consensus 418 ~s~dg~i~iwd~~ 430 (626)
|..+ ...+.|+.
T Consensus 154 ~~~~-~f~~idl~ 165 (275)
T PF00780_consen 154 GTSK-GFYLIDLN 165 (275)
T ss_pred EeCC-ceEEEecC
Confidence 6644 47777766
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.34 E-value=1.7 Score=45.57 Aligned_cols=195 Identities=14% Similarity=0.141 Sum_probs=101.8
Q ss_pred ceEEEEEcCCC-eEE-EEeCCC----cEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC-----------c
Q 006909 270 DVLDLAWSNSN-YLL-SCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG-----------K 332 (626)
Q Consensus 270 ~V~~l~~s~~~-~l~-s~s~d~----~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg-----------~ 332 (626)
.+....++|++ +++ +.+..| +|++.|+.+++.+...-.......+.|.+ +++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeC-CCCEEEEEEeCcccccccCCCCcE
Confidence 34467889988 444 434444 59999999997765331111223499999 877776665433 3
Q ss_pred EEEEeCCCCe----EEEeccCCCC-eEEEEEeeCCCEEEEEecCC----cEEEEEcCCC---ceeeeEEeeccccccCCC
Q 006909 333 VRIWGVCEKR----VVDWADVRDV-ISAICYIPDGKGFIVGSITG----TCHFYKASGN---DLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 333 v~iwd~~~~~----~~~~~~~~~~-i~~i~~sp~g~~l~~g~~dg----~i~i~d~~~~---~~~~~~~~~~~~~~~~~~ 400 (626)
|+.|.+.+.. ++........ ...+..+++++++++....+ .+.+.++... ......+.... .+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-----~~ 278 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-----DG 278 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-----SS
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-----Cc
Confidence 7888876643 2222222222 66888999999988755433 4677777664 22222222211 12
Q ss_pred CeEEEEEcCCCCcEEEEEeC---CCcEEEEeCCccee---eeeecCCCCCeEEEEEcCCCCEEEEE-eCC--ccEEEEEC
Q 006909 401 KITGIQFSRDESQRIMITSE---DSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISI-GDD--CRVYVWNY 471 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~---dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~s~-s~d--g~I~iwd~ 471 (626)
....+... .+ .+++.+.. .+.|...++..... ......+...+.-..+...+.+|+.. ..+ ..|+++++
T Consensus 279 ~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 279 VEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp -EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred eEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence 22333333 32 44444433 35666667664431 11222244433333333445555544 334 36888998
Q ss_pred C
Q 006909 472 D 472 (626)
Q Consensus 472 ~ 472 (626)
.
T Consensus 357 ~ 357 (414)
T PF02897_consen 357 D 357 (414)
T ss_dssp T
T ss_pred C
Confidence 8
No 374
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.08 E-value=2 Score=44.22 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=58.1
Q ss_pred cceEEEEEcCCCeEEEEeCCCcEEEeccCCC-----ee---eEeecC-----CCCeEEEEEeeCCCCEEEEEeCC-----
Q 006909 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-----QC---LNVFDH-----HNYVTCVQFNPIDDNYFISGSID----- 330 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~-----~~---~~~~~~-----~~~v~~~~~~p~~~~~l~s~s~d----- 330 (626)
.....+++.+++ |+.++.....++.|.... +. +..+.. ......++|.| ++.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCcee
Confidence 355788888888 555555543444455321 11 122221 34477899999 88876655421
Q ss_pred --------------CcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEe
Q 006909 331 --------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 369 (626)
Q Consensus 331 --------------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~ 369 (626)
|.|.-++..+++...+...-.....++|+|+|+.+++-.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 345556666555444333334466899999998876644
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=0.11 Score=53.31 Aligned_cols=137 Identities=16% Similarity=0.248 Sum_probs=92.8
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCC-------EEEEEeCCCcEEEEeCCCCe--EEEec----
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-------YFISGSIDGKVRIWGVCEKR--VVDWA---- 347 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~-------~l~s~s~dg~v~iwd~~~~~--~~~~~---- 347 (626)
.|.++.....++-.|++.|+.+........|+-+.+.| +.. .-+.|-.|..|.-||.+-.. .+.+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 45566667788889999999999988666688888877 432 23345567788889987322 22211
Q ss_pred -cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909 348 -DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426 (626)
Q Consensus 348 -~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i 426 (626)
.......|.+-..+| ++++|+.+|.|++||-...... ...++.+.+|+.+..+.+| .+|+ |..+..+.+
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AK-------TAlPgLG~~I~hVdvtadG-Kwil-~Tc~tyLlL 496 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAK-------TALPGLGDAIKHVDVTADG-KWIL-ATCKTYLLL 496 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhh-------hcccccCCceeeEEeeccC-cEEE-EecccEEEE
Confidence 223445666666666 8999999999999997332221 1133446899999999998 4444 444566767
Q ss_pred Ee
Q 006909 427 LD 428 (626)
Q Consensus 427 wd 428 (626)
.+
T Consensus 497 i~ 498 (644)
T KOG2395|consen 497 ID 498 (644)
T ss_pred EE
Confidence 66
No 376
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.94 E-value=1.7 Score=41.77 Aligned_cols=166 Identities=12% Similarity=0.159 Sum_probs=99.8
Q ss_pred cccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCc
Q 006909 173 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 252 (626)
Q Consensus 173 ~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (626)
..+.+.|-+..|.++.|+|+.+.|.+......-.||=...|+.....
T Consensus 77 ~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti--------------------------------- 123 (316)
T COG3204 77 DAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI--------------------------------- 123 (316)
T ss_pred eccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe---------------------------------
Confidence 34446677777999999999998888877776666654443321110
Q ss_pred cccccCCCceeeccCccceEEEEEcCCC-eEEEEeCCCcEEEeccCCCeee----------EeecC-CCCeEEEEEeeCC
Q 006909 253 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL----------NVFDH-HNYVTCVQFNPID 320 (626)
Q Consensus 253 ~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~----------~~~~~-~~~v~~~~~~p~~ 320 (626)
.+.+ -...-.|.+..+| +.++--.++.+.++.+.....+ ....+ +.....++|.| .
T Consensus 124 ----------PL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~ 191 (316)
T COG3204 124 ----------PLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-V 191 (316)
T ss_pred ----------cccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-C
Confidence 0111 1222345555555 4444455666666655433211 11123 45678999999 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe-EEE---eccC-------CCCeEEEEEee-CCCEEEEEecCCcEEEEEcCCCc
Q 006909 321 DNYFISGSIDGKVRIWGVCEKR-VVD---WADV-------RDVISAICYIP-DGKGFIVGSITGTCHFYKASGND 383 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~~~~~-~~~---~~~~-------~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~~~ 383 (626)
.+.|+.+-.-.-+.||.+.... ... ...+ -..|.++.|++ .+..++.+..++.+.-.|..+.-
T Consensus 192 ~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 192 DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 7777777777778888765433 111 1111 12367788887 56677777788888888877653
No 377
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=0.55 Score=44.60 Aligned_cols=114 Identities=13% Similarity=0.162 Sum_probs=70.1
Q ss_pred eEEEeccCCCCeEEEEEeeCC-CEEEEEecCCc-EEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909 342 RVVDWADVRDVISAICYIPDG-KGFIVGSITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 419 (626)
Q Consensus 342 ~~~~~~~~~~~i~~i~~sp~g-~~l~~g~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s 419 (626)
+++........-..|.++|.- ..++.+-.-|+ ..++|..+.+.+.......++ ...-.=.||||| .+|.+.-
T Consensus 59 k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R-----HfyGHGvfs~dG-~~LYATE 132 (366)
T COG3490 59 KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR-----HFYGHGVFSPDG-RLLYATE 132 (366)
T ss_pred ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc-----eeecccccCCCC-cEEEeec
Confidence 333334445555667888854 44555555554 567888877765543322221 111223599998 5666664
Q ss_pred CC-----CcEEEEeCCcceee-eeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909 420 ED-----SKLRILDGVDVIHK-FKGLPKSGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 420 ~d-----g~i~iwd~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~s~s 461 (626)
.| |.|-|||.+...+. -+...|.-....+.+.+||+.|+.+.
T Consensus 133 ndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 133 NDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 44 78999998744332 23344666677899999999998874
No 378
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.76 E-value=0.19 Score=51.86 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=78.2
Q ss_pred CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceee-----e-----------------EEeeccc--------------c
Q 006909 352 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-----E-----------------KVDFHDR--------------K 395 (626)
Q Consensus 352 ~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~-----~-----------------~~~~~~~--------------~ 395 (626)
.|+.++|.++...|++|...|.+.+|....++... . ......+ .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47899999999999999999999998875432211 0 0011110 0
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee--------cCCCCCeEEEEEcC-----CC---CEEEE
Q 006909 396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG--------LPKSGSQMSASFTT-----TG---KHIIS 459 (626)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~sp-----~g---~~l~s 459 (626)
....++|++++.|.=| ++++|..+|.+.|.|++.+.-.+.. ......++++.|+. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 1135899999999876 9999999999999999866555543 12345677888852 33 56888
Q ss_pred EeCCccEEEEECC
Q 006909 460 IGDDCRVYVWNYD 472 (626)
Q Consensus 460 ~s~dg~I~iwd~~ 472 (626)
|+..|.+.+|.+.
T Consensus 161 GTn~G~v~~fkIl 173 (395)
T PF08596_consen 161 GTNSGNVLTFKIL 173 (395)
T ss_dssp EETTSEEEEEEEE
T ss_pred EeCCCCEEEEEEe
Confidence 9999999999885
No 379
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.71 E-value=0.036 Score=37.41 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=28.5
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 211 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~ 211 (626)
...|.+++|+|...+||.|..+|.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 380
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.095 Score=58.44 Aligned_cols=153 Identities=10% Similarity=-0.006 Sum_probs=93.9
Q ss_pred CCeEEEEEeeCCCEEEEEecC--CcEEEEEcCCCceeee----EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 006909 351 DVISAICYIPDGKGFIVGSIT--GTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 424 (626)
Q Consensus 351 ~~i~~i~~sp~g~~l~~g~~d--g~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i 424 (626)
-++..+...+|+...++.... -.|..||++.-..... .+..+...........++.|.|.-....++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345566666777665554433 3788999875443221 1111111111234566788998766667888899999
Q ss_pred EEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCCCCCCCccCCccceeeeccCCcEEEEecCC
Q 006909 425 RILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 504 (626)
Q Consensus 425 ~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~g~~~av~~s~ 504 (626)
++..+...............+++++|+|.|+.++.|-..|++.-|...-. .+..+.+..+-+++.++.+.|-.
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-------ik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-------IKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-------eeecccCCCcCCCcceeEEEEec
Confidence 99887644433333345677899999999999999999999988875532 11122222223345566666655
Q ss_pred CCcccc
Q 006909 505 IGTEQK 510 (626)
Q Consensus 505 ~~~~l~ 510 (626)
....++
T Consensus 254 t~eflv 259 (1405)
T KOG3630|consen 254 TQEFLV 259 (1405)
T ss_pred ceeEEE
Confidence 544443
No 381
>PHA02713 hypothetical protein; Provisional
Probab=95.52 E-value=0.54 Score=51.24 Aligned_cols=185 Identities=9% Similarity=0.084 Sum_probs=92.2
Q ss_pred CCCeEEEEeCC------CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCC-----cEEEEeCCCCeEE
Q 006909 278 NSNYLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVV 344 (626)
Q Consensus 278 ~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg-----~v~iwd~~~~~~~ 344 (626)
.+..++.|+.+ ..+..||..++.....-. ....-.+++.. ++.+.+.|+.++ ++..||..+.+=.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 33456666643 347788887765432221 11111122222 678888888764 4888998876543
Q ss_pred EeccCCCCeEE-EEEeeCCCEEEEEecCC-----------------------cEEEEEcCCCceeeeEEeeccccccCCC
Q 006909 345 DWADVRDVISA-ICYIPDGKGFIVGSITG-----------------------TCHFYKASGNDLKLEKVDFHDRKKTSGN 400 (626)
Q Consensus 345 ~~~~~~~~i~~-i~~sp~g~~l~~g~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 400 (626)
.......+... ....-+|+..++|+.++ .+..||..+....... .+.... .
T Consensus 381 ~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~~r----~ 455 (557)
T PHA02713 381 MLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWTGT----I 455 (557)
T ss_pred ECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCccc----c
Confidence 32222221111 11123677777777653 4677887766543211 111100 1
Q ss_pred CeEEEEEcCCCCcEEEEEeCC------CcEEEEeCCc-ceee-eeecC-CCCCeEEEEEcCCCCEEEEEeCCc--cEEEE
Q 006909 401 KITGIQFSRDESQRIMITSED------SKLRILDGVD-VIHK-FKGLP-KSGSQMSASFTTTGKHIISIGDDC--RVYVW 469 (626)
Q Consensus 401 ~i~~l~~s~~~~~~l~~~s~d------g~i~iwd~~~-~~~~-~~~~~-~~~~v~~~~~sp~g~~l~s~s~dg--~I~iw 469 (626)
. .+++.. +| .+.+.|+.+ ..+..||..+ ..-. ....+ .......+. -+|+..++|+.|+ .+..|
T Consensus 456 ~-~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 456 R-PGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred c-CcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhc
Confidence 1 122222 23 566666654 2467788664 2222 21111 111222222 3678888888887 66667
Q ss_pred ECCCC
Q 006909 470 NYDEL 474 (626)
Q Consensus 470 d~~~~ 474 (626)
|..+.
T Consensus 531 d~~~~ 535 (557)
T PHA02713 531 NVYTY 535 (557)
T ss_pred Ccccc
Confidence 76654
No 382
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.51 E-value=3.4 Score=42.28 Aligned_cols=153 Identities=15% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCC-eEEEE--eC----CCcEEEeccCCCeeeEeecC----CCCeEEEEEeeCCCCEEEEEeC-----------------
Q 006909 278 NSN-YLLSC--SM----DKTVRMWQVGCNQCLNVFDH----HNYVTCVQFNPIDDNYFISGSI----------------- 329 (626)
Q Consensus 278 ~~~-~l~s~--s~----d~~v~iwd~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~s~s~----------------- 329 (626)
|+| .++|+ .. -|-+.+.|-++......... ...-..+.|.| ..+.++|...
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhc
Confidence 566 55554 22 24577788777766665532 33456778888 8888887643
Q ss_pred ---CCcEEEEeCCCCeEEEeccCC---CCeEEEEEeeC--CCEEEE-EecCCcE-EEEEcCCCceeee-EEeecccc---
Q 006909 330 ---DGKVRIWGVCEKRVVDWADVR---DVISAICYIPD--GKGFIV-GSITGTC-HFYKASGNDLKLE-KVDFHDRK--- 395 (626)
Q Consensus 330 ---dg~v~iwd~~~~~~~~~~~~~---~~i~~i~~sp~--g~~l~~-g~~dg~i-~i~d~~~~~~~~~-~~~~~~~~--- 395 (626)
..++.+||+.+.+.++..... .....+.|..+ ..+-.+ +...++| ++|....+....+ .+......
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 357999999999988766654 23556666554 333333 3334444 4444355554444 22222210
Q ss_pred ----------ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909 396 ----------KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 396 ----------~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
.....-|+.|..|.|+..+.++.=..|.|+.||+.+
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 001345899999999855555666789999999874
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=1.2 Score=42.34 Aligned_cols=184 Identities=11% Similarity=0.163 Sum_probs=101.8
Q ss_pred EEcCCCCEEEEEeC-----CCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCce
Q 006909 188 KFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 262 (626)
Q Consensus 188 ~fspdg~~Latgs~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (626)
.|||||.+|...-. -|.|-|||...+ .+.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--------------------------------------------fqrvg 155 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--------------------------------------------FQRVG 155 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--------------------------------------------cceec
Confidence 58999998887643 378999998753 23345
Q ss_pred eeccCccceEEEEEcCCCeEEEEeCCC-------------------cEEEeccCCCeeeEeec-----CCCCeEEEEEee
Q 006909 263 ELHGHKGDVLDLAWSNSNYLLSCSMDK-------------------TVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP 318 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~~l~s~s~d~-------------------~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p 318 (626)
++..|.-.-..+.|.+||.++.....| .+.+.|..+|..+.... +...|..++..+
T Consensus 156 E~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~ 235 (366)
T COG3490 156 EFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR 235 (366)
T ss_pred ccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC
Confidence 566666666778888888444332221 23333444444443321 334567777776
Q ss_pred CCCCEEEEEeCCCc-----EEEEeCCCCeEEEec--------cCCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcCCCce
Q 006909 319 IDDNYFISGSIDGK-----VRIWGVCEKRVVDWA--------DVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDL 384 (626)
Q Consensus 319 ~~~~~l~s~s~dg~-----v~iwd~~~~~~~~~~--------~~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~~~~~ 384 (626)
++..++-+-..|. -.+=-...++.+... .....|-+|+.+-+..+++..+-. +...+||..++..
T Consensus 236 -dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 236 -DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred -CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 6655554433221 111111222222221 223457778887766566655554 4567899998876
Q ss_pred eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909 385 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 428 (626)
Q Consensus 385 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd 428 (626)
...... .....++-... -+++.+.+|.+.++.
T Consensus 315 v~~a~l---------~daaGva~~~~---gf~vssg~G~~~~~s 346 (366)
T COG3490 315 VSEAAL---------PDAAGVAAAKG---GFAVSSGQGRIIFYS 346 (366)
T ss_pred Eecccc---------cccccceeccC---ceEEecCCceEEecc
Confidence 543111 12233444333 367777788888774
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.41 E-value=0.057 Score=49.38 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=78.0
Q ss_pred EEEEeCCCcEEEEeCCCCeEEE--eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 324 FISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
+...+.+|.|+-++++..+... ..-+... .....-+..+++|+.+|.|++|.............. ....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------~~e~ 103 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------GEES 103 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhc------cccc
Confidence 3344567777777665432211 0111111 111224567999999999999988733222111111 1133
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceee-eeecCCC-CCeEEEEEcCCCCEEEEE--eCCccEEEEECCCC
Q 006909 402 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKGLPKS-GSQMSASFTTTGKHIISI--GDDCRVYVWNYDEL 474 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~~~~~-~~v~~~~~sp~g~~l~s~--s~dg~I~iwd~~~~ 474 (626)
|.++.-.-+...+..+++.+|.|+.|++...... +.++ |. .++.....+..+++|+++ |.|..++.|++...
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~-h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ-HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeeecc-ccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 3333322222358889999999999997643322 2232 33 455555555666777777 77777777777653
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.18 E-value=3.1 Score=39.80 Aligned_cols=187 Identities=12% Similarity=0.043 Sum_probs=106.4
Q ss_pred EEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCc
Q 006909 184 IWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 261 (626)
Q Consensus 184 V~~l~fspdg~~Latgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (626)
.-.+.|..+|.++-+.|.-| .|+.+|+.+++.......+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~------------------------------------- 89 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR------------------------------------- 89 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------------------------------------
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-------------------------------------
Confidence 34677877888888887766 788999988654322111110
Q ss_pred eeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCC
Q 006909 262 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 341 (626)
Q Consensus 262 ~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~ 341 (626)
----.++...+....-.-.++...+||..+.+.+..+.....=+.++. ++..|+...-...++++|..+-
T Consensus 90 -------~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 90 -------YFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp ---------EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-
T ss_pred -------ccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCcceEEEc---CCCEEEEECCccceEEECCccc
Confidence 111122333333333444568899999999999999987777778874 6666766666678999998765
Q ss_pred eEEEe---ccCC---CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccc---------cccCCCCeEEEE
Q 006909 342 RVVDW---ADVR---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---------KKTSGNKITGIQ 406 (626)
Q Consensus 342 ~~~~~---~~~~---~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~i~~l~ 406 (626)
+.... .... ..++-+.|. +|...|=.=....|...|..++..... +.+.+- ......-.++|+
T Consensus 160 ~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~-iDls~L~~~~~~~~~~~~~~dVLNGIA 237 (264)
T PF05096_consen 160 KEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGW-IDLSGLRPEVGRDKSRQPDDDVLNGIA 237 (264)
T ss_dssp SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEE-EE-HHHHHHHTSTTST--TTS-EEEEE
T ss_pred ceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEE-EEhhHhhhcccccccccccCCeeEeEe
Confidence 44332 2222 235556664 565444444556777777777765432 221111 111245688999
Q ss_pred EcCCCCcEEEEEe
Q 006909 407 FSRDESQRIMITS 419 (626)
Q Consensus 407 ~s~~~~~~l~~~s 419 (626)
+.|....++++|-
T Consensus 238 yd~~~~~l~vTGK 250 (264)
T PF05096_consen 238 YDPETDRLFVTGK 250 (264)
T ss_dssp EETTTTEEEEEET
T ss_pred EeCCCCEEEEEeC
Confidence 9998766666653
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.44 Score=53.24 Aligned_cols=98 Identities=16% Similarity=0.278 Sum_probs=70.6
Q ss_pred CeEEEEeCCCcEEEeccCCCee--eEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEE-
Q 006909 280 NYLLSCSMDKTVRMWQVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISA- 355 (626)
Q Consensus 280 ~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~- 355 (626)
+.++.|+..|.|-..|+.++-. .+--....+|++++|+. +|..++.|-.+|.|.+||+..+++.+ +..+..+.+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 3688888889999888876422 22223567999999999 99999999999999999999877655 3344444333
Q ss_pred --EEEeeCCCEEEEEecCCcEEEEEcC
Q 006909 356 --ICYIPDGKGFIVGSITGTCHFYKAS 380 (626)
Q Consensus 356 --i~~sp~g~~l~~g~~dg~i~i~d~~ 380 (626)
+.+..++..++++...|. +|.+.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 344456667888877776 56543
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.12 E-value=0.084 Score=35.66 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=30.0
Q ss_pred cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC
Q 006909 348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 381 (626)
Q Consensus 348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~ 381 (626)
.....|.+++|+|....+|+++.+|.|.+|.++.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 4456799999999999999999999999999843
No 388
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.99 E-value=4.7 Score=40.87 Aligned_cols=172 Identities=16% Similarity=0.168 Sum_probs=82.5
Q ss_pred CcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeC---CC-cEEEEeC--CCCeEEEeccC--CCCeEEEEEee
Q 006909 289 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI---DG-KVRIWGV--CEKRVVDWADV--RDVISAICYIP 360 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~---dg-~v~iwd~--~~~~~~~~~~~--~~~i~~i~~sp 360 (626)
+.|.--|+.+|+....+....++..+.|+|.++..|+.|-. +. .-|||-+ .+.....+..+ ...+..=-|.|
T Consensus 168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP 247 (386)
T ss_dssp EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence 34666688888888888888899999999988888887643 22 1356644 44444333322 23344556889
Q ss_pred CCCEEEEEec-----CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCC-------------
Q 006909 361 DGKGFIVGSI-----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS------------- 422 (626)
Q Consensus 361 ~g~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg------------- 422 (626)
||..|.--+. +..|.-+|+.+..... + ... .....+-.++|| .+++-=+.|.
T Consensus 248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~-~~~------p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~~~ 317 (386)
T PF14583_consen 248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--L-MEM------PWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYKIE 317 (386)
T ss_dssp TSS-EEEEEEETTT--EEEEEE-TTT--EEE--E-EEE-------SEEEEEE-TTS-SEEEEEE----------------
T ss_pred CCCEEEEEeecCCCCceEEEeeCCCCCCceE--E-EeC------CceeeeEEcCCC-CEEEecCCCCCccccccccceec
Confidence 9987765322 3356666776654321 1 111 133455567786 4444333331
Q ss_pred ---cEEEEeCCcceee-eeecC-------C--CCCeEEEEEcCCCCEEEEEeC-CccEEEEE
Q 006909 423 ---KLRILDGVDVIHK-FKGLP-------K--SGSQMSASFTTTGKHIISIGD-DCRVYVWN 470 (626)
Q Consensus 423 ---~i~iwd~~~~~~~-~~~~~-------~--~~~v~~~~~sp~g~~l~s~s~-dg~I~iwd 470 (626)
-|++++....... +..+. + ...-....|+|||++|+-.|+ .|...||-
T Consensus 318 ~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 318 NDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp ---EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 3455665532221 11110 0 112245789999999876664 56555553
No 389
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.89 E-value=8.4 Score=43.25 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=89.8
Q ss_pred CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee
Q 006909 308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 387 (626)
Q Consensus 308 ~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~ 387 (626)
......+..+-..++.|+-... ..||+++-. +....+... ..++....+.+...+++++.++.+...++....+...
T Consensus 448 ~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~ 524 (1096)
T KOG1897|consen 448 STDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREV 524 (1096)
T ss_pred cccCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccceeee
Confidence 3344445555445555554443 457887754 333333333 3344444445555788887777777777765552111
Q ss_pred EEeeccccccCCCCeEEEEEcCC--CCc---EEEEEeCCCcEEEEeC-Ccceee----eeecCCCCCeEEEEEcCCCCEE
Q 006909 388 KVDFHDRKKTSGNKITGIQFSRD--ESQ---RIMITSEDSKLRILDG-VDVIHK----FKGLPKSGSQMSASFTTTGKHI 457 (626)
Q Consensus 388 ~~~~~~~~~~~~~~i~~l~~s~~--~~~---~l~~~s~dg~i~iwd~-~~~~~~----~~~~~~~~~v~~~~~sp~g~~l 457 (626)
. .......|.|+.++|- +++ ++++|..+..+.+.-. .+.... +.+..-...|.-..|-.|..+|
T Consensus 525 -~-----~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yL 598 (1096)
T KOG1897|consen 525 -S-----HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYL 598 (1096)
T ss_pred -e-----eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEE
Confidence 1 1112367999999875 333 7888888776665432 111111 1111123345555666678999
Q ss_pred EEEeCCccEEEEECCCC
Q 006909 458 ISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 458 ~s~s~dg~I~iwd~~~~ 474 (626)
.++..||.+.-|.++..
T Consensus 599 lvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 599 LVALGDGALLYFVLDIN 615 (1096)
T ss_pred EEEcCCceEEEEEEEcc
Confidence 99999999877766544
No 390
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.72 E-value=0.13 Score=47.12 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=41.2
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeec-CC-CCeEEEEEeeCCCCEEEEE--eCCCcEEEEeCC
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFD-HH-NYVTCVQFNPIDDNYFISG--SIDGKVRIWGVC 339 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~-~~-~~v~~~~~~p~~~~~l~s~--s~dg~v~iwd~~ 339 (626)
+..+++.|+.|+.|++.-++.+.... |. .++.....+. .+..++++ |.|..++.|++.
T Consensus 116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence 78899999999999999888777665 44 3455555444 55566666 666677777664
No 391
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.64 E-value=8.7 Score=43.38 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=72.5
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCCe---------EEEEEee---------------CCCCEEEEEeCCCcEE
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYV---------TCVQFNP---------------IDDNYFISGSIDGKVR 334 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v---------~~~~~~p---------------~~~~~l~s~s~dg~v~ 334 (626)
++.|+.++.++.|.-.|..+|+.+..+.....+ ..+.+.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 568888888899999999999998887533321 2233321 1345788889999999
Q ss_pred EEeCCCCeEEEeccCCCCeE-------------EEEEee--CCCEEEEEec----------CCcEEEEEcCCCceeee
Q 006909 335 IWGVCEKRVVDWADVRDVIS-------------AICYIP--DGKGFIVGSI----------TGTCHFYKASGNDLKLE 387 (626)
Q Consensus 335 iwd~~~~~~~~~~~~~~~i~-------------~i~~sp--~g~~l~~g~~----------dg~i~i~d~~~~~~~~~ 387 (626)
-.|.++++.+-.....+.+. .+.-.| .+..+++|+. +|.|+-||..+++....
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 99999988775433322221 111112 2346666643 68899999999987654
No 392
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.57 E-value=5.4 Score=39.65 Aligned_cols=145 Identities=12% Similarity=0.072 Sum_probs=83.0
Q ss_pred CeEEEEeCCCcEEEeccC-CCeeeEe----ec-CCCCeE-EEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccC---
Q 006909 280 NYLLSCSMDKTVRMWQVG-CNQCLNV----FD-HHNYVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV--- 349 (626)
Q Consensus 280 ~~l~s~s~d~~v~iwd~~-~~~~~~~----~~-~~~~v~-~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--- 349 (626)
..+.+-|.||.+.-..+. .|+.... |. ...++. .-++.. .+..++..+.+|.|+-.|+...........
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence 357777788888877775 4444322 11 122222 334444 556666678899999999877653321100
Q ss_pred ----------CCCeEEEEEeeCCCEEEEEec--------CC--cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 350 ----------RDVISAICYIPDGKGFIVGSI--------TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 350 ----------~~~i~~i~~sp~g~~l~~g~~--------dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
.+.-.-+++++..+.|++.-. ++ .|-+||+.+.+... .+.+. .++.+|+.+.
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~-Ri~l~-------~~~~Si~Vsq 298 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA-RIPLE-------HPIDSIAVSQ 298 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE-EEEEE-------EEESEEEEES
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE-EEeCC-------CccceEEEcc
Confidence 123445777776666665322 22 46666777766533 33333 3577999999
Q ss_pred CCCcEEEEE-eCCCcEEEEeCCcce
Q 006909 410 DESQRIMIT-SEDSKLRILDGVDVI 433 (626)
Q Consensus 410 ~~~~~l~~~-s~dg~i~iwd~~~~~ 433 (626)
+..-+|++. ..++.+.+||..+..
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT--
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 875566655 457999999987543
No 393
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=0.49 Score=53.14 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=88.8
Q ss_pred ceEEEEEcCCC---eEEEEeCCCcEEEeccCCCeee--------Ee----ecCCCCeEEEEEeeCCCCEEEEEeCCCcEE
Q 006909 270 DVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCL--------NV----FDHHNYVTCVQFNPIDDNYFISGSIDGKVR 334 (626)
Q Consensus 270 ~V~~l~~s~~~---~l~s~s~d~~v~iwd~~~~~~~--------~~----~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~ 334 (626)
.|..+...+|. .++..+.+-.|..||+++-... +. +.......++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44455555554 3344445557888998643221 11 123445678899995556677778899999
Q ss_pred EEeCCCC-eEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 335 IWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 335 iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
+.-+... ..+.........++++|+|.|+.+++|...|++.-|....... . ..+.........|.+++|-...
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-~---~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-S---EIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee-e---cccCCCcCCCcceeEEEEecce
Confidence 8876542 2333346677899999999999999999999999987654311 1 1111111114789999998763
No 394
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.50 E-value=5.5 Score=39.38 Aligned_cols=156 Identities=14% Similarity=0.195 Sum_probs=77.3
Q ss_pred CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCcee
Q 006909 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 385 (626)
Q Consensus 307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~ 385 (626)
....+..+.-++ ++.++++++....+.-||--... ..........|.+|.|.|++...+++ ..|.|++=+.......
T Consensus 143 ~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 456788888888 99988888765555677754322 22334456889999999998765544 8888888772221111
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE-EeCC-cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 006909 386 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI-LDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i-wd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
.... .. ........+..++|.+++ ...++| ..|.+.+ -|.. +-.+.-....-...+..+.|.+..+-++. +.+
T Consensus 221 w~~~-~~-~~~~~~~~~ld~a~~~~~-~~wa~g-g~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~ 295 (302)
T PF14870_consen 221 WSEP-II-PIKTNGYGILDLAYRPPN-EIWAVG-GSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQD 295 (302)
T ss_dssp E----B--TTSS--S-EEEEEESSSS--EEEEE-STT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--ST
T ss_pred cccc-cC-CcccCceeeEEEEecCCC-CEEEEe-CCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCC
Confidence 1110 01 011223458999999885 455544 4554443 2322 22222222234567888888765555554 468
Q ss_pred ccEEEE
Q 006909 464 CRVYVW 469 (626)
Q Consensus 464 g~I~iw 469 (626)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 877655
No 395
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.44 E-value=4.8 Score=38.52 Aligned_cols=186 Identities=8% Similarity=0.075 Sum_probs=104.5
Q ss_pred cceEEEEEcCCC-eEEEEeCCC--cEEEeccCCCeeeEeecCCC--CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006909 269 GDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 343 (626)
Q Consensus 269 ~~V~~l~~s~~~-~l~s~s~d~--~v~iwd~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~ 343 (626)
.-...+.|.+++ ++-+.+.-| .|+.+|+.+++......... .-..++.. ++.++...=.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 455678886667 455666655 69999999999887765333 33455554 444555555678999999998777
Q ss_pred EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909 344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 423 (626)
Q Consensus 344 ~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~ 423 (626)
+........-..++ .+|+.|+.+.....++++|..+.+.... +..... ...-..++-+.|.. | ...|-.=....
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~-i~V~~~-g~pv~~LNELE~i~-G-~IyANVW~td~ 196 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT-IQVTDN-GRPVSNLNELEYIN-G-KIYANVWQTDR 196 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE-EE-EET-TEE---EEEEEEET-T-EEEEEETTSSE
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEE-EEEEEC-CEECCCcEeEEEEc-C-EEEEEeCCCCe
Confidence 76555555555666 6788899988889999999877654332 222211 11123445555552 2 33333334444
Q ss_pred EEEEeCCcce-----------eeeee----cCCCCCeEEEEEcCCCCEEEEEeC
Q 006909 424 LRILDGVDVI-----------HKFKG----LPKSGSQMSASFTTTGKHIISIGD 462 (626)
Q Consensus 424 i~iwd~~~~~-----------~~~~~----~~~~~~v~~~~~sp~g~~l~s~s~ 462 (626)
|...|..+.. ..... .....-.+.+++.|..+.+...+.
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 4445533221 11100 112456799999987766655543
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.43 E-value=2.6 Score=44.39 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=75.8
Q ss_pred cCccceEEEEEcCC----C-eEEEEeCCCcEEEeccC-----CCeeeEee--cC--CC--CeEEEEEeeCCCCEEEEEeC
Q 006909 266 GHKGDVLDLAWSNS----N-YLLSCSMDKTVRMWQVG-----CNQCLNVF--DH--HN--YVTCVQFNPIDDNYFISGSI 329 (626)
Q Consensus 266 ~h~~~V~~l~~s~~----~-~l~s~s~d~~v~iwd~~-----~~~~~~~~--~~--~~--~v~~~~~~p~~~~~l~s~s~ 329 (626)
|.-..|..+.|.|- - .|++....+.|.||.+. .++.+... .. .- -...+.|+| ....|++-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 45567999999974 2 67788888999999874 22222211 12 22 234678999 7777776665
Q ss_pred CCcEEEEeCC--CCeEEEeccCCCCeEEEEEeeCCCEEEEEecC-CcEEEEEcC
Q 006909 330 DGKVRIWGVC--EKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKAS 380 (626)
Q Consensus 330 dg~v~iwd~~--~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d-g~i~i~d~~ 380 (626)
...-.+++++ +.++..-....+.|.|.||.+||++|+++-.. =.-++||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 5444556654 34454555778889999999999998886544 245677654
No 397
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.41 E-value=5.1 Score=38.69 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=84.4
Q ss_pred ceEEEEEcCCC-eEEEEe---CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEe-CCCCe--
Q 006909 270 DVLDLAWSNSN-YLLSCS---MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG-VCEKR-- 342 (626)
Q Consensus 270 ~V~~l~~s~~~-~l~s~s---~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd-~~~~~-- 342 (626)
.+...++++++ .++... ....+.++.. +...........+..-.|++ ++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 68889999988 444433 2334555544 33333332334778889999 777777766666666663 23322
Q ss_pred EEE--eccCCCCeEEEEEeeCCCEEEEEe---cCCcEEEEEcCCCcee--eeEEeeccccccCCCCeEEEEEcCCCCcEE
Q 006909 343 VVD--WADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLK--LEKVDFHDRKKTSGNKITGIQFSRDESQRI 415 (626)
Q Consensus 343 ~~~--~~~~~~~i~~i~~sp~g~~l~~g~---~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 415 (626)
... .......|+++.++|||..++.-. .++.+.+--+...... ................++.+.|.+++ .++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEE
Confidence 222 222223899999999999988766 3467776655322111 11111111111224689999999997 455
Q ss_pred EEEeC
Q 006909 416 MITSE 420 (626)
Q Consensus 416 ~~~s~ 420 (626)
+.+..
T Consensus 181 V~~~~ 185 (253)
T PF10647_consen 181 VLGRS 185 (253)
T ss_pred EEeCC
Confidence 54443
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.22 E-value=4.8 Score=44.00 Aligned_cols=183 Identities=14% Similarity=0.141 Sum_probs=98.9
Q ss_pred eEEEEeCC------CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCeEEEe
Q 006909 281 YLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDW 346 (626)
Q Consensus 281 ~l~s~s~d------~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d------g~v~iwd~~~~~~~~~ 346 (626)
.++.|+.+ ..+..+|..++....... ......+++.. ++...++|+.| .++..||.+.++=...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 55566665 368888988775544332 33344555555 57888999988 3578888887763332
Q ss_pred ccCCCCeEEEEE-eeCCCEEEEEecCC-----cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeC
Q 006909 347 ADVRDVISAICY-IPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 420 (626)
Q Consensus 347 ~~~~~~i~~i~~-sp~g~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~ 420 (626)
......=..... .-+|...++|+.|| ++..||..+.+....... . ....+.....-++.+.++|+.
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m-~-------~~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM-L-------TRRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCC-C-------cceeeeEEEEECCEEEEEcCc
Confidence 222221111111 23688888999887 477788777665332100 0 111222221112367777775
Q ss_pred CC------cEEEEeCCcceeeeeec-CCCCCeEEEEEcCCCCEEEEEeCCc-----cEEEEECCCC
Q 006909 421 DS------KLRILDGVDVIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL 474 (626)
Q Consensus 421 dg------~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg-----~I~iwd~~~~ 474 (626)
++ ++..||..+..-..... .....-..++. -++...+.||.|+ +|..||..+.
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCC
Confidence 54 56677755332222111 01111111222 3577777787765 3677887765
No 399
>PHA03098 kelch-like protein; Provisional
Probab=94.20 E-value=2.6 Score=45.94 Aligned_cols=102 Identities=14% Similarity=0.186 Sum_probs=54.8
Q ss_pred CCeEEEEeCCC------cEEEeccCCCeeeEeecCC---CCeEEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCCeEE
Q 006909 279 SNYLLSCSMDK------TVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVV 344 (626)
Q Consensus 279 ~~~l~s~s~d~------~v~iwd~~~~~~~~~~~~~---~~v~~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~~~~ 344 (626)
+..++.|+.++ .+..||..+++....-... .....+.+ ++.+++.|+.+ ..+..||..+++-.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 33556665442 5778888777654332211 11222222 67788888865 34778888776543
Q ss_pred EeccCCCC--eEEEEEeeCCCEEEEEecC------CcEEEEEcCCCce
Q 006909 345 DWADVRDV--ISAICYIPDGKGFIVGSIT------GTCHFYKASGNDL 384 (626)
Q Consensus 345 ~~~~~~~~--i~~i~~sp~g~~l~~g~~d------g~i~i~d~~~~~~ 384 (626)
.......+ -.++ ..-+++..+.|+.+ ..+..||..+...
T Consensus 372 ~~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 372 EEPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred eCCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 32221111 1122 22356677777632 3578888876654
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.07 E-value=0.31 Score=54.39 Aligned_cols=99 Identities=9% Similarity=0.136 Sum_probs=69.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeE--EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeecccccc
Q 006909 320 DDNYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 397 (626)
Q Consensus 320 ~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 397 (626)
.+..++.|+..|.|-..|+.+.-. ..-....++|++++|+.+|+.++.|-.+|.|.+||...++... .+..++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~-~i~e~~a--- 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK-VITEHGA--- 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee-eeeecCC---
Confidence 455688888889999999876422 3334557899999999999999999999999999998866532 2333321
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909 398 SGNKITGIQFSRDESQRIMITSEDSK 423 (626)
Q Consensus 398 ~~~~i~~l~~s~~~~~~l~~~s~dg~ 423 (626)
+...|..+.+..++ ..++++...|.
T Consensus 174 p~t~vi~v~~t~~n-S~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQN-SKLLTSDTGGS 198 (1206)
T ss_pred ccceEEEEEEeCCC-cEEEEccCCCc
Confidence 12334444455555 46778777776
No 401
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.06 E-value=2.4 Score=35.72 Aligned_cols=102 Identities=11% Similarity=0.134 Sum_probs=71.2
Q ss_pred eEEEEeCCCcEEEeccCC--------CeeeEeecCCCCeEEEEEeeC----CCCEEEEEeCCCcEEEEeCCCCeEEEecc
Q 006909 281 YLLSCSMDKTVRMWQVGC--------NQCLNVFDHHNYVTCVQFNPI----DDNYFISGSIDGKVRIWGVCEKRVVDWAD 348 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~--------~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 348 (626)
.|+.++.-+.|.|++... ...+..+.....|++++-.+. ....|+.|+. ..+..||+....-+....
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke 90 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKE 90 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhh
Confidence 678888889999998753 335566677888998876553 3456777764 679999999888777788
Q ss_pred CCCCeEEEEEeeC---CCEEEEEecCCcEEEEEcCCCc
Q 006909 349 VRDVISAICYIPD---GKGFIVGSITGTCHFYKASGND 383 (626)
Q Consensus 349 ~~~~i~~i~~sp~---g~~l~~g~~dg~i~i~d~~~~~ 383 (626)
..+.++++.+-.- ..-++..+.+..|.-||..+.+
T Consensus 91 ~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 91 VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 8888888887432 2234444445566666665544
No 402
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.05 E-value=11 Score=40.94 Aligned_cols=54 Identities=9% Similarity=-0.028 Sum_probs=34.7
Q ss_pred cEEEEeCCCCeEEE---eccCC-------CCeEEEEEeeCCC---EEEEEecCCcEEEEEcCCCcee
Q 006909 332 KVRIWGVCEKRVVD---WADVR-------DVISAICYIPDGK---GFIVGSITGTCHFYKASGNDLK 385 (626)
Q Consensus 332 ~v~iwd~~~~~~~~---~~~~~-------~~i~~i~~sp~g~---~l~~g~~dg~i~i~d~~~~~~~ 385 (626)
.|.-.|++++++.= ...|. ....-+.+..+|+ .++.+..+|.+++.|..+++..
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 56667888887652 11221 1122233334676 7788999999999999988764
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.96 E-value=4.5 Score=42.72 Aligned_cols=152 Identities=13% Similarity=0.273 Sum_probs=91.8
Q ss_pred CccceEEEEEcCCC-eEEEEe--CCCcEEEeccCCCeeeEeecCCCCeEEEEEeeC---CCCEEEEEeCCCcEEEEeCCC
Q 006909 267 HKGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGSIDGKVRIWGVCE 340 (626)
Q Consensus 267 h~~~V~~l~~s~~~-~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~s~dg~v~iwd~~~ 340 (626)
--.+|..++|.... .+++.= .+|.+++=| ...+..| ..|..+.|.|. +...++.......|.+|.+.-
T Consensus 18 AiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 18 AIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hhccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 34578899998655 444432 233333222 2233333 45889999983 122344455678899998752
Q ss_pred -----CeEE-E-eccCCC----CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcC
Q 006909 341 -----KRVV-D-WADVRD----VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 409 (626)
Q Consensus 341 -----~~~~-~-~~~~~~----~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 409 (626)
++.. . .-.... -...+.|+|....|++-+....-.++++........ ..... .+.|.|.+|.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk-aDi~~-----~G~IhCACWT~ 165 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK-ADIKT-----SGLIHCACWTK 165 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEE-EeccC-----CceEEEEEecC
Confidence 2211 1 111111 234678999998888887777767777765544332 22222 37899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCC
Q 006909 410 DESQRIMITSEDSKLRILDGV 430 (626)
Q Consensus 410 ~~~~~l~~~s~dg~i~iwd~~ 430 (626)
||.+++++.+..=.-+|||-.
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCc
Confidence 996666666666677899843
No 404
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.91 E-value=11 Score=40.75 Aligned_cols=193 Identities=15% Similarity=0.138 Sum_probs=109.6
Q ss_pred CCeEEEEeCCCcEEEeccCCCeeeEeecCCCC--eE----------EEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEe
Q 006909 279 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--VT----------CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 346 (626)
Q Consensus 279 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--v~----------~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 346 (626)
++.++.++.++.|.-.|..+|+.+..+..... +. .+++ .+..++.++.|+.|.-.|..+++++-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 56788888888999999999999887753221 11 1222 235677788899999999999887643
Q ss_pred ccCCC-----CeEEEEEeeCCCEEEEEec------CCcEEEEEcCCCceeeeEEeecccc--------------------
Q 006909 347 ADVRD-----VISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRK-------------------- 395 (626)
Q Consensus 347 ~~~~~-----~i~~i~~sp~g~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~-------------------- 395 (626)
..... .+++--.-.++ .++++.. +|.|..+|..+++............
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 22211 11111011134 5555543 6899999999887655422211100
Q ss_pred -----ccCCCCeEEEEEcCCCCcEEEEEeCC-----C-----------cEEEEeCCccee--eeeecCCCC-------Ce
Q 006909 396 -----KTSGNKITGIQFSRDESQRIMITSED-----S-----------KLRILDGVDVIH--KFKGLPKSG-------SQ 445 (626)
Q Consensus 396 -----~~~~~~i~~l~~s~~~~~~l~~~s~d-----g-----------~i~iwd~~~~~~--~~~~~~~~~-------~v 445 (626)
......-..+.+.|.. .++..+..+ + .|.-.|..+... .++...|.. ..
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 0001111234566653 355554422 1 344455554333 333333321 12
Q ss_pred EEEEEcCCCC---EEEEEeCCccEEEEECCCCCC
Q 006909 446 MSASFTTTGK---HIISIGDDCRVYVWNYDELCF 476 (626)
Q Consensus 446 ~~~~~sp~g~---~l~s~s~dg~I~iwd~~~~~~ 476 (626)
.-+....+|+ .++.+..+|.+++.|..++..
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 2233335676 788999999999999998843
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.89 E-value=8.1 Score=39.05 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=40.0
Q ss_pred CCeEEEEEcCCC------CcEEEEEeCCCcEEEEeCCcc---eeeeee-cCCCCCeEEEEEcCCCCEEEEEeCCccEE
Q 006909 400 NKITGIQFSRDE------SQRIMITSEDSKLRILDGVDV---IHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVY 467 (626)
Q Consensus 400 ~~i~~l~~s~~~------~~~l~~~s~dg~i~iwd~~~~---~~~~~~-~~~~~~v~~~~~sp~g~~l~s~s~dg~I~ 467 (626)
..++.+.|.... ..++++.-..+.|....+... ...... ......+..+++.|||.+.++...+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 567777776432 135555555667777765422 111111 22334789999999999999888888876
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.81 E-value=7.6 Score=38.41 Aligned_cols=189 Identities=10% Similarity=0.044 Sum_probs=89.5
Q ss_pred ceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec----CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeE--
Q 006909 270 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-- 343 (626)
Q Consensus 270 ~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~-- 343 (626)
...+|.|..+..+++| ..+ +.+.-.+.|+.-..+. .......+.... ++ ....++..|.|+.- ...++.
T Consensus 63 ~l~~I~f~~~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETTEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEE-SSTTSSEE
T ss_pred eEEEEEecCCceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEe-CCCCCCee
Confidence 3566777654444444 444 3333334444433332 223334444443 33 33334445654432 223321
Q ss_pred EEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 006909 344 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 423 (626)
Q Consensus 344 ~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~ 423 (626)
.........+..+.-+++|++++++.......-||--....... .+....+|..|.|.|++ .+.+ ....|.
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-------~r~~~~riq~~gf~~~~-~lw~-~~~Gg~ 208 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-------NRNSSRRIQSMGFSPDG-NLWM-LARGGQ 208 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-------E--SSS-EEEEEE-TTS--EEE-EETTTE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-------ccCccceehhceecCCC-CEEE-EeCCcE
Confidence 22344557788888999999998887666666776543222211 12224789999999997 4444 448899
Q ss_pred EEEEeCCcceeeeee-----cCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 424 LRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 424 i~iwd~~~~~~~~~~-----~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
|+.=+.......+.. ....-.+..++|.+++...++|+ .|.++ ...+.+
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgG 262 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGG 262 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTT
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCC
Confidence 988873222222211 12333478999999888877776 44443 344444
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.76 E-value=6.9 Score=37.79 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=91.2
Q ss_pred CeEEEEEeeCCCCEEEEEe---CCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEE-cCCCcee
Q 006909 310 YVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK-ASGNDLK 385 (626)
Q Consensus 310 ~v~~~~~~p~~~~~l~s~s---~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d-~~~~~~~ 385 (626)
.+...++++ ++..++... ....++++.......... ....+...+|++++...++...+...+++. .......
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 888776655 233455555433222222 334788889999987777767666666664 2333322
Q ss_pred eeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEeCC---cc-eee----eee-cCCCCCeEEEEEcCCC
Q 006909 386 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--EDSKLRILDGV---DV-IHK----FKG-LPKSGSQMSASFTTTG 454 (626)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s--~dg~i~iwd~~---~~-~~~----~~~-~~~~~~v~~~~~sp~g 454 (626)
......... ...|+.+.+||||.+..++.. .++.|.+--+. .. ... ... ......+..++|.+++
T Consensus 102 ~~~v~~~~~----~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWPGL----RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eEEeccccc----CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 222222221 128999999999954444442 34666665321 11 111 111 1234678999999999
Q ss_pred CEEEEEeCCcc-EEE-EECCC
Q 006909 455 KHIISIGDDCR-VYV-WNYDE 473 (626)
Q Consensus 455 ~~l~s~s~dg~-I~i-wd~~~ 473 (626)
.+++.+...+. +.. .....
T Consensus 178 ~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 178 TLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred EEEEEeCCCCCceeEEEEccC
Confidence 88877765433 433 44444
No 408
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.61 E-value=0.028 Score=60.84 Aligned_cols=118 Identities=10% Similarity=0.118 Sum_probs=64.3
Q ss_pred cCCCCeEEEEEee-CCCEEEEEecCCcEEEEEcCC--CceeeeEEeeccccccCCCCeEEEEEcC---CCCcEEEEEeCC
Q 006909 348 DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSR---DESQRIMITSED 421 (626)
Q Consensus 348 ~~~~~i~~i~~sp-~g~~l~~g~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~s~---~~~~~l~~~s~d 421 (626)
+..+.+-.+.|-. +...+. -.-|.+.+|++.- ++... .+..+. ....+..+.-+.|.| +. .++..+-.+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~-~l~v~~-~~p~gs~~~~V~wcp~~~~~-~~ic~~~~~ 204 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQP-QLEVTP-ITPYGSDPQLVSWCPIAVNK-VYICYGLKG 204 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhcccccc-ceEEee-cCcCCCCcceeeeccccccc-ceeeeccCC
Confidence 4445555555532 111111 2336778888753 22211 111111 111123344555554 43 567777788
Q ss_pred CcEEEEeCCcc-eeeeeecCCCCCeEEE-----------EEcCCCCEEEEEeCCccEEEEECC
Q 006909 422 SKLRILDGVDV-IHKFKGLPKSGSQMSA-----------SFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 422 g~i~iwd~~~~-~~~~~~~~~~~~v~~~-----------~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
+.|++....+. ...+.. |..+++.+ ..||||+.++.++.||.+++|.+.
T Consensus 205 ~~i~lL~~~ra~~~l~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 205 GEIRLLNINRALRSLFRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CceeEeeechHHHHHHHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 89988775532 233333 44444433 368999999999999999998764
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.51 E-value=3 Score=45.33 Aligned_cols=112 Identities=14% Similarity=0.240 Sum_probs=71.7
Q ss_pred CeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec--cCCCCeEEEEEe--eCCCEEEEEecCCcEEEEEcC-----
Q 006909 310 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYI--PDGKGFIVGSITGTCHFYKAS----- 380 (626)
Q Consensus 310 ~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~--~~~~~i~~i~~s--p~g~~l~~g~~dg~i~i~d~~----- 380 (626)
.+.-+.-+. -++..++-+....+.|||.+.+.+.... ...+.|..+.|. |+|+.+++.+....|.+|.-.
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 334444443 4444444444567999999998865533 447889999986 588888888889999888642
Q ss_pred CCce---eeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 006909 381 GNDL---KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 428 (626)
Q Consensus 381 ~~~~---~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd 428 (626)
+... ....+.... ....+|.+..|.++| .+++|+ ++.+.|+|
T Consensus 110 ~~~p~w~~i~~i~i~~---~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISS---HTPHPIGDSIWLKDG--TLVVGS-GNQLFVFD 154 (631)
T ss_pred cCCcccceeEEEEeec---CCCCCccceeEecCC--eEEEEe-CCEEEEEC
Confidence 1111 122222221 123678999999998 444444 56788887
No 410
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.50 E-value=5.3 Score=36.79 Aligned_cols=144 Identities=10% Similarity=0.053 Sum_probs=79.5
Q ss_pred CEEEEEeCCCcEEEEeCCC--CeEEEeccCCCCeEEEEEeeCCCEEEEEecC---C---cEEEEE-cCCC---ceeeeEE
Q 006909 322 NYFISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSIT---G---TCHFYK-ASGN---DLKLEKV 389 (626)
Q Consensus 322 ~~l~s~s~dg~v~iwd~~~--~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~d---g---~i~i~d-~~~~---~~~~~~~ 389 (626)
+.|+.+...+.|.+|++.+ .++......-+.|..+.++..|+++++--.+ . .+|+|- .+.. ..+.. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~-v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR-V 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE-E
Confidence 5555556678899999883 4455555666889999999999999995332 2 556652 1111 11111 0
Q ss_pred eecccc-----------------ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCccee-----ee-ee------cC
Q 006909 390 DFHDRK-----------------KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----KF-KG------LP 440 (626)
Q Consensus 390 ~~~~~~-----------------~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~-----~~-~~------~~ 440 (626)
.+-++. .....++.+++..|-.+ -|++|+ ++++.+|.+..... .+ .. +.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 111100 00124677788887654 345544 46788887542221 01 10 11
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 441 KSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 441 ~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
..-.+..+++. +.|+|..+ +-.+++..+
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 12224455554 67888776 556777665
No 411
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.43 E-value=8.6 Score=37.89 Aligned_cols=166 Identities=11% Similarity=0.152 Sum_probs=94.3
Q ss_pred cEEEeccCCCeeeEeec-------CCCCeEEEEEeeCCC----CEEEEE-eCCCcEEEEeCCCCeEEEeccC--------
Q 006909 290 TVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDD----NYFISG-SIDGKVRIWGVCEKRVVDWADV-------- 349 (626)
Q Consensus 290 ~v~iwd~~~~~~~~~~~-------~~~~v~~~~~~p~~~----~~l~s~-s~dg~v~iwd~~~~~~~~~~~~-------- 349 (626)
.|.+||+.+++.++.+. ..+.+..+.+...++ .+++.+ +..+-|.++|+.+++..+...+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 68899999999988874 345678888876332 233333 3345799999999876553322
Q ss_pred ------------CCCeEEEEEee---CCCEEEEEecCCcEEEEEcCCC-----ceee-----eEEeeccccccCCCCeEE
Q 006909 350 ------------RDVISAICYIP---DGKGFIVGSITGTCHFYKASGN-----DLKL-----EKVDFHDRKKTSGNKITG 404 (626)
Q Consensus 350 ------------~~~i~~i~~sp---~g~~l~~g~~dg~i~i~d~~~~-----~~~~-----~~~~~~~~~~~~~~~i~~ 404 (626)
...+..++.+| +|+.|+-+...+. ++|.+.+. .... ..+...+. .......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence 12355566655 5556665554432 23333211 1100 00111111 1135667
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCc-----ceeeeeecCC-CCCeEEEEEcC--CCCEEEEE
Q 006909 405 IQFSRDESQRIMITSEDSKLRILDGVD-----VIHKFKGLPK-SGSQMSASFTT--TGKHIISI 460 (626)
Q Consensus 405 l~~s~~~~~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~-~~~v~~~~~sp--~g~~l~s~ 460 (626)
+++.++| .++++--..+.|..|+... ....+..... -..+.++.+.+ +|.+.+..
T Consensus 191 ~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 8889987 7888888899999999775 3333333222 45778888888 66655554
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.36 E-value=2 Score=43.96 Aligned_cols=133 Identities=17% Similarity=0.203 Sum_probs=64.0
Q ss_pred CCCcEEEeccCCCeeeEeecCC---CCeEEEEEeeC-CCCE-EEEEeCCCcEEEEeC-CCCe-----EEEecc-------
Q 006909 287 MDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPI-DDNY-FISGSIDGKVRIWGV-CEKR-----VVDWAD------- 348 (626)
Q Consensus 287 ~d~~v~iwd~~~~~~~~~~~~~---~~v~~~~~~p~-~~~~-l~s~s~dg~v~iwd~-~~~~-----~~~~~~------- 348 (626)
...++.+||+.+.+.++++... ..+..+.|... +..+ |+.+....+|..|-- ..++ ++.+..
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 3467999999999999999744 24567777541 2233 444444555555533 3322 222211
Q ss_pred ---C-------CCCeEEEEEeeCCCEEEEEe-cCCcEEEEEcCCCceeee--EEeeccccc----------cCCCCeEEE
Q 006909 349 ---V-------RDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE--KVDFHDRKK----------TSGNKITGI 405 (626)
Q Consensus 349 ---~-------~~~i~~i~~sp~g~~l~~g~-~dg~i~i~d~~~~~~~~~--~~~~~~~~~----------~~~~~i~~l 405 (626)
. ..-|+.|.+|.|.++|.+++ ..|.++.||+.....+.. ++.+-+... .-.+...-+
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 1 34589999999999998876 479999999987655433 222222110 011234567
Q ss_pred EEcCCCCcEEEEEe
Q 006909 406 QFSRDESQRIMITS 419 (626)
Q Consensus 406 ~~s~~~~~~l~~~s 419 (626)
+.|.||.++.+|.|
T Consensus 380 qlS~DGkRlYvTnS 393 (461)
T PF05694_consen 380 QLSLDGKRLYVTNS 393 (461)
T ss_dssp EE-TTSSEEEEE--
T ss_pred EEccCCeEEEEEee
Confidence 78888754444443
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.09 E-value=3.1 Score=45.23 Aligned_cols=112 Identities=14% Similarity=0.163 Sum_probs=73.9
Q ss_pred CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEc--CCCCcEEEEEeCCCcEEEEeC
Q 006909 352 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMITSEDSKLRILDG 429 (626)
Q Consensus 352 ~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--~~~~~~l~~~s~dg~i~iwd~ 429 (626)
.++-+.-+.-++..++-+....+.|||.+......+.. +. ..+.|..+.|. |+| +.+++.+..+.|.+|--
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~-f~-----~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES-FS-----EDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee-ec-----CCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence 34444445555555555556689999999887555422 11 23789999985 676 68888888899999852
Q ss_pred C-----------cceeeeeecCCC-CCeEEEEEcCCCCEEEEEeCCccEEEEECC
Q 006909 430 V-----------DVIHKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYD 472 (626)
Q Consensus 430 ~-----------~~~~~~~~~~~~-~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~ 472 (626)
. ..+..+....+. .+|.+..|.++|.+++.+ ++.++|++-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 1 123333333233 678899999999877665 4578888753
No 414
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.09 E-value=6.1 Score=43.48 Aligned_cols=110 Identities=12% Similarity=0.155 Sum_probs=74.9
Q ss_pred cceEEEEEcC---CCeEEEEeCCCcEEEeccCC-------C-------------eeeEeecCCCCeEEEEEe--eCCCCE
Q 006909 269 GDVLDLAWSN---SNYLLSCSMDKTVRMWQVGC-------N-------------QCLNVFDHHNYVTCVQFN--PIDDNY 323 (626)
Q Consensus 269 ~~V~~l~~s~---~~~l~s~s~d~~v~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--p~~~~~ 323 (626)
..|+.|.... ...|+.|..||.|.+|.+++ . ++...+.....+++++++ . ..++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceE
Confidence 3466665542 34899999999999996521 1 011223456688999998 6 6778
Q ss_pred EEEEeCCCcEEEEeCCC--CeEEE--eccCCCCeEEEEEeeCC---C---EEEEEecCCcEEEEEc
Q 006909 324 FISGSIDGKVRIWGVCE--KRVVD--WADVRDVISAICYIPDG---K---GFIVGSITGTCHFYKA 379 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~--~~~~~--~~~~~~~i~~i~~sp~g---~---~l~~g~~dg~i~i~d~ 379 (626)
||+++....|.||-... .+... ...+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888875433 22111 23466778999998743 2 7788899999999887
No 415
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=9.1 Score=36.88 Aligned_cols=192 Identities=13% Similarity=0.131 Sum_probs=112.0
Q ss_pred cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEee---cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 345 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~ 345 (626)
+-+.++.++. .+...+..+.-++|.|+.+...-... ...+...++.. .|++...+..|.-+.+.|+.+...-.
T Consensus 87 ~l~~Dv~vse-~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVSE-EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEecc-cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCce
Confidence 4455566654 35566667777999999766544333 33455566666 68999988877778888987543211
Q ss_pred ---e-ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCC
Q 006909 346 ---W-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 421 (626)
Q Consensus 346 ---~-~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~d 421 (626)
. .........++. .|++..++..|+-+.+.|+.+...+...-.... +..+.++..+++ +....-.+
T Consensus 163 lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~-----g~g~~sv~vsdn---r~y~vvy~ 232 (370)
T COG5276 163 LAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT-----GPGTYSVSVSDN---RAYLVVYD 232 (370)
T ss_pred eeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEec-----CCceEEEEecCC---eeEEEEcc
Confidence 1 111222233443 478888899999999999988765543222221 136777777776 33333334
Q ss_pred CcEEEEeCCcce--eeeeecCCCCCeEEE-EEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 422 SKLRILDGVDVI--HKFKGLPKSGSQMSA-SFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 422 g~i~iwd~~~~~--~~~~~~~~~~~v~~~-~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
--+.+-|..... ..+-.. ....+.++ .+.-.+++...+..+.-+-+-|+.+..
T Consensus 233 egvlivd~s~~ssp~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 233 EGVLIVDVSGPSSPTVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred cceEEEecCCCCCceEeecc-ccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence 456666655433 222222 22222222 233346677777667777777887753
No 416
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.94 E-value=0.34 Score=31.72 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=26.5
Q ss_pred CcEEEEEEcCCC---CEEEEEeCCCcEEEEEcCC
Q 006909 182 GCIWTLKFSPDG---RYLASGGEDGVVRIWHVTS 212 (626)
Q Consensus 182 ~~V~~l~fspdg---~~Latgs~Dg~i~iwd~~~ 212 (626)
|+|.+|+|||+. .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999854 4888888889999999984
No 417
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.89 E-value=8.6 Score=39.87 Aligned_cols=149 Identities=14% Similarity=0.132 Sum_probs=92.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe-----EEEeccCCCCeEEEEEee-----CCCEEEEEecCCcEEEEEcCCCc------
Q 006909 320 DDNYFISGSIDGKVRIWGVCEKR-----VVDWADVRDVISAICYIP-----DGKGFIVGSITGTCHFYKASGND------ 383 (626)
Q Consensus 320 ~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~~~i~~i~~sp-----~g~~l~~g~~dg~i~i~d~~~~~------ 383 (626)
+...+++||..|.++||+...+. ++-......+|..+..-+ +...||+ -.-..+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 45789999999999999986533 334456677887776533 2234444 556788888873221
Q ss_pred --eeeeEEeeccccccCCCCeEEEEEcC----CCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEE
Q 006909 384 --LKLEKVDFHDRKKTSGNKITGIQFSR----DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI 457 (626)
Q Consensus 384 --~~~~~~~~~~~~~~~~~~i~~l~~s~----~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 457 (626)
.......-|. . .....+++.-| .+..++.+-+.||.+.+|+........... .---.--++|.+.-..+
T Consensus 115 ~~~~L~~~yeh~-l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 115 NQYQLELIYEHS-L---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-DFLLPGPLCYCPRTDSF 189 (418)
T ss_pred cEEEEEEEEEEe-c---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-CCCCCcCeEEeecCCEE
Confidence 1111111111 1 12333344333 224688899999999999976544332221 12223346778888899
Q ss_pred EEEeCCccEEEEECCCC
Q 006909 458 ISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 458 ~s~s~dg~I~iwd~~~~ 474 (626)
++++.+..|..|.+...
T Consensus 190 vt~sss~~l~~Yky~~L 206 (418)
T PF14727_consen 190 VTASSSWTLECYKYQDL 206 (418)
T ss_pred EEecCceeEEEecHHHh
Confidence 99999999999988543
No 418
>PRK10115 protease 2; Provisional
Probab=92.88 E-value=19 Score=40.40 Aligned_cols=193 Identities=9% Similarity=0.073 Sum_probs=89.3
Q ss_pred EEEEEcCCC--eEEEEeCC-----CcEEEeccCCC--eeeEeecC-CCCeEEEEEeeCCCCEEEEEeC---CCcEEEEeC
Q 006909 272 LDLAWSNSN--YLLSCSMD-----KTVRMWQVGCN--QCLNVFDH-HNYVTCVQFNPIDDNYFISGSI---DGKVRIWGV 338 (626)
Q Consensus 272 ~~l~~s~~~--~l~s~s~d-----~~v~iwd~~~~--~~~~~~~~-~~~v~~~~~~p~~~~~l~s~s~---dg~v~iwd~ 338 (626)
..++|.+++ ++++.-.+ ..|..+++.++ +-...+.. .....-..+.+.++.+++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 458999876 33443322 36788888887 33344432 2223222233326776655443 346888884
Q ss_pred C--CCeEEEeccCC-CCeEEEEEeeCCCEEEEEecC--CcEEEE--EcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 339 C--EKRVVDWADVR-DVISAICYIPDGKGFIVGSIT--GTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 339 ~--~~~~~~~~~~~-~~i~~i~~sp~g~~l~~g~~d--g~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
. .+......... .....+. + .+..+..-+.. ...++. ++.+. .....+..+. ....|..+.+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~----~~~~i~~~~~~~~- 326 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPR----ENIMLEGFTLFTD- 326 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEE-e-CCCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCC----CCCEEEEEEEECC-
Confidence 2 33322222222 2222222 2 23444443332 233333 33321 1111111111 1246888888744
Q ss_pred CcEEEEEeCCCcEEEE--eCCc-ceeeeeecCCCCCeEEEEEc--CCCC-EEEEEeC---CccEEEEECCCC
Q 006909 412 SQRIMITSEDSKLRIL--DGVD-VIHKFKGLPKSGSQMSASFT--TTGK-HIISIGD---DCRVYVWNYDEL 474 (626)
Q Consensus 412 ~~~l~~~s~dg~i~iw--d~~~-~~~~~~~~~~~~~v~~~~~s--p~g~-~l~s~s~---dg~I~iwd~~~~ 474 (626)
.++++...++.-+++ +... ....+.. .....+..+.++ +++. ++++.+. -+.++.+|..++
T Consensus 327 -~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 327 -WLVVEERQRGLTSLRQINRKTREVIGIAF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred -EEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 577777777765554 4322 1222211 112223333344 3433 4444433 378888988765
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.86 E-value=5.1 Score=41.18 Aligned_cols=148 Identities=10% Similarity=0.100 Sum_probs=76.0
Q ss_pred CCeEEEEEeeCCCCEEEEEe-----------CCC-cEEEEeCCC--Ce---EEEeccCCCCeEEEEEeeCCCEEEEEecC
Q 006909 309 NYVTCVQFNPIDDNYFISGS-----------IDG-KVRIWGVCE--KR---VVDWADVRDVISAICYIPDGKGFIVGSIT 371 (626)
Q Consensus 309 ~~v~~~~~~p~~~~~l~s~s-----------~dg-~v~iwd~~~--~~---~~~~~~~~~~i~~i~~sp~g~~l~~g~~d 371 (626)
.....|+|.+ +++++++-. ..+ .|.+++-.. +. ...+...-.....+++.++| |+++...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4567888888 888776642 123 676665432 22 12223333456789998988 4455544
Q ss_pred CcEEEEEcCCCcee---eeEE--eeccccccCCCCeEEEEEcCCCCcEEEEEe-CC------------------CcEEEE
Q 006909 372 GTCHFYKASGNDLK---LEKV--DFHDRKKTSGNKITGIQFSRDESQRIMITS-ED------------------SKLRIL 427 (626)
Q Consensus 372 g~i~i~d~~~~~~~---~~~~--~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s-~d------------------g~i~iw 427 (626)
...++.|....... .+.+ .+......+......++|.||| .+.++.+ .. +.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 43334455432111 1111 1111101123457789999998 4444333 11 334445
Q ss_pred eCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 006909 428 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG 461 (626)
Q Consensus 428 d~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s 461 (626)
+........... .-.....++|+|+|+++++-.
T Consensus 170 ~pdg~~~e~~a~-G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAH-GFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEec-CcCCCccceECCCCCEEEEcc
Confidence 543222222222 234567899999998877644
No 420
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.82 E-value=2 Score=44.29 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=88.1
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCC-------EEEEEecCCcEEEEEcCCCceeeeEEee
Q 006909 320 DDNYFI-SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-------GFIVGSITGTCHFYKASGNDLKLEKVDF 391 (626)
Q Consensus 320 ~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-------~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 391 (626)
+.++++ .|.....++--|+..|+++..-.....+ -+.|.|..+ .-++|-.+..|.-.|.+-..........
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 444444 3445566777788888887655444444 577777532 2345556666665665433322111111
Q ss_pred ccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEEC
Q 006909 392 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 471 (626)
Q Consensus 392 ~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~ 471 (626)
.. ........+..-...| ++++++..|.|++||--.....-....-...|..+..+.+|++|++.+ ...+.+-|+
T Consensus 557 Kd--Y~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~ 631 (776)
T COG5167 557 KD--YKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDV 631 (776)
T ss_pred hh--ccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEec
Confidence 10 0111333444444454 999999999999999433333333333567888899999999988776 456777777
Q ss_pred CC
Q 006909 472 DE 473 (626)
Q Consensus 472 ~~ 473 (626)
.-
T Consensus 632 ~i 633 (776)
T COG5167 632 PI 633 (776)
T ss_pred cc
Confidence 54
No 421
>PHA02713 hypothetical protein; Provisional
Probab=92.59 E-value=12 Score=40.89 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=50.9
Q ss_pred cEEEeccCCCeeeEeecCCCC--eEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCeEEEeccCCCCe-EEEEEee
Q 006909 290 TVRMWQVGCNQCLNVFDHHNY--VTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWADVRDVI-SAICYIP 360 (626)
Q Consensus 290 ~v~iwd~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~i-~~i~~sp 360 (626)
.+..||..+++....-..+.+ -.+++.. ++.+++.|+.+ ..+..||..++.-........+- ......-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 466788776654332221111 1223332 67777888754 34778898776543332222111 1122234
Q ss_pred CCCEEEEEecCC-----cEEEEEcCCCce
Q 006909 361 DGKGFIVGSITG-----TCHFYKASGNDL 384 (626)
Q Consensus 361 ~g~~l~~g~~dg-----~i~i~d~~~~~~ 384 (626)
+|+..++|+.++ .+..||..+...
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 677778888764 478899877654
No 422
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.54 E-value=15 Score=38.16 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=53.5
Q ss_pred EEEcCCC-eEEEEeCCCcEEE---eccC-----CCeeeEee----cCC--CCeEEEEEeeC----------CCCEEEEEe
Q 006909 274 LAWSNSN-YLLSCSMDKTVRM---WQVG-----CNQCLNVF----DHH--NYVTCVQFNPI----------DDNYFISGS 328 (626)
Q Consensus 274 l~~s~~~-~l~s~s~d~~v~i---wd~~-----~~~~~~~~----~~~--~~v~~~~~~p~----------~~~~l~s~s 328 (626)
++.+|++ .|+.+..+..+.+ |+.. .+...... .+. ..|+++.+-|. +...++.|.
T Consensus 7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ 86 (415)
T PF14655_consen 7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT 86 (415)
T ss_pred EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence 4556776 5555555555444 5331 11222111 222 57888887663 356799999
Q ss_pred CCCcEEEEeCCCCeEEEeccCCCCeEEEEEee
Q 006909 329 IDGKVRIWGVCEKRVVDWADVRDVISAICYIP 360 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp 360 (626)
.+|.|++|...+..+....-|..+|..+....
T Consensus 87 ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 87 SSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred cccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 99999999886655555566777777776643
No 423
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=12 Score=36.21 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=102.3
Q ss_pred eEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE---EeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEE
Q 006909 302 LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV---DWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 378 (626)
Q Consensus 302 ~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d 378 (626)
+..+...+-+..+.++ +++...+..+.-++|.|+.+...- ......+. +-.+.-.|++..++..+.-+.++|
T Consensus 80 ~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gy--aygv~vsGn~aYVadlddgfLivd 154 (370)
T COG5276 80 LSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGY--AYGVYVSGNYAYVADLDDGFLIVD 154 (370)
T ss_pred EEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCce--EEEEEecCCEEEEeeccCcEEEEE
Confidence 3344456667778884 578888888888999999764322 22222233 334455789999999888889999
Q ss_pred cCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcce-eeeeecCCCC-CeEEEEEcCCCCE
Q 006909 379 ASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLPKSG-SQMSASFTTTGKH 456 (626)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~sp~g~~ 456 (626)
+.+...+.-.-. .......-..++.|- ++-..+..|+-+.|.|+.++. .++.++-..+ .+.++..+++..+
T Consensus 155 vsdpssP~lagr----ya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y 227 (370)
T COG5276 155 VSDPSSPQLAGR----YALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAY 227 (370)
T ss_pred CCCCCCceeeee----eccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeE
Confidence 988765543211 111223335566664 367778889999999987432 3344433444 6778887777666
Q ss_pred EEEEeCCccEEEEECCCCC
Q 006909 457 IISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 457 l~s~s~dg~I~iwd~~~~~ 475 (626)
++.. +--+.+-|..+..
T Consensus 228 ~vvy--~egvlivd~s~~s 244 (370)
T COG5276 228 LVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred EEEc--ccceEEEecCCCC
Confidence 6655 3456677777654
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=91.39 E-value=14 Score=39.52 Aligned_cols=102 Identities=8% Similarity=0.074 Sum_probs=55.5
Q ss_pred eEEEEeCCC-----cEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC--CcEEEEeCCCCeEEEeccCCC
Q 006909 281 YLLSCSMDK-----TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID--GKVRIWGVCEKRVVDWADVRD 351 (626)
Q Consensus 281 ~l~s~s~d~-----~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~ 351 (626)
.++.|+.++ ++..||..++.....-. ....-.+++. - ++.+.+.|+.+ ..+..||..+++-........
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 556666542 46678887765443322 1111112222 2 67777888764 357888877665443333222
Q ss_pred CeE-EEEEeeCCCEEEEEecCC---cEEEEEcCCCce
Q 006909 352 VIS-AICYIPDGKGFIVGSITG---TCHFYKASGNDL 384 (626)
Q Consensus 352 ~i~-~i~~sp~g~~l~~g~~dg---~i~i~d~~~~~~ 384 (626)
+.. .....-+|+..++|+.++ .+..||..+...
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 221 122234677777777653 467888776654
No 425
>PHA03098 kelch-like protein; Provisional
Probab=91.32 E-value=11 Score=41.07 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=53.9
Q ss_pred CeEEEEeCC-----CcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCC------CcEEEEeCCCCeEEEe
Q 006909 280 NYLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDW 346 (626)
Q Consensus 280 ~~l~s~s~d-----~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~d------g~v~iwd~~~~~~~~~ 346 (626)
..++.|+.+ ..+..||..+++....-. ....-.+++.. ++.+++.|+.+ ..+..||..+.+-...
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 355666654 347788887665433222 11111222222 67777777732 3588899877654332
Q ss_pred ccCCCCe-EEEEEeeCCCEEEEEecCC--------cEEEEEcCCCce
Q 006909 347 ADVRDVI-SAICYIPDGKGFIVGSITG--------TCHFYKASGNDL 384 (626)
Q Consensus 347 ~~~~~~i-~~i~~sp~g~~l~~g~~dg--------~i~i~d~~~~~~ 384 (626)
.....+. ...+...+++.++.|+.++ .+.+||..+.+.
T Consensus 422 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 422 SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 2211111 1112234566667776432 378888877654
No 426
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.27 E-value=4.9 Score=44.90 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=53.7
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCC---------Cce--eeeEEeecc--ccccCCCCeEEEEEcCCC--CcE
Q 006909 350 RDVISAICYIPDGKGFIVGSITGTCHFYKASG---------NDL--KLEKVDFHD--RKKTSGNKITGIQFSRDE--SQR 414 (626)
Q Consensus 350 ~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~---------~~~--~~~~~~~~~--~~~~~~~~i~~l~~s~~~--~~~ 414 (626)
...|..|.++|+|++++..+..|.+.+.=.+. +.. ......... ........|..+.|+|.+ ...
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 34688999999999999988876544432221 111 111111111 112334688999999974 368
Q ss_pred EEEEeCCCcEEEEeCCc
Q 006909 415 IMITSEDSKLRILDGVD 431 (626)
Q Consensus 415 l~~~s~dg~i~iwd~~~ 431 (626)
|++-..|+++++||+.+
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 99999999999999763
No 427
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.17 E-value=16 Score=35.67 Aligned_cols=202 Identities=12% Similarity=0.132 Sum_probs=109.6
Q ss_pred ceEEEEEcCCC-eEEEEeCCCcEEEeccC------CCee-eEeec------CCCCeEEEEEeeCCCC------------E
Q 006909 270 DVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQC-LNVFD------HHNYVTCVQFNPIDDN------------Y 323 (626)
Q Consensus 270 ~V~~l~~s~~~-~l~s~s~d~~v~iwd~~------~~~~-~~~~~------~~~~v~~~~~~p~~~~------------~ 323 (626)
.-+.|+++|.+ .-++...-+...+||.. ..+. +-++. .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 45788999988 55555666789999986 2222 22222 234678888875 222 3
Q ss_pred EEEEeCCCcEEEEeCCCCe------EEEecc-CCCC-eEEEEEee--CCCEEEEE-ecCCcEEEEEcCCCceeeeEEeec
Q 006909 324 FISGSIDGKVRIWGVCEKR------VVDWAD-VRDV-ISAICYIP--DGKGFIVG-SITGTCHFYKASGNDLKLEKVDFH 392 (626)
Q Consensus 324 l~s~s~dg~v~iwd~~~~~------~~~~~~-~~~~-i~~i~~sp--~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~ 392 (626)
++.++.||+|.-|...-.. .+.... .... -..+++.. .+.+|+.+ -..++|.+||-.-...... -.+.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCcc
Confidence 6778899999999753221 122211 1222 23444443 24555544 4568888887653322110 0000
Q ss_pred cccccCCCCeEEEEE------------cCCCCcEEEEEeCCCcEEEEeCC-cceeeeeecCCCCCeEEEEEcC------C
Q 006909 393 DRKKTSGNKITGIQF------------SRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTT------T 453 (626)
Q Consensus 393 ~~~~~~~~~i~~l~~------------s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp------~ 453 (626)
............|+- .++. ..=+.+..-|.|-+||.. +.++.+.....-...+.++..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 000000111111211 1111 112223334789999976 5555565444445566676644 5
Q ss_pred CCEEEEEeCCccEEEEECCCC
Q 006909 454 GKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 454 g~~l~s~s~dg~I~iwd~~~~ 474 (626)
|.+|+---.||+|..||..++
T Consensus 261 g~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred CCeEEeecCCceeEEecCCCC
Confidence 677777777999999998876
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.95 E-value=31 Score=38.72 Aligned_cols=72 Identities=11% Similarity=0.178 Sum_probs=48.1
Q ss_pred ccceEEEEEcCCC-eEEEEeCCCcEEEeccC----------CCee--e-Eee---------cCCCCeEEEEEeeC--CCC
Q 006909 268 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG----------CNQC--L-NVF---------DHHNYVTCVQFNPI--DDN 322 (626)
Q Consensus 268 ~~~V~~l~~s~~~-~l~s~s~d~~v~iwd~~----------~~~~--~-~~~---------~~~~~v~~~~~~p~--~~~ 322 (626)
.-.|..|..+|+| +|+..|..| |.|-.+. .|+. . +++ .+...|..+.|+|. ++.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3578899999998 555555544 4444331 1111 1 111 23457899999994 257
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 006909 323 YFISGSIDGKVRIWGVCE 340 (626)
Q Consensus 323 ~l~s~s~dg~v~iwd~~~ 340 (626)
+|+.-..|+++|+||+..
T Consensus 163 ~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISD 180 (717)
T ss_pred eEEEEecCCEEEEEecCC
Confidence 888999999999999964
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=90.27 E-value=15 Score=37.08 Aligned_cols=107 Identities=10% Similarity=0.104 Sum_probs=62.3
Q ss_pred ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-----CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCe
Q 006909 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 342 (626)
Q Consensus 268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~ 342 (626)
...++++.+.+++.++..+..|.+.+=..+.+..-.... ....+..+.+.| ++..++ ++.+|.+.. ....++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~~-S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLLV-SKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEEE-eCCCCC
Confidence 457888999988865556667776543344443333222 123578888988 666555 445676553 344444
Q ss_pred EEEe----ccCCCCeEEEEEeeCCCEEEEEecCCcEEEEE
Q 006909 343 VVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYK 378 (626)
Q Consensus 343 ~~~~----~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d 378 (626)
.... .......+.+.|..+++.++ .+..|.|.-|+
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 3222 12234577788777766655 44567776654
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.18 E-value=14 Score=37.80 Aligned_cols=123 Identities=17% Similarity=0.267 Sum_probs=76.2
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
.+|+|.+++||+|.+.||.--.|.+|.+++....+.. ..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~-----------------------------------------l~ 103 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ-----------------------------------------LE 103 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchh-----------------------------------------hH
Confidence 5679999999999999999999999999987542110 01
Q ss_pred CceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCC-eeeEee-cCCCCeEEEEEeeCCCCEEEEEe--CCCcEEE
Q 006909 260 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFISGS--IDGKVRI 335 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~-~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s--~dg~v~i 335 (626)
..++.+..+..|....|+.+.-++..+..| +-+|.+... ..++.. .|+..|+-..|.+ +.+.++.++ ..+++.=
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~LL~t~~~~n~lnp 181 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVILLSTTVLENVLNP 181 (657)
T ss_pred HHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEeeecccccccccc
Confidence 122333445668899998776566555544 555554322 222223 3677788888888 555443332 3344444
Q ss_pred EeCCCCeEEE
Q 006909 336 WGVCEKRVVD 345 (626)
Q Consensus 336 wd~~~~~~~~ 345 (626)
+.++++.+.+
T Consensus 182 f~~~~~~v~k 191 (657)
T KOG2377|consen 182 FHFRAGTMSK 191 (657)
T ss_pred EEEeeceeee
Confidence 5555554443
No 431
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.17 E-value=0.98 Score=29.61 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=26.7
Q ss_pred CCeEEEEEeeCCC--CEEEEEeCCCcEEEEeCCC
Q 006909 309 NYVTCVQFNPIDD--NYFISGSIDGKVRIWGVCE 340 (626)
Q Consensus 309 ~~v~~~~~~p~~~--~~l~s~s~dg~v~iwd~~~ 340 (626)
+.|.++.|+|..+ ++|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998455 6888888889999999985
No 432
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.98 E-value=6.5 Score=42.73 Aligned_cols=197 Identities=14% Similarity=0.151 Sum_probs=98.1
Q ss_pred cceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE--
Q 006909 269 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-- 345 (626)
Q Consensus 269 ~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-- 345 (626)
+...++..+|....-..+.--.|+|+++. |+.+...- ....+-.+.|+ +...|++...+|++++|++.......
T Consensus 44 gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~s 120 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESNS 120 (829)
T ss_pred CCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecchhhhcccc
Confidence 33444555554311111333458888876 55555542 33378899998 46678888899999999987644333
Q ss_pred --eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc--EEEEEeCC
Q 006909 346 --WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ--RIMITSED 421 (626)
Q Consensus 346 --~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~l~~~s~d 421 (626)
.......|..+.+..+| +++-..+|.+.+-+-............+. ...+-+|-...+++.+ .++-....
T Consensus 121 vg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~----~~~~~~~Wt~~~~~~~~~~ll~v~~~ 194 (829)
T KOG2280|consen 121 VGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPY----NELPKSCWTVFQPHRQSTILLDVDVA 194 (829)
T ss_pred cccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCC----ccCCCcceeEecCCCcceeEEeechh
Confidence 12223335555555555 55555566555443221111111000010 0111122222222111 11111100
Q ss_pred CcEEEEeCCc-ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 422 SKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 422 g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
--..++.... ..+..........+..++.||+.++|+--...|.|.+-+.+..
T Consensus 195 v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 195 VGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred hhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 0011111111 1111111222366788999999999999999999999887654
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.88 E-value=1.6 Score=40.97 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=47.9
Q ss_pred EEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc-------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909 357 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-------TSGNKITGIQFSRDESQRIMITSEDSKLRILDG 429 (626)
Q Consensus 357 ~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~ 429 (626)
.+..+++++++-+.+|.+++||+.+.+.......+..-.. .....|+.+.++.+| .-+++ -.+|..+.|+.
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~-lsng~~y~y~~ 94 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVT-LSNGDSYSYSP 94 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEE-EeCCCEEEecc
Confidence 3556889999999999999999998876554322111111 344678888888776 34443 44577788874
No 434
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.65 E-value=30 Score=36.43 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=37.0
Q ss_pred CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE------e-c-cCCCCeEEEEEeeCC
Q 006909 308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD------W-A-DVRDVISAICYIPDG 362 (626)
Q Consensus 308 ~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~------~-~-~~~~~i~~i~~sp~g 362 (626)
-...+.|+|.| ++++|++--..|.|++++..++.... . . ........|+++|+-
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 45678999999 88777765446999999765543211 1 1 135668899999874
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.28 E-value=3.8 Score=38.52 Aligned_cols=72 Identities=13% Similarity=0.209 Sum_probs=49.5
Q ss_pred CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEec---------------cCCCCeEEEEEeeCCCEEEEEecC
Q 006909 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA---------------DVRDVISAICYIPDGKGFIVGSIT 371 (626)
Q Consensus 307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---------------~~~~~i~~i~~sp~g~~l~~g~~d 371 (626)
...++..+.. .++++++.+.+|.+++||+.+++.+... .....|..+.++.+|.-+++- .+
T Consensus 11 Lgs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sn 86 (219)
T PF07569_consen 11 LGSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SN 86 (219)
T ss_pred cCCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eC
Confidence 3445555443 6788999999999999999987755311 244567777888777665554 45
Q ss_pred CcEEEEEcCCC
Q 006909 372 GTCHFYKASGN 382 (626)
Q Consensus 372 g~i~i~d~~~~ 382 (626)
|..+.|+..-.
T Consensus 87 g~~y~y~~~L~ 97 (219)
T PF07569_consen 87 GDSYSYSPDLG 97 (219)
T ss_pred CCEEEeccccc
Confidence 67777776543
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.07 E-value=0.26 Score=53.76 Aligned_cols=116 Identities=17% Similarity=0.246 Sum_probs=70.8
Q ss_pred eeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccC--CCeeeEee------cCCCCeEEEEEeeC--CCCEEEEEeCC
Q 006909 263 ELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVG--CNQCLNVF------DHHNYVTCVQFNPI--DDNYFISGSID 330 (626)
Q Consensus 263 ~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~--~~~~~~~~------~~~~~v~~~~~~p~--~~~~l~s~s~d 330 (626)
.++|..+.|..+.|...+ .+. -.-|.+.|||+. .|+....+ ....++.-+.|.|. +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 345778888888886432 222 233678889874 34332222 12334455555542 45667777778
Q ss_pred CcEEEEeCCCCeEEEeccCCCCeEE-----------EEEeeCCCEEEEEecCCcEEEEEcC
Q 006909 331 GKVRIWGVCEKRVVDWADVRDVISA-----------ICYIPDGKGFIVGSITGTCHFYKAS 380 (626)
Q Consensus 331 g~v~iwd~~~~~~~~~~~~~~~i~~-----------i~~sp~g~~l~~g~~dg~i~i~d~~ 380 (626)
+.|++..........+..|...+.. -.++|||+.++..+.||.+++|.+.
T Consensus 205 ~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 205 GEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 8888877654332222334433322 2378999999999999999988764
No 437
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.00 E-value=7.2 Score=40.38 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=84.0
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeC-------CCCEEEEEeCCCcEEEEeCCC-CeEEEeccCC--
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-------DDNYFISGSIDGKVRIWGVCE-KRVVDWADVR-- 350 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~-------~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~-- 350 (626)
.+..+..-..++-.|++.|+.+........| -+.|.|. +.+.|+-.| +..|.-.|.+- +..+.....+
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeeeeehhc
Confidence 3445666677888899999999888766666 6777771 233454444 45555556543 3222222222
Q ss_pred ---CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 351 ---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 351 ---~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
....+..-..+| ++++++..|-|++||--+...... .++.+..|..+..+.+| .++++.+ ...+.+-
T Consensus 560 ~tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKta-------lP~lG~aIk~idvta~G-k~ilaTC-k~yllL~ 629 (776)
T COG5167 560 KTKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTA-------LPGLGDAIKHIDVTANG-KHILATC-KNYLLLT 629 (776)
T ss_pred cccccccccccccCc-eEEEecCCCceeeehhhcchhhhc-------CcccccceeeeEeecCC-cEEEEee-cceEEEE
Confidence 223333333344 899999999999999655433211 23335789999999998 4554444 4566676
Q ss_pred eCC
Q 006909 428 DGV 430 (626)
Q Consensus 428 d~~ 430 (626)
|+.
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 643
No 438
>PHA02790 Kelch-like protein; Provisional
Probab=88.66 E-value=35 Score=36.57 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=52.4
Q ss_pred eEEEEeCC--CcEEEeccCCCeeeEeecCCCCe--EEEEEeeCCCCEEEEEeCCC---cEEEEeCCCCeEEEeccCCCCe
Q 006909 281 YLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYV--TCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVRDVI 353 (626)
Q Consensus 281 ~l~s~s~d--~~v~iwd~~~~~~~~~~~~~~~v--~~~~~~p~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~i 353 (626)
..+.|+.+ .++..||..+++....-....+. .+++.. ++.+.+.|+.++ .+..||..+.+=........+.
T Consensus 321 iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 45556543 45778887665443322211111 122222 678888887654 4778888766543322221111
Q ss_pred -EEEEEeeCCCEEEEEecCCcEEEEEcCCCcee
Q 006909 354 -SAICYIPDGKGFIVGSITGTCHFYKASGNDLK 385 (626)
Q Consensus 354 -~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~ 385 (626)
......-+|+..+.| |.+.+||..+++..
T Consensus 399 ~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 399 YKSCALVFGRRLFLVG---RNAEFYCESSNTWT 428 (480)
T ss_pred ccceEEEECCEEEEEC---CceEEecCCCCcEe
Confidence 111223456666666 35788988766543
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=88.19 E-value=31 Score=34.85 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=84.2
Q ss_pred ccceEEEEEcCCCeEEEEeCCCcEEEe-ccCCCeeeEee--cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 006909 268 KGDVLDLAWSNSNYLLSCSMDKTVRMW-QVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 344 (626)
Q Consensus 268 ~~~V~~l~~s~~~~l~s~s~d~~v~iw-d~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~ 344 (626)
...+.++.+.+++.++..+..|.+..- +- .++..... .....++++.+.+ ++..++++ ..|.+++=....+...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence 456888898898866666666755432 22 22222222 2445789999998 77776665 4576654334444432
Q ss_pred Eecc-----CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909 345 DWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 419 (626)
Q Consensus 345 ~~~~-----~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s 419 (626)
.... ....+.++.+.|++..++ ++.+|.+.. ....+.. ....... .........+.|..++ ..++.+
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~t-W~~~~~~---~~~~~~~~~~~~~~~~--~~~~~G 320 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKT-WEKDPVG---EEVPSNFYKIVFLDPE--KGFVLG 320 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCC-CeECCcC---CCCCcceEEEEEeCCC--ceEEEC
Confidence 2111 124578889999876555 445665543 3332221 1111110 0112457778877664 456677
Q ss_pred CCCcEEEEeC
Q 006909 420 EDSKLRILDG 429 (626)
Q Consensus 420 ~dg~i~iwd~ 429 (626)
..|.|..++.
T Consensus 321 ~~G~il~~~~ 330 (334)
T PRK13684 321 QRGVLLRYVG 330 (334)
T ss_pred CCceEEEecC
Confidence 7788877763
No 440
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.38 E-value=10 Score=38.25 Aligned_cols=110 Identities=17% Similarity=0.268 Sum_probs=57.1
Q ss_pred CeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCC---CCcEEEEEeCC------C
Q 006909 352 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD---ESQRIMITSED------S 422 (626)
Q Consensus 352 ~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~---~~~~l~~~s~d------g 422 (626)
...+|+|.|+|+.++ +...|.|++++. .+......................++++|+ +..+.++.+.. .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999986655 566999999993 333211111121222333467899999994 11333333321 1
Q ss_pred --cEEEEeCC-------cceeeeeec----CCCCCeEEEEEcCCCCEEEEEeCC
Q 006909 423 --KLRILDGV-------DVIHKFKGL----PKSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 423 --~i~iwd~~-------~~~~~~~~~----~~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
.|.-|... .....+... .....-..+.|.|||.+.++.++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 23333221 111222221 234456779999999877776643
No 441
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.21 E-value=35 Score=34.28 Aligned_cols=105 Identities=9% Similarity=0.153 Sum_probs=54.9
Q ss_pred CCCeEEEEeCC-----CcEEEeccCCCee---eEeec-CCCCe--EEEEEeeCCCCEEEEEeCC-----CcEEEEeCCCC
Q 006909 278 NSNYLLSCSMD-----KTVRMWQVGCNQC---LNVFD-HHNYV--TCVQFNPIDDNYFISGSID-----GKVRIWGVCEK 341 (626)
Q Consensus 278 ~~~~l~s~s~d-----~~v~iwd~~~~~~---~~~~~-~~~~v--~~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~ 341 (626)
.+..++.|+.+ ..+..+|+.+.+. ..... ...+. .+++.. ++.+++.|+.. ..+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 33455666654 3466677766543 12221 11111 222222 56777777642 35888898876
Q ss_pred eEEEeccC--CCCeEEEEEeeCCCEEEEEecCC----cEEEEEcCCCce
Q 006909 342 RVVDWADV--RDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDL 384 (626)
Q Consensus 342 ~~~~~~~~--~~~i~~i~~sp~g~~l~~g~~dg----~i~i~d~~~~~~ 384 (626)
+=...... .......+...+++..+.|+.++ .+.+||..+...
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 54333221 11222333345677778887664 346788877654
No 442
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.17 E-value=27 Score=38.63 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=71.2
Q ss_pred eEEEEEee--CCCEEEEEecCCcEEEEEcCCCceeee-----------EEee-ccccccCCCCeEEEEEc--CCCCcEEE
Q 006909 353 ISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLE-----------KVDF-HDRKKTSGNKITGIQFS--RDESQRIM 416 (626)
Q Consensus 353 i~~i~~sp--~g~~l~~g~~dg~i~i~d~~~~~~~~~-----------~~~~-~~~~~~~~~~i~~l~~s--~~~~~~l~ 416 (626)
|+.|.... +...|+++..||.|.+|.+..-..... .... ..-....+....+++++ .. .++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~-~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK-SRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc-ceEEE
Confidence 45454433 446788899999999997631100000 0000 00001123578889987 55 36888
Q ss_pred EEeCCCcEEEEeCCc---ceeeeeecCCCCCeEEEEEcCCC-----C-EEEEEeCCccEEEEEC
Q 006909 417 ITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTG-----K-HIISIGDDCRVYVWNY 471 (626)
Q Consensus 417 ~~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~g-----~-~l~s~s~dg~I~iwd~ 471 (626)
+++....|.||-... .......+.+...|.+++|-++. . +|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888875321 11111123466788999996543 2 7888888999999888
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.01 E-value=29 Score=32.14 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=68.1
Q ss_pred EEEcCCCeEEEEeCCCcEEEeccC--CCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCC------cEEEE-eCCCC---
Q 006909 274 LAWSNSNYLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG------KVRIW-GVCEK--- 341 (626)
Q Consensus 274 l~~s~~~~l~s~s~d~~v~iwd~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg------~v~iw-d~~~~--- 341 (626)
++-++.+.|+.+...+.|.+|++. ..+.+..|..-+.|..+.++. .|+++++--.+. .+|+| +.+..
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 333343444444566789999987 456677787779999999999 999999864332 56665 22211
Q ss_pred -e--EEEec---------------------cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909 342 -R--VVDWA---------------------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 384 (626)
Q Consensus 342 -~--~~~~~---------------------~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~ 384 (626)
. ..... ....++.+++-.|-.--|++|+ ++.+.+|.+.....
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 1 11111 2234577788878444455555 45888888764433
No 444
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.64 E-value=14 Score=40.24 Aligned_cols=80 Identities=14% Similarity=0.313 Sum_probs=53.7
Q ss_pred CeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEE
Q 006909 299 NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK 378 (626)
Q Consensus 299 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d 378 (626)
..|.........++++.-+| .+.-++++..||.|++|+....+...+-....+-..+.|...| |++.+.|..+.-|.
T Consensus 5 ~~~s~~~k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 5 FDCSRDPKEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ccccCCccccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 33444444566788999999 9999999999999999998655443333333344445555444 66777777777776
Q ss_pred cCC
Q 006909 379 ASG 381 (626)
Q Consensus 379 ~~~ 381 (626)
-.+
T Consensus 82 ~dg 84 (1636)
T KOG3616|consen 82 EDG 84 (1636)
T ss_pred ccC
Confidence 443
No 445
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.20 E-value=77 Score=36.38 Aligned_cols=172 Identities=13% Similarity=0.156 Sum_probs=98.6
Q ss_pred EEEeccCCCeeeEeecCCC-----CeEEEEEeeCCCC-EEEEEeC-----------CCcEEEEeC-CCCe---EEEeccC
Q 006909 291 VRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDN-YFISGSI-----------DGKVRIWGV-CEKR---VVDWADV 349 (626)
Q Consensus 291 v~iwd~~~~~~~~~~~~~~-----~v~~~~~~p~~~~-~l~s~s~-----------dg~v~iwd~-~~~~---~~~~~~~ 349 (626)
|++.|..++..+..+.+.. .+..+.|+..+.. ++++|.. +|.++.|++ +.++ +......
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 6777777777666664332 3566667653333 3333321 344666664 2333 3333444
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeC
Q 006909 350 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 429 (626)
Q Consensus 350 ~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~ 429 (626)
...+.++ .|...++++| ....+++||+...+....... +.....|+.+++.. .++++|...-.+..+-.
T Consensus 935 ~~~v~Ai--~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~-----k~~p~~Is~iqt~~---~RI~VgD~qeSV~~~~y 1003 (1205)
T KOG1898|consen 935 PGPVGAI--CPFQGRVLAG-VGRFLRLYDLGKKKLLRKCEL-----KFIPNRISSIQTYG---ARIVVGDIQESVHFVRY 1003 (1205)
T ss_pred CccceEE--eccCCEEEEe-cccEEEEeeCChHHHHhhhhh-----ccCceEEEEEeecc---eEEEEeeccceEEEEEE
Confidence 5556555 4666555554 566999999987665433111 11236788888765 36777766666655442
Q ss_pred C---cceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 430 V---DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 430 ~---~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
+ +....+...+-...|+++.+- |-..+|.+..=|.+.+-.+...
T Consensus 1004 ~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1004 RREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred ecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence 2 344455554445566666653 5556777777788888877654
No 446
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.09 E-value=45 Score=33.58 Aligned_cols=147 Identities=17% Similarity=0.240 Sum_probs=80.5
Q ss_pred CCeEEEEEeeCCCCEEEEEeCCCc------EEEEeCCC--C---eE-----EEeccCCC--------CeEEEEEeeCCCE
Q 006909 309 NYVTCVQFNPIDDNYFISGSIDGK------VRIWGVCE--K---RV-----VDWADVRD--------VISAICYIPDGKG 364 (626)
Q Consensus 309 ~~v~~~~~~p~~~~~l~s~s~dg~------v~iwd~~~--~---~~-----~~~~~~~~--------~i~~i~~sp~g~~ 364 (626)
+.+..+.+.| ++..+++.+.+|. +..+++.. + .+ ..+....+ -.-+|++.++|.+
T Consensus 20 GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4567777776 5556666666666 55554433 1 11 11111111 3447788777877
Q ss_pred EEEEecC------CcEEEEEcCCCceeeeEEeecc---------ccccCCCCeEEEEEcCCCCcEEEEEeC-----CC--
Q 006909 365 FIVGSIT------GTCHFYKASGNDLKLEKVDFHD---------RKKTSGNKITGIQFSRDESQRIMITSE-----DS-- 422 (626)
Q Consensus 365 l~~g~~d------g~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~i~~l~~s~~~~~~l~~~s~-----dg-- 422 (626)
+++.-.+ ..|..++.. +... ..+..+. ..........+++++|+| +.|+++.+ |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~-~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVI-RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-Cccc-ceEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCcc
Confidence 7766556 678888766 3321 1111111 122345678999999998 44555433 22
Q ss_pred c-------EEEE--eCCc---ceeeeee--cC-----CCCCeEEEEEcCCCCEEEE
Q 006909 423 K-------LRIL--DGVD---VIHKFKG--LP-----KSGSQMSASFTTTGKHIIS 459 (626)
Q Consensus 423 ~-------i~iw--d~~~---~~~~~~~--~~-----~~~~v~~~~~sp~g~~l~s 459 (626)
. ++|+ |..+ ....+.. .. ....+..+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4554 4332 1233322 21 3567888888899887765
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.56 E-value=10 Score=34.09 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=24.4
Q ss_pred cceEEEEEcCCC-------eEEEEeCCCcEEEeccC
Q 006909 269 GDVLDLAWSNSN-------YLLSCSMDKTVRMWQVG 297 (626)
Q Consensus 269 ~~V~~l~~s~~~-------~l~s~s~d~~v~iwd~~ 297 (626)
..|..++|||.| .|++.+.++.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 489999999843 68889999999999765
No 448
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.30 E-value=12 Score=38.72 Aligned_cols=46 Identities=22% Similarity=0.129 Sum_probs=38.3
Q ss_pred cccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 006909 169 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA 214 (626)
Q Consensus 169 ~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~ 214 (626)
.++.+...|......+.+++.+|++++.|+...=|.|.++|+.++.
T Consensus 295 ~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 295 APLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred cccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence 4455666777888889999999999999988777999999998753
No 449
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.51 E-value=25 Score=36.14 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=73.3
Q ss_pred CCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC--cc--eeee
Q 006909 362 GKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DV--IHKF 436 (626)
Q Consensus 362 g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~--~~--~~~~ 436 (626)
.+..+.+...|.+.=|-+.+...... .+.... .++|.++.|++|. +.+++--.+++|.+++-. +. ....
T Consensus 33 aNkqlfavrSggatgvvvkgpndDVpiSfdm~d-----~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 33 ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDD-----KGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred CcceEEEEecCCeeEEEEeCCCCCCCceeeecC-----CCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHH
Confidence 33344444445555555544332211 233333 2799999999997 789999999999999852 11 1112
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC--CCCCCccCCccceeeeccCCcEEEEecC
Q 006909 437 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC--FPSSKQKNSVRSCEHFFSEGVSVAVQWP 503 (626)
Q Consensus 437 ~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~g~~~av~~s 503 (626)
+.......|.+..|+.+ .-+|..+.. -+-+|-+.... .......+..+.-..+.++.....++.+
T Consensus 107 ~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 22234567899999866 556655543 36667665431 2222222222333344555555444433
No 450
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.46 E-value=56 Score=33.40 Aligned_cols=140 Identities=14% Similarity=0.172 Sum_probs=81.1
Q ss_pred CcEEEeccC--CCeeeEeec--------CCCCeEEEEEe--eCCCC-EEEEEeCCCcEEEEeCC---CC----eEEEecc
Q 006909 289 KTVRMWQVG--CNQCLNVFD--------HHNYVTCVQFN--PIDDN-YFISGSIDGKVRIWGVC---EK----RVVDWAD 348 (626)
Q Consensus 289 ~~v~iwd~~--~~~~~~~~~--------~~~~v~~~~~~--p~~~~-~l~s~s~dg~v~iwd~~---~~----~~~~~~~ 348 (626)
.+|++|.+. ++. +..+. ....+..+++. |.++. +++....+|.+..|-+. .+ ++++...
T Consensus 127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 469999775 343 33321 11246666664 43444 56667788988877663 23 3455666
Q ss_pred CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeee-EEeeccccccCCCCeEEEEEc--CCCCcEEEEEe-CCCcE
Q 006909 349 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFS--RDESQRIMITS-EDSKL 424 (626)
Q Consensus 349 ~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s--~~~~~~l~~~s-~dg~i 424 (626)
....+..|........|+++-.+--|.-|+......... .+.... .......|-.|++- +++..+|++++ .+++.
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccc-ccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 677899999998888999999998888888864332221 121111 11223577888874 34434555554 46789
Q ss_pred EEEeCC
Q 006909 425 RILDGV 430 (626)
Q Consensus 425 ~iwd~~ 430 (626)
.||+..
T Consensus 285 ~Vy~r~ 290 (381)
T PF02333_consen 285 AVYDRE 290 (381)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 999955
No 451
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=83.17 E-value=91 Score=35.58 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=83.7
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEee--cCCCCeEEEEEeeC--CCC---EEEEEeCCCcEEEEe-CCCCeEEEe-----c
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI--DDN---YFISGSIDGKVRIWG-VCEKRVVDW-----A 347 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~p~--~~~---~l~s~s~dg~v~iwd-~~~~~~~~~-----~ 347 (626)
.++.++.++.+...++..+...... .....|.|+.++|. +.+ +++.|.++..+.+.- +........ .
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~ 580 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE 580 (1096)
T ss_pred EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence 6777777777777777655532222 24568999999984 334 788888877655543 222222221 1
Q ss_pred cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
..+..|.-.++-.|..+|.++..||.+..|.+........... +..-...++.--.|+..+...+++.++- -..+|
T Consensus 581 ~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~K---k~~lGt~P~~Lr~f~sk~~t~vfa~sdr-P~viY 656 (1096)
T KOG1897|consen 581 IIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRK---KVTLGTQPISLRTFSSKSRTAVFALSDR-PTVIY 656 (1096)
T ss_pred ccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccc---ccccCCCCcEEEEEeeCCceEEEEeCCC-CEEEE
Confidence 2233455555656788999999999998887765544332111 0011124666666776664555555543 33344
Q ss_pred e
Q 006909 428 D 428 (626)
Q Consensus 428 d 428 (626)
.
T Consensus 657 ~ 657 (1096)
T KOG1897|consen 657 S 657 (1096)
T ss_pred e
Confidence 3
No 452
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.28 E-value=44 Score=31.30 Aligned_cols=184 Identities=13% Similarity=0.049 Sum_probs=95.6
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCC--CEEE-EEeCCCcEEEEeCCCC--eEEEe------ccC
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD--NYFI-SGSIDGKVRIWGVCEK--RVVDW------ADV 349 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~-s~s~dg~v~iwd~~~~--~~~~~------~~~ 349 (626)
++..-=..+.|.-||+.+++..+.--...+..++.+ |..+ +.++ .++..-.|.-||-... .+... ...
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCcceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 444444456777799987665443322222333333 2122 2333 3333233445663322 11111 112
Q ss_pred CCCeEEEEEeeCCCEEEEEec----------CCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEe
Q 006909 350 RDVISAICYIPDGKGFIVGSI----------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 419 (626)
Q Consensus 350 ~~~i~~i~~sp~g~~l~~g~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s 419 (626)
+...+.-..+|+|++ ..|.. .|.++.|-....-... +.. -.--..++|+.+...+.++-+
T Consensus 108 knR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i--~~~-------v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELI--WNC-------VGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceee--ehh-------ccCCccccccccCcEEEEEcc
Confidence 345666678899988 44433 1344444332211111 000 123356889888766777788
Q ss_pred CCCcEEEEeCC-------cceeeeeecC----CCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCCC
Q 006909 420 EDSKLRILDGV-------DVIHKFKGLP----KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 475 (626)
Q Consensus 420 ~dg~i~iwd~~-------~~~~~~~~~~----~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~~ 475 (626)
.+-+|.-||.. +....+.... ..-..-.+++..+|++.++.-..++|...|..++.
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc
Confidence 88889888822 2222222211 11122345566788888888888999999999883
No 453
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.22 E-value=13 Score=43.20 Aligned_cols=166 Identities=13% Similarity=0.219 Sum_probs=93.2
Q ss_pred eecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC-CeEEEeccCCCCeEEEEE--------eeCCCEEEEEecCCcE
Q 006909 304 VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWADVRDVISAICY--------IPDGKGFIVGSITGTC 374 (626)
Q Consensus 304 ~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~i~~i~~--------sp~g~~l~~g~~dg~i 374 (626)
.+.|...-..+-+.|.=+..-+| .|+.+.+|+..+ ++...+.+....|..+.. .|.=+++++-+.--.|
T Consensus 74 q~~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei 151 (1311)
T KOG1900|consen 74 QFSNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEI 151 (1311)
T ss_pred HhcCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceE
Confidence 33444444445555533444444 578999999987 445455555556655542 3333455555555566
Q ss_pred EEEEcCCCceeeeEEeecc--ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE--EeCCc------c------------
Q 006909 375 HFYKASGNDLKLEKVDFHD--RKKTSGNKITGIQFSRDESQRIMITSEDSKLRI--LDGVD------V------------ 432 (626)
Q Consensus 375 ~i~d~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i--wd~~~------~------------ 432 (626)
.++-+.-.........+.. .....+..|+++....+| .++.++.||.|+= |...+ +
T Consensus 152 ~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG--RIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~ 229 (1311)
T KOG1900|consen 152 VILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENG--RIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSS 229 (1311)
T ss_pred EEEEEEeccccCcccccccceeeecCCceEEEEEeccCC--cEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHH
Confidence 6665533222211111111 111224678999978887 4555555663322 11110 0
Q ss_pred -ee-eeeec-CCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 433 -IH-KFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 433 -~~-~~~~~-~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
+. .+... .+..+|..+......+.+.+-+..|+|.+|++..
T Consensus 230 lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 230 LVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 00 11111 3567899999988888999999999999999987
No 454
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.20 E-value=44 Score=31.28 Aligned_cols=169 Identities=14% Similarity=0.213 Sum_probs=90.0
Q ss_pred CeEEEEeCCCcEEEeccC--CCeeeEee------cCCCCeEEEEEeeCCCCEEEEEeCC---------CcEEEEeCCCCe
Q 006909 280 NYLLSCSMDKTVRMWQVG--CNQCLNVF------DHHNYVTCVQFNPIDDNYFISGSID---------GKVRIWGVCEKR 342 (626)
Q Consensus 280 ~~l~s~s~d~~v~iwd~~--~~~~~~~~------~~~~~v~~~~~~p~~~~~l~s~s~d---------g~v~iwd~~~~~ 342 (626)
.+.+.++..-.|.-||.. .....++. ......+.-..+| +|++++-.-.| |.++.|-.. ++
T Consensus 72 ~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~ 149 (310)
T KOG4499|consen 72 EFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG-HQ 149 (310)
T ss_pred eEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccC-CC
Confidence 355555555556667743 22333331 1234556667788 88884422222 334444321 22
Q ss_pred EEEeccCCCCeEEEEEeeCCCEEEE-EecCCcEEEEE--cCCCceeeeE--EeeccccccCCCCeEEEEEcCCCCcEEEE
Q 006909 343 VVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYK--ASGNDLKLEK--VDFHDRKKTSGNKITGIQFSRDESQRIMI 417 (626)
Q Consensus 343 ~~~~~~~~~~i~~i~~sp~g~~l~~-g~~dg~i~i~d--~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~s~~~~~~l~~ 417 (626)
+......-..-+.++|+.+.+.+.. -+.+-.|.-|| ..++...... +.+........--.-.++...+| ++.++
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va 228 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVA 228 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEE
Confidence 2222222334467888888776665 44556776677 5555433221 11111100011122344455565 67788
Q ss_pred EeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEc
Q 006909 418 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT 451 (626)
Q Consensus 418 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 451 (626)
+-..++|...|..+........-....+++++|-
T Consensus 229 ~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 8888999999977655544443357789999995
No 455
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.92 E-value=44 Score=36.95 Aligned_cols=97 Identities=9% Similarity=0.107 Sum_probs=55.7
Q ss_pred CCeEEEEEeeCCCEEEEEecCC-----cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 006909 351 DVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 425 (626)
Q Consensus 351 ~~i~~i~~sp~g~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~ 425 (626)
+.-..++|-|+|..+++-..|| .+.++.-++-+.--... ...-...+..++|.-.. .+++.+..+.|+
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~l-----r~~~dEk~~~~~wn~~s--~vlav~~~n~~~ 319 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDL-----RVGCDEKAFLENWNLLS--TVLAVAEGNLLK 319 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccc-----cCCchhhhhhhhhhHHH--HHHHHhhcceEE
Confidence 3344588999999999876554 34555433321100000 01112456667776653 345556678999
Q ss_pred EEeCCcceeeeeecCCCCCeEEEEEcCCC
Q 006909 426 ILDGVDVIHKFKGLPKSGSQMSASFTTTG 454 (626)
Q Consensus 426 iwd~~~~~~~~~~~~~~~~v~~~~~sp~g 454 (626)
+|-..+...-++.......+.-+.|+|..
T Consensus 320 lwttkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 320 LWTTKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEccceEEEEEEeecCCCcceeeecccc
Confidence 99877654444443344456667888854
No 456
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=81.64 E-value=1e+02 Score=35.09 Aligned_cols=157 Identities=11% Similarity=0.070 Sum_probs=85.9
Q ss_pred CeEEEEeCCCcEEEeccCCCeeeEeecCCCCeE-------------EEEEee-CCCCEEEEEeC----------CCcEEE
Q 006909 280 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT-------------CVQFNP-IDDNYFISGSI----------DGKVRI 335 (626)
Q Consensus 280 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~-------------~~~~~p-~~~~~l~s~s~----------dg~v~i 335 (626)
+.++.++.|+.|.-.|..+|+....|.....|. .+.-.| ..++.+++|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 478888899999999999999988776443331 011111 02345666643 688999
Q ss_pred EeCCCCeEEEeccC----------C---------CCeEEEEEeeCCCEEEEEec------------------CCcEEEEE
Q 006909 336 WGVCEKRVVDWADV----------R---------DVISAICYIPDGKGFIVGSI------------------TGTCHFYK 378 (626)
Q Consensus 336 wd~~~~~~~~~~~~----------~---------~~i~~i~~sp~g~~l~~g~~------------------dg~i~i~d 378 (626)
+|.++++++=.... . ..-..+++.|....++.+.. .+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 99999886531111 0 00123455555555554332 23555666
Q ss_pred cCCCceeeeEEe-eccccc-cCCCCeEEEEEcC-CCC--cEEEEEeCCCcEEEEeCCcceeee
Q 006909 379 ASGNDLKLEKVD-FHDRKK-TSGNKITGIQFSR-DES--QRIMITSEDSKLRILDGVDVIHKF 436 (626)
Q Consensus 379 ~~~~~~~~~~~~-~~~~~~-~~~~~i~~l~~s~-~~~--~~l~~~s~dg~i~iwd~~~~~~~~ 436 (626)
.++++....... .|.... .......-+.+.. +|. ..++.++.+|.+.++|-.+.....
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 666665443111 111000 0001111222322 431 278889999999999976554433
No 457
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=80.44 E-value=1.3e+02 Score=35.59 Aligned_cols=16 Identities=19% Similarity=-0.027 Sum_probs=11.8
Q ss_pred ccCCccccCCCCcccc
Q 006909 539 FSLGSWFSNDGPCRGS 554 (626)
Q Consensus 539 ~~~~~~~s~dg~~l~s 554 (626)
...++|.+|||..+..
T Consensus 663 sp~alaVsPdg~v~IA 678 (1899)
T KOG4659|consen 663 SPYALAVSPDGDVIIA 678 (1899)
T ss_pred CcceEEECCCCcEEEe
Confidence 3567899999995544
No 458
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.03 E-value=1.2e+02 Score=34.81 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=96.6
Q ss_pred cCccceEEEEEc---C--C--CeEEEEeCCCcEEEecc------CC---------CeeeEeec----CCCCeEEEEEeeC
Q 006909 266 GHKGDVLDLAWS---N--S--NYLLSCSMDKTVRMWQV------GC---------NQCLNVFD----HHNYVTCVQFNPI 319 (626)
Q Consensus 266 ~h~~~V~~l~~s---~--~--~~l~s~s~d~~v~iwd~------~~---------~~~~~~~~----~~~~v~~~~~~p~ 319 (626)
.-..+|..|+|. . + ..++..-....+.|+.. .. ..++..+. ...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 356788888887 2 1 13455555556666661 11 12233332 3447789999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC------eEEEeccCC----------CCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCc
Q 006909 320 DDNYFISGSIDGKVRIWGVCEK------RVVDWADVR----------DVISAICYIPDGKGFIVGSITGTCHFYKASGND 383 (626)
Q Consensus 320 ~~~~l~s~s~dg~v~iwd~~~~------~~~~~~~~~----------~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~ 383 (626)
+...||.....|...||++... ......... ..-..+.|.++.+.|++++.. .+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCC
Confidence 8889999999999999999211 111111111 223478898888888887654 78899998765
Q ss_pred eeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc
Q 006909 384 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 431 (626)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~ 431 (626)
....... ......|..+.-+|....+++.-. ...|...++..
T Consensus 236 ~~~~l~~-----~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLVT-----AKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred ccchhcc-----CCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 4221111 112367888888887433444332 25676667654
No 459
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.00 E-value=79 Score=32.80 Aligned_cols=148 Identities=15% Similarity=0.139 Sum_probs=78.5
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEeCCCCe-EEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce---eeeE
Q 006909 313 CVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL---KLEK 388 (626)
Q Consensus 313 ~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~---~~~~ 388 (626)
.+..++ ++.+++.+.....++-||--... ..........++++.+.+++..++++ ..|.+..-+-..... ....
T Consensus 243 ~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 243 TVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFDFEE 320 (398)
T ss_pred eEEEcC-CCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCcccccceee
Confidence 344555 66666665543323334332211 12233445668899999998877665 556654432222111 1111
Q ss_pred EeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC-cceeeee-ecCCCCCeEEEEEcCCCCEEEEEeCCccE
Q 006909 389 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRV 466 (626)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~~~~sp~g~~l~s~s~dg~I 466 (626)
.... .....++.+.|.+++ .+++++..|.+....-. +.-.... ...-......+.|.++++.+++| .+|.|
T Consensus 321 ~~~~----~~~~~l~~v~~~~d~--~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 321 ADIK----SRGFGILDVGYRSKK--EAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred cccC----CCCcceEEEEEcCCC--cEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 1111 112468999999885 46666677777665422 2212211 12224567899997777666655 57877
Q ss_pred EEE
Q 006909 467 YVW 469 (626)
Q Consensus 467 ~iw 469 (626)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 460
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.80 E-value=0.24 Score=50.49 Aligned_cols=138 Identities=12% Similarity=0.176 Sum_probs=93.2
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCC
Q 006909 180 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 259 (626)
Q Consensus 180 H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (626)
|-..-....|-|.+.-|+.++.+..+..||-....
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~--------------------------------------------- 67 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQV--------------------------------------------- 67 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhcce---------------------------------------------
Confidence 43444456677887778888888889888865411
Q ss_pred CceeeccCccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCeeeEe-ecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEE
Q 006909 260 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 336 (626)
Q Consensus 260 ~~~~~~~h~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iw 336 (626)
..-...++...+++|..++ .++.+-..+.+.+||+.+...... ++....-.-+.|++ ....++.+...|.+.|+
T Consensus 68 --~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viy 144 (615)
T KOG2247|consen 68 --ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIY 144 (615)
T ss_pred --ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEE
Confidence 0011234556677787665 555667778999999975432211 11111112277888 77788888889999999
Q ss_pred eCCCCeEEEecc-CCCCeEEEEEeeCCCEE
Q 006909 337 GVCEKRVVDWAD-VRDVISAICYIPDGKGF 365 (626)
Q Consensus 337 d~~~~~~~~~~~-~~~~i~~i~~sp~g~~l 365 (626)
+..+.+.....+ |...++++++.+.+..+
T Consensus 145 nhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 145 NHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred eccchhhhhhhcccccceeEEEecccceee
Confidence 998877666666 88899999999987433
No 461
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.72 E-value=85 Score=33.12 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=61.3
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccc-cCCCCeEEEEEcCCC-----CcEEEEEe-C--
Q 006909 350 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-TSGNKITGIQFSRDE-----SQRIMITS-E-- 420 (626)
Q Consensus 350 ~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~s~~~-----~~~l~~~s-~-- 420 (626)
-.....|+|.|+|+.|++--..|.|++++..+..... ...+..... ........|+++|+- ..+|.+.. .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~-~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV-VFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee-eecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 3456789999999766665546999999865443211 111111111 124778999999873 12344332 1
Q ss_pred -------CCcEEEEeCC-------cceeeeeecC--CCCCeEEEEEcCCCCEEEEEeCC
Q 006909 421 -------DSKLRILDGV-------DVIHKFKGLP--KSGSQMSASFTTTGKHIISIGDD 463 (626)
Q Consensus 421 -------dg~i~iwd~~-------~~~~~~~~~~--~~~~v~~~~~sp~g~~l~s~s~d 463 (626)
...|.-|... .....+...+ ....-..+.|.|||.+.++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 2234334322 1223333221 11234567899999887776654
No 462
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.45 E-value=38 Score=28.77 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=72.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccccCCCceee
Q 006909 185 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 264 (626)
Q Consensus 185 ~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (626)
..-+|......|+.++.-|.|.|++.......... ...++..+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-------------------------------------~~~~i~~L 44 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-------------------------------------QDSDISFL 44 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCcccccccc-------------------------------------ccCceeEE
Confidence 44567766778999999999999987753211000 01223333
Q ss_pred ccCccceEEEEEc---CC-C--eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeC---CCCEEEEEeCCCcEEE
Q 006909 265 HGHKGDVLDLAWS---NS-N--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGSIDGKVRI 335 (626)
Q Consensus 265 ~~h~~~V~~l~~s---~~-~--~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~s~dg~v~i 335 (626)
. -...|++|+-. |+ + .|+.|+. ..+..||+..+.-+..-...+.|+++.+-.. ....++.|+ +..|.-
T Consensus 45 N-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~G 121 (136)
T PF14781_consen 45 N-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQG 121 (136)
T ss_pred E-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEE
Confidence 2 34567777543 22 2 5555554 5799999988776655556677888877431 234455544 577877
Q ss_pred EeCCCCeE
Q 006909 336 WGVCEKRV 343 (626)
Q Consensus 336 wd~~~~~~ 343 (626)
||....+.
T Consensus 122 fd~~G~e~ 129 (136)
T PF14781_consen 122 FDYEGNEI 129 (136)
T ss_pred eCCCCcEE
Confidence 87765554
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.39 E-value=25 Score=41.15 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=27.0
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 212 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~ 212 (626)
......++|+|.-+++|.|..+|.|+++-...
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccc
Confidence 34567889999999999999999999996543
No 464
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=79.34 E-value=11 Score=38.57 Aligned_cols=166 Identities=14% Similarity=0.161 Sum_probs=96.6
Q ss_pred cccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecCCCCCCceeecCCccccc
Q 006909 177 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 256 (626)
Q Consensus 177 l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (626)
|..-...|..+-..|||+.|..-+. ..+.|+++.+..........+.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~ds-------------------------------- 262 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDS-------------------------------- 262 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcC--------------------------------
Confidence 4445567888889999996665544 5788998876322111000000
Q ss_pred cCCCceeeccCccceE-EEEEcCCC-eEEEEeCCCcEEEe-ccCCC-e----eeEeecC-CCCeEEEEEeeCCCCEEEEE
Q 006909 257 EESPLQELHGHKGDVL-DLAWSNSN-YLLSCSMDKTVRMW-QVGCN-Q----CLNVFDH-HNYVTCVQFNPIDDNYFISG 327 (626)
Q Consensus 257 ~~~~~~~~~~h~~~V~-~l~~s~~~-~l~s~s~d~~v~iw-d~~~~-~----~~~~~~~-~~~v~~~~~~p~~~~~l~s~ 327 (626)
++... ..|+ .+..-..+ -|+.++.||.|.-| |+..+ + .++.++. ..++..+.-.. +.+-+++-
T Consensus 263 pg~~~-------~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l 334 (733)
T COG4590 263 PGDSR-------HQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSL 334 (733)
T ss_pred CCchH-------HHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEE
Confidence 00000 0111 00111223 57778888888877 44322 2 1122221 23333333222 44567888
Q ss_pred eCCCcEEEEeCCCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCce
Q 006909 328 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 384 (626)
Q Consensus 328 s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~ 384 (626)
+..|++.++.....+.+-.......+..++++|.+.++++- ..|.++++.+++...
T Consensus 335 ~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 335 YRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred cCCCceeeeecccCcceehhhhhcCcceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 88999998877666666555555678889999999988864 457899998876544
No 465
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=78.99 E-value=72 Score=35.06 Aligned_cols=32 Identities=13% Similarity=0.313 Sum_probs=28.0
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 212 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~ 212 (626)
..-++++.-+|.|+-++.+..||+|++|++..
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 34578888899999999999999999999875
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.61 E-value=19 Score=37.58 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006909 182 GCIWTLKFSPDGRYLASGGEDGVVRIW 208 (626)
Q Consensus 182 ~~V~~l~fspdg~~Latgs~Dg~i~iw 208 (626)
-.|..+..++.|..+|-+|.+|.+.++
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE
Confidence 358889999999999999999965543
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.57 E-value=0.33 Score=49.52 Aligned_cols=144 Identities=10% Similarity=0.206 Sum_probs=97.4
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCE-EEEEeCCCcEEEEeCCCCeEEEec-c
Q 006909 272 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY-FISGSIDGKVRIWGVCEKRVVDWA-D 348 (626)
Q Consensus 272 ~~l~~s~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~s~dg~v~iwd~~~~~~~~~~-~ 348 (626)
....|-+.+ .++.++.+..|..||-. ++.......+.....++|.. ++.. ++.+-..+.+.+||+.+.....+. +
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDk-egdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDK-EGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhcc-ccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 344566654 68888888889999865 55555555666677888887 5554 445666789999999764432221 1
Q ss_pred CCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 006909 349 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 426 (626)
Q Consensus 349 ~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~i 426 (626)
....-.-+.|++.+..++.|...|.+.+|+....+.... ...|..+++++++.+.+ +.+.++.|..+.+
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv-------~Gkh~RRgtq~av~lEd--~vil~dcd~~L~v 184 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV-------MGKHQRRGTQIAVTLED--YVILCDCDNTLSV 184 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhh-------hcccccceeEEEecccc--eeeecCcHHHHHH
Confidence 112222267899999999999999999999876554321 11144789999999985 6777777665544
No 468
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=78.01 E-value=1.3e+02 Score=34.34 Aligned_cols=120 Identities=13% Similarity=0.149 Sum_probs=76.2
Q ss_pred CCceeeccC---ccceEEEEEcCCC--eEEEEeCCCcEEEeccCCCe-----eeEee-cCC----------CCeEEEEEe
Q 006909 259 SPLQELHGH---KGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-----CLNVF-DHH----------NYVTCVQFN 317 (626)
Q Consensus 259 ~~~~~~~~h---~~~V~~l~~s~~~--~l~s~s~d~~v~iwd~~~~~-----~~~~~-~~~----------~~v~~~~~~ 317 (626)
.++..+..+ ..+..+++|+|.. .||.....|...||++.... .+... .+. +.-..+.|.
T Consensus 133 ~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~ 212 (765)
T PF10214_consen 133 NPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV 212 (765)
T ss_pred ceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec
Confidence 444444422 3467899999854 89999999999999992111 11111 111 223477887
Q ss_pred eCCCCEEEEEeCCCcEEEEeCCCCeEEE---eccCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCC
Q 006909 318 PIDDNYFISGSIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGN 382 (626)
Q Consensus 318 p~~~~~l~s~s~dg~v~iwd~~~~~~~~---~~~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~ 382 (626)
+ +.+.|+.++. ..+.++|+.+..... .......|..+.-+|. +..++. ....|...++...
T Consensus 213 ~-~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 213 S-DSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS 278 (765)
T ss_pred C-CCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence 7 7777777764 578999998876533 3344567888888886 333333 2357778887763
No 469
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.64 E-value=57 Score=34.33 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=18.8
Q ss_pred ccceEEEEEcCCC-eEEEEeCCCcEEEe
Q 006909 268 KGDVLDLAWSNSN-YLLSCSMDKTVRMW 294 (626)
Q Consensus 268 ~~~V~~l~~s~~~-~l~s~s~d~~v~iw 294 (626)
.-.|..+..++.| .++-++.+|.+.++
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEE
Confidence 3467778888888 66677777765554
No 470
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.38 E-value=1.2e+02 Score=33.53 Aligned_cols=184 Identities=12% Similarity=0.221 Sum_probs=89.2
Q ss_pred CCceeeccCccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEe--ec---CCCCeEEEEEeeCCCCEEEEEeCCCcE
Q 006909 259 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV--FD---HHNYVTCVQFNPIDDNYFISGSIDGKV 333 (626)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~---~~~~v~~~~~~p~~~~~l~s~s~dg~v 333 (626)
..+..+.-....+-.+.|+.+..|+....+|++++|++. |..+.. .+ ....|..+.+.. +|=.+.+ .+|.+
T Consensus 74 ~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~-~GVavlt--~~g~v 149 (829)
T KOG2280|consen 74 QLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH-NGVAVLT--VSGQV 149 (829)
T ss_pred cchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec-CceEEEe--cCCcE
Confidence 344444333348889999999999999999999999986 333333 21 223355555544 4533333 34555
Q ss_pred EEEe-CCCCeEEEeccCC---CCeEEEEEeeCCC---EEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEE
Q 006909 334 RIWG-VCEKRVVDWADVR---DVISAICYIPDGK---GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 406 (626)
Q Consensus 334 ~iwd-~~~~~~~~~~~~~---~~i~~i~~sp~g~---~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 406 (626)
.+-. ............+ -.-+|-...+++. .++-....-...++-..........+ ......+..+.
T Consensus 150 ~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~------~~~~~~~~ki~ 223 (829)
T KOG2280|consen 150 ILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL------SWPNSSVVKIS 223 (829)
T ss_pred EEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc------CCCCceEEEEE
Confidence 4443 3322222222211 1112222222221 11110000001111111111111111 11125788899
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCC--cceeeeeecCCCCCeEEEEEcCCC
Q 006909 407 FSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTG 454 (626)
Q Consensus 407 ~s~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~g 454 (626)
.||+. ++|+.-...|.|.+-+.. +....+....+ .+...++|.-+.
T Consensus 224 VS~n~-~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 224 VSPNR-RFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCGND 271 (829)
T ss_pred EcCCc-ceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeecCC
Confidence 99986 789988999999988754 33334433222 222356665433
No 471
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=77.15 E-value=81 Score=31.34 Aligned_cols=200 Identities=10% Similarity=0.023 Sum_probs=90.6
Q ss_pred CccceEEEEEcCCC-eEE-EEeCCCcEEEeccCCCee----------------eEeecCCCCeEEEEEeeCCCCEEEEEe
Q 006909 267 HKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQC----------------LNVFDHHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 267 h~~~V~~l~~s~~~-~l~-s~s~d~~v~iwd~~~~~~----------------~~~~~~~~~v~~~~~~p~~~~~l~s~s 328 (626)
+...|+++...+.. .|+ -++....++++++..-.. ...+.+......+.........++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 45689999988754 444 444444599998832211 122233333333333331223445555
Q ss_pred CCCcEEEEeCCCC--eEEEec-------cCCCCeEEEEEeeC--CCEEEEEecCCcEEEEEcCCCceeee--EEeecccc
Q 006909 329 IDGKVRIWGVCEK--RVVDWA-------DVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLE--KVDFHDRK 395 (626)
Q Consensus 329 ~dg~v~iwd~~~~--~~~~~~-------~~~~~i~~i~~sp~--g~~l~~g~~dg~i~i~d~~~~~~~~~--~~~~~~~~ 395 (626)
...+|.++..... +..... ....++..+..+++ ...+.+|+..+...++++........ ...+....
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 5677777644321 111111 11223334433433 56788887753445555532100000 00000000
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCc--ceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCC
Q 006909 396 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 473 (626)
Q Consensus 396 ~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~ 473 (626)
. ...++....... + .++.+..+..+ +.|... ....... .-...+.++++. ..||+.-+ +..|.|+++.+
T Consensus 201 ~-~~~p~~i~~l~~-~--e~Llc~~~~~v-~Vn~~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~ 271 (302)
T smart00036 201 T-SLKPISVVQVPR-D--EFLLCYDEFGV-FVNLYGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKT 271 (302)
T ss_pred c-ccCceEEEEECC-C--eEEEEECcEEE-EEeCCCCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCC
Confidence 0 003444444433 2 34444433333 333221 1111111 123445666765 46777776 45599999998
Q ss_pred CC
Q 006909 474 LC 475 (626)
Q Consensus 474 ~~ 475 (626)
+.
T Consensus 272 ~~ 273 (302)
T smart00036 272 GE 273 (302)
T ss_pred Cc
Confidence 73
No 472
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.44 E-value=42 Score=39.38 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=59.1
Q ss_pred cCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 006909 348 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 427 (626)
Q Consensus 348 ~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw 427 (626)
+.......++|+|.-..++.++..|.|++|-....+.... +... ....++.+.+-... ....+...+..+.+|
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~----~~~~--~~~~~~~~~~~~~~-s~~~~l~~~~~~~~~ 105 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGL----HPKQ--NQINVTRIELLVGI-SRNLVLSDDDSLHLW 105 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccceEEEec----cccc--cchhhhheeeeecc-cccceeecccceeee
Confidence 3345567789999999999999999999997654433221 1100 00122222222211 123344445555666
Q ss_pred eCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 428 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 428 d~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
........+ ....+.+..-.+--.+ +-+ ..+.+++|+..-.
T Consensus 106 ~~~~~~~~~----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~ 146 (993)
T KOG1983|consen 106 SIKIKTGVF----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRH 146 (993)
T ss_pred cccccceee----cCCcceeccCCCCcch-hcc-cCceeeEeeechh
Confidence 543322222 1222333222222223 444 7888999887653
No 473
>PLN02193 nitrile-specifier protein
Probab=75.22 E-value=1.2e+02 Score=32.37 Aligned_cols=145 Identities=7% Similarity=0.027 Sum_probs=69.0
Q ss_pred CeEEEEeCC-------CcEEEeccCCCeeeEeec---CCC--CeE-EEEEeeCCCCEEEEEeCC-----CcEEEEeCCCC
Q 006909 280 NYLLSCSMD-------KTVRMWQVGCNQCLNVFD---HHN--YVT-CVQFNPIDDNYFISGSID-----GKVRIWGVCEK 341 (626)
Q Consensus 280 ~~l~s~s~d-------~~v~iwd~~~~~~~~~~~---~~~--~v~-~~~~~p~~~~~l~s~s~d-----g~v~iwd~~~~ 341 (626)
..++.|+.+ ..+.+||+.+.+-...-. ... ... +++. - ++.+++.|+.+ ..+..||+.+.
T Consensus 177 ~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~-~-~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 177 KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVS-I-GSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEE-E-CCEEEEECCCCCCCCCccEEEEECCCC
Confidence 355556542 247788887765432211 111 111 1222 2 56677777755 35888998876
Q ss_pred eEEEeccC-----CCCeEEEEEeeCCCEEEEEecCC-----cEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCC
Q 006909 342 RVVDWADV-----RDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 411 (626)
Q Consensus 342 ~~~~~~~~-----~~~i~~i~~sp~g~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 411 (626)
+-...... ...-.++ ..-+++.++.|+.++ .+..||+.+...... ............. .++.. ++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~-~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~R~~~-~~~~~-~g 329 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSM-AADEENVYVFGGVSATARLKTLDSYNIVDKKWFHC--STPGDSFSIRGGA-GLEVV-QG 329 (470)
T ss_pred EEEEcCcCCCCCCCccceEE-EEECCEEEEECCCCCCCCcceEEEEECCCCEEEeC--CCCCCCCCCCCCc-EEEEE-CC
Confidence 54432221 1111222 223566666776543 466788776543221 1110000000111 12222 33
Q ss_pred CcEEEEEeCC----CcEEEEeCCcc
Q 006909 412 SQRIMITSED----SKLRILDGVDV 432 (626)
Q Consensus 412 ~~~l~~~s~d----g~i~iwd~~~~ 432 (626)
++++.++.+ ..+.+||..+.
T Consensus 330 -kiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 330 -KVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred -cEEEEECCCCCccCceEEEECCCC
Confidence 466666654 46888997654
No 474
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=74.92 E-value=1.6e+02 Score=33.64 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=46.4
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeee-------------------cCCCCCeEEEEEcCCCCEEEEE
Q 006909 400 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-------------------LPKSGSQMSASFTTTGKHIISI 460 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------------------~~~~~~v~~~~~sp~g~~l~s~ 460 (626)
..|.++....-+ ..++.+..||+|.++|-.+....... .+....+..++|||++.-++.-
T Consensus 260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 567777777765 68999999999999995432111100 0111234458899999999999
Q ss_pred eCCccEE
Q 006909 461 GDDCRVY 467 (626)
Q Consensus 461 s~dg~I~ 467 (626)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999866
No 475
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=74.27 E-value=1.1e+02 Score=31.40 Aligned_cols=149 Identities=11% Similarity=0.161 Sum_probs=86.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEEEEee----CCCE--EEEEe-cC---CcEEEEEcCCCceeeeEE
Q 006909 320 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP----DGKG--FIVGS-IT---GTCHFYKASGNDLKLEKV 389 (626)
Q Consensus 320 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp----~g~~--l~~g~-~d---g~i~i~d~~~~~~~~~~~ 389 (626)
...+++....++-+.+||+..+.+..+. .+.++.+..-. .|+. |++++ .+ .+|++|.+......+..+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 4467777778888999999988876653 23445444322 3443 34443 32 479999887433323222
Q ss_pred eeccc-cccCCCCeEEEEEc--C-CCCcEEEEEeCCCcEEEEeCC---c------ceeeeeecCCCCCeEEEEEcCCCCE
Q 006909 390 DFHDR-KKTSGNKITGIQFS--R-DESQRIMITSEDSKLRILDGV---D------VIHKFKGLPKSGSQMSASFTTTGKH 456 (626)
Q Consensus 390 ~~~~~-~~~~~~~i~~l~~s--~-~~~~~l~~~s~dg~i~iwd~~---~------~~~~~~~~~~~~~v~~~~~sp~g~~ 456 (626)
.-... .......+..+++. + +|..++++...+|.+.-|.+. + .++.|.. ...+..|.......+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDDETGR 221 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTTTE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEecccCC
Confidence 11110 01112347788874 3 354577788889988777642 1 2334433 457888888888889
Q ss_pred EEEEeCCccEEEEECCC
Q 006909 457 IISIGDDCRVYVWNYDE 473 (626)
Q Consensus 457 l~s~s~dg~I~iwd~~~ 473 (626)
|+.+-++.-|.-|+.+.
T Consensus 222 LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp EEEEETTTEEEEEESSC
T ss_pred EEEecCccEEEEEecCC
Confidence 99998887777777653
No 476
>PRK10115 protease 2; Provisional
Probab=74.16 E-value=1.6e+02 Score=33.25 Aligned_cols=109 Identities=8% Similarity=0.030 Sum_probs=63.0
Q ss_pred cceEEEEEcCCC-eEEEE-eCC----CcEEEeccCCCeeeEe-ecCCCCeEEEEEeeCCCCEEEEEeCC------CcEEE
Q 006909 269 GDVLDLAWSNSN-YLLSC-SMD----KTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSID------GKVRI 335 (626)
Q Consensus 269 ~~V~~l~~s~~~-~l~s~-s~d----~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~s~d------g~v~i 335 (626)
-.+..+.|+|++ +|+.+ +.+ ..|++-|+.++..+.. +.... ..++|.+ +++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 456778889998 44432 222 3588889988864322 22211 4689999 87766655442 35777
Q ss_pred EeCCCC--eEEE-eccCCCCeE-EEEEeeCCCEEEEEecC---CcEEEEEcC
Q 006909 336 WGVCEK--RVVD-WADVRDVIS-AICYIPDGKGFIVGSIT---GTCHFYKAS 380 (626)
Q Consensus 336 wd~~~~--~~~~-~~~~~~~i~-~i~~sp~g~~l~~g~~d---g~i~i~d~~ 380 (626)
+++.++ +-.. +........ .+..+.+++++++.+.. +.+.+++..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 888776 2222 222222232 33334488877765443 478888853
No 477
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=73.99 E-value=29 Score=35.62 Aligned_cols=161 Identities=7% Similarity=0.045 Sum_probs=91.2
Q ss_pred CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE--eccC-CC----CeE-EEEEeeCCCEEEEEecCCcEEEE-
Q 006909 307 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADV-RD----VIS-AICYIPDGKGFIVGSITGTCHFY- 377 (626)
Q Consensus 307 ~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~-~~----~i~-~i~~sp~g~~l~~g~~dg~i~i~- 377 (626)
....|..+-..| +++.+..-+. .++.++++.+..... .... .+ .|+ .+..-..|..+++++.||.|.-|
T Consensus 219 ~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 219 PFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 456788888999 9998877654 678888886644321 1111 11 122 22223456778888999988765
Q ss_pred EcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEE
Q 006909 378 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI 457 (626)
Q Consensus 378 d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 457 (626)
|++....+. .......+-....+.-+.-. +..+-+++-+..|++.++........+... -...+.-+++||.+.++
T Consensus 297 dvr~~~~p~--l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 297 DVRRDGQPH--LNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYL 372 (733)
T ss_pred eeecCCCCc--ceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchh
Confidence 554433211 11000011111222222211 223457777888888887744222222111 22355668899999999
Q ss_pred EEEeCCccEEEEECCCC
Q 006909 458 ISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 458 ~s~s~dg~I~iwd~~~~ 474 (626)
++- +.|.|+++.+++.
T Consensus 373 l~e-~~gki~~~~l~Nr 388 (733)
T COG4590 373 LSE-DQGKIRLAQLENR 388 (733)
T ss_pred eee-cCCceEEEEecCC
Confidence 875 3578999999876
No 478
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.69 E-value=75 Score=29.29 Aligned_cols=52 Identities=10% Similarity=-0.011 Sum_probs=35.4
Q ss_pred eCCCcEEEeccCCCeeeEeecCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCC
Q 006909 286 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 340 (626)
Q Consensus 286 s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~ 340 (626)
-.+|....+|..+-+++..+...+.-+.++- ++.-|+.++-..+++.-|..+
T Consensus 108 w~egvaf~~d~~t~~~lg~~~y~GeGWgLt~---d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRFSYEGEGWGLTS---DDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred eccceeEEEChHHhhhhcccccCCcceeeec---CCcceEeeCCceEEEecCHHH
Confidence 3467788899999989888887777777766 444455554445566666543
No 479
>PRK13613 lipoprotein LpqB; Provisional
Probab=73.18 E-value=72 Score=35.08 Aligned_cols=154 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred CeEEEEEeeCCCCEEEEEeCCC-cEEEEeCCCCeE----EEeccCCCCeEEEEEeeCCCEEEEEec----CCcEEEEEcC
Q 006909 310 YVTCVQFNPIDDNYFISGSIDG-KVRIWGVCEKRV----VDWADVRDVISAICYIPDGKGFIVGSI----TGTCHFYKAS 380 (626)
Q Consensus 310 ~v~~~~~~p~~~~~l~s~s~dg-~v~iwd~~~~~~----~~~~~~~~~i~~i~~sp~g~~l~~g~~----dg~i~i~d~~ 380 (626)
.+.+++.++ ++..++..+.++ .+++..+..+.. ....-....++.-+|.++| .+.+... ...+++..-.
T Consensus 364 ~~~s~avS~-~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~~ 441 (599)
T PRK13613 364 PLRRVAVSR-DESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQGD 441 (599)
T ss_pred CccceEEcC-CCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcCC
Q ss_pred CCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE----------eCCcceeeeeecCCCCCeEEEEE
Q 006909 381 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL----------DGVDVIHKFKGLPKSGSQMSASF 450 (626)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iw----------d~~~~~~~~~~~~~~~~v~~~~~ 450 (626)
..........+.+ ..|+.+..|+||-+..+....++.=+|| . ...............+.+++|
T Consensus 442 G~~~~V~~~~l~g------~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W 514 (599)
T PRK13613 442 GEPVEVRTPELDG------HRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSW 514 (599)
T ss_pred CcEEEeeccccCC------CEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEE
Q ss_pred cCCCCEEEEEeCCc-cEEEEECC
Q 006909 451 TTTGKHIISIGDDC-RVYVWNYD 472 (626)
Q Consensus 451 sp~g~~l~s~s~dg-~I~iwd~~ 472 (626)
..++.+++.+...+ ...+|-+.
T Consensus 515 ~~~~sL~Vlg~~~~~~~~v~~v~ 537 (599)
T PRK13613 515 AGDSQLVVLGREEGGVQQARYVQ 537 (599)
T ss_pred cCCCEEEEEeccCCCCcceEEEe
No 480
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.76 E-value=48 Score=38.92 Aligned_cols=71 Identities=24% Similarity=0.418 Sum_probs=49.9
Q ss_pred CCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC----CC----Ce-----------------EEEec-cCCCCeEEEEEeeC
Q 006909 308 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGV----CE----KR-----------------VVDWA-DVRDVISAICYIPD 361 (626)
Q Consensus 308 ~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~----~~----~~-----------------~~~~~-~~~~~i~~i~~sp~ 361 (626)
+..|+|+.... +|+.|++|- || .+|.+ .. .+ +.... .+.++|..+.....
T Consensus 178 g~~V~~I~~t~-nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 178 GVSVNCITYTE-NGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CceEEEEEecc-CCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 55788998655 777777654 55 34433 11 10 11223 45678999999998
Q ss_pred CCEEEEEecCCcEEEEEcCCC
Q 006909 362 GKGFIVGSITGTCHFYKASGN 382 (626)
Q Consensus 362 g~~l~~g~~dg~i~i~d~~~~ 382 (626)
-+.+.+-+..|+|.+|++...
T Consensus 254 R~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred cceeeeeccCceEEEEEccCC
Confidence 899999999999999999764
No 481
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=72.11 E-value=53 Score=31.35 Aligned_cols=136 Identities=17% Similarity=0.238 Sum_probs=70.4
Q ss_pred EEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEeCC---CcEEEEeCCC----CeEEE---eccCCCCeEEEEEe
Q 006909 291 VRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE----KRVVD---WADVRDVISAICYI 359 (626)
Q Consensus 291 v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s~d---g~v~iwd~~~----~~~~~---~~~~~~~i~~i~~s 359 (626)
-.+||+.+++..... .....+.+-.+.| +|.++.+|+.. ..+++++... ..-.. .......-.+...-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 357888777554322 2333445556778 99999988752 3588887644 11111 11222334445566
Q ss_pred eCCCEEEEEecCC-cEEEEEcCCCceeeeEEeecc--ccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC
Q 006909 360 PDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHD--RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 430 (626)
Q Consensus 360 p~g~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~ 430 (626)
|||+.|++|+... +..+|...........+.+.. .......----+...|+| ++++.+..+.. |||..
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~s~--i~d~~ 197 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRGSI--IYDYK 197 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCCcE--EEeCC
Confidence 8999999988774 344444322111111111110 001111223356677887 67777666544 44544
No 482
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=72.03 E-value=12 Score=23.73 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=20.4
Q ss_pred cccCcEEEEEEcCCCCEEEEEe-CC--CcEEEE
Q 006909 179 AHKGCIWTLKFSPDGRYLASGG-ED--GVVRIW 208 (626)
Q Consensus 179 ~H~~~V~~l~fspdg~~Latgs-~D--g~i~iw 208 (626)
...+.-....|||||++|+-++ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4556788899999999777554 44 666665
No 483
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=71.55 E-value=21 Score=32.09 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=26.0
Q ss_pred CCeEEEEEeeCC------CEEEEEecCCcEEEEEcCCC
Q 006909 351 DVISAICYIPDG------KGFIVGSITGTCHFYKASGN 382 (626)
Q Consensus 351 ~~i~~i~~sp~g------~~l~~g~~dg~i~i~d~~~~ 382 (626)
..+.+++|||.| -.|++.+.+|.+.+|.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999954 36888899999999987654
No 484
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.08 E-value=1.4e+02 Score=31.12 Aligned_cols=108 Identities=11% Similarity=0.092 Sum_probs=55.7
Q ss_pred eEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCC-c
Q 006909 353 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-D 431 (626)
Q Consensus 353 i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~-~ 431 (626)
...+..+++|.+++++.....++-||--.... ...... ....++.+.+.+++ .+++ .+..|.+..-+.. .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W--~~~~~~-----~~~~l~~v~~~~dg-~l~l-~g~~G~l~~S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW--QPHNRA-----SARRIQNMGWRADG-GLWL-LTRGGGLYVSKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcce--EEecCC-----CccceeeeeEcCCC-CEEE-EeCCceEEEecCCCC
Confidence 33455667777666665443333333221110 111111 13678999999987 4444 4456665443311 1
Q ss_pred ce--eeeeecC---CCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 432 VI--HKFKGLP---KSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 432 ~~--~~~~~~~---~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
.. ..+.... ....+.++.|.+++..+++| ..|.+....
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~ 354 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST 354 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC
Confidence 10 0222211 22358889998887766555 577776654
No 485
>PLN02153 epithiospecifier protein
Probab=68.88 E-value=1.4e+02 Score=30.27 Aligned_cols=103 Identities=9% Similarity=0.198 Sum_probs=52.0
Q ss_pred CeEEEEeCC-----CcEEEeccCCCeeeEeecC-----CCC--eEEEEEeeCCCCEEEEEeCC-----------CcEEEE
Q 006909 280 NYLLSCSMD-----KTVRMWQVGCNQCLNVFDH-----HNY--VTCVQFNPIDDNYFISGSID-----------GKVRIW 336 (626)
Q Consensus 280 ~~l~s~s~d-----~~v~iwd~~~~~~~~~~~~-----~~~--v~~~~~~p~~~~~l~s~s~d-----------g~v~iw 336 (626)
..++.|+.+ ..+.+||..+.+-...-.. ..+ -.+++.. ++.+++.|+.+ ..|.+|
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEE
Confidence 355555543 3577888876654322111 111 1122222 56677777754 247788
Q ss_pred eCCCCeEEEeccCC-----CCeEEEEEeeCCCEEEEEecC-------------CcEEEEEcCCCcee
Q 006909 337 GVCEKRVVDWADVR-----DVISAICYIPDGKGFIVGSIT-------------GTCHFYKASGNDLK 385 (626)
Q Consensus 337 d~~~~~~~~~~~~~-----~~i~~i~~sp~g~~l~~g~~d-------------g~i~i~d~~~~~~~ 385 (626)
|..+.+=....... ..-.+++ .-+++.++.|+.+ ..+.+||..+....
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 88776533322211 1111222 2456666665432 45788888776543
No 486
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=68.10 E-value=51 Score=36.49 Aligned_cols=62 Identities=10% Similarity=0.235 Sum_probs=35.1
Q ss_pred CccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec-CCCCeEEEEEeeCCCCEEEEEe
Q 006909 267 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 328 (626)
Q Consensus 267 h~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~s 328 (626)
....+..++|+-...+++.+..+.|++|-..+....-... .-..+.-+.|+|...+.+...+
T Consensus 294 ~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 294 CDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred chhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEec
Confidence 3445666677654434444455679999776554332222 3345667788885555554433
No 487
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=67.96 E-value=1.4e+02 Score=30.15 Aligned_cols=41 Identities=5% Similarity=-0.031 Sum_probs=21.4
Q ss_pred CcEEEEeCCCCeEEEeccCCC--CeEEEEEeeCCCEEEEEecC
Q 006909 331 GKVRIWGVCEKRVVDWADVRD--VISAICYIPDGKGFIVGSIT 371 (626)
Q Consensus 331 g~v~iwd~~~~~~~~~~~~~~--~i~~i~~sp~g~~l~~g~~d 371 (626)
..|.+||..+.+=........ .........+++..+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 457888887765433222211 11122233467777777653
No 488
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=67.80 E-value=1.8e+02 Score=31.25 Aligned_cols=102 Identities=15% Similarity=0.214 Sum_probs=62.8
Q ss_pred ccceEEEEEcCCCeEEEEeCCCcEEEeccCCCeeeEeec--CCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 006909 268 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 345 (626)
Q Consensus 268 ~~~V~~l~~s~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~ 345 (626)
..+|..+.+.-.|.+..|+.|| +..||..+++.++.-. ....|..+..+- ...+..|+.+| |.+.+.++.+...
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~--qg~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADV--QGRLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHh--cCcEEEEeccc-eEEEchhhccccc
Confidence 4578888888888888888887 6677888887776553 224566665553 34566677666 7777776633332
Q ss_pred e--ccCCCCeEEEEEeeCCCEEEEEecCCcE
Q 006909 346 W--ADVRDVISAICYIPDGKGFIVGSITGTC 374 (626)
Q Consensus 346 ~--~~~~~~i~~i~~sp~g~~l~~g~~dg~i 374 (626)
. .-....|..+.-..+| .+..|+..|-.
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~ 269 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLW 269 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccce
Confidence 1 1223334444433444 56667766644
No 489
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.37 E-value=1.2e+02 Score=29.75 Aligned_cols=89 Identities=15% Similarity=0.288 Sum_probs=56.2
Q ss_pred CcEEEeccCCCeeeEee-cCCCCeEEEEEeeCCCCEEEEEe------CCCcEEEEeCCCCeEEEecc-----CCCCeEEE
Q 006909 289 KTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDWAD-----VRDVISAI 356 (626)
Q Consensus 289 ~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~-----~~~~i~~i 356 (626)
..|++||..+.+-...- ...+.|+.+.|.. +...++.|. ....+..||..+..-..... ..++|+.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 35999998877665444 2567899999985 556666654 34568889998876554444 34778888
Q ss_pred EEee-CCCEEE-EEe-cCCc--EEEEE
Q 006909 357 CYIP-DGKGFI-VGS-ITGT--CHFYK 378 (626)
Q Consensus 357 ~~sp-~g~~l~-~g~-~dg~--i~i~d 378 (626)
.+.. ++..+. .|. .+|. |..||
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEc
Confidence 7743 343343 443 3443 44454
No 490
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=67.05 E-value=83 Score=36.73 Aligned_cols=140 Identities=11% Similarity=0.167 Sum_probs=82.3
Q ss_pred eEEEEeC---------CCcEEEeccC-----CCee-----eEee---cCCCCeEEEEEeeCCCCEEEEEeCCCcEEEEeC
Q 006909 281 YLLSCSM---------DKTVRMWQVG-----CNQC-----LNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 281 ~l~s~s~---------d~~v~iwd~~-----~~~~-----~~~~---~~~~~v~~~~~~p~~~~~l~s~s~dg~v~iwd~ 338 (626)
+|+.|.. -|.+.|+|+- .+++ ++.+ ..+++|..++=- +|. |+++. ..+|.+|++
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV--~G~-l~~~~-GqKI~v~~l 1123 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV--RGH-LLSSQ-GQKIIVRKL 1123 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe--ccE-EEEcc-CcEEEEEEe
Confidence 6776632 3789999873 2322 2222 266778777643 454 44433 468999999
Q ss_pred -CCCeEEEeccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEeeccccccCCCCeEEEEEcCCCCc-EEE
Q 006909 339 -CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ-RIM 416 (626)
Q Consensus 339 -~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~l~ 416 (626)
+...++-..-..-++...+..--.++|+.|..-..|.+.-..........+. +....-.++++.|--+|.+ .++
T Consensus 1124 ~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~s----rd~~~l~v~s~EFLVdg~~L~fl 1199 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLS----RDFEPLNVYSTEFLVDGSNLSFL 1199 (1366)
T ss_pred ccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEee----cCCchhhceeeeeEEcCCeeEEE
Confidence 5555543222333333333334466788888878888776655443332221 1111246778888777654 477
Q ss_pred EEeCCCcEEEEe
Q 006909 417 ITSEDSKLRILD 428 (626)
Q Consensus 417 ~~s~dg~i~iwd 428 (626)
++..++.|++|-
T Consensus 1200 vsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1200 VSDADRNIHVYM 1211 (1366)
T ss_pred EEcCCCcEEEEE
Confidence 788899999875
No 491
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=66.76 E-value=39 Score=38.30 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=57.0
Q ss_pred CCCcEEEEeCCCCeEEEe-ccCCCCeEEEEEeeCCCEEEE-EecCC-----cEEEEEcCCCceeeeEEeeccccccCCCC
Q 006909 329 IDGKVRIWGVCEKRVVDW-ADVRDVISAICYIPDGKGFIV-GSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNK 401 (626)
Q Consensus 329 ~dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~-g~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 401 (626)
..+.|.+-|......... .....+|.+-.|+|||+.|+- .+..+ .|++-++.+.......+.... ..
T Consensus 327 ~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~------aa 400 (912)
T TIGR02171 327 VTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN------AA 400 (912)
T ss_pred CCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc------cc
Confidence 335788888887666655 677888999999999999987 44333 588888877665544444442 55
Q ss_pred eEEEEEcCCCCcEEEEE
Q 006909 402 ITGIQFSRDESQRIMIT 418 (626)
Q Consensus 402 i~~l~~s~~~~~~l~~~ 418 (626)
|..-...++|...|+-.
T Consensus 401 iprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 401 IPRWRVLENGDTVIVYV 417 (912)
T ss_pred ccceEecCCCCeEEEEE
Confidence 66666666664444433
No 492
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=66.18 E-value=27 Score=22.28 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=24.3
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCCeEEEeccCCCCeEEEEE
Q 006909 320 DDNYFISGS-IDGKVRIWGVCEKRVVDWADVRDVISAICY 358 (626)
Q Consensus 320 ~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~ 358 (626)
+++.|+++. .+++|.++|..+++.............++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 566555544 578999999988777664444333344443
No 493
>PLN02153 epithiospecifier protein
Probab=66.13 E-value=1.5e+02 Score=29.87 Aligned_cols=104 Identities=9% Similarity=0.073 Sum_probs=53.5
Q ss_pred CCCeEEEEeCC-------CcEEEeccCCCeeeEeecC---CC----CeEEEEEeeCCCCEEEEEeCC-----CcEEEEeC
Q 006909 278 NSNYLLSCSMD-------KTVRMWQVGCNQCLNVFDH---HN----YVTCVQFNPIDDNYFISGSID-----GKVRIWGV 338 (626)
Q Consensus 278 ~~~~l~s~s~d-------~~v~iwd~~~~~~~~~~~~---~~----~v~~~~~~p~~~~~l~s~s~d-----g~v~iwd~ 338 (626)
.+..++.|+.+ ..+.+||+.+.+-...-.. .. ....+.+ ++.+++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEEC
Confidence 33355556542 3577888877654332211 11 1122222 56777777753 35788898
Q ss_pred CCCeEEEeccC------CCCeEEEEEeeCCCEEEEEecC-----------CcEEEEEcCCCce
Q 006909 339 CEKRVVDWADV------RDVISAICYIPDGKGFIVGSIT-----------GTCHFYKASGNDL 384 (626)
Q Consensus 339 ~~~~~~~~~~~------~~~i~~i~~sp~g~~l~~g~~d-----------g~i~i~d~~~~~~ 384 (626)
.+.+-...... .......+..-+++.++.|+.+ ..+.+||..+...
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 87653332211 1111222223456667777654 2467788876654
No 494
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.43 E-value=1.1e+02 Score=28.16 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=58.8
Q ss_pred eEEEEeCC--CcEEEeccCCCeeeEeecCC-CCeEEEEEeeCCCCE-EEEEeCCCcEEEEeCCCCeEEEeccCCCCeEEE
Q 006909 281 YLLSCSMD--KTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNY-FISGSIDGKVRIWGVCEKRVVDWADVRDVISAI 356 (626)
Q Consensus 281 ~l~s~s~d--~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~p~~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~i~~i 356 (626)
++.+.+.- ..|++||+.+++.+...... ..+..=-... -++. ....-.+|.-..+|.++-+........+.-..+
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgL 136 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-LGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGL 136 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceee-ccceEEEEEeccceeEEEChHHhhhhcccccCCcceee
Confidence 45555443 46999999999887765422 1222111111 1222 233345677888888876665544444444444
Q ss_pred EEeeCCCEEEEEecCCcEEEEEcCCCc
Q 006909 357 CYIPDGKGFIVGSITGTCHFYKASGND 383 (626)
Q Consensus 357 ~~sp~g~~l~~g~~dg~i~i~d~~~~~ 383 (626)
+ .|++.|+.+....++++-|..+..
T Consensus 137 t--~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 137 T--SDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred e--cCCcceEeeCCceEEEecCHHHhh
Confidence 4 466778887777788887766544
No 495
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=65.08 E-value=1.4e+02 Score=28.94 Aligned_cols=192 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEeCCCCeEEE-eccCCCCeEEEEEeeCCCEEEEEecCCcEEEEEcCCCceeeeEEe
Q 006909 312 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 390 (626)
Q Consensus 312 ~~~~~~p~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 390 (626)
..++-.| ++..-+++...+.|--.|..+++... -.+.......|..-|||..-++-+.. .|.-.|-++.......+.
T Consensus 65 ~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 65 FDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred cccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Q ss_pred eccccccCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEeCCcceeeeeecCCCCCeEEEEEcCCCCEEEEEeCCccEEEEE
Q 006909 391 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 470 (626)
Q Consensus 391 ~~~~~~~~~~~i~~l~~s~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s~s~dg~I~iwd 470 (626)
.... ........|.+.| .+.+++...-.=++=-.+..+.++... .......++..|+|..-++.-.++.|-.-|
T Consensus 143 ~~~a----~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiarid 216 (353)
T COG4257 143 LEHA----DANLETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIARID 216 (353)
T ss_pred cccC----CCcccceeeCCCc-cEEEeeccccceecCcccCceeeeccC-CCCCCcceEECCCCcEEEEeccccceEEcc
Q ss_pred CCCC---CCCCCCccCCccceeeeccCCcEEEEecCCCCccccc
Q 006909 471 YDEL---CFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS 511 (626)
Q Consensus 471 ~~~~---~~~~~~~~~~~~~~~~~~~~g~~~av~~s~~~~~l~~ 511 (626)
-..+ ..+.....+.-..-+--.|-|......|.......+.
T Consensus 217 p~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfd 260 (353)
T COG4257 217 PFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFD 260 (353)
T ss_pred cccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeC
No 496
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=63.99 E-value=1.8e+02 Score=32.21 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcceeeeecCCCCCccCCCCCeeeecC-CCCCCceeecCC--------
Q 006909 181 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK-KKSSHVPVVIPD-------- 251 (626)
Q Consensus 181 ~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------- 251 (626)
.+.|-.+.|.++++.+++.-.+|.|.+||..................-..-...+.... .........+..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Q ss_pred ccccc--cCCCceeec---cCccceEEEEEc-CCCeEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEE-----EEeeCC
Q 006909 252 EVFQI--EESPLQELH---GHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCV-----QFNPID 320 (626)
Q Consensus 252 ~~~~~--~~~~~~~~~---~h~~~V~~l~~s-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~-----~~~p~~ 320 (626)
+++.+ +...+..+. -+........|. .+|.|.-= .+++|.+|++...+..+++....-|..- .+.|..
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 006909 321 DNYFISGSIDGKVRIWGV 338 (626)
Q Consensus 321 ~~~l~s~s~dg~v~iwd~ 338 (626)
.+.++.+. +++|++.|+
T Consensus 288 ~nRvLLs~-~nkIyLld~ 304 (670)
T PF10395_consen 288 PNRVLLSV-NNKIYLLDL 304 (670)
T ss_pred CCeEEEEc-CCEEEEEee
No 497
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=63.53 E-value=26 Score=22.12 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcEEEEEeCC--CcEEEE
Q 006909 400 NKITGIQFSRDESQRIMITSED--SKLRIL 427 (626)
Q Consensus 400 ~~i~~l~~s~~~~~~l~~~s~d--g~i~iw 427 (626)
.......|+|||..++.++..+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 5677889999997777777777 776666
No 498
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=63.42 E-value=27 Score=22.25 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=24.6
Q ss_pred eEEEEeCCCcEEEeccCCCeeeEeecCCCCeEEEEE
Q 006909 281 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 316 (626)
Q Consensus 281 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~ 316 (626)
.+++.-.+++|.++|..+++.+..+.-......+.|
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 344455678999999998888887765444445544
No 499
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=63.39 E-value=39 Score=36.96 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred cccccccccccccccCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC---CcceeeeecCCCCCccCCCCCeeeecCCCCC
Q 006909 167 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS---VAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 243 (626)
Q Consensus 167 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~Latgs~Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (626)
+....+....+..-...+....-+++...|+.+..||.+....... ..................-.+..
T Consensus 132 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~-------- 203 (547)
T PF11715_consen 132 DWCRSYVPYSFSFRSPHRLAAVTHDSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLF-------- 203 (547)
T ss_dssp S-EE-B-SS-TTTS-EEEEEEE---SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS--------
T ss_pred CccEeeeCCCCCccCCCeEEEEEecCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcC--------
Q ss_pred CceeecCCccccccCCCceeeccCccceEEEEEcC----CC-eEEEEeCCCcEEEeccCCCeeeEee
Q 006909 244 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN----SN-YLLSCSMDKTVRMWQVGCNQCLNVF 305 (626)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~----~~-~l~s~s~d~~v~iwd~~~~~~~~~~ 305 (626)
......-......+..++.+. +. +|++.+.|+++|+||+.+++++.+.
T Consensus 204 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 204 --------------PWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ---------------TT---SSSS---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred --------------CcccccCCCCCCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
No 500
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=63.24 E-value=2.8e+02 Score=31.78 Aligned_cols=33 Identities=6% Similarity=-0.046 Sum_probs=27.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCccEEEEECCCC
Q 006909 442 SGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 474 (626)
Q Consensus 442 ~~~v~~~~~sp~g~~l~s~s~dg~I~iwd~~~~ 474 (626)
...|.++....-+.+++.+-.||+|.++|..+.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~ 291 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTM 291 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcc
Confidence 355677777777889999999999999998876
Done!